Query psy12404
Match_columns 123
No_of_seqs 102 out of 158
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 18:22:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cp8a1 a.5.2.1 (A:8-48) Migra 60.5 3.6 0.00026 22.1 2.7 23 85-107 16-38 (41)
2 d1wjpa2 g.37.1.1 (A:43-66) Zin 41.5 9.1 0.00066 18.3 2.1 13 26-38 9-21 (26)
3 d2qw4a1 a.123.1.1 (A:32-264) O 31.5 70 0.0051 21.5 6.6 46 45-90 17-62 (233)
4 d1ovla_ a.123.1.1 (A:) Orphan 17.2 1.4E+02 0.0099 20.1 5.7 42 41-82 13-54 (236)
5 d1unqa_ b.55.1.1 (A:) Rac-alph 15.7 52 0.0038 18.7 2.7 21 63-83 94-114 (118)
6 d1w0ta_ a.4.1.4 (A:) DNA-bindi 14.6 27 0.002 18.6 0.9 15 90-104 14-28 (52)
7 d1ilea3 c.26.1.1 (A:1-197,A:38 14.3 33 0.0024 24.9 1.6 16 90-105 414-429 (452)
8 d2coaa1 b.55.1.1 (A:8-119) Pro 14.3 44 0.0032 19.6 2.0 14 63-76 97-110 (112)
9 d2o35a1 a.293.1.1 (A:2-80) Hyp 13.8 43 0.0032 20.0 1.8 21 77-97 17-39 (79)
10 d1guua_ a.4.1.3 (A:) c-Myb, DN 13.5 27 0.002 18.4 0.7 17 90-106 13-29 (50)
No 1
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.51 E-value=3.6 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhChHHHHHHHHH
Q psy12404 85 TRIVNLQLMLEYGPETWKEYLQT 107 (123)
Q Consensus 85 ~R~~NLeLl~~yG~naW~~~n~~ 107 (123)
.|..|+.||.||+-|.=.+-+..
T Consensus 16 DR~lNq~LL~KH~~nl~~vV~eL 38 (41)
T d2cp8a1 16 DRQLNLRLLKKHNYNILQVVTEL 38 (41)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHH
T ss_pred hhHHHHHHHHHccCcHHHHHHHH
Confidence 58899999999998865554443
No 2
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.48 E-value=9.1 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=11.0
Q ss_pred cccchHHHHHHHH
Q psy12404 26 KFETEIMRKDFER 38 (123)
Q Consensus 26 ~f~tp~l~~E~eR 38 (123)
.|++|.|+.|.+-
T Consensus 9 rf~sp~lk~ehe~ 21 (26)
T d1wjpa2 9 RFFSPELKQEHES 21 (26)
T ss_dssp CBSSHHHHHHHHH
T ss_pred eeCCHHHhhHhhh
Confidence 3789999999874
No 3
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.48 E-value=70 Score=21.51 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=34.9
Q ss_pred CCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12404 45 MEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNL 90 (123)
Q Consensus 45 ~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~qlehq~~R~~NL 90 (123)
...+|.+.|..+.+|.....+.+.|+..-+.+-..+++...-..++
T Consensus 17 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iv~wAK~i 62 (233)
T d2qw4a1 17 TAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKI 62 (233)
T ss_dssp SSSCCCTTCCCCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhccCcccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678999998877777667788999988888877777766554443
No 4
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.25 E-value=1.4e+02 Score=20.06 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=22.8
Q ss_pred hCCCCCcCcccccCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy12404 41 QRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEH 82 (123)
Q Consensus 41 ~~~p~~~lD~sRY~l~~pp~~~~~d~~aW~~al~na~~qleh 82 (123)
....+..+|.++|..+++......+.+.|+..-+..-...+.
T Consensus 13 t~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~ 54 (236)
T d1ovla_ 13 SNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEI 54 (236)
T ss_dssp TSCCTTSCBCTTCCCC--------CHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 344568899999986655555557888887765544444433
No 5
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.69 E-value=52 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q psy12404 63 MSDIAAWTECVENSMSQLEHQ 83 (123)
Q Consensus 63 ~~d~~aW~~al~na~~qlehq 83 (123)
..+..+|-+||+++-.++...
T Consensus 94 ~~e~~~Wi~ai~~~~~~~~~~ 114 (118)
T d1unqa_ 94 PEEREEWTTAIQTVADGLKKQ 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 468889999999987765543
No 6
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.56 E-value=27 Score=18.61 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.4
Q ss_pred HHHHHhhChHHHHHH
Q psy12404 90 LQLMLEYGPETWKEY 104 (123)
Q Consensus 90 LeLl~~yG~naW~~~ 104 (123)
++++.+||...|..=
T Consensus 14 ~~~v~~~G~~~W~~I 28 (52)
T d1w0ta_ 14 RSGVRKYGEGNWSKI 28 (52)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHHHCCCCHHHH
Confidence 467889999889543
No 7
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=14.30 E-value=33 Score=24.94 Aligned_cols=16 Identities=13% Similarity=0.586 Sum_probs=13.3
Q ss_pred HHHHHhhChHHHHHHH
Q psy12404 90 LQLMLEYGPETWKEYL 105 (123)
Q Consensus 90 LeLl~~yG~naW~~~n 105 (123)
.++|++||++++|.+.
T Consensus 414 ~dll~~ygaD~lR~yl 429 (452)
T d1ilea3 414 WDIIRKFGADALRWYI 429 (452)
T ss_dssp HHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHH
Confidence 4688899999999764
No 8
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.26 E-value=44 Score=19.58 Aligned_cols=14 Identities=7% Similarity=0.432 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHHH
Q psy12404 63 MSDIAAWTECVENS 76 (123)
Q Consensus 63 ~~d~~aW~~al~na 76 (123)
..+..+|.+||++|
T Consensus 97 ~~~~~~W~~aI~~A 110 (112)
T d2coaa1 97 AEAARGWETAIRQA 110 (112)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 35777899999987
No 9
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=13.80 E-value=43 Score=19.99 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHH--HHHHHHHHhhC
Q psy12404 77 MSQLEHQSTR--IVNLQLMLEYG 97 (123)
Q Consensus 77 ~~qlehq~~R--~~NLeLl~~yG 97 (123)
+..+.|+..| ..|++||+=-|
T Consensus 17 rrL~~HL~~r~dVQNIDLMnLaG 39 (79)
T d2o35a1 17 RRLLEHLRERSDVQNIDLMNLAG 39 (79)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHS
T ss_pred HHHHHHHHhCccchhhHHHHHHH
Confidence 3467788888 78999998655
No 10
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.48 E-value=27 Score=18.39 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=12.2
Q ss_pred HHHHHhhChHHHHHHHH
Q psy12404 90 LQLMLEYGPETWKEYLQ 106 (123)
Q Consensus 90 LeLl~~yG~naW~~~n~ 106 (123)
++++.+||.+-|..=..
T Consensus 13 ~~~v~~~g~~~W~~Ia~ 29 (50)
T d1guua_ 13 KKLVEQNGTDDWKVIAN 29 (50)
T ss_dssp HHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHCCCCHHHHHH
Confidence 45788999887875443
Done!