BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12404
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
 pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
          Length = 616

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 18  HIPPLDINKFETEIMRKDFERIQQR---LPMEP------LSMIRYKLPQPPTGKMSDIAA 68
           H  PL  N  E +I+++ + +IQ +   L   P      + +   ++P  P+ K+ D  A
Sbjct: 254 HGKPLPKNMAE-QIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIA 312

Query: 69  WTECVENSMSQLEHQSTRIVNL 90
             +    ++++L H S RI+ L
Sbjct: 313 TRKAYGQALAKLGHASDRIIAL 334


>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
          Length = 616

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 18  HIPPLDINKFETEIMRKDFERIQQR---LPMEP------LSMIRYKLPQPPTGKMSDIAA 68
           H  PL  N  E +I+++ + +IQ +   L   P      + +   ++P  P+ K+ D  A
Sbjct: 256 HGKPLPKNMAE-QIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIA 314

Query: 69  WTECVENSMSQLEHQSTRIVNL 90
             +    ++++L H S RI+ L
Sbjct: 315 TRKAYGQALAKLGHASDRIIAL 336


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,997
Number of Sequences: 62578
Number of extensions: 121764
Number of successful extensions: 346
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 6
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)