BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12404
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2
SV=1
Length = 223
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 86/118 (72%)
Query: 6 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSD 65
TRRYRPTKNYL ++P D + FETEIMR +FER+ R P+E LSM RY+LP P +G+ +D
Sbjct: 40 TRRYRPTKNYLSYLPTPDYSAFETEIMRNEFERLSSRQPLELLSMKRYELPAPLSGQRND 99
Query: 66 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123
I AW ECV NSM+QLEHQ+ RI NL+LM ++G WK Y + L++ + AQ L +LR
Sbjct: 100 ITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLR 157
>sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1
Length = 225
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 86/118 (72%)
Query: 6 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSD 65
TRRYRPTKNYL ++ D + FET+IMR +FER+ R P+E LSM RY+LP P +G+ +D
Sbjct: 40 TRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKND 99
Query: 66 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123
I AW ECV NSM+QLEHQ+ RI NL+LM ++G WK Y + LV+ + AQ +L +LR
Sbjct: 100 ITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLR 157
>sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1
Length = 225
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 86/118 (72%)
Query: 6 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSD 65
TRRYRPTKNYL ++ D + FET+IMR +FER+ R P+E LSM RY+LP P +G+ +D
Sbjct: 40 TRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKND 99
Query: 66 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123
I AW ECV NSM+QLEHQ+ RI NL+LM ++G WK Y + LV+ + AQ +L +LR
Sbjct: 100 ITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLR 157
>sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1
Length = 226
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 6 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTG-KMS 64
TRRYRPTKNYL ++ D + FET+IMR +FER+ R P+E LSM RY+LP PP+G K +
Sbjct: 40 TRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPPSGQKKN 99
Query: 65 DIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123
DI AW ECV NSM+QLEHQ+ RI NL+LM ++G WK Y + LV+ + AQ +L +LR
Sbjct: 100 DITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLR 158
>sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1
Length = 225
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 82/118 (69%)
Query: 6 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSD 65
TRRYRPTKNYL ++P D + FETEIMR +FER+ R PME LSM RY+LP P +G+ +D
Sbjct: 40 TRRYRPTKNYLSYLPTPDFSAFETEIMRNEFERLAARQPMELLSMKRYELPAPSSGQKND 99
Query: 66 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123
+ AW +CV NSM+QLEHQ+ RI NL+LM +YG WK L + +Q +L +R
Sbjct: 100 MTAWQDCVNNSMAQLEHQAVRIENLELMAQYGTNAWKMSNDNLALMIENSQKELQNVR 157
>sp|Q54SG7|SPF27_DICDI Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27
PE=3 SV=2
Length = 226
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 1 MVEEETRRYRPTKNYLEHIPP-LDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPP 59
++ +E + P +YL +P +DI+ + + DF+R+++ M+ + RYK+ +P
Sbjct: 32 LISDEMSTFTPP-DYLAQLPSFIDIDYNNFQFLENDFKRMEKEEKMKEFDIGRYKV-EPT 89
Query: 60 TGKMS---DIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTL 108
T + + W + + N+ SQLEHQ R +NL+L+ YG +WK YL L
Sbjct: 90 TTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLELLQRYGGNSWKLYLSDL 141
>sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana
GN=MOS4 PE=1 SV=1
Length = 253
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 1 MVEEETRRY-RPTKNYLEHIPPLDINKFET-EIMRKDFERIQQRLPMEPLSM---IRYKL 55
+VEEE RR + ++L+ +PPL F+ ++ K++ER++ P P+ + RYKL
Sbjct: 52 LVEEEMRRSSKKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKP--PVRIDFESRYKL 109
Query: 56 PQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKE 103
PP K +D AAW + ++ + L+ + + NL+LM + GPE W++
Sbjct: 110 EMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQ 157
>sp|Q8DNL8|GALT1_STRR6 Galactose-1-phosphate uridylyltransferase 1 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=galT1 PE=3 SV=1
Length = 491
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 17 EHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIR 52
+HI P++ KFE+E KDFE + + P+S+IR
Sbjct: 271 KHIFPMEKAKFESEFRFKDFEDVNAGIVKWPMSVIR 306
>sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rna14 PE=3 SV=1
Length = 733
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 40 QQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLM--LEYG 97
++RLP + + +R K+ + P +DI++W VE S+ +H+ R Q++ Y
Sbjct: 49 RKRLPNDLVGQLRDKIQENP----NDISSWYALVEEYGSKGKHEELRETYEQMLRPFPYV 104
Query: 98 PETWKEYLQT 107
P W +Y+ +
Sbjct: 105 PRVWVDYISS 114
>sp|Q97P15|GALT1_STRPN Galactose-1-phosphate uridylyltransferase 1 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=galT1 PE=3 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 17 EHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYK 54
+HI P++ KFE+E KDFE + + P+S+IR +
Sbjct: 271 KHIFPMEKAKFESEFCFKDFEDVNAGIVKWPMSVIRLQ 308
>sp|Q9K6K1|RBSK_BACHD Ribokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125) GN=rbsK PE=3 SV=1
Length = 294
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 MVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSM---------I 51
++ + R TK EH+ P + FE E+ D +Q +P+E ++ +
Sbjct: 100 LLSDRDNRIIVTKGANEHVTPDYVAAFEQELAASDVVLLQLEIPLETVAYVLEFCAKHHV 159
Query: 52 RYKLPQPPTGKMSDIAAWTEC 72
L P K+ D AAWT+
Sbjct: 160 TTVLNPAPAQKLPD-AAWTDA 179
>sp|Q9CQ33|LZTR1_MOUSE Leucine-zipper-like transcriptional regulator 1 OS=Mus musculus
GN=Lztr1 PE=2 SV=2
Length = 837
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 27 FETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTR 86
F IM K+FER+ L +E + + P+ P+ + DI T +++ + LE +
Sbjct: 605 FNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPSDQPVDIG--TSLIQDMKAYLEGAGSE 662
Query: 87 IVNLQLMLEYGP 98
++ L+L+ P
Sbjct: 663 FCDITLLLDGQP 674
>sp|A0M2N6|MNME_GRAFK tRNA modification GTPase MnmE OS=Gramella forsetii (strain KT0803)
GN=mnmE PE=3 SV=1
Length = 474
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 15 YLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVE 74
YL + +N+ + +R + E+I+ + P +PL +I K T +++D E +
Sbjct: 306 YLVDSSQIAVNRERLQQVRIEIEKIKNKFPQKPLLIIANK-----TDRLAD-----EEIH 355
Query: 75 NSMSQLEHQSTRIVNLQLML-----EYGPETWKEYLQTLVN 110
N ++LE S+ Q +L G E KE L VN
Sbjct: 356 NLKTKLEEISSHAERAQFLLLSAKTNLGVEELKEKLLEYVN 396
>sp|Q83GK5|SYT_TROWT Threonine--tRNA ligase OS=Tropheryma whipplei (strain Twist)
GN=thrS PE=3 SV=1
Length = 640
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 18 HIPPLD--INKFETEIMRKDFERIQQRLPMEPLSMIRYKLP 56
HIP L+ +++F + ++R + +Q RLP + S ++ K+P
Sbjct: 542 HIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIP 582
>sp|Q83HM3|SYT_TROW8 Threonine--tRNA ligase OS=Tropheryma whipplei (strain TW08/27)
GN=thrS PE=3 SV=1
Length = 640
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 18 HIPPLD--INKFETEIMRKDFERIQQRLPMEPLSMIRYKLP 56
HIP L+ +++F + ++R + +Q RLP + S ++ K+P
Sbjct: 542 HIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIP 582
>sp|Q8SRY1|G6PI_ENCCU Probable glucose-6-phosphate isomerase OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU05_0650 PE=1 SV=1
Length = 508
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 74 ENSMSQLEHQSTRIVNLQLMLEYGP-ETWKEYLQTLV-NCVSQAQSKLI 120
++S QL HQ TR V ++L++ P KEY +V NC++Q++ ++
Sbjct: 364 QHSFFQLLHQGTRDVLVELLMPLKPLHEEKEYHNMVVSNCLAQSRGLMV 412
>sp|Q5R4Q7|LZTR1_PONAB Leucine-zipper-like transcriptional regulator 1 OS=Pongo abelii
GN=LZTR1 PE=2 SV=1
Length = 840
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 27 FETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTR 86
F IM K+FER+ L +E + + P+ P+ + DI T +++ + LE
Sbjct: 608 FNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPSDQPVDIG--TSLIQDMKAYLEGAGAE 665
Query: 87 IVNLQLMLEYGP 98
++ L+L+ P
Sbjct: 666 FCDITLLLDGHP 677
>sp|B7ZRU9|EVI1A_XENLA MDS1 and EVI1 complex locus protein EVI1-A OS=Xenopus laevis
GN=mecom-a PE=1 SV=1
Length = 1055
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 38 RIQQRLPMEPLSMIRYKLPQPPTG-------KMSDIAAWTECVENSMSQLE 81
R+++R PM+PL +++ K +P G M D W +EN +LE
Sbjct: 643 RVEKRKPMDPLEILKEKYLRPSPGFLFHPQFPMPDQRTWMSAIENMAEKLE 693
>sp|Q134S5|RS7_RHOPS 30S ribosomal protein S7 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rpsG PE=3 SV=1
Length = 156
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 24 INKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQ 83
+ KF +M + + +R+ L +I K QPP G + + ++N M +E +
Sbjct: 23 VTKFMNSVMYAGKKSVAERIVYGALDLIEAKTKQPPLG------VFEQALDNVMPAIEVR 76
Query: 84 STRI 87
S R+
Sbjct: 77 SRRV 80
>sp|Q2YUJ9|ATPA_STAAB ATP synthase subunit alpha OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|P63676|ATPA_STAAW ATP synthase subunit alpha OS=Staphylococcus aureus (strain MW2)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|A8YY72|ATPA_STAAT ATP synthase subunit alpha OS=Staphylococcus aureus (strain USA300
/ TCH1516) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q6G7K5|ATPA_STAAS ATP synthase subunit alpha OS=Staphylococcus aureus (strain
MSSA476) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q6GEX0|ATPA_STAAR ATP synthase subunit alpha OS=Staphylococcus aureus (strain
MRSA252) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|P99111|ATPA_STAAN ATP synthase subunit alpha OS=Staphylococcus aureus (strain N315)
GN=atpA PE=1 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|P63675|ATPA_STAAM ATP synthase subunit alpha OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=atpA PE=1 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|A6QIU9|ATPA_STAAE ATP synthase subunit alpha OS=Staphylococcus aureus (strain Newman)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q5HE95|ATPA_STAAC ATP synthase subunit alpha OS=Staphylococcus aureus (strain COL)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|A5IUQ0|ATPA_STAA9 ATP synthase subunit alpha OS=Staphylococcus aureus (strain JH9)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q2FWE8|ATPA_STAA8 ATP synthase subunit alpha OS=Staphylococcus aureus (strain NCTC
8325) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q2FF22|ATPA_STAA3 ATP synthase subunit alpha OS=Staphylococcus aureus (strain USA300)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|A6U3J0|ATPA_STAA2 ATP synthase subunit alpha OS=Staphylococcus aureus (strain JH1)
GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|A7X4U5|ATPA_STAA1 ATP synthase subunit alpha OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=atpA PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 YRPTKNYLEHIPPLDINKFETEI 31
Y TK YL+ IP +DI +FE E+
Sbjct: 438 YALTKGYLDDIPVVDITRFEDEL 460
>sp|Q8N653|LZTR1_HUMAN Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens
GN=LZTR1 PE=2 SV=2
Length = 840
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 27 FETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTR 86
F IM K+FER+ L +E + + P+ P + DI T +++ + LE
Sbjct: 608 FNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPLDQPVDIG--TSLIQDMKAYLEGAGAE 665
Query: 87 IVNLQLMLEYGP 98
++ L+L+ P
Sbjct: 666 FCDITLLLDGHP 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,888,092
Number of Sequences: 539616
Number of extensions: 1594994
Number of successful extensions: 4671
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4641
Number of HSP's gapped (non-prelim): 40
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)