RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12404
         (123 letters)



>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing
           protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
          Length = 217

 Score = 25.3 bits (55), Expect = 2.4
 Identities = 7/48 (14%), Positives = 19/48 (39%)

Query: 13  KNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPT 60
           +N +       +    +  ++  F+ +     ++ ++ I Y L  PP 
Sbjct: 167 RNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPA 214


>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 259

 Score = 24.5 bits (53), Expect = 4.1
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 16  LEHIPPLDINKFETEIMR---KDFERIQQRLPMEPLSMIR 52
            +  P  ++    T+ +R   K +     R  +  L+  R
Sbjct: 76  DDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEAR 115


>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas
          denitrificans [TaxId: 43306]}
          Length = 209

 Score = 24.0 bits (52), Expect = 5.0
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 20 PPLDINKFETEIMRKDFERIQQRLPMEPLS 49
          P  D  +    I  + F  I+    +   S
Sbjct: 1  PEYDYIRDGNAIYERSFAIIRAEADLSRFS 30


>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
          thermophilus [TaxId: 274]}
          Length = 204

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 30 EIMRKDFERIQQRLPMEPLSMIRYKL 55
           I  + F  + Q       S + + +
Sbjct: 2  AIEEESFRIVDQEAGPHGFSPLEWPV 27


>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 151

 Score = 23.2 bits (50), Expect = 9.5
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 4   EETRRYRPTKNYLEHIPPLDIN 25
           E+         Y+  IPP+++N
Sbjct: 81  EQDMGVDELLEYIAFIPPVEMN 102


>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli
           [TaxId: 562]}
          Length = 123

 Score = 22.8 bits (49), Expect = 10.0
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 75  NSMSQLEHQSTRI--VNLQLMLEYGPETWKEYLQT 107
             +  +  Q   +  +N +L++       + YLQ 
Sbjct: 84  GDVCHIREQLMSVTGINRELLITDLLLRIEHYLQP 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,735
Number of extensions: 19120
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)