RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12404
(123 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.034
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 40/134 (29%)
Query: 1 MVEEETRRYRPTKNY----LEHIPPLDINKFETEIMRKDFERI-----QQRLPMEPLSMI 51
+ + + K+ L I +N E RK F+R+ +P LS+I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 52 RYKLPQPPTGKMSDIAAW----TECVENSMSQLEHQS----------TRIVNLQLMLEYG 97
W V +++L S I ++ L L+
Sbjct: 396 -----------------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 98 PETWKEYLQTLVNC 111
E +++V+
Sbjct: 439 LENEYALHRSIVDH 452
Score = 29.1 bits (64), Expect = 0.35
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 67 AAWTECVENSMSQLEHQSTRIVNLQL-----MLEYGPETWKEYLQTLVNCVSQA-QSKLI 120
+ +C L + +L + G TW + + ++ +S L
Sbjct: 308 LKYLDC---RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 121 QL 122
L
Sbjct: 365 VL 366
Score = 29.1 bits (64), Expect = 0.46
Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 40/129 (31%)
Query: 8 RYRPTKNY-LEHIPPLDINKF----------------ETEIMRK---DFERIQQRL---- 43
Y K + + + P ++++ + R DF ++Q++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 44 -----PMEPLSMI----RYK---LPQPPT--GKMSDIAAWTECVENSMSQLEHQSTRIVN 89
L+ + YK P ++ I + +E ++ + + T ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLR 569
Query: 90 LQLMLEYGP 98
+ LM E
Sbjct: 570 IALMAEDEA 578
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 26.9 bits (60), Expect = 2.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 9 YRPTKNYLEHIPPLDINKFETEIM 32
+ + YL + I FE ++
Sbjct: 449 FAAERGYLADVELSKIGSFEAALL 472
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 26.9 bits (60), Expect = 2.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 9 YRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAA 68
Y T +++ IP D+ +FE E++ F R + L IR TG++ D
Sbjct: 438 YAVTNGFMDDIPVEDVRRFEEELL--SFMRANKD---SLLDHIR------QTGELPDTKE 486
Query: 69 WTECVEN 75
+E
Sbjct: 487 LDAAIEE 493
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 26.5 bits (59), Expect = 2.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 9 YRPTKNYLEHIPPLDINKFETEIM 32
Y + YL+ + P I KFE +
Sbjct: 446 YAGVRGYLDKLEPSKITKFENAFL 469
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 26.5 bits (59), Expect = 2.4
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 9 YRPTKNYLEHIPPLDINKFETEIM 32
+ + YL+ +P ++ +FE E +
Sbjct: 451 FAGVRGYLDDLPVEEVRRFEKEFL 474
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 26.5 bits (59), Expect = 2.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 9 YRPTKNYLEHIPPLDINKFETEIM 32
Y T YL+ + + K+ E+
Sbjct: 439 YTGTNGYLDSLELDQVRKYLVELR 462
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
replication, allosteric enzyme, nucleotide-binding,
cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
{Homo sapiens}
Length = 676
Score = 25.5 bits (56), Expect = 5.6
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 59 PTGKMSDIAAWTECVENSMSQLEHQST-----RIVNLQLM 93
PT + I E +E S + + +IVN L+
Sbjct: 530 PTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLL 569
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 25.3 bits (56), Expect = 6.2
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 6 TRRYRPTKNYLEHIPPL 22
+ + R + PP+
Sbjct: 304 SVKLRTGVDRGAQAPPV 320
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
ribonucleotide reductase, allosteric enzyme, binding,
DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
3hnd_A* 3hne_A* 3hnf_A*
Length = 792
Score = 25.2 bits (55), Expect = 6.8
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 59 PTGKMSDIAAWTECVENSMSQLEHQST-----RIVNLQLM 93
PT + I E +E S + + +IVN L+
Sbjct: 603 PTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLL 642
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 8.4
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 28/102 (27%)
Query: 10 RPTKNYLEHIP---PLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDI 66
P K+YL IP PL I ++ + + L P + + TG +
Sbjct: 225 TPDKDYLLSIPISCPL-I--GVIQLAH--YVVTAKLLGFTPGEL--RSYLKGATGHSQGL 277
Query: 67 --AA-------WTECVENSMSQLE---------HQSTRIVNL 90
A W + + +++ +L
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,845,223
Number of extensions: 94567
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 19
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)