RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12402
         (375 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 90.0 bits (222), Expect = 3e-21
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 32/266 (12%)

Query: 2   AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
           A+   Y G  Y+G Q          R   +++++  + +AL +            + I  
Sbjct: 7   ALGIEYDGSKYYGWQ----------RQNEVRSVQEKLEKALSQV---------ANEPITV 47

Query: 62  QRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
             A RTD GV    Q+V         + A    +N +LP  I +  +K V   F+++ + 
Sbjct: 48  FCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSA 107

Query: 118 NAR-TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
            AR                         P     +    +   G ++F +F + +     
Sbjct: 108 TARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT 167

Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
                +                + + IK  +F+ H +R +VG  M +      +  I + 
Sbjct: 168 PWRNVMHINVTRHGPY------VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 221

Query: 237 FGLDQFDL--PMAPGLGLLLEQVHYD 260
                  L    A   GL L  V Y 
Sbjct: 222 LAAKDRTLAAATAKAEGLYLVAVDYP 247


>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 285

 Score = 28.7 bits (63), Expect = 1.2
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAA 323
            K+  +G+ ESL    +   V       I    V T   EK +L   E + D +      
Sbjct: 158 SKFALEGLCESLAVLLLPFGV---HLSLIECGPVHTAFMEK-VLGSPEEVLDRTDIHTFH 213

Query: 324 KAALAAANGEELQEVTDGEEEE 345
           +     A+ +++        EE
Sbjct: 214 RFYQYLAHSKQVFREAAQNPEE 235


>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
           phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 326

 Score = 28.1 bits (62), Expect = 1.5
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)

Query: 139 DDFRLTPDQF-NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
             F++  D    +L  L   Y     +HN        D   S +++        V   LE
Sbjct: 48  KTFKIPVDTLITYLMTLEDHYHADVAYHNN---IHAADVVQSTHVLLSTPALEAVFTDLE 104

Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
           ++          +               G +++ LI     L       +      LE  
Sbjct: 105 ILAAIFASAIHDVDH------------PGVSNQFLINTNSELALMYNDSSV-----LENH 147

Query: 258 HYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
           H  +  +   ++       F  + K+  +   K ++  ++ T++
Sbjct: 148 HLAVGFKLLQEENCDI---FQNLTKKQRQSLRKMVIDIVLATDM 188


>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 343

 Score = 27.9 bits (62), Expect = 2.0
 Identities = 20/129 (15%), Positives = 31/129 (24%), Gaps = 18/129 (13%)

Query: 77  IVSLKLPEEANKEAINEHLPEQIRILSIKR---VTKGFNSKNNCN---ARTY----SYTC 126
           IVS     E   + I  +      I          +  + K       AR Y        
Sbjct: 36  IVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIF 95

Query: 127 PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYE--------GTHNFHNFTSKRKPLDPSC 178
             + +      +DD  + PD F + QA     +           N +          P  
Sbjct: 96  HNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSSKPEL 155

Query: 179 SRYIMSFDC 187
                 F  
Sbjct: 156 LYRTDFFPG 164


>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
           pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
          Length = 326

 Score = 26.2 bits (57), Expect = 6.9
 Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 139 DDFRLTPDQF-NFLQALLKQYEGTHNFHNFT 168
            +F++  +    ++ ++ K Y     +HN+ 
Sbjct: 53  QNFQMKHEVLCRWILSVKKNYRKNVAYHNWR 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,379,463
Number of extensions: 64228
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 9
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)