Query psy12404
Match_columns 123
No_of_seqs 102 out of 158
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rsg_A Collagen type IV alpha- 31.6 18 0.00063 22.0 1.3 15 63-77 79-93 (94)
2 1fmh_A General control protein 26.7 54 0.0019 17.3 2.4 16 103-118 15-30 (33)
3 1m3w_A H10H24; four-helix bund 21.2 1E+02 0.0035 16.1 3.1 24 97-120 3-29 (32)
4 3v3e_B Nuclear receptor subfam 21.0 2.2E+02 0.0077 21.0 5.9 54 29-85 17-70 (257)
5 2er8_A Regulatory protein Leu3 20.2 1E+02 0.0034 18.0 3.1 17 105-121 51-67 (72)
6 3he4_A Synzip6; heterodimeric 19.5 1.5E+02 0.005 17.3 4.8 17 105-121 33-49 (56)
7 1w0t_A Telomeric repeat bindin 18.2 42 0.0014 19.0 0.9 16 90-105 14-29 (53)
8 3tnu_A Keratin, type I cytoske 16.8 2.5E+02 0.0085 18.8 6.6 27 65-91 39-65 (131)
9 1kd8_A GABH AIV, GCN4 acid bas 16.8 1.5E+02 0.0051 16.2 3.3 20 102-121 14-33 (36)
10 2l1s_A Uncharacterized protein 14.4 76 0.0026 20.3 1.6 14 49-62 39-52 (83)
No 1
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=31.61 E-value=18 Score=22.02 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=12.9
Q ss_pred cccHHHHHHHHHHHH
Q psy12404 63 MSDIAAWTECVENSM 77 (123)
Q Consensus 63 ~~d~~aW~~al~na~ 77 (123)
..+..+|-+||++|+
T Consensus 79 ~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 79 PDHRQQWIDAIEQHK 93 (94)
T ss_dssp SCCTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhc
Confidence 368899999999986
No 2
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=26.66 E-value=54 Score=17.30 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12404 103 EYLQTLVNCVSQAQSK 118 (123)
Q Consensus 103 ~~n~~Le~~l~~~ek~ 118 (123)
.-|++||..+.+++.+
T Consensus 15 aenyqleqevaqlehe 30 (33)
T 1fmh_A 15 AENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHh
Confidence 3567777777777654
No 3
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=21.25 E-value=1e+02 Score=16.12 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=14.8
Q ss_pred ChHHHHHHHHH---HHHHHHHHHHHHH
Q psy12404 97 GPETWKEYLQT---LVNCVSQAQSKLI 120 (123)
Q Consensus 97 G~naW~~~n~~---Le~~l~~~ek~l~ 120 (123)
|.+.|++|-.- +|..++--+..|.
T Consensus 3 ggeiwklheeflkkfeellklheerlk 29 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEELLKLHEERLK 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889998754 4455554444443
No 4
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=21.03 E-value=2.2e+02 Score=20.96 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred chHHHHHHHHHhhCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q psy12404 29 TEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQST 85 (123)
Q Consensus 29 tp~l~~E~eRv~~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~qlehq~~ 85 (123)
+.+++++. ........+|.++|.-..++.....+.+.|+..-+.+-..++....
T Consensus 17 ~~lv~Ah~---~t~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~iV~ 70 (257)
T 3v3e_B 17 TSLVRAHL---DSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRK 70 (257)
T ss_dssp HHHHHHHH---HTSCCGGGCBCTTCCSCCSCCCSCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhh---ccCccccccccccccCcCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44554443 3444457799999986655555567888898877766666555443
No 5
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.23 E-value=1e+02 Score=18.02 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12404 105 LQTLVNCVSQAQSKLIQ 121 (123)
Q Consensus 105 n~~Le~~l~~~ek~l~~ 121 (123)
...||..+..++..|+.
T Consensus 51 ~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 51 NEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 6
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=19.50 E-value=1.5e+02 Score=17.30 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12404 105 LQTLVNCVSQAQSKLIQ 121 (123)
Q Consensus 105 n~~Le~~l~~~ek~l~~ 121 (123)
|..||.-+..++|+++.
T Consensus 33 nanlekdianlekdian 49 (56)
T 3he4_A 33 NANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 44555555556655543
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=18.20 E-value=42 Score=18.97 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=11.9
Q ss_pred HHHHHhhChHHHHHHH
Q psy12404 90 LQLMLEYGPETWKEYL 105 (123)
Q Consensus 90 LeLl~~yG~naW~~~n 105 (123)
+++..+||.+-|..=.
T Consensus 14 ~~~v~~~G~~~W~~Ia 29 (53)
T 1w0t_A 14 RSGVRKYGEGNWSKIL 29 (53)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCcCCHHHHH
Confidence 4577899988897643
No 8
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=16.82 E-value=2.5e+02 Score=18.79 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12404 65 DIAAWTECVENSMSQLEHQSTRIVNLQ 91 (123)
Q Consensus 65 d~~aW~~al~na~~qlehq~~R~~NLe 91 (123)
.+...+..|+.-.+.++-+......||
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455666666666666655555554
No 9
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=16.77 E-value=1.5e+02 Score=16.22 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12404 102 KEYLQTLVNCVSQAQSKLIQ 121 (123)
Q Consensus 102 ~~~n~~Le~~l~~~ek~l~~ 121 (123)
...|+.|++.+.++++.|.+
T Consensus 14 l~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 14 ESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhcc
Confidence 34678888888888887754
No 10
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=14.36 E-value=76 Score=20.32 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.3
Q ss_pred cccccCCCCCCCCC
Q psy12404 49 SMIRYKLPQPPTGK 62 (123)
Q Consensus 49 D~sRY~l~~pp~~~ 62 (123)
|-.+|.|++||.+.
T Consensus 39 Dw~~~~L~~PPrGy 52 (83)
T 2l1s_A 39 QWQQRNLPAPDAGS 52 (83)
T ss_dssp CCTTSSCCCCCTTE
T ss_pred CHhHCCCCccCCCC
Confidence 67889999998763
Done!