Query psy12410
Match_columns 615
No_of_seqs 535 out of 3907
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:32:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0334|consensus 100.0 1.5E-71 3.2E-76 600.5 32.3 493 104-614 142-654 (997)
2 KOG0339|consensus 100.0 3.4E-70 7.4E-75 542.6 27.6 346 266-615 164-510 (731)
3 KOG0331|consensus 100.0 2.5E-58 5.4E-63 475.9 25.3 332 280-615 16-383 (519)
4 KOG0336|consensus 100.0 3.9E-56 8.5E-61 431.9 22.8 331 280-614 167-506 (629)
5 PTZ00110 helicase; Provisional 100.0 2.2E-54 4.8E-59 470.9 38.2 341 271-615 75-419 (545)
6 KOG0333|consensus 100.0 6.5E-54 1.4E-58 428.9 26.4 317 293-614 213-558 (673)
7 KOG0341|consensus 100.0 9.7E-55 2.1E-59 419.5 14.0 330 279-614 124-462 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-49 3.3E-54 431.8 39.5 339 272-615 66-410 (518)
9 KOG0330|consensus 100.0 2.3E-51 5E-56 397.5 21.9 281 325-613 60-340 (476)
10 COG0513 SrmB Superfamily II DN 100.0 8.3E-49 1.8E-53 423.1 34.0 283 326-615 29-315 (513)
11 KOG0338|consensus 100.0 6.2E-48 1.4E-52 384.5 21.2 283 326-613 181-466 (691)
12 KOG0335|consensus 100.0 8E-47 1.7E-51 383.7 21.8 298 314-614 62-378 (482)
13 KOG0328|consensus 100.0 9.1E-47 2E-51 350.6 20.1 287 320-615 21-308 (400)
14 KOG0343|consensus 100.0 7.6E-46 1.6E-50 372.8 23.0 304 300-614 49-356 (758)
15 KOG0342|consensus 100.0 1.4E-45 3E-50 367.9 23.9 287 326-615 82-372 (543)
16 PRK04537 ATP-dependent RNA hel 100.0 1.9E-44 4.2E-49 394.1 34.4 288 325-615 8-299 (572)
17 PRK04837 ATP-dependent RNA hel 100.0 2.9E-44 6.4E-49 383.4 34.9 286 325-614 7-296 (423)
18 PRK10590 ATP-dependent RNA hel 100.0 2.5E-44 5.5E-49 386.4 34.3 284 327-614 2-286 (456)
19 PRK11634 ATP-dependent RNA hel 100.0 2.7E-44 5.9E-49 394.9 34.0 282 325-615 5-287 (629)
20 KOG0345|consensus 100.0 1.8E-44 3.9E-49 357.4 28.0 287 326-614 4-298 (567)
21 KOG0326|consensus 100.0 1E-46 2.2E-51 355.8 11.5 279 327-615 86-364 (459)
22 PRK11776 ATP-dependent RNA hel 100.0 4.6E-44 1E-48 386.0 33.7 280 326-615 4-284 (460)
23 KOG0346|consensus 100.0 3.5E-45 7.7E-50 359.2 21.6 288 326-615 19-310 (569)
24 KOG0340|consensus 100.0 1.7E-44 3.8E-49 345.8 20.5 285 324-613 5-294 (442)
25 PRK11192 ATP-dependent RNA hel 100.0 1.6E-42 3.5E-47 371.7 34.9 283 327-614 2-286 (434)
26 KOG0348|consensus 100.0 1.7E-42 3.8E-47 347.6 20.5 292 322-615 132-489 (708)
27 PRK01297 ATP-dependent RNA hel 100.0 8.3E-41 1.8E-45 361.6 34.3 287 324-614 85-376 (475)
28 KOG0347|consensus 100.0 1E-42 2.2E-47 350.2 11.2 289 322-612 177-502 (731)
29 PTZ00424 helicase 45; Provisio 100.0 1.3E-39 2.8E-44 346.7 33.9 281 325-614 27-308 (401)
30 KOG0337|consensus 100.0 5.9E-41 1.3E-45 328.1 18.2 282 325-613 20-301 (529)
31 KOG0327|consensus 100.0 3.2E-39 7E-44 314.5 17.6 279 325-614 25-304 (397)
32 KOG4284|consensus 100.0 4.3E-39 9.3E-44 328.9 17.5 287 318-614 17-313 (980)
33 KOG0332|consensus 100.0 1.9E-37 4.2E-42 299.1 18.0 284 321-615 85-372 (477)
34 TIGR03817 DECH_helic helicase/ 100.0 2.2E-35 4.8E-40 330.8 30.2 270 332-615 20-321 (742)
35 KOG0344|consensus 100.0 2.9E-35 6.3E-40 301.1 17.1 309 303-614 110-429 (593)
36 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.2E-33 7E-38 307.1 28.8 258 344-613 12-310 (844)
37 PLN03137 ATP-dependent DNA hel 100.0 1.2E-32 2.7E-37 306.4 28.7 270 327-615 436-722 (1195)
38 PRK02362 ski2-like helicase; P 100.0 6.2E-33 1.3E-37 314.5 25.1 269 327-615 2-321 (737)
39 PRK00254 ski2-like helicase; P 100.0 2.6E-32 5.6E-37 308.6 26.9 269 327-615 2-313 (720)
40 KOG0329|consensus 100.0 1.6E-33 3.5E-38 258.7 13.5 253 325-586 41-296 (387)
41 PRK13767 ATP-dependent helicas 100.0 1.3E-31 2.9E-36 306.3 28.8 279 333-615 18-332 (876)
42 PRK09401 reverse gyrase; Revie 100.0 2.3E-31 5.1E-36 307.8 30.6 248 339-607 71-365 (1176)
43 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-31 7.2E-36 285.7 28.0 250 343-615 6-268 (470)
44 cd00268 DEADc DEAD-box helicas 100.0 3.7E-31 8E-36 254.4 25.3 202 328-535 1-202 (203)
45 KOG0350|consensus 100.0 6.4E-32 1.4E-36 270.0 17.5 273 334-613 145-473 (620)
46 PRK01172 ski2-like helicase; P 100.0 1.1E-30 2.5E-35 294.0 24.9 267 327-615 2-303 (674)
47 TIGR00580 mfd transcription-re 100.0 1E-29 2.2E-34 287.7 30.5 256 333-615 436-704 (926)
48 TIGR01054 rgy reverse gyrase. 100.0 9.5E-30 2.1E-34 294.9 29.6 253 336-609 66-365 (1171)
49 COG1201 Lhr Lhr-like helicases 100.0 5.7E-30 1.2E-34 280.0 25.9 272 333-614 8-295 (814)
50 PRK11057 ATP-dependent DNA hel 100.0 1.5E-29 3.3E-34 279.9 28.8 258 334-615 10-278 (607)
51 PRK10689 transcription-repair 100.0 3.4E-29 7.4E-34 289.3 30.9 254 335-615 587-853 (1147)
52 PRK14701 reverse gyrase; Provi 100.0 3.7E-29 8E-34 295.3 31.1 252 336-606 67-366 (1638)
53 TIGR01389 recQ ATP-dependent D 100.0 2E-29 4.3E-34 279.8 26.9 248 344-615 9-266 (591)
54 COG1202 Superfamily II helicas 100.0 8.2E-29 1.8E-33 251.3 21.7 272 327-615 195-482 (830)
55 PRK10917 ATP-dependent DNA hel 100.0 4.1E-28 8.8E-33 271.3 29.6 255 335-615 248-523 (681)
56 TIGR00643 recG ATP-dependent D 100.0 1.4E-27 3.1E-32 265.3 29.0 253 337-615 225-500 (630)
57 PRK09751 putative ATP-dependen 100.0 3.4E-27 7.4E-32 274.0 25.1 243 368-615 1-319 (1490)
58 PHA02653 RNA helicase NPH-II; 100.0 9.2E-27 2E-31 255.2 25.3 244 350-612 166-436 (675)
59 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.7E-26 5.8E-31 257.4 27.6 237 352-614 6-253 (819)
60 PRK11664 ATP-dependent RNA hel 99.9 3.3E-26 7.1E-31 257.3 26.4 236 353-614 10-256 (812)
61 TIGR03158 cas3_cyano CRISPR-as 99.9 9.5E-26 2.1E-30 234.0 27.0 251 352-614 1-315 (357)
62 PHA02558 uvsW UvsW helicase; P 99.9 1.8E-26 3.9E-31 250.2 21.8 244 346-614 112-385 (501)
63 TIGR01587 cas3_core CRISPR-ass 99.9 1.7E-26 3.6E-31 242.0 18.9 239 365-614 1-265 (358)
64 COG1205 Distinct helicase fami 99.9 1.5E-25 3.3E-30 252.3 27.5 273 334-614 56-355 (851)
65 PF00270 DEAD: DEAD/DEAH box h 99.9 5.9E-26 1.3E-30 211.5 19.0 165 350-523 1-168 (169)
66 PRK12898 secA preprotein trans 99.9 2.9E-25 6.2E-30 239.6 24.8 254 345-613 101-513 (656)
67 KOG0349|consensus 99.9 3.3E-26 7.2E-31 224.9 12.3 211 400-613 287-548 (725)
68 COG1204 Superfamily II helicas 99.9 2.8E-25 6E-30 246.7 20.8 248 332-594 15-274 (766)
69 COG0514 RecQ Superfamily II DN 99.9 4.5E-25 9.7E-30 233.5 20.8 254 339-615 7-272 (590)
70 KOG0952|consensus 99.9 1.1E-24 2.4E-29 235.2 19.3 258 344-606 106-386 (1230)
71 TIGR03714 secA2 accessory Sec 99.9 2.1E-23 4.5E-28 227.7 24.5 255 349-614 69-465 (762)
72 PRK09200 preprotein translocas 99.9 5.7E-23 1.2E-27 226.5 24.6 254 345-613 76-468 (790)
73 PRK13766 Hef nuclease; Provisi 99.9 3.4E-22 7.5E-27 229.5 27.9 162 345-518 12-173 (773)
74 COG1200 RecG RecG-like helicas 99.9 2.1E-22 4.6E-27 212.5 23.6 258 333-615 247-525 (677)
75 PRK11131 ATP-dependent RNA hel 99.9 1.5E-22 3.3E-27 231.5 23.3 238 352-615 78-331 (1294)
76 TIGR00963 secA preprotein tran 99.9 3.3E-22 7.2E-27 217.0 23.5 132 345-489 54-189 (745)
77 KOG0351|consensus 99.9 1.1E-22 2.3E-27 227.7 18.0 260 337-615 252-527 (941)
78 PRK12899 secA preprotein trans 99.9 1.6E-21 3.6E-26 213.8 23.9 183 294-489 32-228 (970)
79 KOG0352|consensus 99.9 2.8E-22 6.1E-27 197.3 13.6 258 337-615 7-297 (641)
80 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.8E-21 6E-26 222.1 22.2 239 354-615 73-324 (1283)
81 KOG0353|consensus 99.9 3.2E-21 6.9E-26 187.1 19.0 268 330-614 75-358 (695)
82 PRK09694 helicase Cas3; Provis 99.9 9.4E-21 2E-25 212.8 25.4 259 346-613 284-603 (878)
83 PRK13104 secA preprotein trans 99.9 5.2E-21 1.1E-25 210.5 21.1 128 348-489 82-215 (896)
84 COG1111 MPH1 ERCC4-like helica 99.9 4.8E-20 1E-24 187.0 24.6 164 346-521 13-176 (542)
85 smart00487 DEXDc DEAD-like hel 99.9 4.9E-20 1.1E-24 175.7 21.9 187 344-539 4-192 (201)
86 KOG0951|consensus 99.9 1.7E-20 3.7E-25 205.4 18.4 264 345-614 306-624 (1674)
87 TIGR00603 rad25 DNA repair hel 99.8 5.2E-20 1.1E-24 201.3 21.9 242 347-615 254-533 (732)
88 PRK12904 preprotein translocas 99.8 1.3E-19 2.9E-24 199.3 24.3 249 348-613 81-468 (830)
89 PRK05580 primosome assembly pr 99.8 5.4E-19 1.2E-23 197.3 23.4 231 347-600 143-393 (679)
90 COG1061 SSL2 DNA or RNA helica 99.8 2.8E-19 6.1E-24 190.3 19.2 240 346-615 34-324 (442)
91 KOG0354|consensus 99.8 3.4E-19 7.4E-24 191.1 16.2 169 346-525 60-229 (746)
92 COG1197 Mfd Transcription-repa 99.8 4.5E-18 9.7E-23 189.6 25.1 257 332-614 578-846 (1139)
93 COG4581 Superfamily II RNA hel 99.8 1.7E-18 3.7E-23 192.9 21.5 173 347-538 118-293 (1041)
94 KOG2340|consensus 99.8 4.1E-19 8.9E-24 179.6 14.8 259 345-604 213-583 (698)
95 KOG0922|consensus 99.8 1.1E-18 2.5E-23 182.6 18.3 246 351-615 54-308 (674)
96 COG1643 HrpA HrpA-like helicas 99.8 5.7E-18 1.2E-22 187.7 18.9 242 352-615 54-305 (845)
97 PRK13107 preprotein translocas 99.8 4.3E-18 9.4E-23 187.0 17.5 130 348-489 82-215 (908)
98 TIGR00595 priA primosomal prot 99.8 3.9E-17 8.4E-22 176.1 23.3 222 367-612 1-299 (505)
99 PRK11448 hsdR type I restricti 99.8 2.1E-17 4.5E-22 191.3 21.9 163 347-519 412-596 (1123)
100 KOG0948|consensus 99.8 6.8E-18 1.5E-22 176.9 15.9 228 347-599 128-409 (1041)
101 KOG0923|consensus 99.8 1E-17 2.2E-22 173.6 15.3 244 348-612 265-521 (902)
102 KOG0947|consensus 99.8 2.8E-17 6.1E-22 176.4 19.1 160 347-529 296-455 (1248)
103 COG1110 Reverse gyrase [DNA re 99.8 1.6E-16 3.5E-21 172.7 24.5 249 337-607 71-372 (1187)
104 PRK12906 secA preprotein trans 99.7 2.8E-16 6.1E-21 172.6 21.7 130 348-489 80-213 (796)
105 KOG0924|consensus 99.7 6.2E-17 1.3E-21 168.1 14.9 241 348-610 356-610 (1042)
106 KOG0950|consensus 99.7 6.8E-17 1.5E-21 174.8 14.7 188 333-534 207-402 (1008)
107 COG1203 CRISPR-associated heli 99.7 1.8E-16 4E-21 178.8 18.3 263 348-614 195-481 (733)
108 cd00046 DEXDc DEAD-like helica 99.7 5.7E-16 1.2E-20 138.8 16.9 144 364-517 1-144 (144)
109 COG4098 comFA Superfamily II D 99.7 9.7E-15 2.1E-19 141.2 23.3 230 348-607 97-341 (441)
110 PRK04914 ATP-dependent helicas 99.7 3.7E-15 7.9E-20 169.1 23.4 160 347-518 151-316 (956)
111 KOG0926|consensus 99.7 8.5E-16 1.8E-20 162.3 16.4 225 353-596 261-504 (1172)
112 KOG0925|consensus 99.7 1.6E-15 3.6E-20 152.3 15.3 258 325-605 24-294 (699)
113 PF04851 ResIII: Type III rest 99.6 2.6E-15 5.5E-20 141.6 15.0 155 348-518 3-183 (184)
114 KOG0920|consensus 99.6 1.8E-14 3.9E-19 159.4 21.0 248 349-614 174-461 (924)
115 PF06862 DUF1253: Protein of u 99.6 2.8E-14 6.1E-19 147.6 20.9 215 396-611 34-338 (442)
116 COG4096 HsdR Type I site-speci 99.6 9E-15 2E-19 157.1 17.4 244 347-611 164-469 (875)
117 TIGR00348 hsdR type I site-spe 99.6 3.1E-14 6.8E-19 159.1 21.6 156 348-519 238-404 (667)
118 PLN03142 Probable chromatin-re 99.6 3.4E-14 7.3E-19 161.8 21.9 251 348-614 169-528 (1033)
119 PRK12326 preprotein translocas 99.6 1.8E-13 3.8E-18 147.6 23.2 130 348-489 78-211 (764)
120 KOG0385|consensus 99.5 6.6E-13 1.4E-17 140.6 19.4 251 348-614 167-528 (971)
121 PRK13103 secA preprotein trans 99.5 4.6E-13 1E-17 147.9 18.7 130 348-489 82-215 (913)
122 COG1198 PriA Primosomal protei 99.4 3.7E-12 7.9E-17 139.8 17.5 222 347-592 197-439 (730)
123 CHL00122 secA preprotein trans 99.4 1.2E-11 2.6E-16 136.3 19.7 131 345-489 74-209 (870)
124 TIGR01407 dinG_rel DnaQ family 99.4 6.4E-12 1.4E-16 145.0 17.6 94 334-436 232-332 (850)
125 PRK12902 secA preprotein trans 99.4 4.4E-11 9.5E-16 131.6 20.5 129 348-489 85-218 (939)
126 KOG1123|consensus 99.3 1.4E-12 3E-17 131.8 6.8 242 347-614 301-579 (776)
127 KOG0384|consensus 99.3 2E-12 4.2E-17 143.4 8.6 154 347-517 369-535 (1373)
128 PRK12903 secA preprotein trans 99.3 1.5E-10 3.4E-15 126.9 21.7 132 345-489 76-211 (925)
129 TIGR03117 cas_csf4 CRISPR-asso 99.3 3.7E-11 8.1E-16 131.0 15.7 72 358-435 11-85 (636)
130 PRK07246 bifunctional ATP-depe 99.3 3.9E-11 8.5E-16 136.7 16.1 83 345-437 243-330 (820)
131 KOG0949|consensus 99.3 1.6E-11 3.5E-16 133.1 11.2 163 348-520 511-674 (1330)
132 KOG0387|consensus 99.3 9.8E-11 2.1E-15 125.0 15.5 131 348-491 205-352 (923)
133 KOG0951|consensus 99.2 4.2E-11 9.1E-16 132.8 12.5 226 346-595 1141-1381(1674)
134 PF07652 Flavi_DEAD: Flaviviru 99.2 2.3E-11 5E-16 105.6 8.2 135 363-521 4-140 (148)
135 PF00176 SNF2_N: SNF2 family N 99.2 4.3E-11 9.3E-16 122.1 9.6 160 352-518 1-173 (299)
136 smart00488 DEXDc2 DEAD-like he 99.2 3.1E-10 6.7E-15 114.2 14.3 73 348-422 8-84 (289)
137 smart00489 DEXDc3 DEAD-like he 99.2 3.1E-10 6.7E-15 114.2 14.3 73 348-422 8-84 (289)
138 KOG0390|consensus 99.1 1.2E-08 2.7E-13 111.8 23.9 160 348-517 238-414 (776)
139 PRK12900 secA preprotein trans 99.1 2.4E-09 5.1E-14 119.4 17.5 128 349-489 139-271 (1025)
140 COG0556 UvrB Helicase subunit 99.1 3.5E-09 7.6E-14 108.9 15.9 101 508-615 387-488 (663)
141 COG4889 Predicted helicase [Ge 99.1 1.6E-10 3.4E-15 124.0 6.4 149 326-489 140-317 (1518)
142 KOG1000|consensus 99.1 1.6E-08 3.5E-13 102.9 20.2 248 346-613 196-532 (689)
143 PF07517 SecA_DEAD: SecA DEAD- 99.1 5.7E-09 1.2E-13 102.2 16.2 131 347-489 76-210 (266)
144 PRK14873 primosome assembly pr 99.0 4.3E-09 9.4E-14 116.5 16.7 200 371-594 168-389 (665)
145 PRK08074 bifunctional ATP-depe 99.0 3.3E-09 7.1E-14 123.3 16.5 82 347-435 256-344 (928)
146 KOG0391|consensus 99.0 1.9E-09 4.2E-14 118.6 10.4 154 348-517 615-775 (1958)
147 KOG0389|consensus 98.9 1.6E-09 3.4E-14 115.8 8.2 155 348-518 399-563 (941)
148 KOG1002|consensus 98.9 1.9E-08 4.1E-13 102.2 13.9 154 347-518 183-355 (791)
149 TIGR00631 uvrb excinuclease AB 98.9 1.3E-07 2.9E-12 105.1 21.2 58 557-614 425-483 (655)
150 PRK11747 dinG ATP-dependent DN 98.8 7.4E-08 1.6E-12 108.6 15.4 63 347-416 24-95 (697)
151 PRK15483 type III restriction- 98.8 8.6E-08 1.9E-12 108.0 15.5 146 364-519 60-240 (986)
152 PF02399 Herpes_ori_bp: Origin 98.8 2.1E-07 4.6E-12 102.0 17.9 224 366-610 52-319 (824)
153 KOG0386|consensus 98.8 1.4E-08 3E-13 111.3 8.7 130 348-490 394-529 (1157)
154 KOG0392|consensus 98.8 8.4E-08 1.8E-12 107.1 14.0 160 348-518 975-1139(1549)
155 TIGR00604 rad3 DNA repair heli 98.7 1.1E-07 2.3E-12 108.2 13.0 74 345-423 7-84 (705)
156 COG0610 Type I site-specific r 98.7 4.2E-07 9E-12 105.4 16.7 160 364-538 274-435 (962)
157 KOG0388|consensus 98.6 6.7E-08 1.4E-12 102.1 8.0 156 348-519 567-735 (1185)
158 COG1199 DinG Rad3-related DNA 98.6 2.7E-07 5.9E-12 104.6 13.4 72 344-422 11-86 (654)
159 KOG0952|consensus 98.6 4.1E-08 8.8E-13 108.3 6.2 223 348-584 927-1164(1230)
160 PRK12901 secA preprotein trans 98.6 8E-07 1.7E-11 99.7 15.3 129 349-489 170-303 (1112)
161 TIGR02562 cas3_yersinia CRISPR 98.6 5.1E-07 1.1E-11 101.7 13.7 172 347-525 407-642 (1110)
162 PF13086 AAA_11: AAA domain; P 98.5 4.3E-07 9.4E-12 88.8 10.8 73 348-421 1-75 (236)
163 KOG4150|consensus 98.5 5.7E-07 1.2E-11 93.1 10.7 264 341-614 279-574 (1034)
164 KOG4439|consensus 98.5 5.6E-07 1.2E-11 95.5 9.6 141 348-491 325-478 (901)
165 PF02562 PhoH: PhoH-like prote 98.5 1.7E-07 3.6E-12 88.3 5.0 145 347-515 3-154 (205)
166 PRK05298 excinuclease ABC subu 98.4 1.1E-05 2.5E-10 90.4 18.6 57 558-614 430-487 (652)
167 PF13604 AAA_30: AAA domain; P 98.4 1.6E-06 3.4E-11 82.3 9.9 126 348-516 1-130 (196)
168 COG0653 SecA Preprotein transl 98.4 1.1E-05 2.3E-10 89.5 17.1 129 350-489 80-213 (822)
169 PF13872 AAA_34: P-loop contai 98.3 5.6E-06 1.2E-10 81.5 12.1 173 331-522 26-225 (303)
170 KOG0953|consensus 98.3 2.7E-06 6E-11 88.3 10.3 201 364-613 192-397 (700)
171 PRK10536 hypothetical protein; 98.3 9.8E-06 2.1E-10 78.5 13.4 142 345-514 56-210 (262)
172 KOG1802|consensus 98.3 2.8E-05 6.2E-10 82.4 17.4 85 340-435 402-486 (935)
173 KOG0921|consensus 98.2 4.4E-06 9.5E-11 91.0 9.9 152 354-518 384-536 (1282)
174 PF12340 DUF3638: Protein of u 98.2 3.5E-05 7.6E-10 73.3 13.8 154 327-490 4-186 (229)
175 TIGR00376 DNA helicase, putati 98.2 0.00023 5E-09 79.6 22.4 67 347-421 156-223 (637)
176 TIGR01447 recD exodeoxyribonuc 98.1 3E-05 6.5E-10 85.4 14.0 144 350-514 147-293 (586)
177 PRK10875 recD exonuclease V su 98.1 3.6E-05 7.7E-10 85.0 13.2 144 349-514 153-299 (615)
178 KOG1803|consensus 98.0 1.4E-05 2.9E-10 84.5 8.7 66 347-420 184-250 (649)
179 TIGR01448 recD_rel helicase, p 98.0 8.4E-05 1.8E-09 84.3 14.8 128 346-514 321-450 (720)
180 PF09848 DUF2075: Uncharacteri 98.0 2.5E-05 5.4E-10 81.5 9.7 107 366-503 4-117 (352)
181 COG3587 Restriction endonuclea 98.0 1.8E-05 3.8E-10 86.5 8.6 147 364-522 75-247 (985)
182 KOG1015|consensus 97.9 6.8E-05 1.5E-09 82.4 11.4 157 363-529 696-869 (1567)
183 PRK12723 flagellar biosynthesi 97.9 0.00031 6.6E-09 73.3 14.5 132 363-528 174-309 (388)
184 KOG1132|consensus 97.8 0.00012 2.7E-09 80.4 11.9 139 347-490 20-261 (945)
185 COG0553 HepA Superfamily II DN 97.8 0.00013 2.7E-09 86.0 12.6 160 347-517 337-510 (866)
186 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00077 1.7E-08 76.9 16.1 122 347-514 351-474 (744)
187 PRK08181 transposase; Validate 97.7 0.0012 2.6E-08 65.6 15.2 120 349-520 88-212 (269)
188 COG3421 Uncharacterized protei 97.7 5.9E-05 1.3E-09 79.3 6.2 159 368-538 2-184 (812)
189 PRK14974 cell division protein 97.7 0.00061 1.3E-08 69.7 13.3 131 364-529 141-276 (336)
190 PF13245 AAA_19: Part of AAA d 97.7 0.00021 4.5E-09 56.2 7.6 53 363-419 10-62 (76)
191 PRK13889 conjugal transfer rel 97.6 0.0007 1.5E-08 78.4 14.1 122 347-514 345-468 (988)
192 PRK04296 thymidine kinase; Pro 97.6 0.00023 5E-09 67.2 8.4 108 365-516 4-114 (190)
193 PRK11889 flhF flagellar biosyn 97.6 0.0015 3.3E-08 67.2 14.6 129 364-529 242-375 (436)
194 PRK14722 flhF flagellar biosyn 97.6 0.00048 1E-08 71.2 11.1 131 362-529 136-270 (374)
195 COG1419 FlhF Flagellar GTP-bin 97.6 0.0015 3.2E-08 67.2 14.2 134 362-531 202-338 (407)
196 KOG1805|consensus 97.6 0.00046 1E-08 76.7 11.0 136 331-489 656-809 (1100)
197 PF00448 SRP54: SRP54-type pro 97.5 0.00074 1.6E-08 63.9 11.0 130 366-528 4-136 (196)
198 PRK06526 transposase; Provisio 97.5 0.0009 1.9E-08 66.0 11.8 27 359-385 94-120 (254)
199 PRK05703 flhF flagellar biosyn 97.5 0.0062 1.3E-07 64.8 18.4 129 362-528 220-354 (424)
200 PF05970 PIF1: PIF1-like helic 97.5 0.00032 6.9E-09 73.4 8.2 60 348-415 1-66 (364)
201 PF13401 AAA_22: AAA domain; P 97.5 0.00042 9.2E-09 60.9 7.7 22 363-384 4-25 (131)
202 COG1875 NYN ribonuclease and A 97.4 0.00066 1.4E-08 68.0 9.4 145 345-514 225-385 (436)
203 PRK13826 Dtr system oriT relax 97.4 0.0029 6.3E-08 73.9 15.8 136 333-515 367-504 (1102)
204 PF00580 UvrD-helicase: UvrD/R 97.4 0.00039 8.4E-09 71.2 8.1 104 349-464 1-104 (315)
205 TIGR02760 TraI_TIGR conjugativ 97.4 0.015 3.2E-07 73.0 21.9 208 348-594 429-647 (1960)
206 PF03354 Terminase_1: Phage Te 97.3 0.00082 1.8E-08 73.1 8.7 154 351-517 1-164 (477)
207 KOG4368|consensus 97.3 0.00045 9.7E-09 72.0 6.0 8 181-188 735-742 (757)
208 cd00009 AAA The AAA+ (ATPases 97.2 0.0048 1E-07 54.8 11.9 17 363-379 19-35 (151)
209 KOG1016|consensus 97.2 0.0051 1.1E-07 66.8 13.2 153 362-529 281-482 (1387)
210 PRK12726 flagellar biosynthesi 97.2 0.0051 1.1E-07 63.2 12.7 129 362-527 205-338 (407)
211 PRK06921 hypothetical protein; 97.2 0.0075 1.6E-07 60.0 13.7 45 362-414 116-160 (266)
212 cd00079 HELICc Helicase superf 97.2 0.0016 3.4E-08 57.0 8.0 67 547-614 2-69 (131)
213 PHA02533 17 large terminase pr 97.2 0.0041 8.9E-08 67.9 12.6 149 347-517 58-210 (534)
214 PRK12727 flagellar biosynthesi 97.2 0.058 1.3E-06 58.1 20.7 130 362-529 349-482 (559)
215 PRK07952 DNA replication prote 97.1 0.0086 1.9E-07 58.6 13.2 49 474-522 160-210 (244)
216 PRK14723 flhF flagellar biosyn 97.0 0.0098 2.1E-07 66.8 14.3 129 363-528 185-317 (767)
217 PRK06835 DNA replication prote 97.0 0.013 2.8E-07 60.0 14.2 48 474-521 244-293 (329)
218 PF14617 CMS1: U3-containing 9 97.0 0.0015 3.2E-08 63.6 6.8 86 397-486 124-211 (252)
219 PRK08116 hypothetical protein; 97.0 0.024 5.1E-07 56.6 15.6 49 474-522 176-226 (268)
220 KOG1131|consensus 97.0 0.012 2.6E-07 61.4 13.3 75 345-423 13-91 (755)
221 KOG1001|consensus 97.0 0.0041 9E-08 69.2 10.8 140 364-518 153-293 (674)
222 TIGR01547 phage_term_2 phage t 97.0 0.0029 6.3E-08 67.3 9.4 144 366-529 4-152 (396)
223 PRK06731 flhF flagellar biosyn 97.0 0.015 3.3E-07 57.7 13.7 131 362-529 74-209 (270)
224 PF05127 Helicase_RecD: Helica 97.0 0.00039 8.5E-09 63.9 2.3 136 367-530 1-139 (177)
225 PHA03333 putative ATPase subun 97.0 0.021 4.5E-07 62.7 15.2 75 345-426 166-243 (752)
226 PRK00771 signal recognition pa 96.9 0.013 2.8E-07 62.3 13.6 129 364-528 96-228 (437)
227 COG1444 Predicted P-loop ATPas 96.9 0.01 2.2E-07 66.1 12.6 143 346-518 212-357 (758)
228 smart00382 AAA ATPases associa 96.9 0.004 8.7E-08 54.8 7.9 41 363-411 2-42 (148)
229 PRK08727 hypothetical protein; 96.9 0.0075 1.6E-07 58.9 10.4 47 474-520 91-139 (233)
230 PRK14087 dnaA chromosomal repl 96.9 0.012 2.6E-07 63.3 12.7 109 364-520 142-252 (450)
231 PRK05642 DNA replication initi 96.9 0.0073 1.6E-07 59.0 10.2 46 474-519 95-141 (234)
232 TIGR01425 SRP54_euk signal rec 96.8 0.018 3.8E-07 60.8 13.1 61 365-436 102-164 (429)
233 PRK12724 flagellar biosynthesi 96.8 0.023 5E-07 59.5 13.7 126 364-528 224-356 (432)
234 PRK06893 DNA replication initi 96.8 0.0048 1E-07 60.1 8.2 47 474-520 89-137 (229)
235 TIGR00064 ftsY signal recognit 96.8 0.024 5.2E-07 56.6 13.2 132 364-529 73-214 (272)
236 COG2805 PilT Tfp pilus assembl 96.7 0.0033 7.1E-08 61.6 6.5 58 314-391 94-152 (353)
237 PRK10867 signal recognition pa 96.7 0.022 4.7E-07 60.4 13.2 86 365-460 102-195 (433)
238 PRK00149 dnaA chromosomal repl 96.7 0.011 2.4E-07 63.8 11.4 46 475-520 210-257 (450)
239 PRK12377 putative replication 96.7 0.0099 2.2E-07 58.3 9.5 47 474-520 161-209 (248)
240 PRK14721 flhF flagellar biosyn 96.7 0.06 1.3E-06 56.8 15.9 132 362-529 190-324 (420)
241 PRK09183 transposase/IS protei 96.7 0.028 6E-07 55.8 12.8 25 360-384 99-123 (259)
242 cd01124 KaiC KaiC is a circadi 96.7 0.0091 2E-07 56.0 9.1 48 366-422 2-49 (187)
243 cd01120 RecA-like_NTPases RecA 96.7 0.021 4.5E-07 51.9 11.2 37 366-410 2-38 (165)
244 PRK14712 conjugal transfer nic 96.6 0.015 3.1E-07 70.4 12.3 62 348-415 835-900 (1623)
245 PRK08084 DNA replication initi 96.6 0.012 2.7E-07 57.5 10.0 43 477-519 98-142 (235)
246 PF00308 Bac_DnaA: Bacterial d 96.6 0.01 2.2E-07 57.4 8.9 48 474-521 95-144 (219)
247 PRK13709 conjugal transfer nic 96.6 0.026 5.6E-07 69.3 13.8 65 347-415 966-1032(1747)
248 TIGR00362 DnaA chromosomal rep 96.5 0.017 3.7E-07 61.5 11.1 46 476-521 199-246 (405)
249 KOG0989|consensus 96.5 0.011 2.3E-07 58.3 8.4 59 473-532 126-187 (346)
250 TIGR01075 uvrD DNA helicase II 96.5 0.0082 1.8E-07 68.8 9.1 72 347-424 3-74 (715)
251 TIGR00959 ffh signal recogniti 96.4 0.049 1.1E-06 57.8 13.6 87 365-460 101-194 (428)
252 PRK05986 cob(I)alamin adenolsy 96.4 0.012 2.5E-07 54.8 7.9 144 361-526 20-167 (191)
253 PRK10919 ATP-dependent DNA hel 96.4 0.014 3.1E-07 66.1 10.2 71 348-424 2-72 (672)
254 PF05621 TniB: Bacterial TniB 96.4 0.079 1.7E-06 52.8 13.9 52 364-419 62-116 (302)
255 PRK11054 helD DNA helicase IV; 96.4 0.013 2.9E-07 66.0 9.6 82 345-432 193-274 (684)
256 PRK06995 flhF flagellar biosyn 96.4 0.11 2.5E-06 55.7 16.0 89 363-459 256-345 (484)
257 KOG0298|consensus 96.4 0.008 1.7E-07 69.1 7.6 157 362-523 373-556 (1394)
258 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.044 9.6E-07 49.6 10.9 135 366-526 5-147 (159)
259 TIGR00708 cobA cob(I)alamin ad 96.4 0.015 3.2E-07 53.3 7.9 52 475-526 96-149 (173)
260 PRK12422 chromosomal replicati 96.3 0.033 7.1E-07 59.7 11.8 49 474-522 200-250 (445)
261 PRK14088 dnaA chromosomal repl 96.3 0.051 1.1E-06 58.3 13.0 49 476-524 194-244 (440)
262 PRK14086 dnaA chromosomal repl 96.3 0.035 7.5E-07 61.0 11.7 48 474-521 375-424 (617)
263 COG1484 DnaC DNA replication p 96.3 0.015 3.3E-07 57.4 8.2 45 362-415 104-148 (254)
264 PRK07764 DNA polymerase III su 96.3 0.013 2.7E-07 67.3 8.6 43 475-519 119-161 (824)
265 PRK08903 DnaA regulatory inact 96.3 0.024 5.1E-07 55.2 9.4 43 476-519 90-133 (227)
266 PRK05707 DNA polymerase III su 96.3 0.023 4.9E-07 58.4 9.6 41 349-390 4-48 (328)
267 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.027 5.8E-07 54.7 9.6 42 477-518 91-133 (226)
268 TIGR01074 rep ATP-dependent DN 96.2 0.025 5.3E-07 64.5 10.6 70 349-424 2-71 (664)
269 COG2109 BtuR ATP:corrinoid ade 96.2 0.038 8.3E-07 50.6 9.5 142 366-527 31-175 (198)
270 PHA03368 DNA packaging termina 96.2 0.058 1.3E-06 59.1 12.4 136 362-519 253-392 (738)
271 COG4626 Phage terminase-like p 96.2 0.037 7.9E-07 59.2 10.7 150 347-515 60-223 (546)
272 TIGR00596 rad1 DNA repair prot 96.2 0.026 5.7E-07 64.5 10.3 89 446-537 4-98 (814)
273 PTZ00112 origin recognition co 96.1 0.066 1.4E-06 60.5 12.8 39 475-514 868-907 (1164)
274 COG0593 DnaA ATPase involved i 96.1 0.031 6.8E-07 58.3 9.6 47 476-522 175-223 (408)
275 PRK06645 DNA polymerase III su 96.1 0.065 1.4E-06 58.2 12.4 18 365-382 45-62 (507)
276 PF13173 AAA_14: AAA domain 96.0 0.06 1.3E-06 47.1 10.0 39 476-517 61-99 (128)
277 cd03115 SRP The signal recogni 96.0 0.13 2.8E-06 47.6 12.8 54 475-528 81-135 (173)
278 PRK14956 DNA polymerase III su 96.0 0.027 5.9E-07 60.1 9.1 18 366-383 43-60 (484)
279 PRK14964 DNA polymerase III su 96.0 0.074 1.6E-06 57.3 12.5 44 474-519 114-157 (491)
280 PHA02544 44 clamp loader, smal 96.0 0.066 1.4E-06 54.9 11.9 39 476-514 100-138 (316)
281 TIGR02760 TraI_TIGR conjugativ 96.0 0.044 9.5E-07 69.0 12.2 63 347-415 1018-1084(1960)
282 cd01122 GP4d_helicase GP4d_hel 96.0 0.022 4.8E-07 57.0 7.9 117 361-490 28-154 (271)
283 COG1435 Tdk Thymidine kinase [ 96.0 0.021 4.5E-07 52.8 6.8 103 366-504 7-109 (201)
284 PRK07003 DNA polymerase III su 96.0 0.06 1.3E-06 60.2 11.6 40 475-516 118-157 (830)
285 PRK14949 DNA polymerase III su 95.9 0.042 9.1E-07 62.5 10.5 44 475-520 118-161 (944)
286 PRK12402 replication factor C 95.9 0.056 1.2E-06 56.0 10.9 39 475-514 124-162 (337)
287 PRK10416 signal recognition pa 95.9 0.17 3.6E-06 51.8 14.0 133 363-529 114-256 (318)
288 PF00004 AAA: ATPase family as 95.9 0.028 6E-07 49.1 7.3 15 366-380 1-15 (132)
289 COG1474 CDC6 Cdc6-related prot 95.9 0.065 1.4E-06 55.8 10.8 24 364-388 43-66 (366)
290 TIGR03499 FlhF flagellar biosy 95.9 0.041 8.9E-07 55.4 9.1 25 363-387 194-218 (282)
291 PRK05563 DNA polymerase III su 95.8 0.11 2.4E-06 57.5 13.2 20 365-384 40-59 (559)
292 TIGR03015 pepcterm_ATPase puta 95.8 0.13 2.7E-06 51.4 12.6 34 348-381 23-61 (269)
293 PRK12323 DNA polymerase III su 95.8 0.031 6.6E-07 61.5 8.5 40 474-514 122-161 (700)
294 TIGR02881 spore_V_K stage V sp 95.8 0.065 1.4E-06 53.4 10.4 19 364-382 43-61 (261)
295 PRK14959 DNA polymerase III su 95.8 0.14 3E-06 56.7 13.5 20 365-384 40-59 (624)
296 PRK14952 DNA polymerase III su 95.8 0.06 1.3E-06 59.4 10.9 44 474-519 116-159 (584)
297 COG2256 MGS1 ATPase related to 95.8 0.046 1E-06 56.0 9.1 19 364-382 49-67 (436)
298 PRK08769 DNA polymerase III su 95.8 0.11 2.4E-06 52.9 12.0 44 347-391 3-53 (319)
299 PRK11331 5-methylcytosine-spec 95.7 0.033 7.2E-07 58.8 8.1 35 347-381 178-212 (459)
300 PRK11773 uvrD DNA-dependent he 95.7 0.051 1.1E-06 62.4 10.4 72 347-424 8-79 (721)
301 PRK07994 DNA polymerase III su 95.7 0.11 2.3E-06 58.0 12.4 41 475-517 118-158 (647)
302 PF02572 CobA_CobO_BtuR: ATP:c 95.7 0.12 2.5E-06 47.5 10.5 141 366-526 6-148 (172)
303 PRK14965 DNA polymerase III su 95.7 0.064 1.4E-06 59.6 10.5 43 474-518 117-159 (576)
304 PRK08533 flagellar accessory p 95.6 0.15 3.3E-06 49.6 11.7 52 362-422 23-74 (230)
305 PRK04195 replication factor C 95.6 0.092 2E-06 57.3 11.3 18 363-380 39-56 (482)
306 PRK14958 DNA polymerase III su 95.6 0.053 1.1E-06 59.2 9.3 39 475-514 118-156 (509)
307 PF05496 RuvB_N: Holliday junc 95.5 0.073 1.6E-06 50.7 8.8 17 365-381 52-68 (233)
308 cd00984 DnaB_C DnaB helicase C 95.5 0.12 2.6E-06 50.7 10.7 47 362-415 12-61 (242)
309 PRK13894 conjugal transfer ATP 95.4 0.047 1E-06 55.8 7.8 65 339-411 125-190 (319)
310 COG4962 CpaF Flp pilus assembl 95.4 0.025 5.3E-07 57.0 5.5 61 345-414 154-215 (355)
311 PTZ00293 thymidine kinase; Pro 95.4 0.089 1.9E-06 49.9 9.0 38 363-408 4-41 (211)
312 PRK08691 DNA polymerase III su 95.4 0.11 2.4E-06 57.9 11.0 40 474-514 117-156 (709)
313 PRK08939 primosomal protein Dn 95.4 0.14 3E-06 52.1 11.0 26 363-389 156-181 (306)
314 PRK14955 DNA polymerase III su 95.4 0.22 4.7E-06 52.9 13.0 41 474-516 125-165 (397)
315 PRK13833 conjugal transfer pro 95.4 0.061 1.3E-06 54.8 8.4 64 341-412 123-187 (323)
316 COG0552 FtsY Signal recognitio 95.4 0.42 9.1E-06 48.1 13.9 128 366-528 142-280 (340)
317 PRK14963 DNA polymerase III su 95.4 0.064 1.4E-06 58.4 9.0 23 366-389 39-61 (504)
318 TIGR02640 gas_vesic_GvpN gas v 95.4 0.15 3.4E-06 50.6 11.2 27 355-381 13-39 (262)
319 KOG0733|consensus 95.4 0.28 6.1E-06 52.9 13.2 54 324-380 506-562 (802)
320 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.041 8.8E-07 57.2 7.1 49 322-389 111-159 (358)
321 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.1 2.3E-06 51.0 9.7 51 363-422 21-71 (237)
322 PRK14960 DNA polymerase III su 95.3 0.06 1.3E-06 59.4 8.5 41 475-517 117-157 (702)
323 TIGR01073 pcrA ATP-dependent D 95.3 0.082 1.8E-06 60.9 10.2 72 347-424 3-74 (726)
324 PRK11823 DNA repair protein Ra 95.3 0.11 2.4E-06 55.8 10.3 51 363-422 80-130 (446)
325 PRK13342 recombination factor 95.3 0.18 3.9E-06 53.9 11.9 17 365-381 38-54 (413)
326 KOG0742|consensus 95.3 0.046 9.9E-07 55.8 6.8 16 364-379 385-400 (630)
327 PRK09111 DNA polymerase III su 95.3 0.12 2.5E-06 57.5 10.7 40 474-514 130-169 (598)
328 PRK14961 DNA polymerase III su 95.2 0.14 3E-06 53.7 10.8 41 474-516 117-157 (363)
329 PLN03025 replication factor C 95.2 0.2 4.4E-06 51.4 11.8 40 476-517 99-138 (319)
330 PF05876 Terminase_GpA: Phage 95.2 0.045 9.7E-07 60.5 7.2 70 348-424 16-88 (557)
331 PRK09112 DNA polymerase III su 95.2 0.13 2.9E-06 53.3 10.3 40 474-514 139-178 (351)
332 PRK14962 DNA polymerase III su 95.1 0.17 3.7E-06 54.6 11.3 17 366-382 39-55 (472)
333 CHL00181 cbbX CbbX; Provisiona 95.1 0.18 3.9E-06 50.9 10.5 21 363-383 59-79 (287)
334 PF06745 KaiC: KaiC; InterPro 95.1 0.053 1.2E-06 52.7 6.6 133 363-517 19-160 (226)
335 TIGR02785 addA_Gpos recombinat 95.0 0.068 1.5E-06 64.9 8.7 69 348-423 1-69 (1232)
336 TIGR02782 TrbB_P P-type conjug 95.0 0.11 2.4E-06 52.6 8.9 65 340-412 110-175 (299)
337 PRK07414 cob(I)yrinic acid a,c 95.0 0.12 2.6E-06 47.5 8.1 132 366-525 24-166 (178)
338 PF13177 DNA_pol3_delta2: DNA 95.0 0.21 4.4E-06 45.8 9.8 42 475-517 101-142 (162)
339 PRK00411 cdc6 cell division co 94.9 0.15 3.2E-06 54.1 10.2 24 364-388 56-79 (394)
340 TIGR02525 plasmid_TraJ plasmid 94.9 0.071 1.5E-06 55.5 7.4 50 322-390 126-175 (372)
341 PRK14957 DNA polymerase III su 94.9 0.18 3.9E-06 55.2 10.7 40 474-514 117-156 (546)
342 PRK13341 recombination factor 94.9 0.22 4.8E-06 56.6 11.7 39 476-519 109-147 (725)
343 PHA02244 ATPase-like protein 94.9 0.27 5.8E-06 50.7 11.1 26 356-381 112-137 (383)
344 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.44 9.5E-06 49.6 13.0 45 475-520 126-171 (362)
345 PRK14969 DNA polymerase III su 94.8 0.12 2.5E-06 56.9 9.1 40 474-514 117-156 (527)
346 COG0470 HolB ATPase involved i 94.8 0.09 2E-06 54.0 7.9 40 474-514 107-146 (325)
347 PRK05973 replicative DNA helic 94.8 0.17 3.8E-06 49.1 9.3 65 348-422 50-114 (237)
348 PRK06871 DNA polymerase III su 94.8 0.25 5.4E-06 50.5 10.8 40 474-514 105-144 (325)
349 COG3972 Superfamily I DNA and 94.8 0.15 3.3E-06 53.4 9.1 133 346-489 160-308 (660)
350 PRK14951 DNA polymerase III su 94.7 0.17 3.7E-06 56.2 10.1 44 474-519 122-165 (618)
351 TIGR03600 phage_DnaB phage rep 94.7 0.31 6.7E-06 52.2 11.9 37 363-406 194-230 (421)
352 PRK14948 DNA polymerase III su 94.7 0.39 8.5E-06 53.7 12.9 19 364-382 39-57 (620)
353 TIGR02880 cbbX_cfxQ probable R 94.7 0.43 9.3E-06 48.1 12.1 19 363-381 58-76 (284)
354 PF04665 Pox_A32: Poxvirus A32 94.6 0.11 2.3E-06 50.5 7.3 35 365-407 15-49 (241)
355 PF01695 IstB_IS21: IstB-like 94.6 0.069 1.5E-06 49.7 5.9 46 361-415 45-90 (178)
356 PF03237 Terminase_6: Terminas 94.6 0.59 1.3E-05 48.8 13.8 146 367-532 1-154 (384)
357 PRK14954 DNA polymerase III su 94.6 0.2 4.4E-06 55.7 10.3 126 365-516 40-165 (620)
358 PHA00729 NTP-binding motif con 94.6 0.27 5.7E-06 47.3 9.7 77 450-529 59-140 (226)
359 PRK06964 DNA polymerase III su 94.5 0.23 4.9E-06 51.2 9.9 42 349-391 2-48 (342)
360 COG3973 Superfamily I DNA and 94.5 0.23 5E-06 53.5 9.9 89 332-422 188-283 (747)
361 TIGR02928 orc1/cdc6 family rep 94.5 0.23 5E-06 52.1 10.3 24 364-388 41-64 (365)
362 PRK14950 DNA polymerase III su 94.5 0.39 8.5E-06 53.7 12.5 41 474-516 118-158 (585)
363 PRK06067 flagellar accessory p 94.5 0.73 1.6E-05 44.9 13.0 51 363-422 25-75 (234)
364 PTZ00454 26S protease regulato 94.4 0.15 3.2E-06 53.8 8.5 54 324-380 140-196 (398)
365 cd01121 Sms Sms (bacterial rad 94.4 0.29 6.3E-06 51.2 10.4 51 363-422 82-132 (372)
366 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.31 6.6E-06 48.4 10.2 36 363-406 36-71 (259)
367 PRK07940 DNA polymerase III su 94.3 0.087 1.9E-06 55.5 6.5 45 474-520 115-159 (394)
368 COG0541 Ffh Signal recognition 94.3 0.75 1.6E-05 48.0 12.9 130 366-528 103-235 (451)
369 PRK08699 DNA polymerase III su 94.3 0.32 7E-06 49.9 10.4 41 349-390 2-47 (325)
370 TIGR03689 pup_AAA proteasome A 94.3 0.22 4.8E-06 54.0 9.5 17 363-379 216-232 (512)
371 KOG2543|consensus 94.2 0.29 6.2E-06 50.0 9.5 66 475-541 114-181 (438)
372 PRK07471 DNA polymerase III su 94.1 0.3 6.4E-06 51.0 9.9 135 365-516 43-180 (365)
373 PF03796 DnaB_C: DnaB-like hel 94.1 0.22 4.7E-06 49.5 8.6 136 364-516 20-179 (259)
374 PRK06090 DNA polymerase III su 94.1 0.32 7E-06 49.5 9.9 43 348-391 3-52 (319)
375 TIGR01243 CDC48 AAA family ATP 94.1 0.2 4.3E-06 57.7 9.4 55 323-380 447-504 (733)
376 TIGR00580 mfd transcription-re 94.1 0.75 1.6E-05 53.9 14.0 80 398-488 659-742 (926)
377 TIGR01642 U2AF_lg U2 snRNP aux 94.1 0.068 1.5E-06 58.9 5.5 13 452-464 342-354 (509)
378 PRK11034 clpA ATP-dependent Cl 94.1 0.5 1.1E-05 54.1 12.2 20 363-382 207-226 (758)
379 PRK08451 DNA polymerase III su 94.0 0.17 3.7E-06 55.1 8.1 40 474-514 115-154 (535)
380 PRK07993 DNA polymerase III su 94.0 0.31 6.7E-06 50.2 9.6 41 349-390 3-50 (334)
381 PRK10689 transcription-repair 93.9 0.64 1.4E-05 55.8 13.2 91 399-504 809-903 (1147)
382 COG2909 MalT ATP-dependent tra 93.9 0.2 4.3E-06 56.2 8.3 41 478-518 131-171 (894)
383 PRK06904 replicative DNA helic 93.9 0.87 1.9E-05 49.3 13.1 139 363-514 221-381 (472)
384 KOG0733|consensus 93.9 0.27 5.9E-06 53.0 8.9 60 317-379 178-239 (802)
385 PRK06647 DNA polymerase III su 93.9 0.75 1.6E-05 50.9 12.8 43 474-518 117-159 (563)
386 PRK07413 hypothetical protein; 93.8 0.14 3E-06 52.9 6.6 201 299-526 143-358 (382)
387 PRK05896 DNA polymerase III su 93.8 0.37 8E-06 53.1 10.2 43 475-519 118-160 (605)
388 cd03239 ABC_SMC_head The struc 93.8 0.076 1.7E-06 49.4 4.2 42 475-516 115-157 (178)
389 TIGR03881 KaiC_arch_4 KaiC dom 93.8 0.6 1.3E-05 45.3 10.8 51 362-421 19-69 (229)
390 PF05729 NACHT: NACHT domain 93.8 1.7 3.6E-05 39.3 13.2 24 365-389 2-25 (166)
391 KOG0738|consensus 93.7 0.3 6.6E-06 49.8 8.5 65 476-540 304-384 (491)
392 TIGR00678 holB DNA polymerase 93.6 0.32 6.9E-06 45.7 8.3 41 474-516 94-134 (188)
393 PRK04841 transcriptional regul 93.6 0.65 1.4E-05 55.1 12.7 42 478-519 123-164 (903)
394 KOG1133|consensus 93.5 0.12 2.5E-06 56.3 5.6 42 347-388 14-59 (821)
395 COG5008 PilU Tfp pilus assembl 93.5 0.58 1.2E-05 45.4 9.6 45 323-387 105-150 (375)
396 TIGR01243 CDC48 AAA family ATP 93.5 0.22 4.9E-06 57.3 8.4 19 362-380 211-229 (733)
397 PRK13851 type IV secretion sys 93.5 0.12 2.5E-06 53.4 5.4 46 358-412 157-202 (344)
398 TIGR01642 U2AF_lg U2 snRNP aux 93.4 0.11 2.4E-06 57.3 5.5 15 401-415 339-353 (509)
399 PRK04328 hypothetical protein; 93.4 0.67 1.5E-05 45.7 10.5 51 363-422 23-73 (249)
400 PRK14971 DNA polymerase III su 93.4 0.56 1.2E-05 52.5 11.0 44 473-518 118-161 (614)
401 TIGR00763 lon ATP-dependent pr 93.4 0.83 1.8E-05 52.9 12.8 19 362-380 346-364 (775)
402 TIGR00665 DnaB replicative DNA 93.3 0.85 1.8E-05 49.1 12.1 138 363-515 195-353 (434)
403 TIGR01622 SF-CC1 splicing fact 93.3 0.057 1.2E-06 58.6 3.0 18 577-594 414-431 (457)
404 TIGR02639 ClpA ATP-dependent C 93.3 1.2 2.6E-05 51.3 13.7 23 363-385 203-225 (731)
405 PRK00440 rfc replication facto 93.3 1 2.3E-05 46.0 12.2 38 476-514 102-139 (319)
406 PRK13900 type IV secretion sys 93.3 0.26 5.6E-06 50.7 7.5 45 359-412 156-200 (332)
407 PRK07004 replicative DNA helic 93.3 0.54 1.2E-05 50.8 10.3 136 363-515 213-372 (460)
408 PRK03992 proteasome-activating 93.2 0.2 4.3E-06 52.9 6.9 17 364-380 166-182 (389)
409 cd01130 VirB11-like_ATPase Typ 93.2 0.26 5.5E-06 46.3 6.8 33 348-380 9-42 (186)
410 COG2255 RuvB Holliday junction 93.1 0.37 8E-06 47.3 7.8 27 456-489 90-116 (332)
411 TIGR00635 ruvB Holliday juncti 93.1 0.33 7.1E-06 49.5 8.1 17 364-380 31-47 (305)
412 KOG0333|consensus 93.1 0.4 8.6E-06 50.7 8.5 71 398-481 516-590 (673)
413 TIGR01420 pilT_fam pilus retra 93.1 0.25 5.5E-06 51.2 7.3 42 363-411 122-163 (343)
414 TIGR02655 circ_KaiC circadian 93.1 0.56 1.2E-05 51.2 10.2 59 355-422 250-313 (484)
415 COG2804 PulE Type II secretory 93.1 0.23 4.9E-06 52.8 6.8 40 350-390 243-284 (500)
416 PRK08506 replicative DNA helic 93.1 0.76 1.7E-05 49.8 11.1 112 363-489 192-315 (472)
417 TIGR03346 chaperone_ClpB ATP-d 93.0 0.66 1.4E-05 54.3 11.3 20 363-382 194-213 (852)
418 PRK07413 hypothetical protein; 93.0 0.95 2.1E-05 46.9 11.1 53 474-526 123-177 (382)
419 TIGR03880 KaiC_arch_3 KaiC dom 92.9 0.45 9.9E-06 46.0 8.4 51 363-422 16-66 (224)
420 PRK00080 ruvB Holliday junctio 92.9 0.54 1.2E-05 48.5 9.3 18 364-381 52-69 (328)
421 PRK14953 DNA polymerase III su 92.8 1.6 3.5E-05 47.4 13.2 41 474-516 117-157 (486)
422 CHL00176 ftsH cell division pr 92.8 0.34 7.4E-06 54.3 8.2 17 364-380 217-233 (638)
423 COG1485 Predicted ATPase [Gene 92.8 1.7 3.8E-05 44.1 12.3 108 364-520 66-174 (367)
424 TIGR01622 SF-CC1 splicing fact 92.7 0.079 1.7E-06 57.5 3.0 27 552-578 415-441 (457)
425 PRK06305 DNA polymerase III su 92.6 0.3 6.5E-06 52.6 7.2 38 474-512 119-156 (451)
426 PRK04537 ATP-dependent RNA hel 92.6 0.69 1.5E-05 51.5 10.3 75 398-485 256-334 (572)
427 TIGR01650 PD_CobS cobaltochela 92.6 0.81 1.7E-05 46.6 9.7 24 357-380 58-81 (327)
428 KOG0741|consensus 92.5 0.29 6.3E-06 51.9 6.5 56 322-380 212-273 (744)
429 PRK10436 hypothetical protein; 92.5 0.23 5E-06 53.4 6.0 24 364-388 219-242 (462)
430 PHA00012 I assembly protein 92.5 2.8 6.1E-05 42.3 13.0 57 474-530 79-140 (361)
431 PRK08840 replicative DNA helic 92.4 1.7 3.7E-05 46.9 12.6 26 363-388 217-242 (464)
432 PF08648 DUF1777: Protein of u 92.4 0.3 6.5E-06 45.5 6.0 7 187-193 132-138 (180)
433 PRK08006 replicative DNA helic 92.3 1.9 4.1E-05 46.7 12.8 139 363-514 224-383 (471)
434 PRK13764 ATPase; Provisional 92.2 0.33 7.1E-06 53.7 7.0 26 362-388 256-281 (602)
435 KOG0652|consensus 92.2 1.2 2.5E-05 43.1 9.6 41 477-517 265-318 (424)
436 COG2874 FlaH Predicted ATPases 92.2 8.9 0.00019 36.3 15.1 139 366-536 31-189 (235)
437 PHA03372 DNA packaging termina 92.2 1.4 3E-05 48.1 11.2 131 362-517 201-337 (668)
438 TIGR00631 uvrb excinuclease AB 92.2 4 8.7E-05 46.1 15.6 118 397-527 440-563 (655)
439 PRK05595 replicative DNA helic 92.1 0.49 1.1E-05 51.0 8.2 38 363-407 201-238 (444)
440 PRK08760 replicative DNA helic 92.1 1.2 2.6E-05 48.4 11.1 112 363-489 229-352 (476)
441 TIGR00767 rho transcription te 92.1 0.42 9E-06 49.9 7.1 26 362-388 167-192 (415)
442 PF01637 Arch_ATPase: Archaeal 92.0 0.53 1.1E-05 45.4 7.7 40 478-517 120-165 (234)
443 PRK06321 replicative DNA helic 92.0 2.4 5.3E-05 45.9 13.2 110 365-489 228-349 (472)
444 TIGR01241 FtsH_fam ATP-depende 92.0 0.42 9.1E-06 52.4 7.5 17 364-380 89-105 (495)
445 PRK05636 replicative DNA helic 91.9 0.46 1E-05 51.8 7.7 45 364-415 266-313 (505)
446 cd01126 TraG_VirD4 The TraG/Tr 91.9 0.13 2.9E-06 54.3 3.5 55 365-433 1-55 (384)
447 KOG0739|consensus 91.9 5.2 0.00011 39.7 13.8 129 358-540 156-301 (439)
448 PRK10787 DNA-binding ATP-depen 91.9 1.5 3.2E-05 50.7 12.0 19 362-380 348-366 (784)
449 PF05707 Zot: Zonular occluden 91.8 0.31 6.7E-06 46.0 5.5 53 476-528 79-136 (193)
450 PRK09165 replicative DNA helic 91.7 1.2 2.6E-05 48.7 10.6 119 364-489 218-354 (497)
451 KOG0737|consensus 91.7 0.55 1.2E-05 47.8 7.2 52 327-381 90-145 (386)
452 KOG2028|consensus 91.6 0.89 1.9E-05 46.1 8.5 18 365-382 164-181 (554)
453 PTZ00361 26 proteosome regulat 91.6 0.59 1.3E-05 49.9 7.9 18 363-380 217-234 (438)
454 TIGR02397 dnaX_nterm DNA polym 91.6 0.85 1.8E-05 47.5 9.2 17 365-381 38-54 (355)
455 PRK07133 DNA polymerase III su 91.6 1.1 2.3E-05 50.6 10.2 43 474-518 116-158 (725)
456 PRK09354 recA recombinase A; P 91.6 1.4 3.1E-05 45.3 10.3 42 363-412 60-101 (349)
457 PRK07399 DNA polymerase III su 91.6 1.2 2.5E-05 45.6 9.7 40 474-515 122-161 (314)
458 COG0630 VirB11 Type IV secreto 91.6 0.37 8E-06 49.1 6.1 57 347-412 126-183 (312)
459 KOG0741|consensus 91.6 1.7 3.6E-05 46.4 10.7 68 331-408 494-573 (744)
460 KOG2036|consensus 91.6 0.98 2.1E-05 49.4 9.3 146 350-518 255-412 (1011)
461 PRK05342 clpX ATP-dependent pr 91.5 0.44 9.6E-06 50.5 6.8 20 362-381 107-126 (412)
462 KOG0991|consensus 91.5 0.68 1.5E-05 44.1 7.1 18 364-381 49-66 (333)
463 PF02534 T4SS-DNA_transf: Type 91.5 0.21 4.6E-06 54.3 4.6 56 364-433 45-100 (469)
464 PRK10865 protein disaggregatio 91.5 1.5 3.1E-05 51.4 11.6 19 364-382 200-218 (857)
465 KOG2227|consensus 91.5 0.41 8.9E-06 50.1 6.3 47 363-415 175-222 (529)
466 KOG0344|consensus 91.5 4.3 9.2E-05 43.8 13.8 97 372-486 366-466 (593)
467 PF12846 AAA_10: AAA-like doma 91.4 0.53 1.2E-05 47.5 7.2 43 363-413 1-43 (304)
468 PF03266 NTPase_1: NTPase; In 91.4 0.08 1.7E-06 48.7 0.9 28 475-502 94-123 (168)
469 TIGR02012 tigrfam_recA protein 91.3 0.71 1.5E-05 47.0 7.8 42 363-412 55-96 (321)
470 COG4152 ABC-type uncharacteriz 91.3 9.6 0.00021 36.9 14.6 125 474-598 146-276 (300)
471 PHA00350 putative assembly pro 91.2 0.99 2.1E-05 47.3 8.8 23 366-388 4-27 (399)
472 COG1219 ClpX ATP-dependent pro 91.2 0.15 3.3E-06 50.6 2.7 146 362-518 96-259 (408)
473 TIGR03819 heli_sec_ATPase heli 91.1 0.55 1.2E-05 48.5 6.9 62 339-411 155-217 (340)
474 PRK11192 ATP-dependent RNA hel 91.1 1.1 2.4E-05 48.2 9.6 72 398-482 244-319 (434)
475 cd00983 recA RecA is a bacter 91.1 0.95 2.1E-05 46.2 8.4 42 363-412 55-96 (325)
476 TIGR00602 rad24 checkpoint pro 91.1 1 2.2E-05 50.4 9.2 18 364-381 111-128 (637)
477 TIGR01242 26Sp45 26S proteasom 91.0 0.46 1E-05 49.8 6.4 18 363-380 156-173 (364)
478 PRK06620 hypothetical protein; 91.0 1.7 3.7E-05 41.7 9.7 108 400-520 15-126 (214)
479 COG4098 comFA Superfamily II D 91.0 6.1 0.00013 39.9 13.4 112 397-522 303-421 (441)
480 TIGR03345 VI_ClpV1 type VI sec 90.7 0.81 1.7E-05 53.4 8.4 18 364-381 209-226 (852)
481 cd01393 recA_like RecA is a b 90.6 0.73 1.6E-05 44.6 7.0 44 363-408 19-62 (226)
482 cd01129 PulE-GspE PulE/GspE Th 90.6 0.68 1.5E-05 46.0 6.8 37 351-388 66-104 (264)
483 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.6 2.5 5.5E-05 37.7 9.9 40 474-516 86-125 (144)
484 PRK13897 type IV secretion sys 90.6 0.32 7E-06 54.0 4.8 56 364-433 159-214 (606)
485 PRK14970 DNA polymerase III su 90.5 2.2 4.7E-05 44.8 10.9 23 365-388 41-63 (367)
486 cd01128 rho_factor Transcripti 90.5 0.95 2.1E-05 44.5 7.6 20 360-379 13-32 (249)
487 PRK10590 ATP-dependent RNA hel 90.5 1.5 3.3E-05 47.5 10.0 72 398-482 244-319 (456)
488 TIGR02538 type_IV_pilB type IV 90.4 0.57 1.2E-05 52.0 6.7 38 350-388 301-340 (564)
489 COG1221 PspF Transcriptional r 90.4 1.5 3.2E-05 45.9 9.2 138 361-540 99-249 (403)
490 TIGR00416 sms DNA repair prote 90.4 1.2 2.7E-05 47.9 9.0 51 363-422 94-144 (454)
491 KOG0732|consensus 90.3 0.49 1.1E-05 54.8 6.1 142 327-520 263-417 (1080)
492 PRK04837 ATP-dependent RNA hel 90.3 1.4 3E-05 47.3 9.4 82 382-481 243-328 (423)
493 PRK10917 ATP-dependent DNA hel 90.2 9.3 0.0002 43.7 16.3 157 353-528 399-601 (681)
494 TIGR02858 spore_III_AA stage I 90.1 1.8 3.9E-05 43.1 9.3 130 349-514 95-226 (270)
495 COG1132 MdlB ABC-type multidru 90.1 1.3 2.8E-05 49.5 9.3 141 360-514 352-521 (567)
496 cd00267 ABC_ATPase ABC (ATP-bi 90.0 0.5 1.1E-05 42.8 5.0 116 360-525 22-147 (157)
497 KOG1513|consensus 89.9 0.28 6.2E-06 54.1 3.6 160 348-516 264-453 (1300)
498 COG1197 Mfd Transcription-repa 89.9 3.6 7.9E-05 48.3 12.5 133 353-500 732-893 (1139)
499 CHL00095 clpC Clp protease ATP 89.9 2.1 4.4E-05 50.1 11.0 126 354-526 189-324 (821)
500 PF06733 DEAD_2: DEAD_2; Inte 89.8 0.24 5.3E-06 45.8 2.7 54 436-490 106-159 (174)
No 1
>KOG0334|consensus
Probab=100.00 E-value=1.5e-71 Score=600.48 Aligned_cols=493 Identities=56% Similarity=0.894 Sum_probs=413.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhHHHhhhhcccccCCCCCCCCCCccCCCCCCCcccccc--------------cc
Q psy12410 104 EATRLELEMQKRRDRIERWRAERKKKDIETIKKDIKSNLSSGLGGSAPMKKWNLEDDSDEDEND--------------NK 169 (615)
Q Consensus 104 ~~~~~e~~~~~r~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~~--------------~~ 169 (615)
.+..+.+++.+++.+.+.|.+.+++++........+..++ ....++.|+++++.++.... ..
T Consensus 142 ~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~t~~~~~~~----~~~s~k~~~l~~~~d~~~~~~~~~~~s~q~~~~~~~ 217 (997)
T KOG0334|consen 142 IQARLAEELRKRRERVEKWKELKRKEEKEKVVTLMLNVSD----EKNSKKLWELEDEDDDDSANPAELGWSEQDVPELMK 217 (997)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcchHHhhhhhhccccc----ccccccceEecCCCCccccCccccchhhccchhhcc
Confidence 3456778889999999999999888775544221221222 56678999999765544311 00
Q ss_pred ccCCCCCCCCCChHHHHHhhhHHhhhh-cCCCCCCCCCCCCCCCCCCCCCceeEEeccccchhhh-hccccccc---ccC
Q psy12410 170 DENGKTAEEDIDPLDAFMQGVHEEMRK-VNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEK-AKGELMEE---NQD 244 (615)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~ 244 (615)
......-+++.+|+|+||..+...... ....... +.. .+............ ..+...+. +.|
T Consensus 218 ~p~~~~~dd~~d~ld~~m~~~~~~~~~~~~~~~~~--------~~~-----~~~~s~~~~~~~~~~~~g~v~e~~~~~~D 284 (997)
T KOG0334|consen 218 APNLMLVDDEEDPLDAFMEQMVGKVLAKFSNSSHS--------KAQ-----VVEVSKDARKGLNPKLSGFVIEPGLVNGD 284 (997)
T ss_pred CccccccccccchHHHHHHHHHHHHHHHhcCCCcc--------ccc-----ccccchhhhccCCccccceeccCCcCCcc
Confidence 111123477899999999998755322 2211110 000 00000111111111 22333332 223
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHhhccCCCCCCCccccCCccccccccChhhhcCCHHHHHHHHhhhcCeEecCCCCCCc
Q psy12410 245 GLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRVKGKGCPRP 324 (615)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~p~~ 324 (615)
..++..+++ .+....+..+..+.++.+..++|+.+.|.||+++||.+..++..|+..++..|+..+.+|.+.|..+|.|
T Consensus 285 ~~e~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkp 363 (997)
T KOG0334|consen 285 NEEVELNGS-FDNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKP 363 (997)
T ss_pred hhhhhhccc-cchHHHHHHhccccccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcc
Confidence 333333332 4445555566666666788999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+++|.++|+...|+..++++||..|+|||.+|||+|++|+|+|++|.||||||++|+||++.|+..|++...+.||.+||
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
|+|||+||.||++++..|+..+++.++|+|||.....++..++.|+.|+|||||++++++..+.+++.+|.++.|||+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-hhHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-EEQKMLKL 563 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l 563 (615)
||+|++++|.+++..|+.++++.+|+++||||+|..|+.+++..++.|+.+.++..+..+..|.|.+.++. ...|+..|
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+++|..+...+++||||.++..|+.|...|.+.||.|..|||+.+|.+|++
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~s 654 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSS 654 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHh
Confidence 999999999999999999999999999999999999999999999999986
No 2
>KOG0339|consensus
Probab=100.00 E-value=3.4e-70 Score=542.58 Aligned_cols=346 Identities=47% Similarity=0.760 Sum_probs=333.2
Q ss_pred HHhhccCCCCCCCccccCCccccccccChhhhcCCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCC
Q psy12410 266 SKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQN 345 (615)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~ 345 (615)
++..+++++++|+.+.|.||.++||.++..|..++..++..++..|+ +++.|..+|.|+++|.++||...|+.++.+..
T Consensus 164 kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Ln-lrv~g~s~~rpvtsfeh~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 164 KRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLN-LRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSE 242 (731)
T ss_pred cccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhc-ceeccCCCCCCcchhhhcCchHHHHHHHhhhh
Confidence 35556799999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
|++|||+|++++|..++|+++|.+|.||||||.+|++|++.|++.++.+..+++|..|||||||+||.|++.++++|++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
+|++++++|||.+.++|+..|+.|+.||||||++|++++... ..+|.+++|||||||++|+++||+++|..|..+++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK---atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK---ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh---cccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999865 48899999999999999999999999999999999
Q ss_pred CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-hhHHHHHHHHHHhccCCCCcEEEEeCCcc
Q psy12410 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-EEQKMLKLLELLGIYQDQGSVIVFVDKQE 584 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~LIF~~s~~ 584 (615)
|++|+|+|||||+..++.+++.+|.+|+.+..+........|.|.+.+|. ...|+.||+..|..+...|++||||....
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 99999999999999999999999999999999988889999999998886 56799999999999888899999999999
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 585 NADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 585 ~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.++.|+..|+..||+|.++||+|+|.+|..+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ 510 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEV 510 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHH
Confidence 9999999999999999999999999999753
No 3
>KOG0331|consensus
Probab=100.00 E-value=2.5e-58 Score=475.92 Aligned_cols=332 Identities=45% Similarity=0.788 Sum_probs=301.7
Q ss_pred cccCCccccccccChhhhcCCHHHHHHHHhhhcCeEecCCC-CCCcccccc-----------------------------
Q psy12410 280 IEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRVKGKG-CPRPIKTWA----------------------------- 329 (615)
Q Consensus 280 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~-~p~~~~~~~----------------------------- 329 (615)
..+.+|.++||.+++........+...++.... +.+.+.. +|.|+.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 94 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNE-ITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQ 94 (519)
T ss_pred cccCcccccccccccccccccccccccccCcce-eeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhh
Confidence 568889999999998888887777777777665 7777655 676665544
Q ss_pred ccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhc-CCCCCCCCCCeEEEEcCc
Q psy12410 330 QCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILD-QPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 330 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~~lil~Pt 408 (615)
.++|+..+...+...||..|||||.+.||+++.|+|++++|.||||||++|++|++.|+.. +.......+|++|||+||
T Consensus 95 ~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 95 ELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPT 174 (519)
T ss_pred cccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCc
Confidence 4556667777778999999999999999999999999999999999999999999999998 666777889999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc
Q psy12410 409 RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488 (615)
Q Consensus 409 r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~ 488 (615)
|+||.|+...+..|+..+.++.+|+|||.++..|...+..|++|+|||||+|++++..+. .+|++|.|+||||||+|
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhh
Confidence 999999999999999999999999999999999999999999999999999999999874 88999999999999999
Q ss_pred ccCCcHHHHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcc--cccCCeEEEEEecChhHHHHHHHH
Q psy12410 489 FDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRS--VVCKEVEQHVIVLDEEQKMLKLLE 565 (615)
Q Consensus 489 ~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ 565 (615)
++|||.+++..|+.++ ++.+|+|++|||||..+..|+..|+.+|+.+.++... .+..+|.|.+..|+...|...|..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 7778999999999999999999999999999998664 557899999999999999999999
Q ss_pred HHhccC--CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 566 LLGIYQ--DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 566 ~l~~~~--~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+|..+. ..++|||||+|+..|+.|+..|...||+|.+|||+++|.+|+.+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 998775 56799999999999999999999999999999999999999864
No 4
>KOG0336|consensus
Probab=100.00 E-value=3.9e-56 Score=431.87 Aligned_cols=331 Identities=40% Similarity=0.668 Sum_probs=307.6
Q ss_pred cccCCccccccccChhhhcCCHHHHHHHHhhhcCeEecC------CCCCCccccccc-cCCCHHHHHHHHHCCCCCCCHH
Q psy12410 280 IEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRVKG------KGCPRPIKTWAQ-CGVSKKILDALKKQNYEKPTPI 352 (615)
Q Consensus 280 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~~~------~~~p~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~ 352 (615)
...+|..+|||.+.++.++++..++.+++++..+|.+.. ..+|.|..+|++ ++-.+.+++++.+.||.+|||+
T Consensus 167 ~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPI 246 (629)
T KOG0336|consen 167 AKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPI 246 (629)
T ss_pred ccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcc
Confidence 458899999999999999999999999999888787742 457999999998 4678999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCC-CCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEE
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP-LEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVV 431 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~-~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 431 (615)
|.||||++++|.|+|++|.||+|||++|++|.+.|+..++. ....++|.+|+++||++||.|+.-+++++.- .|+..+
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksv 325 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSV 325 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceE
Confidence 99999999999999999999999999999999999988864 4456799999999999999999888888754 488999
Q ss_pred EEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEE
Q psy12410 432 CVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 511 (615)
Q Consensus 432 ~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l 511 (615)
|+|||.+..+++..++.|.+|+||||++|.++...+ .++|.+|+||||||||+|+||||++++.+|+-.++|++|++
T Consensus 326 c~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 326 CVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred EEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 999999999999999999999999999999998876 58999999999999999999999999999999999999999
Q ss_pred EEeccCChHHHHHHHHHcCCCEEEEECCcccc-cCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHH
Q psy12410 512 MFSATFPRQMEALARRILNKPIEIQVGGRSVV-CKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLL 590 (615)
Q Consensus 512 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~ 590 (615)
+.|||||+.+..|+..|+.+|+.++++....+ +..|.|++++..+.+|+..+..++.......++||||..+..|+.|.
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhcc
Confidence 99999999999999999999999999987765 57899999888889999888888888888899999999999999999
Q ss_pred HHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 591 FHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 591 ~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..|.-.||.+.+|||+-+|.||+.
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREM 506 (629)
T ss_pred chhhhcccchhhccCChhhhhHHH
Confidence 999999999999999999999975
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-54 Score=470.91 Aligned_cols=341 Identities=42% Similarity=0.740 Sum_probs=312.7
Q ss_pred cCCCCCCCccccCCccccccccChhhhcCCHHHHHHHHhhhcCeEe-cCCCCCCccccccccCCCHHHHHHHHHCCCCCC
Q psy12410 271 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRV-KGKGCPRPIKTWAQCGVSKKILDALKKQNYEKP 349 (615)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~-~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~ 349 (615)
.+..++|+...++||.++||.+++.+..++..++..++.... |.+ .|..+|.|+.+|.+++|++.|++.|..+||..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKE-ITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcC-cEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 477889999999999999999999999999999999998876 765 799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcE
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 429 (615)
||+|.++||.+++|+|+|++||||||||++|++|++.+++.++......+|.+|||+||++||.|+...+..|+...++.
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999987755445668999999999999999999999999988999
Q ss_pred EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCc
Q psy12410 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 509 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q 509 (615)
+.+++||.....+...+..+++|||+||++|++++... ..+|.++.+|||||||+|++++|..++..|+..+++++|
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 99999999999998999999999999999999999865 367899999999999999999999999999999999999
Q ss_pred EEEEeccCChHHHHHHHHHcC-CCEEEEECCcc-cccCCeEEEEEecChhHHHHHHHHHHhccC-CCCcEEEEeCCcchH
Q psy12410 510 TVMFSATFPRQMEALARRILN-KPIEIQVGGRS-VVCKEVEQHVIVLDEEQKMLKLLELLGIYQ-DQGSVIVFVDKQENA 586 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~~~~~~-~p~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a 586 (615)
+|+||||+|..+..++..++. +|+.+.++... .....+.+.+..+....|...|..+|.... ...++||||+++..|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999999999999999886 68888877554 334678888888888888888888888765 567999999999999
Q ss_pred HHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 587 DSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 587 ~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+.|+..|...|+.+.++||+|++.+|+.+
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 99999999999999999999999999753
No 6
>KOG0333|consensus
Probab=100.00 E-value=6.5e-54 Score=428.92 Aligned_cols=317 Identities=42% Similarity=0.686 Sum_probs=298.2
Q ss_pred ChhhhcCCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccC
Q psy12410 293 VPEIARMTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKT 372 (615)
Q Consensus 293 ~~~~~~~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~T 372 (615)
...+..|+..+|.-|++.+. |.++|..+|.|+.+|.+.+|+.+++..+.+.||..|+|+|.++||..++++|+|++|.|
T Consensus 213 ~k~l~Em~~rdwri~redyn-is~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaET 291 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYN-ISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAET 291 (673)
T ss_pred hhhHHhcCCccceeeeccee-eeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEec
Confidence 34567789999999999987 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhHHHHHHHHhcCCCCC----CCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc
Q psy12410 373 GSGKTVAFVLPLLRHILDQPPLE----ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR 448 (615)
Q Consensus 373 GsGKT~~~~l~~l~~~~~~~~~~----~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 448 (615)
|||||++|++|++.++...|+.. ...||.++||+|||+||+||..+..+|+..++++++.+.||.+..++...+..
T Consensus 292 gsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~ 371 (673)
T KOG0333|consen 292 GSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM 371 (673)
T ss_pred cCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc
Confidence 99999999999999998887543 33599999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC---------------------
Q psy12410 449 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD--------------------- 507 (615)
Q Consensus 449 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~--------------------- 507 (615)
||+|+||||++|++.|... ..-|++|.|||+||||+|+||||++++..|+.+++..
T Consensus 372 gceiviatPgrLid~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~ 448 (673)
T KOG0333|consen 372 GCEIVIATPGRLIDSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSS 448 (673)
T ss_pred cceeeecCchHHHHHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccc
Confidence 9999999999999999875 3668999999999999999999999999999998531
Q ss_pred ----CcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCc
Q psy12410 508 ----RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQ 583 (615)
Q Consensus 508 ----~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~ 583 (615)
+|+++||||+|+.++.+++.||.+|+.++++..+.+.+.|.|.++.+....|+..|.++|... ...++|||+|++
T Consensus 449 ~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~k 527 (673)
T KOG0333|consen 449 SKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTK 527 (673)
T ss_pred ccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 799999999999999999999999999999999999999999999999999999999999987 456899999999
Q ss_pred chHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 584 ENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 584 ~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+.|+.||..|.+.||.|+.|||+.+|.+|+.
T Consensus 528 k~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 528 KGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred hhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 9999999999999999999999999999985
No 7
>KOG0341|consensus
Probab=100.00 E-value=9.7e-55 Score=419.47 Aligned_cols=330 Identities=36% Similarity=0.607 Sum_probs=307.7
Q ss_pred ccccCCccccccccChhhhcCCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q psy12410 279 TIEYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIP 358 (615)
Q Consensus 279 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~ 358 (615)
.+.|...-+..|.++--+..|++++....|+++. |.+.|..+|+||.+|.++.|+..|++.|.+.|+..|||+|.|.||
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~-I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP 202 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLH-ILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP 202 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhhe-EEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc
Confidence 3456555566777888899999999999999997 999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCC---CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc------CcE
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP---PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL------GLR 429 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~------~~~ 429 (615)
.+++|+|+|.+|-||||||++|.+|++.+.+.+. +...+.||..|||||+|+||.|++..+..++..+ .++
T Consensus 203 vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lR 282 (610)
T KOG0341|consen 203 VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELR 282 (610)
T ss_pred eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 9999999999999999999999999999888764 4566789999999999999999999999988765 267
Q ss_pred EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCc
Q psy12410 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 509 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q 509 (615)
...+.||.+..++...+..|.+|+|+|||+|.++|... ..+|.-|.|+++||||+|+|+||...+..|+.++..++|
T Consensus 283 s~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK---~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 283 SLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK---IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh---hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhh
Confidence 88899999999999999999999999999999999864 477889999999999999999999999999999999999
Q ss_pred EEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHH
Q psy12410 510 TVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSL 589 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l 589 (615)
+++||||+|..++.|++..|..|+++.++..+....++.|.+.++.++.|..+|+++|... ..+|||||..+..++.+
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~I 437 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDI 437 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 44899999999999999
Q ss_pred HHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 590 LFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 590 ~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+++|.-.|..++.||||.+|++|.+
T Consensus 438 hEYLLlKGVEavaIHGGKDQedR~~ 462 (610)
T KOG0341|consen 438 HEYLLLKGVEAVAIHGGKDQEDRHY 462 (610)
T ss_pred HHHHHHccceeEEeecCcchhHHHH
Confidence 9999999999999999999999975
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-49 Score=431.82 Aligned_cols=339 Identities=34% Similarity=0.536 Sum_probs=303.3
Q ss_pred CCCCCCCcccc-CCccccccccChhhhc-CCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCC
Q psy12410 272 LSKVDHSTIEY-LPFRKDFYVEVPEIAR-MTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKP 349 (615)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~f~~~~~~~~~-~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~ 349 (615)
-..+++....+ ++|.++||...+.... ++..++..++..+. |.+.|..+|.|+.+|.+++|++.|++.|...||..|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p 144 (518)
T PLN00206 66 RVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLE-IHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP 144 (518)
T ss_pred cCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCC-CEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC
Confidence 45667777765 7889999998877754 99999999999886 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCC--CCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP--LEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
||+|.++||.++.|+|+|++||||||||++|++|++.+++.... .....++++|||+||++||.|++..+..+....+
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999875421 1123689999999999999999999999999889
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 507 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~ 507 (615)
+.+.+++||.....+...+..+++|+|+||++|.+++... ...+.++.+|||||||+|++++|..++..|+..+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~ 300 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQ 300 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CC
Confidence 9999999999999998888889999999999999999865 3678999999999999999999999999999888 46
Q ss_pred CcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCC-CCcEEEEeCCcchH
Q psy12410 508 RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQD-QGSVIVFVDKQENA 586 (615)
Q Consensus 508 ~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~LIF~~s~~~a 586 (615)
+|+|+||||+++.++.++..++.+++.+.++........+.+.++.+....+...|..+|..... ..++||||+++..|
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGA 380 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhH
Confidence 89999999999999999999999999998887776677888888888888888888888875432 45899999999999
Q ss_pred HHHHHHhhc-CCCcEEEEcCCCChhhhhcC
Q psy12410 587 DSLLFHSMD-PCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 587 ~~l~~~L~~-~g~~~~~lhg~~~~~eR~~v 615 (615)
+.|+..|.. .|+.+..+||+|++.+|..+
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~i 410 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERREV 410 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHHHH
Confidence 999999975 69999999999999999753
No 9
>KOG0330|consensus
Probab=100.00 E-value=2.3e-51 Score=397.54 Aligned_cols=281 Identities=34% Similarity=0.572 Sum_probs=267.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
..+|.+|++.+.|++++...|+..||++|.++||.++.|+|+|+.|.||||||.+|++|++++++..+ ..+++||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~lV 134 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFALV 134 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999875 3599999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
|+|||+||.||.+.+..+....|+.++++.||.+.-.+...+...++|||||||+|.+.+.... .++|..+.|+|+||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk--gf~le~lk~LVlDE 212 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK--GFSLEQLKFLVLDE 212 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc--CccHHHhHHHhhch
Confidence 9999999999999999999999999999999999999999999999999999999999998543 47799999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLL 564 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 564 (615)
||+++++.|...+.+|+..++..+|+++||||+|..+..+...-+.+|+.|.+.....+...+.|.|..++...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
.+|.... +..+||||++...+..++-.|...|+.|..|||+|+|..|-
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 9999775 47899999999999999999999999999999999999873
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-49 Score=423.06 Aligned_cols=283 Identities=43% Similarity=0.699 Sum_probs=260.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
..|.+|+|++.++++|.+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++++.... .....+ +|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999976421 011122 9999
Q ss_pred cCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
+|||+||.|+++.+..++... ++.+++++||.+...+...+..|++|||||||+|++++... ..++..+.++|+||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDE 182 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDE 182 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEecc
Confidence 999999999999999999998 79999999999999999999999999999999999999976 47899999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCccc--ccCCeEEEEEecChhH-HHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSV--VCKEVEQHVIVLDEEQ-KML 561 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~-k~~ 561 (615)
||+|+++||...+..|+..+++++|+++||||+|..+..++..++.+|+.+.+..... +...|.|.++.+.... |..
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888885555 7889999999998766 998
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.|..++.... ..++||||+|+..|+.|+..|...||+|..|||+|+|.+|.++
T Consensus 263 ~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~ 315 (513)
T COG0513 263 LLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRA 315 (513)
T ss_pred HHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHH
Confidence 9988888664 3479999999999999999999999999999999999999863
No 11
>KOG0338|consensus
Probab=100.00 E-value=6.2e-48 Score=384.53 Aligned_cols=283 Identities=33% Similarity=0.480 Sum_probs=260.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.+|.+++|+..|+.++..+||..|||||..+||..+-|+|+..||.||||||.+|++|+|..++..|.. ....+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 468889999999999999999999999999999999999999999999999999999999999987633 345689999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
||||+||.|++..+++++...+|.++++.||.+...|-..|..++||||+|||+|++.|.... .++|.+|.++|+|||
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLDEA 336 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEechH
Confidence 999999999999999999999999999999999999999999999999999999999998654 367999999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC---hhHHHHH
Q psy12410 486 DRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD---EEQKMLK 562 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~ 562 (615)
|+|++.+|..++..|+..++.++|+++||||++..+.+|+..-|++|+.|.+.+...+...+.|.++-+. +..+-..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999888889998887654 3445556
Q ss_pred HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 563 LLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 563 l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
|..++.... ...||||+.|+..|..|.-.|--.|+++.-|||.++|.+|=
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRl 466 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRL 466 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHH
Confidence 666666553 56899999999999999988888999999999999999984
No 12
>KOG0335|consensus
Probab=100.00 E-value=8e-47 Score=383.72 Aligned_cols=298 Identities=38% Similarity=0.640 Sum_probs=276.2
Q ss_pred eEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCC
Q psy12410 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP 393 (615)
Q Consensus 314 i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~ 393 (615)
+.+.|..+|.++..|.+-.+.+.|+.++...++..|||+|+.+||.|..|+++++||+||||||.+|++|++.+++....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 66789999999999999899999999999999999999999999999999999999999999999999999999988743
Q ss_pred C-----CCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC
Q psy12410 394 L-----EETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS 468 (615)
Q Consensus 394 ~-----~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~ 468 (615)
. .....|.+|||+|||+||.|+++++.+|.-..++.++.+|||.+...+...+..+|+|+|||||+|.+++....
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 1 11236999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCcccCCCccEEEEcccccccc-CCcHHHHHHHHHhcCC----CCcEEEEeccCChHHHHHHHHHcCC-CEEEEECCccc
Q psy12410 469 GRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRP----DRQTVMFSATFPRQMEALARRILNK-PIEIQVGGRSV 542 (615)
Q Consensus 469 ~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~----~~q~l~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~~ 542 (615)
+.|..+.||||||||+|+| |+|.+++.+|+.+..- .+|++|||||+|..++.++..++.+ ++.+.++..+.
T Consensus 222 ---i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ---ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred ---eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 7899999999999999999 9999999999998743 7899999999999999999999986 89999999999
Q ss_pred ccCCeEEEEEecChhHHHHHHHHHHhccC---CCC-----cEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 543 VCKEVEQHVIVLDEEQKMLKLLELLGIYQ---DQG-----SVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 543 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...++.|.+..+....|...|+++|.... ..+ ++||||.++..|+.|+..|...|+++..|||+.+|.+|++
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999998554 234 7999999999999999999999999999999999999975
No 13
>KOG0328|consensus
Probab=100.00 E-value=9.1e-47 Score=350.61 Aligned_cols=287 Identities=28% Similarity=0.482 Sum_probs=265.2
Q ss_pred CCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCC
Q psy12410 320 GCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDG 399 (615)
Q Consensus 320 ~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 399 (615)
.-..++.+|+++||+..+++.+...||++|+.+|+.||+.|+.|+|+|+++..|+|||.+|.+.++..+--. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 345678899999999999999999999999999999999999999999999999999999998888765322 235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccE
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 479 (615)
.++|||.|||+||.|+.+.+..+...+++.+..+.||.+..+.+..+..|++++.+|||++.+++.... ..-+.+.+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkm 172 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKM 172 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeE
Confidence 789999999999999999999999999999999999999999999999999999999999999999764 55678999
Q ss_pred EEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhH-
Q psy12410 480 IVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQ- 558 (615)
Q Consensus 480 lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~- 558 (615)
+|+||||.|++.||..++..|+..++|+.|++++|||+|.++.+....|+.+|+.+.+...+.+...|.|+++.++.++
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888665
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 559 KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 559 k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
|+..|..+...+. -.+++|||||+..++.|.+.|....|.+.++||+|.|+||+.|
T Consensus 253 KfdtLcdLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~i 308 (400)
T KOG0328|consen 253 KFDTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKI 308 (400)
T ss_pred hHhHHHHHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHH
Confidence 8888888887653 3479999999999999999999999999999999999999864
No 14
>KOG0343|consensus
Probab=100.00 E-value=7.6e-46 Score=372.77 Aligned_cols=304 Identities=32% Similarity=0.487 Sum_probs=267.8
Q ss_pred CHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q psy12410 300 TPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 300 ~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~ 379 (615)
..+++..+......+. ...+..|.+|+|++..+..|...+|..||.+|.++||..+.|+|+|..|.||||||++
T Consensus 49 Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLA 122 (758)
T ss_pred hHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceee
Confidence 3344555554443232 2346679999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHH
Q psy12410 380 FVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGR 459 (615)
Q Consensus 380 ~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~ 459 (615)
|++|+|.++.... .....|--+|||.|||+||.|++..+.++....++.++.+.||.........+. +++|+|||||+
T Consensus 123 FlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGR 200 (758)
T KOG0343|consen 123 FLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGR 200 (758)
T ss_pred ehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHH
Confidence 9999999987542 334668889999999999999999999999999999999999998666655554 49999999999
Q ss_pred HHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECC
Q psy12410 460 MIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGG 539 (615)
Q Consensus 460 l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 539 (615)
|+..|..+. .++..++.++|+||||+|++|||...+..|+.++++.+||++||||.+..+..+++.-+.+|.+|.+..
T Consensus 201 LLQHmde~~--~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe 278 (758)
T KOG0343|consen 201 LLQHMDENP--NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHE 278 (758)
T ss_pred HHHHhhhcC--CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEec
Confidence 999999874 245678999999999999999999999999999999999999999999999999999999999988874
Q ss_pred cc--cccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhc--CCCcEEEEcCCCChhhhhc
Q psy12410 540 RS--VVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMD--PCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 540 ~~--~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~--~g~~~~~lhg~~~~~eR~~ 614 (615)
.. .++.++.|+|+.++-.+|...|+.+|..+. ..++|||+.|.+.+..++..+++ .|+++.+|||.|+|..|-.
T Consensus 279 ~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 279 NAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred cccccChhhhhheEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 43 467899999999999999999999999874 56899999999999999999986 5999999999999998854
No 15
>KOG0342|consensus
Probab=100.00 E-value=1.4e-45 Score=367.92 Aligned_cols=287 Identities=32% Similarity=0.473 Sum_probs=263.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
..|.++.|++..+.+|..+||..+|++|+..|+.++.|+|+++.|.||+|||++|++|++.++++.+... .++..+|||
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlIi 160 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLII 160 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEEe
Confidence 4577788999999999999999999999999999999999999999999999999999999999876443 378899999
Q ss_pred cCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
+|||+||+|++.+++.++... ++.+..+.||+........+.+++.|+|||||+|.+.++.... ..+..+.++|+||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDE 238 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeec
Confidence 999999999999999999998 8999999999999988889999999999999999999997654 3356778999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCC-CEEEEECCcc--cccCCeEEEEEecChhHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNK-PIEIQVGGRS--VVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~ 561 (615)
||+++++||...+..|+..++..+|+++||||.++.++.+++..+.. |+++.+.+.. .+...+.|-+++++...++.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999998865 8877766544 45688999999999888899
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.|+.+|.++....++||||+|...+..++..|....++|..|||+++|..|..+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 999999988777899999999999999999999999999999999999998753
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-44 Score=394.09 Aligned_cols=288 Identities=32% Similarity=0.536 Sum_probs=256.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCC--CCCCCeE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE--ETDGPMA 402 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~~ 402 (615)
..+|.+|+|++.|++.|...||..|||+|.++||.++.|+|+|++||||||||++|++|++.+++..+... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999987643211 1236899
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEE
Q psy12410 403 IIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 403 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVv 482 (615)
|||+||++||.|+++.+..|....++.+..++|+.....+...+..+++|||+||++|.+++.... ...+..+.+|||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~--~~~l~~v~~lVi 165 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK--VVSLHACEICVL 165 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc--ccchhheeeeEe
Confidence 999999999999999999999999999999999999888887788889999999999999887542 356788999999
Q ss_pred ccccccccCCcHHHHHHHHHhcCC--CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHH
Q psy12410 483 DEADRMFDMGFEPQVMRIIDNVRP--DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKM 560 (615)
Q Consensus 483 DEah~~~~~~~~~~~~~i~~~~~~--~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 560 (615)
||||+|++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.++.+....+.
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQ 245 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHH
Confidence 999999999999999999999876 789999999999999999999999998777766666667788888888888888
Q ss_pred HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 561 LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 561 ~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
..|+.++... ...++||||+++..|+.|+..|...|+.|..|||+|++.+|+.+
T Consensus 246 ~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~i 299 (572)
T PRK04537 246 TLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESL 299 (572)
T ss_pred HHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 8888887653 45689999999999999999999999999999999999999753
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-44 Score=383.40 Aligned_cols=286 Identities=30% Similarity=0.511 Sum_probs=256.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCC--CCCCCeE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE--ETDGPMA 402 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~~ 402 (615)
-.+|.+++|++.+++.|...||..|||+|.++||.+++|+|+|++||||||||++|++|++..++..+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36799999999999999999999999999999999999999999999999999999999999987654221 1346899
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEE
Q psy12410 403 IIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 403 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVv 482 (615)
|||+||++||.|+++.+..++...++.+.+++||.....+...+..+++|+||||++|.+++... ...+..+.+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lVi 163 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVVL 163 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEEE
Confidence 99999999999999999999999999999999999888888888888999999999999998754 367899999999
Q ss_pred ccccccccCCcHHHHHHHHHhcCC--CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHH
Q psy12410 483 DEADRMFDMGFEPQVMRIIDNVRP--DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKM 560 (615)
Q Consensus 483 DEah~~~~~~~~~~~~~i~~~~~~--~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 560 (615)
||||+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+.......|.
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHH
Confidence 999999999999999999999874 577899999999999999999999999888876666667788877777778888
Q ss_pred HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 561 LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 561 ~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..|..++... ...++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 8888887654 3568999999999999999999999999999999999999975
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-44 Score=386.41 Aligned_cols=284 Identities=37% Similarity=0.650 Sum_probs=255.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCC-CCCCCCeEEEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPL-EETDGPMAIIM 405 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~lil 405 (615)
+|.+|+|++.|++.|...||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+...... .....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998654321 11234689999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
+||++||.|+++.+..++...++.+..++||.....+...+..+++||||||++|++++... ...+..+.+||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeecH
Confidence 99999999999999999999999999999999988888888888999999999999988764 356899999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHH
Q psy12410 486 DRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLE 565 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 565 (615)
|+|++++|...+..++..++..+|+|+||||+++.+..++..++.+|..+.+.........+.+.+..++...+...|..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877666666788888888888777777766
Q ss_pred HHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 566 LLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 566 ~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
++... ...++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~ 286 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Confidence 66543 4568999999999999999999999999999999999999975
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.7e-44 Score=394.91 Aligned_cols=282 Identities=33% Similarity=0.576 Sum_probs=257.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
..+|.+|+|++.++++|..+||..|||+|.++||.++.++|+|++||||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 4569999999999999999999999999999999999999999999999999999999999887543 34689999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
|+||++||.|++..+..|...+ ++.++.++||.....+...+..+++|||+||++|++++... ...|.++.+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~lVlD 156 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSKLSGLVLD 156 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcchhhceEEEec
Confidence 9999999999999999998765 78999999999998888888888999999999999998765 3668999999999
Q ss_pred cccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHH
Q psy12410 484 EADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKL 563 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 563 (615)
|||.|++++|...+..|+..++..+|+++||||+|+.+..++..|+.+|..+.+.........+.+.+..+....|...|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877766777888888888888888888
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
..+|... ...++||||+|+..|+.|+..|...||.+.++||+|++.+|+.+
T Consensus 237 ~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~i 287 (629)
T PRK11634 237 VRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQT 287 (629)
T ss_pred HHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHH
Confidence 8888754 34689999999999999999999999999999999999999753
No 20
>KOG0345|consensus
Probab=100.00 E-value=1.8e-44 Score=357.44 Aligned_cols=287 Identities=32% Similarity=0.486 Sum_probs=256.0
Q ss_pred ccccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 326 KTWAQCG--VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 326 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
..|.+++ |.++|++++..+||...||+|..+||.++.++|+++.++||||||++|++|++..+............-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 55999999999999999999999999999999999999999999999999999999665422222235689
Q ss_pred EEcCcHHHHHHHHHHHHHhhhh-cCcEEEEEEcCCChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKS-LGLRVVCVYGGTGISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
||+|||+||.||.+.+..|... .++++.++.||....+++..+.. ++.|+|||||+|.+++..... .+++.++++||
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999999988 57899999999999998888774 588999999999999987432 34577999999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCccc--ccCCeEEEEEecChhHH
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSV--VCKEVEQHVIVLDEEQK 559 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~k 559 (615)
+||||++++|||..++..|+..++.++.|-+||||.+.++.+|++..+.||+.|.+...+. ++..+..+|..|....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776 77789999999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhhhc
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~ 614 (615)
...|+.+|... ..+++|||.+|-..++..+..|... +.++..|||.|.|..|..
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k 298 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAK 298 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHH
Confidence 99999999875 4679999999999999888888754 679999999999999875
No 21
>KOG0326|consensus
Probab=100.00 E-value=1e-46 Score=355.80 Aligned_cols=279 Identities=30% Similarity=0.524 Sum_probs=262.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|+++.|...|+..+...||+.|+|+|.++||.++.|+|+++.|..|+|||.+|++|++..+.-. .+..+++|||
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~ilV 160 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIILV 160 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEEe
Confidence 58889999999999999999999999999999999999999999999999999999999987433 4678899999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
|||+||.|+...++.+.+++++.+.+.+||++...++..+..+.+++|+|||++++++..+ +..++.+.++|+||||
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG---VADLSDCVILVMDEAD 237 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---cccchhceEEEechhh
Confidence 9999999999999999999999999999999999999999999999999999999999875 5779999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHH
Q psy12410 487 RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLEL 566 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 566 (615)
.+++..|.+.+..++..+++.+|++++|||+|-.+..|+..++.+|+.|.... +.+...|.|+|.++.+.+|...|..+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999988774 56778899999999999999999988
Q ss_pred HhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 567 LGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 567 l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+..+.- .+.|||||+...++.||..+.+.||+|..+|+.|-|.+|..|
T Consensus 317 fskLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrV 364 (459)
T KOG0326|consen 317 FSKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRV 364 (459)
T ss_pred HHHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhh
Confidence 887753 478999999999999999999999999999999999999865
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.6e-44 Score=386.01 Aligned_cols=280 Identities=33% Similarity=0.528 Sum_probs=254.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.+|..++|++.+++.|...||..|||+|.+|||.++.|+|+|++||||||||++|++|++.++... ..++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 236789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
+||++||.|+.+.+..++... ++.+..++||.+...+...+..+++|+||||++|.+++.... ..+.++.+|||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~lViDE 155 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT---LDLDALNTLVLDE 155 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC---ccHHHCCEEEEEC
Confidence 999999999999999988755 789999999999999988888899999999999999997642 5688999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLL 564 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 564 (615)
||+|++++|...+..++..+++.+|+|+||||+++.+..++..++.+|..+.+.... ....+.+.++.+....+...|.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876544 3456888888888888888888
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|+.+
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~ 284 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQV 284 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 888754 35689999999999999999999999999999999999999863
No 23
>KOG0346|consensus
Probab=100.00 E-value=3.5e-45 Score=359.19 Aligned_cols=288 Identities=28% Similarity=0.451 Sum_probs=261.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCC-CCCCCCeEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPL-EETDGPMAII 404 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~li 404 (615)
.+|.++||++.|++++.+.|+.+||-+|..|||.++.|+|+++.|.||||||++|++|+++.++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999999987654 4566899999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcC--cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEE
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLG--LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVv 482 (615)
|+||++||.|++..+.++...++ ++++-+.+..+.......+...++|||+||+.|+.++..+. +..+..++++||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEe
Confidence 99999999999999999887664 66666776777666666777779999999999999998764 256889999999
Q ss_pred ccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccc-cCCeEEEEEecChhHHHH
Q psy12410 483 DEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVV-CKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 483 DEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~ 561 (615)
||||.++..||...+..|..++++..|.++||||+..++..+-..+|++|+++.+.+.... ...+.|+++.|.+.+|+.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999999888877665 467999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.++.+++..--.|++|||||+++.|..|.-.|.+.|++...+.|.|++.-|-+|
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 999998866667899999999999999999999999999999999999888653
No 24
>KOG0340|consensus
Probab=100.00 E-value=1.7e-44 Score=345.85 Aligned_cols=285 Identities=32% Similarity=0.494 Sum_probs=256.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
....|..|||.+++.+.|..+|+..|||+|..+||.|+.|+|+|.+|.||||||++|.+|+++.+.+. ..|..+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-----P~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-----PYGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-----CCcceEE
Confidence 35679999999999999999999999999999999999999999999999999999999999998765 4688999
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCC-cccCCCccEEEE
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGR-VTNLRRVTYIVL 482 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~l~~~~~lVv 482 (615)
|++|||+||.|+.+.|..+.+..++++.+++||++.-.+...|...++|||+|||+|.+++..+.+. ..-+.++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999876432 234789999999
Q ss_pred ccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCC--EEEEECCcccccCCeEEEEEecChhHHH
Q psy12410 483 DEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKP--IEIQVGGRSVVCKEVEQHVIVLDEEQKM 560 (615)
Q Consensus 483 DEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p--~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 560 (615)
||||++++..|-..+..++..++..+|+++||||++..+..+.......+ .+....+...++..++|.|+.++...+-
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 99999999999999999999999999999999999888776665544442 2333344555678899999999999999
Q ss_pred HHHHHHHhccCC--CCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 561 LKLLELLGIYQD--QGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 561 ~~l~~~l~~~~~--~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
.+|+.+|..+.. .+.++||+|+...|+.|+-.|...++.+.++||.|+|.+|-
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~ 294 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERL 294 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHH
Confidence 999999997765 77899999999999999999999999999999999999984
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-42 Score=371.68 Aligned_cols=283 Identities=33% Similarity=0.551 Sum_probs=251.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
+|.+++|++.+++.|...||..|+++|.++|+.++.|+|+|++||||+|||++|++|++++++..+. ....++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 123457999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
||++||.|+++.+..++...++.+..++||.....+...+..+++||||||++|++++.... ..+..+.+|||||||
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah 157 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEAD 157 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHH
Confidence 99999999999999999999999999999999888877777789999999999999987653 568899999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh-HHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh-hHHHHHHH
Q psy12410 487 RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR-QMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE-EQKMLKLL 564 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 564 (615)
+|++++|...+..+...++...|+++||||++. .+..++..++.+|+.+.+.........+.+.+..++. ..+...|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999989999999999985 5888999999999988877666666778888777764 56666676
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 238 ~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 238 HLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred HHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHH
Confidence 766542 4568999999999999999999999999999999999999975
No 26
>KOG0348|consensus
Probab=100.00 E-value=1.7e-42 Score=347.58 Aligned_cols=292 Identities=28% Similarity=0.487 Sum_probs=248.9
Q ss_pred CCccccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCC-CCCCCCC
Q psy12410 322 PRPIKTWAQCGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP-PLEETDG 399 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~ 399 (615)
|-.-..|..|||++.+...|.. +++..||.+|+++||.|++|+|++|.++||||||++|++|+++++.... ......|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 4445679999999999999984 6999999999999999999999999999999999999999999998765 3556789
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcCcEE-EEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLGLRV-VCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
+.+|||||||+||.|+|+.+.++..++..-| +++.||..+......|.+|+.|+|+|||+|++.|.... .+.+..+.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~--~i~~s~LR 289 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK--SIKFSRLR 289 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc--hheeeeee
Confidence 9999999999999999999999999876443 66788888888889999999999999999999998653 46688899
Q ss_pred EEEEccccccccCCcHHHHHHHHHhcC-------------CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECC-----c
Q psy12410 479 YIVLDEADRMFDMGFEPQVMRIIDNVR-------------PDRQTVMFSATFPRQMEALARRILNKPIEIQVGG-----R 540 (615)
Q Consensus 479 ~lVvDEah~~~~~~~~~~~~~i~~~~~-------------~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~-----~ 540 (615)
+||+||||++++.||...+..|++.+. +..|.+++|||++..+..|+..-|.+|+.|.... .
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 999999999999999999999988772 2478999999999999999999999999887211 0
Q ss_pred --------------------ccccCCeEEEEEecChhHHHHHHHHHHhcc---CCCCcEEEEeCCcchHHHHHHHhhcC-
Q psy12410 541 --------------------SVVCKEVEQHVIVLDEEQKMLKLLELLGIY---QDQGSVIVFVDKQENADSLLFHSMDP- 596 (615)
Q Consensus 541 --------------------~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~LIF~~s~~~a~~l~~~L~~~- 596 (615)
...+..+.|.|.+++..-++..|..+|... ....++|||..+.+.++.=+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 122345778888899888888888887643 34568999999999888777776431
Q ss_pred ---------------------CCcEEEEcCCCChhhhhcC
Q psy12410 597 ---------------------CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 597 ---------------------g~~~~~lhg~~~~~eR~~v 615 (615)
+.++.-|||+|+|.+|..|
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~ 489 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSV 489 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHH
Confidence 3467899999999999753
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.3e-41 Score=361.64 Aligned_cols=287 Identities=32% Similarity=0.521 Sum_probs=252.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCC--CCCCCe
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE--ETDGPM 401 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 401 (615)
....|.+++|++.|+++|...||..||++|.++|+.++.|+|+|+++|||||||++|++|++..++..+... ..+.++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345788999999999999999999999999999999999999999999999999999999999987654211 123689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEE
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~l 480 (615)
+|||+||++||.|+++.+..+....++.+..++||.....+...+.. .++|||+||++|+.++... ...|+.+.+|
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~l 241 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEVM 241 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCceE
Confidence 99999999999999999999999889999999999888887777754 5899999999999887654 3668899999
Q ss_pred EEccccccccCCcHHHHHHHHHhcCC--CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhH
Q psy12410 481 VLDEADRMFDMGFEPQVMRIIDNVRP--DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQ 558 (615)
Q Consensus 481 VvDEah~~~~~~~~~~~~~i~~~~~~--~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~ 558 (615)
||||||.+++++|...+..|+..++. .+|+|++|||++..+..++..++.+|+.+.+.........+.+++..+....
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh
Confidence 99999999999999999999998854 5799999999999999999999999998887766666677888887777777
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 559 KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 559 k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+...|..++... ...++||||+++..|+.|+..|...|+.+..+||++++.+|..
T Consensus 322 k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 322 KYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 877777777653 3568999999999999999999999999999999999999965
No 28
>KOG0347|consensus
Probab=100.00 E-value=1e-42 Score=350.24 Aligned_cols=289 Identities=28% Similarity=0.490 Sum_probs=250.7
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCC------
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPL------ 394 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~------ 394 (615)
+..+..|.+|+|+..++.+|..+||..||+||...||+++.| .|+|+.|.||||||++|.+||+..++.....
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 456778999999999999999999999999999999999998 7999999999999999999999955443211
Q ss_pred CCCCCC--eEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcc
Q psy12410 395 EETDGP--MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVT 472 (615)
Q Consensus 395 ~~~~~~--~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 472 (615)
....++ .+||++|||+||.|+...|..++...++.+..++||.....|..-|...++|||||||+|..++..+...+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 112234 599999999999999999999999999999999999999999888888899999999999999998876677
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhcC-----CCCcEEEEeccCCh---------------------HHHHHHH
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR-----PDRQTVMFSATFPR---------------------QMEALAR 526 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-----~~~q~l~~SAT~~~---------------------~~~~~~~ 526 (615)
+|..+.+|||||||+|+..|+...+..|+..+. ..+|+++||||++- .++.++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 899999999999999999999999999988875 46899999999852 2333443
Q ss_pred H--HcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEc
Q psy12410 527 R--ILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLP 604 (615)
Q Consensus 527 ~--~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lh 604 (615)
. +..+|.+|.......+...+....+.|+...|-.+|+.+|..+ +|++|||||++..+..|+.+|...+++.+.||
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 3 3356777777777777777777778888888888888888776 78999999999999999999999999999999
Q ss_pred CCCChhhh
Q psy12410 605 AGITRFIW 612 (615)
Q Consensus 605 g~~~~~eR 612 (615)
+.|.|..|
T Consensus 495 A~M~QKqR 502 (731)
T KOG0347|consen 495 ASMIQKQR 502 (731)
T ss_pred HHHHHHHH
Confidence 99999987
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-39 Score=346.65 Aligned_cols=281 Identities=27% Similarity=0.460 Sum_probs=248.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+.+|.+++|++.+.+.|...||..|+|+|.++|+.++.|+|++++||||||||++|++|++.++... .+++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5679999999999999999999999999999999999999999999999999999999999887432 34778999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
|+||++||.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||+.|..++.... ..+.++++|||||
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViDE 178 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILDE 178 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEec
Confidence 9999999999999999998888888999999998888888888889999999999999887643 5688999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh-hHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE-EQKMLKL 563 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l 563 (615)
||++++.+|...+..++..+++..|+|++|||+++.+..+...++.+|..+.+.........+.+.++.+.. ..+...+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777666666777887777664 3355555
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 259 ~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~ 308 (401)
T PTZ00424 259 CDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDL 308 (401)
T ss_pred HHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHH
Confidence 5555443 3568999999999999999999999999999999999999975
No 30
>KOG0337|consensus
Probab=100.00 E-value=5.9e-41 Score=328.08 Aligned_cols=282 Identities=32% Similarity=0.533 Sum_probs=262.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
.-.|..+||...+.++|.+.||..|||+|...||.|+.+++++..+.||||||.||++||+.++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45688999999999999999999999999999999999999999999999999999999999986542 45789999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
+.||++||.|+.+.++.+....+++.++++||....+++..+..++|||+|||++++.+...-. ..|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~---l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT---LTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee---ccccceeeeeehh
Confidence 9999999999999999999999999999999999999999999889999999999987665432 5689999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLL 564 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 564 (615)
||+++.|||.+++..++..++.++|+++||||+|..+..+++.-+.+|+.+.+.-.......++..+..+....|...|+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766777778888888899999999999
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
.++.......+++|||.|..+|+.+...|...|+.|..|+|.|++.-|.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk 301 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARK 301 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhh
Confidence 9999887777899999999999999999999999999999999999886
No 31
>KOG0327|consensus
Probab=100.00 E-value=3.2e-39 Score=314.51 Aligned_cols=279 Identities=27% Similarity=0.465 Sum_probs=256.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+.+|++++|++.|++.+...||++|+.+|+.||..+..|.|+++.+++|+|||.+|+++++.++-.. .....+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999999999999999887321 34577999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
++||++||.|+......+....++.+..+.||.....+...+.. +++|+|+||+++.+++.... .....+.++|+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlD 176 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLD 176 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeec
Confidence 99999999999999999999999999999999988866665554 58999999999999998652 556789999999
Q ss_pred cccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHH
Q psy12410 484 EADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKL 563 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 563 (615)
|||.|+..||..++..|+.+++++.|++++|||+|.++..+.+.|+.+|+.+.+...+.+...+.|+++.+..+.|+..|
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999888899988
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..+.. .....+||||+...+..|...|...|+.+.++||+|.|.+|+.
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~ 304 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDT 304 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhH
Confidence 88888 3567899999999999999999999999999999999999974
No 32
>KOG4284|consensus
Probab=100.00 E-value=4.3e-39 Score=328.91 Aligned_cols=287 Identities=28% Similarity=0.422 Sum_probs=255.3
Q ss_pred CCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCC
Q psy12410 318 GKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET 397 (615)
Q Consensus 318 ~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 397 (615)
+.-.|.-...|.+|-|...++..|+..+|..||++|..|||+++.+-|+|+++..|+|||++|.+.++..+.- ..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RS 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----cc
Confidence 3445666778999999999999999999999999999999999999999999999999999999888877632 25
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
..+++|||+|||++|.||...+.+++..+ |+++.++.||+........++. +.|+|+|||+|..++..+ ..+.+.
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~---~~n~s~ 167 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG---AMNMSH 167 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc---CCCccc
Confidence 67899999999999999999999999865 8999999999998888777776 899999999999999865 478899
Q ss_pred ccEEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC
Q psy12410 477 VTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD 555 (615)
Q Consensus 477 ~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~ 555 (615)
+.+|||||||.|++. .|...+..|++.++..+|+++||||.|..+..++..|+.+|..|...........|.|+++.+.
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 999999999999884 5999999999999999999999999999999999999999999988888888888999988765
Q ss_pred hh--------HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 556 EE--------QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 556 ~~--------~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.. .|+..|-.++..+ +-.+.||||+.+..|+.++++|...|+.|.+|.|.|+|.+|-.
T Consensus 248 s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 32 3556666666655 3457999999999999999999999999999999999999954
No 33
>KOG0332|consensus
Probab=100.00 E-value=1.9e-37 Score=299.14 Aligned_cols=284 Identities=26% Similarity=0.412 Sum_probs=246.6
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 321 CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 321 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
+...+++|.+|+|+++|++.|..++|..|+.+|..|+|.++.. +|+|.++..|+|||.+|.|.||..+--. ..
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~ 159 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VV 159 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----cc
Confidence 3456789999999999999999999999999999999999976 7999999999999999999999887322 34
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
.|.+|+|+|||+||.|+.+.+.+..+..++.+....-+.... .-..+ ..+|+|+|||.+.+++... ++..+..+.
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~kl--k~id~~kik 234 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKL--KCIDLEKIK 234 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHH--HhhChhhce
Confidence 789999999999999999999999888777776665554111 10111 1689999999999998863 357789999
Q ss_pred EEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-h
Q psy12410 479 YIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-E 556 (615)
Q Consensus 479 ~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~ 556 (615)
++|+||||.|++. ||..+-..|...++++.|+|+||||+...+..|+..++.++..+.+........+|+|+++.|. .
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 9999999998864 5999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 557 EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 557 ~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.+|+..|..++... .-|+.||||.|+..|..|+..|...|+.+.++||+|.-.+|+.+
T Consensus 315 ~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 315 DDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAI 372 (477)
T ss_pred hhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHH
Confidence 67888888866544 46789999999999999999999999999999999999999753
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-35 Score=330.79 Aligned_cols=270 Identities=20% Similarity=0.237 Sum_probs=207.5
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 332 GVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 332 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
.|++.|.+.|...||..||++|.++|+.++.|+|+|+++|||||||++|++|++..+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 388999999999999999999999999999999999999999999999999999998653 36799999999999
Q ss_pred HHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHh-cCCCcccCCCccEEEEcccccccc
Q psy12410 412 CMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAA-NSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 412 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
|.|++..++.+. ..++.+.++.|++.. .+...+..+++|||+||++|...+.. ...+...|+++.+|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 447888888887764 44456677799999999999754332 111123378999999999999875
Q ss_pred CCcHHHHHHHHHh-------cCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC--------
Q psy12410 491 MGFEPQVMRIIDN-------VRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-------- 555 (615)
Q Consensus 491 ~~~~~~~~~i~~~-------~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-------- 555 (615)
.|..++..++.. .+.++|+|+||||+++.. .++..+++.|+.+ +.............+....
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcccccccc
Confidence 367665555443 356789999999999875 4788888888654 3332222222222221111
Q ss_pred --------hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--------CCcEEEEcCCCChhhhhcC
Q psy12410 556 --------EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--------CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 556 --------~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--------g~~~~~lhg~~~~~eR~~v 615 (615)
...+...+..++. .+.++||||+|+..|+.|+..|... +..+..+||++.+.+|..+
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 1234444445544 3569999999999999999998753 6789999999999999753
No 35
>KOG0344|consensus
Probab=100.00 E-value=2.9e-35 Score=301.07 Aligned_cols=309 Identities=29% Similarity=0.431 Sum_probs=260.6
Q ss_pred HHHHHHhhhcCeEecCCCCCCccccccc----cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhH
Q psy12410 303 EVEKYKEELEGIRVKGKGCPRPIKTWAQ----CGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTV 378 (615)
Q Consensus 303 ~~~~~r~~~~~i~~~~~~~p~~~~~~~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~ 378 (615)
.....|..+. +.+.|..+|.|+.+|.+ +.+...+++++...+|..|+|+|.+|+|.++.+++++.|||||||||+
T Consensus 110 ~~~~~Rk~~k-~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtl 188 (593)
T KOG0344|consen 110 KLLGIRKSNK-INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTL 188 (593)
T ss_pred ccccchhcce-eeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchh
Confidence 3444566665 99999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh--hhcCcEEEEEEcCCChhHHH-HHHhcCCcEEEE
Q psy12410 379 AFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT--KSLGLRVVCVYGGTGISEQI-SELKRGAEIIVC 455 (615)
Q Consensus 379 ~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~l~~~~~Iiv~ 455 (615)
+|++|++.++..........|-+++||.||++||.|++.++.++. ...++.+..+.......... ......++|+|.
T Consensus 189 af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 189 AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 999999999977654444568899999999999999999999998 65556555544332211111 111223899999
Q ss_pred ChHHHHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCCCE
Q psy12410 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNKPI 533 (615)
Q Consensus 456 Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~p~ 533 (615)
||-++..++.... ...++..|.++|+||||+++.. .|..++..|+..+ .++..+-+||||++-.+++++.....+++
T Consensus 269 TP~ri~~~~~~~~-~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~ 347 (593)
T KOG0344|consen 269 TPMRIVGLLGLGK-LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK 347 (593)
T ss_pred CHHHHHHHhcCCC-ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce
Confidence 9999999887642 1257899999999999999988 8999999998766 46777888999999999999999999999
Q ss_pred EEEECCcccccCCeEEEEEecC-hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHh-hcCCCcEEEEcCCCChhh
Q psy12410 534 EIQVGGRSVVCKEVEQHVIVLD-EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHS-MDPCLEFLPLPAGITRFI 611 (615)
Q Consensus 534 ~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L-~~~g~~~~~lhg~~~~~e 611 (615)
.+.++-.......|.|..++|. +..|+..+.+++... ...++|||+.+.+.|..|+..| .-.++.+..|||+.+|.+
T Consensus 348 ~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 348 RVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQ 426 (593)
T ss_pred eEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhH
Confidence 9999988888889999888876 566787888887765 4568999999999999999999 777999999999999999
Q ss_pred hhc
Q psy12410 612 WQW 614 (615)
Q Consensus 612 R~~ 614 (615)
|+.
T Consensus 427 rde 429 (593)
T KOG0344|consen 427 RDE 429 (593)
T ss_pred HHH
Confidence 975
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.2e-33 Score=307.06 Aligned_cols=258 Identities=19% Similarity=0.208 Sum_probs=198.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCC-CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE-EcCcHHHHHHHHHHHHH
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGR-DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII-MSPTRELCMQIGKEAKK 421 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li-l~Ptr~La~q~~~~~~~ 421 (615)
.||. |||||.++|+.++.|+ ++++++|||||||.+|.++++.. .. ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4786 9999999999999998 57778999999999776544422 11 123455555 77999999999999999
Q ss_pred hhhhc-----------------------CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHH-hcCC-----Ccc
Q psy12410 422 FTKSL-----------------------GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLA-ANSG-----RVT 472 (615)
Q Consensus 422 ~~~~~-----------------------~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~-~~~~-----~~~ 472 (615)
+++.+ ++.+.+++||.+...++..+..+++|||+|++.+..-+. .+.+ ..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 98865 488999999999999999999999999999654422111 0000 001
Q ss_pred ---cCCCccEEEEccccccccCCcHHHHHHHHHhc--CCC---CcEEEEeccCChHHHHHHHHHcCCCEEEEECCccccc
Q psy12410 473 ---NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV--RPD---RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVC 544 (615)
Q Consensus 473 ---~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~~---~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 544 (615)
.|..+.+||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.+++.+.+.......
T Consensus 165 ~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a 242 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAA 242 (844)
T ss_pred hhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccc
Confidence 26889999999999 6799999999999975 332 6999999999998888888888888777666555555
Q ss_pred CCeEEEEEecChhHHHHHHHHHHhc--cCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 545 KEVEQHVIVLDEEQKMLKLLELLGI--YQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 545 ~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
..+.+++ .+....+...++..+.. ....+++||||||+..|+.|+..|.+.|+ ..|||+|+|.+|+
T Consensus 243 ~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 243 KKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred cceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 6666653 34444444333333221 12457899999999999999999999887 8999999999998
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-32 Score=306.39 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=200.6
Q ss_pred cccc--cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 327 TWAQ--CGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 327 ~~~~--~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
.|.. +.....+...+.. .|+..|+|+|.++|++++.|+|+|+++|||+|||+||++|++.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4654 4445556666554 59999999999999999999999999999999999999999853 45799
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHh------cCCcEEEEChHHHHH--HHHhcCCCcccCC
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELK------RGAEIIVCTPGRMID--MLAANSGRVTNLR 475 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~Iiv~Tp~~l~~--~l~~~~~~~~~l~ 475 (615)
||+|+++|+.+++..+.. .++.+..+.|+....++...+. ..++|||+||++|.. .+......+....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999866555444 3889999999988776654433 248999999999852 1221111112235
Q ss_pred CccEEEEccccccccCC--cHHHHHHH--HHhcCCCCcEEEEeccCChHHHHHHHHHcC--CCEEEEECCcccccCCeEE
Q psy12410 476 RVTYIVLDEADRMFDMG--FEPQVMRI--IDNVRPDRQTVMFSATFPRQMEALARRILN--KPIEIQVGGRSVVCKEVEQ 549 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~--~~~~~~~i--~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~--~p~~i~~~~~~~~~~~i~~ 549 (615)
.+.+|||||||++++|| |.+.+..+ +....+.+|+++||||+++.+...+...+. +++.+ . ..+...++.+
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r--~Sf~RpNL~y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-R--QSFNRPNLWY 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-e--cccCccceEE
Confidence 58899999999999998 77777654 445557889999999999988876666654 33322 1 2333445544
Q ss_pred EEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 550 HVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 550 ~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.++. ........+..++........+||||+++..|+.|+..|...|+.+..|||+|++.+|..+
T Consensus 658 ~Vv~-k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 658 SVVP-KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred EEec-cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHH
Confidence 4332 2222234566666554445689999999999999999999999999999999999999753
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-33 Score=314.46 Aligned_cols=269 Identities=23% Similarity=0.337 Sum_probs=201.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.|.+++|++.+++.+...|+..|+|+|.++++. +++|+|+|++||||||||++|.++++.++. .+.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 578899999999999999999999999999998 779999999999999999999999999984 36689999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
+||++||.|++..++.+.. ++++++.++|+...... ....++|+||||+++..++.... ..+..+++||||||
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~ 146 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEV 146 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECc
Confidence 9999999999999998754 58999999998754432 22348999999999988887532 34788999999999
Q ss_pred cccccCCcHHHHHHHHHhc---CCCCcEEEEeccCChHHHHHHHHHcCCC-------EEEEE--C-CcccccCCeEEEEE
Q psy12410 486 DRMFDMGFEPQVMRIIDNV---RPDRQTVMFSATFPRQMEALARRILNKP-------IEIQV--G-GRSVVCKEVEQHVI 552 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~---~~~~q~l~~SAT~~~~~~~~~~~~~~~p-------~~i~~--~-~~~~~~~~i~~~~~ 552 (615)
|.+.+.+++..+..++..+ .++.|+|++|||+++. ..++.++.... +.+.. . ........ .+..+
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~ 224 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREV 224 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccC
Confidence 9999888888887776654 5789999999999863 55665543221 11110 0 00000000 01111
Q ss_pred ecCh-hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCC----------------------------------
Q psy12410 553 VLDE-EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPC---------------------------------- 597 (615)
Q Consensus 553 ~~~~-~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g---------------------------------- 597 (615)
.... ......+... ...++++||||+++..|+.++..|....
T Consensus 225 ~~~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 225 EVPSKDDTLNLVLDT---LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred CCccchHHHHHHHHH---HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 1111 1122222232 3356799999999999999988886431
Q ss_pred --CcEEEEcCCCChhhhhcC
Q psy12410 598 --LEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 598 --~~~~~lhg~~~~~eR~~v 615 (615)
+.+..+||+|++.+|+.|
T Consensus 302 l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred HHhCEEeecCCCCHHHHHHH
Confidence 357899999999999754
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.6e-32 Score=308.63 Aligned_cols=269 Identities=21% Similarity=0.267 Sum_probs=204.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.|.++++++.+.+.|...|+..|+|+|.++|+. +++|+|+|+++|||||||++|.+|++.+++. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577899999999999999999999999999986 7899999999999999999999999998763 26789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
+|+++||.|++..+..+. .+++.+..++|+...... ....++|+|+||+++..++.... ..+.++++|||||+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~ 147 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEI 147 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCc
Confidence 999999999999998864 468999999998765432 22458999999999988876542 44789999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCccccc--CCeEEEEEecChh------
Q psy12410 486 DRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVC--KEVEQHVIVLDEE------ 557 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~--~~i~~~~~~~~~~------ 557 (615)
|.+.+.++...+..++..+....|+|++|||+++. ..++.++ +...... ....... ..+.+........
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl-~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWL-NAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHh-CCccccC-CCCCCcceeeEecCCeeeccCcchhcch
Confidence 99998889999999999998899999999999863 6666654 3322111 1011100 0011111111111
Q ss_pred HH-HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC---------------------------------CCcEEEE
Q psy12410 558 QK-MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP---------------------------------CLEFLPL 603 (615)
Q Consensus 558 ~k-~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~---------------------------------g~~~~~l 603 (615)
.. ...+...+. .++++||||+|+..|+.++..|... .+.|.++
T Consensus 225 ~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 225 NSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFH 301 (720)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEe
Confidence 11 112233332 4678999999999998887666321 2358999
Q ss_pred cCCCChhhhhcC
Q psy12410 604 PAGITRFIWQWA 615 (615)
Q Consensus 604 hg~~~~~eR~~v 615 (615)
||+|++.+|..|
T Consensus 302 Hagl~~~eR~~v 313 (720)
T PRK00254 302 HAGLGRTERVLI 313 (720)
T ss_pred CCCCCHHHHHHH
Confidence 999999999754
No 40
>KOG0329|consensus
Probab=100.00 E-value=1.6e-33 Score=258.68 Aligned_cols=253 Identities=30% Similarity=0.510 Sum_probs=224.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
.+.|.++-|+++|++++...||+.|+..|.++||...-|.|++++|..|.|||.+|.+.-|+.+--- .+..-+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEE
Confidence 3457888899999999999999999999999999999999999999999999999999999886221 23567999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
+|+||+||.||.++..+|.+.+ ++++.+.|||.++......+++.++|+|+|||+++.+..... .+|+++..+|+|
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~---l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS---LNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc---Cchhhcceeehh
Confidence 9999999999999999998876 589999999999999888888889999999999999988653 789999999999
Q ss_pred ccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcc-cccCCeEEEEEecChhHHHH
Q psy12410 484 EADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRS-VVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 484 Eah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~ 561 (615)
|||.|+. ...+..+..|+...+.+.|+++||||++.++...++.|+.+|+.|.+.+.. .+...++|+|+.+.+..|..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 9998873 345788999999999999999999999999999999999999999887654 56788999999999999998
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchH
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENA 586 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a 586 (615)
+|..+|..+.. .+++||+.+....
T Consensus 273 kl~dLLd~LeF-NQVvIFvKsv~Rl 296 (387)
T KOG0329|consen 273 KLNDLLDVLEF-NQVVIFVKSVQRL 296 (387)
T ss_pred hhhhhhhhhhh-cceeEeeehhhhh
Confidence 98888887654 4799999998763
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-31 Score=306.29 Aligned_cols=279 Identities=21% Similarity=0.258 Sum_probs=196.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCC-CCCCCeEEEEcCcHHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE-ETDGPMAIIMSPTREL 411 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~~lil~Ptr~L 411 (615)
|++.+.+.+.. +|..|||+|.+||+.++.|+|+|++||||||||++|++|++.+++...... ..+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 788999999999999999999999999999999999999999987543211 1347889999999999
Q ss_pred HHHHHHHHHH-------hh----hhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccE
Q psy12410 412 CMQIGKEAKK-------FT----KSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479 (615)
Q Consensus 412 a~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 479 (615)
|.|++..+.. ++ ..+ ++.+.+++|++........+..+++|+||||++|..++.... ....|.++.+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~-~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK-FREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh-HHHHHhcCCE
Confidence 9999876553 22 122 678899999998888777777789999999999987775321 1135789999
Q ss_pred EEEccccccccCCcHHHHHHHHH----hcCCCCcEEEEeccCChHHHHHHHHHcCC-------CEEEEECCcccccCCeE
Q psy12410 480 IVLDEADRMFDMGFEPQVMRIID----NVRPDRQTVMFSATFPRQMEALARRILNK-------PIEIQVGGRSVVCKEVE 548 (615)
Q Consensus 480 lVvDEah~~~~~~~~~~~~~i~~----~~~~~~q~l~~SAT~~~~~~~~~~~~~~~-------p~~i~~~~~~~~~~~i~ 548 (615)
|||||||.+++..+..++..++. ...+..|+|++|||+++. ..++.++... ++.+... .......+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~-~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDA-RFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEcc-CCCccceEE
Confidence 99999999997766655544433 334678999999999863 4455444321 2222211 111111111
Q ss_pred EEE-----EecChhHHHHHHHHHHhc-cCCCCcEEEEeCCcchHHHHHHHhhcC------CCcEEEEcCCCChhhhhcC
Q psy12410 549 QHV-----IVLDEEQKMLKLLELLGI-YQDQGSVIVFVDKQENADSLLFHSMDP------CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 549 ~~~-----~~~~~~~k~~~l~~~l~~-~~~~~~~LIF~~s~~~a~~l~~~L~~~------g~~~~~lhg~~~~~eR~~v 615 (615)
... ...........+...|.. ....+++||||||+..|+.++..|... +..+.++||+|++.+|..|
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 100 001111111222222222 223568999999999999999999862 4789999999999999753
No 42
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.3e-31 Score=307.84 Aligned_cols=248 Identities=23% Similarity=0.321 Sum_probs=198.8
Q ss_pred HHHHHC-CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 339 DALKKQ-NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 339 ~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
+.+... |+ .|+++|..++|.++.|+|++++||||+|||+ |+++++.++. ..++++|||+||++||.|++.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-------~~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-------KKGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-------hcCCeEEEEeccHHHHHHHHH
Confidence 344444 55 8999999999999999999999999999996 4555554442 237899999999999999999
Q ss_pred HHHHhhhhcCcEEEEEEcCCCh-----hHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc-
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGI-----SEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD- 490 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~- 490 (615)
.++.++...++.+.+++|+... ..+...+.. +++|+|+||++|.+.+.. ..+..+++|||||||+|++
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhc
Confidence 9999999888888888877642 333444554 489999999999988762 4456799999999999986
Q ss_pred ----------CCcH-HHHHHHHHhcCC------------------------CCcEEEEeccCChH-HHHHHHHHcCCCEE
Q psy12410 491 ----------MGFE-PQVMRIIDNVRP------------------------DRQTVMFSATFPRQ-MEALARRILNKPIE 534 (615)
Q Consensus 491 ----------~~~~-~~~~~i~~~~~~------------------------~~q~l~~SAT~~~~-~~~~~~~~~~~p~~ 534 (615)
+||. ..+..++..++. .+|+++||||+++. +.. .++.+++.
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 6784 678888777764 68999999999874 332 34556666
Q ss_pred EEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcch---HHHHHHHhhcCCCcEEEEcCCC
Q psy12410 535 IQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQEN---ADSLLFHSMDPCLEFLPLPAGI 607 (615)
Q Consensus 535 i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~---a~~l~~~L~~~g~~~~~lhg~~ 607 (615)
+.++.......+|.+.++.+. .+...|..++.... ..+||||++... |+.|++.|...|++|..+||+|
T Consensus 294 ~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 294 FEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred EEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 777776666778888887765 56667778877653 479999999887 9999999999999999999999
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-31 Score=285.67 Aligned_cols=250 Identities=19% Similarity=0.251 Sum_probs=189.2
Q ss_pred HCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 343 KQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 343 ~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 359999999999999999999999999999999999999999842 456999999999999998877654
Q ss_pred hhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHH---HHhcCCCcccCCCccEEEEccccccccCC--c
Q psy12410 423 TKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDM---LAANSGRVTNLRRVTYIVLDEADRMFDMG--F 493 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~---l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~ 493 (615)
++.+..+.++....+.. ..+..+ .+|+|+||+.+... +.. +..+..+.+|||||||++++|| |
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~----l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT----LEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH----HHhcCCcCEEEEeCCcccCcccccc
Confidence 78888888877655332 233333 89999999997532 221 1146789999999999999887 6
Q ss_pred HHHHHHH--HHhcCCCCcEEEEeccCChHHHHHHHHHc--CCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhc
Q psy12410 494 EPQVMRI--IDNVRPDRQTVMFSATFPRQMEALARRIL--NKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGI 569 (615)
Q Consensus 494 ~~~~~~i--~~~~~~~~q~l~~SAT~~~~~~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 569 (615)
.+.+..+ +....++.|+++||||+++.+...+...+ .+|..+.. .....++...+.... ......+..++..
T Consensus 147 r~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~~~~-~~~~~~l~~~l~~ 222 (470)
T TIGR00614 147 RPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVRRKT-PKILEDLLRFIRK 222 (470)
T ss_pred HHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEEeCC-ccHHHHHHHHHHH
Confidence 6666554 33334688999999999998776666554 34543322 222344444333222 2344556666654
Q ss_pred cCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 570 YQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 570 ~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
...+..+||||+++..|+.|+..|...|+.+..+||+|++.+|..+
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 4455677999999999999999999999999999999999999753
No 44
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.7e-31 Score=254.42 Aligned_cols=202 Identities=50% Similarity=0.898 Sum_probs=184.3
Q ss_pred ccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 328 WAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 328 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.++++++.+.+.|...|+..|+++|.++++.++.|+++++++|||+|||++|++|++.++.... ..+++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987642 135789999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccc
Q psy12410 408 TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADR 487 (615)
Q Consensus 408 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~ 487 (615)
|++|+.|+...+..+....++.+.+++|+.........+..+++|+||||+.|..++.... ..+..+.+|||||||.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADR 154 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHH
Confidence 9999999999999998888899999999998877766666679999999999999888653 5678899999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEE
Q psy12410 488 MFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEI 535 (615)
Q Consensus 488 ~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i 535 (615)
+.+.++...+..++..++..+|++++|||+++.+..++..++.+|+.|
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 998889999999999999999999999999999999999999999865
No 45
>KOG0350|consensus
Probab=99.98 E-value=6.4e-32 Score=269.99 Aligned_cols=273 Identities=26% Similarity=0.436 Sum_probs=219.3
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHH---------cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 334 SKKILDALKKQNYEKPTPIQAQAIPAIM---------SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 334 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~---------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
...+.+++.++++....|+|..++|.++ ..+|+.+.||||||||++|.+||++.+...+ .+.-++||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEE
Confidence 3456677899999999999999999996 2579999999999999999999999886643 34578999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-----CcEEEEChHHHHHHHHhcCCCcccCCCccE
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-----AEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 479 (615)
|+||++|+.|++..|..++...|+.|+.+.|..+.......|.+. .+|+|+|||+|++.|... +.++|.++.|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 999999999999999999999999999888888887777777653 499999999999999853 3478999999
Q ss_pred EEEccccccccCCcH---HHHHHHHHhc-------------------------------CCCCcEEEEeccCChHHHHHH
Q psy12410 480 IVLDEADRMFDMGFE---PQVMRIIDNV-------------------------------RPDRQTVMFSATFPRQMEALA 525 (615)
Q Consensus 480 lVvDEah~~~~~~~~---~~~~~i~~~~-------------------------------~~~~q~l~~SAT~~~~~~~~~ 525 (615)
+||||||+|++..|. +.++.++... .+..+.++||||+...-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 999999999975433 3333332221 122457889999988878888
Q ss_pred HHHcCCCEEEEEC----CcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhh----cCC
Q psy12410 526 RRILNKPIEIQVG----GRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSM----DPC 597 (615)
Q Consensus 526 ~~~~~~p~~i~~~----~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~----~~g 597 (615)
..-++.|-.+.+. .....+..+.+..+.++...+-..+..++..+ ...++|+|+++...+..|+..|. ...
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 8888888433333 34445667788888788777777888888765 35589999999999999999887 346
Q ss_pred CcEEEEcCCCChhhhh
Q psy12410 598 LEFLPLPAGITRFIWQ 613 (615)
Q Consensus 598 ~~~~~lhg~~~~~eR~ 613 (615)
+++-.+.|++++..|.
T Consensus 458 ~~~s~~t~~l~~k~r~ 473 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRY 473 (620)
T ss_pred chhhhhhhhhhHHHHH
Confidence 7788899999988875
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=1.1e-30 Score=294.04 Aligned_cols=267 Identities=21% Similarity=0.290 Sum_probs=198.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|.+++|++.+++.+...+|. |+++|.++++.+.+++|+++++|||||||++|.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477899999999999998886 999999999999999999999999999999999999988742 56899999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
|+++||.|+++.+.++. ..|+.+..++|+...... ....++|+|+||+++..++.... ..+.++++|||||||
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH 145 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP---YIINDVGLIVADEIH 145 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh---hHHhhcCEEEEecch
Confidence 99999999999999864 468888888887654332 22458999999999988876532 457899999999999
Q ss_pred ccccCCcHHHHHHHHH---hcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEE-----ecChh-
Q psy12410 487 RMFDMGFEPQVMRIID---NVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI-----VLDEE- 557 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~---~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~-----~~~~~- 557 (615)
.+.+.++...+..++. .++++.|+|++|||+++. ..++.++....+.. ...+..+...+. .++..
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~~~-----~~r~vpl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLIKS-----NFRPVPLKLGILYRKRLILDGYE 219 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCccCC-----CCCCCCeEEEEEecCeeeecccc
Confidence 9988777777766654 456789999999999864 56666543322110 011111111111 11111
Q ss_pred HHHHHHHHHHhc-cCCCCcEEEEeCCcchHHHHHHHhhcCC-------------------------CcEEEEcCCCChhh
Q psy12410 558 QKMLKLLELLGI-YQDQGSVIVFVDKQENADSLLFHSMDPC-------------------------LEFLPLPAGITRFI 611 (615)
Q Consensus 558 ~k~~~l~~~l~~-~~~~~~~LIF~~s~~~a~~l~~~L~~~g-------------------------~~~~~lhg~~~~~e 611 (615)
.....+..++.. ...++++||||+++..|+.++..|.... ..+..+||+|++.+
T Consensus 220 ~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 220 RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHH
Confidence 011112233332 3356799999999999999999886531 23778999999999
Q ss_pred hhcC
Q psy12410 612 WQWA 615 (615)
Q Consensus 612 R~~v 615 (615)
|..|
T Consensus 300 R~~v 303 (674)
T PRK01172 300 RRFI 303 (674)
T ss_pred HHHH
Confidence 9753
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1e-29 Score=287.65 Aligned_cols=256 Identities=17% Similarity=0.150 Sum_probs=194.8
Q ss_pred CCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 333 VSKKILDALKKQ-NYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 333 l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.+..+...+... +| .||++|.+||+.++.+ +|++++|+||+|||++|+++++..+. ++++++||
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeEEEE
Confidence 345566666554 66 6999999999999875 79999999999999999999998873 36789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
+||++||.|+++.+++++..+++++..++|+....+. ...+..| ++|||+||..+ .. ...|.++.+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~----~v~f~~L~llV 578 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK----DVKFKDLGLLI 578 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC----CCCcccCCEEE
Confidence 9999999999999999999889999999988765443 3445554 89999999432 22 25688999999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHH
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 561 (615)
|||+|++. ......+..+.+++|+|+||||+++....++...+.++..+...... ...|.+++.......-..
T Consensus 579 IDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~ 651 (926)
T TIGR00580 579 IDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVRE 651 (926)
T ss_pred eecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHH
Confidence 99999853 33445566777889999999999887666666566677655543322 234555554333221112
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhhhcC
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~v 615 (615)
. ++.....+++++||||+++.++.++..|.+. +++|..+||+|++.+|+.+
T Consensus 652 ~---i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 652 A---IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred H---HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 2 2233335679999999999999999999874 8899999999999999753
No 48
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=9.5e-30 Score=294.95 Aligned_cols=253 Identities=20% Similarity=0.308 Sum_probs=194.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 336 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
.+.+.+.......|+++|..+++.++.|++++++||||+|||+ |++|++.++.. .++++|||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 3445555555568999999999999999999999999999997 66677666532 378999999999999999
Q ss_pred HHHHHHhhhhcCcEEE---EEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc
Q psy12410 416 GKEAKKFTKSLGLRVV---CVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488 (615)
Q Consensus 416 ~~~~~~~~~~~~~~~~---~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~ 488 (615)
+..+..++...++.+. +++|+.+..++ ...+.++ ++|||+||++|...+... .. .+++|||||||+|
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVDAL 211 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChHhh
Confidence 9999999988776543 46788876654 3344544 999999999998877541 11 7999999999999
Q ss_pred cc-----------CCcHHH-HHHHH----------------------HhcCCCCc--EEEEecc-CChHHHHHHHHHcCC
Q psy12410 489 FD-----------MGFEPQ-VMRII----------------------DNVRPDRQ--TVMFSAT-FPRQMEALARRILNK 531 (615)
Q Consensus 489 ~~-----------~~~~~~-~~~i~----------------------~~~~~~~q--~l~~SAT-~~~~~~~~~~~~~~~ 531 (615)
++ +||..+ +..++ ..++..+| +++|||| +|..+. ..++.+
T Consensus 212 L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ 288 (1171)
T TIGR01054 212 LKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRE 288 (1171)
T ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHccc
Confidence 97 678764 44433 23444555 5678999 454432 245667
Q ss_pred CEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCc---chHHHHHHHhhcCCCcEEEEcCCCC
Q psy12410 532 PIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQ---ENADSLLFHSMDPCLEFLPLPAGIT 608 (615)
Q Consensus 532 p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~---~~a~~l~~~L~~~g~~~~~lhg~~~ 608 (615)
++.+.++.......+|.+.++.+.. +...|..++... +..+||||++. +.|+.|+..|.+.|++|..+||+|+
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 7777887777777788888876554 234566777665 35799999999 9999999999999999999999996
Q ss_pred h
Q psy12410 609 R 609 (615)
Q Consensus 609 ~ 609 (615)
+
T Consensus 365 ~ 365 (1171)
T TIGR01054 365 K 365 (1171)
T ss_pred H
Confidence 4
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=279.99 Aligned_cols=272 Identities=26% Similarity=0.328 Sum_probs=213.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
|++.+.+.+... |..|||.|.+|||.|.+|+|+|++||||||||+++++|+++.+++........+..+|||.|.++|+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 688899998888 9999999999999999999999999999999999999999999887422334578999999999999
Q ss_pred HHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC
Q psy12410 413 MQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG 492 (615)
Q Consensus 413 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~ 492 (615)
+.+...+..+...+|+.+.+-+|+++..+....+.+.++|+|+||+.|.-++... .....|.++.+|||||+|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999988888889999999999997777643 223458999999999999887655
Q ss_pred cHHHH----HHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCC--CEEEEECCcccccCCeEEEEEecCh---------h
Q psy12410 493 FEPQV----MRIIDNVRPDRQTVMFSATFPRQMEALARRILNK--PIEIQVGGRSVVCKEVEQHVIVLDE---------E 557 (615)
Q Consensus 493 ~~~~~----~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~~~~---------~ 557 (615)
.+.++ ..+..... +.|.|++|||..+. ..+++++... +..|...... ..+...++.... .
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccchhH
Confidence 44444 33333334 89999999999854 5566666554 4444433221 122222222111 1
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCC-CcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPC-LEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g-~~~~~lhg~~~~~eR~~ 614 (615)
.....+.+++.. ...+|||+||+..|+.|+..|++.+ ..+..-||.++...|..
T Consensus 241 ~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 241 ALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLE 295 (814)
T ss_pred HHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHH
Confidence 122333444443 4589999999999999999999876 89999999999998864
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.5e-29 Score=279.88 Aligned_cols=258 Identities=17% Similarity=0.252 Sum_probs=189.9
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 334 SKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 334 ~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
.......|+. .||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3344444544 59999999999999999999999999999999999999999853 34699999999999
Q ss_pred HHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc
Q psy12410 413 MQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488 (615)
Q Consensus 413 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~ 488 (615)
.|++..+..+ ++.+.++.++........ .+..+ .+|+|+||++|....... ......+.+|||||||++
T Consensus 79 ~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 79 KDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeCcccc
Confidence 9998877764 788888888776655432 23333 789999999986321111 123457899999999999
Q ss_pred ccCC--cHHHHHHH--HHhcCCCCcEEEEeccCChHHHHHHHHHc--CCCEEEEECCcccccCCeEEEEEecChhHHHHH
Q psy12410 489 FDMG--FEPQVMRI--IDNVRPDRQTVMFSATFPRQMEALARRIL--NKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLK 562 (615)
Q Consensus 489 ~~~~--~~~~~~~i--~~~~~~~~q~l~~SAT~~~~~~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 562 (615)
++|| |.+.+..+ +....++.++|+||||+++.+...+...+ .+|.... . .....++...+ +........
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~--~~~r~nl~~~v--~~~~~~~~~ 226 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIRYTL--VEKFKPLDQ 226 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-C--CCCCCcceeee--eeccchHHH
Confidence 9887 66665544 23334688999999999988765554443 4554322 2 22233443332 222333445
Q ss_pred HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 563 LLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 563 l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
++.++... .++++||||+|+..|+.++..|...|+.+..+||+|++.+|..+
T Consensus 227 l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i 278 (607)
T PRK11057 227 LMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADV 278 (607)
T ss_pred HHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHH
Confidence 55555443 45689999999999999999999999999999999999999753
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=3.4e-29 Score=289.32 Aligned_cols=254 Identities=17% Similarity=0.108 Sum_probs=196.5
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 335 KKILDAL-KKQNYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 335 ~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
..+...+ ...+| .||++|.+||+.++.+ +|+|++|+||+|||.+|+.+++..+ ..++++|||+|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--------~~g~qvlvLvP 657 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------ENHKQVAVLVP 657 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--------HcCCeEEEEeC
Confidence 3444444 45566 8999999999999987 8999999999999999998888765 24788999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHH---hc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 408 TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL---KR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 408 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
|++||.|++..+.+++..+++.+.+++|+.+..++...+ .. +++|||+||+.|. . ...+.++++||||
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~----~v~~~~L~lLVID 729 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S----DVKWKDLGLLIVD 729 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C----CCCHhhCCEEEEe
Confidence 999999999999998887888999999988877765443 33 4899999996442 1 1457889999999
Q ss_pred cccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHH
Q psy12410 484 EADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKL 563 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 563 (615)
|+|++. +. ....+..+++++|+|+||||+++....++...+.++..+...... ...+.+.+.........
T Consensus 730 EahrfG---~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k--- 799 (1147)
T PRK10689 730 EEHRFG---VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVR--- 799 (1147)
T ss_pred chhhcc---hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHH---
Confidence 999963 22 244567778899999999999888888888888888777654332 23455554443322111
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhhhcC
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~v 615 (615)
..++..+..+++++||||++..++.++..|.+. ++.+.++||+|++.+|+.+
T Consensus 800 ~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 (1147)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHH
Confidence 222333334679999999999999999999886 7899999999999999763
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=3.7e-29 Score=295.32 Aligned_cols=252 Identities=18% Similarity=0.232 Sum_probs=197.9
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH
Q psy12410 336 KILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ 414 (615)
Q Consensus 336 ~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 414 (615)
.+.+.+.+ .|| .|+++|.++|+.++.|+|++++||||+|||++++++++... ..++++|||+||++||.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHH
Confidence 34455665 688 69999999999999999999999999999997666666543 236789999999999999
Q ss_pred HHHHHHHhhhhc--CcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc
Q psy12410 415 IGKEAKKFTKSL--GLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488 (615)
Q Consensus 415 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~ 488 (615)
++..+..++..+ ++.+.+++|+.+..++. ..+..| ++|||+||+.|...+... . ...+++|||||||+|
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceec
Confidence 999999998875 46778888998877653 345555 899999999998776532 1 267899999999999
Q ss_pred cc-----------CCcHHHHHH----HHH----------------------hcCCCCc-EEEEeccCChHHHHHHHHHcC
Q psy12410 489 FD-----------MGFEPQVMR----IID----------------------NVRPDRQ-TVMFSATFPRQMEALARRILN 530 (615)
Q Consensus 489 ~~-----------~~~~~~~~~----i~~----------------------~~~~~~q-~l~~SAT~~~~~~~~~~~~~~ 530 (615)
+. +||.+.+.. |+. .++...| ++++|||+++. .....++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhh
Confidence 86 588887764 332 2344556 67799999864 22234567
Q ss_pred CCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcch---HHHHHHHhhcCCCcEEEEcCC
Q psy12410 531 KPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQEN---ADSLLFHSMDPCLEFLPLPAG 606 (615)
Q Consensus 531 ~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~---a~~l~~~L~~~g~~~~~lhg~ 606 (615)
+++.+.++.......++.+.++.+....+ ..|+.++... +..+||||++... |+.|++.|...|++|..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 88888888777677788888887765555 4677777765 3579999999875 599999999999999999997
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=2e-29 Score=279.82 Aligned_cols=248 Identities=19% Similarity=0.273 Sum_probs=189.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.||..|+|+|.++|++++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|++..+..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 69999999999999999999999999999999999999999843 346899999999999998887764
Q ss_pred hhcCcEEEEEEcCCChhHHHH---HHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC--cHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQIS---ELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEPQV 497 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~ 497 (615)
|+.+..+.++....+... .+.. ..+|+++||++|....... ......+++|||||||++..|| |.+.+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 788888888877665432 2333 4899999999986432221 1345689999999999999877 77766
Q ss_pred HHHHHh--cCCCCcEEEEeccCChHHHHHHHHHcC--CCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCC
Q psy12410 498 MRIIDN--VRPDRQTVMFSATFPRQMEALARRILN--KPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQ 573 (615)
Q Consensus 498 ~~i~~~--~~~~~q~l~~SAT~~~~~~~~~~~~~~--~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 573 (615)
..+... .-+..++|++|||+++.+...+..++. ++..+. . .....++...+. ....+...+..++.... +
T Consensus 151 ~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~~~v~--~~~~~~~~l~~~l~~~~-~ 224 (591)
T TIGR01389 151 QRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLRFSVV--KKNNKQKFLLDYLKKHR-G 224 (591)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcEEEEE--eCCCHHHHHHHHHHhcC-C
Confidence 655332 234566999999999988776666664 333222 1 222344444332 33345566777776543 5
Q ss_pred CcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 574 GSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 574 ~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
.++||||+++..|+.|+..|...|+++..+||+|+..+|+.+
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i 266 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAEN 266 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHH
Confidence 689999999999999999999999999999999999999753
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=8.2e-29 Score=251.33 Aligned_cols=272 Identities=23% Similarity=0.261 Sum_probs=219.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
...+|.+++.+...|...|++.+.|+|.-++.. ++.|.|++++++|+||||++.-++-+..++. .|.+.|||
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 356789999999999999999999999999988 6799999999999999999999888887764 37899999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH----HHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS----ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
||..+||+|-+..|+.-...+++.+.+-.|-.-...... .-...+||||+|++.+-.+|..+ ..+.+|..||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVV 343 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVV 343 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEE
Confidence 999999999999999988889998877776443222211 11123899999999998888865 5689999999
Q ss_pred EccccccccCC---cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-hh
Q psy12410 482 LDEADRMFDMG---FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-EE 557 (615)
Q Consensus 482 vDEah~~~~~~---~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~ 557 (615)
|||+|.+-+.. ....+..-+..+-+..|+|.+|||..+. .+++..+..+++... ..+-.+..+++++. ..
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCch
Confidence 99999877644 3445555566777899999999999876 668887766655322 12234666777776 67
Q ss_pred HHHHHHHHHHhcc-------CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 558 QKMLKLLELLGIY-------QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 558 ~k~~~l~~~l~~~-------~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+|+..+..+...- ...|+||||++++..|..|+..|...|+++..+|+||++.+|+.|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence 8887777766522 225799999999999999999999999999999999999999754
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=4.1e-28 Score=271.30 Aligned_cols=255 Identities=19% Similarity=0.165 Sum_probs=183.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 335 KKILDALKKQNYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 335 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
..+++.+.......||++|.+||+.|..+ .++|++|+||||||++|++|++..+ .+|.++|||+||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--------~~g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--------EAGYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--------HcCCeEEEEecc
Confidence 45555555443448999999999999876 4899999999999999999999887 347899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH---HHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 409 RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE---QISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 409 r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
++||.|+++.+++++..+++++.+++|+....+ ....+..| ++|+||||+.+... ..+.++.+|||||
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE 391 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDE 391 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEec
Confidence 999999999999999999999999999988543 34455555 99999999877431 4578899999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHH
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLL 564 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 564 (615)
+|++.. .....+......+++|+||||+.+....+. ++.+.....+.........+.+.+.......+ ++
T Consensus 392 ~Hrfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~---~~ 461 (681)
T PRK10917 392 QHRFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPDSRRDE---VY 461 (681)
T ss_pred hhhhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCcccHHH---HH
Confidence 998642 222333444556889999999887544333 33332222222222222345555543332222 22
Q ss_pred HHHh-ccCCCCcEEEEeCCcc--------hHHHHHHHhhcC--CCcEEEEcCCCChhhhhcC
Q psy12410 565 ELLG-IYQDQGSVIVFVDKQE--------NADSLLFHSMDP--CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 565 ~~l~-~~~~~~~~LIF~~s~~--------~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~v 615 (615)
..+. ....+.+++|||+.++ .+..+++.|... ++.|..+||+|++.+|+.+
T Consensus 462 ~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i 523 (681)
T PRK10917 462 ERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAV 523 (681)
T ss_pred HHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHH
Confidence 3322 2345679999999754 456777888764 5799999999999999864
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=1.4e-27 Score=265.28 Aligned_cols=253 Identities=19% Similarity=0.187 Sum_probs=179.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 337 ILDALKKQNYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 337 l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
+...+...+| .||++|..||+.|+.+ .+.+++|+||||||++|+++++..+. ++.+++||+||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHH
Confidence 3445556677 8999999999999865 36899999999999999999998873 4778999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEEcCCChhH---HHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISE---QISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 411 La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
||.|+++.+.+++..+++++++++|+..... ....+..| ++|||+||+.+... ..+.++.+|||||+|
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEechh
Confidence 9999999999999999999999999987655 34445544 79999999877431 457889999999999
Q ss_pred ccccCCcHHHHHHHHHhcC--CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHH
Q psy12410 487 RMFDMGFEPQVMRIIDNVR--PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLL 564 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~~~~--~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 564 (615)
++.. .+...+..... ..+++|+||||+.+....+ ..+.+.-...+.........+.+.+..... + ..++
T Consensus 368 ~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~--~-~~~~ 438 (630)
T TIGR00643 368 RFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDE--K-DIVY 438 (630)
T ss_pred hccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcch--H-HHHH
Confidence 8642 22223333332 2678999999987753333 222221111111111112344444433222 2 2333
Q ss_pred HHHh-ccCCCCcEEEEeCCcc--------hHHHHHHHhhc--CCCcEEEEcCCCChhhhhcC
Q psy12410 565 ELLG-IYQDQGSVIVFVDKQE--------NADSLLFHSMD--PCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 565 ~~l~-~~~~~~~~LIF~~s~~--------~a~~l~~~L~~--~g~~~~~lhg~~~~~eR~~v 615 (615)
..+. ....+.+++|||+.++ .|+.++..|.. .++.|..+||+|++.+|+.+
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i 500 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAV 500 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Confidence 3333 3345678999999874 46677777765 47899999999999999753
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=3.4e-27 Score=273.97 Aligned_cols=243 Identities=19% Similarity=0.195 Sum_probs=173.7
Q ss_pred EEccCCCchhHHhHHHHHHHHhcCCCC-----CCCCCCeEEEEcCcHHHHHHHHHHHHHhhh------------hcCcEE
Q psy12410 368 GIAKTGSGKTVAFVLPLLRHILDQPPL-----EETDGPMAIIMSPTRELCMQIGKEAKKFTK------------SLGLRV 430 (615)
Q Consensus 368 ~~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~~lil~Ptr~La~q~~~~~~~~~~------------~~~~~~ 430 (615)
|++|||||||++|++|++..++..... ...+++++|||+|+++|++|+++.++..+. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999865311 113468999999999999999998875322 246899
Q ss_pred EEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcH----HHHHHHHHhcCC
Q psy12410 431 VCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFE----PQVMRIIDNVRP 506 (615)
Q Consensus 431 ~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~----~~~~~i~~~~~~ 506 (615)
.+++|+++..+....+.+.++|||+||++|..+|.... ...|+++.+|||||+|.|++..+. ..+..|...+..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 99999999888877777789999999999988876431 246899999999999999865444 345555555567
Q ss_pred CCcEEEEeccCChHHHHHHHHHcC-CCEEEEECCcccccCCeEEEEEecChhHH--------------------H-HHHH
Q psy12410 507 DRQTVMFSATFPRQMEALARRILN-KPIEIQVGGRSVVCKEVEQHVIVLDEEQK--------------------M-LKLL 564 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~~-~p~~i~~~~~~~~~~~i~~~~~~~~~~~k--------------------~-~~l~ 564 (615)
+.|+|+||||+++ .+.++.++.. .|+.+.. ........+...+ .+....+ + ....
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 8999999999987 4667765544 3665543 2222222333222 1211100 0 0112
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhcCC---------------------------------CcEEEEcCCCChhh
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMDPC---------------------------------LEFLPLPAGITRFI 611 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g---------------------------------~~~~~lhg~~~~~e 611 (615)
.++.......++||||||+..|+.|+..|++.. +.+.++||+|++.+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 233333446789999999999999999997531 22678999999999
Q ss_pred hhcC
Q psy12410 612 WQWA 615 (615)
Q Consensus 612 R~~v 615 (615)
|..|
T Consensus 316 R~~I 319 (1490)
T PRK09751 316 RAIT 319 (1490)
T ss_pred HHHH
Confidence 9864
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=9.2e-27 Score=255.16 Aligned_cols=244 Identities=15% Similarity=0.164 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHH---------hHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVA---------FVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
-.+|.++++.++.++++|++|+||||||.+ |++|.+..+.... ....+++++|++||++||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 356999999999999999999999999997 3334444332110 01245789999999999999998887
Q ss_pred Hhhhh---cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHH
Q psy12410 421 KFTKS---LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQV 497 (615)
Q Consensus 421 ~~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~ 497 (615)
..... .++.+.+.+||... ........+.+|+|+|++.. ...|..+++|||||||.+..++ ..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--Dll 310 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DII 310 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHH
Confidence 76543 35678889999863 22222223579999997521 1357889999999999887664 445
Q ss_pred HHHHHhcC-CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC----------hhHHHHHHHHH
Q psy12410 498 MRIIDNVR-PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD----------EEQKMLKLLEL 566 (615)
Q Consensus 498 ~~i~~~~~-~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~ 566 (615)
..++..+. ..+|+|+||||++.++..+ ..++.+|..+.+.+. +...|.+.++... ...+. .+...
T Consensus 311 L~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~ 386 (675)
T PHA02653 311 IAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTA 386 (675)
T ss_pred HHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHH-HHHHH
Confidence 55555443 3469999999999888776 578888888877643 3355666664322 11222 22333
Q ss_pred Hhcc--CCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhh
Q psy12410 567 LGIY--QDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIW 612 (615)
Q Consensus 567 l~~~--~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR 612 (615)
+... ...+.+||||+++..|+.++..|... ++.+..|||+|++.+.
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq 436 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDE 436 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHH
Confidence 3322 23568999999999999999999876 7999999999998643
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=2.7e-26 Score=257.42 Aligned_cols=237 Identities=20% Similarity=0.276 Sum_probs=177.3
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH-hhhhcCcEE
Q psy12410 352 IQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK-FTKSLGLRV 430 (615)
Q Consensus 352 ~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-~~~~~~~~~ 430 (615)
+-.+++..|.+++++|++|+||||||++|.++++.... .++++||++|||++|.|++..+.. +....|..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34456677778899999999999999999999998751 356899999999999999988754 333445566
Q ss_pred EEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHH-HHHHHhcCCCC
Q psy12410 431 VCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQV-MRIIDNVRPDR 508 (615)
Q Consensus 431 ~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~-~~i~~~~~~~~ 508 (615)
++..++.. .+....+|+|+|||.|+..+... ..|.++++||||||| ++++.++...+ ..+...++++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 55554432 22345799999999999988754 568999999999999 68877765544 45666778899
Q ss_pred cEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHH-----HHHHHHHhccCCCCcEEEEeCCc
Q psy12410 509 QTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKM-----LKLLELLGIYQDQGSVIVFVDKQ 583 (615)
Q Consensus 509 q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~LIF~~s~ 583 (615)
|+|+||||++... +..|+.++..+.+.+... .|.+++..+....++ ..+..++.. ..+.+||||+++
T Consensus 148 qlIlmSATl~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 9999999998653 456776655555554432 356666555433332 123333332 357899999999
Q ss_pred chHHHHHHHhhc---CCCcEEEEcCCCChhhhhc
Q psy12410 584 ENADSLLFHSMD---PCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 584 ~~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~ 614 (615)
.+++.++..|.. .++.+..+||+|++.+|..
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~ 253 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDR 253 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHH
Confidence 999999999986 4899999999999999875
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=3.3e-26 Score=257.34 Aligned_cols=236 Identities=20% Similarity=0.246 Sum_probs=176.2
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH-hhhhcCcEEE
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK-FTKSLGLRVV 431 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-~~~~~~~~~~ 431 (615)
-.+++..+.+++++|++|+||||||++|.++++.... .++++||++|||++|.|++..+.. +....|..++
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3456677778899999999999999999999886531 235899999999999999988754 3444566777
Q ss_pred EEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccc-cccCCcH-HHHHHHHHhcCCCCc
Q psy12410 432 CVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADR-MFDMGFE-PQVMRIIDNVRPDRQ 509 (615)
Q Consensus 432 ~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~-~~~~~~~-~~~~~i~~~~~~~~q 509 (615)
...++.... .....|+|+|||.|++++..+ ..|.++++|||||||. .++.++. ..+..++..++++.|
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 766655322 234689999999999988754 4689999999999995 5665543 334556677888999
Q ss_pred EEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHH-----HHHHHHhccCCCCcEEEEeCCcc
Q psy12410 510 TVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKML-----KLLELLGIYQDQGSVIVFVDKQE 584 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~LIF~~s~~ 584 (615)
+|+||||++.. . +..|+.++..+.+.+.. ..|.+++..+....+.. .+..++.. ..+.+||||+++.
T Consensus 152 lilmSATl~~~--~-l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 223 (812)
T PRK11664 152 LLIMSATLDND--R-LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVG 223 (812)
T ss_pred EEEEecCCCHH--H-HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHH
Confidence 99999999864 2 35667665555554433 24667666555444432 23333332 3678999999999
Q ss_pred hHHHHHHHhhc---CCCcEEEEcCCCChhhhhc
Q psy12410 585 NADSLLFHSMD---PCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 585 ~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~ 614 (615)
+++.+++.|.. .++.+..+||+|++.+|+.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~ 256 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQK 256 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHH
Confidence 99999999986 5889999999999998864
No 61
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=9.5e-26 Score=234.03 Aligned_cols=251 Identities=18% Similarity=0.136 Sum_probs=171.3
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc---
Q psy12410 352 IQAQAIPAIMSGRD--LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL--- 426 (615)
Q Consensus 352 ~Q~~~i~~i~~~~~--~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--- 426 (615)
+|.++++.+..+.+ +++++|||||||++|++|++.. +.++||++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 49999999998874 7889999999999999998842 3458999999999999999999988543
Q ss_pred -CcEEEEEEcCCChhH-HH------------------HHH-hcCCcEEEEChHHHHHHHHhcCC-----CcccCCCccEE
Q psy12410 427 -GLRVVCVYGGTGISE-QI------------------SEL-KRGAEIIVCTPGRMIDMLAANSG-----RVTNLRRVTYI 480 (615)
Q Consensus 427 -~~~~~~~~g~~~~~~-~~------------------~~l-~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~l~~~~~l 480 (615)
++.+..+.|.+.... .. ..+ ...+.|+++||+.|..++..... ....+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 456666666422110 00 001 23578999999999766543110 01125789999
Q ss_pred EEccccccccCC-----cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHH--cCCCEEEEECCccc-----------
Q psy12410 481 VLDEADRMFDMG-----FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRI--LNKPIEIQVGGRSV----------- 542 (615)
Q Consensus 481 VvDEah~~~~~~-----~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~--~~~p~~i~~~~~~~----------- 542 (615)
||||+|.+...+ +...+..++.......++|++|||+++.+...+... ++.|+.+..+..-.
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 222344444444445799999999999888887765 56665443333000
Q ss_pred -------ccCCeEEEEEecChhHHHHHHHHHHhcc------CCCCcEEEEeCCcchHHHHHHHhhcCC--CcEEEEcCCC
Q psy12410 543 -------VCKEVEQHVIVLDEEQKMLKLLELLGIY------QDQGSVIVFVDKQENADSLLFHSMDPC--LEFLPLPAGI 607 (615)
Q Consensus 543 -------~~~~i~~~~~~~~~~~k~~~l~~~l~~~------~~~~~~LIF~~s~~~a~~l~~~L~~~g--~~~~~lhg~~ 607 (615)
....+.+.+.. ....+...+..++... ..++++||||+|+..|+.++..|...| +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 01245555544 2223333332222211 245789999999999999999999764 6889999999
Q ss_pred Chhhhhc
Q psy12410 608 TRFIWQW 614 (615)
Q Consensus 608 ~~~eR~~ 614 (615)
++.+|..
T Consensus 309 ~~~~R~~ 315 (357)
T TIGR03158 309 PKKDRER 315 (357)
T ss_pred CHHHHHH
Confidence 9999864
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=1.8e-26 Score=250.17 Aligned_cols=244 Identities=12% Similarity=0.077 Sum_probs=168.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...|+++|.++++.++.+.++++++|||+|||++++..+...+ .. ..+++||||||++|+.|+.+.+.++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-EN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-hc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999998765433222 21 2348999999999999999999998754
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
....+..+++|.... .+.+|+|+||+.|..... ..+..+++|||||||++.. ..+..++..++
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~ 247 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLD 247 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhh
Confidence 444555667766432 347999999999876432 2467899999999999874 45667777777
Q ss_pred CCCcEEEEeccCChHHHHH--HHHHcCCCEEEEECCccccc----CCeEEEEE-----------------------ecCh
Q psy12410 506 PDRQTVMFSATFPRQMEAL--ARRILNKPIEIQVGGRSVVC----KEVEQHVI-----------------------VLDE 556 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~--~~~~~~~p~~i~~~~~~~~~----~~i~~~~~-----------------------~~~~ 556 (615)
+.+++++||||+....... ...+++ |+...+....... ..+....+ .+..
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 7789999999997542211 122333 3222221100000 00000000 0111
Q ss_pred hHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 557 EQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 557 ~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..+...+..++..+ ..+.++||||+++++|+.|++.|...|+++..|||+|++.+|+.
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~ 385 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNE 385 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 12222333333322 24568999999999999999999999999999999999999975
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=1.7e-26 Score=241.95 Aligned_cols=239 Identities=19% Similarity=0.212 Sum_probs=160.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh----
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS---- 440 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~---- 440 (615)
+++++||||||||++|+++++..+.. ..+.++||++|+++||.|+++.+..++.. .++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 23678999999999999999999987542 344444433210
Q ss_pred -------HHHH-HH------hcCCcEEEEChHHHHHHHHhcCC-CcccC--CCccEEEEccccccccCCcHHHHHHHHHh
Q psy12410 441 -------EQIS-EL------KRGAEIIVCTPGRMIDMLAANSG-RVTNL--RRVTYIVLDEADRMFDMGFEPQVMRIIDN 503 (615)
Q Consensus 441 -------~~~~-~l------~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~l--~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 503 (615)
.... .. ....+|+|+||+.++..+..+.. ....+ -..++|||||||.+.++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0100 00 11268999999999887765211 11111 124799999999998765433 5555555
Q ss_pred cC-CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEec--ChhHHHHHHHHHHhccCCCCcEEEEe
Q psy12410 504 VR-PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVL--DEEQKMLKLLELLGIYQDQGSVIVFV 580 (615)
Q Consensus 504 ~~-~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~LIF~ 580 (615)
+. .+.|+|+||||+|..+..++..+...+....+...... ....+.+..+ ....+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 53 47899999999998777777665443221111111100 0112222211 12234445555555555578999999
Q ss_pred CCcchHHHHHHHhhcCCC--cEEEEcCCCChhhhhc
Q psy12410 581 DKQENADSLLFHSMDPCL--EFLPLPAGITRFIWQW 614 (615)
Q Consensus 581 ~s~~~a~~l~~~L~~~g~--~~~~lhg~~~~~eR~~ 614 (615)
+++..|+.++..|.+.+. .+..+||+|++.+|..
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHH
Confidence 999999999999988776 5999999999999964
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=252.27 Aligned_cols=273 Identities=21% Similarity=0.263 Sum_probs=206.9
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHH
Q psy12410 334 SKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCM 413 (615)
Q Consensus 334 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 413 (615)
...+...+.+.|+..|+++|.+|+..+.+|+|+|++.+||||||.+|++||+++++..+ ..++|||.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 44557788888999999999999999999999999999999999999999999998764 337899999999999
Q ss_pred HHHHHHHHhhhhcC--cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC-CcccCCCccEEEEcccccccc
Q psy12410 414 QIGKEAKKFTKSLG--LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG-RVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 414 q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~l~~~~~lVvDEah~~~~ 490 (615)
.+.+.+.++...++ +.+..++|.+...+....+.+.++||+++|.||..++..... ....++.+.||||||+|..-
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr- 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR- 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-
Confidence 99999999999887 788888888877777666677799999999999885554433 33446889999999999543
Q ss_pred CCcHHHHHHHHHh-------cCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-----h--
Q psy12410 491 MGFEPQVMRIIDN-------VRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-----E-- 556 (615)
Q Consensus 491 ~~~~~~~~~i~~~-------~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-----~-- 556 (615)
-.|+.+|..++.. .+...|+|+.|||+.+. .+++..+++....+.+.+...........+.... .
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 2355555444433 34578999999999865 6688888888776655555544443333332220 1
Q ss_pred -hHHHHHHHHHHhc-cCCCCcEEEEeCCcchHHHHH----HHhhcCC----CcEEEEcCCCChhhhhc
Q psy12410 557 -EQKMLKLLELLGI-YQDQGSVIVFVDKQENADSLL----FHSMDPC----LEFLPLPAGITRFIWQW 614 (615)
Q Consensus 557 -~~k~~~l~~~l~~-~~~~~~~LIF~~s~~~a~~l~----~~L~~~g----~~~~~lhg~~~~~eR~~ 614 (615)
..+...+..++.. ...+-++|+||.+...|+.++ ..+...| ..+..++|+|...+|..
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ 355 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRR 355 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHH
Confidence 1222222233222 123568999999999999997 4555555 67899999999999874
No 65
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=5.9e-26 Score=211.48 Aligned_cols=165 Identities=36% Similarity=0.600 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcE
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 429 (615)
||+|.++|+.+.+++++++.||||+|||++|++++++.+... ....+||++|+++|+.|++..+..++...++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 24589999999999999999999999887889
Q ss_pred EEEEEcCCChh-HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC--C
Q psy12410 430 VVCVYGGTGIS-EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR--P 506 (615)
Q Consensus 430 ~~~~~g~~~~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~--~ 506 (615)
+..++|+.... .....+..+++|+|+||++|..++.... .++.++++|||||+|.+..+++...+..|+..+. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 99999988755 4444455569999999999999998732 2566699999999999998888888999988873 3
Q ss_pred CCcEEEEeccCChHHHH
Q psy12410 507 DRQTVMFSATFPRQMEA 523 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~ 523 (615)
+.|+|++|||++..++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.9e-25 Score=239.56 Aligned_cols=254 Identities=19% Similarity=0.184 Sum_probs=192.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++.+++ .|+.|+||+||++||.|.++.+..++.
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 44 89999999999999999 99999999999999999998863 478899999999999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC----------------------CcccCCCccEEE
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG----------------------RVTNLRRVTYIV 481 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~----------------------~~~~l~~~~~lV 481 (615)
.+|+.+++++||.+.. ......+++|+|+|..-| .++|..+-. ...-...+.++|
T Consensus 170 ~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 9999999999997643 344556799999998777 344433210 011246688999
Q ss_pred Eccccccc-cCC-----------------cHHHHHHHHHhcCC-------------------------------------
Q psy12410 482 LDEADRMF-DMG-----------------FEPQVMRIIDNVRP------------------------------------- 506 (615)
Q Consensus 482 vDEah~~~-~~~-----------------~~~~~~~i~~~~~~------------------------------------- 506 (615)
|||||.++ |.. +...+..+...+..
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 99999654 310 11111111111100
Q ss_pred -------------------C------------------------------------------------------------
Q psy12410 507 -------------------D------------------------------------------------------------ 507 (615)
Q Consensus 507 -------------------~------------------------------------------------------------ 507 (615)
+
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 0
Q ss_pred -CcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccC-CCCcEEEEeCCcch
Q psy12410 508 -RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQ-DQGSVIVFVDKQEN 585 (615)
Q Consensus 508 -~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~ 585 (615)
..+.+||||.+....+|...|..+++.|...... .....+.++.++...|+..|..++.... .+.++||||+|+..
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 3478999999988888888888887654433222 2234455566778889999999887643 35689999999999
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 586 ADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 586 a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
++.|+..|.+.|+++..|||++++.++.
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~~ 513 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEAA 513 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHHH
Confidence 9999999999999999999998777664
No 67
>KOG0349|consensus
Probab=99.93 E-value=3.3e-26 Score=224.88 Aligned_cols=211 Identities=23% Similarity=0.363 Sum_probs=165.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhc---CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSL---GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
|.+||+-|.++||.|+++.|++|-... .++...+.||.-...|+..+..|.+|+|+||++|.+++..+ +..|..
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeee
Confidence 889999999999999999888876554 34556788899999999999999999999999999999875 467899
Q ss_pred ccEEEEccccccccCCcHHHHHHHHHhcCC------CCcEEEEeccCC-hHHHHHHHHHcCCCEEEEECCcccccCCeEE
Q psy12410 477 VTYIVLDEADRMFDMGFEPQVMRIIDNVRP------DRQTVMFSATFP-RQMEALARRILNKPIEIQVGGRSVVCKEVEQ 549 (615)
Q Consensus 477 ~~~lVvDEah~~~~~~~~~~~~~i~~~~~~------~~q~l~~SAT~~-~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~ 549 (615)
+.++|+|||+.++..++-..+..+..+++. ..|.++.|||+. -++..+....++-|..+........+..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999988888888888777753 368999999985 3456677778888988888777776666666
Q ss_pred EEEecChh--HHHHHH----------------------------HHHHhc--------cCCCCcEEEEeCCcchHHHHHH
Q psy12410 550 HVIVLDEE--QKMLKL----------------------------LELLGI--------YQDQGSVIVFVDKQENADSLLF 591 (615)
Q Consensus 550 ~~~~~~~~--~k~~~l----------------------------~~~l~~--------~~~~~~~LIF~~s~~~a~~l~~ 591 (615)
.+..+... .-+..| ..+|+. .-...++||||.|+..|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 55443211 111111 112210 0125689999999999999999
Q ss_pred HhhcC---CCcEEEEcCCCChhhhh
Q psy12410 592 HSMDP---CLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 592 ~L~~~---g~~~~~lhg~~~~~eR~ 613 (615)
+|.+. .|+|+++||+....||.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk 548 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERK 548 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHH
Confidence 99875 48999999999777775
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=246.74 Aligned_cols=248 Identities=22% Similarity=0.273 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 332 GVSKKILDALKKQNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 332 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
.+...+...+...++..+++.|+.++.... .+.|+|+++|||||||+++++.|++.+.+. +.++|||||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 467788888888888888888888887654 669999999999999999999999998653 678999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 411 La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
||.++++.++ .+..+|++|...+|+...... -..+++|||+||+++-.++.... ..+..+++|||||+|.+.+
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---chhhcccEEEEeeeeecCC
Confidence 9999999999 446679999999998864442 12349999999999988877654 2467899999999998887
Q ss_pred CCcHHHHHHHHHhc---CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccc-cCCeEEEEEecChh-------HH
Q psy12410 491 MGFEPQVMRIIDNV---RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVV-CKEVEQHVIVLDEE-------QK 559 (615)
Q Consensus 491 ~~~~~~~~~i~~~~---~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~-~~~i~~~~~~~~~~-------~k 559 (615)
....+.+..|+... .+.+|+|++|||+|+. .+++.+.-.+++.......... .-...+.+...... ..
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 65566666665544 4558999999999975 6788887777663222222211 11122222222211 22
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhh
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSM 594 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~ 594 (615)
...+..++.....++++||||+++..+...+..|.
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~ 274 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHH
Confidence 33444555566678899999999999999998887
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.5e-25 Score=233.48 Aligned_cols=254 Identities=20% Similarity=0.262 Sum_probs=193.3
Q ss_pred HHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 339 DALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 339 ~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
..|.. .|+..+++-|.++|..+++|+|+|+..|||+||++||.+|++-. .+-+|||.|..+|-.....
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHH
Confidence 33443 48999999999999999999999999999999999999999854 2369999999999888877
Q ss_pred HHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG- 492 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~- 492 (615)
.+... |+.+.++.+..+..+.. ..+..| .+|++-+|++|..--..+ ...-..+.+|||||||++..||
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHhhcCC
Confidence 77775 88999999887766553 344445 799999999985432211 1224568899999999999998
Q ss_pred -cHHHHHHHHHhc--CCCCcEEEEeccCChHHHHHHHHHcC--CCEEEEECCcccccCCeEEEEEecC-hhHHHHHHHHH
Q psy12410 493 -FEPQVMRIIDNV--RPDRQTVMFSATFPRQMEALARRILN--KPIEIQVGGRSVVCKEVEQHVIVLD-EEQKMLKLLEL 566 (615)
Q Consensus 493 -~~~~~~~i~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~--~p~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~ 566 (615)
|.+.+..+-... -++.+++.+|||.++.+..-+...|. .+. +.+. ++..++|...++... ...+..++..
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~- 224 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-IFRG--SFDRPNLALKVVEKGEPSDQLAFLAT- 224 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEe--cCCCchhhhhhhhcccHHHHHHHHHh-
Confidence 998888774332 34788999999999998887777664 332 2222 344456665554443 2333332222
Q ss_pred HhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 567 LGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 567 l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
......+..||||.|+..|+.++..|...|+.+..|||||+..+|+.+
T Consensus 225 -~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 225 -VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERV 272 (590)
T ss_pred -hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHH
Confidence 123346678999999999999999999999999999999999999753
No 70
>KOG0952|consensus
Probab=99.92 E-value=1.1e-24 Score=235.22 Aligned_cols=258 Identities=22% Similarity=0.249 Sum_probs=189.6
Q ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCC--CCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 344 QNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQP--PLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
.+|..++.+|..++|.+. ++-|+|||||||+|||.+|+|.||+.+.++. -....++-+++||+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 467889999999999987 5689999999999999999999998886521 1123457899999999999999999999
Q ss_pred HhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 421 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
+-+..+|+.|..++|++...... +. .++|||+||+.+--.-....+....++.|.+|||||+|.+ ....++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te--i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE--IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH--HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHH
Confidence 88888899999999998766543 32 3999999999983322222222234688999999999954 45567777777
Q ss_pred HHhcC-------CCCcEEEEeccCChHHHHHHHHHcCCC-EEEEECCcccccCCeEEEEEecChh---HH-----HHHHH
Q psy12410 501 IDNVR-------PDRQTVMFSATFPRQMEALARRILNKP-IEIQVGGRSVVCKEVEQHVIVLDEE---QK-----MLKLL 564 (615)
Q Consensus 501 ~~~~~-------~~~q~l~~SAT~~~~~~~~~~~~~~~p-~~i~~~~~~~~~~~i~~~~~~~~~~---~k-----~~~l~ 564 (615)
+..+. ....+|++|||+|+ .++++.++-.|| ..+...+..+.+-.+.+.++.+.-. .. .....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 66542 35679999999986 477787766663 4455555566666677777665432 11 11233
Q ss_pred HHHhccCCCCcEEEEeCCcchHHHHHHHhhc----CCCcEEEEcCC
Q psy12410 565 ELLGIYQDQGSVIVFVDKQENADSLLFHSMD----PCLEFLPLPAG 606 (615)
Q Consensus 565 ~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~ 606 (615)
+++..+..+.++||||.++..+...|..|.+ .|....++|+.
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~ 386 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP 386 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh
Confidence 3444555678999999999998888888865 35444444443
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=2.1e-23 Score=227.72 Aligned_cols=255 Identities=18% Similarity=0.176 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 428 (615)
++|+|.|++..+..++..|+.++||+|||++|++|++.+++. ++.|+||+|+++||.|+++.+..++..+|+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 455555556555545557999999999999999998877643 456999999999999999999999999999
Q ss_pred EEEEEEcCCC---hhHHHHHHhcCCcEEEEChHHH-HHHHHhc---CCCcccCCCccEEEEccccccc-cCC--------
Q psy12410 429 RVVCVYGGTG---ISEQISELKRGAEIIVCTPGRM-IDMLAAN---SGRVTNLRRVTYIVLDEADRMF-DMG-------- 492 (615)
Q Consensus 429 ~~~~~~g~~~---~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~---~~~~~~l~~~~~lVvDEah~~~-~~~-------- 492 (615)
.+.+++++.. ..........+++|+||||+.| .++|..+ ......+..+.++||||||.|+ |..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9998887632 2223333445799999999999 4555322 1112346789999999999885 211
Q ss_pred -------cHHHHHHHHHhcCCC----------------------------------------------------------
Q psy12410 493 -------FEPQVMRIIDNVRPD---------------------------------------------------------- 507 (615)
Q Consensus 493 -------~~~~~~~i~~~~~~~---------------------------------------------------------- 507 (615)
+...+..+...+.++
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 111222222222211
Q ss_pred -----------------------------------------------------------CcEEEEeccCChHHHHHHHHH
Q psy12410 508 -----------------------------------------------------------RQTVMFSATFPRQMEALARRI 528 (615)
Q Consensus 508 -----------------------------------------------------------~q~l~~SAT~~~~~~~~~~~~ 528 (615)
.++.+||+|......+|...|
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 234555555544444443322
Q ss_pred cCCCEEEEECCcccccCCe-EEEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCC
Q psy12410 529 LNKPIEIQVGGRSVVCKEV-EQHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAG 606 (615)
Q Consensus 529 ~~~p~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~ 606 (615)
. -.+ +.++... +.... ..-.+++....|+..++..+... ..+.++||||+|+..++.|+..|.+.|+++..|||+
T Consensus 381 ~-l~v-~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~ 457 (762)
T TIGR03714 381 S-LSV-VKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ 457 (762)
T ss_pred C-CCE-EEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 2 112 1221111 11011 11234566778888888877653 456799999999999999999999999999999999
Q ss_pred CChhhhhc
Q psy12410 607 ITRFIWQW 614 (615)
Q Consensus 607 ~~~~eR~~ 614 (615)
+.+.+|..
T Consensus 458 ~~~~E~~i 465 (762)
T TIGR03714 458 NAAKEAQI 465 (762)
T ss_pred ChHHHHHH
Confidence 99988753
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.7e-23 Score=226.52 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=179.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
|+ .|+++|..+++++..|+ |+.+.||+|||++|++|++...+ .|+.|+||+||++||.|.+..+..++.
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 55 89999999999998887 99999999999999999986654 477899999999999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcC---CCcccCCCccEEEEccccccc-cCC-------
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANS---GRVTNLRRVTYIVLDEADRMF-DMG------- 492 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~---~~~~~l~~~~~lVvDEah~~~-~~~------- 492 (615)
.+|+.+++++|+.+...+.... .+++|+||||+.| .++|..+- .....+..+.++||||||.|+ |..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 9999999999998844443443 4599999999998 45554321 011346889999999999876 311
Q ss_pred --------cHHHHHHHHHhcCCC---------------------------------------------------------
Q psy12410 493 --------FEPQVMRIIDNVRPD--------------------------------------------------------- 507 (615)
Q Consensus 493 --------~~~~~~~i~~~~~~~--------------------------------------------------------- 507 (615)
+...+..+...+..+
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 122222222222110
Q ss_pred ------------------------------------------------------------CcEEEEeccCChHHHHHHHH
Q psy12410 508 ------------------------------------------------------------RQTVMFSATFPRQMEALARR 527 (615)
Q Consensus 508 ------------------------------------------------------------~q~l~~SAT~~~~~~~~~~~ 527 (615)
..+.+||.|....-.+|...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 12455555554433333332
Q ss_pred HcCCCEEEEECCcccccCCeE-EEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcC
Q psy12410 528 ILNKPIEIQVGGRSVVCKEVE-QHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPA 605 (615)
Q Consensus 528 ~~~~p~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg 605 (615)
|.. .+ +.++.. .+..... .-.+.+....|+..|+..+... ..+.++||||+|+..++.|+..|.+.|+++..|||
T Consensus 384 Y~l-~v-~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNM-EV-VQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCC-cE-EECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 222 22 122111 1111111 1234456678888888888653 45779999999999999999999999999999999
Q ss_pred CCChhhhh
Q psy12410 606 GITRFIWQ 613 (615)
Q Consensus 606 ~~~~~eR~ 613 (615)
++.+.++.
T Consensus 461 ~~~~~e~~ 468 (790)
T PRK09200 461 KNAAKEAQ 468 (790)
T ss_pred CccHHHHH
Confidence 99988875
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=3.4e-22 Score=229.54 Aligned_cols=162 Identities=21% Similarity=0.223 Sum_probs=129.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+...|+++|.+++..++.+ |+|+++|||+|||+++++++...+. ..+.++|||+||++|+.|+...+..++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3458999999999988877 9999999999999999998888763 2356899999999999999999999875
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
..+..+..++|+..... ...+..+++|+|+||+.+...+..+ ...+..+++|||||||++........+...+...
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 54557888888776543 4456667899999999998776543 2567889999999999987554444555555555
Q ss_pred CCCCcEEEEeccCC
Q psy12410 505 RPDRQTVMFSATFP 518 (615)
Q Consensus 505 ~~~~q~l~~SAT~~ 518 (615)
.+..++++||||+.
T Consensus 160 ~~~~~il~lTaTP~ 173 (773)
T PRK13766 160 AKNPLVLGLTASPG 173 (773)
T ss_pred CCCCEEEEEEcCCC
Confidence 56678999999984
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.1e-22 Score=212.45 Aligned_cols=258 Identities=19% Similarity=0.170 Sum_probs=197.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
....++..+...-...||..|++++..|... .+-+++|..|||||+++++.|+..+ .+|.++.+++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--------~~G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--------EAGYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--------HcCCeeEEec
Confidence 3445666655554559999999999999844 3569999999999999999999987 5688999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCC---hhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEE
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTG---ISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVv 482 (615)
||..||.|.+..+.+++..+|+.+..++|... +......+.+| .+|||+|..-+.+- ..|.++.+||+
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~--------V~F~~LgLVIi 390 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK--------VEFHNLGLVII 390 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc--------eeecceeEEEE
Confidence 99999999999999999999999999999654 44455667777 99999997655442 56889999999
Q ss_pred ccccccccCCcHHHHHHHHHhcCC-CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHH
Q psy12410 483 DEADRMFDMGFEPQVMRIIDNVRP-DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 483 DEah~~~~~~~~~~~~~i~~~~~~-~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 561 (615)
||-|++. -+-+..+..... .+-+|+||||+.| +.++...+++.-.-.+.+.......|...++..+...+
T Consensus 391 DEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIP--RTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~-- 461 (677)
T COG1200 391 DEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIP--RTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE-- 461 (677)
T ss_pred ecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCch--HHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH--
Confidence 9999954 444445555555 5678999999988 56788888776544555544445667777665443332
Q ss_pred HHHHHHhccCCCCcEEEEeCCcc--------hHHHHHHHhhcC--CCcEEEEcCCCChhhhhcC
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQE--------NADSLLFHSMDP--CLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~--------~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~v 615 (615)
++..+......+.++.|.|+-++ .|..+++.|... ++.+..+||.|+..++++|
T Consensus 462 v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 462 VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 22233345556789999999987 466777888753 6789999999999988764
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.5e-22 Score=231.52 Aligned_cols=238 Identities=22% Similarity=0.295 Sum_probs=157.1
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH----HHHHHHHHHHHHhhhhcC
Q psy12410 352 IQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR----ELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 352 ~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr----~La~q~~~~~~~~~~~~~ 427 (615)
+..+++.+|..++.+|++|+||||||+. +|.+...... +....+++..|.| +||.++..++..- +|
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG 147 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETE---LG 147 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hc
Confidence 3445666777778889999999999995 6644332211 1223567777865 5555555555431 22
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHHHHHhcCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~ 506 (615)
-.+++-. .... ....++.|+|||||+|+..+..+ ..|..+++||||||| ++++++|...+..-+-..++
T Consensus 148 ~~VGY~v---rf~~---~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp 217 (1294)
T PRK11131 148 GCVGYKV---RFND---QVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP 217 (1294)
T ss_pred ceeceee---cCcc---ccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhhcCC
Confidence 2222111 1111 12345899999999999998754 448999999999999 78999987653322223346
Q ss_pred CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh------hHHHHHHHHHHhc--cCCCCcEEE
Q psy12410 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE------EQKMLKLLELLGI--YQDQGSVIV 578 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~--~~~~~~~LI 578 (615)
+.|+|+||||++. ..|...|.+.|+ +.+.+... .|.+.+..+.. .+....++..+.. ....+.+||
T Consensus 218 dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 8999999999975 467777766775 55554433 34555544422 1223333333221 234678999
Q ss_pred EeCCcchHHHHHHHhhcCCCc---EEEEcCCCChhhhhcC
Q psy12410 579 FVDKQENADSLLFHSMDPCLE---FLPLPAGITRFIWQWA 615 (615)
Q Consensus 579 F~~s~~~a~~l~~~L~~~g~~---~~~lhg~~~~~eR~~v 615 (615)
||++..+++.+++.|...++. +..+||+|++.+|..|
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~V 331 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRV 331 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHH
Confidence 999999999999999987765 6789999999998754
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=3.3e-22 Score=216.98 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=109.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
|+ .|+++|..+++++..|+ |+.++||+|||++|++|++...+. |..|+||+||+.||.|.++.+..++.
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 44 88999999988887776 999999999999999999644432 44699999999999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~ 489 (615)
.+|+.+++++|+.+........ .++|+|+||+.| .++|..+.. ....++.+.++||||||.|+
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999999998865543333 489999999999 888875421 12357889999999999876
No 77
>KOG0351|consensus
Probab=99.89 E-value=1.1e-22 Score=227.67 Aligned_cols=260 Identities=20% Similarity=0.230 Sum_probs=204.2
Q ss_pred HHHHHH-HCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 337 ILDALK-KQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 337 l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
+...+. ..|...+++-|.++|..++.|+++++.+|||.||++||.+|++.. ++..|||.|...|...+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH
Confidence 333333 459999999999999999999999999999999999999999843 56899999999998777
Q ss_pred HHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC---CcEEEEChHHHHHHHHhcCCCcccCCC---ccEEEEcccc
Q psy12410 416 GKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG---AEIIVCTPGRMIDMLAANSGRVTNLRR---VTYIVLDEAD 486 (615)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~---~~Iiv~Tp~~l~~~l~~~~~~~~~l~~---~~~lVvDEah 486 (615)
.. .+ ...+|...++.++....++ +..+..+ ++|++.||+++...-.-. .....|.. +.++||||||
T Consensus 321 v~---~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAH 395 (941)
T KOG0351|consen 321 VT---HL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAH 395 (941)
T ss_pred HH---hh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHH
Confidence 44 44 2348899999998877644 3444444 799999999985422110 01133444 8999999999
Q ss_pred ccccCC--cHHHHHHHHH--hcCCCCcEEEEeccCChHHHHHHHHHcC--CCEEEEECCcccccCCeEEEEEecChhHHH
Q psy12410 487 RMFDMG--FEPQVMRIID--NVRPDRQTVMFSATFPRQMEALARRILN--KPIEIQVGGRSVVCKEVEQHVIVLDEEQKM 560 (615)
Q Consensus 487 ~~~~~~--~~~~~~~i~~--~~~~~~q~l~~SAT~~~~~~~~~~~~~~--~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 560 (615)
+...|| |.+.+..+.. .-.+.+.+|++|||.+..++.-+...|+ +|. +....+...++...|..-......
T Consensus 396 CVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~~k~~~~~~ 472 (941)
T KOG0351|consen 396 CVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE---LFKSSFNRPNLKYEVSPKTDKDAL 472 (941)
T ss_pred HhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCCCCceEEEEeccCccch
Confidence 999988 8888877643 2234578999999999888887777664 443 333456667888777665555666
Q ss_pred HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 561 LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 561 ~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
..++..+..+.+.+.+||||.++.+|+.++..|...|+.+..||+||+..+|+.|
T Consensus 473 ~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~V 527 (941)
T KOG0351|consen 473 LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETV 527 (941)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHH
Confidence 6777788888889999999999999999999999999999999999999999865
No 78
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.6e-21 Score=213.85 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=141.0
Q ss_pred hhhhcCCHHHHHHHHhhhcCeEe-cCCCCCCccccccccCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHHcCC
Q psy12410 294 PEIARMTPEEVEKYKEELEGIRV-KGKGCPRPIKTWAQCGVSKKILDALK-----KQNYEKP---TPIQAQAIPAIMSGR 364 (615)
Q Consensus 294 ~~~~~~~~~~~~~~r~~~~~i~~-~~~~~p~~~~~~~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~ 364 (615)
+.+..++.+++...-..+. -.+ .|..+ ..+. ...|++...+...+. ..||..| +|+|.++|+.++.++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k-~~l~~~~~l-d~~l-~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELK-QRYQDGESL-DKLL-PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHHHcCCch-HHHH-HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 4556677766555433332 111 12111 1111 344678888888776 5688888 999999999999999
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
++|+.++||+|||++|++|++..++.. ..++||+||++||.|+.+.+..++..+|+.+.+++||.+...+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999999999887642 238999999999999999999999999999999999999888865
Q ss_pred HHhcCCcEEEEChHHH-HHHHHhcCCCcc----cCCCccEEEEccccccc
Q psy12410 445 ELKRGAEIIVCTPGRM-IDMLAANSGRVT----NLRRVTYIVLDEADRMF 489 (615)
Q Consensus 445 ~l~~~~~Iiv~Tp~~l-~~~l~~~~~~~~----~l~~~~~lVvDEah~~~ 489 (615)
.+ +++|+||||++| .+++..+..... -.+.+.++||||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 499999999999 999986521111 12466899999999876
No 79
>KOG0352|consensus
Probab=99.88 E-value=2.8e-22 Score=197.27 Aligned_cols=258 Identities=22% Similarity=0.279 Sum_probs=178.9
Q ss_pred HHHHHHHC-CCCCC-CHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHH
Q psy12410 337 ILDALKKQ-NYEKP-TPIQAQAIPAIMS-GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCM 413 (615)
Q Consensus 337 l~~~l~~~-~~~~~-~~~Q~~~i~~i~~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 413 (615)
+.++|++. |+.++ ++.|.+|+..+.. .+||++++|||+||++||.||+|.+ +.+.||+.|..+|+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 34455543 55544 7999999999875 5799999999999999999999976 448999999999999
Q ss_pred HHHHHHHHhhhhcCcEEEEEEcCCChhH---HHHHHh---cCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEE
Q psy12410 414 QIGKEAKKFTKSLGLRVVCVYGGTGISE---QISELK---RGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 414 q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~---~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVv 482 (615)
.....+.++ .+++..+.+..+..+ .+..|. ....|++.||++. ..+|.. +.+-.-+.||||
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vV 147 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIVV 147 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEEe
Confidence 988888776 445555555443332 233443 3478999999875 334432 133455789999
Q ss_pred ccccccccCC--cHHHHHHH--HHhcCCCCcEEEEeccCChHHHHHHH--HHcCCCEEEEECCcccccCCeEEEEEecC-
Q psy12410 483 DEADRMFDMG--FEPQVMRI--IDNVRPDRQTVMFSATFPRQMEALAR--RILNKPIEIQVGGRSVVCKEVEQHVIVLD- 555 (615)
Q Consensus 483 DEah~~~~~~--~~~~~~~i--~~~~~~~~q~l~~SAT~~~~~~~~~~--~~~~~p~~i~~~~~~~~~~~i~~~~~~~~- 555 (615)
||||+...|| |.+.+..+ +...-++...|.+|||.++.+++-+- ..|.+|+-+.-.. .-..++.+-+..-.
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP--~FR~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP--TFRDNLFYDNHMKSF 225 (641)
T ss_pred chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc--chhhhhhHHHHHHHH
Confidence 9999999988 78877766 44445688899999999999887554 3567886443221 11111111110000
Q ss_pred hhHHHHHHHHH----Hhcc--------CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 556 EEQKMLKLLEL----LGIY--------QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 556 ~~~k~~~l~~~----l~~~--------~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
-.+-+..|..+ |... ...|..||||.|++.|+.++-.|...|+.+.++|.|+...||..|
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 01112223222 2211 114678999999999999999999999999999999999999764
No 80
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=2.8e-21 Score=222.07 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=163.9
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 354 AQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 354 ~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
.+++..|.+++.+|++|+||||||+. +|.+-.-... +...+++++.|.|..|..++..+.. .++..++..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~---elg~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAE---ELGTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHH---HhCCCcceE
Confidence 35556666778899999999999996 4544322111 2234788899999998888555444 345555555
Q ss_pred EcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHH-HHHHHHhcCCCCcEE
Q psy12410 434 YGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQ-VMRIIDNVRPDRQTV 511 (615)
Q Consensus 434 ~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~-~~~i~~~~~~~~q~l 511 (615)
.|.....+.. ....+.|+|+|+|.|+..+..+ ..|..+++||||||| ++++.+|... +..++ ..+++.|+|
T Consensus 143 VGY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il-~~rpdLKlI 215 (1283)
T TIGR01967 143 VGYKVRFHDQ--VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLL-PRRPDLKII 215 (1283)
T ss_pred EeeEEcCCcc--cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHH-hhCCCCeEE
Confidence 5543222221 2235899999999999988764 458999999999999 7999888876 44444 446789999
Q ss_pred EEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh------hHHHHHHHHHHhcc--CCCCcEEEEeCCc
Q psy12410 512 MFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE------EQKMLKLLELLGIY--QDQGSVIVFVDKQ 583 (615)
Q Consensus 512 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~~LIF~~s~ 583 (615)
+||||++. ..|+..|...|+ +.+.+.... +...+..+.. .++...+...+... ...|.+||||++.
T Consensus 216 lmSATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 216 ITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEeCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999964 567777766675 555544432 3333332221 12333333333221 2457999999999
Q ss_pred chHHHHHHHhhcCC---CcEEEEcCCCChhhhhcC
Q psy12410 584 ENADSLLFHSMDPC---LEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 584 ~~a~~l~~~L~~~g---~~~~~lhg~~~~~eR~~v 615 (615)
.+++.++..|...+ +.+..+||+|++.+|..|
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v 324 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV 324 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH
Confidence 99999999998764 468899999999998754
No 81
>KOG0353|consensus
Probab=99.87 E-value=3.2e-21 Score=187.06 Aligned_cols=268 Identities=19% Similarity=0.196 Sum_probs=200.7
Q ss_pred ccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 330 QCGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 330 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
+++.+.+....|.. ...++++|.|..+|.+.+.|.+++++.|||.||++||.+|+|-. ...+|||+|.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 34555666665553 36789999999999999999999999999999999999999854 5679999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhc---CCcEEEEChHHHHH---HHHhcCCCcccCCCccE
Q psy12410 409 RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKR---GAEIIVCTPGRMID---MLAANSGRVTNLRRVTY 479 (615)
Q Consensus 409 r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~---~~~Iiv~Tp~~l~~---~l~~~~~~~~~l~~~~~ 479 (615)
..|.....-.++.+ |+....+...++..+.. ..+.+ ...+|+.||+.+.. ++.. ..+......+.+
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnk-leka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNK-LEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHH-HHHHhhcceeEE
Confidence 99988876666665 77777777666654432 12222 26789999998742 1211 112244577889
Q ss_pred EEEccccccccCC--cHHHHH--HHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC
Q psy12410 480 IVLDEADRMFDMG--FEPQVM--RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD 555 (615)
Q Consensus 480 lVvDEah~~~~~~--~~~~~~--~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~ 555 (615)
|.|||+|+...|| |.+.+. .|+...-++..+|+++||.++.+-.-+..++.-...+++ ..++..+++.+.+..-+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCC
Confidence 9999999999887 666554 346666678889999999998888777777653322222 23455677777766544
Q ss_pred --hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 556 --EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 556 --~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..+-...+..++.....+...||||-+++.|+.++..|+..|+.+..+|..|...+|.-
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~ 358 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSG 358 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccc
Confidence 34445566677776667778999999999999999999999999999999999988753
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=9.4e-21 Score=212.84 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=162.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...|+|+|..+.........+|+.||||+|||.++++.+...+ .. +....++|.+||+++++|++..+..++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 4589999998865544566789999999999999877665443 22 23567999999999999999999876543
Q ss_pred c--CcEEEEEEcCCChhHHHH--------------------HHhc-------CCcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 426 L--GLRVVCVYGGTGISEQIS--------------------ELKR-------GAEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 426 ~--~~~~~~~~g~~~~~~~~~--------------------~l~~-------~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
. ...+.+.+|.......+. .... -.+|+|||+..++..+..... ..+..
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR~ 435 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIRG 435 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHHH
Confidence 2 345777777553221110 1111 169999999988765543321 12222
Q ss_pred ----ccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCC----------CEEEEECCc-
Q psy12410 477 ----VTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNK----------PIEIQVGGR- 540 (615)
Q Consensus 477 ----~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~----------p~~i~~~~~- 540 (615)
-++|||||+|.+ +......+..++..+ .....+|+||||+|..+...+...+.. |........
T Consensus 436 ~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 436 FGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred HhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 348999999975 333334455555443 235679999999998876544332221 111000000
Q ss_pred --ccccC------CeEEEEEe--c--Ch-hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCC---CcEEEEc
Q psy12410 541 --SVVCK------EVEQHVIV--L--DE-EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPC---LEFLPLP 604 (615)
Q Consensus 541 --~~~~~------~i~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g---~~~~~lh 604 (615)
..... .....+.+ . .. ......+..++.....++++||||||+..|+.++..|.+.+ +++.++|
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 00000 01111111 1 11 11122233334444557789999999999999999998764 6899999
Q ss_pred CCCChhhhh
Q psy12410 605 AGITRFIWQ 613 (615)
Q Consensus 605 g~~~~~eR~ 613 (615)
|++.+.+|.
T Consensus 595 srf~~~dR~ 603 (878)
T PRK09694 595 ARFTLNDRR 603 (878)
T ss_pred CCCCHHHHH
Confidence 999999995
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.2e-21 Score=210.47 Aligned_cols=128 Identities=24% Similarity=0.317 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|..+--++..| -|+.++||+|||++|++|++..++. |..|+||+||++||.|.++++..++..+|
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 6777776655555444 4999999999999999999987753 44599999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCCCcccC-----CCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSGRVTNL-----RRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~~~~~l-----~~~~~lVvDEah~~~ 489 (615)
+.+.+++||.+........ .++|+||||+.| .++|..+. ...+ ..+.++||||||.|+
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhh
Confidence 9999999998877664443 489999999999 88887652 1222 689999999999876
No 84
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=4.8e-20 Score=186.95 Aligned_cols=164 Identities=19% Similarity=0.190 Sum_probs=131.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...++.||..+....+.+ |++++.|||.|||+++++-+.+.+.+. .+ ++|||+||+-|+.|++..|.+++..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347889999988887766 999999999999999999999888664 24 8999999999999999999999776
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
..-.++.++|.....+. ..++....|+|+||+.+.+-|..+ .+++.++.+||+||||+.....-+..+.+..-...
T Consensus 85 p~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 85 PEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred ChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 55677888887765555 445556899999999998888765 48899999999999998764443444555444455
Q ss_pred CCCcEEEEeccCChHH
Q psy12410 506 PDRQTVMFSATFPRQM 521 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~ 521 (615)
.++.+|++|||+....
T Consensus 161 k~~~ilgLTASPGs~~ 176 (542)
T COG1111 161 KNPLILGLTASPGSDL 176 (542)
T ss_pred cCceEEEEecCCCCCH
Confidence 6777999999997553
No 85
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=4.9e-20 Score=175.65 Aligned_cols=187 Identities=41% Similarity=0.658 Sum_probs=156.5
Q ss_pred CCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.++..|+++|.+++..+... +++++.++||+|||.+++.+++.++... ....+||++|+..++.|+...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 46778999999999999998 9999999999999999999999887543 1467999999999999999999988
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHhcCC-cEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHH
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRII 501 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 501 (615)
+..........+++.........+..+. +|+++|++.|...+.... .....+.+|||||||.+....+...+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 7655445566666666566666666666 999999999999887642 456778899999999888656788888998
Q ss_pred HhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECC
Q psy12410 502 DNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGG 539 (615)
Q Consensus 502 ~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 539 (615)
..+++..+++++|||++......+..++.+.+.+....
T Consensus 155 ~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88888899999999999999999999998877766654
No 86
>KOG0951|consensus
Probab=99.85 E-value=1.7e-20 Score=205.41 Aligned_cols=264 Identities=21% Similarity=0.252 Sum_probs=192.1
Q ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCC---CCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEE---TDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~---~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
|...++.+|..+.++.+.+ .|+++|||||+|||.++++-||+.+-....... ....+++|++|..+||..+...|.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 5667999999999998865 689999999999999999999999865543221 224589999999999999999999
Q ss_pred HhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 421 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
+....+|+.|.-.+|+...... .+ .+..|+||||+.. +.+..+.+......-+.++|+||.|.+ +...++.+..|
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~--qi-eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESI 460 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKE--QI-EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESI 460 (1674)
T ss_pred hhccccCcEEEEecccccchhh--hh-hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHH
Confidence 9999999999999998764432 11 2489999999998 445544333333455789999999954 44456777666
Q ss_pred HHhc-------CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhH--HH-H----HHHHH
Q psy12410 501 IDNV-------RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQ--KM-L----KLLEL 566 (615)
Q Consensus 501 ~~~~-------~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~--k~-~----~l~~~ 566 (615)
...+ ...+.++++|||+|+. ++.+.-+..++-.+...+.++.+-.+.|-++.+.... +. . .+++-
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeK 539 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEK 539 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHH
Confidence 5543 2367899999999975 4444444455555566666777777888887775432 22 1 22223
Q ss_pred HhccCCCCcEEEEeCCcchHHHHHHHhhc-------------------------------------CCCcEEEEcCCCCh
Q psy12410 567 LGIYQDQGSVIVFVDKQENADSLLFHSMD-------------------------------------PCLEFLPLPAGITR 609 (615)
Q Consensus 567 l~~~~~~~~~LIF~~s~~~a~~l~~~L~~-------------------------------------~g~~~~~lhg~~~~ 609 (615)
+-.....++|||||.+++++-+.|..++. ..|-+..-|+||+.
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 33444568999999999987777766551 12456688999999
Q ss_pred hhhhc
Q psy12410 610 FIWQW 614 (615)
Q Consensus 610 ~eR~~ 614 (615)
.+|+-
T Consensus 620 ~dR~~ 624 (1674)
T KOG0951|consen 620 KDREL 624 (1674)
T ss_pred chHHH
Confidence 99874
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=5.2e-20 Score=201.29 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=154.1
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 347 EKPTPIQAQAIPAIMS-G--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~-~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
..|+|+|.+|+..++. | +..|+++|||+|||++.+..+. .+ +..+|||||+..|+.||...|.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999999883 4 4789999999999999765443 32 2349999999999999999999986
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC-----CcccCCCccEEEEccccccccCCcHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG-----RVTNLRRVTYIVLDEADRMFDMGFEPQVM 498 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~l~~~~~lVvDEah~~~~~~~~~~~~ 498 (615)
......+..++|+... . ......|+|+|+.++......... ..+.-..+++||+||||++. ...+.
T Consensus 323 ~l~~~~I~~~tg~~k~-~----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-R----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFR 393 (732)
T ss_pred CCCCceEEEEecCccc-c----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHH
Confidence 5444566666664321 1 112378999999887533211100 00112468899999999986 45566
Q ss_pred HHHHhcCCCCcEEEEeccCChHHH--HHHHHHcCCCEEEEECCcccc----cCCeEEEEEecC-----------------
Q psy12410 499 RIIDNVRPDRQTVMFSATFPRQME--ALARRILNKPIEIQVGGRSVV----CKEVEQHVIVLD----------------- 555 (615)
Q Consensus 499 ~i~~~~~~~~q~l~~SAT~~~~~~--~~~~~~~~~p~~i~~~~~~~~----~~~i~~~~~~~~----------------- 555 (615)
.++..+.. ...|+||||+...-. ..+..+++ |......-.... ...+....+.|+
T Consensus 394 ~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQA-HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcCc-CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 66666643 347999999964321 12233333 332222110000 011111111111
Q ss_pred ------hhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 556 ------EEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 556 ------~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+..|+..+..++..+ ..+.++||||++...+..++..|. +..|||++++.+|..+
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~i 533 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQI 533 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHH
Confidence 223344444455443 246799999999999999988882 5679999999999864
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.3e-19 Score=199.32 Aligned_cols=249 Identities=18% Similarity=0.175 Sum_probs=173.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|.-+.-++..|+ |+.++||+|||++|++|++...+. |..|-||+||..||.|.++.+..++..+|
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 78888887777676664 999999999999999999644432 33477999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCCC---cccCCCccEEEEccccccc-cC-----------
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSGR---VTNLRRVTYIVLDEADRMF-DM----------- 491 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~lVvDEah~~~-~~----------- 491 (615)
+.+++++|+.+..++.... .++|+|+||+.| .++|..+... ...++.+.++||||||.|+ |.
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998877765553 389999999999 8888754211 1236789999999999876 31
Q ss_pred ----CcHHHHHHHHHhcCCC------------------------------------------------------------
Q psy12410 492 ----GFEPQVMRIIDNVRPD------------------------------------------------------------ 507 (615)
Q Consensus 492 ----~~~~~~~~i~~~~~~~------------------------------------------------------------ 507 (615)
..+..+..+...+..+
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 1222333333333211
Q ss_pred ---------------------------------------------------------CcEEEEeccCChHHHHHHHHHcC
Q psy12410 508 ---------------------------------------------------------RQTVMFSATFPRQMEALARRILN 530 (615)
Q Consensus 508 ---------------------------------------------------------~q~l~~SAT~~~~~~~~~~~~~~ 530 (615)
..+.+||.|...+..+|...|..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 22445555554443333333322
Q ss_pred CCEEEEECCcccccCCeE-EEEEecChhHHHHHHHHHHhc-cCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCC
Q psy12410 531 KPIEIQVGGRSVVCKEVE-QHVIVLDEEQKMLKLLELLGI-YQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGIT 608 (615)
Q Consensus 531 ~p~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~-~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 608 (615)
+-+ .++. ..+...+. .-.+......|+..+...+.. +..+.+|||||+|+..++.|+..|...|+++..|||.
T Consensus 389 ~vv--~IPt-nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVV--VIPT-NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEE--EcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 211 1111 11111111 123345667788888888765 3456799999999999999999999999999999996
Q ss_pred hhhhh
Q psy12410 609 RFIWQ 613 (615)
Q Consensus 609 ~~eR~ 613 (615)
|.+|+
T Consensus 464 q~eRE 468 (830)
T PRK12904 464 NHERE 468 (830)
T ss_pred hHHHH
Confidence 66665
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.83 E-value=5.4e-19 Score=197.30 Aligned_cols=231 Identities=20% Similarity=0.226 Sum_probs=151.0
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 347 EKPTPIQAQAIPAIMSG---RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~---~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
..|++.|++++..+..+ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+++.+++.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~- 213 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRAR- 213 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHH-
Confidence 46999999999999874 78999999999999999887776652 3678999999999999998888775
Q ss_pred hhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc---HHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF---EPQ 496 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~---~~~ 496 (615)
++..+..++|+.+..+.. ..+..| ++|||+|++.+. ..+.++.+|||||+|.....+. ..+
T Consensus 214 --fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 214 --FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred --hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 367899999998765543 333444 799999997762 3478899999999997653321 111
Q ss_pred HH--HHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHH-------HHHHHHHH
Q psy12410 497 VM--RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQK-------MLKLLELL 567 (615)
Q Consensus 497 ~~--~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~~l 567 (615)
.. .++.....+.|+|++|||++......+. -+....+...............++......+ ...|+..+
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHH
Confidence 22 2333445688999999998755433322 2222222222221111111112222211110 12334444
Q ss_pred h-ccCCCCcEEEEeCCcchHHHHHHHhhcCCCcE
Q psy12410 568 G-IYQDQGSVIVFVDKQENADSLLFHSMDPCLEF 600 (615)
Q Consensus 568 ~-~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~ 600 (615)
. .+..+.++|||+|++..+-.+.+..+..-+.|
T Consensus 360 ~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C 393 (679)
T PRK05580 360 KQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAEC 393 (679)
T ss_pred HHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCC
Confidence 3 33345689999999998877766655443344
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.82 E-value=2.8e-19 Score=190.30 Aligned_cols=240 Identities=19% Similarity=0.171 Sum_probs=153.0
Q ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 346 YEKPTPIQAQAIPAIMS----GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
...|+++|.+|+..+.. ++..++++|||+|||++++..+... +..+||||||.+|+.|+.+.+..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHH
Confidence 34799999999999998 8899999999999999976555433 23399999999999999876666
Q ss_pred hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHH--HHhcCCCcccCCCccEEEEccccccccCCcHHHHHH
Q psy12410 422 FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDM--LAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMR 499 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~--l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~ 499 (615)
+.... ..+..+.|+. .... . ..|+|+|.+.+... +.. ...+.+.+|||||||++.... ...
T Consensus 103 ~~~~~-~~~g~~~~~~-~~~~-----~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~----~~~ 165 (442)
T COG1061 103 FLLLN-DEIGIYGGGE-KELE-----P-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPS----YRR 165 (442)
T ss_pred hcCCc-cccceecCce-eccC-----C-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHH----HHH
Confidence 64421 1233333332 1111 0 36999999988764 221 234479999999999988443 334
Q ss_pred HHHhcCCCCcEEEEeccCChHH---HHHHHHHcCCCEEEEECCcccc----cCCeEEEEEec------------------
Q psy12410 500 IIDNVRPDRQTVMFSATFPRQM---EALARRILNKPIEIQVGGRSVV----CKEVEQHVIVL------------------ 554 (615)
Q Consensus 500 i~~~~~~~~q~l~~SAT~~~~~---~~~~~~~~~~p~~i~~~~~~~~----~~~i~~~~~~~------------------ 554 (615)
+...+.....+|+||||++... ...+..+++ |+...+.-.... ........+.+
T Consensus 166 ~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 166 ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred HHHhhhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 4444433333899999987432 112222222 333222211110 00111111111
Q ss_pred --------------------ChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 555 --------------------DEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 555 --------------------~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
....+...+..++.......++||||.+..++..++..|...|+ +..+.|..++.+|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~ 323 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREA 323 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHH
Confidence 11112222333333332356899999999999999999999988 999999999999975
Q ss_pred C
Q psy12410 615 A 615 (615)
Q Consensus 615 v 615 (615)
+
T Consensus 324 i 324 (442)
T COG1061 324 I 324 (442)
T ss_pred H
Confidence 3
No 91
>KOG0354|consensus
Probab=99.81 E-value=3.4e-19 Score=191.10 Aligned_cols=169 Identities=20% Similarity=0.203 Sum_probs=132.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...++.||.+++...+ |+|+|+++|||+|||++++..|++|+-+.+ ..+|||++||+-|+.|....+..++.+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 4479999999999988 999999999999999999999999987654 478999999999999998666666554
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH-HHHHhc
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM-RIIDNV 504 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-~i~~~~ 504 (615)
..+....||.........+....+|+|+||+.|.+.|..+.. ..|+.+.++||||||+.....-+..++ .++...
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 455566666544444456777799999999999999887542 237899999999999877554455554 555444
Q ss_pred CCCCcEEEEeccCChHHHHHH
Q psy12410 505 RPDRQTVMFSATFPRQMEALA 525 (615)
Q Consensus 505 ~~~~q~l~~SAT~~~~~~~~~ 525 (615)
....|+|++|||+....+...
T Consensus 209 ~~~~qILgLTASpG~~~~~v~ 229 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQ 229 (746)
T ss_pred hccccEEEEecCCCccHHHHH
Confidence 444599999999986544433
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.81 E-value=4.5e-18 Score=189.61 Aligned_cols=257 Identities=16% Similarity=0.134 Sum_probs=195.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH----cC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 332 GVSKKILDALKKQNYEKPTPIQAQAIPAIM----SG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 332 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
..+......+...-...-|+-|..||..+. ++ .|-++||..|-|||.+++-+++..+ .+|.+|.||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV--------~~GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV--------MDGKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh--------cCCCeEEEE
Confidence 345556666666555589999999999987 33 4779999999999999998888887 458899999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
|||.-||.|+++.|+.-+.+++++|..+.--.+..++. ..+..| .||||+|. .+|..+ ..|.++.+||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kd----v~FkdLGLlI 721 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKD----VKFKDLGLLI 721 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCC----cEEecCCeEE
Confidence 99999999999999999999999999987776666663 445556 89999996 444433 6689999999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHH
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 561 (615)
|||=|++. -.-..-+..++.++-+|-||||+.|.--.++...+.+.-.|..++ .....|..++...+...-..
T Consensus 722 IDEEqRFG-----Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R~pV~T~V~~~d~~~ire 794 (1139)
T COG1197 722 IDEEQRFG-----VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDRLPVKTFVSEYDDLLIRE 794 (1139)
T ss_pred EechhhcC-----ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCCcceEEEEecCChHHHHH
Confidence 99999965 333344455567777999999998865556666666544333322 22345666665444443333
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhhhc
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~ 614 (615)
.++.++.-+|++...+|.++..+.++..|+.. ...+...||.|+..+=+.
T Consensus 795 ---AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~ 846 (1139)
T COG1197 795 ---AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEE 846 (1139)
T ss_pred ---HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHH
Confidence 34455556899999999999999999999985 778999999999887554
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.7e-18 Score=192.88 Aligned_cols=173 Identities=25% Similarity=0.276 Sum_probs=144.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|.++|++++.+|..|..++++||||+|||++...++...+. +|.+++|+.|.++|.+|.+..+...+...
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~--------~~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR--------DGQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH--------cCCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 3899999999999999999999999999999998877776663 45669999999999999999888776543
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
.-.+++++|+.. +..++.|+|+|.+.|..++..+. ..+..+.+||+||+|.|.+...+..++.++-+++.
T Consensus 190 ~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 190 ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 223567777764 34458999999999999998874 56889999999999999999888999999999999
Q ss_pred CCcEEEEeccCChHHHHHHHHHc---CCCEEEEEC
Q psy12410 507 DRQTVMFSATFPRQMEALARRIL---NKPIEIQVG 538 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~---~~p~~i~~~ 538 (615)
..++|+||||.++. .+|..|+. ..|+.+...
T Consensus 260 ~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t 293 (1041)
T COG4581 260 HVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVST 293 (1041)
T ss_pred CCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEee
Confidence 99999999999987 56887776 345544443
No 94
>KOG2340|consensus
Probab=99.80 E-value=4.1e-19 Score=179.63 Aligned_cols=259 Identities=19% Similarity=0.252 Sum_probs=176.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccC-CCch--hHHhHHHHHHHHhcCCCCC-----------------------CCC
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKT-GSGK--TVAFVLPLLRHILDQPPLE-----------------------ETD 398 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~T-GsGK--T~~~~l~~l~~~~~~~~~~-----------------------~~~ 398 (615)
.-..+|+.|.+++.++.+++|+++.-.| +.|+ +.+||+++++|+++.+... +-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457999999999999999999987544 4555 5699999999998754321 123
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCc---------EEEEEEcC--------CChhHHHHHHhc-------------
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGL---------RVVCVYGG--------TGISEQISELKR------------- 448 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~---------~~~~~~g~--------~~~~~~~~~l~~------------- 448 (615)
.|+||||||+|+.|..+++.+..++.+.+- ++.--|+| ..+++....+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 599999999999999999999888544321 11111222 112222222222
Q ss_pred ------------CCcEEEEChHHHHHHHHhcCCCcc---cCCCccEEEEccccccccCCcHHHHHHHHHhcCCC------
Q psy12410 449 ------------GAEIIVCTPGRMIDMLAANSGRVT---NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD------ 507 (615)
Q Consensus 449 ------------~~~Iiv~Tp~~l~~~l~~~~~~~~---~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~------ 507 (615)
..|||||+|.+|.+++.....+.. .|++|.++|||.||.|+ +++|.++..|+.+++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 369999999999999985443333 27899999999999887 78899999999988532
Q ss_pred ------------------CcEEEEeccCChHHHHHHHHHcCCCEEEEECCc-----cc--ccCCeEEEE--EecC-----
Q psy12410 508 ------------------RQTVMFSATFPRQMEALARRILNKPIEIQVGGR-----SV--VCKEVEQHV--IVLD----- 555 (615)
Q Consensus 508 ------------------~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~-----~~--~~~~i~~~~--~~~~----- 555 (615)
+|+|+||+-..+.+..++..+|.|......... .. ....|.|.+ +.+.
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 699999999999999999999987543221111 11 111122211 1111
Q ss_pred hhHHHHHHHH-HHhccCC--CCcEEEEeCCcchHHHHHHHhhcCCCcEEEEc
Q psy12410 556 EEQKMLKLLE-LLGIYQD--QGSVIVFVDKQENADSLLFHSMDPCLEFLPLP 604 (615)
Q Consensus 556 ~~~k~~~l~~-~l~~~~~--~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lh 604 (615)
...++...+. ++-.+.+ ..-||||+++......|.++|++.++..+.||
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~ 583 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMIN 583 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHh
Confidence 1223333222 2222221 34589999999999999999999887776655
No 95
>KOG0922|consensus
Probab=99.80 E-value=1.1e-18 Score=182.57 Aligned_cols=246 Identities=20% Similarity=0.244 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEE
Q psy12410 351 PIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRV 430 (615)
Q Consensus 351 ~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~ 430 (615)
.+-.+++..+..++-+|++|+||||||+. +-+++.... .....++.|..|+|..|..++ ++++...+..+
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG---~~~~g~I~~TQPRRVAavslA---~RVAeE~~~~l 123 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAG---FASSGKIACTQPRRVAAVSLA---KRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcc---cccCCcEEeecCchHHHHHHH---HHHHHHhCCCc
Confidence 34456677777788899999999999998 333333221 122344999999999998884 44444444444
Q ss_pred EEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHHHHHhcCCCCc
Q psy12410 431 VCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMRIIDNVRPDRQ 509 (615)
Q Consensus 431 ~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~~~q 509 (615)
+...|..-..+.... ....|.++|.|+|+..+..+ ..|+.+++||||||| +-+..+....+.+-+-..+++..
T Consensus 124 G~~VGY~IRFed~ts--~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDSTS--KDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CceeeeEEEecccCC--CceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 444443333333221 12789999999999988765 568999999999999 66655544444444445577889
Q ss_pred EEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHH
Q psy12410 510 TVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSL 589 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l 589 (615)
+|++|||+. .+.|...|.+.|+ +.+.+..+++..+...-...++-+.....+..|+...+.|.+|||.+.+++++.+
T Consensus 198 lIimSATld--a~kfS~yF~~a~i-~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 198 LIIMSATLD--AEKFSEYFNNAPI-LTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred EEEEeeeec--HHHHHHHhcCCce-EeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 999999995 4555555555566 6676666554433332222233344444455566667888999999999999999
Q ss_pred HHHhhcC----CC----cEEEEcCCCChhhhhcC
Q psy12410 590 LFHSMDP----CL----EFLPLPAGITRFIWQWA 615 (615)
Q Consensus 590 ~~~L~~~----g~----~~~~lhg~~~~~eR~~v 615 (615)
++.|.+. +- -+..+||.|+.++-..|
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv 308 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRV 308 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhcc
Confidence 9999764 11 24789999998876543
No 96
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=5.7e-18 Score=187.67 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=167.0
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEE
Q psy12410 352 IQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVV 431 (615)
Q Consensus 352 ~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 431 (615)
...+++.++.+++-+|++|+||||||+..-..++...+ ..+.+++|+.|.|..|..+.+.+. ..++.+++
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvA---eel~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVA---EELGEKLG 123 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHH---HHhCCCcC
Confidence 34445556666777999999999999985444444432 346689999999988888855544 44444444
Q ss_pred EEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHH-HHHhcCCCCc
Q psy12410 432 CVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMR-IIDNVRPDRQ 509 (615)
Q Consensus 432 ~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~-i~~~~~~~~q 509 (615)
...|.....+.. ......|-|+|.|.|+..+..+ ..|+.+++||||||| +-++.+|.-.+.+ ++...+++.+
T Consensus 124 ~~VGY~iRfe~~--~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 124 ETVGYSIRFESK--VSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred ceeeEEEEeecc--CCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 444443333332 1234789999999999999876 569999999999999 6777666655544 4666777899
Q ss_pred EEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEe-cChhH-HHHHHHHHHhc--cCCCCcEEEEeCCcch
Q psy12410 510 TVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV-LDEEQ-KMLKLLELLGI--YQDQGSVIVFVDKQEN 585 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-~~~~~-k~~~l~~~l~~--~~~~~~~LIF~~s~~~ 585 (615)
+|+||||+.. +.|...|.+.|+ +.+.+..++ |..+|.. ..... -...+...+.. ....|.+|||.+.+.+
T Consensus 198 iIimSATld~--~rfs~~f~~apv-i~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPV-IEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCE-EEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 9999999954 556665555666 566655543 4444422 22222 22223333322 2347899999999999
Q ss_pred HHHHHHHhhc----CCCcEEEEcCCCChhhhhcC
Q psy12410 586 ADSLLFHSMD----PCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 586 a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~v 615 (615)
...++..|.+ ..+.+..+||.|+..+-..|
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv 305 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRV 305 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhh
Confidence 9999999987 35889999999999886543
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.3e-18 Score=187.00 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|.-+--++.. .-|+.++||.|||++|.+|++.+++. |..|.||+|+..||.|..+++..++..+|
T Consensus 82 ~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 677777655444444 45999999999999999999987754 44599999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC-Cc--ccCCCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG-RV--TNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~-~~--~~l~~~~~lVvDEah~~~ 489 (615)
+.+.+++++.+..... .. -+++|+++||+.| .++|..+-. .. .-...+.++||||||.++
T Consensus 152 lsv~~i~~~~~~~~r~-~~-Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 152 LTVGINVAGLGQQEKK-AA-YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CeEEEecCCCCHHHHH-hc-CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9999999988763321 11 2599999999999 888876521 00 113778999999999776
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=3.9e-17 Score=176.09 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=140.8
Q ss_pred EEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---H
Q psy12410 367 IGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---I 443 (615)
Q Consensus 367 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~ 443 (615)
|+.|+||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.++..+ +..+.+++|+.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 4689999999999876554443 2 36689999999999999988888753 5678889998866544 3
Q ss_pred HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC---c---HHHHHHHHHhcCCCCcEEEEecc
Q psy12410 444 SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG---F---EPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 444 ~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~---~---~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
..+..| ++|||+|+..|. ..+.++++|||||+|.....+ . ...+. ++.....+.++|++|||
T Consensus 70 ~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SAT 138 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSAT 138 (505)
T ss_pred HHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCC
Confidence 344444 799999987652 347789999999999765332 1 11222 23333457889999999
Q ss_pred CChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHH----HHHHHHHHh-ccCCCCcEEEEeCCcch------
Q psy12410 517 FPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQK----MLKLLELLG-IYQDQGSVIVFVDKQEN------ 585 (615)
Q Consensus 517 ~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~~l~-~~~~~~~~LIF~~s~~~------ 585 (615)
++.+. +....-+....+...............++......+ ...|++.+. .+..++++|||+|++..
T Consensus 139 Psles--~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C 216 (505)
T TIGR00595 139 PSLES--YHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLC 216 (505)
T ss_pred CCHHH--HHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEh
Confidence 76543 333222222222222111111111122222221111 123344443 34456789999888754
Q ss_pred ------------------------------------------------------HHHHHHHhhcC--CCcEEEEcCCCCh
Q psy12410 586 ------------------------------------------------------ADSLLFHSMDP--CLEFLPLPAGITR 609 (615)
Q Consensus 586 ------------------------------------------------------a~~l~~~L~~~--g~~~~~lhg~~~~ 609 (615)
.+.+.+.|.+. ++++..+|+++++
T Consensus 217 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~ 296 (505)
T TIGR00595 217 RSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296 (505)
T ss_pred hhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccccc
Confidence 47778888775 7889999999987
Q ss_pred hhh
Q psy12410 610 FIW 612 (615)
Q Consensus 610 ~eR 612 (615)
..+
T Consensus 297 ~~~ 299 (505)
T TIGR00595 297 RKG 299 (505)
T ss_pred Ccc
Confidence 654
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.77 E-value=2.1e-17 Score=191.33 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHH----c-CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIM----S-GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
..|+++|..||..+. . .+.+|++++||||||.+++. ++..++.. ....+||||||+.+|+.|+...|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 368999999998876 2 46899999999999998544 34444433 2356899999999999999998888
Q ss_pred hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC--CcccCCCccEEEEcccccccc---------
Q psy12410 422 FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG--RVTNLRRVTYIVLDEADRMFD--------- 490 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~l~~~~~lVvDEah~~~~--------- 490 (615)
+....+..+..+++....... .......|+|||++.|...+..... ....+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 743222122222221111111 1123479999999999776543211 113467889999999998631
Q ss_pred C------CcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 491 M------GFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 491 ~------~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
. ++...+..++.++. ...|+||||+..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r 596 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPAL 596 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCcc
Confidence 0 12467788888763 468999999964
No 100
>KOG0948|consensus
Probab=99.76 E-value=6.8e-18 Score=176.90 Aligned_cols=228 Identities=23% Similarity=0.255 Sum_probs=170.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..+.|+|..||..|-++..+++.|-|.+|||.++-.+|...+ .+..+|||..|-.+|.+|-|+++..-+..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 478999999999999999999999999999999888777776 34668999999999999999998877664
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
|+..+|+.... ..+..+|+|.+.|..+|..++ .-++.+.+||+||+|.|-|...+-.+..-+-.+++
T Consensus 199 ---VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 199 ---VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred ---cceeecceeeC-------CCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEeccc
Confidence 45566665433 338899999999999999875 44788999999999999887655555555566788
Q ss_pred CCcEEEEeccCChHHHHHHHHHc---CCCEEEEECCcccccCCeEEEEE---------ecCh-----hHHHHHHHHHHhc
Q psy12410 507 DRQTVMFSATFPRQMEALARRIL---NKPIEIQVGGRSVVCKEVEQHVI---------VLDE-----EQKMLKLLELLGI 569 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~---~~p~~i~~~~~~~~~~~i~~~~~---------~~~~-----~~k~~~l~~~l~~ 569 (615)
+...|++|||+|+. .+|+.|++ ..|.+|...+ +.+..++|++. ++++ ++.+...+..|..
T Consensus 266 ~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred cceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 89999999999987 56888877 3566555443 33333444322 1221 1222222222211
Q ss_pred c-------------------------------------CCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 570 Y-------------------------------------QDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 570 ~-------------------------------------~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
. ....+||||+-++.+|+.+|-.|.+..++
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN 409 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFN 409 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCC
Confidence 0 11358999999999999999999876654
No 101
>KOG0923|consensus
Probab=99.76 E-value=1e-17 Score=173.61 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
..+++-.+++.+|..++-+||.|.||||||.. +|- +|....- ...|.++-|..|.|..|+.+. .+++..+|
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaGy--tk~gk~IgcTQPRRVAAmSVA---aRVA~EMg 335 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAGY--TKGGKKIGCTQPRRVAAMSVA---ARVAEEMG 335 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhccc--ccCCceEeecCcchHHHHHHH---HHHHHHhC
Confidence 35667778888888888899999999999998 332 2322210 123455999999999999984 44555566
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHHHHHhcCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~ 506 (615)
++.+--.|.....+.+.. ...-|-++|.|+|+..+... .+|.++++||||||| +.+..+.+..+.+-+..++|
T Consensus 336 vkLG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred cccccccceEEEeccccC--cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 666555565555555443 23678899999999888765 679999999999999 77877777777777888899
Q ss_pred CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHH---HHhccCCCCcEEEEeCCc
Q psy12410 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLE---LLGIYQDQGSVIVFVDKQ 583 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~---~l~~~~~~~~~LIF~~s~ 583 (615)
+..+|+.|||+. .+.|...|-..|| +.+++.-++ |..+|...++.+.+...+. .|+..++.|.+|||...+
T Consensus 410 dLKllIsSAT~D--AekFS~fFDdapI-F~iPGRRyP---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 410 DLKLLISSATMD--AEKFSAFFDDAPI-FRIPGRRYP---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred cceEEeeccccC--HHHHHHhccCCcE-EeccCcccc---eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 999999999994 3556555555666 455555443 4455555555444433333 233445678999999999
Q ss_pred chHHHHHHHhhc---------CCCcEEEEcCCCChhhh
Q psy12410 584 ENADSLLFHSMD---------PCLEFLPLPAGITRFIW 612 (615)
Q Consensus 584 ~~a~~l~~~L~~---------~g~~~~~lhg~~~~~eR 612 (615)
++.+.....|.. ..+-+..||+.++....
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQ 521 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQ 521 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHH
Confidence 998887777754 24567889999987654
No 102
>KOG0947|consensus
Probab=99.76 E-value=2.8e-17 Score=176.45 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|..+|++||-++..|..|++.|+|.+|||+++-.+|.... .++.+++|..|-++|.+|-++.|+.-+...
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhcccc
Confidence 489999999999999999999999999999998766554332 457789999999999999988888876644
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
| .++|+... ...+.++|+|.+.|..+|.++. .-++++++||+||+|.+.|...+-.+..++-.++.
T Consensus 368 g----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrga---dliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 368 G----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred c----eeecceee-------CCCcceEeehHHHHHHHHhccc---chhhccceEEEeeeeecccccccccceeeeeeccc
Confidence 3 78887743 3448999999999999999874 34688999999999999988877888888889999
Q ss_pred CCcEEEEeccCChHHHHHHHHHc
Q psy12410 507 DRQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
++++|++|||.|+.. +|+.|+.
T Consensus 434 HV~~IlLSATVPN~~-EFA~WIG 455 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTL-EFADWIG 455 (1248)
T ss_pred cceEEEEeccCCChH-HHHHHhh
Confidence 999999999999874 4888775
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.6e-16 Score=172.69 Aligned_cols=249 Identities=22% Similarity=0.275 Sum_probs=174.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH
Q psy12410 337 ILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG 416 (615)
Q Consensus 337 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 416 (615)
+.+.+.+.....|+.+|.-....++.|+..-++||||.|||+--++..+... ..|.+++||+||..|+.|++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a--------~kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA--------KKGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH--------hcCCeEEEEecCHHHHHHHH
Confidence 3344555544499999999999999999999999999999986554444332 34688999999999999999
Q ss_pred HHHHHhhhhcC-cEEEE-EEcCCCh---hHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 417 KEAKKFTKSLG-LRVVC-VYGGTGI---SEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 417 ~~~~~~~~~~~-~~~~~-~~g~~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
+.+.+|+...+ +.+.+ +++.... .+....+.+| .+|+|+|.+-|..-+..- .. -.+++|+||.+|.++-
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEEEccHHHHHh
Confidence 99999998776 44444 4444333 3345556655 999999987776554431 11 3588999999998774
Q ss_pred C-----------CcHHH-------HHHHHHhc------------------------CCCCcEEEEeccCChH--HHHHHH
Q psy12410 491 M-----------GFEPQ-------VMRIIDNV------------------------RPDRQTVMFSATFPRQ--MEALAR 526 (615)
Q Consensus 491 ~-----------~~~~~-------~~~i~~~~------------------------~~~~q~l~~SAT~~~~--~~~~~~ 526 (615)
. ||... +..+...+ ....++|+.|||..+. -..+++
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 2 22221 11111111 1235789999998653 234555
Q ss_pred HHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCC---cchHHHHHHHhhcCCCcEEEE
Q psy12410 527 RILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDK---QENADSLLFHSMDPCLEFLPL 603 (615)
Q Consensus 527 ~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s---~~~a~~l~~~L~~~g~~~~~l 603 (615)
.+++ +.++.......+|...++..+. ...+++++..+.. -.|||++. .+.|++|+++|+..|+++..+
T Consensus 298 eLlg----FevG~~~~~LRNIvD~y~~~~~---~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 298 ELLG----FEVGSGGEGLRNIVDIYVESES---LEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred HHhC----CccCccchhhhheeeeeccCcc---HHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 5554 5566666666777777665533 4445566666644 37999999 999999999999999999999
Q ss_pred cCCC
Q psy12410 604 PAGI 607 (615)
Q Consensus 604 hg~~ 607 (615)
|+..
T Consensus 369 ~a~~ 372 (1187)
T COG1110 369 HAEK 372 (1187)
T ss_pred eccc
Confidence 9863
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.8e-16 Score=172.60 Aligned_cols=130 Identities=24% Similarity=0.291 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|.-+.-++..|+ |+.+.||+|||+++.+|++...+ .|..|-|++||..||.|-++.+..++..+|
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al--------~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL--------TGKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH--------cCCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 78888888777776776 99999999999999999988774 466799999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHH-HHHHhcCC---CcccCCCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMI-DMLAANSG---RVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~-~~l~~~~~---~~~~l~~~~~lVvDEah~~~ 489 (615)
+.++++.|+....+.. ... .++|+++|..-|- ++|..+-. ...-.+.+.+.||||+|.++
T Consensus 150 l~vg~i~~~~~~~~r~-~~y-~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 150 LTVGLNLNSMSPDEKR-AAY-NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred CeEEEeCCCCCHHHHH-HHh-cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999887655543 333 3899999987762 33332210 11124678899999999765
No 105
>KOG0924|consensus
Probab=99.72 E-value=6.2e-17 Score=168.07 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.....+.+++..|-.++-+|+++.||||||... .++++.. ....+..+.|..|.|..|..++ +.++..++
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl----~QyL~ed---GY~~~GmIGcTQPRRvAAiSVA---krVa~EM~ 425 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQL----AQYLYED---GYADNGMIGCTQPRRVAAISVA---KRVAEEMG 425 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhh----HHHHHhc---ccccCCeeeecCchHHHHHHHH---HHHHHHhC
Confidence 445667777888888888999999999999983 3333322 1245668899999999999984 44555566
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHHHHHhcCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~ 506 (615)
..+++-.|.....+.... ....|-++|.|.|+...... ..|..+++||+|||| +-++.+....+.+.+-.-+.
T Consensus 426 ~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred CccccccceEEEeeecCC--CceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 666666665555544333 23678899999998766543 568899999999999 66666655555555555567
Q ss_pred CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHH-H--hccCCCCcEEEEeCCc
Q psy12410 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLEL-L--GIYQDQGSVIVFVDKQ 583 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~-l--~~~~~~~~~LIF~~s~ 583 (615)
+.++|++|||+ +...|+..|.+.|. +++.+..+++ ...+...+.++...+.+.. + +.....|.+|||.+.+
T Consensus 500 dlKliVtSATm--~a~kf~nfFgn~p~-f~IpGRTyPV---~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 500 DLKLIVTSATM--DAQKFSNFFGNCPQ-FTIPGRTYPV---EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred cceEEEeeccc--cHHHHHHHhCCCce-eeecCCccce---EEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 89999999999 45667776665665 6666666543 3444444444444443333 2 2334568899999999
Q ss_pred chHHHHHHHhhc----------CCCcEEEEcCCCChh
Q psy12410 584 ENADSLLFHSMD----------PCLEFLPLPAGITRF 610 (615)
Q Consensus 584 ~~a~~l~~~L~~----------~g~~~~~lhg~~~~~ 610 (615)
+.++..+..+.. .++.++.|++.|++.
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 876655555432 167899999999875
No 106
>KOG0950|consensus
Probab=99.71 E-value=6.8e-17 Score=174.81 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=146.3
Q ss_pred CCHHHHH-HHHHCCCCCCCHHHHHHH--HHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 333 VSKKILD-ALKKQNYEKPTPIQAQAI--PAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 333 l~~~l~~-~l~~~~~~~~~~~Q~~~i--~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
+++.+.. .....|+..++.||..++ +.++.++|+|+.+||+.|||+++-+.++..++.. ...+++++|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 4444444 445669999999999998 6688999999999999999999999999888765 45699999999
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 410 ELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 410 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
..+..-...+..|...+|+.+-+++|..+..... +...+.|||.++-..++...- ..-.+..+.+|||||.|.++
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~li-e~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLI-EQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHH-hcCCccccCcEEEeeeeeee
Confidence 9999999999999999999999988766544332 226899999988765554321 11347789999999999999
Q ss_pred cCCcHHHHHHHHHhc-----CCCCcEEEEeccCChHHHHHHHHHcCCCEE
Q psy12410 490 DMGFEPQVMRIIDNV-----RPDRQTVMFSATFPRQMEALARRILNKPIE 534 (615)
Q Consensus 490 ~~~~~~~~~~i~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~ 534 (615)
+.+....+..++..+ ....|+|+||||+++ ..++..++.+-++
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y 402 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVY 402 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCC--hHHHHHHhhhhhe
Confidence 988777777766544 445789999999987 4566666665443
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=1.8e-16 Score=178.75 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHcC---C-CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIMSG---R-DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~---~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.+++.|..++..++.. . .+++.||||+|||++.+++++..+... ....++++++.|++.++.++++.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 4489999999888743 4 788999999999999999888776542 1258899999999999999999999877
Q ss_pred hhcCcEEEEEEcCCChhHHHHH-----H---------hcCCcEEEEChHHHHHHHHhcCCCc-ccCCCccEEEEcccccc
Q psy12410 424 KSLGLRVVCVYGGTGISEQISE-----L---------KRGAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYIVLDEADRM 488 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~-----l---------~~~~~Iiv~Tp~~l~~~l~~~~~~~-~~l~~~~~lVvDEah~~ 488 (615)
...++....++|.....-.... + .....++++||..+........... ..+-..+++|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6554333322332211111000 0 0013555666655544222111111 00123468999999987
Q ss_pred ccCCcHHHHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCccc---ccCCeEEEEEe-cChhHHHHHH
Q psy12410 489 FDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSV---VCKEVEQHVIV-LDEEQKMLKL 563 (615)
Q Consensus 489 ~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~---~~~~i~~~~~~-~~~~~k~~~l 563 (615)
.+......+..++..+ ..+..+|++|||+|+.+...+..++.+...+....... ....+.+.... +.........
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 7553344555554444 34678999999999999999998887665444332100 00111111100 0011001122
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.........+++++|.|||+..|.+++..|+..+.++.+|||.+...+|..
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ 481 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREE 481 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHH
Confidence 222334445789999999999999999999998878999999999999974
No 108
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=5.7e-16 Score=138.77 Aligned_cols=144 Identities=36% Similarity=0.587 Sum_probs=111.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
+++++.++||+|||.+++..+...... ...+++||++|+..|+.|+...+..+... ++.+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999988888776643 23678999999999999999999888765 67788887776666555
Q ss_pred HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 444 SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 444 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
.....+.+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4455679999999999988776542 2356788999999998876554443333344456678899999996
No 109
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.68 E-value=9.7e-15 Score=141.21 Aligned_cols=230 Identities=17% Similarity=0.205 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
++++.|+.+-..++ +..++|+.|-||+|||.. +...+..++. .|..|.|..|....|..++..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHhh
Confidence 78999988766654 668999999999999997 4455555554 48889999999999999999988876
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHh
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 503 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 503 (615)
.. +.+.++||+....-. ..++|||.-.|+.+-. .++++||||+|.+.-.....-...+-..
T Consensus 169 ~~--~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 169 SN--CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred cc--CCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----------hccEEEEeccccccccCCHHHHHHHHHh
Confidence 63 567899998743322 7899999888876654 3679999999987633222222333344
Q ss_pred cCCCCcEEEEeccCChHHHHHHHHHcCCCE-EEEECCcccccCCeEEEEEecChhHHHH-------HHHHHHhcc-CCCC
Q psy12410 504 VRPDRQTVMFSATFPRQMEALARRILNKPI-EIQVGGRSVVCKEVEQHVIVLDEEQKML-------KLLELLGIY-QDQG 574 (615)
Q Consensus 504 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~-~i~~~~~~~~~~~i~~~~~~~~~~~k~~-------~l~~~l~~~-~~~~ 574 (615)
.....-+|.+|||++..++.-+ ....+ .+.+...--..+-+.-.++.+..-.|.. .|...|... ..+.
T Consensus 230 rk~~g~~IylTATp~k~l~r~~---~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKI---LKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred hcccCceEEEecCChHHHHHHh---hhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 4556679999999997755433 33222 2222221111111111222333322222 455555533 3456
Q ss_pred cEEEEeCCcchHHHHHHHhhc-CCC-cEEEEcCCC
Q psy12410 575 SVIVFVDKQENADSLLFHSMD-PCL-EFLPLPAGI 607 (615)
Q Consensus 575 ~~LIF~~s~~~a~~l~~~L~~-~g~-~~~~lhg~~ 607 (615)
++|||++++...+.++..|+. .++ .+.++|+.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d 341 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED 341 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC
Confidence 999999999999999999954 443 557888753
No 110
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.68 E-value=3.7e-15 Score=169.09 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..|.|+|..++..++.. ..+|+...+|.|||+.+.+.+...++. +...++|||||+ .|+.||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 37999999998777643 478999999999999876665554433 234569999997 78999988886543
Q ss_pred hcCcEEEEEEcCCChhHHH--HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC--cHHHHHHH
Q psy12410 425 SLGLRVVCVYGGTGISEQI--SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEPQVMRI 500 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~--~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i 500 (615)
++.+.++.++....... .......+++|||.+.|...-... ....-..+++|||||||++-... -...+..+
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~--~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRL--EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHH--HHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 45555544332111000 011123689999988776411000 00112468899999999986211 11112222
Q ss_pred HHhcCCCCcEEEEeccCC
Q psy12410 501 IDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 501 ~~~~~~~~q~l~~SAT~~ 518 (615)
.........+|++|||+-
T Consensus 299 ~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPE 316 (956)
T ss_pred HHHhhccCCEEEEEcCcc
Confidence 111112345899999974
No 111
>KOG0926|consensus
Probab=99.67 E-value=8.5e-16 Score=162.31 Aligned_cols=225 Identities=20% Similarity=0.238 Sum_probs=136.0
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEE--
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRV-- 430 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~-- 430 (615)
.++++.+|..+--+||||.||||||+..--.++.+-+.+ ....++..+-|..|+|..|..+.+....-+..++-.|
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s--~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFAS--EQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCC--ccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 344556666666699999999999998222222222222 2223456899999999999888655443333233333
Q ss_pred EEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCC----cHHHHHHHHHhcC
Q psy12410 431 VCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMG----FEPQVMRIIDNVR 505 (615)
Q Consensus 431 ~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~----~~~~~~~i~~~~~ 505 (615)
.+-|.|+ +.....|.++|.|.|+..+... +.|..++.||||||| +-.+.+ .+..+..+-....
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2334333 2223799999999999999876 678999999999999 433332 2222222222222
Q ss_pred C------CCcEEEEeccCChHHHHHHHH--Hc-CCCEEEEECCcccccCCeEEEEEec---ChhHHHHHHHHHHhccCCC
Q psy12410 506 P------DRQTVMFSATFPRQMEALARR--IL-NKPIEIQVGGRSVVCKEVEQHVIVL---DEEQKMLKLLELLGIYQDQ 573 (615)
Q Consensus 506 ~------~~q~l~~SAT~~~~~~~~~~~--~~-~~p~~i~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~~l~~~~~~ 573 (615)
. ...+|+||||+ .+.+|... ++ .-|-.+.+....+++ ..++..- ++-.-...-.-.|+...+.
T Consensus 407 ke~~~~kpLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred hhhcccCceeEEEEeeeE--EecccccCceecCCCCceeeeecccCce---EEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 2 45699999998 34444421 12 223345555554432 2222211 2222222222234444577
Q ss_pred CcEEEEeCCcchHHHHHHHhhcC
Q psy12410 574 GSVIVFVDKQENADSLLFHSMDP 596 (615)
Q Consensus 574 ~~~LIF~~s~~~a~~l~~~L~~~ 596 (615)
|-+|||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhh
Confidence 88999999999999999999874
No 112
>KOG0925|consensus
Probab=99.66 E-value=1.6e-15 Score=152.27 Aligned_cols=258 Identities=21% Similarity=0.263 Sum_probs=173.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+..|..+++++.-...+++..-...+..+...+..+.+++-++++|.||||||...--.++.+.+.. ...|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 5567778888888888776544445666677778888899999999999999997544444444332 245899
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
..|.|..|+++ ..+++..+++.++--.|.....+.+..-. .-+-+||.++|+.....+ ..|..+.+||+||
T Consensus 97 TQprrvaamsv---a~RVadEMDv~lG~EVGysIrfEdC~~~~--T~Lky~tDgmLlrEams~----p~l~~y~viiLDe 167 (699)
T KOG0925|consen 97 TQPRRVAAMSV---AQRVADEMDVTLGEEVGYSIRFEDCTSPN--TLLKYCTDGMLLREAMSD----PLLGRYGVIILDE 167 (699)
T ss_pred cCchHHHHHHH---HHHHHHHhccccchhccccccccccCChh--HHHHHhcchHHHHHHhhC----cccccccEEEech
Confidence 99999999998 55666667777776666665555432211 233478999998776654 5589999999999
Q ss_pred cc-ccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHH-
Q psy12410 485 AD-RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLK- 562 (615)
Q Consensus 485 ah-~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~- 562 (615)
|| +.+..+..-.+.+-+..-+++.++|++|||+. ...|-..|.+.|+ +.+.+. ..++.+|..-.+.+.+..
T Consensus 168 ahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~--a~Kfq~yf~n~Pl-l~vpg~----~PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRNRPDLKLVVMSATLD--AEKFQRYFGNAPL-LAVPGT----HPVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccc--hHHHHHHhCCCCe-eecCCC----CceEEEecCCCChhHHHHH
Confidence 99 55544333333333334468999999999984 3445554545554 566541 234444433333333333
Q ss_pred --HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC---------CCcEEEEcC
Q psy12410 563 --LLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP---------CLEFLPLPA 605 (615)
Q Consensus 563 --l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~---------g~~~~~lhg 605 (615)
++-.|+.....|.+|||....++.+..+..+... .+.|+.+|-
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP 294 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP 294 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc
Confidence 3333444556889999999999998888887632 357788884
No 113
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=2.6e-15 Score=141.56 Aligned_cols=155 Identities=21% Similarity=0.158 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIMS-------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~-------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
+|+++|.+++..+.. ++.+++.+|||||||.+++..+..... ++||++|+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999883 689999999999999998765555541 79999999999999999997
Q ss_pred HhhhhcCcEEEE----------EEcC-CChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC--------CcccCCCccEEE
Q psy12410 421 KFTKSLGLRVVC----------VYGG-TGISEQISELKRGAEIIVCTPGRMIDMLAANSG--------RVTNLRRVTYIV 481 (615)
Q Consensus 421 ~~~~~~~~~~~~----------~~g~-~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--------~~~~l~~~~~lV 481 (615)
.+.......... .... ..............+|+++|...|......... .......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111000 0011 111111122233589999999999877654221 012245678999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
+||||++....- +..++. .+...+|+||||+.
T Consensus 152 ~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 999998763321 455555 45667999999986
No 114
>KOG0920|consensus
Probab=99.63 E-value=1.8e-14 Score=159.40 Aligned_cols=248 Identities=22% Similarity=0.272 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh-hhhcC
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF-TKSLG 427 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~-~~~~~ 427 (615)
.+..+.++|.+|.+.+.+++.|.||+|||+..-..++.+.... +....++|..|+|..|..+++.+..- +...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-----~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-----GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-----CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 4566888889999999999999999999998666667666544 24667999999999999887766542 23233
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc-ccccCCcHHHHHHHHHhcCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD-RMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~ 506 (615)
-.|+.-.+... .......+++||.|.|+..|..+ ..+..+++|||||+| +=.+.+|...+.+.+-..+|
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 33332222111 11123789999999999999864 668999999999999 66677888888888888889
Q ss_pred CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCC----------------eEEE------------EEecChhH
Q psy12410 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKE----------------VEQH------------VIVLDEEQ 558 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~----------------i~~~------------~~~~~~~~ 558 (615)
+.++|+||||+. .+.|..+|.+.|+ +.+.+..+.... ..+. +.....+-
T Consensus 319 ~LkvILMSAT~d--ae~fs~YF~~~pv-i~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLD--AELFSDYFGGCPV-ITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecc--hHHHHHHhCCCce-EeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999996 3444444444444 565554432211 0011 00001111
Q ss_pred HH---HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC-------CCcEEEEcCCCChhhhhc
Q psy12410 559 KM---LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP-------CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 559 k~---~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~-------g~~~~~lhg~~~~~eR~~ 614 (615)
.. ..|+..+......|.+|||.++..++..+++.|... .+-+..+|+.|+..+-+.
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~ 461 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQA 461 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHH
Confidence 12 223333334445789999999999999999999642 367889999999876543
No 115
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.62 E-value=2.8e-14 Score=147.63 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=151.2
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc-------------Cc------EEEEEEcCCChhHHHHHHhc--------
Q psy12410 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSL-------------GL------RVVCVYGGTGISEQISELKR-------- 448 (615)
Q Consensus 396 ~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-------------~~------~~~~~~g~~~~~~~~~~l~~-------- 448 (615)
+-..|+||||+|+|..|.++++.+..++... ++ ....-.....++.++..+..
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 3457999999999999999999998887651 10 00000011223333333333
Q ss_pred -----------------CCcEEEEChHHHHHHHHhcCC---CcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC-
Q psy12410 449 -----------------GAEIIVCTPGRMIDMLAANSG---RVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD- 507 (615)
Q Consensus 449 -----------------~~~Iiv~Tp~~l~~~l~~~~~---~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~- 507 (615)
.+|||||||.+|...+..... ....|++|+++|||.||.|+ |++|.++..++.+++..
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P 192 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQP 192 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCC
Confidence 259999999999999986322 22348999999999999777 99999999999988532
Q ss_pred -----------------------CcEEEEeccCChHHHHHHHHHcCCCEE---EEECCc-----ccccCCeEEEEEecC-
Q psy12410 508 -----------------------RQTVMFSATFPRQMEALARRILNKPIE---IQVGGR-----SVVCKEVEQHVIVLD- 555 (615)
Q Consensus 508 -----------------------~q~l~~SAT~~~~~~~~~~~~~~~p~~---i~~~~~-----~~~~~~i~~~~~~~~- 555 (615)
+|+|+||+...+++..+...+|.|... +..... ......|.|.+.-++
T Consensus 193 ~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 193 KKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDC 272 (442)
T ss_pred CCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecC
Confidence 899999999999999999999987632 222111 223455667665432
Q ss_pred ------hhHHHHHHHH-HHhc---cCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhh
Q psy12410 556 ------EEQKMLKLLE-LLGI---YQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFI 611 (615)
Q Consensus 556 ------~~~k~~~l~~-~l~~---~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~e 611 (615)
...++..... +|-. ....+.+||||++.-+-..|.++|++.++.++.||--.++.+
T Consensus 273 ~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~ 338 (442)
T PF06862_consen 273 SSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSD 338 (442)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHH
Confidence 1223333222 2222 234568999999999999999999999999999987766654
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.62 E-value=9e-15 Score=157.06 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=152.7
Q ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIM----SG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
..|+.+|..||..+. .| +.+|+++.||+|||.++ +.++..|++. +.-.+||||+.+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 478999999997765 44 45899999999999985 4455555543 4467899999999999999999888
Q ss_pred hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC--CcccCCCccEEEEccccccccCCcHHHHHH
Q psy12410 422 FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG--RVTNLRRVTYIVLDEADRMFDMGFEPQVMR 499 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~l~~~~~lVvDEah~~~~~~~~~~~~~ 499 (615)
+.+.. -.+..+.+..... .+.|.|+|.+.|...+..... ..+....+++|||||||+-. ......
T Consensus 238 ~~P~~-~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCc-cceeeeecccCCc--------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 87653 2333333221111 389999999999888775422 22335669999999999755 444446
Q ss_pred HHHhcCCCCcEEEEeccCChHHHHHHHHHc-CCCEEEEECC----------------------cccccCCe---------
Q psy12410 500 IIDNVRPDRQTVMFSATFPRQMEALARRIL-NKPIEIQVGG----------------------RSVVCKEV--------- 547 (615)
Q Consensus 500 i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~-~~p~~i~~~~----------------------~~~~~~~i--------- 547 (615)
|+.++..- ++++|||+...+..-...|+ +.|+..+--. .+..+...
T Consensus 305 I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 66666433 35559998765554444455 5554432110 01100000
Q ss_pred -----EEEE---------EecCh-hHHHHHHHHHHhc--cCC-CCcEEEEeCCcchHHHHHHHhhcC-----CCcEEEEc
Q psy12410 548 -----EQHV---------IVLDE-EQKMLKLLELLGI--YQD-QGSVIVFVDKQENADSLLFHSMDP-----CLEFLPLP 604 (615)
Q Consensus 548 -----~~~~---------~~~~~-~~k~~~l~~~l~~--~~~-~~~~LIF~~s~~~a~~l~~~L~~~-----g~~~~~lh 604 (615)
.+.+ ++... ......+.+.|.. ... .+|+||||.+..||+.+...|.+. |--|..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000 00001 1111223333433 111 469999999999999999999763 33466777
Q ss_pred CCCChhh
Q psy12410 605 AGITRFI 611 (615)
Q Consensus 605 g~~~~~e 611 (615)
|+-.+..
T Consensus 463 ~d~~~~q 469 (875)
T COG4096 463 GDAEQAQ 469 (875)
T ss_pred ccchhhH
Confidence 7766554
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.61 E-value=3.1e-14 Score=159.09 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHH----c------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIM----S------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
.++++|..|+..+. . .+..|++.+||||||++++..+...+ .. ...++||||+|+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh-----cCCCeEEEEECcHHHHHHHHH
Confidence 47889999998764 2 25789999999999998766554443 21 357899999999999999999
Q ss_pred HHHHhhhhcCcEEEEEEcCCChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHH
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQ 496 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~ 496 (615)
.+..+... +..+..+.......+.. ...|+|+|.+.|...+.........-..--+||+||||+... ..
T Consensus 312 ~f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~ 381 (667)
T TIGR00348 312 EFQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GE 381 (667)
T ss_pred HHHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hH
Confidence 99887531 11111122222222332 368999999999764432111111001112899999998652 23
Q ss_pred HHHHHHhcCCCCcEEEEeccCCh
Q psy12410 497 VMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 497 ~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
+..++...-++..+|+||||+-.
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcc
Confidence 44444333356779999999953
No 118
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.61 E-value=3.4e-14 Score=161.85 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.+.++|.+++..++ .|.+.|++..+|.|||+..+. ++.++.... +....+|||||. .|+.+|..+|.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999998875 678899999999999997543 344443221 223348999996 55578999999998
Q ss_pred hhcCcEEEEEEcCCChhHHHHH--H-hcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISE--L-KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~--l-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
. .+.++.++|.......... + ....+|+|+|++.+...... ..--.+.+|||||||++-+. ...+..+
T Consensus 243 p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 243 P--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred C--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 6 3567777765433222111 1 12479999999998764432 11235789999999998753 3344455
Q ss_pred HHhcCCCCcEEEEeccCCh-HHHHH---HH---------------HHcC-----------------CC------------
Q psy12410 501 IDNVRPDRQTVMFSATFPR-QMEAL---AR---------------RILN-----------------KP------------ 532 (615)
Q Consensus 501 ~~~~~~~~q~l~~SAT~~~-~~~~~---~~---------------~~~~-----------------~p------------ 532 (615)
+..+... ..+++|+|+-. .+.+| +. +|.. .|
T Consensus 314 lr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 5555433 35889999742 11111 11 0000 00
Q ss_pred -----E--EEEECCccc---------------cc-C-------Ce--------EEE---------------EEecChhHH
Q psy12410 533 -----I--EIQVGGRSV---------------VC-K-------EV--------EQH---------------VIVLDEEQK 559 (615)
Q Consensus 533 -----~--~i~~~~~~~---------------~~-~-------~i--------~~~---------------~~~~~~~~k 559 (615)
. .+.+.-... .. . ++ .+. -..+....|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 0 011100000 00 0 00 000 000122346
Q ss_pred HHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 560 MLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 560 ~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+..|..+|..+. .+.+|||||......+.|..+|...|+.+..|||+++..+|+.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~ 528 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDA 528 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 666666666443 3569999999999999999999999999999999999999975
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.8e-13 Score=147.57 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|.-+.-.++.|. |+.+.||.|||+++.+|++...+ .|..|.|++|+..||.|-++++..++..+|
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL--------~G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL--------QGRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH--------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 88999998888888775 88999999999999999887764 366799999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcC---CCcccCCCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANS---GRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~---~~~~~l~~~~~lVvDEah~~~ 489 (615)
+.+.++.++....+. .... .|+|+++|..-| .++|..+- ......+.+.++||||+|.++
T Consensus 148 Lsvg~i~~~~~~~er-r~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 148 LTVGWITEESTPEER-RAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CEEEEECCCCCHHHH-HHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999988765543 3334 399999998665 22222211 011224678899999999765
No 120
>KOG0385|consensus
Probab=99.52 E-value=6.6e-13 Score=140.56 Aligned_cols=251 Identities=19% Similarity=0.207 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.++++|.+.+.++. +|-|+|+...+|.|||+.. +.++.++.... ...|| .|||||-..|.+ |.++|++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~---~~~GP-fLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK---GIPGP-FLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc---CCCCC-eEEEeeHhhHHH-HHHHHHHhC
Confidence 68999999998875 6789999999999999973 44444443321 13466 699999999865 778899998
Q ss_pred hhcCcEEEEEEcCCChhHHH-HHHh--cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQI-SELK--RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~-~~l~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
+ ++++++++|...-...+ ..+. ...+|+|+|+++.+.--.. ..--.+.||||||||++-+.. ..+..+
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~-----lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF-----LKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH-----HhcCCceEEEechhhhhcchh--hHHHHH
Confidence 8 57889999876433222 2222 2489999999998764221 222357899999999998753 344456
Q ss_pred HHhcCCCCcEEEEeccCC-hHH------------------HHHHHHHcCC------------------------------
Q psy12410 501 IDNVRPDRQTVMFSATFP-RQM------------------EALARRILNK------------------------------ 531 (615)
Q Consensus 501 ~~~~~~~~q~l~~SAT~~-~~~------------------~~~~~~~~~~------------------------------ 531 (615)
+..+.... -|++|.|+- +.+ +.|-.+|-.+
T Consensus 312 lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 312 LREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 66555433 355666642 111 1111111100
Q ss_pred ------CEEEEECCc---------------------c---------------------------cccCCeEEEEEecChh
Q psy12410 532 ------PIEIQVGGR---------------------S---------------------------VVCKEVEQHVIVLDEE 557 (615)
Q Consensus 532 ------p~~i~~~~~---------------------~---------------------------~~~~~i~~~~~~~~~~ 557 (615)
-+.++++-. . .+.+....--..+...
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcC
Confidence 011111100 0 0000000000112234
Q ss_pred HHHHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.|+..|..+|..+. .+.+||||..-...-+.|-.++.-.||...-|.|.++-.+|..
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~ 528 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERED 528 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHH
Confidence 56666777776543 4679999999999999999999999999999999999999964
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=4.6e-13 Score=147.89 Aligned_cols=130 Identities=22% Similarity=0.203 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|..+--++.. .-|+.+.||.|||+++.+|++...+ .|..|.||+||..||.|-++++..++..+|
T Consensus 82 ~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al--------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL--------SGKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 677777665555544 4589999999999999999987764 366799999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~ 489 (615)
+.+.++.++.+..+... ... ++|+++|..-| .++|..+-. .......+.|+||||+|.++
T Consensus 152 l~v~~i~~~~~~~err~-~Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRA-AYA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CEEEEECCCCCHHHHHH-Hhc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999988876555433 333 99999999876 233332210 01124788999999999765
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.42 E-value=3.7e-12 Score=139.84 Aligned_cols=222 Identities=21% Similarity=0.280 Sum_probs=148.0
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIMSG----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..+++-|+.|+..|... ...++.|.||||||.+|+-.+-..+ . .|..+|||+|-..|..|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~-------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A-------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H-------cCCEEEEEeccccchHHHHHHHHHH
Confidence 46789999999999755 6789999999999999876665554 3 4788999999999999997777766
Q ss_pred hhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc---CC---
Q psy12410 423 TKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD---MG--- 492 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~---~~--- 492 (615)
+|.++.+++++.+..+... .+..| +.|||+|=..| ...|.++.+|||||=|--.- .+
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4578999999988776644 34444 89999993222 36689999999999994321 11
Q ss_pred cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-hhHHH-----HHHHHH
Q psy12410 493 FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-EEQKM-----LKLLEL 566 (615)
Q Consensus 493 ~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~k~-----~~l~~~ 566 (615)
+...+ .++..-..++++|+-|||+ .++.+.+..-+.+..+.+.............++.+. +.... ..|++.
T Consensus 336 hARdv-A~~Ra~~~~~pvvLgSATP--SLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 336 HARDV-AVLRAKKENAPVVLGSATP--SLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred CHHHH-HHHHHHHhCCCEEEecCCC--CHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHH
Confidence 22233 2333334578899999998 456666554444444444443332111122222221 11111 344454
Q ss_pred Hh-ccCCCCcEEEEeCCcchHHHHHHH
Q psy12410 567 LG-IYQDQGSVIVFVDKQENADSLLFH 592 (615)
Q Consensus 567 l~-~~~~~~~~LIF~~s~~~a~~l~~~ 592 (615)
+. .+..+.++|||+|.+..+-.|.+.
T Consensus 413 i~~~l~~geQ~llflnRRGys~~l~C~ 439 (730)
T COG1198 413 IRKTLERGEQVLLFLNRRGYAPLLLCR 439 (730)
T ss_pred HHHHHhcCCeEEEEEccCCccceeecc
Confidence 44 445577999999999988766443
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.40 E-value=1.2e-11 Score=136.29 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=98.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
|+ .|++.|.-+.-++ ....|+.+.||.|||+++.+|++...+ .|..|.||+++..||.+-++++..++.
T Consensus 74 G~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 74 GL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred CC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 44 5777776655444 456799999999999999999965543 366699999999999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
.+|+.++++.++.+..+.. ... .++|+++|..-| .+.+..... ....+.+.++||||+|.++
T Consensus 143 ~LGLsvg~i~~~~~~~err-~aY-~~DItYgTn~e~gFDyLRDnm~~~~~-~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERK-KNY-LKDITYVTNSELGFDYLRDNMALSLS-DVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HcCCceeeeCCCCChHHHH-Hhc-CCCCEecCCccccccchhhccCcChH-Hhhccccceeeeecchhhe
Confidence 9999999998877665543 333 389999998644 333321110 1124678899999999665
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.39 E-value=6.4e-12 Score=145.03 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=74.5
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHH----HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 334 SKKILDALKKQNYEKPTPIQAQAIP----AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 334 ~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
.+.+...+...||. ++|.|.+++. .+..++++++.||||+|||++|++|++.++. ++.++||.+||+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcH
Confidence 34566677777774 8999998776 4457899999999999999999999988763 245799999999
Q ss_pred HHHHHHHH-HHHHhhhhcC--cEEEEEEcC
Q psy12410 410 ELCMQIGK-EAKKFTKSLG--LRVVCVYGG 436 (615)
Q Consensus 410 ~La~q~~~-~~~~~~~~~~--~~~~~~~g~ 436 (615)
+|..|++. .+..+.+.++ ++++++.|+
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcc
Confidence 99999865 6666666554 777777764
No 125
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=4.4e-11 Score=131.58 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|++.|..+--++. ..-|+.+.||-|||+++.+|++...+. |..|-||+++..||..-.+++..+...+|
T Consensus 85 r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 67777766555554 445999999999999999998876643 55699999999999999999999999999
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
+.|+++.++....+.. ... .|+|+++|+.-| .+.+..... ......+.++||||+|.++
T Consensus 155 Ltvg~i~~~~~~~err-~aY-~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEERK-KNY-ACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHHH-Hhc-CCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 9999998877554432 223 499999999777 554443211 1235778899999999765
No 126
>KOG1123|consensus
Probab=99.34 E-value=1.4e-12 Score=131.80 Aligned_cols=242 Identities=13% Similarity=0.098 Sum_probs=146.5
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 347 EKPTPIQAQAIPAIMSG---RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~---~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
..++|+|..++..++.+ +..||+.|+|+|||++-+-++..- ...+||||..-..+.||...++.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 47899999999999954 688999999999999855444321 4459999999999999999999997
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC--Cc---ccCCCccEEEEccccccccCCcHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG--RV---TNLRRVTYIVLDEADRMFDMGFEPQVM 498 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~~---~~l~~~~~lVvDEah~~~~~~~~~~~~ 498 (615)
.-.+-.++.+++.... ....++.|+|+|+.++...-..... +. ..-..+.++|+||+|.+...-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 7666666666654421 1234689999998777432111100 00 112568899999999887655665555
Q ss_pred HHHHhcCCCCcEEEEeccCChHHHHHHH-HHcCCCEE---------------------EEECCc-c-----cccCCeEEE
Q psy12410 499 RIIDNVRPDRQTVMFSATFPRQMEALAR-RILNKPIE---------------------IQVGGR-S-----VVCKEVEQH 550 (615)
Q Consensus 499 ~i~~~~~~~~q~l~~SAT~~~~~~~~~~-~~~~~p~~---------------------i~~~~~-~-----~~~~~i~~~ 550 (615)
-+-.+. -|++|||+-.+-..+.. .||-.|-. +.-+-. . .....-...
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 555555 48999998644222211 11111100 000000 0 000000111
Q ss_pred EEecChhHHHHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 551 VIVLDEEQKMLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 551 ~~~~~~~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...+-+..|+....-++..+. .+.++|||....-.....|-.|.+ ..|+|..+|.+|-.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMK 579 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHH
Confidence 122223344444444444332 366999998876655554444433 35899999999854
No 127
>KOG0384|consensus
Probab=99.34 E-value=2e-12 Score=143.41 Aligned_cols=154 Identities=16% Similarity=0.268 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..++.+|...+..++ .+.++|+...+|.|||+.. +..|.+++... ...|| .|||||.-.+.. |..++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~---~~~gp-flvvvplst~~~-W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSL---QIHGP-FLVVVPLSTITA-WEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhh---hccCC-eEEEeehhhhHH-HHHHHHHH
Confidence 689999999998876 6789999999999999852 23333333221 13466 688999877654 66777777
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHh----c-----CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELK----R-----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF 493 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~----~-----~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~ 493 (615)
+ ++++++++|.......+.... . ..+++|+|++.++.-.... .--.+.+++|||||++-+.
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L-----~~i~w~~~~vDeahrLkN~-- 512 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAEL-----SKIPWRYLLVDEAHRLKND-- 512 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhh-----ccCCcceeeecHHhhcCch--
Confidence 6 578999999877666554432 1 2789999998886543321 1123668999999999854
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 494 EPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 494 ~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
...+...+..+.... -|++|.|+
T Consensus 513 ~~~l~~~l~~f~~~~-rllitgTP 535 (1373)
T KOG0384|consen 513 ESKLYESLNQFKMNH-RLLITGTP 535 (1373)
T ss_pred HHHHHHHHHHhcccc-eeeecCCC
Confidence 344444455554433 35566664
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=1.5e-10 Score=126.88 Aligned_cols=132 Identities=22% Similarity=0.259 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
|+ .|++.|.-+.-++..|+ |+.+.||-|||+++.+|++-..+. |..|-|++..--||..=.+++..+..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHH
Confidence 44 78888887776666664 899999999999999998765533 55588888889999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~ 489 (615)
.+|+.|+++..+....... ..+ .|+|+++|..-| .++|..+-. ...-.+.+.|.||||+|.++
T Consensus 145 fLGLsvG~i~~~~~~~~rr-~aY-~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKR-EAY-ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HhCCceeeeCCCCChHHHH-Hhc-cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999999998876655432 333 399999998766 334433211 01124678899999999765
No 129
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.30 E-value=3.7e-11 Score=130.98 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=58.3
Q ss_pred HHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh-hh--cCcEEEEEE
Q psy12410 358 PAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT-KS--LGLRVVCVY 434 (615)
Q Consensus 358 ~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~-~~--~~~~~~~~~ 434 (615)
..+..++.+++.|+||+|||++|++|++.++... .+.++||++||++|+.|++..+..+. +. ..++++++.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 4445778899999999999999999999887532 36789999999999999999998887 43 345666655
Q ss_pred c
Q psy12410 435 G 435 (615)
Q Consensus 435 g 435 (615)
|
T Consensus 85 G 85 (636)
T TIGR03117 85 G 85 (636)
T ss_pred C
Confidence 5
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.29 E-value=3.9e-11 Score=136.72 Aligned_cols=83 Identities=28% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH-HHHH
Q psy12410 345 NYEKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI-GKEA 419 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~ 419 (615)
|| .+++.|.+....|. .+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+ .+.+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 44 79999998665543 678899999999999999999988753 356899999999999999 4778
Q ss_pred HHhhhhcCcEEEEEEcCC
Q psy12410 420 KKFTKSLGLRVVCVYGGT 437 (615)
Q Consensus 420 ~~~~~~~~~~~~~~~g~~ 437 (615)
..+...+++.+.++.|+.
T Consensus 313 ~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred HHHHHhcCCcEEEEECCc
Confidence 888888888888877743
No 131
>KOG0949|consensus
Probab=99.28 E-value=1.6e-11 Score=133.06 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|..||...+..+-.+..++++|||.+|||.+-. .++..++.. .....||+++||.+|++|+...+..-+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 7899999999999999999999999999999743 344444433 4567899999999999999777765542211
Q ss_pred -cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 428 -LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 428 -~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
...+.+.|.....-++. .-.|+|+|+-|+-|..+|............+.+||+||+|.+..+.-..-+..++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 12222333322221111 1139999999999998887643233456889999999999998665344444555554
Q ss_pred CCcEEEEeccCChH
Q psy12410 507 DRQTVMFSATFPRQ 520 (615)
Q Consensus 507 ~~q~l~~SAT~~~~ 520 (615)
.+.+|++|||+.+.
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 46799999999763
No 132
>KOG0387|consensus
Probab=99.25 E-value=9.8e-11 Score=125.00 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.+.++|+.++.++. ++...|+...+|.|||+.. +..|..+..... . ...+|||||... ..||.+++..|+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k---~-~~paLIVCP~Ti-i~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK---L-TKPALIVCPATI-IHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc---c-cCceEEEccHHH-HHHHHHHHHHhC
Confidence 46799999999886 5667899999999999863 233333333211 1 245999999755 578999999998
Q ss_pred hhcCcEEEEEEcCCChh--------HHH-----HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 424 KSLGLRVVCVYGGTGIS--------EQI-----SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~--------~~~-----~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
.. ++|.+++|..... ... .....+..|+|+|+..|.-.- ....-..+.|+|+||.|+|-+
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~-----d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG-----DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC-----cccccccccEEEecCcccccC
Confidence 75 5778887755421 111 111224689999987774321 112234588999999999876
Q ss_pred C
Q psy12410 491 M 491 (615)
Q Consensus 491 ~ 491 (615)
.
T Consensus 352 p 352 (923)
T KOG0387|consen 352 P 352 (923)
T ss_pred C
Confidence 3
No 133
>KOG0951|consensus
Probab=99.24 E-value=4.2e-11 Score=132.84 Aligned_cols=226 Identities=23% Similarity=0.298 Sum_probs=149.8
Q ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH-Hhh
Q psy12410 346 YEKPTPIQAQAIPAIMS-GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK-KFT 423 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~~~ 423 (615)
|...+|+|.++++.+.+ +.++++.+|+|||||.|+.++++.- ....++++++|..+.+..++..+. +|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~---------~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP---------DTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC---------ccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 33458999999999874 5789999999999999988877751 456789999999999888876665 455
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-----cHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-----FEPQVM 498 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-----~~~~~~ 498 (615)
...|+.++.++|..+..- .+....+|+|+||..+-.+ . ....++++|+||+|.+.+.. ..-.+.
T Consensus 1212 ~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGVYGAVYEVICSMR 1280 (1674)
T ss_pred cccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h-------hhhhcceEeeehhhhhcccCCceEEEEeeHH
Confidence 566888888887765443 3334479999999998544 2 35678899999999877322 111266
Q ss_pred HHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC--h-hHHHH-H---HHHHHh-cc
Q psy12410 499 RIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD--E-EQKML-K---LLELLG-IY 570 (615)
Q Consensus 499 ~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~--~-~~k~~-~---l~~~l~-~~ 570 (615)
.|..++-+...++.+|..+.+. .++ +...+-.+...........+..++..+. . ...+. . .+.-+. ..
T Consensus 1281 ~ia~q~~k~ir~v~ls~~lana-~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1281 YIASQLEKKIRVVALSSSLANA-RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHHhheeEEEeehhhccc-hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 7777777788899999888753 334 2222222222222222233333332222 1 11111 1 122222 22
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhc
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMD 595 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~ 595 (615)
....+.+||++++++|..++..|..
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~ 1381 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVT 1381 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccch
Confidence 3467899999999999988877654
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.24 E-value=2.3e-11 Score=105.55 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
|.-.++-..+|+|||.-.+.-++...+. .+.++|||.|||.+|..+.+.++.. ++.+. .....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~---- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM---- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee----
Confidence 3446788999999999766656655543 3678999999999999987766433 33322 11110
Q ss_pred HHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc--CCCCcEEEEeccCChH
Q psy12410 443 ISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV--RPDRQTVMFSATFPRQ 520 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~~~q~l~~SAT~~~~ 520 (615)
.....+.-|-|+|...+...+... ..+.++++||+||||.+-... . ....++..+ .....+|++|||+|-.
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred -ccccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHH-H-hhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 022344778899999988877653 446789999999999643211 1 111122222 2335799999999865
Q ss_pred H
Q psy12410 521 M 521 (615)
Q Consensus 521 ~ 521 (615)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 3
No 135
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.20 E-value=4.3e-11 Score=122.11 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=92.3
Q ss_pred HHHHHHHHHH-------------cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q psy12410 352 IQAQAIPAIM-------------SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKE 418 (615)
Q Consensus 352 ~Q~~~i~~i~-------------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 418 (615)
+|..++..++ ..+.+|++..+|+|||++.+..+. ++...... .....+|||||. .+..|+..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 4777776653 346789999999999998654443 33332110 111249999999 777899999
Q ss_pred HHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH
Q psy12410 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM 498 (615)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~ 498 (615)
+.+++....+++..+.|...............+|+|+|++.+.............--.+.+|||||+|.+-+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 9999876567777766655122222222334899999999998110000000011134889999999998533 23333
Q ss_pred HHHHhcCCCCcEEEEeccCC
Q psy12410 499 RIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 499 ~i~~~~~~~~q~l~~SAT~~ 518 (615)
..+..+. ....+++|||+.
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 3444455 556788999974
No 136
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.1e-10 Score=114.22 Aligned_cols=73 Identities=25% Similarity=0.239 Sum_probs=58.4
Q ss_pred CCCHHHHHHHH----HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 348 KPTPIQAQAIP----AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 348 ~~~~~Q~~~i~----~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.|+|.|.+.+. .+..|.++|+.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455789999999999999999999999887654210 12358999999999999988777765
No 137
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.1e-10 Score=114.22 Aligned_cols=73 Identities=25% Similarity=0.239 Sum_probs=58.4
Q ss_pred CCCHHHHHHHH----HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 348 KPTPIQAQAIP----AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 348 ~~~~~Q~~~i~----~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.|+|.|.+.+. .+..|.++|+.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455789999999999999999999999887654210 12358999999999999988777765
No 138
>KOG0390|consensus
Probab=99.12 E-value=1.2e-08 Score=111.78 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHH---cC-------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIM---SG-------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~---~~-------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
.++|+|.+++.-+. .| ..+|+.-.+|+|||+. ++++++-++.+.+....--.+.|||+|. .|+.-|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 58999999998765 22 2467777899999998 4555666666533222222678999995 66688999
Q ss_pred HHHHhhhhcCcEEEEEEcCCCh-hHHHHHHh------cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGI-SEQISELK------RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~------~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
+|.+|.....+....++|+... +.....+. -...|++.+.+.+.+.+.. ..+..+++||+||.|++-+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCCCccc
Confidence 9999988667788888887763 11111111 1257888899999877664 5577899999999999875
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 491 MGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 491 ~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
. ...+...+..+...+ -|++|.|+
T Consensus 391 ~--~s~~~kaL~~l~t~r-RVLLSGTp 414 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKTPR-RVLLTGTP 414 (776)
T ss_pred h--hhHHHHHHHhcCCCc-eEEeeCCc
Confidence 4 344555555665554 46778885
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=2.4e-09 Score=119.40 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 428 (615)
|++.|.-.--++..| -|..+.||-|||+++.+|++-..+. |.-|-||+..--||..=.+++..++..+|+
T Consensus 139 ~ydVQLiGgivLh~G--~IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~flGL 208 (1025)
T PRK12900 139 PYDVQLIGGIVLHSG--KISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFHGL 208 (1025)
T ss_pred ccchHHhhhHHhhcC--CccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHhCC
Confidence 445554433334344 4899999999999999999776654 334677777788999989999999999999
Q ss_pred EEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 429 RVVCVYGGTGISEQISELKRGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 429 ~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
.|.|+..+.+.... ...+ .|||+++|..-| .+-+..... -.-.+.+.|.||||+|.++
T Consensus 209 tVg~i~~~~~~~~R-r~aY-~~DItYgTn~EfGFDYLRDnma~~~~-~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 209 SVGVILNTMRPEER-REQY-LCDITYGTNNEFGFDYLRDNMAGTPE-EMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeeeCCCCCHHHH-HHhC-CCcceecCCCccccccchhccccchh-hhhccCCceEEEechhhhh
Confidence 99999776554443 2223 499999997554 333222111 1124678899999999654
No 140
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.5e-09 Score=108.91 Aligned_cols=101 Identities=16% Similarity=0.025 Sum_probs=66.7
Q ss_pred CcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHh-ccCCCCcEEEEeCCcchH
Q psy12410 508 RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLG-IYQDQGSVIVFVDKQENA 586 (615)
Q Consensus 508 ~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~~~LIF~~s~~~a 586 (615)
.|+|++|||+.+.-.+.. -++-+.-.+-+.+..-+.| .+-+.......|+..+. ....+.++||-+-|+..|
T Consensus 387 ~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLlDP~i----evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLLDPEI----EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhc---cCceeEEeecCCCCCCCce----eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 689999999876322111 1122333333333322222 22233334445555554 345577999999999999
Q ss_pred HHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 587 DSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 587 ~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+.|.++|.+.|+++..+|++.+--+|-+|
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eI 488 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEI 488 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHH
Confidence 99999999999999999999999888653
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.07 E-value=1.6e-10 Score=124.03 Aligned_cols=149 Identities=25% Similarity=0.317 Sum_probs=98.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCe
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPM 401 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 401 (615)
..|+.+.. .++..+|.-....+|+|+|++||.+.+.| ...-+++.+|+|||+..+- +...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhh
Confidence 45665543 45556666666779999999999998865 2345566799999998543 444442 356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh-------------------HHH-HHH-----hcCCcEEEEC
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS-------------------EQI-SEL-----KRGAEIIVCT 456 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~-------------------~~~-~~l-----~~~~~Iiv~T 456 (615)
+|+|||+..|..|..+.+..-.. +.+....++++.... ..+ ..+ ..+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 99999999999999766654322 345544444422111 111 111 1246799999
Q ss_pred hHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 457 PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 457 p~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
++.+...-.... .-+..+++||+||||+.-
T Consensus 288 YQSl~~i~eAQe---~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 288 YQSLPRIKEAQE---AGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred ccchHHHHHHHH---cCCCCccEEEecchhccc
Confidence 999976655432 347789999999999864
No 142
>KOG1000|consensus
Probab=99.06 E-value=1.6e-08 Score=102.88 Aligned_cols=248 Identities=12% Similarity=0.137 Sum_probs=155.7
Q ss_pred CCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 346 YEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+..+.|+|.+.+...+ .|-.+|+...+|.|||+.++..+..+... .| .||+||...+ ..|.+.+.+|+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPAsvr-ftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPASVR-FTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecHHHh-HHHHHHHHHhcc
Confidence 3457899999886655 67789999999999999976555544433 33 7999997544 567788888877
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
... .+.++.++.... ..+.....|.|.++++|..+-.. ..-..+.+||+||.|.+-+.. ......++..+
T Consensus 266 s~~-pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dll 335 (689)
T KOG1000|consen 266 SIH-PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLL 335 (689)
T ss_pred ccc-ceEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhhhhHH
Confidence 543 355555554333 23334478999999988654432 222448899999999776543 23344444433
Q ss_pred CCCCcEEEEeccC-------------------ChHHHHHHHHHcCCC-EEEEECCccc----------------------
Q psy12410 505 RPDRQTVMFSATF-------------------PRQMEALARRILNKP-IEIQVGGRSV---------------------- 542 (615)
Q Consensus 505 ~~~~q~l~~SAT~-------------------~~~~~~~~~~~~~~p-~~i~~~~~~~---------------------- 542 (615)
..-..+|++|.|+ -+...+|+..||... +.+...-.+.
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344578888875 245667777777542 2111111110
Q ss_pred ----ccCCeEEEEEecChh----------------------H---------------HHHHHHHHHhc-----cCCCCcE
Q psy12410 543 ----VCKEVEQHVIVLDEE----------------------Q---------------KMLKLLELLGI-----YQDQGSV 576 (615)
Q Consensus 543 ----~~~~i~~~~~~~~~~----------------------~---------------k~~~l~~~l~~-----~~~~~~~ 576 (615)
.++.-.+.++.+... . |...+.+.|.. -.+..+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 111112222222200 0 01111222221 1235589
Q ss_pred EEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 577 IVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 577 LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
||||.-+...+.|-..+.+.++...-|.|..+..+|+
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ 532 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRT 532 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHH
Confidence 9999999999999999999999999999999998886
No 143
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.05 E-value=5.7e-09 Score=102.21 Aligned_cols=131 Identities=26% Similarity=0.338 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|++.|..++-++..|+ |+...||-|||++..+|++.+.+ .|..|-|++....||..=++++..|+..+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL--------~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL--------QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT--------TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH--------hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 388999988887776766 99999999999999888877764 36679999999999999999999999999
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHH-HHHHhcCCCc-c--cCCCccEEEEccccccc
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMI-DMLAANSGRV-T--NLRRVTYIVLDEADRMF 489 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~-~~l~~~~~~~-~--~l~~~~~lVvDEah~~~ 489 (615)
|+.+.+++++.+.... ..... ++|+++|...|. ++|..+.... . ....+.++||||||.++
T Consensus 146 Glsv~~~~~~~~~~~r-~~~Y~-~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEER-REAYA-ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHH-HHHHH-SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHH-HHHHh-CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999998875443 23332 899999998884 4454432111 1 14688999999999665
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.04 E-value=4.3e-09 Score=116.49 Aligned_cols=200 Identities=11% Similarity=0.064 Sum_probs=119.5
Q ss_pred cCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHh
Q psy12410 371 KTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELK 447 (615)
Q Consensus 371 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~ 447 (615)
-+|||||.+|+-.+-..+ ..|..+|||+|...|+.|+...++..+. +..+++++++.+..+. +..+.
T Consensus 168 ~~GSGKTevyl~~i~~~l--------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 168 LPGEDWARRLAAAAAATL--------RAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCCCcHHHHHHHHHHHHH--------HcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 369999999877666555 2377899999999999999888887653 2568889998876654 34455
Q ss_pred cC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc-C--CcHHHHH--HHHHhcCCCCcEEEEeccCChHH
Q psy12410 448 RG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-M--GFEPQVM--RIIDNVRPDRQTVMFSATFPRQM 521 (615)
Q Consensus 448 ~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~-~--~~~~~~~--~i~~~~~~~~q~l~~SAT~~~~~ 521 (615)
.| +.|||+|-..+ +..+.++.+|||||=|--.. . +...+.. .++.....+..+|+.|||++-+.
T Consensus 238 ~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 56 79999994333 36689999999999994321 1 1111222 22333345788999999986543
Q ss_pred HHHHHHHcCCCEEEEECCccc--ccCCeEEEEEecChh-------H----HHHHHHHHHhccCCCCcEEEEeCCcchHHH
Q psy12410 522 EALARRILNKPIEIQVGGRSV--VCKEVEQHVIVLDEE-------Q----KMLKLLELLGIYQDQGSVIVFVDKQENADS 588 (615)
Q Consensus 522 ~~~~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~~~~~-------~----k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~ 588 (615)
+..-.-+....+....... ..+.|. ++-.... . --..++..+.+.-..|++|||+|.+..+-.
T Consensus 308 --~~~~~~g~~~~~~~~~~~~~~~~P~v~--~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~ 383 (665)
T PRK14873 308 --QALVESGWAHDLVAPRPVVRARAPRVR--ALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPS 383 (665)
T ss_pred --HHHHhcCcceeeccccccccCCCCeEE--EEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCe
Confidence 3322222221111111110 111111 1111110 0 011344444433334499999999999887
Q ss_pred HHHHhh
Q psy12410 589 LLFHSM 594 (615)
Q Consensus 589 l~~~L~ 594 (615)
|++.=+
T Consensus 384 l~C~~C 389 (665)
T PRK14873 384 LACARC 389 (665)
T ss_pred eEhhhC
Confidence 765533
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.04 E-value=3.3e-09 Score=123.33 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH-HHHH
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK-EAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~-~~~~ 421 (615)
..++|-|.+.+..+. .+..+++.||||+|||++|++|++.+.. .++.++||-++|..|..|+.. .+-.
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-------~~~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-------KKEEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-------ccCCeEEEEcCCHHHHHHHHHhhHHH
Confidence 489999999766554 6788999999999999999999987653 236789999999999999865 2333
Q ss_pred hhhhc--CcEEEEEEc
Q psy12410 422 FTKSL--GLRVVCVYG 435 (615)
Q Consensus 422 ~~~~~--~~~~~~~~g 435 (615)
+.+.+ .++++++.|
T Consensus 329 L~~~~~~~~~~~~lKG 344 (928)
T PRK08074 329 LQKIFPFPVEAALLKG 344 (928)
T ss_pred HHHHcCCCceEEEEEc
Confidence 33322 456666665
No 146
>KOG0391|consensus
Probab=98.98 E-value=1.9e-09 Score=118.64 Aligned_cols=154 Identities=20% Similarity=0.299 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.++.||...+.++. .+-|.|+...+|.|||+. .|.+|.|+.+.. .+=||. ||||||-.+.+ |.-++++||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACee---gnWGPH-LIVVpTsviLn-WEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEE---GNWGPH-LIVVPTSVILN-WEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcc---cCCCCc-eEEeechhhhh-hhHHHhhhC
Confidence 57889999998875 445889999999999998 566777876653 222564 89999988765 667799999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhc---CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKR---GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~---~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
. ++++..+||...-......-+. .++|.|+++..+..-+.. +.-.+|.|+||||||++.++. ...+..+
T Consensus 689 P--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnfk-sqrWQAl 760 (1958)
T KOG0391|consen 689 P--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNFK-SQRWQAL 760 (1958)
T ss_pred C--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcchh-HHHHHHH
Confidence 8 5688888886532222222111 268889998887665553 334678999999999998653 3344444
Q ss_pred HHhcCCCCcEEEEeccC
Q psy12410 501 IDNVRPDRQTVMFSATF 517 (615)
Q Consensus 501 ~~~~~~~~q~l~~SAT~ 517 (615)
++ ++..+ .|+++.|+
T Consensus 761 ln-fnsqr-RLLLtgTP 775 (1958)
T KOG0391|consen 761 LN-FNSQR-RLLLTGTP 775 (1958)
T ss_pred hc-cchhh-eeeecCCc
Confidence 43 34333 46677774
No 147
>KOG0389|consensus
Probab=98.95 E-value=1.6e-09 Score=115.82 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
++-+||.-.+.++. .+-+.|+...+|.|||.. ++..+.++... +.+||. |||||.-.|-+ |..++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~----g~~gpH-LVVvPsSTleN-WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI----GNPGPH-LVVVPSSTLEN-WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc----CCCCCc-EEEecchhHHH-HHHHHHHhC
Confidence 58899999988864 456789999999999987 34455555443 245664 99999999865 778899999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhc----CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC--cHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEPQV 497 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~ 497 (615)
+. +.|.++||.......+..... +.+|+|+|+.....--... .+..-.++.|+|+||+|.+-++. .+.++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDR--sflk~~~~n~viyDEgHmLKN~~SeRy~~L 547 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDR--SFLKNQKFNYVIYDEGHMLKNRTSERYKHL 547 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHH--HHHHhccccEEEecchhhhhccchHHHHHh
Confidence 85 688899998765555544332 4899999986653211100 11123567899999999887765 45566
Q ss_pred HHHHHhcCCCCcEEEEeccCC
Q psy12410 498 MRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 498 ~~i~~~~~~~~q~l~~SAT~~ 518 (615)
+.|-+++ .|++|.|+-
T Consensus 548 M~I~An~-----RlLLTGTPL 563 (941)
T KOG0389|consen 548 MSINANF-----RLLLTGTPL 563 (941)
T ss_pred ccccccc-----eEEeeCCcc
Confidence 6665444 588888863
No 148
>KOG1002|consensus
Probab=98.91 E-value=1.9e-08 Score=102.22 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHcC-----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMSG-----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~-----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
-.+-|+|.+.+.++... ...|+...+|.|||+..+..++..+ .+...|||+|+.+| +||.++|..
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAl-mQW~nEI~~ 252 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVAL-MQWKNEIER 252 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHH-HHHHHHHHH
Confidence 36788999998887633 4568888999999998766555543 34449999999987 799999999
Q ss_pred hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCC----------cccCCCcc--EEEEccccccc
Q psy12410 422 FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGR----------VTNLRRVT--YIVLDEADRMF 489 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~----------~~~l~~~~--~lVvDEah~~~ 489 (615)
+..+ .+++.+++ |......+..+.+ +++|++|+..+-......... ...|.++. -|||||||.+.
T Consensus 253 ~T~g-slkv~~Yh-G~~R~~nikel~~-YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 253 HTSG-SLKVYIYH-GAKRDKNIKELMN-YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred hccC-ceEEEEEe-cccccCCHHHhhc-CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 9873 45555555 5555555666654 999999999998777653211 11144444 49999999987
Q ss_pred cCC--cHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 490 DMG--FEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 490 ~~~--~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
+.. ....+..+-... ..++|.|+-
T Consensus 330 ~R~snTArAV~~L~tt~-----rw~LSGTPL 355 (791)
T KOG1002|consen 330 DRQSNTARAVFALETTY-----RWCLSGTPL 355 (791)
T ss_pred cccccHHHHHHhhHhhh-----hhhccCCcc
Confidence 643 223333332222 366788864
No 149
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.89 E-value=1.3e-07 Score=105.06 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 557 EQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 557 ~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..++..|+..|..+ ..+.++||||+++..|+.|+..|...|++|..+||++++.+|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVE 483 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHH
Confidence 34455666666543 44678999999999999999999999999999999999988864
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.80 E-value=7.4e-08 Score=108.63 Aligned_cols=63 Identities=29% Similarity=0.279 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHH---cC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIM---SG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG 416 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~---~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 416 (615)
..+++-|.+.+..|. .+ +.+++.|+||+|||++|++|++.+... ++.+|||-+.|..|-.|+.
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHHH
Confidence 389999999776654 33 678899999999999999999877643 3667999999999999985
No 151
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.79 E-value=8.6e-08 Score=108.01 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=88.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH-----Hhhhh-c---CcEEEEEE
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK-----KFTKS-L---GLRVVCVY 434 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-----~~~~~-~---~~~~~~~~ 434 (615)
.++.+.++||+|||.+|+-.|+..... .+..++||+||+.++-..+.+.+. ..+.. + .+.+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 378899999999999988777655432 235679999999998888776655 12221 1 24444554
Q ss_pred cCC-------ChhHHHHHHhc-------CCcEEEEChHHHHHHHH--hc------CCCccc---CCC-ccEEEEcccccc
Q psy12410 435 GGT-------GISEQISELKR-------GAEIIVCTPGRMIDMLA--AN------SGRVTN---LRR-VTYIVLDEADRM 488 (615)
Q Consensus 435 g~~-------~~~~~~~~l~~-------~~~Iiv~Tp~~l~~~l~--~~------~~~~~~---l~~-~~~lVvDEah~~ 488 (615)
++. .....+..... ...|+|+|.++|..-.. .. .+.... +.. --+||+||+|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 432 11222222221 36899999998854211 00 000011 111 237999999998
Q ss_pred ccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 489 FDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 489 ~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
-.. ...+..| ..++|.+ +|.||||++.
T Consensus 214 ~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 542 2334444 6666665 6779999986
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.79 E-value=2.1e-07 Score=102.03 Aligned_cols=224 Identities=16% Similarity=0.167 Sum_probs=136.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 445 (615)
.++-+|+|||||.+.+- .+...++ ....++|+|..++.|+.++...++.. ++.-.+.|...... .
T Consensus 52 ~vVRSpMGTGKTtaLi~-wLk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~----~ 116 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIR-WLKDALK------NPDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDY----I 116 (824)
T ss_pred EEEECCCCCCcHHHHHH-HHHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccc----c
Confidence 57789999999998544 3333322 23678999999999999997777654 22111122211111 0
Q ss_pred Hh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc------HHHHHH-HHHhcCCCCcEEEEeccC
Q psy12410 446 LK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF------EPQVMR-IIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 446 l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~------~~~~~~-i~~~~~~~~q~l~~SAT~ 517 (615)
+. ...+-+++..+.|..+.. ..+.++++|||||+--.+..=| ...+.. +...+.....+|++-||+
T Consensus 117 i~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 117 IDGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ccccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 10 124677777777765532 3467799999999986653212 222222 233445667799999999
Q ss_pred ChHHHHHHHHHcC-CCEEEEECCcccccCCeEEEEEe-----------------------------------cChhHHHH
Q psy12410 518 PRQMEALARRILN-KPIEIQVGGRSVVCKEVEQHVIV-----------------------------------LDEEQKML 561 (615)
Q Consensus 518 ~~~~~~~~~~~~~-~p~~i~~~~~~~~~~~i~~~~~~-----------------------------------~~~~~k~~ 561 (615)
....-+|+..+.. .++.+.+.....+...-.+.++. ....+...
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 9998888888654 34554443211100000000000 00011222
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChh
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRF 610 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~ 610 (615)
..-.++..+..+.++-|||.|...++.+++.....+.++..++|.-+..
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE 319 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc
Confidence 3344445555677888999999999999999988899999998876554
No 153
>KOG0386|consensus
Probab=98.78 E-value=1.4e-08 Score=111.34 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
++.+||...+.++. ++-|.|+...||.|||.+. +.++.+++... ...|| .|||||+-.|.+ |..++..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 78899999998876 3357899999999999974 34444555442 24567 599999999977 556677776
Q ss_pred hhcCcEEEEEEcCCChh-HHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 424 KSLGLRVVCVYGGTGIS-EQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~-~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
.. +..+.+.|..... .....+.. .++|+++|++.++.--. +..--++.|+||||.|+|.+
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~-----lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKA-----LLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHH-----HHhccCCcceeecccccccc
Confidence 63 3444443332211 11222332 38999999988865110 11123467999999999975
No 154
>KOG0392|consensus
Probab=98.76 E-value=8.4e-08 Score=107.12 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHH---cC-CCEEEEccCCCchhHHh-HHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 348 KPTPIQAQAIPAIM---SG-RDLIGIAKTGSGKTVAF-VLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~---~~-~~~i~~a~TGsGKT~~~-~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.++.||++.+.++. .+ -+.|+|..+|-|||+.. ++.+..|.........-+..-.|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46788999998864 33 47899999999999964 3444444433111111122238999995 7788899999999
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHH
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID 502 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~ 502 (615)
+.. +++..+.|+-........-.+..+|+|++++.+..-+.. ..-..+.|+|+||-|.|-+. ...+.+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 886 577777776555555555555689999999998754432 11235779999999988754 344445555
Q ss_pred hcCCCCcEEEEeccCC
Q psy12410 503 NVRPDRQTVMFSATFP 518 (615)
Q Consensus 503 ~~~~~~q~l~~SAT~~ 518 (615)
.+..+. .+++|.|+-
T Consensus 1125 qL~a~h-RLILSGTPI 1139 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPI 1139 (1549)
T ss_pred HHhhcc-eEEeeCCCc
Confidence 555444 467888874
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1.1e-07 Score=108.20 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.+++.++... +..++++|++.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-----~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-----PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-----cccccEEEEcccchHHHHHHHHHH
Confidence 45667999998876654 788999999999999999999999887543 234789999999988889999998
Q ss_pred Hhh
Q psy12410 421 KFT 423 (615)
Q Consensus 421 ~~~ 423 (615)
++.
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.67 E-value=4.2e-07 Score=105.41 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=103.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
+..+|.--||||||++.+..+-. ++.. ...|.|+|||-++.|-.|+.+.+..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 45888889999999985544433 3332 5689999999999999999999999876542211 223333333
Q ss_pred HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 444 SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 444 ~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
..+..+ ..|||+|.+.|-..+...... ..-..-=+||+||||+-- ++..-..+-..+ +....++||+|+.-.-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~-~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELE-LLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhccccc-ccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 444434 489999999998887654111 112223379999999843 333333333333 34779999999864322
Q ss_pred HH-HHHHcCCCEEEEEC
Q psy12410 523 AL-ARRILNKPIEIQVG 538 (615)
Q Consensus 523 ~~-~~~~~~~p~~i~~~ 538 (615)
.- ....++++++.+..
T Consensus 419 ~~tt~~~fg~ylh~Y~i 435 (962)
T COG0610 419 KDTTKDVFGDYLHTYTI 435 (962)
T ss_pred ccchhhhhcceeEEEec
Confidence 22 34556666665543
No 157
>KOG0388|consensus
Probab=98.64 E-value=6.7e-08 Score=102.12 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
++..+|...+.++. +|=|.|+...+|.|||+. .+.++.|+..... --|| .|||+|...|-+ |..+|.+|+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~n---IwGP-FLVVtpaStL~N-WaqEisrFl 640 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHN---IWGP-FLVVTPASTLHN-WAQEISRFL 640 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhcc---CCCc-eEEeehHHHHhH-HHHHHHHhC
Confidence 46678988888875 678999999999999998 4667778766531 2255 699999988854 778899998
Q ss_pred hhcCcEEEEEEcCCChhHHHHHH---------hcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISEL---------KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFE 494 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l---------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~ 494 (615)
+. ++++.++|+.......... ..+.+|+|+|++.++.--.. +.--.+.|+|+|||+.+-... .
T Consensus 641 P~--~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky-----~qkvKWQYMILDEAQAIKSSs-S 712 (1185)
T KOG0388|consen 641 PS--FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKY-----LQKVKWQYMILDEAQAIKSSS-S 712 (1185)
T ss_pred cc--ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHH-----HHhhhhhheehhHHHHhhhhh-h
Confidence 84 6888888887655554442 23589999999887432211 111246799999999886432 3
Q ss_pred HHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 495 PQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 495 ~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
..+..++..- .+-.|++|.|+..
T Consensus 713 ~RWKtLLsF~--cRNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 713 SRWKTLLSFK--CRNRLLLTGTPIQ 735 (1185)
T ss_pred hHHHHHhhhh--ccceeeecCCccc
Confidence 3344444332 2336889999753
No 158
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.62 E-value=2.7e-07 Score=104.59 Aligned_cols=72 Identities=32% Similarity=0.396 Sum_probs=59.4
Q ss_pred CCCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q psy12410 344 QNYEKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEA 419 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 419 (615)
.....|++.|.+++..+. .+..+++.||||+|||++|++|++.+.... +.+++|.++|..|-.|+++..
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHhh
Confidence 456699999999886654 556699999999999999999999887543 578999999999999987766
Q ss_pred HHh
Q psy12410 420 KKF 422 (615)
Q Consensus 420 ~~~ 422 (615)
..+
T Consensus 84 ~~~ 86 (654)
T COG1199 84 LPI 86 (654)
T ss_pred cch
Confidence 554
No 159
>KOG0952|consensus
Probab=98.62 E-value=4.1e-08 Score=108.33 Aligned_cols=223 Identities=20% Similarity=0.229 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 348 KPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
.+.|+|.+.+..+. ...++++.+|||+|||++|.+.++..+... .+.+++|++|-.+|+..-...+.......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhhhcccC
Confidence 45666666655443 345788899999999999999888776554 36889999999999998888887766656
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHH-----
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRII----- 501 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~----- 501 (615)
|++++-+.|..... ...+. .++|+|+||......... +.....+.++.++|+||.|++. .+..+.+..|.
T Consensus 1001 g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rs-w~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRS-WQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred CceeEeccCccCCC--hhhee-cCceEEcccccccCcccc-ccchhhhccccceeeccccccc-CCCcceEEEEeecccc
Confidence 89999998877554 22222 389999999998766653 2333557899999999999776 33333333222
Q ss_pred --HhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEE------ecC-hhHHHHHHHHHHhccCC
Q psy12410 502 --DNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI------VLD-EEQKMLKLLELLGIYQD 572 (615)
Q Consensus 502 --~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~~~-~~~k~~~l~~~l~~~~~ 572 (615)
.+..+.++.+++|--+. ....++.|....+. .. ......+..+..++. .|+ ...+..-..+.++.+.+
T Consensus 1076 ~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~-~n-f~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM-YN-FRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred CccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CC-CCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 22334456666654333 23556666554433 11 111111111111111 111 11222334566777888
Q ss_pred CCcEEEEeCCcc
Q psy12410 573 QGSVIVFVDKQE 584 (615)
Q Consensus 573 ~~~~LIF~~s~~ 584 (615)
..++|||+.+..
T Consensus 1153 ~~p~lifv~srr 1164 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRR 1164 (1230)
T ss_pred CCceEEEeeccc
Confidence 889999999876
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=8e-07 Score=99.67 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 428 (615)
|++.| ++-.+.-.+.-|+.+.||-|||+++.+|++-..+. |.-|-||+..--||..=.+++..++..+|+
T Consensus 170 ~yDVQ--liGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fLGL 239 (1112)
T PRK12901 170 HYDVQ--LIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred ccchH--HhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHhCC
Confidence 44444 33333334445999999999999999998877654 344777788889999889999999999999
Q ss_pred EEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 429 RVVCVYGGTGISEQISELKRGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 429 ~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
.|.|+.............+ .|||+++|..-| .+-+..... -...+.+.|.||||+|-++
T Consensus 240 svg~i~~~~~~~~~rr~aY-~~DItYgTn~EfGFDYLRDnm~~~~~-~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAY-NADITYGTNNEFGFDYLRDNMAHSPE-DLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ceeecCCCCCCHHHHHHhC-CCcceecCCCccccccchhccccchH-hhhCcCCceeEeechhhhh
Confidence 9999876333333333333 399999997554 333222111 1124678899999999654
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.59 E-value=5.1e-07 Score=101.69 Aligned_cols=172 Identities=22% Similarity=0.273 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHHHc--------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMS--------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKE 418 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~--------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 418 (615)
..-+.+|-.|+..+.. |--+|-.|.||+|||++=+-.|+ .+.. ...|.+..|-.-.|.|..|+-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457899999988763 22345559999999997543333 3322 14466788888888888887777
Q ss_pred HHHhhhhcCcEEEEEEcCCChhHHH-------------------------------------------HHHhc-------
Q psy12410 419 AKKFTKSLGLRVVCVYGGTGISEQI-------------------------------------------SELKR------- 448 (615)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~~~-------------------------------------------~~l~~------- 448 (615)
+++-+.-.+-..+++.|+....+-. ..+..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 7765433333444554432111100 00000
Q ss_pred -CCcEEEEChHHHHHHHHhcC--CCcccCC--CccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEeccCChHHH
Q psy12410 449 -GAEIIVCTPGRMIDMLAANS--GRVTNLR--RVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQME 522 (615)
Q Consensus 449 -~~~Iiv~Tp~~l~~~l~~~~--~~~~~l~--~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~ 522 (615)
...|+|||+..++....... .....+- .-+.|||||+|.+- ......+..++.-+ ..+..+|++|||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 15899999999988763211 1111111 13579999999643 22233344443321 235779999999998765
Q ss_pred HHH
Q psy12410 523 ALA 525 (615)
Q Consensus 523 ~~~ 525 (615)
..+
T Consensus 640 ~~L 642 (1110)
T TIGR02562 640 KTL 642 (1110)
T ss_pred HHH
Confidence 533
No 162
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.55 E-value=4.3e-07 Score=88.82 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHhcC-CCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIMSGRD-LIGIAKTGSGKTVAFVLPLLRHILDQ-PPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
++++.|..|+..+++... .+|.||.|+|||.+.+- ++..++.. .......+.++||++|+...+..+...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999999999998 99999999999976333 33333110 000124578899999999999999887777
No 163
>KOG4150|consensus
Probab=98.51 E-value=5.7e-07 Score=93.06 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=161.4
Q ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 341 LKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 341 l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
+..+..+....+|.++|..+.+|+++++.-.|.+||.++|.+.+...++..+ ....|++.||.+++....+.++
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceE
Confidence 3445667889999999999999999999999999999999998888776543 4457889999998865432221
Q ss_pred Hhhh---hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC-CcccCCCccEEEEccccccccCCcHH-
Q psy12410 421 KFTK---SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG-RVTNLRRVTYIVLDEADRMFDMGFEP- 495 (615)
Q Consensus 421 ~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~l~~~~~lVvDEah~~~~~~~~~- 495 (615)
-... ...--++..+.+........-+..|..++++.|.++...+..+.. ....+-...++++||+|..+. -|..
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~ 431 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTKAL 431 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chhhH
Confidence 1110 011123444556566666666677899999999998776654321 111233456799999996542 1232
Q ss_pred ---HHHHHHHhc-----CCCCcEEEEeccCChHHHHHHHHHcCCCEEE-EECCcccccCCeEEEEEecC------hh---
Q psy12410 496 ---QVMRIIDNV-----RPDRQTVMFSATFPRQMEALARRILNKPIEI-QVGGRSVVCKEVEQHVIVLD------EE--- 557 (615)
Q Consensus 496 ---~~~~i~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i-~~~~~~~~~~~i~~~~~~~~------~~--- 557 (615)
++..++..+ +.+.|++-.+||+...++-....+.-+.+.. ++.+.. ..-.+.++.-+ ..
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhh
Confidence 333333322 3467899999999776554333333344433 232221 22333443322 11
Q ss_pred HHHHHHHHHHhc-cCCCCcEEEEeCCcchHHHHHHHhhc----CCC----cEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGI-YQDQGSVIVFVDKQENADSLLFHSMD----PCL----EFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~-~~~~~~~LIF~~s~~~a~~l~~~L~~----~g~----~~~~lhg~~~~~eR~~ 614 (615)
.+......++.+ ...+-++|.||.++.-|+.|....++ .|- .+..+.||....||..
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRK 574 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRK 574 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHH
Confidence 122222222221 12345899999999999988766543 221 4557788888888764
No 164
>KOG4439|consensus
Probab=98.47 E-value=5.6e-07 Score=95.53 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHH-----cCCCEEEEccCCCchhHHhHHHHHHHHhcCC--CCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIM-----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQP--PLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~-----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
.+-|+|..++.++. .....|+....|-|||++.+-.++..-.... .......-..|||||-. |..||+.++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHH
Confidence 56789999999887 2346799999999999975444443322111 11111122599999965 5578888888
Q ss_pred HhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHH----HHHhcCCCcccCC--CccEEEEccccccccC
Q psy12410 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMID----MLAANSGRVTNLR--RVTYIVLDEADRMFDM 491 (615)
Q Consensus 421 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~----~l~~~~~~~~~l~--~~~~lVvDEah~~~~~ 491 (615)
.-....-+.|.+++|..-.......+. .+||||+|+.-+.. -+.... ....|- .+..||+||||.+-+.
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~-~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGK-NSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhccc-CccHHHHhhHHHhhhhhhhhhccc
Confidence 777776778777776553333333333 49999999866644 222111 111232 2557999999988754
No 165
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.46 E-value=1.7e-07 Score=88.30 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH-------HHHH
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI-------GKEA 419 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-------~~~~ 419 (615)
...+..|..++.+++...-+++.||.|+|||++++..++..+.. +.--+++|+-|+.+.-..+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE------GEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT------TS-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh------CCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 45688999999999988889999999999999999888888765 3356788888876431111 1111
Q ss_pred HHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHH
Q psy12410 420 KKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMR 499 (615)
Q Consensus 420 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~ 499 (615)
.-++.++--.. ...........+.....|-+.++..+. + ..|. -.+||||||+.+- ..++..
T Consensus 77 ~p~~~p~~d~l----~~~~~~~~~~~~~~~~~Ie~~~~~~iR-----G----rt~~-~~~iIvDEaQN~t----~~~~k~ 138 (205)
T PF02562_consen 77 EPYLRPIYDAL----EELFGKEKLEELIQNGKIEIEPLAFIR-----G----RTFD-NAFIIVDEAQNLT----PEELKM 138 (205)
T ss_dssp -TTTHHHHHHH----TTTS-TTCHHHHHHTTSEEEEEGGGGT-----T------B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHH----HHHhChHhHHHHhhcCeEEEEehhhhc-----C----cccc-ceEEEEecccCCC----HHHHHH
Confidence 11111000000 000011122333333556666543331 1 2233 3799999999875 788999
Q ss_pred HHHhcCCCCcEEEEec
Q psy12410 500 IIDNVRPDRQTVMFSA 515 (615)
Q Consensus 500 i~~~~~~~~q~l~~SA 515 (615)
++..+..+.++|++--
T Consensus 139 ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHTTB-TT-EEEEEE-
T ss_pred HHcccCCCcEEEEecC
Confidence 9999988888777643
No 166
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.40 E-value=1.1e-05 Score=90.40 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.++..|+..|..+ ..+.++||||+++..|+.|+..|...|+++..+||++++.+|..
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVE 487 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHH
Confidence 3445566666544 34668999999999999999999999999999999999988864
No 167
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.39 E-value=1.6e-06 Score=82.32 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 348 KPTPIQAQAIPAIMSGR--DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
++++-|..++..++... -++++|+.|+|||.+. ..+...+.. .+..+++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 47899999999997443 4677799999999863 334444433 3678999999998887754441
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC-CcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG-RVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
++.+. |...++........ ....+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 22222 22222111111000 00115566799999999655 56777777777
Q ss_pred CC-CCcEEEEecc
Q psy12410 505 RP-DRQTVMFSAT 516 (615)
Q Consensus 505 ~~-~~q~l~~SAT 516 (615)
.. +.++|++-=+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 66 6666666533
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.38 E-value=1.1e-05 Score=89.53 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcE
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 429 (615)
+|+=.|.+..+.....-|+-+.||-|||+++.+|+.-..+. |..|.+++-.--||.--..++..+...+|+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 34445556666666667999999999999999998766543 4458888888999999999999999999999
Q ss_pred EEEEEcCCChhHHHHHHhcCCcEEEEChHHH-----HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRM-----IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
+++...+.+..+...... |||.++|...| .+.+..... -..+....+.||||+|-++
T Consensus 152 vG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~e-e~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQE-EKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHH-HhhhccCCeEEEcchhhee
Confidence 999999987665544433 99999997554 222221110 0124567899999999654
No 169
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.33 E-value=5.6e-06 Score=81.52 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=109.2
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH----------cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCC
Q psy12410 331 CGVSKKILDALKKQNYEKPTPIQAQAIPAIM----------SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGP 400 (615)
Q Consensus 331 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 400 (615)
+.|+..++.. ..++..|.+++-... ...-.++-..||.||.-+..-.|+.+.+. ...
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------Gr~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------GRK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------CCC
Confidence 4667665443 247899998886654 22456667799999987666556666543 245
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccC------
Q psy12410 401 MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNL------ 474 (615)
Q Consensus 401 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l------ 474 (615)
+.|++..+-.|.....+.+..+... .+.+..+..-. .. . ...-...||++|+..|+..-.........|
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~-~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG-D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC-c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 6999999999999998988887543 34443332210 00 0 011135799999999877654321111111
Q ss_pred ---CCccEEEEccccccccCCc--------HHHHHHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 475 ---RRVTYIVLDEADRMFDMGF--------EPQVMRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 475 ---~~~~~lVvDEah~~~~~~~--------~~~~~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
..=.+||+||||.+.+... ...+..+.+.++ ...+|.+|||.-.+..
T Consensus 168 ~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPR 225 (303)
T ss_pred HhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCc
Confidence 2234899999998876432 245555666664 4559999999755433
No 170
>KOG0953|consensus
Probab=98.33 E-value=2.7e-06 Score=88.29 Aligned_cols=201 Identities=14% Similarity=0.093 Sum_probs=122.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
+-++-+|||.||||.- +|+++.. ....+|..|.|-||..+++.+... |+.+-.++|..-.....
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 3367779999999977 6666643 335799999999999999888876 77777777654222211
Q ss_pred HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH-HHHHhcCCCCcEEEEeccCChHHH
Q psy12410 444 SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM-RIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 444 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
. .+.+..+-||.+++. --..+++.||||++.|-|.+.+-.+. .++........+.+ .|.+-
T Consensus 256 ~--~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvl 317 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVL 317 (700)
T ss_pred C--CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHH
Confidence 1 112677888866541 12347899999999988765433332 33332222222222 12344
Q ss_pred HHHHHHcC---CCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 523 ALARRILN---KPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 523 ~~~~~~~~---~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
.+++.++. +.+++.. |.-...-.-...++.-|..+.++..++.| ++.....+...+.+.|..
T Consensus 318 dlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHHHHhcCc
Confidence 55555553 2222221 11111111111445556666555555545 778888888899888775
Q ss_pred -EEEEcCCCChhhhh
Q psy12410 600 -FLPLPAGITRFIWQ 613 (615)
Q Consensus 600 -~~~lhg~~~~~eR~ 613 (615)
|..|+|+++.+.|-
T Consensus 383 k~aVIYGsLPPeTr~ 397 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRL 397 (700)
T ss_pred ceEEEecCCCCchhH
Confidence 99999999998874
No 171
>PRK10536 hypothetical protein; Provisional
Probab=98.32 E-value=9.8e-06 Score=78.51 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH-----------HH
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL-----------CM 413 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-----------a~ 413 (615)
++...+..|..++.++..+..+++.|++|+|||+.++..++..++.. .-.+++|.-|+... ..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 45667889999999999888899999999999999877777666432 23456666666432 12
Q ss_pred HHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHh--cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC
Q psy12410 414 QIGKEAKKFTKSLGLRVVCVYGGTGISEQISELK--RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM 491 (615)
Q Consensus 414 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~ 491 (615)
.+.-++..+...+.. +.|. .....+. ....|-|+....+ .- ..|. -++||||||+.+-
T Consensus 130 K~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~ym----RG-----rtl~-~~~vIvDEaqn~~-- 189 (262)
T PRK10536 130 KFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFAYM----RG-----RTFE-NAVVILDEAQNVT-- 189 (262)
T ss_pred HHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHHHh----cC-----Cccc-CCEEEEechhcCC--
Confidence 222222222221111 0111 1122221 1234555553322 21 2232 4799999999765
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 492 GFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 492 ~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
..++..++..+..+.++|++.
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeC
Confidence 588888898888887766553
No 172
>KOG1802|consensus
Probab=98.31 E-value=2.8e-05 Score=82.43 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q psy12410 340 ALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEA 419 (615)
Q Consensus 340 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 419 (615)
.+-..++.+++.-|..|+..+++..-.|++||.|+|||.+.. .|+.|+..+ ....|||++|+...+.|+.+.|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 445568889999999999999999999999999999999744 355555543 3556999999999999997777
Q ss_pred HHhhhhcCcEEEEEEc
Q psy12410 420 KKFTKSLGLRVVCVYG 435 (615)
Q Consensus 420 ~~~~~~~~~~~~~~~g 435 (615)
.+. |++|+-+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 664 677776644
No 173
>KOG0921|consensus
Probab=98.24 E-value=4.4e-06 Score=91.01 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 354 AQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 354 ~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
..++.++..+.-+++-+.||+|||..+.--+|..++... ......+.+..||+..+..+.+.+.. .-+-.++-.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~---er~e~~g~t 457 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVAN---ERGEEVGET 457 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHH---hhHHhhccc
Confidence 345556666777888899999999998888888877652 12234578888999988888554432 222222222
Q ss_pred EcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEE
Q psy12410 434 YGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVM 512 (615)
Q Consensus 434 ~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~ 512 (615)
.|.......... ..---|++||.+.++..+... +..+.++|+||.|... +..|...+.+-+..+.++..+++
T Consensus 458 vgy~vRf~Sa~p-rpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 458 CGYNVRFDSATP-RPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccccccc-ccccceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 222222221111 011479999999999988754 6788999999999433 33354444443333444555555
Q ss_pred EeccCC
Q psy12410 513 FSATFP 518 (615)
Q Consensus 513 ~SAT~~ 518 (615)
+|||+.
T Consensus 531 msatId 536 (1282)
T KOG0921|consen 531 MSATID 536 (1282)
T ss_pred hhcccc
Confidence 666554
No 174
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.19 E-value=3.5e-05 Score=73.28 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=96.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc---CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMS---GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~---~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
.|+....+..|+=.+.. + ..+++.|.++...+.+ |.|.+.+.-+|.|||.+ ++|++..++.. ...-|.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEE
Confidence 45555555665544332 2 3689999999999884 58999999999999999 67888777653 235677
Q ss_pred EEcCcHHHHHHHHHHHHHhhhh-cCcEEEEEEc--CCChh----HHH----HHHhcCCcEEEEChHHHHHHHHhcCC---
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKS-LGLRVVCVYG--GTGIS----EQI----SELKRGAEIIVCTPGRMIDMLAANSG--- 469 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g--~~~~~----~~~----~~l~~~~~Iiv~Tp~~l~~~l~~~~~--- 469 (615)
+++| .+|..|+...+..-+.. ++-.+..+.- .+... ..+ ..+.....|+++||+.++.+....-.
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 7777 57889998888765443 3333333311 12111 111 23333467999999998664332210
Q ss_pred --Cc----------ccCCCccEEEEcccccccc
Q psy12410 470 --RV----------TNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 470 --~~----------~~l~~~~~lVvDEah~~~~ 490 (615)
.. ..|.....=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 0133445578899997764
No 175
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.18 E-value=0.00023 Score=79.57 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
..+++.|..|+..++.. ..+++.||+|+|||.+..- ++.++.. .+.+|||++||...|..+.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998876 6788999999999987443 3333332 256899999999999999777765
No 176
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.13 E-value=3e-05 Score=85.39 Aligned_cols=144 Identities=18% Similarity=0.248 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcE
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 429 (615)
..+|+.|+..++.++-+++.|+.|+|||.+. ..++..+....+ ....+.+++++||--.|..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999863 223333322210 0113679999999998888777665543322110
Q ss_pred EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCC---cccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGR---VTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
. .+.....+-..|..+|+......... ..+.-.+++||||||-.+- ...+..++..+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 00101122234443333221100000 1223458899999999443 5677888899999
Q ss_pred CCcEEEEe
Q psy12410 507 DRQTVMFS 514 (615)
Q Consensus 507 ~~q~l~~S 514 (615)
..++|++-
T Consensus 286 ~~rlIlvG 293 (586)
T TIGR01447 286 NTKLILLG 293 (586)
T ss_pred CCEEEEEC
Confidence 99888875
No 177
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.08 E-value=3.6e-05 Score=85.01 Aligned_cols=144 Identities=20% Similarity=0.274 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 428 (615)
..++|+.|+...+.++-+++.|++|+|||.+.. .++..+.... ......+++++||--.|..+.+.+......+++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 358999999999999999999999999998732 2333332211 112457899999999999887777654433221
Q ss_pred EEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC---CCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 429 RVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS---GRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 429 ~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
. . .+......-..|.-+|+....... ....+.-.+++||||||-.+ + ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 0 0 000001111223323222111000 00112345689999999944 3 677788889999
Q ss_pred CCCcEEEEe
Q psy12410 506 PDRQTVMFS 514 (615)
Q Consensus 506 ~~~q~l~~S 514 (615)
++.++|++-
T Consensus 291 ~~~rlIlvG 299 (615)
T PRK10875 291 PHARVIFLG 299 (615)
T ss_pred cCCEEEEec
Confidence 999888885
No 178
>KOG1803|consensus
Probab=98.05 E-value=1.4e-05 Score=84.48 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMSGRD-LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
..+.+-|..|+...++.++ +++.||+|+|||.+....+.+.+ . .+.+|||++||.+.+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-K-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-H-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4678899999999998866 56779999999998655555554 3 36789999999999888877533
No 179
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.01 E-value=8.4e-05 Score=84.32 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...+++.|..|+..+..++-+++.|+.|+|||.+. -.++..+... +....+++++||-..|..+.+.
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~------- 387 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV------- 387 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------
Confidence 35899999999999999899999999999999863 2333333221 1115688899998887654322
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC--CCcccCCCccEEEEccccccccCCcHHHHHHHHHh
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS--GRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 503 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 503 (615)
.|.... |..+|+....... .........++||||||+.+- ...+..++..
T Consensus 388 ~g~~a~------------------------Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 388 TGLTAS------------------------TIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred cCCccc------------------------cHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 122111 1111111000000 000113457899999999553 4566777888
Q ss_pred cCCCCcEEEEe
Q psy12410 504 VRPDRQTVMFS 514 (615)
Q Consensus 504 ~~~~~q~l~~S 514 (615)
++++.++|++-
T Consensus 440 ~~~~~rlilvG 450 (720)
T TIGR01448 440 LPDHARLLLVG 450 (720)
T ss_pred CCCCCEEEEEC
Confidence 88888888874
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.00 E-value=2.5e-05 Score=81.46 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=68.3
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 445 (615)
+||.|..|||||++++-.+. .+.. ...+..++++++...|+..+...+..-...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhhccc--------------------
Confidence 68889999999998544333 3311 134778999999999988877766554200
Q ss_pred HhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-------cHHHHHHHHHh
Q psy12410 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-------FEPQVMRIIDN 503 (615)
Q Consensus 446 l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-------~~~~~~~i~~~ 503 (615)
......+..+..++..+.. .......+++|||||||+|...+ ...++..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~---~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSE---SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhccc---ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0022334445445443331 11346789999999999998631 34677777766
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.00 E-value=1.8e-05 Score=86.48 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=77.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc--------CcEEEEEEc
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL--------GLRVVCVYG 435 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--------~~~~~~~~g 435 (615)
-|+=|.+.||+|||.||+-.|+....+. +--+.||+|||.+.-.-++..+.....++ .+..+.+ .
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~Y------G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~-~ 147 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKY------GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIY-D 147 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHh------CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEee-c
Confidence 3677889999999999987776543322 24579999999887555443333322222 2222222 1
Q ss_pred CCChhHHHHHHhcCCcEEEEChHHHHHH------HHhcCCCccc-----------CCCc-cEEEEccccccccCCcHHHH
Q psy12410 436 GTGISEQISELKRGAEIIVCTPGRMIDM------LAANSGRVTN-----------LRRV-TYIVLDEADRMFDMGFEPQV 497 (615)
Q Consensus 436 ~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~------l~~~~~~~~~-----------l~~~-~~lVvDEah~~~~~~~~~~~ 497 (615)
.......-....++.|++.|...+..- +........+ +..+ -+|||||-|+|... -..+
T Consensus 148 -~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~ 224 (985)
T COG3587 148 -EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTY 224 (985)
T ss_pred -hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHH
Confidence 111111111223467777776555321 1111000011 1111 27999999998742 1222
Q ss_pred HHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 498 MRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 498 ~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
..|. .+.|.+ +|=|+||++....
T Consensus 225 ~~i~-~l~pl~-ilRfgATfkd~y~ 247 (985)
T COG3587 225 GAIK-QLNPLL-ILRFGATFKDEYN 247 (985)
T ss_pred HHHH-hhCceE-EEEecccchhhhc
Confidence 2232 233322 6779999987655
No 182
>KOG1015|consensus
Probab=97.92 E-value=6.8e-05 Score=82.38 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=91.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc----CcEEEEEEcCCC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL----GLRVVCVYGGTG 438 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~g~~~ 438 (615)
|-.+|+.--+|.|||+..+..+...+++.. ..-..+|||+|...+.+ |+.+|.+|+..+ .|.|..+.....
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~k----lg~ktaLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr 770 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDK----LGFKTALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSELATVKR 770 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhc----cCCceEEEEcchHHHHH-HHHHHHHhcccccccccceeehhhhccC
Confidence 345677777899999964332222233321 34567999999887654 788899998853 345544433333
Q ss_pred hhHHH---HHHhcCCcEEEEChHHHHHHHHhcCCCccc--------C--CCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 439 ISEQI---SELKRGAEIIVCTPGRMIDMLAANSGRVTN--------L--RRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 439 ~~~~~---~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~--------l--~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
....+ ..+...--|.|.-+.++..+-.....+... | ..-++||+||+|.|-+. -..+.+-+..++
T Consensus 771 ~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~ir 848 (1567)
T KOG1015|consen 771 PEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIR 848 (1567)
T ss_pred hHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHH
Confidence 23333 333333467777777776544332211111 1 34579999999987754 455555666665
Q ss_pred CCCcEEEEeccCChHHHHHHHHHc
Q psy12410 506 PDRQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
..+. |++|.|+-. +.|+.+||
T Consensus 849 tkRR-I~LTGTPLQ--NNLmEY~C 869 (1567)
T KOG1015|consen 849 TKRR-IILTGTPLQ--NNLMEYHC 869 (1567)
T ss_pred hhee-EEeecCchh--hhhHHHHH
Confidence 5554 567777532 33444444
No 183
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00031 Score=73.28 Aligned_cols=132 Identities=12% Similarity=0.138 Sum_probs=75.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
...++++||||+|||++..-.+..+.+... ..+...+||-+.| |..+..+ ++.++..+++.+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~---~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~-------- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD---DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAI-------- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc---cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEee--------
Confidence 356889999999999986544443332210 0122333444444 4444433 556665556654332
Q ss_pred HHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhcCCC-CcEEEEeccCCh
Q psy12410 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPD-RQTVMFSATFPR 519 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~-~q~l~~SAT~~~ 519 (615)
.++..+...+.. +..+++||||+|.++... .....+..++....+. --+|++|||...
T Consensus 240 -------------~~~~~l~~~L~~-------~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 240 -------------ESFKDLKEEITQ-------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred -------------CcHHHHHHHHHH-------hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 234445444432 467899999999987522 1345666666666544 346788999863
Q ss_pred -HHHHHHHHH
Q psy12410 520 -QMEALARRI 528 (615)
Q Consensus 520 -~~~~~~~~~ 528 (615)
.+..++..|
T Consensus 300 ~~~~~~~~~~ 309 (388)
T PRK12723 300 SDVKEIFHQF 309 (388)
T ss_pred HHHHHHHHHh
Confidence 344455554
No 184
>KOG1132|consensus
Probab=97.85 E-value=0.00012 Score=80.43 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHH---HHHHHHhcCCC-------C------CC----------
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVL---PLLRHILDQPP-------L------EE---------- 396 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l---~~l~~~~~~~~-------~------~~---------- 396 (615)
.+|++.|...+..++ ...+.++..|||+|||++.+- ++..++....+ . ..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 478999987766554 668899999999999996543 44444331110 0 00
Q ss_pred --------CCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc---------------------------------
Q psy12410 397 --------TDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG--------------------------------- 435 (615)
Q Consensus 397 --------~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------------------------------- 435 (615)
...|++.|-.=|-.-..|+.+++.+..-. ++++++.+
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 01367777777766667887777765432 23232211
Q ss_pred --------------CCChhHHH------------------HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 436 --------------GTGISEQI------------------SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 436 --------------~~~~~~~~------------------~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
+.. ..++ ..+...++||+|-+..|++-.-+...+ .+|. -.+||+|
T Consensus 178 f~~~~~~~sl~~~l~~~-i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~-v~Lk-nsIVIfD 254 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDE-IFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHK-VDLK-NSIVIFD 254 (945)
T ss_pred ccccccccccccccCCC-cccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccc-cccc-ccEEEEe
Confidence 000 0011 222334699999999998877654322 3443 4689999
Q ss_pred ccccccc
Q psy12410 484 EADRMFD 490 (615)
Q Consensus 484 Eah~~~~ 490 (615)
|||.|.+
T Consensus 255 EAHNiEd 261 (945)
T KOG1132|consen 255 EAHNIED 261 (945)
T ss_pred ccccHHH
Confidence 9998764
No 185
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00013 Score=86.03 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHH-----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIM-----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~-----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
..+.++|...+..+. .+.+.++...+|.|||+..+..+.. ++... ....+.+||+||+..+ ..|..++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~---~~~~~~~liv~p~s~~-~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI---KVYLGPALIVVPASLL-SNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc---cCCCCCeEEEecHHHH-HHHHHHHhh
Confidence 467888999887755 3678889999999999975444433 32221 1114679999998555 668888888
Q ss_pred hhhhcCcEEEEEEcCCCh----hHHHHHHhcC-----CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC
Q psy12410 422 FTKSLGLRVVCVYGGTGI----SEQISELKRG-----AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG 492 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~----~~~~~~l~~~-----~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~ 492 (615)
|+..... +...+|.... .+....+... .+|+++|.+.|...+... ....-..+.++|+||||.+.+..
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~--~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDH--GGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhH--HHHhhceeeeeehhhHHHHhhhh
Confidence 8876543 5666665541 3444444432 799999999998732110 01223457899999999977543
Q ss_pred cHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 493 FEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 493 ~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
......+. .+.... .+++|.|+
T Consensus 489 -s~~~~~l~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 489 -SSEGKALQ-FLKALN-RLDLTGTP 510 (866)
T ss_pred -hHHHHHHH-HHhhcc-eeeCCCCh
Confidence 22222222 222222 26777776
No 186
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.71 E-value=0.00077 Score=76.88 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 347 EKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
..+++-|..|+..++.+ +-++++|+.|+|||.+.- .+..++.. .+..|++++||--.|..+.+ .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~--~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK--AAREAWEA------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH--HHHHHHHh------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 46899999999999874 667899999999997732 23333322 36789999999877665422 1
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHh-c
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN-V 504 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~-~ 504 (615)
.|+... |..++...+... ...+...++||||||-.+. ...+..++.. .
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~---~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANG---RDLLSDKDVLVIDEAGMVG----SRQMARVLKEAE 464 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccC---cccCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 232211 222221111111 1335678999999999554 3334455543 2
Q ss_pred CCCCcEEEEe
Q psy12410 505 RPDRQTVMFS 514 (615)
Q Consensus 505 ~~~~q~l~~S 514 (615)
....++|++-
T Consensus 465 ~~~~kliLVG 474 (744)
T TIGR02768 465 EAGAKVVLVG 474 (744)
T ss_pred hcCCEEEEEC
Confidence 3466666665
No 187
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.0012 Score=65.56 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCHHHHHHHH----HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 349 PTPIQAQAIP----AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 349 ~~~~Q~~~i~----~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+...|..++. .+-.+.+++++||+|+|||..+... .++++. .|..|+|+ +...|+.++.... .
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~-------~g~~v~f~-~~~~L~~~l~~a~----~ 154 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAI-GLALIE-------NGWRVLFT-RTTDLVQKLQVAR----R 154 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHH-HHHHHH-------cCCceeee-eHHHHHHHHHHHH----h
Confidence 4455555553 3447789999999999999875433 333332 24445554 4445555442110 0
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc-HHHHHHHHHh
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF-EPQVMRIIDN 503 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~-~~~~~~i~~~ 503 (615)
+ .+...++. .+..+++|||||.+.+....+ ...+..|++.
T Consensus 155 --------------------------~---~~~~~~l~----------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 155 --------------------------E---LQLESAIA----------KLDKFDLLILDDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred --------------------------C---CcHHHHHH----------HHhcCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 0 01112221 245678999999997653332 3456666665
Q ss_pred cCCCCcEEEEeccCChH
Q psy12410 504 VRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 504 ~~~~~q~l~~SAT~~~~ 520 (615)
......+|+.|-..+..
T Consensus 196 R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 196 RYERRSILITANQPFGE 212 (269)
T ss_pred HHhCCCEEEEcCCCHHH
Confidence 44445566666555443
No 188
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=5.9e-05 Score=79.33 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=84.4
Q ss_pred EEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC----cEEEEEEcCCChh---
Q psy12410 368 GIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG----LRVVCVYGGTGIS--- 440 (615)
Q Consensus 368 ~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~----~~~~~~~g~~~~~--- 440 (615)
+.+.||||||++.+-.||... .+ +....|+.|.....+... ...|..... +.-.+.+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y-~k------gyr~flffvnq~nilekt---~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-KK------GYRNFLFFVNQANILEKT---KLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-Hh------chhhEEEEecchhHHHHH---HhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 467899999999776666554 22 245577777664444433 222221110 1111112222111
Q ss_pred -HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcc---cCCCcc-EEEEccccccccCC------------cHHHHHHHHHh
Q psy12410 441 -EQISELKRGAEIIVCTPGRMIDMLAANSGRVT---NLRRVT-YIVLDEADRMFDMG------------FEPQVMRIIDN 503 (615)
Q Consensus 441 -~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~---~l~~~~-~lVvDEah~~~~~~------------~~~~~~~i~~~ 503 (615)
..+..-..+..|+++|.+.|...+.......+ +|.... +++-||||++-... .|..+..+.-.
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 01111223478999999999776655433222 244444 46679999985311 23344344344
Q ss_pred cCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEEC
Q psy12410 504 VRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538 (615)
Q Consensus 504 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 538 (615)
.+++--++.||||.+.+ ..... -+.+.+++..+
T Consensus 152 ~nkd~~~lef~at~~k~-k~v~~-ky~dkiv~~y~ 184 (812)
T COG3421 152 QNKDNLLLEFSATIPKE-KSVED-KYEDKIVVTYT 184 (812)
T ss_pred cCCCceeehhhhcCCcc-ccHHH-HhccceEEeee
Confidence 45666678899999843 33333 34455545544
No 189
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=0.00061 Score=69.68 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=78.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC-c-H-HHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP-T-R-ELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P-t-r-~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
.-++++|++|+|||.+..-.+. .+.. .+.+++++.. | | ....|+ ..++..+++.+.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~-------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~d-- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK-------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGAD-- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCC--
Confidence 3478889999999997443332 2221 2445555543 2 3 334443 4444445665543222211
Q ss_pred HHHHHHhcCCcEEEEChHH-HHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 441 EQISELKRGAEIIVCTPGR-MIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~-l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
|.. +.+.+.. .....+++||||.|.++. +......+..+...+.|+.-+++++||..
T Consensus 207 ----------------p~~v~~~ai~~-----~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 207 ----------------PAAVAYDAIEH-----AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ----------------HHHHHHHHHHH-----HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 111 1222221 112456799999999875 34467788888888888888899999987
Q ss_pred hHHHHHHHHHc
Q psy12410 519 RQMEALARRIL 529 (615)
Q Consensus 519 ~~~~~~~~~~~ 529 (615)
.+....+..|.
T Consensus 266 ~d~~~~a~~f~ 276 (336)
T PRK14974 266 NDAVEQAREFN 276 (336)
T ss_pred hhHHHHHHHHH
Confidence 77666666654
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.67 E-value=0.00021 Score=56.23 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=36.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEA 419 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 419 (615)
+.-+++.||.|||||.+.+-.+...+.... .. +..+||++||+.++..+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 344566999999999775444444432111 12 668999999999999987766
No 191
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.62 E-value=0.0007 Score=78.38 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRD-LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
..+++-|.+|+..++.+.+ ++++|..|+|||++ +-.++..+ . ..|..|+.++||--.|..+.. .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e------~~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E------AAGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H------HcCCeEEEecCcHHHHHHHhh-------c
Confidence 3799999999999998654 68889999999987 33333332 2 237789999999877654421 1
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV- 504 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~- 504 (615)
.|+.. .|...|+.-...+ ...+...++||||||-.+. ...+..++...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~---~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~ 458 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQG---RDLLTSRDVLVIDEAGMVG----TRQLERVLSHAA 458 (988)
T ss_pred cCcch------------------------hhHHHHHhhhccc---ccccccCcEEEEECcccCC----HHHHHHHHHhhh
Confidence 22211 1222222111111 1336678899999999544 34555666544
Q ss_pred CCCCcEEEEe
Q psy12410 505 RPDRQTVMFS 514 (615)
Q Consensus 505 ~~~~q~l~~S 514 (615)
....++|++.
T Consensus 459 ~~garvVLVG 468 (988)
T PRK13889 459 DAGAKVVLVG 468 (988)
T ss_pred hCCCEEEEEC
Confidence 4567777775
No 192
>PRK04296 thymidine kinase; Provisional
Probab=97.60 E-value=0.00023 Score=67.21 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=59.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc---HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT---RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt---r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
-.++.|++|+|||+.++-.+.... ..+.+++|+-|. +....+ ++..+++.+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~--------~~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~--------- 59 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYE--------ERGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA--------- 59 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH--------HcCCeEEEEeccccccccCCc-------EecCCCCcccc---------
Confidence 468899999999987555444443 236678888662 222111 12222221111
Q ss_pred HHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
+.+..+..+...+.. .-..+++|||||||.+- ..++..++..+.+.-..|++++-
T Consensus 60 ----------~~~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 ----------IPVSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ----------eEeCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 123344445444432 12457899999998643 34466666665444445555544
No 193
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0015 Score=67.19 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=75.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE-EEcC-cHH-HHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI-IMSP-TRE-LCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l-il~P-tr~-La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
+.+.++||||+|||......+.... . .+.+++ |-+- .|. .+.| ++.++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-G-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-H-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE---------
Confidence 5678999999999998655444332 2 244444 4443 332 3333 3444443343222
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCC-
Q psy12410 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFP- 518 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~- 518 (615)
++.+|..|...+... ..-.++++||||-+=+.... .....+..++....++.-++.+|||..
T Consensus 301 ------------v~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ------------ecCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 234677776666431 11225789999999775532 235556666666666655677999765
Q ss_pred hHHHHHHHHHc
Q psy12410 519 RQMEALARRIL 529 (615)
Q Consensus 519 ~~~~~~~~~~~ 529 (615)
.++..++..|-
T Consensus 365 ~d~~~i~~~F~ 375 (436)
T PRK11889 365 KDMIEIITNFK 375 (436)
T ss_pred HHHHHHHHHhc
Confidence 45566666654
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00048 Score=71.25 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=69.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE-cCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCCh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM-SPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGI 439 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 439 (615)
.+..++++||||+|||+.....+..++... ...+|.++ +.+ |.-+. +.+..|+..+++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~~~------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLTTDSYRIGGH---EQLRIFGKILGVPVHA------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecccccccHH---HHHHHHHHHcCCceEe-------
Confidence 466889999999999998765555444322 11233333 333 22232 3355555555554433
Q ss_pred hHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-cHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 440 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
+.+++.+...+. .+.+.++|+||.+-+..... ....+..+.....+...+|++|||..
T Consensus 200 --------------~~~~~~l~~~l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 200 --------------VKDGGDLQLALA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred --------------cCCcccHHHHHH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 234434433332 24567899999997543221 22333333222233344788899985
Q ss_pred hH-HHHHHHHHc
Q psy12410 519 RQ-MEALARRIL 529 (615)
Q Consensus 519 ~~-~~~~~~~~~ 529 (615)
.. +...+..|.
T Consensus 259 ~~~l~evi~~f~ 270 (374)
T PRK14722 259 GDTLNEVVQAYR 270 (374)
T ss_pred hHHHHHHHHHHH
Confidence 54 344555554
No 195
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.0015 Score=67.17 Aligned_cols=134 Identities=20% Similarity=0.264 Sum_probs=83.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH-HHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR-ELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr-~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
.++.+.++||||.|||+..+-.+..+.+.. +....+||.+.|- .-|. +.++.++.-+++.+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA~---EQLk~Ya~im~vp~~v-------- 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGAV---EQLKTYADIMGVPLEV-------- 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhHH---HHHHHHHHHhCCceEE--------
Confidence 478899999999999997554444444211 2344567777663 3232 2266666666665443
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCC-
Q psy12410 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFP- 518 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~- 518 (615)
+-+|.-|...+. .|.++++|.||=|-+-. |.....++..++....+.--.|.+|||..
T Consensus 266 -------------v~~~~el~~ai~-------~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~ 325 (407)
T COG1419 266 -------------VYSPKELAEAIE-------ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY 325 (407)
T ss_pred -------------ecCHHHHHHHHH-------HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch
Confidence 446666666554 36677888888776432 33355667777776655555778899875
Q ss_pred hHHHHHHHHHcCC
Q psy12410 519 RQMEALARRILNK 531 (615)
Q Consensus 519 ~~~~~~~~~~~~~ 531 (615)
.++.+++..|-.-
T Consensus 326 ~dlkei~~~f~~~ 338 (407)
T COG1419 326 EDLKEIIKQFSLF 338 (407)
T ss_pred HHHHHHHHHhccC
Confidence 4566666666443
No 196
>KOG1805|consensus
Probab=97.56 E-value=0.00046 Score=76.73 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=86.9
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 331 CGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRD-LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 331 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
..+.+.+...+ ...++.-|.+|+-.++..+| .+|.|=+|+|||.+.+..+-..+ ..|.+||+.+-|.
T Consensus 656 ~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~--------~~gkkVLLtsyTh 723 (1100)
T KOG1805|consen 656 KVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV--------ALGKKVLLTSYTH 723 (1100)
T ss_pred cccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH--------HcCCeEEEEehhh
Confidence 34555555532 34688999999999887665 57778899999987543332222 1277899999998
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEEEEcCCC-----------------hhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcc
Q psy12410 410 ELCMQIGKEAKKFTKSLGLRVVCVYGGTG-----------------ISEQISELKRGAEIIVCTPGRMIDMLAANSGRVT 472 (615)
Q Consensus 410 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 472 (615)
..+.-+.-.++.+ ++.+.-+-.+.. .............||.||--.+-+.|.
T Consensus 724 sAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------- 792 (1100)
T KOG1805|consen 724 SAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------- 792 (1100)
T ss_pred HHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-------
Confidence 8877774444443 443332222111 112223344458899999766655443
Q ss_pred cCCCccEEEEccccccc
Q psy12410 473 NLRRVTYIVLDEADRMF 489 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~ 489 (615)
..+.++|+|||||-.+.
T Consensus 793 ~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hccccCEEEEccccccc
Confidence 34679999999999765
No 197
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.55 E-value=0.00074 Score=63.88 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=75.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC-cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP-TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P-tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
++++||||+|||.+..-.+...... +....||-+- .|.-|..+ ++.++..+++.+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-------~~~v~lis~D~~R~ga~eQ---L~~~a~~l~vp~~~~~~~~------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-------GKKVALISADTYRIGAVEQ---LKTYAEILGVPFYVARTES------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEESTSSTHHHHH---HHHHHHHHTEEEEESSTTS-------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-------cccceeecCCCCCccHHHH---HHHHHHHhccccchhhcch-------
Confidence 6889999999999865545444322 1223333333 34444444 6666666676655432211
Q ss_pred HHhcCCcEEEEChHHH-HHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 445 ELKRGAEIIVCTPGRM-IDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 445 ~l~~~~~Iiv~Tp~~l-~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
.|..+ ...+.. ....++++|+||=+-+.. +......+..++..+.+.--++++|||......
T Consensus 67 -----------~~~~~~~~~l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 -----------DPAEIAREALEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -----------CHHHHHHHHHHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -----------hhHHHHHHHHHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 12222 223322 223568899999998654 223466777888888777778889999977654
Q ss_pred HHHHHH
Q psy12410 523 ALARRI 528 (615)
Q Consensus 523 ~~~~~~ 528 (615)
..+..+
T Consensus 131 ~~~~~~ 136 (196)
T PF00448_consen 131 EQALAF 136 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 198
>PRK06526 transposase; Provisional
Probab=97.54 E-value=0.0009 Score=66.02 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHcCCCEEEEccCCCchhHHhHHHHH
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
.+..+.+++++||+|+|||..+...+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHH
Confidence 345678999999999999987554333
No 199
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.0062 Score=64.79 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=71.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH-hcCCCCCCCCCCeE-EEEcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCC
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHI-LDQPPLEETDGPMA-IIMSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTG 438 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~~-lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 438 (615)
.++.++++||||+|||++.+..+.... .. .+.+| ||-+.+ +..+. ..+..++...++.+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------ 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------ 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------
Confidence 356789999999999987654444333 22 13334 444433 33232 3344454444543322
Q ss_pred hhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhc-CCCCcEEEEecc
Q psy12410 439 ISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNV-RPDRQTVMFSAT 516 (615)
Q Consensus 439 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~-~~~~q~l~~SAT 516 (615)
+.++..+...+.. +..+++||||-+-+.. +......+..++... .+..-.|+++||
T Consensus 284 ---------------~~~~~~l~~~l~~-------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 284 ---------------VYDPKELAKALEQ-------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ---------------cCCHHhHHHHHHH-------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 2345555555542 3468999999987543 222344566666622 334457889998
Q ss_pred CCh-HHHHHHHHH
Q psy12410 517 FPR-QMEALARRI 528 (615)
Q Consensus 517 ~~~-~~~~~~~~~ 528 (615)
... .+..++..|
T Consensus 342 ~~~~~l~~~~~~f 354 (424)
T PRK05703 342 TKYEDLKDIYKHF 354 (424)
T ss_pred CCHHHHHHHHHHh
Confidence 874 455555555
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.47 E-value=0.00032 Score=73.38 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 348 KPTPIQAQAIPAI------MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 348 ~~~~~Q~~~i~~i------~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
++++-|+.++..+ ..+.++++.|+-|+|||.++ -++.+.+. ..+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhc------cccceEEEecchHHHHHhc
Confidence 4678899998888 57789999999999999873 23333332 2367899999998887665
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=0.00042 Score=60.93 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
++.+++.|++|+|||.+....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568999999999999744333
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.44 E-value=0.00066 Score=67.96 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHHHcCC--CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH-------
Q psy12410 345 NYEKPTPIQAQAIPAIMSGR--DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI------- 415 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~------- 415 (615)
|+...+..|.-|+.+++.-. =|.+.|+.|||||+.++.+.+..++.. ....++||.=|+..+-..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-----~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-----KRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-----hhhceEEEecCCcCcccccCcCCCch
Confidence 66667788999999988653 466779999999999998888888765 3355678777775543221
Q ss_pred HHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCC-------ccEEEEcccccc
Q psy12410 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRR-------VTYIVLDEADRM 488 (615)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~-------~~~lVvDEah~~ 488 (615)
.+.+..|++. .......+.+.. =|+.+.|..++....-.+..|.. -.+||||||+.+
T Consensus 300 EeKm~PWmq~-------------i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQA-------------IFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHHH-------------HHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 0111111110 001111111111 11222333333322111111211 248999999987
Q ss_pred ccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 489 FDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 489 ~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
- ..++..|+....++.++|++.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 5 688999999999888877764
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.43 E-value=0.0029 Score=73.88 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMS-GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
+++..+...... ...+++-|.+|+..+.. ++-++++|+.|+|||++.- .+... +. ..|..|+.++||--.
T Consensus 367 v~~~~l~a~~~~-~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~-~e------~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFAR-HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREA-WE------AAGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHH-HH------HcCCeEEEEcCcHHH
Confidence 344444443333 34799999999998864 5668889999999998732 23332 22 237789999999777
Q ss_pred HHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC
Q psy12410 412 CMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM 491 (615)
Q Consensus 412 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~ 491 (615)
|..+.+ ..|+... |...|+-....+ ...+...++||||||-.+.
T Consensus 438 A~~L~e-------~~Gi~a~------------------------TIas~ll~~~~~---~~~l~~~~vlVIDEAsMv~-- 481 (1102)
T PRK13826 438 AEGLEK-------EAGIQSR------------------------TLSSWELRWNQG---RDQLDNKTVFVLDEAGMVA-- 481 (1102)
T ss_pred HHHHHH-------hhCCCee------------------------eHHHHHhhhccC---ccCCCCCcEEEEECcccCC--
Confidence 655422 2233222 222221001111 1346667899999999543
Q ss_pred CcHHHHHHHHHhcC-CCCcEEEEec
Q psy12410 492 GFEPQVMRIIDNVR-PDRQTVMFSA 515 (615)
Q Consensus 492 ~~~~~~~~i~~~~~-~~~q~l~~SA 515 (615)
...+..++.... .+.++|++.=
T Consensus 482 --~~~m~~Ll~~~~~~garvVLVGD 504 (1102)
T PRK13826 482 --SRQMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred --HHHHHHHHHHHHhcCCEEEEECC
Confidence 455666666654 5677777753
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.43 E-value=0.00039 Score=71.23 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 428 (615)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... .....+|+|++|+.+|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889988887 6788999999999999986665555554431 34567999999999999999999887664321
Q ss_pred EEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHH
Q psy12410 429 RVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDML 464 (615)
Q Consensus 429 ~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l 464 (615)
. .............-..+.|+|...+...+
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 75 E------SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp C------CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred c------ccccccccccccccchheeehhhhhhhhh
Confidence 0 00000111122223578888887775433
No 205
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.36 E-value=0.015 Score=73.03 Aligned_cols=208 Identities=12% Similarity=0.117 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 348 KPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
.+++-|..|+..++.. +-.++.|+.|+|||.+. - .+..++. ..|..|++++||-..|..+.+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~-~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~------ 494 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-Q-LLLHLAS------EQGYEIQIITAGSLSAQELRQKI------ 494 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-H-HHHHHHH------hcCCeEEEEeCCHHHHHHHHHHh------
Confidence 6899999999999865 56788899999999872 2 2323333 23778999999988776654432
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV- 504 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~- 504 (615)
++....+ ......+.. .....|...|+ .. ...+...++||||||-.+. ...+..++...
T Consensus 495 -g~~A~Ti------~~~l~~l~~--~~~~~tv~~fl---~~----~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 495 -PRLASTF------ITWVKNLFN--DDQDHTVQGLL---DK----SSPFSNKDIFVVDEANKLS----NNELLKLIDKAE 554 (1960)
T ss_pred -cchhhhH------HHHHHhhcc--cccchhHHHhh---cc----cCCCCCCCEEEEECCCCCC----HHHHHHHHHHHh
Confidence 1111000 011111111 11223333333 11 1345678899999999554 56677777655
Q ss_pred CCCCcEEEEecc--CC-----hHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccC-CCCcE
Q psy12410 505 RPDRQTVMFSAT--FP-----RQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQ-DQGSV 576 (615)
Q Consensus 505 ~~~~q~l~~SAT--~~-----~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~ 576 (615)
..+.++|++.=+ ++ ..+. ++.... -+. +...........+ .+...+.......+...+..+. ....+
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~-~L~~~g-v~t-~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~t 629 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAID-LLKEGG-VTT-YAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNS 629 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHH-HHHHCC-CcE-EEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCce
Confidence 467888887533 32 2233 222221 121 1221111111122 1222233343334444443333 33469
Q ss_pred EEEeCCcchHHHHHHHhh
Q psy12410 577 IVFVDKQENADSLLFHSM 594 (615)
Q Consensus 577 LIF~~s~~~a~~l~~~L~ 594 (615)
+||..+......|....+
T Consensus 630 liv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 630 QVLATTHREQQDLTQIIR 647 (1960)
T ss_pred EEEcCCcHHHHHHHHHHH
Confidence 999999888777776654
No 206
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.27 E-value=0.00082 Score=73.06 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 351 PIQAQAIPAIMS-----G----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 351 ~~Q~~~i~~i~~-----~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
|+|.-++..++. | +.+++.-+=|-|||......++.+++-. ...++.++++++++.-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777762 2 3567788899999998776666666433 24578999999999999999999998
Q ss_pred hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHH
Q psy12410 422 FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRII 501 (615)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 501 (615)
+........... . ...... ....|.....+.++..+....... +=.+..++|+||+|.+-+......+..-+
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~-dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSL-DGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCc-cCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 877532111000 0 000000 012333333233333333332221 22346899999999887544444444444
Q ss_pred HhcCCCCcEEEE-eccC
Q psy12410 502 DNVRPDRQTVMF-SATF 517 (615)
Q Consensus 502 ~~~~~~~q~l~~-SAT~ 517 (615)
.. +++.+++++ ||..
T Consensus 149 ~~-r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 149 GA-RPNPLIIIISTAGD 164 (477)
T ss_pred cc-CCCceEEEEeCCCC
Confidence 44 445665555 3443
No 207
>KOG4368|consensus
Probab=97.26 E-value=0.00045 Score=71.96 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=4.0
Q ss_pred ChHHHHHh
Q psy12410 181 DPLDAFMQ 188 (615)
Q Consensus 181 ~~~~~~~~ 188 (615)
+++..||.
T Consensus 735 DP~E~FRK 742 (757)
T KOG4368|consen 735 DPYENFRK 742 (757)
T ss_pred CcHHHHHH
Confidence 45555554
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.23 E-value=0.0048 Score=54.80 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q psy12410 363 GRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~ 379 (615)
+..+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999975
No 209
>KOG1016|consensus
Probab=97.19 E-value=0.0051 Score=66.78 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=92.1
Q ss_pred cCCCEEEEccCCCchhHH---hHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc---------CcE
Q psy12410 362 SGRDLIGIAKTGSGKTVA---FVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL---------GLR 429 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~---~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~---------~~~ 429 (615)
+|-.+|+.--+|.|||+. |+-.+|.| .....||+|+|-..|-+ |+.++..|...+ .+.
T Consensus 281 sGFGCILAHSMGLGKTlQVisF~diflRh---------T~AKtVL~ivPiNTlQN-WlsEfnmWiP~y~sD~~vrpR~F~ 350 (1387)
T KOG1016|consen 281 SGFGCILAHSMGLGKTLQVISFSDIFLRH---------TKAKTVLVIVPINTLQN-WLSEFNMWIPKYFSDTGVRPRSFE 350 (1387)
T ss_pred CCcceeeeeccccCceeEEeehhHHHhhc---------CccceEEEEEehHHHHH-HHHHhhhhcCCCcccCCCccceeE
Confidence 456788888999999994 33334444 34667999999988854 566677665542 255
Q ss_pred EEEEEcCCChhHHHH----HHhcCCcEEEEChHHHHHHHHhcCC---C-cccC---------------------------
Q psy12410 430 VVCVYGGTGISEQIS----ELKRGAEIIVCTPGRMIDMLAANSG---R-VTNL--------------------------- 474 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~----~l~~~~~Iiv~Tp~~l~~~l~~~~~---~-~~~l--------------------------- 474 (615)
|.++..+.....+.. .+....-|++.-++++.-++..... + ...+
T Consensus 351 vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL 430 (1387)
T KOG1016|consen 351 VFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSAL 430 (1387)
T ss_pred EEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHh
Confidence 666665544333322 2222346777777777544433100 0 0001
Q ss_pred --CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHc
Q psy12410 475 --RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 475 --~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
..-++||+||-|++.+. -..+...+..++..+.+|+....+-+. |+..||
T Consensus 431 ~~PGPDlVICDEGHrIKN~--~A~iS~aLk~IrtrRRiVLTGYPLQNN---LlEYwC 482 (1387)
T KOG1016|consen 431 LEPGPDLVICDEGHRIKNI--TAEISMALKAIRTRRRIVLTGYPLQNN---LLEYWC 482 (1387)
T ss_pred cCCCCCeEEecCCceeccc--hHHHHHHHHHhhhceeEEEeccccccc---hHHHhh
Confidence 12379999999999865 344555566777777777776666543 444444
No 210
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0051 Score=63.25 Aligned_cols=129 Identities=20% Similarity=0.282 Sum_probs=70.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeE-EEEcCc-HHH-HHHHHHHHHHhhhhcCcEEEEEEcCCC
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMA-IIMSPT-REL-CMQIGKEAKKFTKSLGLRVVCVYGGTG 438 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~-lil~Pt-r~L-a~q~~~~~~~~~~~~~~~~~~~~g~~~ 438 (615)
.++.++++||+|+|||....-.+.... .+ +.+| +|-+.| |.- +.| ++.++...++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~-------g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ-------NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc-------CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-------
Confidence 456788999999999987655444332 21 3334 444433 332 333 4445444444322
Q ss_pred hhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 439 ISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 439 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
++.+|..|...+... .....+++||||=|=+.. +......+..+...+.++.-++++|||.
T Consensus 266 --------------~~~dp~dL~~al~~l----~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~ 327 (407)
T PRK12726 266 --------------VATSPAELEEAVQYM----TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM 327 (407)
T ss_pred --------------ecCCHHHHHHHHHHH----HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc
Confidence 123566665555431 123467888888887643 2223455556666665555466778766
Q ss_pred Ch-HHHHHHHH
Q psy12410 518 PR-QMEALARR 527 (615)
Q Consensus 518 ~~-~~~~~~~~ 527 (615)
.. ++..++..
T Consensus 328 ~~~d~~~i~~~ 338 (407)
T PRK12726 328 KSADVMTILPK 338 (407)
T ss_pred cHHHHHHHHHh
Confidence 53 33333333
No 211
>PRK06921 hypothetical protein; Provisional
Probab=97.18 E-value=0.0075 Score=60.03 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=27.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ 414 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 414 (615)
.+.++++.|++|+|||..+. .+.+.+... .+..|+|+.. ..+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 35789999999999998743 344444321 1455666553 344333
No 212
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.17 E-value=0.0016 Score=56.99 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=53.6
Q ss_pred eEEEEEecChhHHHHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 547 VEQHVIVLDEEQKMLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 547 i~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+.+.+.... ..+...+..++.... ..+++||||++...++.++..|...++.+..+||+++..+|..
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREE 69 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 344444443 367777777777654 5679999999999999999999998999999999999888764
No 213
>PHA02533 17 large terminase protein; Provisional
Probab=97.16 E-value=0.0041 Score=67.93 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|.|+|..++..+..++-.++..+=..|||.+.+..++..++.. .+..+++++|+..-|..+++.++.+....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 368999999998876666667777778899998776666555432 35689999999999999988888765543
Q ss_pred C--cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 427 G--LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 427 ~--~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
. +...+.... .....+.+|+.|.+.|-. .. ...=.+..++||||+|.+.+ +...+..+...+
T Consensus 132 P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~---------~~-t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~l 195 (534)
T PHA02533 132 PDFLQPGIVEWN----KGSIELENGSKIGAYASS---------PD-AVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVI 195 (534)
T ss_pred HHHhhcceeecC----ccEEEeCCCCEEEEEeCC---------CC-ccCCCCCceEEEeccccCCC--HHHHHHHHHHHH
Confidence 2 111111000 011122456666555421 10 01112456899999997653 233333343333
Q ss_pred CC--CCcEEEEeccC
Q psy12410 505 RP--DRQTVMFSATF 517 (615)
Q Consensus 505 ~~--~~q~l~~SAT~ 517 (615)
.. ..+++++|.+.
T Consensus 196 asg~~~r~iiiSTp~ 210 (534)
T PHA02533 196 SSGRSSKIIITSTPN 210 (534)
T ss_pred HcCCCceEEEEECCC
Confidence 32 23455555553
No 214
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.058 Score=58.07 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=67.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE-cCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCCh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM-SPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGI 439 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 439 (615)
.|..+.++||||+|||......+..+... ..+.++.++ +.+ +..+..+ +..+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~EQ---Lk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGREQ---LHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHHHH---HHHhhcccCceeEe-------
Confidence 46778899999999999865444433322 112234333 333 4333222 34443333332221
Q ss_pred hHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 440 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
+.++..|...+.. +.++++||||.+-+.... ....++..+.. .....-+|+++++..
T Consensus 413 --------------a~d~~~L~~aL~~-------l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 --------------ADSAESLLDLLER-------LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH 470 (559)
T ss_pred --------------cCcHHHHHHHHHH-------hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC
Confidence 1234445555542 456889999999764311 11223333322 223345778888875
Q ss_pred -hHHHHHHHHHc
Q psy12410 519 -RQMEALARRIL 529 (615)
Q Consensus 519 -~~~~~~~~~~~ 529 (615)
.++..++..|-
T Consensus 471 ~~Dl~eii~~f~ 482 (559)
T PRK12727 471 FSDLDEVVRRFA 482 (559)
T ss_pred hhHHHHHHHHHH
Confidence 35555555553
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0086 Score=58.58 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCccEEEEccccccccCCcHH-HHHHHHHhc-CCCCcEEEEeccCChHHH
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEP-QVMRIIDNV-RPDRQTVMFSATFPRQME 522 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~-~~~~i~~~~-~~~~q~l~~SAT~~~~~~ 522 (615)
+..+++|||||++......+.. .+..|++.- .....||+.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 4568899999999766444443 344455542 334667777765544433
No 216
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0098 Score=66.81 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE-EcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII-MSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li-l~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
+.-+.++||||+|||+++...+..+.... .+.+|.+ -+.| |.-+ .+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv~--------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIGA---LEQLRIYGRILGVPVH--------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchHH---HHHHHHHHHhCCCCcc---------
Confidence 45578899999999998665554443221 1224433 3433 2222 2235555554554332
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCC-
Q psy12410 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFP- 518 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~- 518 (615)
++.+|..+...+.. +.++++|+||=+=+... ......+..+.....+..-+++++||..
T Consensus 247 ------------~~~~~~~l~~al~~-------~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~ 307 (767)
T PRK14723 247 ------------AVKDAADLRFALAA-------LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG 307 (767)
T ss_pred ------------ccCCHHHHHHHHHH-------hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH
Confidence 23366666555542 34567888887776542 2233344444444455556777888864
Q ss_pred hHHHHHHHHH
Q psy12410 519 RQMEALARRI 528 (615)
Q Consensus 519 ~~~~~~~~~~ 528 (615)
..+.+++..|
T Consensus 308 ~~l~~i~~~f 317 (767)
T PRK14723 308 DTLNEVVHAY 317 (767)
T ss_pred HHHHHHHHHH
Confidence 3345555555
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.013 Score=60.05 Aligned_cols=48 Identities=8% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCCccEEEEccccccccCCc-HHHHHHHHHhcC-CCCcEEEEeccCChHH
Q psy12410 474 LRRVTYIVLDEADRMFDMGF-EPQVMRIIDNVR-PDRQTVMFSATFPRQM 521 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~-~~~~~~i~~~~~-~~~q~l~~SAT~~~~~ 521 (615)
+..+++||||+.+......| ...+..|++... ....+|+.|...+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45688999999986653333 345666666543 3455666665544444
No 218
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.04 E-value=0.0015 Score=63.63 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCC-ChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 397 TDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGT-GISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 397 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
...|.+|||+..-.=|..+.+.+..|... +..|+-+++-. -..++...+.. .+.|.||||++|..++..+. ..+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSL 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCc
Confidence 56799999999877777777777776321 23444455443 56677777775 48999999999999997763 678
Q ss_pred CCccEEEEcccc
Q psy12410 475 RRVTYIVLDEAD 486 (615)
Q Consensus 475 ~~~~~lVvDEah 486 (615)
..+.+||||--|
T Consensus 200 ~~l~~ivlD~s~ 211 (252)
T PF14617_consen 200 SNLKRIVLDWSY 211 (252)
T ss_pred ccCeEEEEcCCc
Confidence 999999999765
No 219
>PRK08116 hypothetical protein; Validated
Probab=97.03 E-value=0.024 Score=56.57 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=29.1
Q ss_pred CCCccEEEEccccccccCC-cHHHHHHHHHhc-CCCCcEEEEeccCChHHH
Q psy12410 474 LRRVTYIVLDEADRMFDMG-FEPQVMRIIDNV-RPDRQTVMFSATFPRQME 522 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~ 522 (615)
+..+++||||+++...... ....+..|++.. ....++|+.|...+.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4567899999996432111 234556666653 345667777766555543
No 220
>KOG1131|consensus
Probab=97.00 E-value=0.012 Score=61.44 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
.|...+|-|.+-.-.+. .+-+.++.+|+|+|||.+.+-.++.+.+..+. .-.++|+..-|..=+.....+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHH
Confidence 35566777766554433 55689999999999999977777766666542 23456666555444444445555
Q ss_pred Hhh
Q psy12410 421 KFT 423 (615)
Q Consensus 421 ~~~ 423 (615)
.++
T Consensus 89 ~l~ 91 (755)
T KOG1131|consen 89 RLM 91 (755)
T ss_pred HHH
Confidence 443
No 221
>KOG1001|consensus
Probab=97.00 E-value=0.0041 Score=69.23 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=82.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCC-CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQP-PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
+-.|+....|-|||...+..++.+-.... ......+.-.||+||+-.+ .|+...+.+......+.+.+++| ....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHG---RTKD 228 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHH-HHHHHHHhccCCccceEEEEecc---cccc
Confidence 45688889999999985544443321111 0001234567899997554 67777777777766677777776 2222
Q ss_pred HHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 443 ISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
... ..+.+|||+||+.+.. .+ +. .-.+-.||+||||.+.+.. .+....+-.+...++.+ +|+|+.
T Consensus 229 ~~e-l~~~dVVltTy~il~~----~~--l~-~i~w~Riildea~~ikn~~--tq~~~a~~~L~a~~RWc-LtgtPi 293 (674)
T KOG1001|consen 229 KSE-LNSYDVVLTTYDILKN----SP--LV-KIKWLRIVLDEAHTIKNKD--TQIFKAVCQLDAKYRWC-LTGTPI 293 (674)
T ss_pred cch-hcCCceEEeeHHHhhc----cc--cc-ceeEEEEEeccccccCCcc--hHhhhhheeeccceeee-ecCChh
Confidence 222 2348899999988864 10 01 1234469999999988653 22333333333344443 466654
No 222
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.00 E-value=0.0029 Score=67.26 Aligned_cols=144 Identities=15% Similarity=0.231 Sum_probs=87.1
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH-HHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE-LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
.++.|..|||||.+.++-++..++.. ..+..+||+.|+.. |..-++..+......+++....-...... .+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 67889999999999888888887764 13678999999986 77777788887777666542222111110 11
Q ss_pred HHhc-CCcEEEECh-HHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC--CCCcEEEEeccCChH
Q psy12410 445 ELKR-GAEIIVCTP-GRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR--PDRQTVMFSATFPRQ 520 (615)
Q Consensus 445 ~l~~-~~~Iiv~Tp-~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~--~~~q~l~~SAT~~~~ 520 (615)
.+.. |..|++..- +... ++.....+.+++||||..+. ...+..++..++ .....|++|.|+...
T Consensus 76 ~~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 1122 456666553 1111 11223446899999999774 234444444444 222247888888654
Q ss_pred HHHHHHHHc
Q psy12410 521 MEALARRIL 529 (615)
Q Consensus 521 ~~~~~~~~~ 529 (615)
..-+...|+
T Consensus 144 ~~w~~~~f~ 152 (396)
T TIGR01547 144 LHWVKKRFI 152 (396)
T ss_pred ccHHHHHHH
Confidence 344444444
No 223
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.015 Score=57.67 Aligned_cols=131 Identities=19% Similarity=0.292 Sum_probs=76.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE-cCcH--HHHHHHHHHHHHhhhhcCcEEEEEEcCCC
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM-SPTR--ELCMQIGKEAKKFTKSLGLRVVCVYGGTG 438 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~Ptr--~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 438 (615)
.+..+.+++++|+|||..+.+.+.... . .+..+.++ +.+. ..+.|+ ..++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~-------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~~~------ 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-G-------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVIA------ 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-H-------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceEEe------
Confidence 346789999999999998665444332 1 23334444 3232 344443 3444333433221
Q ss_pred hhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 439 ISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 439 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
..+|..|...+..- .....+++||||-+=+.. +......+..++....++.-++++|||.
T Consensus 136 ---------------~~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ---------------cCCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 13555555544321 123468899999998764 2234566667777666665577799986
Q ss_pred C-hHHHHHHHHHc
Q psy12410 518 P-RQMEALARRIL 529 (615)
Q Consensus 518 ~-~~~~~~~~~~~ 529 (615)
. .++...+..|-
T Consensus 197 ~~~d~~~~~~~f~ 209 (270)
T PRK06731 197 KSKDMIEIITNFK 209 (270)
T ss_pred CHHHHHHHHHHhC
Confidence 5 46667777664
No 224
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.98 E-value=0.00039 Score=63.91 Aligned_cols=136 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred EEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHH
Q psy12410 367 IGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446 (615)
Q Consensus 367 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 446 (615)
|+.|+-|-|||.+..+.+...+ . .....++|.+|+.+-+..+++.+...+...+++........ ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-Q------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 5789999999988555443222 1 12357999999999988887777665555444331100000 000011
Q ss_pred hcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh---HHHH
Q psy12410 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR---QMEA 523 (615)
Q Consensus 447 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~---~~~~ 523 (615)
..+..|-+..|..+... ....++||||||=.+. .+.+..++...+ .++||.|..- .-+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~GYEGtGRg 132 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIHGYEGTGRG 132 (177)
T ss_dssp --CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBSSTTBB-HH
T ss_pred cccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeeccccccCCce
Confidence 12467777788766332 1235799999999776 777888865543 6788888742 2234
Q ss_pred HHHHHcC
Q psy12410 524 LARRILN 530 (615)
Q Consensus 524 ~~~~~~~ 530 (615)
|...++.
T Consensus 133 F~lkf~~ 139 (177)
T PF05127_consen 133 FSLKFLK 139 (177)
T ss_dssp HHHHHHC
T ss_pred eeeehhh
Confidence 5444443
No 225
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.95 E-value=0.021 Score=62.69 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCCCCHHHHHHHHHHH---cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIM---SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~---~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
+...|+|.=.+-|..++ ..+-.++.+|=|.|||.+..+.++..+ .. .+..|+|++|...-+.+++..++.
T Consensus 166 np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~f------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-SF------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-Hh------cCCeEEEECCChhhHHHHHHHHHH
Confidence 44455555555555544 456678889999999998655544333 21 367899999999999999999998
Q ss_pred hhhhc
Q psy12410 422 FTKSL 426 (615)
Q Consensus 422 ~~~~~ 426 (615)
++...
T Consensus 239 ~le~l 243 (752)
T PHA03333 239 VVHAY 243 (752)
T ss_pred HHHHh
Confidence 88744
No 226
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.013 Score=62.27 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc-Cc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS-PT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~-Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
..++++|++|+|||++....+. ++.. .+.+++++. .+ |..+ +..+..++...++.+........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d--- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD--- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC---
Confidence 3578899999999998654443 3322 133444443 33 3332 23355555555554332211111
Q ss_pred HHHHHhcCCcEEEEChHH-HHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 442 QISELKRGAEIIVCTPGR-MIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~-l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
|.. +...+.. +...++||||.|-++. +......+..+.....++.-++.++||...
T Consensus 162 ---------------~~~i~~~al~~-------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 162 ---------------AVEIAKEGLEK-------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ---------------HHHHHHHHHHH-------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 111 1222221 1223677777775432 122344455555555566556666776655
Q ss_pred HHHHHHHHH
Q psy12410 520 QMEALARRI 528 (615)
Q Consensus 520 ~~~~~~~~~ 528 (615)
+....+..|
T Consensus 220 ~av~~a~~F 228 (437)
T PRK00771 220 QAKNQAKAF 228 (437)
T ss_pred HHHHHHHHH
Confidence 544444443
No 227
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.90 E-value=0.01 Score=66.08 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 346 YEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.+.+..-|.+.+..++.. +-+++.|.-|-|||.+.-+.+.. +... .....++|.+|+.+.+..++..+.+-+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~-----~~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARL-----AGSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHh-----cCCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 344444455555666654 35788899999999987766632 2221 114679999999999999888888877
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID 502 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~ 502 (615)
...|++-.+........ .... .+..|=+-+|.... . ..++||||||=.|. .+-+.+++.
T Consensus 286 ~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp----lplL~~l~~ 345 (758)
T COG1444 286 EFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP----LPLLHKLLR 345 (758)
T ss_pred HHhCCccccccccccce---eeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----hHHHHHHHh
Confidence 77776544333221100 0111 11334455553332 1 16799999999776 788888887
Q ss_pred hcCCCCcEEEEeccCC
Q psy12410 503 NVRPDRQTVMFSATFP 518 (615)
Q Consensus 503 ~~~~~~q~l~~SAT~~ 518 (615)
.++ .++||.|+.
T Consensus 346 ~~~----rv~~sTTIh 357 (758)
T COG1444 346 RFP----RVLFSTTIH 357 (758)
T ss_pred hcC----ceEEEeeec
Confidence 754 588999974
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.88 E-value=0.004 Score=54.81 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
+..++++||+|+|||.+.... +..+ . ..+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~-~------~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-AREL-G------PPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-Hhcc-C------CCCCCEEEECCEEcc
Confidence 467899999999999984322 2222 1 111246777766543
No 229
>PRK08727 hypothetical protein; Validated
Probab=96.87 E-value=0.0075 Score=58.92 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCCccEEEEccccccccCC-cHHHHHHHHHhcCC-CCcEEEEeccCChH
Q psy12410 474 LRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVRP-DRQTVMFSATFPRQ 520 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~q~l~~SAT~~~~ 520 (615)
+.++++|||||+|.+.... ....+..+++.+.. ..++|+.|...|..
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 3456799999999876433 23345555555432 33455555444443
No 230
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.87 E-value=0.012 Score=63.28 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=60.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
..+++.|++|+|||... ..+.+.+... ..+.+++|+.+ ..+...+...+..-
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~--------------------- 193 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKT--------------------- 193 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHh---------------------
Confidence 45899999999999763 3344444322 23556666555 45555543333210
Q ss_pred HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhcCC-CCcEEEEeccCChH
Q psy12410 444 SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRP-DRQTVMFSATFPRQ 520 (615)
Q Consensus 444 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~-~~q~l~~SAT~~~~ 520 (615)
. +.+..+. ..+..+++|||||+|.+... .....+..+++.+.. +.|+|+.|-..|..
T Consensus 194 ------~-------~~~~~~~-------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 194 ------H-------KEIEQFK-------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred ------h-------hHHHHHH-------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 0 1111111 12456789999999977532 234566666666543 34555555544433
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0073 Score=59.04 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCCccEEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 474 LRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
+..+++||||++|.+... .+...+..+++.+......++++++.+|
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345679999999977533 3455677888776654345666666544
No 232
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.81 E-value=0.018 Score=60.81 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=34.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc--CcHHHHHHHHHHHHHhhhhcCcEEEEEEcC
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS--PTRELCMQIGKEAKKFTKSLGLRVVCVYGG 436 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 436 (615)
-+.++|++|+|||++..-.+.. +.. .|.+|++++ |.|..|.++ ++.++...++.+...+.+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~-------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~ 164 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR-------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTE 164 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH-------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCC
Confidence 3678899999999875543432 221 244455544 335544444 455555556666554443
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.023 Score=59.46 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeE-EEEcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMA-IIMSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~-lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
.-++++||+|+|||++..-.+..+... .|.+| |+-+.+ |..+..+ +..++...++.+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~eQ---Lk~yAe~lgvp~~~~-------- 285 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAIEQ---LKRYADTMGMPFYPV-------- 285 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHHHH---HHHHHHhcCCCeeeh--------
Confidence 347788999999999866555444322 23334 343433 4444433 555555445433211
Q ss_pred HHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcC---CCCcEEEEeccC
Q psy12410 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVR---PDRQTVMFSATF 517 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~---~~~q~l~~SAT~ 517 (615)
..+..+...+. -..+++||||=+-++. +......+..++..+. +.--++++|||.
T Consensus 286 -------------~~~~~l~~~l~--------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 286 -------------KDIKKFKETLA--------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------------HHHHHHHHHHH--------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 11222333332 1457899999776543 2223455555565542 223578889998
Q ss_pred Ch-HHHHHHHHH
Q psy12410 518 PR-QMEALARRI 528 (615)
Q Consensus 518 ~~-~~~~~~~~~ 528 (615)
.. .+..++..|
T Consensus 345 ~~~~~~~~~~~f 356 (432)
T PRK12724 345 SYHHTLTVLKAY 356 (432)
T ss_pred CHHHHHHHHHHh
Confidence 77 455555544
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.0048 Score=60.15 Aligned_cols=47 Identities=13% Similarity=0.356 Sum_probs=31.2
Q ss_pred CCCccEEEEccccccccC-CcHHHHHHHHHhcCC-CCcEEEEeccCChH
Q psy12410 474 LRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRP-DRQTVMFSATFPRQ 520 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~-~~q~l~~SAT~~~~ 520 (615)
+.++++|||||+|.+... .+...+..+++.+.. ..++|++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999987533 234456676766644 34567788877554
No 235
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.77 E-value=0.024 Score=56.63 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc-C-cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS-P-TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~-P-tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
+-++++|++|+|||.+..-.+.... ..+.+++++. . .|.-+.+ .+..++...++.+.....+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~--------~~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~---- 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK--------KQGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGA---- 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--------hcCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCC----
Confidence 4467889999999997655444332 1244565554 3 3443332 24455555565443221111
Q ss_pred HHHHHhcCCcEEEEChHHH-HHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcC------CCCcEEEE
Q psy12410 442 QISELKRGAEIIVCTPGRM-IDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVR------PDRQTVMF 513 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~------~~~q~l~~ 513 (615)
.|..+ ...+.. .....+++||||=+-++. +......+..+..... ++--++++
T Consensus 138 --------------dp~~~~~~~l~~-----~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl 198 (272)
T TIGR00064 138 --------------DPAAVAFDAIQK-----AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVL 198 (272)
T ss_pred --------------CHHHHHHHHHHH-----HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 12111 122221 113567899999887654 2223456666665554 56668889
Q ss_pred eccCChHHHHHHHHHc
Q psy12410 514 SATFPRQMEALARRIL 529 (615)
Q Consensus 514 SAT~~~~~~~~~~~~~ 529 (615)
+||........+..|.
T Consensus 199 ~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 199 DATTGQNALEQAKVFN 214 (272)
T ss_pred ECCCCHHHHHHHHHHH
Confidence 9997665444555554
No 236
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0033 Score=61.62 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred eEecCCCCCCccccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcC
Q psy12410 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQ 391 (615)
Q Consensus 314 i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~ 391 (615)
+..--..+|..+.+|.+|++++-+.+.+.. .|. +++.||||||||.. +..|+.++...
T Consensus 94 ~a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 94 YALVLRLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cEEEEeccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 444445678999999999999999885543 255 89999999999987 55677787554
No 237
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.022 Score=60.45 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=44.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE-EEcC-cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI-IMSP-TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l-il~P-tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
-++++|++|+|||++..-.+.... . ..|.+++ |-+. .|..+... ++.++...++.+.....+......
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~-~------~~G~kV~lV~~D~~R~aa~eQ---L~~~a~~~gv~v~~~~~~~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLK-K------KKKKKVLLVAADVYRPAAIEQ---LKTLGEQIGVPVFPSGDGQDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-H------hcCCcEEEEEccccchHHHHH---HHHHHhhcCCeEEecCCCCCHHHH
Confidence 367889999999997655444332 1 1133344 4443 34443322 455555567765544222222222
Q ss_pred HH----HH-hcCCc-EEEEChHHH
Q psy12410 443 IS----EL-KRGAE-IIVCTPGRM 460 (615)
Q Consensus 443 ~~----~l-~~~~~-Iiv~Tp~~l 460 (615)
.. .. ..+++ |||=|+|++
T Consensus 172 ~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 172 AKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCc
Confidence 11 11 12454 666788765
No 238
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.73 E-value=0.011 Score=63.82 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=26.7
Q ss_pred CCccEEEEccccccccCC-cHHHHHHHHHhcC-CCCcEEEEeccCChH
Q psy12410 475 RRVTYIVLDEADRMFDMG-FEPQVMRIIDNVR-PDRQTVMFSATFPRQ 520 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~-~~~q~l~~SAT~~~~ 520 (615)
..+++|||||+|.+.... ....+..+++.+. ...++|+.|.+.|..
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~ 257 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKE 257 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 357799999999875432 2344555555543 345555544444444
No 239
>PRK12377 putative replication protein; Provisional
Probab=96.68 E-value=0.0099 Score=58.29 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCCccEEEEccccccccCCc-HHHHHHHHHhc-CCCCcEEEEeccCChH
Q psy12410 474 LRRVTYIVLDEADRMFDMGF-EPQVMRIIDNV-RPDRQTVMFSATFPRQ 520 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~-~~~~~~i~~~~-~~~~q~l~~SAT~~~~ 520 (615)
+..+++|||||++......+ ...+..|++.- .....+|+.|---..+
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 56788999999975432322 33444555443 3346677776544333
No 240
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.06 Score=56.84 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=68.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH-HHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR-ELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr-~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
.|.-+.++||||+|||......+..+++.. ......+|.+.+. .-+.+. +..++..+|+.+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rigalEQ---L~~~a~ilGvp~~~v------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIGGHEQ---LRIYGKLLGVSVRSI------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchhHHHH---HHHHHHHcCCceecC-------
Confidence 456788999999999998654444343322 1122355666653 222222 445555455544332
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
.++..+...+. .+...++++||.+-+.-. .....++..+.....+..-+|++|||...
T Consensus 255 --------------~~~~dl~~al~-------~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~ 313 (420)
T PRK14721 255 --------------KDIADLQLMLH-------ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG 313 (420)
T ss_pred --------------CCHHHHHHHHH-------HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH
Confidence 23333332222 255677889998643211 11223333332222334456889999754
Q ss_pred -HHHHHHHHHc
Q psy12410 520 -QMEALARRIL 529 (615)
Q Consensus 520 -~~~~~~~~~~ 529 (615)
.+..++..|-
T Consensus 314 ~~~~~~~~~f~ 324 (420)
T PRK14721 314 DTLDEVISAYQ 324 (420)
T ss_pred HHHHHHHHHhc
Confidence 4555555553
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=96.68 E-value=0.028 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHH
Q psy12410 360 IMSGRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
+..+.++++.||+|+|||..+...+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4568899999999999998755433
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.67 E-value=0.0091 Score=56.01 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=32.3
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
+++.|++|+|||...+-.+...+ .+|..++|+.. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999997554444444 23666787764 44556666666555
No 243
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.021 Score=51.89 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=23.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
++++|++|+|||......+.... ..+..++|+.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~--------~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA--------TKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH--------hcCCEEEEEECCcc
Confidence 68899999999997554444332 12555666665433
No 244
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.65 E-value=0.015 Score=70.43 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHh--HHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAF--VLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~--~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
.+++-|.+|+..++.. +-+++.|..|+|||.+. ++.++..+.. ..+..|+.++||-..|..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 7999999999999954 77899999999999873 2223332211 2467799999998877665
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.65 E-value=0.012 Score=57.50 Aligned_cols=43 Identities=9% Similarity=0.289 Sum_probs=26.1
Q ss_pred ccEEEEccccccccC-CcHHHHHHHHHhcCC-CCcEEEEeccCCh
Q psy12410 477 VTYIVLDEADRMFDM-GFEPQVMRIIDNVRP-DRQTVMFSATFPR 519 (615)
Q Consensus 477 ~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~-~~q~l~~SAT~~~ 519 (615)
+++|||||+|.+... .+...+..+++.+.. +...|++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 568999999987532 345566667666533 2223555555544
No 246
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.60 E-value=0.01 Score=57.35 Aligned_cols=48 Identities=13% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCccEEEEccccccccCC-cHHHHHHHHHhcC-CCCcEEEEeccCChHH
Q psy12410 474 LRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVR-PDRQTVMFSATFPRQM 521 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~-~~~q~l~~SAT~~~~~ 521 (615)
+..+++||||.+|.+.... ....+..+++.+. .+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4578899999999876532 3456667776653 3556776676666543
No 247
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.56 E-value=0.026 Score=69.28 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
..+++.|..|+..++.+ +-++++|..|+|||.+.- .++..+... ....+..|+.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 47899999999999975 578889999999998732 222222110 012366799999998777654
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.54 E-value=0.017 Score=61.49 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=26.4
Q ss_pred CccEEEEccccccccCC-cHHHHHHHHHhc-CCCCcEEEEeccCChHH
Q psy12410 476 RVTYIVLDEADRMFDMG-FEPQVMRIIDNV-RPDRQTVMFSATFPRQM 521 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~-~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~ 521 (615)
.+++|||||+|.+.... ....+..+++.+ ..+.++|+.|...|..+
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 46799999999876432 233455555554 23456555444444443
No 249
>KOG0989|consensus
Probab=96.53 E-value=0.011 Score=58.27 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC---ChHHHHHHHHHcCCC
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF---PRQMEALARRILNKP 532 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~---~~~~~~~~~~~~~~p 532 (615)
....+.+||+||||.|- ..-|..+.+.+........++++..-+ +..+..-+..|...+
T Consensus 126 ~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMT-SDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred CCCcceEEEEechhhhh-HHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 35667899999999886 335788888888876666677776554 344455555555444
No 250
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.53 E-value=0.0082 Score=68.83 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..|++-|.+|+.. ....++|.|..|||||.+..- -+.+++... ......+|+|+.|+.+|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~-Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTH-RIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999998865 346799999999999998443 334444321 12355799999999999999998888754
No 251
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.45 E-value=0.049 Score=57.76 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=44.5
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH-
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ- 442 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 442 (615)
-++++|++|+|||++..-.+....... +...+||-+.+ |..|.+. +..++...++.+.....+......
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~------g~kV~lV~~D~~R~~a~~Q---L~~~a~~~gvp~~~~~~~~~P~~i~ 171 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ------GKKVLLVACDLYRPAAIEQ---LKVLGQQVGVPVFALGKGQSPVEIA 171 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC------CCeEEEEeccccchHHHHH---HHHHHHhcCCceEecCCCCCHHHHH
Confidence 478889999999998655444422111 12234444443 3333332 445555566665554332222111
Q ss_pred ---HHHH-hcCCc-EEEEChHHH
Q psy12410 443 ---ISEL-KRGAE-IIVCTPGRM 460 (615)
Q Consensus 443 ---~~~l-~~~~~-Iiv~Tp~~l 460 (615)
...+ ..+++ |||=|||++
T Consensus 172 ~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcc
Confidence 1112 23454 667788764
No 252
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.44 E-value=0.012 Score=54.82 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=78.7
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH-HHHHHHHHHHhhhhcCcEEEEEEcCCCh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL-CMQIGKEAKKFTKSLGLRVVCVYGGTGI 439 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-a~q~~~~~~~~~~~~~~~~~~~~g~~~~ 439 (615)
+...++++..++|.|||.+++-.++..+ ..|.+|+|+.=.+-- ..-=...+..+ .++.+.. .|...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~--~g~~~ 86 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHV--MGTGF 86 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCCccCHHHHHhcC---CCcEEEE--CCCCC
Confidence 3456789999999999999887777776 457788888644322 01111222222 1333332 22210
Q ss_pred -hHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEecc
Q psy12410 440 -SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 440 -~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
+.. .....-+............ ...-..+++|||||+=..++.++ ...+..++.+.++..-+|++--.
T Consensus 87 ~~~~-----~~~~e~~~~~~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 87 TWET-----QDRERDIAAAREGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred cccC-----CCcHHHHHHHHHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 000 0000000001111111111 12235789999999998887774 56788888876666666666666
Q ss_pred CChHHHHHHH
Q psy12410 517 FPRQMEALAR 526 (615)
Q Consensus 517 ~~~~~~~~~~ 526 (615)
.|+++.+++.
T Consensus 158 ~p~~Lie~AD 167 (191)
T PRK05986 158 APRELIEAAD 167 (191)
T ss_pred CCHHHHHhCc
Confidence 6766655544
No 253
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.43 E-value=0.014 Score=66.06 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
.+++-|.+|+.. ....++|.|..|||||.+.+.-+. +++... ......+|+|+.|+.+|..+...+..++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIA-HLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999998865 356788999999999998544444 443321 12345799999999999999988887754
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.42 E-value=0.079 Score=52.80 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCC---CCCCCeEEEEcCcHHHHHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE---ETDGPMAIIMSPTRELCMQIGKEA 419 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~---~~~~~~~lil~Ptr~La~q~~~~~ 419 (615)
.+++++|+||-|||.+. -.+....+... ...-|.++|-+|...-....|..|
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 58999999999999873 22222222211 112377788888766555554443
No 255
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.40 E-value=0.013 Score=65.99 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
.-..+++-|..|+-. ...+++|.|..|||||.+.+--+. +++... ...+..+|+|+.|+.+|..+.+.+.....
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAG-WLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 345799999998853 345689999999999998544333 333221 12355899999999999999888877654
Q ss_pred hcCcEEEE
Q psy12410 425 SLGLRVVC 432 (615)
Q Consensus 425 ~~~~~~~~ 432 (615)
..++.+..
T Consensus 267 ~~~v~v~T 274 (684)
T PRK11054 267 TEDITART 274 (684)
T ss_pred CCCcEEEe
Confidence 33344433
No 256
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.40 E-value=0.11 Score=55.69 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
|.-+.++||||+|||++....+..+.... +.....||-+-+ |.-+ .+.+..|+..+++.+...........
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~~~~~Dl~~ 327 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAVKDAADLRL 327 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeeccCCchhHHH
Confidence 45678899999999998665554443322 111223444444 3333 33455556656665554443333333
Q ss_pred HHHHHhcCCcEEEEChHH
Q psy12410 442 QISELKRGAEIIVCTPGR 459 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~ 459 (615)
....+...-.|+|-|+|+
T Consensus 328 aL~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGM 345 (484)
T ss_pred HHHhccCCCeEEeCCCCc
Confidence 333333333455556553
No 257
>KOG0298|consensus
Probab=96.39 E-value=0.008 Score=69.06 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=91.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCC----------CCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEE
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP----------LEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVV 431 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~----------~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 431 (615)
.|+.++..-..|+|||..-+...+.+.-+..+ ......+-.|||+|. ++..||+.+|.+-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 45778888899999999866555444222110 001123568999996 55589999998887754 6776
Q ss_pred EEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC--CCccc-------------CCCcc--EEEEccccccccCCcH
Q psy12410 432 CVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS--GRVTN-------------LRRVT--YIVLDEADRMFDMGFE 494 (615)
Q Consensus 432 ~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~-------------l~~~~--~lVvDEah~~~~~~~~ 494 (615)
.+.|-....-......-.+|||++|+..|...+.... +.... |-.+. -|+||||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 6666221111111112239999999999987765441 11111 11122 289999995543 23
Q ss_pred HHHHHHHHhcCCCCcEEEEeccCChHHHH
Q psy12410 495 PQVMRIIDNVRPDRQTVMFSATFPRQMEA 523 (615)
Q Consensus 495 ~~~~~i~~~~~~~~q~l~~SAT~~~~~~~ 523 (615)
.+....+..++. .-.-++|+|+-..+..
T Consensus 529 S~~a~M~~rL~~-in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA-INRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHhhh-hceeeecCCchhhhhh
Confidence 344444433322 2357789996544443
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.36 E-value=0.044 Score=49.60 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=74.6
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH-HHHHHHHHHHhhhhcCcEEEEEEcCC-----Ch
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL-CMQIGKEAKKFTKSLGLRVVCVYGGT-----GI 439 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-a~q~~~~~~~~~~~~~~~~~~~~g~~-----~~ 439 (615)
+.+..++|.|||.+++-.++..+ ..|.+|+|+.=.+.- ..--...+.++ .++.+...-.+. ..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~--------~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~ 73 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL--------GHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTTEND 73 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCCCCh
Confidence 45567789999999887777776 457788885432221 00011223333 133333321110 11
Q ss_pred hHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC--cHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 440 SEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 440 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
.+..... ......... ......+++|||||+=..++.+ -...+..++.+.++..-+|+++-.+
T Consensus 74 ~~~~~~a-----------~~~~~~a~~----~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 74 EEDIAAA-----------AEGWAFAKE----AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHH-----------HHHHHHHHH----HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1111110 011111111 1234678999999999876666 3567888888877777777777777
Q ss_pred ChHHHHHHH
Q psy12410 518 PRQMEALAR 526 (615)
Q Consensus 518 ~~~~~~~~~ 526 (615)
|+.+.+++.
T Consensus 139 p~~l~e~AD 147 (159)
T cd00561 139 PKELIEAAD 147 (159)
T ss_pred CHHHHHhCc
Confidence 777665543
No 259
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.35 E-value=0.015 Score=53.31 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=39.1
Q ss_pred CCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEeccCChHHHHHHH
Q psy12410 475 RRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFSATFPRQMEALAR 526 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~ 526 (615)
..+++||+||+-..++.++ ...+..++...++..-+|++.-..|+.+.+++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999998877774 467888888877777777776777776655544
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.35 E-value=0.033 Score=59.70 Aligned_cols=49 Identities=12% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCCccEEEEccccccccCC-cHHHHHHHHHhcC-CCCcEEEEeccCChHHH
Q psy12410 474 LRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVR-PDRQTVMFSATFPRQME 522 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~-~~~q~l~~SAT~~~~~~ 522 (615)
+..+++|||||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+.
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3467899999999876432 3445556665443 34566666655555544
No 261
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.051 Score=58.31 Aligned_cols=49 Identities=12% Similarity=0.377 Sum_probs=28.2
Q ss_pred CccEEEEccccccccCC-cHHHHHHHHHhcCC-CCcEEEEeccCChHHHHH
Q psy12410 476 RVTYIVLDEADRMFDMG-FEPQVMRIIDNVRP-DRQTVMFSATFPRQMEAL 524 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~q~l~~SAT~~~~~~~~ 524 (615)
.+++|||||+|.+.+.. ....+..+++.+.. ..++|+.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999876432 23445555555433 345555454444444443
No 262
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.30 E-value=0.035 Score=60.99 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCCccEEEEccccccccCC-cHHHHHHHHHhcCC-CCcEEEEeccCChHH
Q psy12410 474 LRRVTYIVLDEADRMFDMG-FEPQVMRIIDNVRP-DRQTVMFSATFPRQM 521 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~q~l~~SAT~~~~~ 521 (615)
+..+++||||++|.+.... ....+..+++.+.. +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4457899999999876433 24556667766644 466776555544443
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.015 Score=57.40 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=30.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
++.++++.|++|+|||..++. +.+.++.. |. -++++++-+|+.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~-------g~-sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA-------GI-SVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc-------CC-eEEEEEHHHHHHHH
Confidence 678999999999999998543 33444321 33 45556666776665
No 264
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.013 Score=67.31 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
..+.+|||||||.|-. +-...|.+++...+..+.+|+++ |-+.
T Consensus 119 ~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP-QGFNALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHHhCCCCCeEEEEEe-CChh
Confidence 5678999999998763 33456667777766666555544 5433
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.27 E-value=0.024 Score=55.20 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=27.0
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCc-EEEEeccCCh
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ-TVMFSATFPR 519 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q-~l~~SAT~~~ 519 (615)
..++|||||+|.+-.. ....+..+++....... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999986532 24455566655443333 5777777654
No 266
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.023 Score=58.36 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHcCC----CEEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 349 PTPIQAQAIPAIMSGR----DLIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~----~~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
++|||...|..++... -+|+.||.|.|||..+.. +...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 5799999998887442 468999999999987544 3344444
No 267
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.23 E-value=0.027 Score=54.70 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=24.7
Q ss_pred ccEEEEccccccccC-CcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 477 VTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 477 ~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
..+|||||+|.+... .....+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 458999999987543 224556666655432222455666544
No 268
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.20 E-value=0.025 Score=64.52 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+... ......+|+|+.|+..|.++...+...+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC----GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78889988764 356899999999999998554444443221 12356799999999999999998887764
No 269
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.20 E-value=0.038 Score=50.60 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=74.3
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH-HHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ-IGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
+++.-..|-|||.+++-.++..+ +.|-+|+|+.=-+--... -...+..| ...+....+--+.....+..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~--------GhG~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL--------GHGLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh--------cCCCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc
Confidence 55666788889999888888887 668888888633222111 11223333 12222222211111111100
Q ss_pred HHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 445 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 445 ~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
. .++ ..+......... ...-..+++||+||.-.++..++ ...|..++..-++..-+|++--..|+.+-
T Consensus 101 ~----~d~--~aa~~~w~~a~~----~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKE----ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred H----HHH--HHHHHHHHHHHH----HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 0 122 111111111110 11123689999999998877774 46777888766666555555555677766
Q ss_pred HHHHH
Q psy12410 523 ALARR 527 (615)
Q Consensus 523 ~~~~~ 527 (615)
+++..
T Consensus 171 e~ADl 175 (198)
T COG2109 171 ELADL 175 (198)
T ss_pred HHHHH
Confidence 65543
No 270
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.18 E-value=0.058 Score=59.08 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=81.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc--CcEEEEEEcCCCh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL--GLRVVCVYGGTGI 439 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~g~~~~ 439 (615)
..+-.++..|==.|||.+.. +++..++.. ..|..++|++|.+..+..+++++..++... +..+..+.| ...
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 34456788888899999755 555544432 238899999999999999999999876643 111222222 111
Q ss_pred hHHHHHHhcC--CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 440 SEQISELKRG--AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 440 ~~~~~~l~~~--~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
.....+| ..|.++|- .+.. ...=..+++||||||+.+-+ ..+..+.-.+..- +.++|++|.|.
T Consensus 326 ---~i~f~nG~kstI~FaSa--------rntN-siRGqtfDLLIVDEAqFIk~-~al~~ilp~l~~~--n~k~I~ISS~N 390 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS--------HNTN-GIRGQDFNLLFVDEANFIRP-DAVQTIMGFLNQT--NCKIIFVSSTN 390 (738)
T ss_pred ---EEEecCCCccEEEEEec--------cCCC-CccCCcccEEEEechhhCCH-HHHHHHHHHHhcc--CccEEEEecCC
Confidence 0111223 35666541 1100 01123688999999997763 2233333333332 78899999886
Q ss_pred Ch
Q psy12410 518 PR 519 (615)
Q Consensus 518 ~~ 519 (615)
+.
T Consensus 391 s~ 392 (738)
T PHA03368 391 TG 392 (738)
T ss_pred CC
Confidence 53
No 271
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.17 E-value=0.037 Score=59.19 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHc------C----CCEEEEccCCCchhHHhH-HHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMS------G----RDLIGIAKTGSGKTVAFV-LPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~------~----~~~i~~a~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
..+-|+|.-++..|+. | +-.++..|-+-|||..+. +.+...++.. ..+-.+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 4678999999999882 1 245777888889998655 4444455443 4577899999999998888
Q ss_pred HHHHHHhhhhcCcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcH
Q psy12410 416 GKEAKKFTKSLGLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFE 494 (615)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~ 494 (615)
+..++..+.... ..... ..+. ....|.+.--...+..+...... .+=.+..+.||||.|...+.+
T Consensus 135 F~~ar~mv~~~~-~l~~~----------~~~q~~s~~i~~~~~~s~ik~~aa~~~~-~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 135 FNPARDMVKRDD-DLRDL----------CNVQTHSRTITHRKTDSTIKAVAADPNT-VDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred hHHHHHHHHhCc-chhhh----------hccccceeEEEecccceeeeeeccCCCc-ccCCCcceEEEehhhhhcCHH--
Confidence 888877655432 00000 0000 01122222222223334333222 233457799999999876542
Q ss_pred HHHHHHHHhc--CCCCcEEEEec
Q psy12410 495 PQVMRIIDNV--RPDRQTVMFSA 515 (615)
Q Consensus 495 ~~~~~i~~~~--~~~~q~l~~SA 515 (615)
..+..+..-+ +++.+++.+|-
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 4555554443 45677777654
No 272
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.16 E-value=0.026 Score=64.45 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=70.0
Q ss_pred HhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh------
Q psy12410 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR------ 519 (615)
Q Consensus 446 l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~------ 519 (615)
++....|+++||..|..-|..+ .+++..|+.|||||||++........+..++...++..-+.+|||.+..
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~ 80 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFS 80 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchH
Confidence 4445789999999996655544 3789999999999999998777788888888888888889999999863
Q ss_pred HHHHHHHHHcCCCEEEEE
Q psy12410 520 QMEALARRILNKPIEIQV 537 (615)
Q Consensus 520 ~~~~~~~~~~~~p~~i~~ 537 (615)
.+...++.++-.-+.+..
T Consensus 81 ~l~~vmk~L~i~~v~l~p 98 (814)
T TIGR00596 81 PLETKMRNLFLRHVYLWP 98 (814)
T ss_pred HHHHHHHHhCcCeEEEeC
Confidence 467777777666665543
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.13 E-value=0.066 Score=60.46 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=21.9
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~S 514 (615)
..+.+|||||+|.|...+ ...+..++... ....+++++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEE
Confidence 346789999999887532 33344444422 1234444443
No 274
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.031 Score=58.28 Aligned_cols=47 Identities=11% Similarity=0.289 Sum_probs=33.8
Q ss_pred CccEEEEccccccccC-CcHHHHHHHHHhcCCC-CcEEEEeccCChHHH
Q psy12410 476 RVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPD-RQTVMFSATFPRQME 522 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~-~q~l~~SAT~~~~~~ 522 (615)
++++|+||.++.+... .....+..+++.+... .|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999987644 3567777888877654 477777766665544
No 275
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.065 Score=58.17 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.6
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
.+|++||.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999998654
No 276
>PF13173 AAA_14: AAA domain
Probab=96.05 E-value=0.06 Score=47.10 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=27.0
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
.-.+|||||+|.+.+ +...+..+.... ++.++|+++...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccch
Confidence 456899999998864 467777777754 556666655443
No 277
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.05 E-value=0.13 Score=47.59 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHH
Q psy12410 475 RRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRI 528 (615)
Q Consensus 475 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 528 (615)
...++||+|....+. +......+..+.....++.-+++++|.........+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356788899888643 222344444444444455556667776555444444444
No 278
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.027 Score=60.08 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.2
Q ss_pred EEEEccCCCchhHHhHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLP 383 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~ 383 (615)
+|++||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999986543
No 279
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.074 Score=57.34 Aligned_cols=44 Identities=9% Similarity=0.211 Sum_probs=26.3
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
.....++||||+|.|-.. -...+.+.+..-++...+| |.+|-+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fI-latte~~ 157 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFI-LATTEVK 157 (491)
T ss_pred cCCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEE-EEeCChH
Confidence 467889999999977532 2344555555544444444 4445433
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.03 E-value=0.066 Score=54.94 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+|||||+|.+........+..++...+..+++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999998733333455666677766666655544
No 281
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.03 E-value=0.044 Score=68.97 Aligned_cols=63 Identities=27% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhH--HHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFV--LPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~--l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
..+++.|..|+..++.+ +-++++|..|+|||.+.. +-.+..++. ..+..|+.++||-..|..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH------hcCCeEEEEeChHHHHHHH
Confidence 47999999999999865 556788999999998741 122222222 2367899999997777654
No 282
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.99 E-value=0.022 Score=57.04 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=56.7
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
..|.-+++.|++|+|||...+..+.+.+. ..+..|+|+.- ..-..++...+........+......... ..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~-------~~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~ 98 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLIT-------QHGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIY-TL 98 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHH-------hcCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCccccc-cH
Confidence 34667899999999999875544444432 12556777753 22234444444333222222111000001 11
Q ss_pred HHH----HHHhcCCcE-EEE-----ChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 441 EQI----SELKRGAEI-IVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 441 ~~~----~~l~~~~~I-iv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
..+ ..+.....+ ++- |+..+...+... ..-..+++||||-++.+..
T Consensus 99 ~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~----~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 99 EEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM----AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH----HhcCCceEEEECCHHHHhc
Confidence 111 122111122 221 455555555432 1123678999999997753
No 283
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.021 Score=52.78 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=61.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 445 (615)
.++++|+.||||...+--+.++. ..+.++++..|-.. . . ++...+.-.-|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD----~------R---~~~~~V~Sr~G~~------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAID----T------R---YGVGKVSSRIGLS------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEecccc----c------c---cccceeeeccCCc-------
Confidence 57889999999998555554443 33667888888411 1 1 1222222222221
Q ss_pred HhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 446 l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
-.-++|-.+..+...+.... ....+.+|.||||+- ++.....++..+...+
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred ---ccceecCChHHHHHHHHhcc----cCCCcCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 14566667777777777542 122288999999994 4344455555555553
No 284
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.06 Score=60.18 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
..+.+|||||+|.|... -...+.+++..-+....+| |++|
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FI-LaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFI-LATT 157 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEE-EEEC
Confidence 45789999999977533 2455666666655555444 4444
No 285
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.042 Score=62.54 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChH
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~ 520 (615)
..+.++||||||.|- .+-...+.+++..-+..+.+|+ ..|-+..
T Consensus 118 gk~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFIL-aTTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLL-ATTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEE-ECCCchh
Confidence 457899999999875 2234555566665444554444 3554443
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.94 E-value=0.056 Score=55.98 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
....+|||||+|.+.. .....+..++...+....+|+++
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4567999999997753 23455666676666556555443
No 287
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.93 E-value=0.17 Score=51.78 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE-cCc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM-SPT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
+.-+.++||+|+|||+.....+.... ..+.+|+++ +.+ +..+.+. +..+....++.+.....+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~--------~~g~~V~Li~~D~~r~~a~eq---l~~~a~~~~i~~~~~~~~~--- 179 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK--------AQGKKVLLAAGDTFRAAAIEQ---LQVWGERVGVPVIAQKEGA--- 179 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH--------hcCCeEEEEecCccchhhHHH---HHHHHHHcCceEEEeCCCC---
Confidence 44577889999999987543333222 124455555 444 4433222 3333333455444332111
Q ss_pred HHHHHHhcCCcEEEEChHH-HHHHHHhcCCCcccCCCccEEEEcccccccc-CCcHHHHHHHHHhc------CCCCcEEE
Q psy12410 441 EQISELKRGAEIIVCTPGR-MIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNV------RPDRQTVM 512 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~-l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~------~~~~q~l~ 512 (615)
.|.. ..+.+.. .....+++||||=+-++.. ......+..+...+ .+.--+++
T Consensus 180 ---------------dpa~~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LV 239 (318)
T PRK10416 180 ---------------DPASVAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLV 239 (318)
T ss_pred ---------------CHHHHHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEE
Confidence 1111 1122211 1135678999999887642 22334555554432 23445788
Q ss_pred EeccCChHHHHHHHHHc
Q psy12410 513 FSATFPRQMEALARRIL 529 (615)
Q Consensus 513 ~SAT~~~~~~~~~~~~~ 529 (615)
++||.....-.-+..|.
T Consensus 240 l~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 240 LDATTGQNALSQAKAFH 256 (318)
T ss_pred EECCCChHHHHHHHHHH
Confidence 89997654333444443
No 288
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.91 E-value=0.028 Score=49.11 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHh
Q psy12410 366 LIGIAKTGSGKTVAF 380 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~ 380 (615)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999873
No 289
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.065 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.|+++.|+||+|||.+. ..++..+
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHH
Confidence 47999999999999883 3344444
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.85 E-value=0.041 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRH 387 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~ 387 (615)
++.++++||||+|||.+....+..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999765444444
No 291
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.11 Score=57.52 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.0
Q ss_pred CEEEEccCCCchhHHhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~ 384 (615)
-+|++||.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999999865443
No 292
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.84 E-value=0.13 Score=51.44 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHH----cCC-CEEEEccCCCchhHHhH
Q psy12410 348 KPTPIQAQAIPAIM----SGR-DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~-~~i~~a~TGsGKT~~~~ 381 (615)
.+++.+.+++..+. .+. .++++|++|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 46666666666553 233 58899999999998743
No 293
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.031 Score=61.51 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=24.9
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+.++||||+|.|.... ...+.++++.-+..+.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEe
Confidence 3567899999999876332 344555555544555555554
No 294
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.82 E-value=0.065 Score=53.36 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
.++++.||+|+|||.++-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999987543
No 295
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.14 Score=56.68 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=16.3
Q ss_pred CEEEEccCCCchhHHhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~ 384 (615)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865444
No 296
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.06 Score=59.42 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
.....++||||||.|-. +-...+.+++...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~-~A~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT-AGFNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCH-HHHHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 45678999999997763 23445556666555555444444 5443
No 297
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.046 Score=55.97 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
.++|+.||.|+|||.++-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3689999999999988643
No 298
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.11 Score=52.93 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHH----cCC---CEEEEccCCCchhHHhHHHHHHHHhcC
Q psy12410 347 EKPTPIQAQAIPAIM----SGR---DLIGIAKTGSGKTVAFVLPLLRHILDQ 391 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~~ 391 (615)
..++|+|..+|..+. +++ -+++.||.|.||+..+.. +...++..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~ 53 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLAS 53 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCC
Confidence 468899999988766 343 478999999999987543 44455543
No 299
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.75 E-value=0.033 Score=58.77 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhH
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
.-+-.....++..+..++++|+.|++|+|||.++.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34555566677778889999999999999998754
No 300
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.74 E-value=0.051 Score=62.37 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..+++-|.+|+... ...++|.|..|||||.+..--+ .+++... ......+|+|+-|+.+|..+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ri-a~Li~~~---~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRI-AWLMQVE---NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcC---CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999988643 4679999999999999844333 3444321 12345799999999999999999988765
No 301
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.11 Score=57.98 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=24.7
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
..+.++||||||+|... -...+.+++..-+....+|+ ..|-
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL-~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLL-ATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEE-ecCC
Confidence 46789999999987632 24455556665444443443 3443
No 302
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.69 E-value=0.12 Score=47.53 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=66.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 445 (615)
+.+....|-|||.+++-.++..+ +.|-+|+|+.=.+-- -.+-++..+....++.+..+--+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH
Confidence 44555689999999888888877 678889998755440 11122222221112333221111100000000
Q ss_pred HhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEeccCChHHHH
Q psy12410 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFSATFPRQMEA 523 (615)
Q Consensus 446 l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~ 523 (615)
.+ .......+.... ....-..+++||+||+-..++.++ ...+..++...++..-+|++--.+|+.+.+
T Consensus 76 ----~~-----~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 76 ----ED-----RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp ----HH-----HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred ----HH-----HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 01 111112221110 012235799999999998887774 467888888777777677766667776655
Q ss_pred HHH
Q psy12410 524 LAR 526 (615)
Q Consensus 524 ~~~ 526 (615)
.+.
T Consensus 146 ~AD 148 (172)
T PF02572_consen 146 AAD 148 (172)
T ss_dssp H-S
T ss_pred hCC
Confidence 443
No 303
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.064 Score=59.62 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
...+.++||||+|.|-. +-...+.+++..-++...+| |.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~-~a~naLLk~LEepp~~~~fI-l~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST-NAFNALLKTLEEPPPHVKFI-FATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCH-HHHHHHHHHHHcCCCCeEEE-EEeCCh
Confidence 45688999999997652 23455666666655555444 444533
No 304
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.61 E-value=0.15 Score=49.61 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.|.-+++.|++|+|||+..+-.+.. ++. ++.++++++. .+-..++.+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~-------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQ-------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh-------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 3567899999999999874433333 322 3566788874 33334555545443
No 305
>PRK04195 replication factor C large subunit; Provisional
Probab=95.60 E-value=0.092 Score=57.27 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.+|+.||+|+|||.++
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999874
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.053 Score=59.17 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=25.5
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
..+.++||||||.|... ....+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 46789999999977632 2445666666655565555544
No 307
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.53 E-value=0.073 Score=50.70 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
++|+.||.|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999998743
No 308
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.45 E-value=0.12 Score=50.69 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=30.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc---CcHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS---PTRELCMQI 415 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~---Ptr~La~q~ 415 (615)
.|.-+++.|++|+|||...+-.+++.+.. .+..++|+. |..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHHH
Confidence 35567899999999998755545554432 155678887 344444443
No 309
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.44 E-value=0.047 Score=55.78 Aligned_cols=65 Identities=29% Similarity=0.351 Sum_probs=42.7
Q ss_pred HHHHHCCCCCCCHHHHHHHHHH-HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 339 DALKKQNYEKPTPIQAQAIPAI-MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 339 ~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
..|...|+ +++.|...+..+ ..+.+++++|+||||||.. +-.++.++... ....++++|-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 34444455 567777777654 4678999999999999965 34444444222 224467777787776
No 310
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.025 Score=56.98 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIMSGR-DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ 414 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 414 (615)
.|..+++-|...+-.+..++ |+|++|.||||||+. +-.++.++ ...-++|+|=-|.+|-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i--------~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI--------DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC--------CCcccEEEEeehhhhccC
Confidence 46679999999998887665 999999999999986 12222222 123379999999888544
No 311
>PTZ00293 thymidine kinase; Provisional
Probab=95.43 E-value=0.089 Score=49.88 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|+=.++.||++||||.-.+-.+.++.. .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~--------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY--------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH--------cCCceEEEEec
Confidence 444688999999999875554444442 35668888885
No 312
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.42 E-value=0.11 Score=57.88 Aligned_cols=40 Identities=5% Similarity=0.142 Sum_probs=25.5
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
+....+|||||+|.|.. .-...+.+++...+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~-~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK-SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCH-HHHHHHHHHHHhCCCCcEEEEEe
Confidence 45678999999997653 22345566666655556555544
No 313
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.42 E-value=0.14 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
++++++.|++|+|||..+. .+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999998744 3444443
No 314
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.22 Score=52.89 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
+....+|||||||.|-.. ....+.+.+...++.. +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~-~~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA-AFNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHH-HHHHHHHHHhcCCCCe-EEEEEeC
Confidence 466789999999988632 2334444555444433 3344444
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.40 E-value=0.061 Score=54.83 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 341 LKKQNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 341 l~~~~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
+...|. +++.|...|..++ .+.++|++|+||||||... -.++.++...+ .+-++++|=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 334444 6677877776654 6679999999999999873 33445543221 234677777777763
No 316
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.42 Score=48.14 Aligned_cols=128 Identities=17% Similarity=0.305 Sum_probs=75.8
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC--cHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP--TRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISEQ 442 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P--tr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 442 (615)
++++|-.|+|||+...-.+..+ . .+|.+||+.+- .|+.|..+ +.-|....|+.++.- +|+.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l--~------~~g~~VllaA~DTFRAaAiEQ---L~~w~er~gv~vI~~~~G~D----- 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYL--K------QQGKSVLLAAGDTFRAAAIEQ---LEVWGERLGVPVISGKEGAD----- 205 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHH--H------HCCCeEEEEecchHHHHHHHH---HHHHHHHhCCeEEccCCCCC-----
Confidence 5778999999999854333333 2 23566666653 36666555 555555567666542 2222
Q ss_pred HHHHhcCCcEEEEChHH-HHHHHHhcCCCcccCCCccEEEEccccccccC-CcHHHHHHHHHhcCCCC------cEEEEe
Q psy12410 443 ISELKRGAEIIVCTPGR-MIDMLAANSGRVTNLRRVTYIVLDEADRMFDM-GFEPQVMRIIDNVRPDR------QTVMFS 514 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~-l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~------q~l~~S 514 (615)
|.. ..+.+.. ..-+.+++|++|=|-||-+. +....+.+|.+-+.+.. -++.+=
T Consensus 206 --------------pAaVafDAi~~-----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 206 --------------PAAVAFDAIQA-----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred --------------cHHHHHHHHHH-----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 211 1233332 22456788999988887643 35677888877776654 344448
Q ss_pred ccCChHHHHHHHHH
Q psy12410 515 ATFPRQMEALARRI 528 (615)
Q Consensus 515 AT~~~~~~~~~~~~ 528 (615)
||...+.-.-++.|
T Consensus 267 AttGqnal~QAk~F 280 (340)
T COG0552 267 ATTGQNALSQAKIF 280 (340)
T ss_pred cccChhHHHHHHHH
Confidence 88876654444444
No 317
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.064 Score=58.40 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=16.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHh
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
+|++||.|+|||.++.+ +..++.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 49999999999998543 344443
No 318
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.38 E-value=0.15 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCEEEEccCCCchhHHhH
Q psy12410 355 QAIPAIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 355 ~~i~~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
.++..+..+.++++.|++|+|||.++.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344556688999999999999999854
No 319
>KOG0733|consensus
Probab=95.36 E-value=0.28 Score=52.89 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=31.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|++.|--..+...|.-. .+..|- +.+++-.- .-..+|++||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd--~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPD--LFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHH--HHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 456799988666665544321 222222 22222111 1346899999999999873
No 320
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.36 E-value=0.041 Score=57.19 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
|..+.++.++++++.+.+.+. ..+..++++||||||||... -.++.++.
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 445566777777765544432 13455999999999999873 33555553
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.34 E-value=0.1 Score=51.05 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|..+++.|++|+|||+..+-.++..+ .+|-.+||++ +.+-..++.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~--------~~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--------HcCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 46789999999999997655555554 2356678877 445566776666654
No 322
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.06 Score=59.40 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=25.5
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
....++||||||+|... -...+.+++...+....+| |.+|-
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FI-LaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFL-FATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEE-EEECC
Confidence 45789999999977532 3445666666655555444 44453
No 323
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.31 E-value=0.082 Score=60.86 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..|++-|..|+... ...++|.|..|||||.+..--+.+.+ ... ....-++|+|+-|+..|..+.+.+..++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li-~~~---~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLI-AEK---NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHH-HcC---CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999988753 56799999999999998554444333 321 12235799999999999999998888765
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.27 E-value=0.11 Score=55.80 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|.-+++.|++|+|||+..+..+.... . .+.++||+.- .+...|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-A-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-h-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 45678899999999997554444332 1 2557888874 44556765555554
No 325
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.26 E-value=0.18 Score=53.87 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+|+.||+|+|||.++.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998744
No 326
>KOG0742|consensus
Probab=95.25 E-value=0.046 Score=55.79 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHH
Q psy12410 364 RDLIGIAKTGSGKTVA 379 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~ 379 (615)
+|+++.+|.|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999987
No 327
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.12 Score=57.51 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
+....+|||||+|.|... -...+.+.+...++.+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 567889999999987632 2445556666655666555544
No 328
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.14 Score=53.65 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
.....+|||||||.|.... ...+.+.+...++...+|+ .+|
T Consensus 117 ~~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl-~t~ 157 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFIL-ATT 157 (363)
T ss_pred cCCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEE-EcC
Confidence 3457799999999876322 3345555555444444444 444
No 329
>PLN03025 replication factor C subunit; Provisional
Probab=95.21 E-value=0.2 Score=51.42 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=24.5
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
...+|||||||.|... -...+..++...+....+ +|+++.
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~-il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRF-ALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceE-EEEeCC
Confidence 4679999999987632 244555666554444444 444443
No 330
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.19 E-value=0.045 Score=60.46 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH-HHHHHhhh
Q psy12410 348 KPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG-KEAKKFTK 424 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~-~~~~~~~~ 424 (615)
..+|+|.+.+.++-.. +.++++.++-+|||.+.+. ++.+.+.+ ...-+|++.||..+|.... ..|..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6789999988888643 6789999999999996444 33333333 2345899999999998875 44554444
No 331
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.13 Score=53.26 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
.....+|||||||.|-. .-...+.+++..-+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~-~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR-NAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCH-HHHHHHHHHHhcCCCCceEEEEE
Confidence 35678999999998752 23455666666644455555554
No 332
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.17 Score=54.62 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.7
Q ss_pred EEEEccCCCchhHHhHH
Q psy12410 366 LIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l 382 (615)
+|++||.|+|||.++.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999998544
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=95.06 E-value=0.18 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.1
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLP 383 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~ 383 (615)
+.++++.||+|+|||.++...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999986543
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.06 E-value=0.053 Score=52.66 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc-----CcEEEEEEcCC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL-----GLRVVCVYGGT 437 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-----~~~~~~~~g~~ 437 (615)
|..+++.|++|+|||+..+-.+.+.+... +-+++|++- .+-..++.+.+..+.-.. .-.+..+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccc
Confidence 46789999999999998666566665320 445777773 333456655555542100 00011111111
Q ss_pred ChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC----CcHHHHHHHHHhcCCCCcEEEE
Q psy12410 438 GISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM----GFEPQVMRIIDNVRPDRQTVMF 513 (615)
Q Consensus 438 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~----~~~~~~~~i~~~~~~~~q~l~~ 513 (615)
..... . -..+..+...+... ..-.....||||-...+... .+...+..++..++....++++
T Consensus 91 ~~~~~--------~--~~~~~~l~~~i~~~----i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ll 156 (226)
T PF06745_consen 91 ERIGW--------S--PNDLEELLSKIREA----IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLL 156 (226)
T ss_dssp GGST---------T--SCCHHHHHHHHHHH----HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccc--------c--ccCHHHHHHHHHHH----HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 00000 0 12334444433321 11122379999999876221 2445566666666555556677
Q ss_pred eccC
Q psy12410 514 SATF 517 (615)
Q Consensus 514 SAT~ 517 (615)
++..
T Consensus 157 t~~~ 160 (226)
T PF06745_consen 157 TSEM 160 (226)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 6663
No 335
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.01 E-value=0.068 Score=64.90 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
++|+-|.+||. ..+.+++|.|..|||||.+.+--++..+... ..--.+|+|+=|+..|..+...+....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 36889999997 3688999999999999999776677666532 122469999999999988776666543
No 336
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.99 E-value=0.11 Score=52.61 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=41.4
Q ss_pred HHHHCCCCCCCHHHHHHHHHH-HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 340 ALKKQNYEKPTPIQAQAIPAI-MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 340 ~l~~~~~~~~~~~Q~~~i~~i-~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
.|...|. +++.|...|..+ ..+.+++++|+||||||... -.++.++... ...-++++|=.+.+|.
T Consensus 110 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 110 DYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 3344443 556666666554 45679999999999999873 3344444221 1244688888888874
No 337
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.97 E-value=0.12 Score=47.54 Aligned_cols=132 Identities=15% Similarity=0.186 Sum_probs=74.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH-HHHHHHhhhhcCcEEEEEEcCCC------
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI-GKEAKKFTKSLGLRVVCVYGGTG------ 438 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~~~~~~~~~~~~~~~~g~~~------ 438 (615)
+.+.-..|-|||.+++-.++..+ +.|.+|+|+.=.+.-...- ...+..+ . ++.+... |..
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa--------G~G~rV~iiQFlKg~~~~GE~~~l~~~-~--~v~~~~~--g~~~~~~~~ 90 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA--------GQGTPVLIVQFLKGGIQQGPDRPIQLG-Q--NLDWVRC--DLPRCLDTP 90 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh--------cCCCEEEEEEEecCCCcchHHHHHHhC-C--CcEEEEC--CCCCeeeCC
Confidence 44445689999999888888876 6788999987444321111 1112222 1 3333321 111
Q ss_pred -hh-HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEe
Q psy12410 439 -IS-EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 439 -~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~S 514 (615)
.. ..... .......... ...-..+++||+||+-..++.++ ...+..++.+.++..-+|++-
T Consensus 91 ~~~~~~~~~-----------~~~~~~~a~~----~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTG 155 (178)
T PRK07414 91 HLDESEKKA-----------LQELWQYTQA----VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTG 155 (178)
T ss_pred CcCHHHHHH-----------HHHHHHHHHH----HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEEC
Confidence 00 11000 0111111111 12235689999999998887774 467888888877777677766
Q ss_pred ccCChHHHHHH
Q psy12410 515 ATFPRQMEALA 525 (615)
Q Consensus 515 AT~~~~~~~~~ 525 (615)
-.+|+.+.+++
T Consensus 156 R~~p~~Lie~A 166 (178)
T PRK07414 156 PEMPESLLAIA 166 (178)
T ss_pred CCCCHHHHHhC
Confidence 67777665444
No 338
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.96 E-value=0.21 Score=45.76 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=27.7
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
....++|||+||.|-. .....+.++++.-+....+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5688999999998762 23566777777766666555555443
No 339
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.93 E-value=0.15 Score=54.11 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.++++.||+|+|||.+. ..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999973 3344443
No 340
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.92 E-value=0.071 Score=55.54 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
|..+.++.++|+++.+++.+.. .+..++++||||||||... -.++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~~------------------~~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLLP------------------AAGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHHh------------------cCCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 3344467778887776554321 2345899999999999873 445666543
No 341
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.18 Score=55.24 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=25.8
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
.....+|||||||+|-.. -...+.+++...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999987632 3455666666655555455444
No 342
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.88 E-value=0.22 Score=56.62 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=23.8
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
...+|||||+|++.. .+...++..+. ..++++++||-.+
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCC
Confidence 456899999998752 22233333332 3457777777544
No 343
>PHA02244 ATPase-like protein
Probab=94.86 E-value=0.27 Score=50.71 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=20.6
Q ss_pred HHHHHHcCCCEEEEccCCCchhHHhH
Q psy12410 356 AIPAIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 356 ~i~~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++..+.++++.||||+|||.++.
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 33445578899999999999998743
No 344
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.86 E-value=0.44 Score=49.61 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEeccCChH
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQ 520 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~ 520 (615)
....+|++||+|. -|-+-.--+..++..+ ..+.-+|++|.+.|.+
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 4466899999993 3444344555566554 4466677788887754
No 345
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.12 Score=56.86 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=25.2
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
.....++||||||.|... -...+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 356789999999987632 2344555565545555555544
No 346
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.09 Score=54.03 Aligned_cols=40 Identities=10% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
.....+|||||||.|-. +-...+.+.+..-+....+|+++
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 35688999999998763 23445555555544455444444
No 347
>PRK05973 replicative DNA helicase; Provisional
Probab=94.81 E-value=0.17 Score=49.10 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
.+||... +..-+..|.-+++.|++|+|||+..+-.+.+.+ .+|..++|+.- .+-..|+...+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a--------~~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM--------KSGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH--------hcCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 4555332 333444566788899999999998655555544 23556777753 23346666666655
No 348
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=0.25 Score=50.53 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
.....++|||+||.|-. .-...+.+++..-++...+|++|
T Consensus 105 ~g~~KV~iI~~a~~m~~-~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTE-AAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCH-HHHHHHHHHhcCCCCCeEEEEEE
Confidence 45678999999998862 23556666666645555444444
No 349
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.77 E-value=0.15 Score=53.41 Aligned_cols=133 Identities=17% Similarity=0.090 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
+-.+...|..+.-..-.|.. .+.|=.|||||.+.++-+. ++... +..-+++|.+-|+.|+.++...+.+|+-.
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f~ 232 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFFM 232 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHHH
Confidence 44566677776555545554 6677789999998544333 33222 33668999999999999998888888743
Q ss_pred c--------CcEEEEEEcCCChhHHH---HHHhcCCcEEEEChH----HH-HHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 426 L--------GLRVVCVYGGTGISEQI---SELKRGAEIIVCTPG----RM-IDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 426 ~--------~~~~~~~~g~~~~~~~~---~~l~~~~~Iiv~Tp~----~l-~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
. .+-++--+||....... ..+..-..|-++--+ .+ -.++.. ..+..-+++|.|||++-+.
T Consensus 233 ~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~----~~~~~~yD~ilIDE~QDFP 308 (660)
T COG3972 233 RVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD----INNKKAYDYILIDESQDFP 308 (660)
T ss_pred HhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh----hhccccccEEEecccccCC
Confidence 2 23333344554433322 121111223222111 11 122222 1336678999999999765
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.17 Score=56.19 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
...+.++||||+|.|.... ...+.+.+..-+....+| |.+|-+.
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fI-L~Ttd~~ 165 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFV-LATTDPQ 165 (618)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEE-EEECCch
Confidence 3568899999999876322 333444444434444444 4445433
No 351
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.69 E-value=0.31 Score=52.20 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=24.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
|.-+++.|++|+|||...+-.+.+.... .+..|+|+.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~-------~g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR-------EGKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 4557888999999998765555444322 244567765
No 352
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.39 Score=53.72 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
..+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3579999999999998544
No 353
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.67 E-value=0.43 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.++++.||+|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998764
No 354
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.64 E-value=0.11 Score=50.51 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=23.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
.++++|++|||||.. ++-++.++.. .-..+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~-------~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRH-------KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhcc-------cCCEEEEEec
Confidence 689999999999986 3444544422 1345666667
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.64 E-value=0.069 Score=49.68 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=27.6
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI 415 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 415 (615)
-.+.++++.|++|+|||..++.. ...++.. |..|+|+ ++..|+..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai-~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAI-ANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHH-HHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHH-HHHhccC-------CcceeEe-ecCceeccc
Confidence 36789999999999999985543 3344332 5556664 455555543
No 356
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.63 E-value=0.59 Score=48.82 Aligned_cols=146 Identities=20% Similarity=0.145 Sum_probs=64.8
Q ss_pred EEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH---HHHHHHHhhhh-cCcEEEEEEcCCChhHH
Q psy12410 367 IGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ---IGKEAKKFTKS-LGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 367 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q---~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 442 (615)
++.++.|+|||.+.++.++.+++..+ ....++++..+..|... ....+..+... +.+..........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI---- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE----
Confidence 56789999999998888888876542 13455555344445444 23334444443 1222221111110
Q ss_pred HHHHhcCCcEEEEChHHH--HHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC--C
Q psy12410 443 ISELKRGAEIIVCTPGRM--IDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF--P 518 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l--~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~--~ 518 (615)
.+.+|..|.+.+-..- ..-+. =..+.+|||||+-.+.+..+...+...+.... ....+++|.|+ .
T Consensus 72 --~~~nG~~i~~~~~~~~~~~~~~~--------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~ 140 (384)
T PF03237_consen 72 --ILPNGSRIQFRGADSPDSGDNIR--------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPG 140 (384)
T ss_dssp --EETTS-EEEEES-----SHHHHH--------TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SS
T ss_pred --EecCceEEEEecccccccccccc--------ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCC
Confidence 0145666777663321 11111 13577999999887654333333333333222 22222445443 3
Q ss_pred hHHHHHHHHHcCCC
Q psy12410 519 RQMEALARRILNKP 532 (615)
Q Consensus 519 ~~~~~~~~~~~~~p 532 (615)
..+..+......+.
T Consensus 141 ~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 141 GWFYEIFQRNLDDD 154 (384)
T ss_dssp SHHHHHHHHHHCTS
T ss_pred CceeeeeehhhcCC
Confidence 44555666555544
No 357
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.2 Score=55.73 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=59.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
.+|++||.|+|||.++.+.+ ..++.... ...| -+.-++...|.. -..|..+..+...++..+.|....
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA-k~L~c~~~---~~~~--~~~~~~~~~Cg~-C~sC~~~~~g~~~n~~~~d~~s~~----- 107 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA-KAVNCQRM---IDDP--VYLQEVTEPCGE-CESCRDFDAGTSLNISEFDAASNN----- 107 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH-HHhCCCCc---CCcc--ccccccCCCCcc-CHHHHHHhccCCCCeEEecccccC-----
Confidence 37899999999999865433 33433210 0000 011111111221 133555555555566655543211
Q ss_pred HHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 445 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 445 ~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
..+.+..++..-.. ...+....+|||||||.|-... ...+.+.+..-++..-+| |.+|
T Consensus 108 -----------~vd~Ir~l~e~~~~-~P~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~I-L~t~ 165 (620)
T PRK14954 108 -----------SVDDIRQLRENVRY-GPQKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFI-FATT 165 (620)
T ss_pred -----------CHHHHHHHHHHHHh-hhhcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 11223232221100 0234667899999999876322 334444455444443333 4334
No 358
>PHA00729 NTP-binding motif containing protein
Probab=94.57 E-value=0.27 Score=47.26 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=40.9
Q ss_pred CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-cH----HHHHHHHHhcCCCCcEEEEeccCChHHHHH
Q psy12410 450 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-FE----PQVMRIIDNVRPDRQTVMFSATFPRQMEAL 524 (615)
Q Consensus 450 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-~~----~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~ 524 (615)
...++.+...|...+.... .....+++||||++-.-+... +. ..+..+...++..++++.|...-+..+...
T Consensus 59 ~~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~ 135 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFY 135 (226)
T ss_pred CcEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHH
Confidence 3455556666666554311 112346789999954222111 01 222334444444566777777766676666
Q ss_pred HHHHc
Q psy12410 525 ARRIL 529 (615)
Q Consensus 525 ~~~~~ 529 (615)
++.-.
T Consensus 136 Lr~Rg 140 (226)
T PHA00729 136 LREKG 140 (226)
T ss_pred HHhCC
Confidence 66533
No 359
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.23 Score=51.20 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEccCCCchhHHhHHHHHHHHhcC
Q psy12410 349 PTPIQAQAIPAIMS--G---RDLIGIAKTGSGKTVAFVLPLLRHILDQ 391 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~--~---~~~i~~a~TGsGKT~~~~l~~l~~~~~~ 391 (615)
++|||...|..+.. + .-+++.||.|.||+..+.. +...++..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcCC
Confidence 46888888877763 3 2568999999999987643 33445443
No 360
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.52 E-value=0.23 Score=53.47 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCHHH-HHHHHHCCCCCCC----HHHHHHHHHHH--cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 332 GVSKKI-LDALKKQNYEKPT----PIQAQAIPAIM--SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 332 ~l~~~l-~~~l~~~~~~~~~----~~Q~~~i~~i~--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
++..++ ...|.++--.++. .+|.+==.+|- .+.-+|++|..|||||.+++--+...+...+.. ..+..|||
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~--l~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP--LQAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc--cccCceEE
Confidence 344444 4455554333332 22333333333 345689999999999999655444444443321 22333999
Q ss_pred EcCcHHHHHHHHHHHHHh
Q psy12410 405 MSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~ 422 (615)
+.|.+.+..-+...+-.+
T Consensus 266 l~PN~vFleYis~VLPeL 283 (747)
T COG3973 266 LGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EcCcHHHHHHHHHhchhh
Confidence 999999877655555444
No 361
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.52 E-value=0.23 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=18.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.++++.||+|+|||.+. ..++.++
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999873 3344444
No 362
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.51 E-value=0.39 Score=53.66 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
+....+|||||+|.|... ....+.+.+...++.. +++|.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCe-EEEEEeC
Confidence 456789999999977532 2334444454444333 4444444
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.46 E-value=0.73 Score=44.94 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|.-+++.|++|+|||...+..++..+ .++.+++|+.=- +-..++...+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~--------~~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL--------KQGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH--------hCCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 45678889999999987655555444 235567776643 3334555555554
No 364
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.43 E-value=0.15 Score=53.84 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=29.8
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|.+++-.....+.|... .+..|.-++... +...+.+++.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 344677776555544444322 122222222111 113477999999999999874
No 365
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.39 E-value=0.29 Score=51.15 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|.-+++.|++|+|||...+..+.... ..+.+++|+.-. +...|+...+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a--------~~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA--------KRGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--------hcCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45678899999999997554443332 124568887653 3345655544444
No 366
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.37 E-value=0.31 Score=48.43 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
|.-+++.|++|+|||...+-.+.+.+ .++.+++|+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a--------~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA--------SRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--------hCCCcEEEEE
Confidence 45678999999999997554444443 2355677777
No 367
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.087 Score=55.49 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChH
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~ 520 (615)
.....++||||||+|... ....+.+++..-++.. ++++.||-+..
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 356789999999998632 2345566665544444 45555554433
No 368
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.32 E-value=0.75 Score=47.96 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=75.1
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc-Cc-HHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS-PT-RELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~-Pt-r~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
++++|=-|||||++..-.+.+. .+ .+.++++++ .| |..|..+ ++.++...++.+.....+. ..-.+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~l-kk-------~~~kvllVaaD~~RpAA~eQ---L~~La~q~~v~~f~~~~~~-~Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYL-KK-------KGKKVLLVAADTYRPAAIEQ---LKQLAEQVGVPFFGSGTEK-DPVEI 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHH-HH-------cCCceEEEecccCChHHHHH---HHHHHHHcCCceecCCCCC-CHHHH
Confidence 6777889999999865544433 22 244455554 33 4444443 6677776676655441111 11111
Q ss_pred HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCChHHH
Q psy12410 444 SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 522 (615)
Q Consensus 444 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~ 522 (615)
....+.. .....+++||||=|-|+- +......+..|-..++|+--++++=|+...+..
T Consensus 171 ----------------ak~al~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 171 ----------------AKAALEK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred ----------------HHHHHHH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 0112221 223456788888887653 444567777777778887767777787776666
Q ss_pred HHHHHH
Q psy12410 523 ALARRI 528 (615)
Q Consensus 523 ~~~~~~ 528 (615)
..+..|
T Consensus 230 ~~A~aF 235 (451)
T COG0541 230 NTAKAF 235 (451)
T ss_pred HHHHHH
Confidence 666555
No 369
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.32 Score=49.88 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHc--CC---CEEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 349 PTPIQAQAIPAIMS--GR---DLIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~--~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
++|+|...|..+.. ++ -+|+.||.|.|||..+...+ ..++.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a-~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA-QALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH-HHHcC
Confidence 36888888888763 32 47899999999998855433 34443
No 370
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.26 E-value=0.22 Score=53.97 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q psy12410 363 GRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~ 379 (615)
.+.+|+.||+|+|||++
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999986
No 371
>KOG2543|consensus
Probab=94.24 E-value=0.29 Score=49.96 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCccEEEEccccccccCC--cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcc
Q psy12410 475 RRVTYIVLDEADRMFDMG--FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRS 541 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 541 (615)
...-+||+|-|+.+-|++ ..+.+..+-..++.+.-.|+||+++.+.. -+.+.....++.+.++...
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~-y~~n~g~~~i~~l~fP~Ys 181 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ-YLINTGTLEIVVLHFPQYS 181 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH-hhcccCCCCceEEecCCCC
Confidence 456689999999988877 44555555555555555788899988752 2233344566766666443
No 372
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.3 Score=50.99 Aligned_cols=135 Identities=11% Similarity=0.153 Sum_probs=62.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCC---CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET---DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
-+|+.||.|.||+..+. .+...++........ ..+..+.+++.-..|.+ +.....-.+..+.-......
T Consensus 43 A~Lf~Gp~G~GK~~lA~-~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~-------i~~~~HPDl~~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATLAY-RMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR-------IAAGAHGGLLTLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhCCCCCCCCccccccccccCCCCChHHHH-------HHccCCCCeEEEeccccccc
Confidence 47899999999998744 344555554311111 11233444554333333 22222112222221100000
Q ss_pred HHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
. .....|. .+.+..+...-.. ........+|||||||.|- ..-...+.+++...++...+|++|..
T Consensus 115 --~--~~~~~I~---VdqiR~l~~~~~~-~~~~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 115 --K--RLRTVIT---VDEVRELISFFGL-TAAEGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred --c--ccccccc---HHHHHHHHHHhCc-CcccCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 0 0012343 3334333332111 1224567899999999875 22345566666665545555555544
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.14 E-value=0.22 Score=49.50 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC---cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP---TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P---tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
.=+++.|+||.|||..++-.+++.+... +..|+|+.. ..+++..+...+. ++...-+..+.-..
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~s------~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARLS------GVPYNKIRSGDLSD 86 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHHH------TSTHHHHHCCGCHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhh------cchhhhhhccccCH
Confidence 3467789999999998766666665432 466888874 3444444322221 22111111122222
Q ss_pred HHHH-------HHhcCCcEE-EEC----hHHHHHHHHhcCCCcccCCCccEEEEccccccccC----CcHHHHHHHHHhc
Q psy12410 441 EQIS-------ELKRGAEII-VCT----PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM----GFEPQVMRIIDNV 504 (615)
Q Consensus 441 ~~~~-------~l~~~~~Ii-v~T----p~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~----~~~~~~~~i~~~~ 504 (615)
..+. .+.. ..++ ..+ +..|...+.... .....+.+||||-+|.|-.. +....+..+...+
T Consensus 87 ~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~---~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~L 162 (259)
T PF03796_consen 87 EEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLK---REGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISREL 162 (259)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHH---HHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHH---hhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 2222 2222 3344 343 445555444321 12267889999999987653 2344444443333
Q ss_pred C-----CCCcEEEEecc
Q psy12410 505 R-----PDRQTVMFSAT 516 (615)
Q Consensus 505 ~-----~~~q~l~~SAT 516 (615)
. .++.+|++|..
T Consensus 163 k~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 163 KALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHTSEEEEEEEB
T ss_pred HHHHHHcCCeEEEcccc
Confidence 1 24555555543
No 374
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=0.32 Score=49.55 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHH----cCC---CEEEEccCCCchhHHhHHHHHHHHhcC
Q psy12410 348 KPTPIQAQAIPAIM----SGR---DLIGIAKTGSGKTVAFVLPLLRHILDQ 391 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~~ 391 (615)
.++|+|...+..+. .++ -+++.||.|.||+..+.. +...++..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcCC
Confidence 45677777776654 443 578999999999976543 33444443
No 375
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.13 E-value=0.2 Score=57.71 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=31.3
Q ss_pred CccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 323 RPIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
.|...|.+++....+.+.|... .+..+.-++... +...+.+++.||+|+|||+.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788887766666665432 111111111100 112356899999999999874
No 376
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.12 E-value=0.75 Score=53.89 Aligned_cols=80 Identities=16% Similarity=0.342 Sum_probs=62.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.+++|++|+.+-+..+++.+..+.. ++++.+++|+++..+.. ..+..| .+|+||| +++..+ .+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~iie~G----ID 727 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TIIETG----ID 727 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhcc----cc
Confidence 367899999999988888888887654 57899999998765543 233344 8999999 456655 78
Q ss_pred CCCccEEEEcccccc
Q psy12410 474 LRRVTYIVLDEADRM 488 (615)
Q Consensus 474 l~~~~~lVvDEah~~ 488 (615)
+.++++||+..|+++
T Consensus 728 Ip~v~~VIi~~a~~~ 742 (926)
T TIGR00580 728 IPNANTIIIERADKF 742 (926)
T ss_pred cccCCEEEEecCCCC
Confidence 899999999999864
No 377
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=94.12 E-value=0.068 Score=58.88 Aligned_cols=13 Identities=8% Similarity=-0.174 Sum_probs=5.6
Q ss_pred EEEEChHHHHHHH
Q psy12410 452 IIVCTPGRMIDML 464 (615)
Q Consensus 452 Iiv~Tp~~l~~~l 464 (615)
|-+.++......+
T Consensus 342 v~f~~~~~a~~A~ 354 (509)
T TIGR01642 342 CEYKDPSVTDVAI 354 (509)
T ss_pred EEECCHHHHHHHH
Confidence 3344444444433
No 378
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.05 E-value=0.5 Score=54.09 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.9
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
..++|++||+|+|||.++-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999998543
No 379
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.03 E-value=0.17 Score=55.14 Aligned_cols=40 Identities=8% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
+....+|||||||.|-. .-...+.+++...++...+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEE
Confidence 46678999999998763 23455666666655566555544
No 380
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.00 E-value=0.31 Score=50.22 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 349 PTPIQAQAIPAIM----SGR---DLIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 349 ~~~~Q~~~i~~i~----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
++|||...|..+. +|+ -+|+.||.|.||+..+.. +..+++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 5677777776654 443 568999999999987543 3444544
No 381
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.92 E-value=0.64 Score=55.78 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.+++|++|+.+-+..+++.+.++.. ++.+.+++|+.+..+.. ..+.+| .+|+||| +++..+ .++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG----IDI 877 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG----IDI 877 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc----ccc
Confidence 56899999999988888888887654 46888999998766543 333333 8999999 566655 788
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
.++++||++.|+++. .+++..+....
T Consensus 878 P~v~~VIi~~ad~fg----laq~~Qr~GRv 903 (1147)
T PRK10689 878 PTANTIIIERADHFG----LAQLHQLRGRV 903 (1147)
T ss_pred ccCCEEEEecCCCCC----HHHHHHHhhcc
Confidence 999999999998643 34455554443
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.91 E-value=0.2 Score=56.18 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=35.8
Q ss_pred cEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 478 TYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 478 ~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
-|+|+|.-|++-+...-..+..++.+.+++..+|+.|=+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999888777889999999999999999886654
No 383
>PRK06904 replicative DNA helicase; Validated
Probab=93.87 E-value=0.87 Score=49.31 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=65.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-Ec-CCChh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YG-GTGIS 440 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g-~~~~~ 440 (615)
|.=+|+.|.+|.|||..++-.+.+.... .+..|+|+.. .--..|+...+-... .++....+ .| ..+..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~-------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMA-------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhccCCCCCHH
Confidence 3446777999999999654444433322 2444666643 233344433333221 12222222 22 12221
Q ss_pred HH------HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC----cHHHHHHHHHhc-
Q psy12410 441 EQ------ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG----FEPQVMRIIDNV- 504 (615)
Q Consensus 441 ~~------~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~----~~~~~~~i~~~~- 504 (615)
+. ...+.....+.|. |+..+...+.... .....+++||||-.+.|-..+ ....+..|...+
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 367 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY---RENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLK 367 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 11 1223223446662 4555544443210 112358899999999775322 223344443333
Q ss_pred --C--CCCcEEEEe
Q psy12410 505 --R--PDRQTVMFS 514 (615)
Q Consensus 505 --~--~~~q~l~~S 514 (615)
. .++.+|++|
T Consensus 368 ~lAkel~ipVi~ls 381 (472)
T PRK06904 368 ALAKELKVPVVALS 381 (472)
T ss_pred HHHHHhCCeEEEEE
Confidence 1 256666666
No 384
>KOG0733|consensus
Probab=93.86 E-value=0.27 Score=52.99 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=36.7
Q ss_pred cCCCCCCccccccccCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q psy12410 317 KGKGCPRPIKTWAQCGVSKKILDALKKQ--NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 317 ~~~~~p~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~ 379 (615)
.+...|.+-.+|.++|-....+..|..+ .+..|..++.-.+. --+.+|+.||.|+|||..
T Consensus 178 ~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 178 EGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred cccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHH
Confidence 3444555566899987444433333221 25566666544321 237899999999999976
No 385
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.75 Score=50.92 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=24.4
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
.....++||||+|.|-.. ....+.+.+...+ ..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp-~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS-AFNALLKTIEEPP-PYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHH-HHHHHHHhhccCC-CCEEEEEecCCh
Confidence 467789999999987532 2334444444433 333444544533
No 386
>PRK07413 hypothetical protein; Validated
Probab=93.85 E-value=0.14 Score=52.92 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=95.8
Q ss_pred CCHHHHHHHHhhhc---CeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCc
Q psy12410 299 MTPEEVEKYKEELE---GIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSG 375 (615)
Q Consensus 299 ~~~~~~~~~r~~~~---~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsG 375 (615)
++.+++..+...-+ .+-++|...|..+....++----..++.-...|..-|+ -.+|. +.+.-..|-|
T Consensus 143 l~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~---------~~~g~-i~VYTG~GKG 212 (382)
T PRK07413 143 LPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHRRPTASELGVPF---------NSSGG-IEIYTGEGKG 212 (382)
T ss_pred ccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeEEeceecCCCcCCCCccc---------CCCCe-EEEEeCCCCC
Confidence 56667666654332 36678888888777666641000000000111221121 11233 4555568999
Q ss_pred hhHHhHHHHHHHHhcCCCCCCCCCC------eEEEEcCcHHHHH-HHHHHHHHhhhhcCcEEEEEEcCCCh--hHHHHHH
Q psy12410 376 KTVAFVLPLLRHILDQPPLEETDGP------MAIIMSPTRELCM-QIGKEAKKFTKSLGLRVVCVYGGTGI--SEQISEL 446 (615)
Q Consensus 376 KT~~~~l~~l~~~~~~~~~~~~~~~------~~lil~Ptr~La~-q~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l 446 (615)
||.+++-.++..+ +.|. +|+|+.=.+.-.. -=...+..+...++-.+.....|... +..
T Consensus 213 KTTAAlGlAlRA~--------G~G~~~~~~~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~~~~~~~---- 280 (382)
T PRK07413 213 KSTSALGKALQAI--------GRGISQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRG---- 280 (382)
T ss_pred chHHHHHHHHHHh--------cCCCCcccCceEEEEEECCCCCChHHHHHHHHhhhhCCCcEEEEEccCCCceeec----
Confidence 9999888888776 4554 7888764332100 00111222211011002121112110 000
Q ss_pred hcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcH--HHHHHHHHhcCCCCcEEEEecc-CChHHHH
Q psy12410 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFE--PQVMRIIDNVRPDRQTVMFSAT-FPRQMEA 523 (615)
Q Consensus 447 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~--~~~~~i~~~~~~~~q~l~~SAT-~~~~~~~ 523 (615)
.....-............. ...-..+++||+||+-..++.++. ..+..++...++..-+|++--. .|+.+-+
T Consensus 281 -~~~~~~~~~a~~~~~~a~~----~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie 355 (382)
T PRK07413 281 -QQQPIDYVEAERAWEIARA----AIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFD 355 (382)
T ss_pred -CChHHHHHHHHHHHHHHHH----HHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 0000000000111122211 122356889999999988888754 4777888876666555544444 6676665
Q ss_pred HHH
Q psy12410 524 LAR 526 (615)
Q Consensus 524 ~~~ 526 (615)
++.
T Consensus 356 ~AD 358 (382)
T PRK07413 356 LAS 358 (382)
T ss_pred hCc
Confidence 554
No 387
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.37 Score=53.13 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
....++||||||.|-. +-...+.+++...++.. +++|.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~-~A~NaLLKtLEEPp~~t-vfIL~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLST-SAWNALLKTLEEPPKHV-VFIFATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCH-HHHHHHHHHHHhCCCcE-EEEEECCChH
Confidence 4567899999997742 22344555555544443 3444445443
No 388
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.76 E-value=0.076 Score=49.44 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCC-CCcEEEEecc
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP-DRQTVMFSAT 516 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-~~q~l~~SAT 516 (615)
..-.++|+||....++......+..++..+.. +.++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45689999999998887777777777665533 3555555543
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.75 E-value=0.6 Score=45.34 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=30.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 421 (615)
.|..+++.|++|+|||..++..+.+.+ . .+..++|+.- .+.+.++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~-------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R-------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h-------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 356789999999999987554444443 2 2445666653 3333454444443
No 390
>PF05729 NACHT: NACHT domain
Probab=93.75 E-value=1.7 Score=39.33 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
-+++.|+.|+|||.... .++..+.
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHH
Confidence 37899999999999754 3333433
No 391
>KOG0738|consensus
Probab=93.72 E-value=0.3 Score=49.84 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=35.7
Q ss_pred CccEEEEccccccccC-C----------cHHHHHHHHHhc----CCCCcEEEEeccC-ChHHHHHHHHHcCCCEEEEECC
Q psy12410 476 RVTYIVLDEADRMFDM-G----------FEPQVMRIIDNV----RPDRQTVMFSATF-PRQMEALARRILNKPIEIQVGG 539 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~-~----------~~~~~~~i~~~~----~~~~q~l~~SAT~-~~~~~~~~~~~~~~p~~i~~~~ 539 (615)
--+.|.|||+|.|... | +-..+.-.+.-+ ....-++++.||. |=++.+.++.-|-..|.|..+.
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 3457999999987632 1 111111111111 2223466678884 4456666777777766666554
Q ss_pred c
Q psy12410 540 R 540 (615)
Q Consensus 540 ~ 540 (615)
.
T Consensus 384 ~ 384 (491)
T KOG0738|consen 384 A 384 (491)
T ss_pred H
Confidence 3
No 392
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.64 E-value=0.32 Score=45.67 Aligned_cols=41 Identities=10% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
.....+|||||+|.|-.. ....+...+...++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 466789999999988632 2344555555533333 4444444
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.56 E-value=0.65 Score=55.12 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=33.1
Q ss_pred cEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 478 TYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 478 ~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
-+||||++|.+-+......+..++...++...+|+.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 489999999876555566788888888888888888877543
No 394
>KOG1133|consensus
Probab=93.54 E-value=0.12 Score=56.30 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.+|+.||.+.+..+. .|+-.|+..|||+|||+..+-.++.++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 489999998887654 788889999999999996554555444
No 395
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.53 E-value=0.58 Score=45.39 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=33.1
Q ss_pred CccccccccCCCHHHHHH-HHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12410 323 RPIKTWAQCGVSKKILDA-LKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRH 387 (615)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~ 387 (615)
..|..|.+|+|++.+.+. +.+.|+ +|++|+|||||+... ..++.|
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhhH-HHHhcc
Confidence 456689999999888764 445566 899999999999872 334444
No 396
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.53 E-value=0.22 Score=57.31 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.++.+++.||+|+|||+.+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3578999999999999763
No 397
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.47 E-value=0.12 Score=53.37 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 358 PAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 358 ~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
.++..+.+++++|+||||||... -.++.++ ....+++.|=.+.+|.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll-~aLl~~i--------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMS-KTLISAI--------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHH-HHHHccc--------CCCCCEEEECCCcccc
Confidence 33457889999999999999872 2233333 2234577777887764
No 398
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=93.43 E-value=0.11 Score=57.25 Aligned_cols=15 Identities=7% Similarity=-0.155 Sum_probs=7.2
Q ss_pred eEEEEcCcHHHHHHH
Q psy12410 401 MAIIMSPTRELCMQI 415 (615)
Q Consensus 401 ~~lil~Ptr~La~q~ 415 (615)
.+.|-..+.+.|...
T Consensus 339 ~afv~f~~~~~a~~A 353 (509)
T TIGR01642 339 YAFCEYKDPSVTDVA 353 (509)
T ss_pred EEEEEECCHHHHHHH
Confidence 344445554544444
No 399
>PRK04328 hypothetical protein; Provisional
Probab=93.42 E-value=0.67 Score=45.69 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|..+++.|++|+|||...+-.+...+ ..|..++|+. +.+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~--------~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--------hcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 56688999999999987554455444 2355567766 444455565555555
No 400
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=0.56 Score=52.53 Aligned_cols=44 Identities=7% Similarity=0.148 Sum_probs=27.1
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
.+....+|||||||.|.. .....+.+++...+... +++|.+|-.
T Consensus 118 ~~~~~KVvIIdea~~Ls~-~a~naLLK~LEepp~~t-ifIL~tt~~ 161 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQ-AAFNAFLKTLEEPPSYA-IFILATTEK 161 (614)
T ss_pred ccCCcEEEEEECcccCCH-HHHHHHHHHHhCCCCCe-EEEEEeCCc
Confidence 356788999999998853 22445556666544433 445555543
No 401
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.38 E-value=0.83 Score=52.93 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.+..++++||+|+|||.++
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999874
No 402
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.34 E-value=0.85 Score=49.08 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 441 (615)
|.-+++.|++|+|||...+-.+.+.+.. .+..|+|+.. ..-..|+...+..... ++....+ .|.....+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-------~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-------EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHH
Confidence 4457888999999998755444443322 2445666653 2223444333333222 2222212 22222211
Q ss_pred H------HHHHhcCCcEEE-E----ChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC----cHHHHHHHHHhcC-
Q psy12410 442 Q------ISELKRGAEIIV-C----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG----FEPQVMRIIDNVR- 505 (615)
Q Consensus 442 ~------~~~l~~~~~Iiv-~----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~----~~~~~~~i~~~~~- 505 (615)
. ...+.. ..+.| . |+..+...+... ..-..+++||||=.+.|...+ ....+..|...+.
T Consensus 265 ~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~----~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~ 339 (434)
T TIGR00665 265 WEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRL----KREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKA 339 (434)
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHH----HHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 1 122222 34554 2 444555444321 111347899999998774222 2233444433332
Q ss_pred ----CCCcEEEEec
Q psy12410 506 ----PDRQTVMFSA 515 (615)
Q Consensus 506 ----~~~q~l~~SA 515 (615)
.++.+|++|-
T Consensus 340 lA~e~~i~vi~lsq 353 (434)
T TIGR00665 340 LAKELNVPVIALSQ 353 (434)
T ss_pred HHHHhCCeEEEEec
Confidence 3555665553
No 403
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=93.31 E-value=0.057 Score=58.59 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=8.1
Q ss_pred EEEeCCcchHHHHHHHhh
Q psy12410 577 IVFVDKQENADSLLFHSM 594 (615)
Q Consensus 577 LIF~~s~~~a~~l~~~L~ 594 (615)
.|-..+...|......|.
T Consensus 414 fV~F~~~e~A~~A~~~ln 431 (457)
T TIGR01622 414 YLKFSSVDAALAAFQALN 431 (457)
T ss_pred EEEECCHHHHHHHHHHhc
Confidence 333444444444444444
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.29 E-value=1.2 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
..|+|++||+|+|||.+.-..+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998544333
No 405
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.28 E-value=1 Score=45.99 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=24.7
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+|||||+|.+... ....+..++....+...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 3568999999987532 2445666666666666555544
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.26 E-value=0.26 Score=50.71 Aligned_cols=45 Identities=29% Similarity=0.323 Sum_probs=30.2
Q ss_pred HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
++..+.+++++|+||||||... -.++.++ ...-++++|=-+.+|.
T Consensus 156 ~v~~~~nili~G~tgSGKTTll-~aL~~~i--------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFT-NAALREI--------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHH-HHHHhhC--------CCCCeEEEecCCCccc
Confidence 3447889999999999999872 3344444 2244566665666654
No 407
>PRK07004 replicative DNA helicase; Provisional
Probab=93.25 E-value=0.54 Score=50.81 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc---CcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS---PTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTG 438 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~---Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~ 438 (615)
|.=+|+.|.+|+|||..++-.+.+....+ +..|+|+. +..+|+..+... . .++....+ .|...
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~-------~~~v~~fSlEM~~~ql~~R~la~---~---~~v~~~~i~~g~l~ 279 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEY-------GLPVAVFSMEMPGTQLAMRMLGS---V---GRLDQHRMRTGRLT 279 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHc-------CCeEEEEeCCCCHHHHHHHHHHh---h---cCCCHHHHhcCCCC
Confidence 44578889999999987654444443322 44455554 334444443211 1 12222211 22222
Q ss_pred hhHH------HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC----cHHHHHHHHHh
Q psy12410 439 ISEQ------ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG----FEPQVMRIIDN 503 (615)
Q Consensus 439 ~~~~------~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~----~~~~~~~i~~~ 503 (615)
..+. ...+. ...|.|. |+..+...+.... .....+.+||||=.+.|-..+ ....+..|...
T Consensus 280 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~---~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~ 355 (460)
T PRK07004 280 DEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLA---RQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRS 355 (460)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHH
Confidence 2211 12222 3556663 4444444333210 112357899999999775321 22334444443
Q ss_pred cC-----CCCcEEEEec
Q psy12410 504 VR-----PDRQTVMFSA 515 (615)
Q Consensus 504 ~~-----~~~q~l~~SA 515 (615)
+. .++.+|++|-
T Consensus 356 LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 356 LKSLAKELDVPVIALSQ 372 (460)
T ss_pred HHHHHHHhCCeEEEEec
Confidence 32 2555666653
No 408
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.23 E-value=0.2 Score=52.94 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.+++.||+|+|||+++
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999874
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.16 E-value=0.26 Score=46.27 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHh
Q psy12410 348 KPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~ 380 (615)
.+++.|...+...+ .+..++++|+||||||..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 36777777776655 6789999999999999873
No 410
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.15 E-value=0.37 Score=47.28 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=19.5
Q ss_pred ChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 456 Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
-|+-|..+| .+|..-+++.|||+|++.
T Consensus 90 K~gDlaaiL-------t~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAIL-------TNLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHH-------hcCCcCCeEEEehhhhcC
Confidence 455555555 346677899999999986
No 411
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.13 E-value=0.33 Score=49.49 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
.++++.||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999774
No 412
>KOG0333|consensus
Probab=93.13 E-value=0.4 Score=50.71 Aligned_cols=71 Identities=21% Similarity=0.379 Sum_probs=52.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhc-CCcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKR-GAEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
..|.+||.+.|..-|.-+++.+.+. |++++.++||....+.. ..+.. ..+|+||| +....+ ++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvAgRG----ID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVAGRG----ID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----cccccC----CC
Confidence 4677999999998888876666665 89999999998765543 34444 38999999 333333 67
Q ss_pred CCCccEEE
Q psy12410 474 LRRVTYIV 481 (615)
Q Consensus 474 l~~~~~lV 481 (615)
..++++||
T Consensus 583 IpnVSlVi 590 (673)
T KOG0333|consen 583 IPNVSLVI 590 (673)
T ss_pred CCccceee
Confidence 77787765
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.10 E-value=0.25 Score=51.20 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
+..++++||||||||+.. ..++.++.. ..+.+++.+-...++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINK------NAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCc------CCCCEEEEEcCChhh
Confidence 456899999999999873 334444422 123456666555444
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.07 E-value=0.56 Score=51.18 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHHHHc-----CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 355 QAIPAIMS-----GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 355 ~~i~~i~~-----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..+..++. |.-+++.+|+|+|||+..+..+.+.+ .+|-+++|+. +.+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~--------~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC--------ANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34555553 35689999999999997554444443 2366788877 566678887777766
No 415
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.06 E-value=0.23 Score=52.82 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHcCCC--EEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 350 TPIQAQAIPAIMSGRD--LIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~--~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
++.|...+..+++... +|+.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6777777777665443 57789999999997 4456666543
No 416
>PRK08506 replicative DNA helicase; Provisional
Probab=93.06 E-value=0.76 Score=49.84 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 441 (615)
|.-+|+.|+||.|||..++-.+.+.+ . .+..|+|+.. ..-+.|+...+.... .++....+ .|.....+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-~-------~g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-N-------QDKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-h-------cCCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHH
Confidence 34467789999999987665555443 2 2445666643 233444443332221 12222212 12222111
Q ss_pred H------HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 442 Q------ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 442 ~------~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
. ...+.. ..+.|. |+..+...+.... .....+.+||||=.+.|-
T Consensus 261 ~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~---~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLK---SQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEcChhhcc
Confidence 1 122222 345553 4455554443211 112358899999999775
No 417
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.02 E-value=0.66 Score=54.34 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
..++|++||+|+|||.+.-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 36899999999999988543
No 418
>PRK07413 hypothetical protein; Validated
Probab=93.01 E-value=0.95 Score=46.90 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCCccEEEEccccccccCCc--HHHHHHHHHhcCCCCcEEEEeccCChHHHHHHH
Q psy12410 474 LRRVTYIVLDEADRMFDMGF--EPQVMRIIDNVRPDRQTVMFSATFPRQMEALAR 526 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~ 526 (615)
-..+++||+||+-..++.++ ...+..++.+.++..-+|++--..|+.+.+++.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 35789999999998887774 467888888877777677776777777666554
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.94 E-value=0.45 Score=46.02 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|.-+++.|++|+|||...+-.+...+ .++..++|+.-- +...++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~--------~~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL--------KNGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--------hCCCeEEEEECC-CCHHHHHHHHHHc
Confidence 45678899999999986544444443 235567776543 3456666655554
No 420
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.85 E-value=0.54 Score=48.52 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 578999999999998744
No 421
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=1.6 Score=47.41 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
.....++||||||.|... ....+...+...++.. +++|.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCe-EEEEEEC
Confidence 456789999999977532 2344445555443343 4444444
No 422
>CHL00176 ftsH cell division protein; Validated
Probab=92.84 E-value=0.34 Score=54.32 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.+|+.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999874
No 423
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.83 E-value=1.7 Score=44.10 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI 443 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 443 (615)
+.+.+.|+.|.|||.. +-++.+.+-.. .-.-+++-.-...+++.+..+- |.
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~~---------~k~R~HFh~FM~~vH~~l~~l~-----------g~------- 116 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPGE---------RKRRLHFHRFMARVHQRLHTLQ-----------GQ------- 116 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCcc---------ccccccHHHHHHHHHHHHHHHc-----------CC-------
Confidence 6789999999999975 33443332110 1233566666777777777663 11
Q ss_pred HHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEeccCChH
Q psy12410 444 SELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQ 520 (615)
Q Consensus 444 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~ 520 (615)
.+.+ | .+..- -+.+..+|++||.+. -|-+-.--+..+++.+ ..++.+|++|.|.|..
T Consensus 117 ------~dpl---~-~iA~~---------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 117 ------TDPL---P-PIADE---------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred ------CCcc---H-HHHHH---------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 1111 0 01111 134567899999983 3333334445555544 4578888899998854
No 424
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=92.67 E-value=0.079 Score=57.47 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=11.9
Q ss_pred EecChhHHHHHHHHHHhccCCCCcEEE
Q psy12410 552 IVLDEEQKMLKLLELLGIYQDQGSVIV 578 (615)
Q Consensus 552 ~~~~~~~k~~~l~~~l~~~~~~~~~LI 578 (615)
+......-....+..|.-..-.|+.|.
T Consensus 415 V~F~~~e~A~~A~~~lnGr~f~gr~i~ 441 (457)
T TIGR01622 415 LKFSSVDAALAAFQALNGRYFGGKMIT 441 (457)
T ss_pred EEECCHHHHHHHHHHhcCcccCCeEEE
Confidence 334444444444444543334555443
No 425
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.62 E-value=0.3 Score=52.61 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=22.7
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEE
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 512 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~ 512 (615)
.....+|||||||.|-.. -...+.+++...++...+|+
T Consensus 119 ~~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred cCCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEE
Confidence 356779999999987532 23445555555444443443
No 426
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.60 E-value=0.69 Score=51.53 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=56.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.|+|+..|.++++.+... ++.+.+++|+....+.. ..+.+| ..||||| +++..+ ++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----ID 322 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LH 322 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CC
Confidence 4667999999999999987777654 78999999998765543 333333 7999999 556554 77
Q ss_pred CCCccEEEEccc
Q psy12410 474 LRRVTYIVLDEA 485 (615)
Q Consensus 474 l~~~~~lVvDEa 485 (615)
+..+.+||.-.+
T Consensus 323 ip~V~~VInyd~ 334 (572)
T PRK04537 323 IDGVKYVYNYDL 334 (572)
T ss_pred ccCCCEEEEcCC
Confidence 888998886543
No 427
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.57 E-value=0.81 Score=46.57 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHHcCCCEEEEccCCCchhHHh
Q psy12410 357 IPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 357 i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
+-.+..++++++.|++|+|||...
T Consensus 58 l~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 58 CAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHhcCCcEEEEeCCCChHHHHH
Confidence 344556889999999999999874
No 428
>KOG0741|consensus
Probab=92.49 E-value=0.29 Score=51.88 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCccccccccC---CCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 322 PRPIKTWAQCG---VSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 322 p~~~~~~~~~~---l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
-.|-..|.++| |..+.-..++.. -...|--+.+-.+++ -+.+|+.||.|+|||+++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 35556777774 666665555432 111222222222222 267899999999999974
No 429
>PRK10436 hypothetical protein; Provisional
Probab=92.46 E-value=0.23 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=17.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
--+|++||||||||... ..++.++
T Consensus 219 GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 219 GLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CeEEEECCCCCChHHHH-HHHHHhh
Confidence 34889999999999973 3455555
No 430
>PHA00012 I assembly protein
Probab=92.45 E-value=2.8 Score=42.33 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCCccEEEEccccccccCC-----cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcC
Q psy12410 474 LRRVTYIVLDEADRMFDMG-----FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILN 530 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~-----~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~ 530 (615)
...-.++||||||..++.- -...+...+.+.+...--++|-...+..+...++..+.
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~ 140 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALA 140 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhh
Confidence 3566799999999887532 12345555555554333344443444455656654443
No 431
>PRK08840 replicative DNA helicase; Provisional
Probab=92.42 E-value=1.7 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.020 Sum_probs=18.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
|.=+|+.|.+|.|||..++-.+.+..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a 242 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAA 242 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 44567789999999987654444443
No 432
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=92.37 E-value=0.3 Score=45.54 Aligned_cols=7 Identities=29% Similarity=0.188 Sum_probs=3.0
Q ss_pred HhhhHHh
Q psy12410 187 MQGVHEE 193 (615)
Q Consensus 187 ~~~~~~~ 193 (615)
|.++..+
T Consensus 132 ~MGf~gF 138 (180)
T PF08648_consen 132 MMGFGGF 138 (180)
T ss_pred hhccccc
Confidence 4444333
No 433
>PRK08006 replicative DNA helicase; Provisional
Probab=92.30 E-value=1.9 Score=46.70 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=65.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 441 (615)
|.=+|+.|.+|.|||..++-.+.+....+ +..|+|+.. .--..|+...+-... .++...-+ .|..+..+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~-------g~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQ-------DKPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 34467779999999987665555544322 344666542 122334433332221 12222222 22222222
Q ss_pred H------HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccccC----CcHHHHHHHHHhcC-
Q psy12410 442 Q------ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM----GFEPQVMRIIDNVR- 505 (615)
Q Consensus 442 ~------~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~----~~~~~~~~i~~~~~- 505 (615)
. ...+.....+.|. |+..+...+.... .....+++||||=.|.|-.. .....+..|...+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 370 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF---REHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKA 370 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHH
Confidence 1 1122223455553 4444544443210 11235889999999977421 12334444443332
Q ss_pred ----CCCcEEEEe
Q psy12410 506 ----PDRQTVMFS 514 (615)
Q Consensus 506 ----~~~q~l~~S 514 (615)
.++.+|++|
T Consensus 371 lAkel~ipVi~Ls 383 (471)
T PRK08006 371 LAKELQVPVVALS 383 (471)
T ss_pred HHHHhCCeEEEEE
Confidence 256667766
No 434
>PRK13764 ATPase; Provisional
Probab=92.23 E-value=0.33 Score=53.65 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
...+++++|+||||||... ..++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3678999999999999863 4455555
No 435
>KOG0652|consensus
Probab=92.21 E-value=1.2 Score=43.13 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.8
Q ss_pred ccEEEEccccccccCCc----------HHHHHHHHHhc---CCCCcEEEEeccC
Q psy12410 477 VTYIVLDEADRMFDMGF----------EPQVMRIIDNV---RPDRQTVMFSATF 517 (615)
Q Consensus 477 ~~~lVvDEah~~~~~~~----------~~~~~~i~~~~---~~~~q~l~~SAT~ 517 (615)
-.+|.|||.|.+...-| ...+..+++++ .++-++-++.||.
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 45789999998864322 23344555554 4556677777875
No 436
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.17 E-value=8.9 Score=36.33 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc---CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS---PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~---Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
+++.|+.|+|||+.-...++-.+ .++..+.+++ ++++...|+ ..+++.+.-
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L--------~~g~~v~yvsTe~T~refi~qm--------~sl~ydv~~---------- 84 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFL--------MNGYRVTYVSTELTVREFIKQM--------ESLSYDVSD---------- 84 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHH--------hCCceEEEEEechhHHHHHHHH--------HhcCCCchH----------
Confidence 78889999999987555454444 3355666665 344444443 222221110
Q ss_pred HHHHhcCCcEEEE-----------ChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHH---hcCCCC
Q psy12410 443 ISELKRGAEIIVC-----------TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID---NVRPDR 508 (615)
Q Consensus 443 ~~~l~~~~~Iiv~-----------Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~---~~~~~~ 508 (615)
.+..|.-.++. +-..+++.+... .....-++||||=...+....-...+..++. .+-..-
T Consensus 85 --~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~----~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~g 158 (235)
T COG2874 85 --FLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEF----IKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLG 158 (235)
T ss_pred --HHhcceeEEEEecccccccChHHHHHHHHHHHhh----HHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCC
Confidence 00111111111 122334444332 3356678999999986654432334444444 344456
Q ss_pred cEEEEeccC---ChHHHHHHHHHcCCCEEEE
Q psy12410 509 QTVMFSATF---PRQMEALARRILNKPIEIQ 536 (615)
Q Consensus 509 q~l~~SAT~---~~~~~~~~~~~~~~p~~i~ 536 (615)
++|++|+-+ +.++...++..+.-.+...
T Consensus 159 KvIilTvhp~~l~e~~~~rirs~~d~~l~L~ 189 (235)
T COG2874 159 KVIILTVHPSALDEDVLTRIRSACDVYLRLR 189 (235)
T ss_pred CEEEEEeChhhcCHHHHHHHHHhhheeEEEE
Confidence 799999764 5556666666666555444
No 437
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.17 E-value=1.4 Score=48.12 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=78.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh-cCcE-EEEEEcCCCh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS-LGLR-VVCVYGGTGI 439 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~-~~~~-~~~~~g~~~~ 439 (615)
..+-.++.-|---|||.. +.|++..++.. -.|.++.|+++-+-.++-+++++..-+.. ++-. +...
T Consensus 201 KQkaTVFLVPRRHGKTWf-~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------ 268 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWF-IIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------ 268 (668)
T ss_pred hccceEEEecccCCceeh-HHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee------
Confidence 344467777888999986 56777776653 45889999999999888877776533221 1211 1111
Q ss_pred hHHHHHHhcCCcEEEEChHHHHHH--HH-hcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC-CCCcEEEEec
Q psy12410 440 SEQISELKRGAEIIVCTPGRMIDM--LA-ANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR-PDRQTVMFSA 515 (615)
Q Consensus 440 ~~~~~~l~~~~~Iiv~Tp~~l~~~--l~-~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-~~~q~l~~SA 515 (615)
.+..|.+.-|+.=... +. .+. ....=..+.+++|||||-+. ...+..|+..+. .++++|++|.
T Consensus 269 --------k~~tI~~s~pg~Kst~~fasc~n~-NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 269 --------KDNVISIDHRGAKSTALFASCYNT-NSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred --------cCcEEEEecCCCcceeeehhhccC-ccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 1234444444321010 00 111 11223567899999999665 456666666553 4788899988
Q ss_pred cC
Q psy12410 516 TF 517 (615)
Q Consensus 516 T~ 517 (615)
|.
T Consensus 336 ~N 337 (668)
T PHA03372 336 TN 337 (668)
T ss_pred CC
Confidence 84
No 438
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.17 E-value=4 Score=46.14 Aligned_cols=118 Identities=15% Similarity=0.303 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcc
Q psy12410 397 TDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVT 472 (615)
Q Consensus 397 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~ 472 (615)
..+.++||+++|+..|..+.+.+... |+.+..++|+....+. +..+..| .+|+||| ..+..+ +
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----f 506 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----L 506 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----e
Confidence 34778999999999988877766654 7888889887654333 3344444 7899999 455554 7
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhcC--CCCcEEEEeccCChHHHHHHHH
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR--PDRQTVMFSATFPRQMEALARR 527 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~--~~~q~l~~SAT~~~~~~~~~~~ 527 (615)
++..+.+||+=+++...-......+..++.... ....++++--..+..+...+..
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 788999999888886432222334444443321 2334566655665555444443
No 439
>PRK05595 replicative DNA helicase; Provisional
Probab=92.15 E-value=0.49 Score=51.00 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.=+++.|+||.|||..++-.+.+.... .|..|+|+..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~-------~g~~vl~fSl 238 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR-------EGKSVAIFSL 238 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH-------cCCcEEEEec
Confidence 3345678999999998755444433222 2455666653
No 440
>PRK08760 replicative DNA helicase; Provisional
Probab=92.12 E-value=1.2 Score=48.36 Aligned_cols=112 Identities=15% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISE 441 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 441 (615)
|.=+|+.|++|.|||...+-.+.+.... .+..|+|... ..-..|+...+..... ++....+ .|.....+
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~-------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK-------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh-------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHH
Confidence 3446778999999998765555444322 2344666543 2223444444433321 1221111 22222211
Q ss_pred H------HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 442 Q------ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 442 ~------~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
. +..+. ...|.|. |+..+...+... ..-..+++||||=.+.|-
T Consensus 299 ~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l----~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRL----KREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEecHHhcC
Confidence 1 12222 2455554 445554444321 112358899999999774
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.06 E-value=0.42 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.|+-+.++||+|+|||.... .+.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~-~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ-KIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHH-HHHHhh
Confidence 68889999999999998633 344444
No 442
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.03 E-value=0.53 Score=45.41 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=24.6
Q ss_pred cEEEEccccccc-c----CCcHHHHHHHHHhcC-CCCcEEEEeccC
Q psy12410 478 TYIVLDEADRMF-D----MGFEPQVMRIIDNVR-PDRQTVMFSATF 517 (615)
Q Consensus 478 ~~lVvDEah~~~-~----~~~~~~~~~i~~~~~-~~~q~l~~SAT~ 517 (615)
-+|||||+|.+. . ..+...+..++.... .....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999888 2 235566666666632 233345566665
No 443
>PRK06321 replicative DNA helicase; Provisional
Probab=91.98 E-value=2.4 Score=45.86 Aligned_cols=110 Identities=10% Similarity=0.024 Sum_probs=52.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE-EcCCChhHH-
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV-YGGTGISEQ- 442 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~- 442 (615)
=+|+.|.+|.|||...+-.+.+.... .+..|+|+.. ..-..|+...+... ..++...-+ .|.....+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~-------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~ 297 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQ-------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRDFQ 297 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHHHH
Confidence 35777999999998755533333222 1334555542 22233343333221 112222222 222222111
Q ss_pred -----HHHHhcCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 443 -----ISELKRGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 443 -----~~~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
...+.. ..|.|. |...+...+... ..-..+++||||=.+.|-
T Consensus 298 ~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~----~~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 298 RIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRM----KESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEcchHHcC
Confidence 122222 456664 444554444432 112458899999999775
No 444
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.97 E-value=0.42 Score=52.35 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.+|+.||+|+|||+.+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999874
No 445
>PRK05636 replicative DNA helicase; Provisional
Probab=91.95 E-value=0.46 Score=51.78 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE---cCcHHHHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM---SPTRELCMQI 415 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil---~Ptr~La~q~ 415 (615)
.=+|+.|.||.|||...+-.+.+.... ++..|+|+ .+..+|+..+
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~-------~g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK-------HNKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEeeCCHHHHHHHH
Confidence 345778999999998755444433322 24446666 2444454444
No 446
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.94 E-value=0.13 Score=54.31 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=38.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
+++++|+||||||.++++|.+... +.-+||+=|--++........+.. |..|.++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEE
Confidence 478999999999999988876432 234788888888876665544432 4444444
No 447
>KOG0739|consensus
Probab=91.94 E-value=5.2 Score=39.69 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=72.2
Q ss_pred HHHHcCC-----CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEE
Q psy12410 358 PAIMSGR-----DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVC 432 (615)
Q Consensus 358 ~~i~~~~-----~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 432 (615)
|.++.|+ .+|+.+|.|+||+..+-..+... + -..|-+.+..|+..|.-+-.++...
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----------n-STFFSvSSSDLvSKWmGESEkLVkn------- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----------N-STFFSVSSSDLVSKWMGESEKLVKN------- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----------C-CceEEeehHHHHHHHhccHHHHHHH-------
Confidence 4555553 57999999999996533222211 2 3677777777777664444443221
Q ss_pred EEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC---cHHHHHHHHHh----c-
Q psy12410 433 VYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG---FEPQVMRIIDN----V- 504 (615)
Q Consensus 433 ~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~---~~~~~~~i~~~----~- 504 (615)
|..+... ..-++|.|||+|.++... -.....+|... +
T Consensus 217 ---------------------------LFemARe--------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq 261 (439)
T KOG0739|consen 217 ---------------------------LFEMARE--------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ 261 (439)
T ss_pred ---------------------------HHHHHHh--------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh
Confidence 1122221 224578999999776432 22333333222 2
Q ss_pred ---CCCCcEEEEeccCChH-HHHHHHHHcCCCEEEEECCc
Q psy12410 505 ---RPDRQTVMFSATFPRQ-MEALARRILNKPIEIQVGGR 540 (615)
Q Consensus 505 ---~~~~q~l~~SAT~~~~-~~~~~~~~~~~p~~i~~~~~ 540 (615)
+.+--+|++.||..|. +...++.-+...|+|..++.
T Consensus 262 GVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 262 GVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred ccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcH
Confidence 1233478899997665 44455666666666655543
No 448
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.93 E-value=1.5 Score=50.70 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|..+++.||+|+|||..+
T Consensus 348 ~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 449
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.82 E-value=0.31 Score=46.02 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=27.6
Q ss_pred CccEEEEccccccccCCcH-----HHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHH
Q psy12410 476 RVTYIVLDEADRMFDMGFE-----PQVMRIIDNVRPDRQTVMFSATFPRQMEALARRI 528 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~-----~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 528 (615)
.-.+|||||||.++..... +.+...+...+...--|+|...-+..+...++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHH
Confidence 4579999999988754322 2333555555554445555555445555555543
No 450
>PRK09165 replicative DNA helicase; Provisional
Probab=91.70 E-value=1.2 Score=48.67 Aligned_cols=119 Identities=10% Similarity=0.011 Sum_probs=56.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCC-------CCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcC
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPL-------EETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGG 436 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~-------~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 436 (615)
.=+|+.|+||+|||..++-.+++....+... ....+..|+|+.. ..-..|+...+.... .++....+..|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~--s~v~~~~i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQ--SEISSSKIRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcC
Confidence 4467789999999987655444443221100 0012556776643 333445544443322 22322222222
Q ss_pred CChhHHHHHHh------cCCcEEEE-----ChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 437 TGISEQISELK------RGAEIIVC-----TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 437 ~~~~~~~~~l~------~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
.-....+..+. ....|.|. |+..+...+... ..-..+++||||=.+.|.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l----~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL----KRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEcchHhcc
Confidence 21112221111 12345553 344554444321 112358899999999775
No 451
>KOG0737|consensus
Probab=91.65 E-value=0.55 Score=47.79 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=29.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHH----HHHcCCCEEEEccCCCchhHHhH
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIP----AIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
+|.+.|-.+.+.+.|...= ..|.|.--+- .+.--+.+++.+|.|+|||+++-
T Consensus 90 ~f~DIggLe~v~~~L~e~V---ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELV---ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred ehhhccchHHHHHHHHHHH---hhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 5777766666666654331 1111111111 11123688999999999998843
No 452
>KOG2028|consensus
Probab=91.65 E-value=0.89 Score=46.12 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.4
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
.+|+.||.|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 689999999999987543
No 453
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.65 E-value=0.59 Score=49.87 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.++++||+|+|||+++
T Consensus 217 p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999874
No 454
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.64 E-value=0.85 Score=47.54 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+|+.||.|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999998743
No 455
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=1.1 Score=50.64 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
.....++||||||.|-. +....+.+.+...++.. +++|.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~-~A~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK-SAFNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCH-HHHHHHHHHhhcCCCce-EEEEEcCCh
Confidence 46778999999997652 23444555555544344 344444543
No 456
>PRK09354 recA recombinase A; Provisional
Probab=91.60 E-value=1.4 Score=45.33 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
|+-+.+.+|+|+|||...+..+.+.. ..+..++||..-..+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~--------~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ--------KAGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEECCccchH
Confidence 45678999999999998555444443 2366788887655554
No 457
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=1.2 Score=45.61 Aligned_cols=40 Identities=8% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEec
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SA 515 (615)
.....+||||+||.|-. .-...+.+++..-+ ...+|++|.
T Consensus 122 ~~~~kVvII~~ae~m~~-~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNE-AAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCH-HHHHHHHHHHhCCC-CCeEEEEEC
Confidence 46788999999998853 23556666666654 554444443
No 458
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.58 E-value=0.37 Score=49.14 Aligned_cols=57 Identities=30% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCCCHHHHH-HHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 347 EKPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 347 ~~~~~~Q~~-~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
..+++.|.. +|-++..+++++++|+||||||.. +.+++.++ ...-+++.+=-|.++.
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I--------p~~~rivtIEdt~E~~ 183 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI--------PPEERIVTIEDTPELK 183 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC--------CchhcEEEEecccccc
Confidence 345666544 455566889999999999999987 44555554 2344577776766653
No 459
>KOG0741|consensus
Probab=91.57 E-value=1.7 Score=46.41 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=41.9
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHH----HH---c-C----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 331 CGVSKKILDALKKQNYEKPTPIQAQAIPA----IM---S-G----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 331 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~----i~---~-~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
+|.+++.++.+...|+..-.+.=.+++.. +. . . ..+++.||.|||||..+.-.++. ..
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------SD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------cC
Confidence 46677777776666655444433333322 11 1 1 36799999999999875443332 34
Q ss_pred CCeEEEEcCc
Q psy12410 399 GPMAIIMSPT 408 (615)
Q Consensus 399 ~~~~lil~Pt 408 (615)
-|.|=|+.|.
T Consensus 564 FPFvKiiSpe 573 (744)
T KOG0741|consen 564 FPFVKIISPE 573 (744)
T ss_pred CCeEEEeChH
Confidence 7888888884
No 460
>KOG2036|consensus
Probab=91.56 E-value=0.98 Score=49.40 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHc-------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 350 TPIQAQAIPAIMS-------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 350 ~~~Q~~~i~~i~~-------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|--|..|+-.++. .--+-+.|.-|-||+.+..+.+...+.. ..-.+.|..|.-+-..-+++.+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~-------GysnIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF-------GYSNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc-------CcceEEEcCCChHHHHHHHHHHHcc
Confidence 4557666644431 1245667889999999988877777632 2345777788877665555544443
Q ss_pred hhhcCcEEEE----EEcCCChhHHHHHHhcCCcEEEEC-hHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHH
Q psy12410 423 TKSLGLRVVC----VYGGTGISEQISELKRGAEIIVCT-PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQV 497 (615)
Q Consensus 423 ~~~~~~~~~~----~~g~~~~~~~~~~l~~~~~Iiv~T-p~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~ 497 (615)
+..+++.-.+ +.+..+... ..+ ..|=|.- .-..+.++. ......|...++||||||-.+. .+.+
T Consensus 328 fDaL~Yqeh~Dy~iI~s~np~fk--kai---vRInifr~hrQtIQYi~--P~D~~kl~q~eLlVIDEAAAIP----Lplv 396 (1011)
T KOG2036|consen 328 FDALEYQEHVDYDIIQSTNPDFK--KAI---VRINIFREHRQTIQYIS--PHDHQKLGQAELLVIDEAAAIP----LPLV 396 (1011)
T ss_pred hhhhcchhhcchhhhhhcChhhh--hhE---EEEEEeccccceeEeec--cchhhhccCCcEEEechhhcCC----HHHH
Confidence 3333222111 111110000 000 0111110 000011111 0011337788999999999887 7888
Q ss_pred HHHHHhcCCCCcEEEEeccCC
Q psy12410 498 MRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 498 ~~i~~~~~~~~q~l~~SAT~~ 518 (615)
++++. .-+|+|+.|+.
T Consensus 397 k~Lig-----PylVfmaSTin 412 (1011)
T KOG2036|consen 397 KKLIG-----PYLVFMASTIN 412 (1011)
T ss_pred HHhhc-----ceeEEEeeccc
Confidence 88773 34788999975
No 461
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.54 E-value=0.44 Score=50.49 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
...++++.||||+|||+++-
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 34679999999999998754
No 462
>KOG0991|consensus
Probab=91.53 E-value=0.68 Score=44.06 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
.++|+.||.|+|||.+.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 579999999999999843
No 463
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.53 E-value=0.21 Score=54.33 Aligned_cols=56 Identities=34% Similarity=0.455 Sum_probs=39.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
.+++++||||||||..+++|.+.. . ..-+||+=|--+|+..+...+++. |..|.++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~----G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKR----GYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHC----CCEEEEe
Confidence 469999999999999999987633 1 124778888888877665555443 4455554
No 464
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.52 E-value=1.5 Score=51.42 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
.++|++||+|+|||.+...
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999998543
No 465
>KOG2227|consensus
Probab=91.52 E-value=0.41 Score=50.15 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH-HHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR-ELCMQI 415 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr-~La~q~ 415 (615)
+..+.++|.+|+|||.+.. -++.++-.. ..++.+++|-=|. ..+..+
T Consensus 175 ~gSlYVsG~PGtgkt~~l~-rvl~~~~~~-----~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLS-RVLDSLSKS-----SKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CcceEeeCCCCcchHHHHH-HHHHhhhhh-----cccceeEEEeeccccchHHH
Confidence 4678999999999998832 233333221 2345555555442 445555
No 466
>KOG0344|consensus
Probab=91.47 E-value=4.3 Score=43.85 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhc
Q psy12410 372 TGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKR 448 (615)
Q Consensus 372 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~ 448 (615)
.+.|++..-++++.+.+.. +-.|-+||.+-+.+-|.|++..+. ...++++.+++|..+.... ...+..
T Consensus 366 vF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred eeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhc
Confidence 4677887766666666533 346778888888999999988776 2347899999998654433 333344
Q ss_pred C-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 449 G-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 449 ~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
| ..|+||| ++|.++ .+|.++.+||-+..-
T Consensus 437 g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 437 GKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred cCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 4 7899999 677766 789999999997654
No 467
>PF12846 AAA_10: AAA-like domain
Probab=91.43 E-value=0.53 Score=47.53 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCM 413 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 413 (615)
+.+++++|+||+|||.... .++..++. .++.++|+=|.-+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999998866 44444433 3677888877655443
No 468
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.35 E-value=0.08 Score=48.73 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=18.0
Q ss_pred CCccEEEEccccccc--cCCcHHHHHHHHH
Q psy12410 475 RRVTYIVLDEADRMF--DMGFEPQVMRIID 502 (615)
Q Consensus 475 ~~~~~lVvDEah~~~--~~~~~~~~~~i~~ 502 (615)
...++|||||+=.|- ..+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 577899999999774 3447777777776
No 469
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.34 E-value=0.71 Score=47.02 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
|.-+.+.+|+|+|||...+..+.... . .+..++|+-.-..+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~-~-------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALD 96 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEcccchhH
Confidence 45678999999999998554444332 2 255677775544443
No 470
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.32 E-value=9.6 Score=36.94 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcC--CCEEEEECCcccccCCeEEEE
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILN--KPIEIQVGGRSVVCKEVEQHV 551 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~--~p~~i~~~~~~~~~~~i~~~~ 551 (615)
+..-++||+||-=.-+|.-+...+...+-.++..--+|+||.-.-..++.||...|- .--.|..+.........-...
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~ 225 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKR 225 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCce
Confidence 345679999999877777677888888888887788999999888888888887662 111222222211111010111
Q ss_pred EecChhHHHHHHHH---HHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCC
Q psy12410 552 IVLDEEQKMLKLLE---LLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCL 598 (615)
Q Consensus 552 ~~~~~~~k~~~l~~---~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~ 598 (615)
+++....-...|.. ++... ...|-..|-...-..|..|...+...||
T Consensus 226 ~~ies~~s~eeL~~ipgi~~~~~~~~G~~~i~ie~e~~a~~ifq~~a~~g~ 276 (300)
T COG4152 226 LVIESDLSLEELANIPGILKITETKDGSWRIQIENETVAREIFQEVARDGY 276 (300)
T ss_pred EEEeccCchHHHhcCCCceeeeeccCCceEeecccchHHHHHHHHHhccce
Confidence 22222211211211 11111 1234445556667788888888877765
No 471
>PHA00350 putative assembly protein
Probab=91.20 E-value=0.99 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=17.4
Q ss_pred EEEEccCCCchhHHhHH-HHHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVL-PLLRHI 388 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l-~~l~~~ 388 (615)
.++.|..|||||+.++. .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 57889999999998765 455454
No 472
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.15 Score=50.55 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=68.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH----HHHHHHHHHHhhhhcCcEEEEEEcCC
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL----CMQIGKEAKKFTKSLGLRVVCVYGGT 437 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L----a~q~~~~~~~~~~~~~~~~~~~~g~~ 437 (615)
+.-|++++||||||||+.+. -|..++. -|.++-=+-|-.= -..+.+.+.++.+..++.+.-.--|.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~Ln--------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKILN--------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHhC--------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 45689999999999998754 3334433 3444332222111 23444556666655544332211111
Q ss_pred ChhHHHHHHhcC---CcEE--EE---ChHHHHHHHHhcCCCc-----ccCCCccEEEEccccccc-cCCcHHHHHHHHHh
Q psy12410 438 GISEQISELKRG---AEII--VC---TPGRMIDMLAANSGRV-----TNLRRVTYIVLDEADRMF-DMGFEPQVMRIIDN 503 (615)
Q Consensus 438 ~~~~~~~~l~~~---~~Ii--v~---Tp~~l~~~l~~~~~~~-----~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~ 503 (615)
-.-..+..+... +.|. |+ --+.|+.++.-....+ ..-..=++|-||=-.-+| -.|-...+.+|+..
T Consensus 166 IyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~ 245 (408)
T COG1219 166 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKK 245 (408)
T ss_pred EEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHH
Confidence 111122222211 1111 10 0122333332211000 011234678888777444 34455566666655
Q ss_pred cCCCCcEEEEeccCC
Q psy12410 504 VRPDRQTVMFSATFP 518 (615)
Q Consensus 504 ~~~~~q~l~~SAT~~ 518 (615)
-- ....|+|+|...
T Consensus 246 R~-~~~~iGF~a~~~ 259 (408)
T COG1219 246 RL-GKKGIGFGAEVK 259 (408)
T ss_pred hc-cCCccccccccc
Confidence 33 556788988864
No 473
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.15 E-value=0.55 Score=48.49 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 339 DALKKQNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 339 ~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
..|...|+ +++.+...+..+. .+.+++++|+||+|||..+. .++.++ ....+++++-.+.||
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i--------~~~~riv~iEd~~El 217 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALV--------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccC--------CCCCcEEEECCccee
Confidence 34445554 5667777776655 56799999999999998632 223232 123456777777776
No 474
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.11 E-value=1.1 Score=48.20 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
...++||.|+++.-|..++..+.. .++.+..++|+....+... .+..| ..||||| +.+..+ ++
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~~G----iD 310 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAARG----ID 310 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC----cc
Confidence 456899999999999988777765 4788999999887665533 33344 8999999 444444 67
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 311 ip~v~~VI~ 319 (434)
T PRK11192 311 IDDVSHVIN 319 (434)
T ss_pred CCCCCEEEE
Confidence 888888873
No 475
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.09 E-value=0.95 Score=46.18 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
|+-+.+.+|+|+|||...+..+.+.. . .+..++||..-..+-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~-~-------~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K-------LGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCCEEEECccccHH
Confidence 45678999999999987554444433 2 356688887655443
No 476
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.06 E-value=1 Score=50.42 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
+-+++.||+|+|||.++-
T Consensus 111 ~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIK 128 (637)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 348999999999999743
No 477
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.03 E-value=0.46 Score=49.80 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.+++.||+|+|||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999874
No 478
>PRK06620 hypothetical protein; Validated
Probab=90.98 E-value=1.7 Score=41.74 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=57.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcC-cEEEEEEc--CCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLG-LRVVCVYG--GTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
.--.|+.+...+|......+..-..... .+..++|| |..++.-...+.......+.+...... ..+..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~---------~~~~~ 85 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE---------EILEK 85 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch---------hHHhc
Confidence 3457788877766666554443111111 14578888 455555555554444444444222211 11345
Q ss_pred ccEEEEccccccccCCcHHHHHHHHHhcCC-CCcEEEEeccCChH
Q psy12410 477 VTYIVLDEADRMFDMGFEPQVMRIIDNVRP-DRQTVMFSATFPRQ 520 (615)
Q Consensus 477 ~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-~~q~l~~SAT~~~~ 520 (615)
.++|+|||+|.+- ...+..+++.+.. +.++|+.|.|.|+.
T Consensus 86 ~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 86 YNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred CCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 6789999999542 2455666666644 34555555555553
No 479
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=90.97 E-value=6.1 Score=39.94 Aligned_cols=112 Identities=21% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc-CCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 397 TDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG-GTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 397 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
..+.-+||.+|+.+...|+...++..... ..++++++ +....+....+..| .+|+|+| .+|..+ .-+
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILERG----VTf 371 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILERG----VTF 371 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhcc----ccc
Confidence 44566999999999999998888555443 34455555 34566677777777 7999999 466665 568
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhc-----CCCCcEEEEeccCChHHH
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNV-----RPDRQTVMFSATFPRQME 522 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-----~~~~q~l~~SAT~~~~~~ 522 (615)
.+++++||+--|+++. ...+..|.... .|.--+++|-.-.+..|.
T Consensus 372 p~vdV~Vlgaeh~vfT---esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 372 PNVDVFVLGAEHRVFT---ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred ccceEEEecCCccccc---HHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 8999999998888874 55666666554 234456666555544433
No 480
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.65 E-value=0.81 Score=53.38 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
.|+|++||.|+|||.+.-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 589999999999998754
No 481
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.61 E-value=0.73 Score=44.56 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=26.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|.-+.+.|++|+|||...+..+...+... . ..+....++|+..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~-~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-E-LGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-c-cCCCcceEEEEecC
Confidence 45678889999999998655444443211 0 01112567777653
No 482
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.59 E-value=0.68 Score=46.05 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH-c-CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 351 PIQAQAIPAIM-S-GRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 351 ~~Q~~~i~~i~-~-~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
+.|.+.|..++ . +..+++.|+||||||... ..++.++
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 33444444433 2 345889999999999873 3344454
No 483
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.57 E-value=2.5 Score=37.66 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
+.+-.++|+||.-.-+|......+..++..+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 45667999999998888777777777777663 3 5555444
No 484
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.56 E-value=0.32 Score=54.01 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
.+++++||||||||..+++|.+... +.-+||+=|--++...+....++. |..|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 5789999999999999999988653 234788888888887776655553 5555554
No 485
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.54 E-value=2.2 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=16.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.++++||.|+|||..+.. +..++
T Consensus 41 ~~L~~G~~G~GKt~~a~~-la~~l 63 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI-LARKI 63 (367)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 588999999999976443 34444
No 486
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.52 E-value=0.95 Score=44.50 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHcCCCEEEEccCCCchhHH
Q psy12410 360 IMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~ 379 (615)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999975
No 487
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.50 E-value=1.5 Score=47.47 Aligned_cols=72 Identities=17% Similarity=0.351 Sum_probs=53.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
...++||.|+++.-|..++..+.. .++.+..++|+....+.. ..+..| ..||||| +.+..+ ++
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~rG----iD 310 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNK----DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAARG----LD 310 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHhcC----CC
Confidence 456799999999999888776654 478899999998765443 333444 7999999 455554 77
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 311 ip~v~~VI~ 319 (456)
T PRK10590 311 IEELPHVVN 319 (456)
T ss_pred cccCCEEEE
Confidence 888888873
No 488
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.42 E-value=0.57 Score=52.04 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHc--CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 350 TPIQAQAIPAIMS--GRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 350 ~~~Q~~~i~~i~~--~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
.+.|.+.|..++. +-.+|++||||||||... ..++.++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3444444444433 334789999999999873 3455555
No 489
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=90.41 E-value=1.5 Score=45.91 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 440 (615)
-.+..+++.|+||+||++.+.. ++.+... ...+|.|-|=|-.-. +...... -+|..-+.++|....
T Consensus 99 p~~~~vLi~GetGtGKel~A~~--iH~~s~r----~~~~PFI~~NCa~~~------en~~~~e-LFG~~kGaftGa~~~- 164 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARL--IHALSAR----RAEAPFIAFNCAAYS------ENLQEAE-LFGHEKGAFTGAQGG- 164 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHH--HHHhhhc----ccCCCEEEEEHHHhC------cCHHHHH-HhccccceeecccCC-
Confidence 3688999999999999997532 1122111 035676665543211 1111110 235555555552210
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHh-----c----CCCCcEE
Q psy12410 441 EQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN-----V----RPDRQTV 511 (615)
Q Consensus 441 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~-----~----~~~~q~l 511 (615)
-+|.| ..-+=..+.+||+|+|.-.+ ...+..++.. + .....+-
T Consensus 165 ---------------k~Glf------------e~A~GGtLfLDEI~~LP~~~-Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 165 ---------------KAGLF------------EQANGGTLFLDEIHRLPPEG-QEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred ---------------cCchh------------eecCCCEEehhhhhhCCHhH-HHHHHHHHHcCceEecCCCCCcCCCce
Confidence 11111 11223479999999988443 2333333333 1 1123456
Q ss_pred EEeccCChHHHHHHH--HHc--CCCEEEEECCc
Q psy12410 512 MFSATFPRQMEALAR--RIL--NKPIEIQVGGR 540 (615)
Q Consensus 512 ~~SAT~~~~~~~~~~--~~~--~~p~~i~~~~~ 540 (615)
+++||-.+--+.+.. .++ .+++.|.++..
T Consensus 217 li~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpL 249 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTRRLNILTITLPPL 249 (403)
T ss_pred eeeccccCHHHHHHhhcchhhhhcCceecCCCh
Confidence 677776544444554 333 35555665543
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.39 E-value=1.2 Score=47.90 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
|.-+++.|++|+|||...+..+.+.. . ++.++||+.. .+...|+...+.++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a-~-------~g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLA-K-------NQMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-h-------cCCcEEEEEC-cCCHHHHHHHHHHc
Confidence 45678899999999998554443332 1 2456888875 34456665555444
No 491
>KOG0732|consensus
Probab=90.33 E-value=0.49 Score=54.80 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|.+.|....+++.|+.+-+.-+..-+.-.=..|.--+.+++++|.|+|||+.+
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a-------------------------- 316 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA-------------------------- 316 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHH--------------------------
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEE---EEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEII---VCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ii---v~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
++||......-.++.- ...+|++++ |+..++=+.++... ..-....+|.+|
T Consensus 317 --raLa~~~s~~~~kisf--------------------fmrkgaD~lskwvgEaERqlrllFee----A~k~qPSIIffd 370 (1080)
T KOG0732|consen 317 --RALAAACSRGNRKISF--------------------FMRKGADCLSKWVGEAERQLRLLFEE----AQKTQPSIIFFD 370 (1080)
T ss_pred --Hhhhhhhcccccccch--------------------hhhcCchhhccccCcHHHHHHHHHHH----HhccCceEEecc
Q ss_pred ccc----------ccccCCcHHHHHHHHHhcCCCCcEEEEeccCChH
Q psy12410 484 EAD----------RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 484 Eah----------~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~ 520 (615)
|+| ..........+..++.-+..-.|+++++||.-++
T Consensus 371 eIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 371 EIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred ccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
No 492
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.28 E-value=1.4 Score=47.28 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc----CCcEEEECh
Q psy12410 382 LPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR----GAEIIVCTP 457 (615)
Q Consensus 382 l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Iiv~Tp 457 (615)
+.++..++.. ....++||.|+|+..|..++..+... ++.+.+++|+....+....+.. ..+|+|||
T Consensus 243 ~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT- 312 (423)
T PRK04837 243 MRLLQTLIEE-----EWPDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT- 312 (423)
T ss_pred HHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-
Q ss_pred HHHHHHHHhcCCCcccCCCccEEE
Q psy12410 458 GRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 458 ~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
+.+..+ +++..+++||
T Consensus 313 ----dv~~rG----iDip~v~~VI 328 (423)
T PRK04837 313 ----DVAARG----LHIPAVTHVF 328 (423)
T ss_pred ----chhhcC----CCccccCEEE
No 493
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.17 E-value=9.3 Score=43.70 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHhHH------------------------------HHHHHHhcCCCCCCCCCCeE
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAFVL------------------------------PLLRHILDQPPLEETDGPMA 402 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l------------------------------~~l~~~~~~~~~~~~~~~~~ 402 (615)
|...+.......++|+...|-.-+|++... .++..+...- ..+.++
T Consensus 399 qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~----~~g~q~ 474 (681)
T PRK10917 399 QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI----AKGRQA 474 (681)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH----HcCCcE
Q ss_pred EEEcC--------cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc----CCcEEEEChHHHHHHHHhcCCC
Q psy12410 403 IIMSP--------TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR----GAEIIVCTPGRMIDMLAANSGR 470 (615)
Q Consensus 403 lil~P--------tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Iiv~Tp~~l~~~l~~~~~~ 470 (615)
+|+|| +..-+..+++.+...+.. +.+..++|+....+....+.. ..+|+||| +.+..+
T Consensus 475 ~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~--~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vie~G--- 544 (681)
T PRK10917 475 YVVCPLIEESEKLDLQSAEETYEELQEAFPE--LRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT-----TVIEVG--- 544 (681)
T ss_pred EEEEcccccccchhHHHHHHHHHHHHHHCCC--CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cceeeC---
Q ss_pred cccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCc----EEEEeccCChHHHHHHHHH
Q psy12410 471 VTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ----TVMFSATFPRQMEALARRI 528 (615)
Q Consensus 471 ~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q----~l~~SAT~~~~~~~~~~~~ 528 (615)
.++.++++||+..++++. ..++........-.-. +++++..........+..+
T Consensus 545 -iDip~v~~VIi~~~~r~g----ls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~ 601 (681)
T PRK10917 545 -VDVPNATVMVIENAERFG----LAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIM 601 (681)
T ss_pred -cccCCCcEEEEeCCCCCC----HHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHH
No 494
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.13 E-value=1.8 Score=43.12 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 349 PTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
+.+........+-.+ +++++.+|+|+|||+. +-.+...+........-.+..+.++-...+++..+.-..+.....-
T Consensus 95 ~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl-~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 95 LGAADKLLPYLVRNNRVLNTLIISPPQCGKTTL-LRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred CCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHH-HHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccc
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
.+++-.-|..--.+.. .....-++||+|| .+....+..++..+..
T Consensus 174 -----------------------~~v~~~~~k~~~~~~~------i~~~~P~villDE------~~~~e~~~~l~~~~~~ 218 (270)
T TIGR02858 174 -----------------------TDVLDGCPKAEGMMML------IRSMSPDVIVVDE------IGREEDVEALLEALHA 218 (270)
T ss_pred -----------------------ccccccchHHHHHHHH------HHhCCCCEEEEeC------CCcHHHHHHHHHHHhC
Q ss_pred CCcEEEEe
Q psy12410 507 DRQTVMFS 514 (615)
Q Consensus 507 ~~q~l~~S 514 (615)
...+|+.|
T Consensus 219 G~~vI~tt 226 (270)
T TIGR02858 219 GVSIIATA 226 (270)
T ss_pred CCEEEEEe
No 495
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.09 E-value=1.3 Score=49.49 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc----
Q psy12410 360 IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG---- 435 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g---- 435 (615)
+..|.-+-++||||||||+. +-++..++. .....++| .-..+..=-...+.+......-....+.|
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl--~~LL~r~~~------~~~G~I~i--dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~ 421 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL--IKLLLRLYD------PTSGEILI--DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccCC------CCCCeEEE--CCEehhhcCHHHHHHhccEEcccceeecccHHH
Q ss_pred -------------------CCChhHHHHHHhcCCcEEEE------ChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 436 -------------------GTGISEQISELKRGAEIIVC------TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 436 -------------------~~~~~~~~~~l~~~~~Iiv~------Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
-....+.+..+..|.+-+|+ +.|.-..+.-.. .-+.+-.++|+|||..-+|
T Consensus 422 NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR----all~~~~ILILDEaTSalD 497 (567)
T COG1132 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR----ALLRNPPILILDEATSALD 497 (567)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH----HHhcCCCEEEEeccccccC
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 491 MGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 491 ~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+..+...+..+..++.+|+.+
T Consensus 498 ~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 498 TETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred HHhHHHHHHHHHHHhcCCEEEEEe
No 496
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.03 E-value=0.5 Score=42.80 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCC----------eEEEEcCcHHHHHHHHHHHHHhhhhcCcE
Q psy12410 360 IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGP----------MAIIMSPTRELCMQIGKEAKKFTKSLGLR 429 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~----------~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 429 (615)
+..|.-+.+.|++|+|||..+-+.+-..-............ ..+.++|-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------------------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------------------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee---------------------
Q ss_pred EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCc
Q psy12410 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 509 (615)
Q Consensus 430 ~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q 509 (615)
.+.|....+.-.. .......++|+||.-.-+|......+..++..+....+
T Consensus 81 -------------------------lS~G~~~r~~l~~----~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~ 131 (157)
T cd00267 81 -------------------------LSGGQRQRVALAR----ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131 (157)
T ss_pred -------------------------CCHHHHHHHHHHH----HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC
Q ss_pred EEEEeccCChHHHHHH
Q psy12410 510 TVMFSATFPRQMEALA 525 (615)
Q Consensus 510 ~l~~SAT~~~~~~~~~ 525 (615)
+++++.-....+..++
T Consensus 132 tii~~sh~~~~~~~~~ 147 (157)
T cd00267 132 TVIIVTHDPELAELAA 147 (157)
T ss_pred EEEEEeCCHHHHHHhC
No 497
>KOG1513|consensus
Probab=89.92 E-value=0.28 Score=54.11 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHcCCCE----------EEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIMSGRDL----------IGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~----------i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
.+...|.+++-...+.... |+-...|.||--...-.|+...++. ..++|++.-...|-....+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhh
Q ss_pred HHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCccc----------CCCccEEEEcccc
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTN----------LRRVTYIVLDEAD 486 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~----------l~~~~~lVvDEah 486 (615)
.+..+... +|.|..+.--....-....-.+- --||+||+-.|+-.......+... -..-.+||+||||
T Consensus 337 DL~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 337 DLRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred chhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Q ss_pred cccc---------CCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 487 RMFD---------MGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 487 ~~~~---------~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
...+ ......+..+-..++..+ +|.-|||
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASAT 453 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASAT 453 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeecc
No 498
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.90 E-value=3.6 Score=48.30 Aligned_cols=133 Identities=16% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHH--HHhcCCCC-----------------------CCCCCCeEEEEcC
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR--HILDQPPL-----------------------EETDGPMAIIMSP 407 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~--~~~~~~~~-----------------------~~~~~~~~lil~P 407 (615)
|++-|..+...-|+|-...|--=.|+-..+.-+. .++..|+. ....|++|.||.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Q ss_pred cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 408 TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 408 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
..+-..++...+..+.+ ..++++.+|.+...+. .....+| ++|+||| .++..+ ++..+...|||+
T Consensus 812 rV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIEtG----IDIPnANTiIIe 880 (1139)
T COG1197 812 RVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIETG----IDIPNANTIIIE 880 (1139)
T ss_pred chhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeeecC----cCCCCCceEEEe
Q ss_pred cccccccCCcHHHHHHH
Q psy12410 484 EADRMFDMGFEPQVMRI 500 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i 500 (615)
-||+|. ..++-.+
T Consensus 881 ~AD~fG----LsQLyQL 893 (1139)
T COG1197 881 RADKFG----LAQLYQL 893 (1139)
T ss_pred cccccc----HHHHHHh
No 499
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.90 E-value=2.1 Score=50.10 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHH--cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH-----HHHHHHHHHHhhhhc
Q psy12410 354 AQAIPAIM--SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL-----CMQIGKEAKKFTKSL 426 (615)
Q Consensus 354 ~~~i~~i~--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-----a~q~~~~~~~~~~~~ 426 (615)
.+++..+. ...++|++||+|+|||.+ +-.+...+....-.....+..++.+-...-+ .-++.+.++.+...
T Consensus 189 ~~~~~~L~r~~~~n~lL~G~pGvGKTal-~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~- 266 (821)
T CHL00095 189 ERVIQILGRRTKNNPILIGEPGVGKTAI-AEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDE- 266 (821)
T ss_pred HHHHHHHcccccCCeEEECCCCCCHHHH-HHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHH-
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC---cHHHHHHHHHh
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG---FEPQVMRIIDN 503 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~---~~~~~~~i~~~ 503 (615)
..-..-.+|+|||+|.++..+ -...+..++..
T Consensus 267 ---------------------------------------------~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp 301 (821)
T CHL00095 267 ---------------------------------------------IQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP 301 (821)
T ss_pred ---------------------------------------------HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH
Q ss_pred cCCCCcEEEEeccCChHHHHHHH
Q psy12410 504 VRPDRQTVMFSATFPRQMEALAR 526 (615)
Q Consensus 504 ~~~~~q~l~~SAT~~~~~~~~~~ 526 (615)
.-....+.++.||-+++....+.
T Consensus 302 ~l~rg~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 302 ALARGELQCIGATTLDEYRKHIE 324 (821)
T ss_pred HHhCCCcEEEEeCCHHHHHHHHh
No 500
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.84 E-value=0.24 Score=45.84 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 436 GTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 436 ~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
+.-...........++|||++...|.+-....... .....-.+|||||||.+.+
T Consensus 106 ~~CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~-~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 106 GVCPYYLARELAKNADIVICNYNYLFDPSIRKSLF-GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp T--HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHC-T--CCCEEEEETTGGGCGG
T ss_pred CCChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhc-cccccCcEEEEecccchHH
Done!