Query psy12404
Match_columns 123
No_of_seqs 102 out of 158
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:21:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3096|consensus 100.0 2E-44 4.2E-49 276.8 10.3 123 1-123 29-151 (225)
2 PF05700 BCAS2: Breast carcino 100.0 2.7E-42 6E-47 268.2 12.4 123 1-123 31-156 (221)
3 PF12548 DUF3740: Sulfatase pr 55.8 16 0.00034 27.1 3.3 26 98-123 101-126 (145)
4 PF06305 DUF1049: Protein of u 45.6 37 0.0008 20.9 3.4 24 100-123 45-68 (68)
5 PF12180 EABR: TSG101 and ALIX 42.7 54 0.0012 18.8 3.4 22 100-121 13-34 (35)
6 PRK13291 metal-dependent hydro 34.2 27 0.00059 25.9 1.7 51 52-104 10-60 (173)
7 PF03233 Cauli_AT: Aphid trans 32.9 73 0.0016 24.2 3.8 45 78-123 111-155 (163)
8 smart00340 HALZ homeobox assoc 29.8 56 0.0012 19.6 2.2 18 106-123 15-32 (44)
9 PF11393 IcmL: Macrophage kill 24.6 2.4E+02 0.0052 19.3 5.4 55 62-117 16-73 (108)
10 TIGR00999 8a0102 Membrane Fusi 24.2 3.2E+02 0.0069 20.6 6.9 48 37-97 2-49 (265)
11 PF11932 DUF3450: Protein of u 24.1 3.5E+02 0.0075 21.0 7.1 21 102-122 69-89 (251)
12 PF10660 MitoNEET_N: Iron-cont 23.7 26 0.00057 22.6 0.0 11 14-24 14-24 (64)
13 PF07304 SRA1: Steroid recepto 22.8 1.7E+02 0.0036 21.6 4.2 47 73-119 97-145 (157)
14 PRK15030 multidrug efflux syst 22.5 1.7E+02 0.0037 24.2 4.6 42 37-87 85-126 (397)
15 PF12980 DUF3864: Domain of Un 21.3 30 0.00065 23.1 -0.1 13 44-56 14-26 (82)
16 KOG2412|consensus 20.2 1.2E+02 0.0025 27.5 3.2 28 89-116 534-561 (591)
No 1
>KOG3096|consensus
Probab=100.00 E-value=2e-44 Score=276.77 Aligned_cols=123 Identities=51% Similarity=0.828 Sum_probs=120.9
Q ss_pred ChHhhhcccCCCCCCcCCCCCCCCCcccchHHHHHHHHHhhCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHH
Q psy12404 1 MVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQL 80 (123)
Q Consensus 1 LIeeEm~~~~p~~~yL~~LP~p~~~~f~tp~l~~E~eRv~~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~ql 80 (123)
|||+||+||+|+++|+.++|.|++++|.||+|.+||+|+.++.||..+|||||++|.||+++.+|..+|+++|.|+++|+
T Consensus 29 lVEeE~rr~rptknyl~~lp~p~~s~f~t~~m~ne~er~~~k~pm~~l~msRyelp~Ppagkr~d~~aW~e~l~ns~aql 108 (225)
T KOG3096|consen 29 LVEEECRRYRPTKNYLDHLPLPDYSAFLTDRMENEFERAGKKEPMEALDMSRYELPAPPAGKRNDDAAWQESLLNSMAQL 108 (225)
T ss_pred HHHHHHHhhcchhhhhhcCCCcccchhhhhHHHHHHHHHhccCcchhhhHHhhcCCCCCcCccchHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12404 81 EHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 81 ehq~~R~~NLeLl~~yG~naW~~~n~~Le~~l~~~ek~l~~~k 123 (123)
|||.+|++|||||++||+++|+.+|+.||+++.++|++|+++|
T Consensus 109 Ehq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~k 151 (225)
T KOG3096|consen 109 EHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTK 151 (225)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875
No 2
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=100.00 E-value=2.7e-42 Score=268.22 Aligned_cols=123 Identities=43% Similarity=0.831 Sum_probs=117.6
Q ss_pred ChHhhhcccCCCCCCcCCCCC---CCCCcccchHHHHHHHHHhhCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHH
Q psy12404 1 MVEEETRRYRPTKNYLEHIPP---LDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSM 77 (123)
Q Consensus 1 LIeeEm~~~~p~~~yL~~LP~---p~~~~f~tp~l~~E~eRv~~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~ 77 (123)
||++||++++|+++||+.||+ |+++.|.||+|++||+||++|+||.+|||+||++|+||+++.+|+++|++||+||+
T Consensus 31 lI~eE~~~~~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~ 110 (221)
T PF05700_consen 31 LIEEEMRRYRPTKNYLPHLPPPPEPPFSAFETPLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAY 110 (221)
T ss_pred HHHHHHhhcCCCchhHHhCCCCCCCCcccccchhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHH
Confidence 799999988899999999998 66667889999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12404 78 SQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 78 ~qlehq~~R~~NLeLl~~yG~naW~~~n~~Le~~l~~~ek~l~~~k 123 (123)
++++||.+|++|||||.+||+|+|++||++|++++++++++|+++|
T Consensus 111 a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k 156 (221)
T PF05700_consen 111 AQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLK 156 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999874
No 3
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=55.77 E-value=16 Score=27.12 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12404 98 PETWKEYLQTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 98 ~naW~~~n~~Le~~l~~~ek~l~~~k 123 (123)
.+||+.|-.++++.++.|+..|..+|
T Consensus 101 ~~aWk~hr~~ID~eIe~Lq~Ki~~LK 126 (145)
T PF12548_consen 101 PKAWKDHRLHIDHEIETLQDKIKNLK 126 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999988776654
No 4
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.63 E-value=37 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q psy12404 100 TWKEYLQTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 100 aW~~~n~~Le~~l~~~ek~l~~~k 123 (123)
.++..++.+...++.+|++++++|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677888899999999998875
No 5
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=42.71 E-value=54 Score=18.80 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12404 100 TWKEYLQTLVNCVSQAQSKLIQ 121 (123)
Q Consensus 100 aW~~~n~~Le~~l~~~ek~l~~ 121 (123)
-|..|+.+-|+.++.+-..+.+
T Consensus 13 qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 13 QWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhc
Confidence 5999999999999999887765
No 6
>PRK13291 metal-dependent hydrolase; Provisional
Probab=34.17 E-value=27 Score=25.89 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=36.1
Q ss_pred ccCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Q psy12404 52 RYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEY 104 (123)
Q Consensus 52 RY~l~~pp~~~~~d~~aW~~al~na~~qlehq~~R~~NLeLl~~yG~naW~~~ 104 (123)
.|++|.+. ...+++.|-+.++....++.+.-.-+.-=++-.+|++..|.+.
T Consensus 10 ~~~~~~~~--~~~~~~~~i~~l~~~~~~l~~~l~~lsee~l~~~~~~gkWSi~ 60 (173)
T PRK13291 10 QFQYPEEI--TEEQIQEWIAEIEALPNELRAAVSGLSDEQLDTPYREGGWTVR 60 (173)
T ss_pred CCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHcCCCCCCCCcHH
Confidence 34444443 2357888888888888888877777766677777888888764
No 7
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=32.87 E-value=73 Score=24.22 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12404 78 SQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 78 ~qlehq~~R~~NLeLl~~yG~naW~~~n~~Le~~l~~~ek~l~~~k 123 (123)
-.|++...|+-||+=..+.=+.- .+-+.+++.+++..++.|.+++
T Consensus 111 ~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~IKd~de~L~~I~ 155 (163)
T PF03233_consen 111 PTLEEISNKIRKLETEVKKLKDN-IVTEKLIEELIKDFDERLKEIR 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHHHHHHHHHHHHHH
Confidence 45788888999999988876666 8999999999999999998764
No 8
>smart00340 HALZ homeobox associated leucin zipper.
Probab=29.77 E-value=56 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy12404 106 QTLVNCVSQAQSKLIQLR 123 (123)
Q Consensus 106 ~~Le~~l~~~ek~l~~~k 123 (123)
..|...-++++++++++|
T Consensus 15 e~LteeNrRL~ke~~eLr 32 (44)
T smart00340 15 ESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777788888888765
No 9
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=24.57 E-value=2.4e+02 Score=19.31 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=38.4
Q ss_pred CcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH--HHHHHHH
Q psy12404 62 KMSDIAAW-TECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVN--CVSQAQS 117 (123)
Q Consensus 62 ~~~d~~aW-~~al~na~~qlehq~~R~~NLeLl~~yG~naW~~~n~~Le~--~l~~~ek 117 (123)
...++-+| ++|+-+++. +-+..-|..==++-..|-.+.|.-+...|+. .++.+.+
T Consensus 16 s~~~v~~wa~~ai~~~fs-~Df~~y~~ql~~~~~~fT~~g~~~f~~aL~~Sg~l~~ik~ 73 (108)
T PF11393_consen 16 SDAEVLQWAQEAITAAFS-YDFVNYRQQLNDARKCFTDEGWNSFQKALQKSGILDAIKD 73 (108)
T ss_pred CHHHHHHHHHHHHHHHhC-cCHHhHHHHHHHHHHhcCHHHHHHHHHHHHHCCCHHHHHh
Confidence 34678888 558887774 4555555444455677999999999999976 6665544
No 10
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=24.16 E-value=3.2e+02 Score=20.61 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=28.0
Q ss_pred HHHhhCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12404 37 ERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYG 97 (123)
Q Consensus 37 eRv~~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~qlehq~~R~~NLeLl~~yG 97 (123)
++|+.|+.+-.+|-..+ ..-+..+..|+++++.......-.+-|.+-|
T Consensus 2 ~~VkkG~~L~~ld~~~~-------------~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~ 49 (265)
T TIGR00999 2 DPVKKGQVLAVVDSPEL-------------AKMAAELKVAQKRVELARKTYEREKKLFEQG 49 (265)
T ss_pred CcccCCCEEEEEccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36778888777775333 2233456666666666655555555555544
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.12 E-value=3.5e+02 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy12404 102 KEYLQTLVNCVSQAQSKLIQL 122 (123)
Q Consensus 102 ~~~n~~Le~~l~~~ek~l~~~ 122 (123)
..+|.+++..+...+++++++
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887765
No 12
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=23.67 E-value=26 Score=22.57 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=0.0
Q ss_pred CCcCCCCCCCC
Q psy12404 14 NYLEHIPPLDI 24 (123)
Q Consensus 14 ~yL~~LP~p~~ 24 (123)
|||+.||.|++
T Consensus 14 ~YL~~lPiP~s 24 (64)
T PF10660_consen 14 NYLKSLPIPDS 24 (64)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 79999999984
No 13
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=22.84 E-value=1.7e+02 Score=21.63 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHH
Q psy12404 73 VENSMSQLEHQSTRIVNLQLMLEYG--PETWKEYLQTLVNCVSQAQSKL 119 (123)
Q Consensus 73 l~na~~qlehq~~R~~NLeLl~~yG--~naW~~~n~~Le~~l~~~ek~l 119 (123)
|-.|-..-.|...-.++.+||..|+ +..|.++.++|=.+.+.+-.+.
T Consensus 97 L~~aL~~~d~~~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~~~r~~~~~~ 145 (157)
T PF07304_consen 97 LAQALQARDYDAADEIHVDLMTDHVDECGNWMVGVKRLIAMARNLPPEL 145 (157)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHSSHHHHTTTHHHHHHHHHHHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 3344445567778889999999998 5679999999999998875543
No 14
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.50 E-value=1.7e+02 Score=24.25 Aligned_cols=42 Identities=5% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHhhCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy12404 37 ERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRI 87 (123)
Q Consensus 37 eRv~~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~qlehq~~R~ 87 (123)
++|.+|+.+-.||-..|++ .+.+-+..+..|+++++......
T Consensus 85 d~VkkGqvLa~ld~~~~~~---------~l~~a~A~l~~A~a~l~~a~~~~ 126 (397)
T PRK15030 85 SDIEAGVSLYQIDPATYQA---------TYDSAKGDLAKAQAAANIAQLTV 126 (397)
T ss_pred CEecCCCEEEEECCHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778777787655532 34455666777777666544433
No 15
>PF12980 DUF3864: Domain of Unknown Function with PDB structure (DUF3864); InterPro: IPR024335 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=21.33 E-value=30 Score=23.06 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=8.8
Q ss_pred CCCcCcccccCCC
Q psy12404 44 PMEPLSMIRYKLP 56 (123)
Q Consensus 44 p~~~lD~sRY~l~ 56 (123)
|---||++||.|+
T Consensus 14 payvidftrydl~ 26 (82)
T PF12980_consen 14 PAYVIDFTRYDLK 26 (82)
T ss_dssp --EEEEEEESSS-
T ss_pred CceEeeeeecccc
Confidence 4445999999994
No 16
>KOG2412|consensus
Probab=20.19 E-value=1.2e+02 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHH
Q psy12404 89 NLQLMLEYGPETWKEYLQTLVNCVSQAQ 116 (123)
Q Consensus 89 NLeLl~~yG~naW~~~n~~Le~~l~~~e 116 (123)
=-+||..||..+|++-+..-|+.+.++.
T Consensus 534 G~~L~q~Yg~Qf~Klli~i~E~y~~r~~ 561 (591)
T KOG2412|consen 534 GFGLLQRYGSQFLKLLILIREHYLPRLA 561 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999988888887654
Done!