BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12410
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 167/255 (65%), Gaps = 4/255 (1%)
Query: 285 FRKDFYVEVPEIARMTPXXXXXXXXXXXGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQ 344
F K+FY E P++AR T I V+G CP+P+ + + ++D + +Q
Sbjct: 3 FEKNFYQEHPDLARRTAQEVETYRRSKE-ITVRGHNCPKPVLNFYEANFPANVMDVIARQ 61
Query: 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404
N+ +PT IQAQ P +SG D++G+A+TGSGKT++++LP + HI QP LE DGP+ ++
Sbjct: 62 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 121
Query: 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDML 464
++PTREL Q+ + A ++ ++ L+ C+YGG QI +L+RG EI + TPGR+ID L
Sbjct: 122 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 181
Query: 465 AANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEAL 524
TNLRR TY+VLDEADRM DMGFEPQ+ +I+D +RPDRQT+M+SAT+P+++ L
Sbjct: 182 ECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 238
Query: 525 ARRILNKPIEIQVGG 539
A L I I +G
Sbjct: 239 AEDFLKDYIHINIGA 253
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 155/226 (68%), Gaps = 3/226 (1%)
Query: 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTG 373
I V+G CP+P+ + + ++D + +QN+ +PT IQAQ P +SG D++G+A+TG
Sbjct: 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 76
Query: 374 SGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433
SGKT++++LP + HI QP LE DGP+ ++++PTREL Q+ + A ++ ++ L+ C+
Sbjct: 77 SGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCI 136
Query: 434 YGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF 493
YGG QI +L+RG EI + TPGR+ID L TNLRR TY+VLDEADRM DMGF
Sbjct: 137 YGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGF 193
Query: 494 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGG 539
EPQ+ +I+D +RPDRQT+M+SAT+P+++ LA L I I +G
Sbjct: 194 EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 169/304 (55%), Gaps = 23/304 (7%)
Query: 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTG 373
+ G CP I++++ + + I+ ++ Y +PTP+Q AIP I RDL+ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 374 SGKTVAFVLPLLRHILDQPPLEETDG-------------PMAIIMSPTRELCMQIGKEAK 420
SGKT AF+LP+L I P E P++++++PTREL +QI +EA+
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480
KF+ +R VYGG I +QI +L+RG ++V TPGR++DM+ G++ L Y+
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYL 179
Query: 481 VLDEADRMFDMGFEPQVMRII--DNVRPD--RQTVMFSATFPRQMEALARRILNKPIEIQ 536
VLDEADRM DMGFEPQ+ RI+ D + P R T+MFSATFP++++ LAR L++ I +
Sbjct: 180 VLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239
Query: 537 VGGRSVVCKEVEQHVIVXXXXXXXXXXXXXXGIYQDQGSVIVFVDKQENADSL---LFHS 593
VG + + Q V+ +VFV+ ++ ADSL L+H
Sbjct: 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 299
Query: 594 MDPC 597
C
Sbjct: 300 GYAC 303
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 156/278 (56%), Gaps = 7/278 (2%)
Query: 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTG 373
++V G P+PI+ + + I+D + K Y+ PTPIQ +IP I SGRDL+ A+TG
Sbjct: 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTG 103
Query: 374 SGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433
SGKT AF+LP+L +L+ P E P +I+SPTREL +QI EA+KF L++ V
Sbjct: 104 SGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIV 163
Query: 434 YGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF 493
YGGT Q + RG +++ TPGR++D + + R ++VLDEADRM DMGF
Sbjct: 164 YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTR---FVVLDEADRMLDMGF 220
Query: 494 EPQVMRIIDNV--RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHV 551
+ RI+ +V RP+ QT+MFSATFP +++ +A L + + +G C +V+Q
Sbjct: 221 SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ-- 278
Query: 552 IVXXXXXXXXXXXXXXGIYQDQGSVIVFVDKQENADSL 589
+ + + IVFV+ + AD L
Sbjct: 279 TIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 316
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 144/235 (61%), Gaps = 11/235 (4%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPL 384
I+ + + + I + + +Y++PTPIQ AIPAI+ RD++ A+TGSGKT AF++P+
Sbjct: 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 81
Query: 385 LRHI----LDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440
+ H+ L+Q +T P +I++PTREL +QI E++KF+ + LR VYGG
Sbjct: 82 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141
Query: 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500
QI E++ G ++V TPGR++D + N +L YIVLDEADRM DMGFEPQ+ +I
Sbjct: 142 SQIREVQMGCHLLVATPGRLVDFIEKNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKI 198
Query: 501 IDNVR----PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHV 551
I+ +RQT+MFSATFP++++ LA L I + VG ++Q +
Sbjct: 199 IEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 137/202 (67%), Gaps = 5/202 (2%)
Query: 337 ILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP-PLE 395
+L ++ + KPTPIQ+QA P I+ G DLI +A+TG+GKT+++++P H+ QP E
Sbjct: 31 LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90
Query: 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
+ +GP ++++PTREL + + E K++ GL+ +C+YGG + QI ++ +G +II+
Sbjct: 91 QRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIA 149
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515
TPGR+ D+ NS NLR +TY+V+DEAD+M DM FEPQ+ +I+ +VRPDRQTVM SA
Sbjct: 150 TPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206
Query: 516 TFPRQMEALARRILNKPIEIQV 537
T+P + LA L P+ + V
Sbjct: 207 TWPDTVRQLALSYLKDPMIVYV 228
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 7/202 (3%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
+IL+AL + PTPIQA A+P + G+DLIG A+TG+GKT+AF LP+ + P E
Sbjct: 11 EILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--APSQE 68
Query: 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
P A++++PTREL +Q+ E L +VV VYGGTG +Q L RGA+ +V
Sbjct: 69 RGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVVA 126
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515
TPGR +D L V +L RV VLDEAD M MGFE +V ++ P RQT++FSA
Sbjct: 127 TPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 183
Query: 516 TFPRQMEALARRILNKPIEIQV 537
T P + LA R + P+ I V
Sbjct: 184 TLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 7/202 (3%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
+IL+AL + PTPI+A A+P + G+DLIG A+TG+GKT+AF LP+ + P E
Sbjct: 11 EILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--APSQE 68
Query: 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
P A++++PTREL +Q+ E L +VV VYGGTG +Q L RGA+ +V
Sbjct: 69 RGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVVA 126
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515
TPGR +D L V +L RV VLDEAD M MGFE +V ++ P RQT++FSA
Sbjct: 127 TPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 183
Query: 516 TFPRQMEALARRILNKPIEIQV 537
T P + LA R + P+ I V
Sbjct: 184 TLPSWAKRLAERYMKNPVLINV 205
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 7/212 (3%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLL 385
KT+ GV+ + +A + + KPT IQ +AIP + GRD+IG+A+TGSGKT AF LP+L
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445
+L+ P A++++PTREL QI ++ + S+G++ + GG Q
Sbjct: 103 NALLETP-----QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157
Query: 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505
L + II+ TPGR+ID L G NLR + Y+V+DEADR+ +M FE +V +I+ +
Sbjct: 158 LAKKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215
Query: 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
DR+T +FSAT ++++ L R L P++ V
Sbjct: 216 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGR-DLIGIAKTGSGKTVAFVLPLL 385
+ + +S IL+A++ + +EKPT IQ + IP ++ +++ A+TGSGKT +F +PL+
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445
+ E +G AII++PTREL +Q+ E + + L++ +YGG I QI
Sbjct: 67 ELV------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 120
Query: 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505
LK A I+V TPGR++D + N G + NL+ V Y +LDEAD + GF V +I++
Sbjct: 121 LK-NANIVVGTPGRILDHI--NRGTL-NLKNVKYFILDEADEXLNXGFIKDVEKILNACN 176
Query: 506 PDRQTVMFSATFPRQMEALARR 527
D++ ++FSAT PR++ LA++
Sbjct: 177 KDKRILLFSATXPREILNLAKK 198
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 123/212 (58%), Gaps = 8/212 (3%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLL 385
T+ + +++L + + +EKP+PIQ +AIP ++GRD++ AK G+GKT AFV+P L
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445
+ +P L + A+IM PTREL +Q + + K G+ + GGT + + I
Sbjct: 81 EKV--KPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505
L I+V TPGR++D+ S +V +L + ++DEAD+M F+ + +I+ +
Sbjct: 136 LNETVHILVGTPGRVLDL---ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 192
Query: 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
P Q+++FSATFP ++ + L+KP EI +
Sbjct: 193 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 224
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 116/201 (57%), Gaps = 6/201 (2%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+SKK L L++ Y T IQ Q I + G+D++G AKTGSGKT+AF++P+L L +
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL-EALYRL 90
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
TDG +I+SPTREL Q + +K K+ + GG + + +E I
Sbjct: 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINNINI 149
Query: 453 IVCTPGRMIDMLAAN-SGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 511
+VCTPGR++ + S T+L+ +VLDEADR+ DMGF + +I+N+ RQT+
Sbjct: 150 LVCTPGRLLQHMDETVSFHATDLQ---MLVLDEADRILDMGFADTMNAVIENLPKKRQTL 206
Query: 512 MFSATFPRQMEALARRILNKP 532
+FSAT + ++ LAR L P
Sbjct: 207 LFSATQTKSVKDLARLSLKNP 227
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 14/237 (5%)
Query: 314 IRVKGKGCPRPIKTWAQCG----VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGI 369
I V+G P PI T+ Q ++ ++L + ++ PTPIQ QAIP ++ GR+L+
Sbjct: 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 72
Query: 370 AKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429
A TGSGKT+AF +P+L L QP G A+I+SPTREL QI +E K ++ G R
Sbjct: 73 APTGSGKTLAFSIPILMQ-LKQP---ANKGFRALIISPTRELASQIHRELIKISEGTGFR 128
Query: 430 VVCVYGGTGISEQIS-ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488
+ ++ +++ + + +I+V TP R+I +L + + +L V ++V+DE+D++
Sbjct: 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDKL 187
Query: 489 FD---MGFEPQVMRIIDNVRPDR-QTVMFSATFPRQMEALARRILNKPIEIQVGGRS 541
F+ GF Q+ I + + MFSATF +E + L+ I + +G R+
Sbjct: 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 117/199 (58%), Gaps = 3/199 (1%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
V++ L A+K+ + T IQ ++I ++ GRDL+ AKTGSGKT+AF++P + I+
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
+ +G +I+SPTREL MQ K+ + GG+ S + +L G I
Sbjct: 121 FMPR-NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINI 179
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512
IV TPGR++D + G + + + +V+DEADR+ D+GFE ++ +II + RQT++
Sbjct: 180 IVATPGRLLDHMQNTPGFM--YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML 237
Query: 513 FSATFPRQMEALARRILNK 531
FSAT R++E LAR L K
Sbjct: 238 FSATQTRKVEDLARISLKK 256
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +QI K + ++ GGT + E I +L
Sbjct: 99 CLDIQ--VRETQ---ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 210
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 256
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +QI K + ++ GGT + E I +L
Sbjct: 98 CLDIQ--VRETQ---ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 152
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 153 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 209
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 210 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 255
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +QI K + ++ GGT + E I +L
Sbjct: 99 CLDIQ--VRETQ---ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 210
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 256
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+ +++L + + +EKP+PIQ ++IP +SGRD++ AK G+GK+ A+++PLL LD
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER-LDL- 67
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAE 451
+ D A+++ PTREL +Q+ + + +K + G +V+ GGT + + I L
Sbjct: 68 ---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH 124
Query: 452 IIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 511
+++ TPGR++D++ +V + V IVLDEAD++ F + II + +RQ +
Sbjct: 125 VVIATPGRILDLIKKGVAKVDH---VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 181
Query: 512 MFSATFPRQMEALARRILNKPIEIQ 536
++SATFP ++ L KP EI
Sbjct: 182 LYSATFPLSVQKFMNSHLEKPYEIN 206
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 17 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 76
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +QI K + ++ GGT + E I +L
Sbjct: 77 CLDIQ--VRETQ---ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 131
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 132 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 188
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 189 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 234
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +Q+ K + ++ GGT + E I +L
Sbjct: 62 CLDIQ--VRETQ---ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 116
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 174 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 219
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I +++G+GKT F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ Q + ET A+I++PTREL +Q+ K + ++ GGT + E I +L
Sbjct: 62 CLDIQ--VRETQ---ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKL 116
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
G ++ TPGR+ DM+ S R R + +VLDEAD M + GF+ Q+ + + P
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
Q V+ SAT P ++ + + + PI I V + + ++Q +
Sbjct: 174 ATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFV 219
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 9/229 (3%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPL 384
+ ++ +S+ +L + +EKP+ IQ +AI + G D+I A++G+GKT F + +
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 385 LRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444
L+ I + L+ T A++++PTREL QI K +G GGT + ++
Sbjct: 99 LQQI--ELDLKATQ---ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 153
Query: 445 ELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 503
+L+ A IIV TPGR+ DML + R + + + VLDEAD M GF+ Q+ I
Sbjct: 154 KLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 210
Query: 504 VRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
+ + Q V+ SAT P + + ++ + PI I V + + + Q I
Sbjct: 211 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 9/229 (3%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPL 384
+ ++ +S+ +L + +EKP+ IQ +AI + G D+I A++G+GKT F + +
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 72
Query: 385 LRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444
L+ I + L+ T A++++PTREL QI K +G GGT + ++
Sbjct: 73 LQQI--ELDLKATQ---ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 127
Query: 445 ELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 503
+L+ A IIV TPGR+ DML + R + + + VLDEAD M GF+ Q+ I
Sbjct: 128 KLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 184
Query: 504 VRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI 552
+ + Q V+ SAT P + + ++ + PI I V + + + Q I
Sbjct: 185 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 233
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 25/217 (11%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILD 390
+ K+I A+ + + TP+Q + I I+S D+I AKTG+GKT AF++P+ +H+++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 391 QPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK-SLGLR---VVCVYGGTGISEQISEL 446
+ A+I++PTR+L +QI E KK + GL+ V + GGT ++++
Sbjct: 88 -TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 146
Query: 447 -KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI----- 500
K I++ TPGR+ID+L S + R V Y VLDEADR+ ++GF + I
Sbjct: 147 NKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 501 ------IDNVRPDRQTVMFSATFPRQMEALARRILNK 531
DN++ T++FSAT +++ LA I+NK
Sbjct: 205 EKNSKSADNIK----TLLFSATLDDKVQKLANNIMNK 237
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 25/217 (11%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILD 390
+ K+I A+ + + TP+Q + I I+S D+I AKTG+GKT AF++P+ +H+++
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 391 QPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK-SLGLR---VVCVYGGTGISEQISEL 446
+ A+I++PTR+L +QI E KK + GL+ V + GGT ++++
Sbjct: 139 -TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 197
Query: 447 -KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI----- 500
K I++ TPGR+ID+L S + R V Y VLDEADR+ ++GF + I
Sbjct: 198 NKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETISGILN 255
Query: 501 ------IDNVRPDRQTVMFSATFPRQMEALARRILNK 531
DN++ T++FSAT +++ LA I+NK
Sbjct: 256 EKNSKSADNIK----TLLFSATLDDKVQKLANNIMNK 288
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 25/217 (11%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILD 390
+ K+I A+ + + TP+Q + I I+S D+I AKTG+GKT AF++P+ +H+++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 391 QPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK-SLGLR---VVCVYGGTGISEQISEL 446
+ A+I++PTR+L +QI E KK + GL+ V + GGT ++++
Sbjct: 88 T-KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 146
Query: 447 -KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI----- 500
K I++ TPGR+ID+L S + R V Y VLDEADR+ ++GF + I
Sbjct: 147 NKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 501 ------IDNVRPDRQTVMFSATFPRQMEALARRILNK 531
DN++ T++FSAT +++ LA I+NK
Sbjct: 205 EKNSKSADNIK----TLLFSATLDDKVQKLANNIMNK 237
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 115/204 (56%), Gaps = 15/204 (7%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+++KI A+++ ++ T +Q++ IP ++ G++++ AKTGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
G +++++PTREL Q+ + + + +V VYGG QI+ + R A+I
Sbjct: 56 ------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADI 108
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512
+V TPGR++D+ + V +L +++DEAD MF+MGF + I+ + T +
Sbjct: 109 VVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGL 165
Query: 513 FSATFPRQMEALARRILNKPIEIQ 536
FSAT P ++ + + + EI+
Sbjct: 166 FSATIPEEIRKVVKDFITNYEEIE 189
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 13/222 (5%)
Query: 320 GCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVA 379
G P + + + ++L A+ +E P+ +Q + IP + G D++ AK+G GKT
Sbjct: 1 GSPGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV 60
Query: 380 FVLPLLRHILDQPPLEETDGPMAI-IMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGT 437
FVL L+ LE G +++ +M TREL QI KE ++F+K + ++V +GG
Sbjct: 61 FVLATLQQ------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGL 114
Query: 438 GISEQISELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEP 495
I + LK+ I+V TPGR +LA + NL+ + + +LDEAD+M + +
Sbjct: 115 SIKKDEEVLKKNCPHIVVGTPGR---ILALARNKSLNLKHIKHFILDEADKMLEQLDMRR 171
Query: 496 QVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
V I ++Q +MFSAT +++ + R+ + P+EI V
Sbjct: 172 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 213
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 9/207 (4%)
Query: 332 GVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQ 391
+ + +L + +EKP+ IQ +AI + G D+I A++G+GKT F + +L+ + +
Sbjct: 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL--E 93
Query: 392 PPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGA- 450
+ET A++++PTREL QI K +G GGT + ++ +L+ A
Sbjct: 94 IEFKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAP 150
Query: 451 EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQT 510
I+V TPGR+ DML + R + + + VLDEAD M GF+ Q+ I + Q
Sbjct: 151 HIVVGTPGRVFDML---NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 207
Query: 511 VMFSATFPRQMEALARRILNKPIEIQV 537
V+ SAT P + + ++ + PI I V
Sbjct: 208 VLLSATMPTDVLEVTKKFMRDPIRILV 234
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 13/206 (6%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
++L A+ +E P+ +Q + IP + G D++ AK+G GKT FVL L+ LE
Sbjct: 24 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ------LE 77
Query: 396 ETDGPMAI-IMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGA-EI 452
G +++ +M TREL QI KE ++F+K + ++V +GG I + LK+ I
Sbjct: 78 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 137
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTV 511
+V TPGR +LA + NL+ + + +LDE D+M + + V I ++Q +
Sbjct: 138 VVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 194
Query: 512 MFSATFPRQMEALARRILNKPIEIQV 537
MFSAT +++ + R+ + P+EI V
Sbjct: 195 MFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 13/206 (6%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
++L A+ +E P+ +Q + IP + G D++ AK+G GKT FVL L+ LE
Sbjct: 18 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ------LE 71
Query: 396 ETDGPMAI-IMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGA-EI 452
G +++ +M TREL QI KE ++F+K + ++V +GG I + LK+ I
Sbjct: 72 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTV 511
+V TPGR +LA + NL+ + + +LDE D+M + + V I ++Q +
Sbjct: 132 VVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 188
Query: 512 MFSATFPRQMEALARRILNKPIEIQV 537
MFSAT +++ + R+ + P+EI V
Sbjct: 189 MFSATLSKEIRPVCRKFMQDPMEIFV 214
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 13/206 (6%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
++L A+ +E P+ +Q + IP + G D++ AK+G GKT FVL L+ LE
Sbjct: 18 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ------LE 71
Query: 396 ETDGPMAI-IMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGA-EI 452
G +++ +M TREL QI KE ++F+K + ++V +GG I + LK+ I
Sbjct: 72 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTV 511
+V TPGR +LA + NL+ + + +LDE D+M + + V I ++Q +
Sbjct: 132 VVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 188
Query: 512 MFSATFPRQMEALARRILNKPIEIQV 537
MFSAT +++ + R+ + P+EI V
Sbjct: 189 MFSATLSKEIRPVCRKFMQDPMEIFV 214
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Query: 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405
+E+P+ IQ +AI I+ G D++ A++G+GKT F + L+ I P A+++
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-----TSVKAPQALML 96
Query: 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLA 465
+PTREL +QI K + ++V GGT E +E R A+I+V TPGR+ D +
Sbjct: 97 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-AEGLRDAQIVVGTPGRVFDNIQ 155
Query: 466 ANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALA 525
R ++ +LDEAD M GF+ Q+ +I + P Q V+ SAT P + +
Sbjct: 156 RRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 212
Query: 526 RRILNKPIEIQVGGRSVVCKEVEQHVI 552
+ + P+ I V + + ++Q +
Sbjct: 213 TKFMRNPVRILVKKDELTLEGIKQFYV 239
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 9/205 (4%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+ +++L + +E+P+ IQ +AI I+ G D++ A++G+GKT F + L+ I
Sbjct: 28 LDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID--- 84
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
P A++++PTREL +QI K + ++V GGT E +E R A+I
Sbjct: 85 --TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-AEGLRDAQI 141
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512
+V TPGR+ D + R ++ +LDEAD M GF+ Q+ +I + P Q V+
Sbjct: 142 VVGTPGRVFDNIQRRRFRTDKIK---MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 198
Query: 513 FSATFPRQMEALARRILNKPIEIQV 537
SAT P + + + + P+ I V
Sbjct: 199 LSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 9/205 (4%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+ + +L + +E+P+ IQ +AI I+ G D++ A++G+GKT F + L+ I
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID--- 77
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
P A++++PTREL +QI K + ++V GGT E +E R A+I
Sbjct: 78 --TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-AEGLRDAQI 134
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512
+V TPGR+ D + R ++ +LDEAD M GF+ Q+ +I + P Q V+
Sbjct: 135 VVGTPGRVFDNIQRRRFRTDKIK---MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 191
Query: 513 FSATFPRQMEALARRILNKPIEIQV 537
SAT P + + + + P+ I V
Sbjct: 192 LSATMPNDVLEVTTKFMRNPVRILV 216
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 337 ILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEE 396
I++A+K + KPT IQ + IP + G +G ++TG+GKT A++LP+ I +P E
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKI--KPERAE 72
Query: 397 TDGPMAIIMSPTRELCMQIGKEAKKFT----KSLGLRVVCVYGGTGISEQISELKRGAEI 452
A+I +PTREL QI E K T K + C+ GGT + + +L I
Sbjct: 73 VQ---AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512
++ TPGR+ D + + ++ +V+DEAD D GF V +I D Q ++
Sbjct: 130 VIGTPGRINDFIREQA---LDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLV 186
Query: 513 FSATFPRQMEALARRILNKPIEIQV 537
FSAT P +++ ++ P + V
Sbjct: 187 FSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 11/215 (5%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPL 384
+ ++ +S+ +L + +E P+ IQ +AI + G D+I A++G+G T F + +
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 385 LRHI-LDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443
L+ I LD + A++++PTREL QI +G GGT + ++
Sbjct: 74 LQQIELDLXATQ------ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEV 127
Query: 444 SELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID 502
L+ A IIV TPGR+ DML + R + + VLDEAD M GF Q+ I
Sbjct: 128 QXLQMEAPHIIVGTPGRVFDML---NRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQ 184
Query: 503 NVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
+ + Q V+ SAT P + + + PI I V
Sbjct: 185 XLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405
+E+P+ IQ +AI I+ G D++ A++G+GKT F + L+ I P A+ +
Sbjct: 41 FEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-----TSVKAPQALXL 95
Query: 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLA 465
+PTREL +QI K ++V GGT E L R A+I+V TPGR+ D +
Sbjct: 96 APTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQ 154
Query: 466 ANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALA 525
R ++ +LDEAD GF+ Q+ +I + P Q V+ SAT P + +
Sbjct: 155 RRRFRTDKIKX---FILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVT 211
Query: 526 RRILNKPIEIQVGGRSVVCKEVEQHVI 552
+ P+ I V + + ++Q +
Sbjct: 212 TKFXRNPVRILVKKDELTLEGIKQFYV 238
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 118/210 (56%), Gaps = 21/210 (10%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLP 383
K++ + G++ ++L + ++KP+ IQ +A+P ++ R++I +++G+GKT AF L
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 384 LLRHILDQPPLEETDGPMAIIMSPTRELC---MQIGKEAKKFTKSLGLRVVCVYGGTGIS 440
+L + P E P AI ++P+REL +++ +E KFTK +V +
Sbjct: 82 MLTRV--NP---EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 134
Query: 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMR 499
+QI+ A++IV TPG ++D++ ++ L+++ VLDEAD M D G Q +R
Sbjct: 135 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 186
Query: 500 IIDNVRPDRQTVMFSATFPRQMEALARRIL 529
+ + D Q V+FSATF + A++I+
Sbjct: 187 VKRFLPKDTQLVLFSATFADAVRQYAKKIV 216
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 21/230 (9%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLP 383
K++ + G++ ++L + ++KP+ IQ +A+P ++ R++I +++G+GKT AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 384 LLRHILDQPPLEETDGPMAIIMSPTRELC---MQIGKEAKKFTKSLGLRVVCVYGGTGIS 440
+L + P E P AI ++P+REL +++ +E KFTK +V +
Sbjct: 65 MLTRV--NP---EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 117
Query: 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMR 499
+QI+ A++IV TPG ++D++ ++ L+++ VLDEAD M D G Q +R
Sbjct: 118 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 500 IIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQ 549
+ + D Q V+FSATF + A++I+ +++ V ++Q
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQ 219
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 118/210 (56%), Gaps = 21/210 (10%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLP 383
K++ + G++ ++L + ++KP+ IQ +A+P ++ R++I +++G+GKT AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 384 LLRHILDQPPLEETDGPMAIIMSPTRELC---MQIGKEAKKFTKSLGLRVVCVYGGTGIS 440
+L + P E P AI ++P+REL +++ +E KFTK +V +
Sbjct: 65 MLTRV--NP---EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 117
Query: 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMR 499
+QI+ A++IV TPG ++D++ ++ L+++ VLDEAD M D G Q +R
Sbjct: 118 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 500 IIDNVRPDRQTVMFSATFPRQMEALARRIL 529
+ + D Q V+FSATF + A++I+
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYAKKIV 199
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 23/205 (11%)
Query: 352 IQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409
IQ +A+P ++S R++IG +++G+GKT AF L +L + P P AI ++P+R
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSR 199
Query: 410 ELCMQIG---KEAKKFTKSLGLRVVCVYGGTGISEQISE-LKRGAEIIVCTPGRMIDMLA 465
EL QI E K+T+ V GI + + + K A+I++ TPG ++D++
Sbjct: 200 ELARQIMDVVTEMGKYTE--------VKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMK 251
Query: 466 ANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEAL 524
R + R + VLDEAD M D G Q MRI + + Q V+FSATF ++E
Sbjct: 252 R---RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKY 308
Query: 525 ARRILNKPIEIQVGGRSVVCKEVEQ 549
A R EI++ + + ++Q
Sbjct: 309 AERFAPNANEIRLKTEELSVEGIKQ 333
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+S+ +L+ L+ +E+P+P+Q +AIP G DLI AK+G+GKT F LD
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS----TIALDSL 86
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKF-TKSLGLRVVCVYGGTGISEQISELKRGAE 451
LE + +I++PTRE+ +QI K GL GGT +S+ + LK+
Sbjct: 87 VLENLSTQI-LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CH 144
Query: 452 IIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVRPDRQT 510
I V +PGR+ ++ + N + +LDEAD++ + G F+ Q+ I ++ +Q
Sbjct: 145 IAVGSPGRIKQLIELD---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM 201
Query: 511 VMFSATFPRQMEALARRILNKPIEIQV 537
+ SAT+P + + + P +++
Sbjct: 202 LAVSATYPEFLANALTKYMRDPTFVRL 228
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 151 AMLSQV--EPA---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 206 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV 553
RI + + Q ++FSATF + A++++ P I++ ++Q+ ++
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 313
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 121 AMLSQV--EPA---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 175
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 176 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 228
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV 553
RI + + Q ++FSATF + A++++ P I++ ++Q+ ++
Sbjct: 229 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 283
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 100 AMLSQV--EPA---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 154
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 155 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 207
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV 553
RI + + Q ++FSATF + A++++ P I++ ++Q+ ++
Sbjct: 208 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 262
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 84 AMLSQV--EPA---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 138
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 139 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV 553
RI + + Q ++FSATF + A++++ P I++ ++Q+ ++
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 246
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 151 AMLSQV--EP---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 206 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
RI + + Q ++FSATF + A++++ P I++
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVL 382
+K++ + + ++L + + +P+ IQ A+P +++ ++LI +++G+GKT AFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 383 PLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK---EAKKFTKSLGLRVVCVYGGTGI 439
+L + +P P + +SPT EL +Q GK + KF L L
Sbjct: 84 AMLSQV--EP---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 138
Query: 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVM 498
++ISE +I++ TPG ++D + + + +++ VLDEAD M G + Q +
Sbjct: 139 GQKISE-----QIVIGTPGTVLDW--CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
RI + + Q ++FSATF + A++++ P I++
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET---DGPMAIIMSPTRELCMQI 415
A+ + +L+ A TG+GKT ++ +LR I ++ T D I ++P R L ++
Sbjct: 91 ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150
Query: 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475
F K L + V TG + E +IIVCTP + D++ G T +
Sbjct: 151 ---VGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQ 206
Query: 476 RVTYIVLDEADRMFDMG---FEPQVMRIIDNV---RPDRQTVMFSATFP 518
V I+LDE + D E V R I N+ + D + + SAT P
Sbjct: 207 LVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP 255
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 338 LDALKKQNYEKPTPIQAQAIPAIMSGRDLIGI-AKTGSGKTVAFVLPLLRHILDQPPLEE 396
++L + + PIQ Q + + D + + A TGSGKT+ +LR + L+
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML-----LQS 970
Query: 397 TDGPMAIIMSPTRELCMQIGKE-AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
++G + ++P L Q+ + +KF L +VV + G T S + L +G II+
Sbjct: 971 SEG-RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET--STDLKLLGKG-NIIIS 1026
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485
TP + D+L+ + N++ + V+DE
Sbjct: 1027 TPEKW-DILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET---DGPMAIIMSPTRELCMQI 415
A+ + +L+ A TG+GKT ++ +LR I ++ T D I ++P R L ++
Sbjct: 91 ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150
Query: 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475
F K L + V TG + E +IIVCTP + D++ G T +
Sbjct: 151 ---VGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQ 206
Query: 476 RVTYIVLDEADRMFDMG---FEPQVMRIIDNV---RPDRQTVMFSATFP 518
V I+LDE + D E V R I N+ + D + + SAT P
Sbjct: 207 LVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP 255
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 338 LDALKKQNYEKPTPIQAQAIPAIMSGRDLIGI-AKTGSGKTVAFVLPLLRHILDQPPLEE 396
++L + + PIQ Q + + D + + A TGSGKT+ +LR + L+
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML-----LQS 970
Query: 397 TDGPMAIIMSPTRELCMQIGKE-AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
++G + ++P L Q+ + +KF L +VV + G T S + L +G II+
Sbjct: 971 SEG-RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET--STDLKLLGKG-NIIIS 1026
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485
TP + D+L+ + N++ + V+DE
Sbjct: 1027 TPEKW-DILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392
+S + LK++ E+ P QA+A+ + SG++L+ T +GKT+ + ++R
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR------ 63
Query: 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEI 452
E G ++ + P R L + + KK+ K +GLR+ TG E E +I
Sbjct: 64 --EAIKGGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGI---STGDYESRDEHLGDCDI 117
Query: 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484
IV T + D L N R + ++ V+ +V+DE
Sbjct: 118 IVTTSEKA-DSLIRN--RASWIKAVSCLVVDE 146
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 348 KPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406
KP Q + A+PA M G++ I A TG GKT +L H+ P ++
Sbjct: 13 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 71
Query: 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAA 466
P E Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct: 72 PVYE---QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 126
Query: 467 NSGRVTNLRRVTYIVLDEA 485
G + +L T ++ DE
Sbjct: 127 KKGTIPSLSIFTLMIFDEC 145
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 348 KPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406
KP Q + A+PA M G++ I A TG GKT +L H+ P ++
Sbjct: 4 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 62
Query: 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAA 466
P E Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct: 63 PVYE---QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 117
Query: 467 NSGRVTNLRRVTYIVLDEA 485
G + +L T ++ DE
Sbjct: 118 KKGTIPSLSIFTLMIFDEC 136
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 348 KPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406
KP Q + A+PA M G++ I A TG GKT +L H+ P ++
Sbjct: 12 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 70
Query: 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAA 466
P E Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct: 71 PVYE---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 125
Query: 467 NSGRVTNLRRVTYIVLDEA 485
G + +L T ++ DE
Sbjct: 126 KKGTIPSLSIFTLMIFDEC 144
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 348 KPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406
KP Q + A+PA G++ I A TG GKT +L H+ P ++
Sbjct: 4 KPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQI 62
Query: 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAA 466
P E Q ++ + LG + + G T S + + +II+ TP +++ L
Sbjct: 63 PVYE---QQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNL-- 117
Query: 467 NSGRVTNLRRVTYIVLDEA 485
N+G + +L T + DE
Sbjct: 118 NNGAIPSLSVFTLXIFDEC 136
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 31/214 (14%)
Query: 328 WAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRH 387
W+ G K IL + K EK P+Q + I M+G+++ + TG GK++ + LP L
Sbjct: 28 WS--GKVKDILQNVFK--LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC- 82
Query: 388 ILDQPPLEETDG------PMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441
+DG P+ +M + Q+G A S V +++
Sbjct: 83 ---------SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNK 133
Query: 442 QISELKRGAEIIVCTPGRMI--DMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEP-- 495
SELK +I TP ++ M + + RR T I +DE G F P
Sbjct: 134 N-SELK----LIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY 188
Query: 496 QVMRIIDNVRPDRQTVMFSATFPRQMEALARRIL 529
+ + I+ P+ + +AT + A++IL
Sbjct: 189 KALGILKRQFPNASLIGLTATATNHVLTDAQKIL 222
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 337 ILDALKKQNYEKPTPIQAQAIP-AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
+++ +KK+ +K P Q +A+ ++ G L+ + TGSGKT+ + ++ +L
Sbjct: 19 VIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL------ 72
Query: 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVC 455
+G AI ++P R L + K + + +G +V G + + +II+
Sbjct: 73 -KNGGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIIT 127
Query: 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM-FS 514
T ++ D L + R L V Y VLDE + D P V + +R R+ ++ S
Sbjct: 128 TYEKL-DSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESV--TIRAKRRNLLALS 182
Query: 515 AT 516
AT
Sbjct: 183 AT 184
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 30/176 (17%)
Query: 351 PIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410
P Q AI I G ++ A T +GKTV + + + ++ + I SP +
Sbjct: 187 PFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRV--------IYTSPIKA 238
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGR 470
L Q +E ++ +G G+ + A +V T + ML S
Sbjct: 239 LSNQKYRE-----------LLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS-- 285
Query: 471 VTNLRRVTYIVLDEADRMFD----MGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 522
+R V +++ DE M D + +E ++ + D VR V SAT P ME
Sbjct: 286 -EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR----YVFLSATIPNAME 336
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 30/176 (17%)
Query: 351 PIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410
P Q AI I G ++ A T +GKTV + + + ++ + I SP +
Sbjct: 89 PFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRV--------IYTSPIKA 140
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGR 470
L Q +E ++ +G G+ + A +V T + ML S
Sbjct: 141 LSNQKYRE-----------LLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS-- 187
Query: 471 VTNLRRVTYIVLDEADRMFD----MGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 522
+R V +++ DE M D + +E ++ + D VR V SAT P ME
Sbjct: 188 -EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR----YVFLSATIPNAME 238
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLL 385
Y++ P Q + I ++SGRD + + TG GK++ + +P L
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLL 385
Y++ P Q + I ++SGRD + + TG GK++ + +P L
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 356 AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415
A PAI +G++ + A TGSGKT +L H + P + P E Q
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE---QQ 312
Query: 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475
K + G V + G + + ++ ++IIV TP +++ + G +T+L
Sbjct: 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN--SFEDGTLTSLS 370
Query: 476 RVTYIVLDEA 485
T ++ DE
Sbjct: 371 IFTLMIFDEC 380
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 356 AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415
A PAI +G++ + A TGSGKT +L H + P + P E Q
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE---QQ 312
Query: 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475
K + G V + G + + ++ ++IIV TP +++ + G +T+L
Sbjct: 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN--SFEDGTLTSLS 370
Query: 476 RVTYIVLDEA 485
T ++ DE
Sbjct: 371 IFTLMIFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 356 AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415
A PAI +G++ + A TGSGKT +L H + P + P E Q
Sbjct: 16 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE---QQ 71
Query: 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475
K + G V + G + + ++ ++IIV TP +++ + G +T+L
Sbjct: 72 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN--SFEDGTLTSLS 129
Query: 476 RVTYIVLDEA 485
T ++ DE
Sbjct: 130 IFTLMIFDEC 139
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 351 PIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410
P Q + + G+++I TGSGKT V H LD+ G + ++++
Sbjct: 36 PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH-LDKKKKASEPGKVIVLVNKVLL 94
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMID-MLAANSG 469
+ KE + F K RV+ + G T + E+ + +II+ T + + +L +G
Sbjct: 95 VEQLFRKEFQPFLKKW-YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 153
Query: 470 R--VTNLRRVTYIVLDEADRMFDMGFEPQVMR 499
L + I++DE +MR
Sbjct: 154 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Query: 351 PIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410
P Q + + G+++I TG GKT V H LD+ G + ++++
Sbjct: 10 PYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDH-LDKKKKASEPGKVIVLVNKVLL 68
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMID-MLAANSG 469
+ KE + F K RV+ + G T + E+ + +II+ T + + +L +G
Sbjct: 69 VEQLFRKEFQPFLKKW-YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 127
Query: 470 RV--TNLRRVTYIVLDEADRMFDMGFEPQVMR 499
L + I++DE +MR
Sbjct: 128 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,655,234
Number of Sequences: 62578
Number of extensions: 453966
Number of successful extensions: 1151
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 72
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)