Query psy12410
Match_columns 615
No_of_seqs 535 out of 3907
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 18:33:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.4E-48 4.9E-53 417.9 35.4 297 313-614 43-341 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.5E-43 5.1E-48 377.7 35.0 298 314-614 3-317 (417)
3 3fe2_A Probable ATP-dependent 100.0 3E-41 1E-45 332.4 28.6 238 299-540 3-240 (242)
4 2j0s_A ATP-dependent RNA helic 100.0 2.2E-41 7.4E-46 360.2 29.1 287 319-614 30-317 (410)
5 1s2m_A Putative ATP-dependent 100.0 3.3E-39 1.1E-43 342.2 30.6 283 322-614 17-299 (400)
6 3eiq_A Eukaryotic initiation f 100.0 1.6E-39 5.5E-44 346.1 27.9 286 320-614 34-321 (414)
7 1xti_A Probable ATP-dependent 100.0 1.4E-38 4.8E-43 336.2 31.6 280 326-614 8-291 (391)
8 3pey_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 333.5 30.9 278 324-614 3-284 (395)
9 3fht_A ATP-dependent RNA helic 100.0 2.5E-38 8.5E-43 336.6 30.0 283 321-614 20-307 (412)
10 1fuu_A Yeast initiation factor 100.0 3.8E-39 1.3E-43 340.8 23.4 285 321-615 16-301 (394)
11 3fmp_B ATP-dependent RNA helic 100.0 4.4E-39 1.5E-43 349.4 21.2 281 324-615 90-375 (479)
12 1hv8_A Putative ATP-dependent 100.0 1.7E-37 5.7E-42 324.7 31.7 274 325-614 5-279 (367)
13 3sqw_A ATP-dependent RNA helic 100.0 1.1E-37 3.9E-42 345.8 28.8 288 324-614 15-332 (579)
14 1wrb_A DJVLGB; RNA helicase, D 100.0 7.2E-38 2.5E-42 310.5 22.9 234 314-550 9-252 (253)
15 3i5x_A ATP-dependent RNA helic 100.0 6E-37 2E-41 339.5 30.2 279 333-614 79-383 (563)
16 3iuy_A Probable ATP-dependent 100.0 2.5E-37 8.7E-42 301.6 23.2 216 318-537 11-228 (228)
17 3ber_A Probable ATP-dependent 100.0 6.1E-37 2.1E-41 302.6 24.0 210 322-538 39-248 (249)
18 3dkp_A Probable ATP-dependent 100.0 1.4E-36 4.6E-41 299.8 22.8 232 303-540 3-243 (245)
19 3fmo_B ATP-dependent RNA helic 100.0 1.3E-36 4.4E-41 308.3 23.1 215 314-538 77-298 (300)
20 3bor_A Human initiation factor 100.0 1.4E-36 4.9E-41 298.0 21.5 213 318-538 22-235 (237)
21 2pl3_A Probable ATP-dependent 100.0 1.2E-35 4E-40 291.4 26.4 229 301-539 6-234 (236)
22 2oxc_A Probable ATP-dependent 100.0 5.5E-36 1.9E-40 292.5 22.9 212 317-537 15-228 (230)
23 1vec_A ATP-dependent RNA helic 100.0 1.7E-35 6E-40 283.8 25.5 202 326-535 3-205 (206)
24 1qde_A EIF4A, translation init 100.0 8.8E-36 3E-40 289.8 23.2 214 319-541 7-220 (224)
25 1q0u_A Bstdead; DEAD protein, 100.0 3.1E-36 1.1E-40 292.0 19.6 208 324-539 2-213 (219)
26 3fho_A ATP-dependent RNA helic 100.0 3.2E-36 1.1E-40 328.4 18.9 282 321-615 114-399 (508)
27 2gxq_A Heat resistant RNA depe 100.0 7.4E-35 2.5E-39 279.6 25.2 204 327-537 2-205 (207)
28 2z0m_A 337AA long hypothetical 100.0 1.5E-34 5.3E-39 298.6 29.4 257 333-614 1-257 (337)
29 1t6n_A Probable ATP-dependent 100.0 8.8E-35 3E-39 282.0 22.4 211 318-536 6-219 (220)
30 3ly5_A ATP-dependent RNA helic 100.0 1.1E-34 3.7E-39 288.7 23.2 204 327-533 53-258 (262)
31 2v1x_A ATP-dependent DNA helic 100.0 2E-34 7E-39 317.4 27.0 272 323-614 16-308 (591)
32 3oiy_A Reverse gyrase helicase 100.0 4E-34 1.4E-38 304.6 18.0 247 337-606 10-286 (414)
33 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-32 5.1E-37 299.5 25.0 264 326-614 2-277 (523)
34 1tf5_A Preprotein translocase 100.0 2.3E-33 7.7E-38 309.3 16.5 307 281-613 21-472 (844)
35 3l9o_A ATP-dependent RNA helic 100.0 1.4E-32 4.6E-37 321.5 19.6 264 327-615 163-522 (1108)
36 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-31 4.8E-36 304.3 25.9 267 325-615 7-330 (715)
37 2zj8_A DNA helicase, putative 100.0 5.6E-32 1.9E-36 307.5 17.3 266 327-615 2-312 (720)
38 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-31 7.1E-36 311.3 21.4 239 344-606 75-343 (1104)
39 4a2p_A RIG-I, retinoic acid in 100.0 1.8E-30 6.3E-35 286.9 26.4 169 345-518 4-177 (556)
40 2p6r_A Afuhel308 helicase; pro 100.0 4.6E-32 1.6E-36 307.4 13.5 265 327-615 2-314 (702)
41 2fsf_A Preprotein translocase 100.0 4E-31 1.4E-35 290.6 18.1 257 344-613 71-481 (853)
42 2ykg_A Probable ATP-dependent 100.0 6.7E-31 2.3E-35 298.4 19.2 175 339-518 4-184 (696)
43 3tbk_A RIG-I helicase domain; 100.0 1.4E-29 4.6E-34 279.8 27.6 168 347-519 3-176 (555)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-31 8.6E-36 310.9 13.6 245 339-610 48-311 (1054)
45 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-29 4.1E-34 291.2 25.5 170 344-518 244-418 (797)
46 2xgj_A ATP-dependent RNA helic 100.0 3.4E-29 1.2E-33 290.3 27.0 244 345-615 84-424 (1010)
47 1nkt_A Preprotein translocase 100.0 3.6E-30 1.2E-34 283.3 17.4 258 343-613 107-500 (922)
48 4a4z_A Antiviral helicase SKI2 100.0 2.1E-29 7.1E-34 292.1 20.1 161 348-529 39-199 (997)
49 4f92_B U5 small nuclear ribonu 100.0 1.4E-28 4.8E-33 297.2 25.9 271 333-615 911-1231(1724)
50 4a2w_A RIG-I, retinoic acid in 100.0 8.8E-29 3E-33 287.1 22.9 170 344-518 244-418 (936)
51 4f92_B U5 small nuclear ribonu 100.0 2.7E-28 9.3E-33 294.7 25.5 265 345-615 76-396 (1724)
52 1wp9_A ATP-dependent RNA helic 100.0 7.2E-28 2.5E-32 260.9 25.9 169 348-528 9-180 (494)
53 2eyq_A TRCF, transcription-rep 100.0 2.3E-27 7.9E-32 279.0 28.0 257 331-614 586-855 (1151)
54 1gm5_A RECG; helicase, replica 100.0 3.4E-28 1.2E-32 273.5 18.1 252 336-614 357-630 (780)
55 4gl2_A Interferon-induced heli 99.9 1.4E-28 4.9E-33 279.3 10.6 170 347-519 6-193 (699)
56 2xau_A PRE-mRNA-splicing facto 99.9 4.1E-27 1.4E-31 266.5 15.8 272 322-615 68-356 (773)
57 2oca_A DAR protein, ATP-depend 99.9 2E-27 6.8E-32 259.8 11.0 248 346-614 111-388 (510)
58 2jlq_A Serine protease subunit 99.9 1.5E-26 5.2E-31 247.9 8.4 223 345-610 1-225 (451)
59 3o8b_A HCV NS3 protease/helica 99.9 1.6E-26 5.5E-31 253.0 8.4 218 348-613 217-436 (666)
60 2whx_A Serine protease/ntpase/ 99.9 3E-27 1E-31 261.1 0.1 233 331-606 155-388 (618)
61 2fwr_A DNA repair protein RAD2 99.9 1.2E-24 4.1E-29 235.4 16.9 227 347-614 92-385 (472)
62 3b6e_A Interferon-induced heli 99.9 1.1E-24 3.9E-29 209.7 12.3 169 345-516 30-216 (216)
63 2ipc_A Preprotein translocase 99.9 2.4E-22 8.3E-27 220.4 25.9 133 344-489 76-215 (997)
64 3h1t_A Type I site-specific re 99.9 5.5E-24 1.9E-28 236.6 11.3 251 347-613 177-486 (590)
65 3llm_A ATP-dependent RNA helic 99.9 3.7E-23 1.3E-27 202.0 15.3 182 335-533 48-232 (235)
66 1yks_A Genome polyprotein [con 99.9 2.5E-25 8.4E-30 237.5 -0.5 201 359-606 4-210 (440)
67 2z83_A Helicase/nucleoside tri 99.9 5.4E-24 1.9E-28 228.4 9.6 204 357-606 15-223 (459)
68 2wv9_A Flavivirin protease NS2 99.9 1.3E-24 4.3E-29 241.7 4.6 216 348-606 215-443 (673)
69 2v6i_A RNA helicase; membrane, 99.9 3.6E-23 1.2E-27 220.3 14.4 204 362-607 1-205 (431)
70 1rif_A DAR protein, DNA helica 99.9 5.1E-23 1.7E-27 206.9 10.1 156 347-522 112-267 (282)
71 3rc3_A ATP-dependent RNA helic 99.9 2.6E-22 8.9E-27 222.4 8.0 212 357-614 149-361 (677)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 8.1E-21 2.8E-25 219.1 16.7 157 347-520 270-441 (1038)
73 1z63_A Helicase of the SNF2/RA 99.8 1.9E-20 6.6E-25 203.9 18.3 244 347-614 36-383 (500)
74 3dmq_A RNA polymerase-associat 99.8 6.8E-21 2.3E-25 221.3 13.3 159 347-518 152-317 (968)
75 3jux_A Protein translocase sub 99.8 6.4E-19 2.2E-23 190.2 23.1 254 344-613 72-514 (822)
76 3mwy_W Chromo domain-containin 99.8 5.2E-19 1.8E-23 202.4 20.6 252 347-614 235-613 (800)
77 2fz4_A DNA repair protein RAD2 99.8 3.7E-19 1.3E-23 173.5 16.5 139 347-520 92-231 (237)
78 1z3i_X Similar to RAD54-like; 99.8 3.8E-18 1.3E-22 190.5 23.1 160 348-518 55-231 (644)
79 3crv_A XPD/RAD3 related DNA he 99.6 1.5E-15 5.2E-20 166.5 13.1 130 348-490 3-187 (551)
80 1c4o_A DNA nucleotide excision 99.5 1.5E-13 5.2E-18 153.2 18.7 101 506-614 379-480 (664)
81 2vl7_A XPD; helicase, unknown 99.5 1.7E-14 5.7E-19 157.7 8.9 130 345-490 5-189 (540)
82 2d7d_A Uvrabc system protein B 99.4 3.2E-12 1.1E-16 142.5 19.2 101 506-614 385-486 (661)
83 4a15_A XPD helicase, ATP-depen 99.4 1.2E-12 4.2E-17 144.6 10.1 83 347-436 2-88 (620)
84 1w36_D RECD, exodeoxyribonucle 99.0 9.6E-10 3.3E-14 121.4 10.0 144 350-514 151-296 (608)
85 2p6n_A ATP-dependent RNA helic 98.8 8.5E-09 2.9E-13 96.3 7.1 87 526-614 9-95 (191)
86 2jgn_A DBX, DDX3, ATP-dependen 98.5 1.6E-07 5.4E-12 87.2 7.6 74 541-614 14-87 (185)
87 2hjv_A ATP-dependent RNA helic 98.5 3.6E-07 1.2E-11 82.9 8.2 72 542-614 5-76 (163)
88 1t5i_A C_terminal domain of A 98.4 3.3E-07 1.1E-11 84.0 8.0 70 544-614 3-72 (172)
89 2rb4_A ATP-dependent RNA helic 98.4 5.1E-07 1.8E-11 82.9 8.3 71 543-614 4-75 (175)
90 4b3f_X DNA-binding protein smu 98.4 6.5E-06 2.2E-10 91.7 17.6 68 347-422 188-256 (646)
91 3lfu_A DNA helicase II; SF1 he 98.3 5.9E-05 2E-09 84.1 24.1 72 347-424 8-79 (647)
92 1fuk_A Eukaryotic initiation f 98.3 7.4E-07 2.5E-11 81.0 7.0 69 545-614 2-71 (165)
93 3e1s_A Exodeoxyribonuclease V, 98.3 1.7E-06 5.7E-11 94.6 10.7 126 347-514 188-313 (574)
94 2gk6_A Regulator of nonsense t 98.3 4.9E-06 1.7E-10 92.2 14.7 70 346-422 178-247 (624)
95 3upu_A ATP-dependent DNA helic 98.3 2.5E-06 8.5E-11 91.1 11.7 134 343-514 20-162 (459)
96 2xzl_A ATP-dependent helicase 98.2 1.2E-05 4.1E-10 91.1 15.3 70 346-422 358-427 (802)
97 2wjy_A Regulator of nonsense t 98.2 7.9E-06 2.7E-10 92.5 13.5 70 346-422 354-423 (800)
98 3i32_A Heat resistant RNA depe 98.1 4.8E-06 1.6E-10 83.2 7.2 68 546-614 2-69 (300)
99 2yjt_D ATP-dependent RNA helic 97.2 1.2E-06 4.1E-11 80.0 0.0 69 546-615 3-72 (170)
100 3eaq_A Heat resistant RNA depe 97.9 8.5E-06 2.9E-10 77.2 5.7 67 547-614 6-72 (212)
101 2o0j_A Terminase, DNA packagin 97.9 0.00027 9.2E-09 72.6 15.8 73 348-426 163-235 (385)
102 1uaa_A REP helicase, protein ( 97.7 0.0011 3.7E-08 74.2 18.8 71 348-424 2-72 (673)
103 3cpe_A Terminase, DNA packagin 97.5 0.0016 5.5E-08 71.4 16.0 146 347-518 162-314 (592)
104 3ec2_A DNA replication protein 97.1 0.0016 5.5E-08 59.4 9.6 32 350-381 16-56 (180)
105 3kl4_A SRP54, signal recogniti 97.1 0.0023 7.9E-08 66.7 11.1 132 364-529 98-235 (433)
106 2b8t_A Thymidine kinase; deoxy 96.9 0.00079 2.7E-08 63.7 5.5 91 363-489 12-102 (223)
107 3vkw_A Replicase large subunit 96.9 0.0016 5.6E-08 67.6 7.8 87 365-492 163-249 (446)
108 2orw_A Thymidine kinase; TMTK, 96.9 0.0034 1.2E-07 57.6 9.0 39 362-408 2-40 (184)
109 3te6_A Regulatory protein SIR3 96.8 0.0081 2.8E-07 60.0 12.2 27 362-389 44-70 (318)
110 1xx6_A Thymidine kinase; NESG, 96.8 0.0018 6.2E-08 59.7 6.6 38 363-408 8-45 (191)
111 3dm5_A SRP54, signal recogniti 96.7 0.011 3.7E-07 61.7 12.4 58 365-433 102-161 (443)
112 2kjq_A DNAA-related protein; s 96.6 0.0012 4.1E-08 58.4 3.6 20 362-381 35-54 (149)
113 1z5z_A Helicase of the SNF2/RA 96.5 0.0014 4.9E-08 64.1 4.1 61 554-614 92-154 (271)
114 2zpa_A Uncharacterized protein 96.5 0.0046 1.6E-07 67.6 8.3 113 348-518 175-289 (671)
115 2orv_A Thymidine kinase; TP4A 96.5 0.0081 2.8E-07 56.5 8.7 39 363-409 19-57 (234)
116 2j9r_A Thymidine kinase; TK1, 96.4 0.0032 1.1E-07 58.7 5.5 39 364-410 29-67 (214)
117 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0047 1.6E-07 57.5 5.3 40 362-409 27-66 (219)
118 1g5t_A COB(I)alamin adenosyltr 96.2 0.04 1.4E-06 50.5 11.4 140 364-525 29-171 (196)
119 1l8q_A Chromosomal replication 96.2 0.026 8.9E-07 56.6 11.3 19 363-381 37-55 (324)
120 1jbk_A CLPB protein; beta barr 96.2 0.032 1.1E-06 50.6 10.9 18 363-380 43-60 (195)
121 1pjr_A PCRA; DNA repair, DNA r 96.1 0.012 4E-07 66.2 9.1 81 347-433 10-92 (724)
122 2p65_A Hypothetical protein PF 96.1 0.0065 2.2E-07 55.1 5.8 19 363-381 43-61 (187)
123 3h4m_A Proteasome-activating n 96.1 0.0062 2.1E-07 59.9 5.9 54 324-380 12-68 (285)
124 4b4t_J 26S protease regulatory 96.1 0.0078 2.7E-07 61.8 6.6 54 324-380 143-199 (405)
125 1d2n_A N-ethylmaleimide-sensit 95.9 0.069 2.4E-06 52.0 12.5 18 364-381 65-82 (272)
126 1a5t_A Delta prime, HOLB; zinc 95.9 0.015 5.3E-07 58.7 7.9 40 349-389 3-49 (334)
127 2z4s_A Chromosomal replication 95.8 0.042 1.5E-06 57.7 11.3 41 476-516 194-236 (440)
128 3u4q_A ATP-dependent helicase/ 95.8 0.012 4.3E-07 70.0 8.0 72 347-422 9-80 (1232)
129 2w58_A DNAI, primosome compone 95.8 0.064 2.2E-06 49.5 11.3 18 364-381 55-72 (202)
130 4b4t_M 26S protease regulatory 95.7 0.0059 2E-07 63.6 3.8 56 322-380 174-232 (434)
131 3n70_A Transport activator; si 95.6 0.036 1.2E-06 48.3 8.1 21 361-381 22-42 (145)
132 2chg_A Replication factor C sm 95.6 0.093 3.2E-06 48.7 11.6 40 475-515 101-140 (226)
133 3vfd_A Spastin; ATPase, microt 95.5 0.14 4.9E-06 52.7 13.5 18 363-380 148-165 (389)
134 3syl_A Protein CBBX; photosynt 95.5 0.021 7.1E-07 56.8 6.9 19 363-381 67-85 (309)
135 3b9p_A CG5977-PA, isoform A; A 95.4 0.11 3.9E-06 51.1 12.1 47 324-380 16-71 (297)
136 1w4r_A Thymidine kinase; type 95.4 0.027 9.1E-07 51.6 6.7 38 363-408 20-57 (195)
137 4b4t_L 26S protease subunit RP 95.4 0.013 4.4E-07 61.1 5.1 55 323-380 175-232 (437)
138 3eie_A Vacuolar protein sortin 95.3 0.1 3.6E-06 52.1 11.7 51 324-380 13-68 (322)
139 2qgz_A Helicase loader, putati 95.3 0.048 1.6E-06 54.3 9.0 19 363-381 152-170 (308)
140 2v1u_A Cell division control p 95.3 0.057 1.9E-06 55.3 9.7 18 363-380 44-61 (387)
141 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.18 6.2E-06 50.4 13.1 51 324-380 7-62 (322)
142 4b4t_I 26S protease regulatory 95.2 0.024 8.2E-07 58.5 6.5 55 323-380 176-233 (437)
143 3u61_B DNA polymerase accessor 95.2 0.026 8.9E-07 56.6 6.7 41 475-515 104-144 (324)
144 4b4t_K 26S protease regulatory 95.2 0.017 5.7E-07 60.1 5.1 54 324-380 167-223 (428)
145 2qby_B CDC6 homolog 3, cell di 95.0 0.052 1.8E-06 55.7 8.5 18 363-380 45-62 (384)
146 3bos_A Putative DNA replicatio 95.0 0.018 6.3E-07 54.6 4.7 20 362-381 51-70 (242)
147 3cf0_A Transitional endoplasmi 95.0 0.24 8.2E-06 49.0 12.9 54 324-380 10-66 (301)
148 4b4t_H 26S protease regulatory 94.8 0.034 1.2E-06 57.9 6.2 55 323-380 203-260 (467)
149 3d8b_A Fidgetin-like protein 1 94.7 0.14 4.7E-06 52.1 10.7 19 363-381 117-135 (357)
150 1sxj_E Activator 1 40 kDa subu 94.7 0.092 3.1E-06 53.2 9.2 41 475-516 133-173 (354)
151 1njg_A DNA polymerase III subu 94.6 0.49 1.7E-05 44.2 13.7 16 365-380 47-62 (250)
152 2qp9_X Vacuolar protein sortin 94.5 0.17 5.9E-06 51.4 10.7 19 363-381 84-102 (355)
153 1lv7_A FTSH; alpha/beta domain 94.5 0.22 7.6E-06 47.8 11.0 18 363-380 45-62 (257)
154 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.062 2.1E-06 51.8 6.8 19 363-381 39-57 (262)
155 1fnn_A CDC6P, cell division co 94.4 0.064 2.2E-06 55.0 7.3 16 365-380 46-61 (389)
156 2p6n_A ATP-dependent RNA helic 94.4 0.34 1.2E-05 44.3 11.4 71 399-482 54-128 (191)
157 3pfi_A Holliday junction ATP-d 94.3 0.16 5.6E-06 50.9 10.0 17 364-380 56-72 (338)
158 2q6t_A DNAB replication FORK h 94.3 0.16 5.6E-06 53.2 10.2 38 363-407 200-237 (444)
159 2r6a_A DNAB helicase, replicat 94.2 0.19 6.6E-06 52.9 10.7 38 362-406 202-239 (454)
160 1ls1_A Signal recognition part 94.2 0.22 7.4E-06 49.1 10.4 53 475-527 179-232 (295)
161 1jr3_A DNA polymerase III subu 94.2 0.18 6E-06 51.3 10.2 39 474-513 117-155 (373)
162 2px0_A Flagellar biosynthesis 94.1 0.22 7.4E-06 49.1 10.2 23 362-384 104-126 (296)
163 2hjv_A ATP-dependent RNA helic 94.1 0.15 5.1E-06 45.3 8.1 73 399-484 35-111 (163)
164 3hu3_A Transitional endoplasmi 93.9 0.059 2E-06 57.3 5.9 43 477-519 298-350 (489)
165 3pvs_A Replication-associated 93.8 0.088 3E-06 55.3 7.0 18 364-381 51-68 (447)
166 2dr3_A UPF0273 protein PH0284; 93.8 0.27 9.3E-06 46.5 10.0 50 362-420 22-71 (247)
167 2rb4_A ATP-dependent RNA helic 93.8 0.18 6.1E-06 45.3 8.1 72 398-482 33-108 (175)
168 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.15 5E-06 47.9 7.9 23 362-384 22-44 (235)
169 2qby_A CDC6 homolog 1, cell di 93.7 0.17 5.9E-06 51.5 8.9 19 363-381 45-63 (386)
170 1sxj_A Activator 1 95 kDa subu 93.5 0.57 2E-05 50.1 13.0 41 475-517 147-189 (516)
171 1iqp_A RFCS; clamp loader, ext 93.5 0.24 8.4E-06 49.1 9.4 39 475-514 109-147 (327)
172 3bh0_A DNAB-like replicative h 93.4 0.68 2.3E-05 46.0 12.4 36 363-406 68-103 (315)
173 1fuk_A Eukaryotic initiation f 93.3 0.25 8.6E-06 43.8 8.3 73 399-484 30-106 (165)
174 1vma_A Cell division protein F 93.3 0.39 1.3E-05 47.5 10.3 19 364-382 105-123 (306)
175 2ffh_A Protein (FFH); SRP54, s 93.2 0.62 2.1E-05 48.2 12.0 22 363-384 98-119 (425)
176 1sxj_D Activator 1 41 kDa subu 93.1 0.16 5.5E-06 51.2 7.4 39 475-514 132-170 (353)
177 2ce7_A Cell division protein F 93.1 0.13 4.5E-06 54.3 6.8 17 364-380 50-66 (476)
178 3eaq_A Heat resistant RNA depe 92.9 0.25 8.4E-06 46.1 7.8 71 399-482 31-105 (212)
179 2gno_A DNA polymerase III, gam 92.9 0.38 1.3E-05 47.6 9.5 42 474-517 80-121 (305)
180 3cmu_A Protein RECA, recombina 92.8 0.19 6.6E-06 61.5 8.4 45 357-409 1415-1465(2050)
181 1hqc_A RUVB; extended AAA-ATPa 92.7 0.29 9.9E-06 48.7 8.5 18 363-380 38-55 (324)
182 2zan_A Vacuolar protein sortin 92.6 0.2 6.8E-06 52.6 7.4 18 363-380 167-184 (444)
183 4a1f_A DNAB helicase, replicat 92.5 0.25 8.7E-06 49.5 7.7 37 363-407 46-82 (338)
184 1sxj_B Activator 1 37 kDa subu 92.5 0.14 4.6E-06 50.9 5.8 38 476-514 107-144 (323)
185 3e70_C DPA, signal recognition 92.5 0.64 2.2E-05 46.5 10.6 54 476-529 211-265 (328)
186 2jgn_A DBX, DDX3, ATP-dependen 92.5 0.33 1.1E-05 44.1 7.9 72 398-482 45-120 (185)
187 1sxj_C Activator 1 40 kDa subu 92.4 0.39 1.3E-05 48.3 9.0 39 475-514 109-147 (340)
188 3t15_A Ribulose bisphosphate c 91.9 0.067 2.3E-06 52.8 2.7 17 364-380 37-53 (293)
189 1cr0_A DNA primase/helicase; R 91.8 1.2 4.1E-05 43.5 11.8 24 362-385 34-57 (296)
190 1t5i_A C_terminal domain of A 91.8 1.4 4.7E-05 39.3 11.1 73 399-484 31-107 (172)
191 1nlf_A Regulatory protein REPA 91.7 1.4 4.9E-05 42.6 12.1 25 361-385 28-52 (279)
192 1um8_A ATP-dependent CLP prote 91.7 0.31 1.1E-05 49.7 7.5 19 363-381 72-90 (376)
193 3uk6_A RUVB-like 2; hexameric 91.7 0.92 3.1E-05 45.9 11.1 19 363-381 70-88 (368)
194 2ehv_A Hypothetical protein PH 91.6 0.4 1.4E-05 45.5 7.8 44 475-518 134-182 (251)
195 1qvr_A CLPB protein; coiled co 91.5 0.46 1.6E-05 54.3 9.3 19 363-381 191-209 (854)
196 3i5x_A ATP-dependent RNA helic 91.3 1.2 4E-05 48.1 12.0 78 398-485 338-419 (563)
197 3cf2_A TER ATPase, transitiona 91.2 0.25 8.5E-06 55.4 6.5 42 477-518 298-349 (806)
198 1w5s_A Origin recognition comp 90.9 0.35 1.2E-05 49.8 7.0 17 364-380 51-69 (412)
199 2x8a_A Nuclear valosin-contain 90.9 0.34 1.2E-05 47.1 6.4 54 324-380 5-61 (274)
200 3cf2_A TER ATPase, transitiona 90.7 0.15 5.2E-06 57.2 4.2 56 322-380 470-528 (806)
201 3hjh_A Transcription-repair-co 90.7 0.54 1.8E-05 49.6 8.2 52 363-425 14-65 (483)
202 2d7d_A Uvrabc system protein B 90.7 4.3 0.00015 44.7 15.9 93 398-503 444-540 (661)
203 2fna_A Conserved hypothetical 90.5 8.2 0.00028 38.1 16.8 37 478-516 139-178 (357)
204 3sqw_A ATP-dependent RNA helic 90.5 1.6 5.4E-05 47.4 12.0 78 398-485 287-368 (579)
205 2xxa_A Signal recognition part 90.4 1.1 3.6E-05 46.7 10.1 86 365-460 102-195 (433)
206 2v3c_C SRP54, signal recogniti 90.2 0.18 6E-06 52.6 3.9 21 364-384 100-120 (432)
207 2i4i_A ATP-dependent RNA helic 90.0 1.8 6E-05 44.5 11.5 72 398-482 275-350 (417)
208 2zts_A Putative uncharacterize 90.0 0.26 8.8E-06 46.8 4.7 26 363-388 30-55 (251)
209 3i32_A Heat resistant RNA depe 89.9 0.52 1.8E-05 46.4 6.9 71 399-482 28-102 (300)
210 1j8m_F SRP54, signal recogniti 89.8 1.3 4.3E-05 43.6 9.6 54 475-528 179-235 (297)
211 3gk5_A Uncharacterized rhodane 89.6 0.43 1.5E-05 39.0 5.1 47 563-609 45-91 (108)
212 1c4o_A DNA nucleotide excision 89.2 4.8 0.00016 44.3 14.7 77 399-488 439-519 (664)
213 2j37_W Signal recognition part 89.2 2.6 9.1E-05 44.5 12.1 20 365-384 103-122 (504)
214 2yhs_A FTSY, cell division pro 89.1 0.65 2.2E-05 48.8 7.1 55 475-529 374-435 (503)
215 2dhr_A FTSH; AAA+ protein, hex 88.8 0.56 1.9E-05 49.7 6.5 17 364-380 65-81 (499)
216 1n0w_A DNA repair protein RAD5 88.7 1.5 5.2E-05 41.1 9.1 24 362-385 23-46 (243)
217 3co5_A Putative two-component 88.4 0.34 1.2E-05 41.8 3.8 21 359-379 23-43 (143)
218 1xp8_A RECA protein, recombina 88.4 1.6 5.5E-05 44.2 9.4 37 363-407 74-110 (366)
219 3bgw_A DNAB-like replicative h 87.7 0.75 2.5E-05 48.1 6.6 37 363-407 197-233 (444)
220 3hr8_A Protein RECA; alpha and 87.6 0.84 2.9E-05 46.1 6.7 38 363-408 61-98 (356)
221 2z43_A DNA repair and recombin 87.5 0.88 3E-05 45.3 6.7 23 363-385 107-129 (324)
222 3m6a_A ATP-dependent protease 87.1 0.85 2.9E-05 49.1 6.8 19 362-380 107-125 (543)
223 2yjt_D ATP-dependent RNA helic 86.9 0.12 4.2E-06 46.2 0.0 73 398-483 29-105 (170)
224 2l8b_A Protein TRAI, DNA helic 86.8 1.5 5E-05 39.4 6.9 121 349-516 35-158 (189)
225 3pey_A ATP-dependent RNA helic 86.6 8 0.00028 38.8 13.8 77 398-487 242-322 (395)
226 2v1x_A ATP-dependent DNA helic 86.6 2.8 9.6E-05 45.5 10.6 72 398-482 266-341 (591)
227 1ypw_A Transitional endoplasmi 86.5 0.64 2.2E-05 52.7 5.6 19 362-380 237-255 (806)
228 1r6b_X CLPA protein; AAA+, N-t 86.5 1.6 5.5E-05 49.0 9.0 20 362-381 206-225 (758)
229 3cmu_A Protein RECA, recombina 86.4 1.3 4.4E-05 54.5 8.3 46 362-416 1080-1125(2050)
230 3pxi_A Negative regulator of g 86.3 2.3 8E-05 47.7 10.1 17 365-381 523-539 (758)
231 3fht_A ATP-dependent RNA helic 85.9 2.2 7.7E-05 43.5 9.1 72 399-483 266-341 (412)
232 1hv8_A Putative ATP-dependent 85.4 2.1 7E-05 42.9 8.4 73 398-483 237-313 (367)
233 2eyu_A Twitching motility prot 85.3 0.49 1.7E-05 45.6 3.4 20 361-380 23-42 (261)
234 3iwh_A Rhodanese-like domain p 85.2 0.68 2.3E-05 37.5 3.7 42 567-608 50-91 (103)
235 3cmw_A Protein RECA, recombina 85.1 1.5 5.3E-05 53.1 8.1 120 363-520 1431-1570(1706)
236 1s2m_A Putative ATP-dependent 84.9 2 6.7E-05 43.8 8.0 72 398-482 257-332 (400)
237 1yks_A Genome polyprotein [con 84.7 0.82 2.8E-05 47.8 5.0 68 399-481 177-245 (440)
238 3eme_A Rhodanese-like domain p 84.5 0.76 2.6E-05 37.0 3.7 41 569-609 52-92 (103)
239 3foj_A Uncharacterized protein 84.4 0.75 2.6E-05 36.8 3.6 41 569-609 52-92 (100)
240 3flh_A Uncharacterized protein 84.4 0.77 2.6E-05 38.5 3.8 47 563-609 61-109 (124)
241 3jvv_A Twitching mobility prot 84.0 0.81 2.8E-05 46.3 4.4 18 363-380 123-140 (356)
242 3g5j_A Putative ATP/GTP bindin 84.0 0.73 2.5E-05 38.9 3.6 43 567-609 82-126 (134)
243 1gmx_A GLPE protein; transfera 83.4 1.1 3.7E-05 36.4 4.2 44 566-609 51-95 (108)
244 1wp9_A ATP-dependent RNA helic 82.8 3.4 0.00012 42.9 9.0 75 398-485 360-446 (494)
245 1e9r_A Conjugal transfer prote 82.8 1.1 3.6E-05 46.8 4.9 42 363-412 53-94 (437)
246 3h75_A Periplasmic sugar-bindi 82.7 27 0.00091 34.4 15.3 183 399-599 3-230 (350)
247 2eyq_A TRCF, transcription-rep 82.6 4.3 0.00015 47.8 10.4 79 398-487 811-893 (1151)
248 1q57_A DNA primase/helicase; d 82.0 2 7E-05 45.6 6.9 38 362-406 241-278 (503)
249 1xti_A Probable ATP-dependent 81.8 6.2 0.00021 39.7 10.3 75 398-485 249-327 (391)
250 2db3_A ATP-dependent RNA helic 81.8 2.8 9.7E-05 43.5 7.8 69 401-482 302-374 (434)
251 1wv9_A Rhodanese homolog TT165 81.7 0.7 2.4E-05 36.5 2.3 40 569-609 50-89 (94)
252 3lda_A DNA repair protein RAD5 81.7 1.9 6.6E-05 44.2 6.2 50 356-407 166-220 (400)
253 2jtq_A Phage shock protein E; 81.2 2.1 7.2E-05 32.8 5.0 38 571-609 39-77 (85)
254 1p9r_A General secretion pathw 81.0 2.5 8.4E-05 43.7 6.8 17 363-379 167-183 (418)
255 2xau_A PRE-mRNA-splicing facto 81.0 5.2 0.00018 44.9 10.0 75 399-482 303-393 (773)
256 2j0s_A ATP-dependent RNA helic 80.9 2.9 0.0001 42.7 7.5 71 399-482 276-350 (410)
257 2v6i_A RNA helicase; membrane, 80.9 2.2 7.6E-05 44.3 6.6 67 399-480 171-238 (431)
258 1oyw_A RECQ helicase, ATP-depe 80.8 2.8 9.6E-05 44.7 7.5 72 398-482 235-310 (523)
259 4ag6_A VIRB4 ATPase, type IV s 80.5 1.8 6.1E-05 44.3 5.6 26 362-387 34-59 (392)
260 1tq1_A AT5G66040, senescence-a 79.9 1.4 4.7E-05 37.2 3.7 41 569-609 78-119 (129)
261 1tf7_A KAIC; homohexamer, hexa 79.5 8 0.00027 41.2 10.5 125 362-517 280-417 (525)
262 2oap_1 GSPE-2, type II secreti 79.3 1.7 5.9E-05 46.2 5.1 31 349-379 245-276 (511)
263 3b85_A Phosphate starvation-in 78.9 2.3 7.8E-05 39.3 5.2 33 349-381 8-40 (208)
264 2wv9_A Flavivirin protease NS2 78.9 2.4 8.1E-05 46.8 6.2 68 399-481 410-478 (673)
265 3u4q_B ATP-dependent helicase/ 78.7 2.5 8.5E-05 50.1 6.7 36 574-610 343-379 (1166)
266 3hix_A ALR3790 protein; rhodan 78.3 1.8 6.2E-05 34.9 3.9 40 570-609 49-89 (106)
267 3g1w_A Sugar ABC transporter; 77.7 50 0.0017 31.5 15.9 39 558-598 173-211 (305)
268 3io5_A Recombination and repai 77.1 2.7 9.3E-05 41.4 5.3 41 365-411 30-70 (333)
269 3s99_A Basic membrane lipoprot 76.5 64 0.0022 32.1 16.2 194 399-609 26-241 (356)
270 1u0j_A DNA replication protein 76.5 4.9 0.00017 38.5 6.9 43 336-381 74-122 (267)
271 1ofh_A ATP-dependent HSL prote 75.7 5.4 0.00018 38.8 7.3 19 362-380 49-67 (310)
272 1kgd_A CASK, peripheral plasma 75.6 1.5 5.1E-05 39.3 2.9 19 362-380 4-22 (180)
273 1w36_B RECB, exodeoxyribonucle 75.3 5.2 0.00018 47.3 8.2 58 365-422 18-79 (1180)
274 1qxn_A SUD, sulfide dehydrogen 75.3 2.5 8.5E-05 36.0 4.1 41 569-609 78-119 (137)
275 3nbx_X ATPase RAVA; AAA+ ATPas 75.0 3.2 0.00011 43.9 5.6 28 353-380 31-58 (500)
276 2k0z_A Uncharacterized protein 75.0 3.8 0.00013 33.2 5.0 39 571-609 54-92 (110)
277 3nhv_A BH2092 protein; alpha-b 74.9 1.8 6.3E-05 37.2 3.2 39 571-609 70-110 (144)
278 2bjv_A PSP operon transcriptio 74.8 2.4 8.3E-05 40.5 4.3 19 362-380 28-46 (265)
279 2gza_A Type IV secretion syste 74.5 2 6.7E-05 43.5 3.7 21 359-379 171-191 (361)
280 3hws_A ATP-dependent CLP prote 74.5 4.2 0.00015 40.9 6.3 20 362-381 50-69 (363)
281 3o8b_A HCV NS3 protease/helica 74.3 3.4 0.00012 45.2 5.8 67 398-481 395-461 (666)
282 2r44_A Uncharacterized protein 74.3 1.9 6.4E-05 42.9 3.5 24 357-380 40-63 (331)
283 3a8t_A Adenylate isopentenyltr 74.2 1.6 5.5E-05 43.5 2.9 19 364-382 41-59 (339)
284 3vaa_A Shikimate kinase, SK; s 74.2 1.8 6.2E-05 39.4 3.1 20 362-381 24-43 (199)
285 3k4h_A Putative transcriptiona 73.8 27 0.00094 33.1 11.9 41 557-599 177-217 (292)
286 2fsx_A RV0390, COG0607: rhodan 73.3 3.4 0.00012 35.6 4.5 37 572-608 79-116 (148)
287 1tue_A Replication protein E1; 73.1 3.9 0.00013 37.6 4.9 74 296-388 5-82 (212)
288 1lvg_A Guanylate kinase, GMP k 73.1 2 7E-05 39.1 3.2 20 362-381 3-22 (198)
289 3trf_A Shikimate kinase, SK; a 72.9 2 6.9E-05 38.4 3.0 20 363-382 5-24 (185)
290 3exa_A TRNA delta(2)-isopenten 72.6 1.7 5.9E-05 42.8 2.6 17 365-381 5-21 (322)
291 3iij_A Coilin-interacting nucl 72.5 1.4 4.8E-05 39.3 1.9 21 361-381 9-29 (180)
292 4f4c_A Multidrug resistance pr 72.3 4.7 0.00016 48.2 6.8 41 474-514 1233-1273(1321)
293 3tbk_A RIG-I helicase domain; 72.1 5.2 0.00018 42.5 6.6 76 398-482 388-476 (555)
294 3p32_A Probable GTPase RV1496/ 71.9 41 0.0014 33.5 12.9 18 365-382 81-98 (355)
295 3rc3_A ATP-dependent RNA helic 71.8 7 0.00024 43.0 7.5 73 402-488 323-401 (677)
296 3tau_A Guanylate kinase, GMP k 71.7 2.3 7.7E-05 39.2 3.1 19 362-380 7-25 (208)
297 3foz_A TRNA delta(2)-isopenten 71.5 2.1 7.1E-05 42.1 2.9 17 366-382 13-29 (316)
298 2qmh_A HPR kinase/phosphorylas 71.5 2 6.8E-05 39.3 2.6 19 362-380 33-51 (205)
299 2whx_A Serine protease/ntpase/ 71.4 6.1 0.00021 43.1 7.0 68 399-481 355-423 (618)
300 3eiq_A Eukaryotic initiation f 71.3 2.3 7.8E-05 43.5 3.4 72 398-482 279-354 (414)
301 4a15_A XPD helicase, ATP-depen 71.3 4.4 0.00015 44.2 5.8 87 506-594 374-469 (620)
302 3nwn_A Kinesin-like protein KI 71.1 2.9 9.9E-05 42.1 4.0 24 356-379 96-121 (359)
303 2r8r_A Sensor protein; KDPD, P 71.1 3.4 0.00011 38.6 4.1 23 365-387 8-30 (228)
304 2jlq_A Serine protease subunit 71.0 4.5 0.00015 42.2 5.6 68 399-481 188-256 (451)
305 1qhx_A CPT, protein (chloramph 70.8 2.3 7.8E-05 37.7 2.9 19 363-381 3-21 (178)
306 1kag_A SKI, shikimate kinase I 70.4 2.8 9.7E-05 36.8 3.4 19 363-381 4-22 (173)
307 3ney_A 55 kDa erythrocyte memb 70.4 2.4 8.1E-05 38.8 2.9 20 362-381 18-37 (197)
308 2j41_A Guanylate kinase; GMP, 70.3 2.3 7.9E-05 38.7 2.9 20 361-380 4-23 (207)
309 2z0m_A 337AA long hypothetical 70.0 7.6 0.00026 38.0 6.9 70 398-484 219-292 (337)
310 3tr0_A Guanylate kinase, GMP k 69.8 2.4 8.3E-05 38.5 2.9 19 362-380 6-24 (205)
311 2ze6_A Isopentenyl transferase 69.4 2.5 8.4E-05 40.3 2.9 17 366-382 4-20 (253)
312 1bg2_A Kinesin; motor protein, 69.4 3.5 0.00012 40.9 4.1 25 356-380 69-95 (325)
313 1v8k_A Kinesin-like protein KI 68.9 3.3 0.00011 42.4 3.8 25 356-380 146-172 (410)
314 4akg_A Glutathione S-transfera 68.8 8.3 0.00028 49.2 8.1 49 333-382 890-942 (2695)
315 4etp_A Kinesin-like protein KA 68.8 3.7 0.00013 42.1 4.2 25 356-380 132-158 (403)
316 3ice_A Transcription terminati 68.7 33 0.0011 34.8 11.0 34 349-382 157-193 (422)
317 3dc4_A Kinesin-like protein NO 68.7 3.2 0.00011 41.5 3.7 25 356-380 86-112 (344)
318 2pt7_A CAG-ALFA; ATPase, prote 68.4 2.3 8E-05 42.4 2.6 20 360-379 168-187 (330)
319 1ojl_A Transcriptional regulat 68.1 2.9 9.9E-05 41.1 3.2 19 362-380 24-42 (304)
320 1kht_A Adenylate kinase; phosp 68.1 2.9 0.0001 37.3 3.0 19 363-381 3-21 (192)
321 2y65_A Kinesin, kinesin heavy 68.0 3.8 0.00013 41.3 4.1 25 356-380 76-102 (365)
322 2zr9_A Protein RECA, recombina 67.9 4.1 0.00014 40.9 4.3 37 363-407 61-97 (349)
323 3lw7_A Adenylate kinase relate 67.9 2.3 7.9E-05 37.3 2.2 17 365-381 3-19 (179)
324 3b6u_A Kinesin-like protein KI 67.8 3.8 0.00013 41.4 4.0 24 356-379 93-118 (372)
325 2vvg_A Kinesin-2; motor protei 67.7 3.9 0.00013 41.0 4.1 25 356-380 81-107 (350)
326 2h58_A Kinesin-like protein KI 67.6 4 0.00014 40.6 4.1 25 356-380 72-98 (330)
327 1u94_A RECA protein, recombina 67.6 4.3 0.00015 40.9 4.4 37 363-407 63-99 (356)
328 1t5c_A CENP-E protein, centrom 67.4 3.9 0.00013 41.0 4.0 25 356-380 69-95 (349)
329 2ius_A DNA translocase FTSK; n 67.2 6.4 0.00022 41.6 5.7 26 363-388 167-192 (512)
330 3gbj_A KIF13B protein; kinesin 67.1 3.9 0.00013 41.1 4.0 25 356-380 84-110 (354)
331 4a14_A Kinesin, kinesin-like p 67.1 4.1 0.00014 40.8 4.1 25 356-380 75-101 (344)
332 1y63_A LMAJ004144AAA protein; 66.9 3.3 0.00011 37.1 3.1 20 362-381 9-28 (184)
333 2zfi_A Kinesin-like protein KI 66.9 4.1 0.00014 41.1 4.1 24 356-379 81-106 (366)
334 2nr8_A Kinesin-like protein KI 66.8 4 0.00014 41.0 4.0 24 356-379 95-120 (358)
335 1goj_A Kinesin, kinesin heavy 66.7 3.9 0.00013 41.1 3.8 24 357-380 73-98 (355)
336 3crm_A TRNA delta(2)-isopenten 66.7 3 0.0001 41.3 2.9 17 365-381 7-23 (323)
337 3d1p_A Putative thiosulfate su 66.7 3.4 0.00011 35.1 2.9 38 572-609 90-128 (139)
338 1z6g_A Guanylate kinase; struc 66.6 3.7 0.00013 38.1 3.4 20 361-380 21-40 (218)
339 2qor_A Guanylate kinase; phosp 66.6 3.7 0.00013 37.4 3.4 21 361-381 10-30 (204)
340 1zp6_A Hypothetical protein AT 66.6 2.7 9.4E-05 37.7 2.5 19 362-380 8-26 (191)
341 3ilm_A ALR3790 protein; rhodan 66.5 4.3 0.00015 34.7 3.6 41 569-609 52-93 (141)
342 3a00_A Guanylate kinase, GMP k 66.5 3.6 0.00012 36.9 3.3 17 364-380 2-18 (186)
343 1x88_A Kinesin-like protein KI 66.5 3.8 0.00013 41.3 3.7 24 356-379 80-105 (359)
344 2hhg_A Hypothetical protein RP 66.4 2.9 9.9E-05 35.5 2.5 39 571-609 84-123 (139)
345 3vkg_A Dynein heavy chain, cyt 66.4 9.3 0.00032 49.3 7.8 53 334-389 874-930 (3245)
346 3lre_A Kinesin-like protein KI 66.2 4 0.00014 41.0 3.8 24 356-379 97-122 (355)
347 3nwj_A ATSK2; P loop, shikimat 66.0 4.1 0.00014 38.7 3.7 21 361-381 46-66 (250)
348 4dzz_A Plasmid partitioning pr 65.9 7.4 0.00025 35.1 5.4 31 450-486 55-85 (206)
349 3tb6_A Arabinose metabolism tr 65.8 89 0.0031 29.3 13.8 40 560-599 187-226 (298)
350 3cm0_A Adenylate kinase; ATP-b 65.8 2.6 8.8E-05 37.7 2.1 20 362-381 3-22 (186)
351 3egc_A Putative ribose operon 65.7 45 0.0015 31.6 11.4 36 562-599 176-211 (291)
352 2oca_A DAR protein, ATP-depend 65.5 80 0.0027 32.9 14.2 75 400-486 348-426 (510)
353 3u06_A Protein claret segregat 65.5 4 0.00014 41.9 3.7 25 356-380 130-156 (412)
354 2wbe_C Bipolar kinesin KRP-130 65.2 4.1 0.00014 41.2 3.7 24 356-379 92-117 (373)
355 2heh_A KIF2C protein; kinesin, 65.2 4.3 0.00015 41.3 3.8 25 356-380 126-152 (387)
356 1ex7_A Guanylate kinase; subst 65.0 3.1 0.00011 37.6 2.5 16 364-379 2-17 (186)
357 2cvh_A DNA repair and recombin 65.0 6.8 0.00023 35.8 5.0 23 363-385 20-42 (220)
358 2va8_A SSO2462, SKI2-type heli 64.9 18 0.00061 40.1 9.2 76 399-483 252-363 (715)
359 3cob_A Kinesin heavy chain-lik 64.8 3.8 0.00013 41.4 3.3 25 356-380 71-97 (369)
360 3t0q_A AGR253WP; kinesin, alph 64.8 3.5 0.00012 41.4 3.0 25 356-380 77-103 (349)
361 2ewv_A Twitching motility prot 64.6 3 0.0001 42.4 2.5 19 362-380 135-153 (372)
362 4a2p_A RIG-I, retinoic acid in 64.4 8.5 0.00029 40.9 6.3 77 398-483 389-478 (556)
363 3d3q_A TRNA delta(2)-isopenten 64.2 3.5 0.00012 41.1 2.9 18 365-382 9-26 (340)
364 2iut_A DNA translocase FTSK; n 63.9 8 0.00027 41.4 5.7 28 363-390 214-241 (574)
365 2owm_A Nckin3-434, related to 63.8 5 0.00017 41.6 4.1 25 356-380 128-154 (443)
366 1rj9_A FTSY, signal recognitio 63.7 7.3 0.00025 38.2 5.1 19 363-381 102-120 (304)
367 1f9v_A Kinesin-like protein KA 63.7 3.6 0.00012 41.3 2.8 25 356-380 76-102 (347)
368 1ry6_A Internal kinesin; kines 63.2 4.6 0.00016 40.6 3.6 19 362-380 82-102 (360)
369 3bfn_A Kinesin-like protein KI 63.2 3.9 0.00013 41.5 3.1 24 357-380 91-116 (388)
370 1vee_A Proline-rich protein fa 63.1 4.7 0.00016 34.0 3.1 37 572-608 73-110 (134)
371 4eun_A Thermoresistant glucoki 63.0 4.3 0.00015 36.8 3.1 20 362-381 28-47 (200)
372 2ykg_A Probable ATP-dependent 62.9 5.6 0.00019 43.9 4.6 79 398-485 397-488 (696)
373 3fmp_B ATP-dependent RNA helic 62.8 1.6 5.3E-05 46.1 0.0 70 399-481 333-406 (479)
374 3fho_A ATP-dependent RNA helic 62.7 2.8 9.7E-05 44.5 2.1 73 398-483 356-432 (508)
375 3kb2_A SPBC2 prophage-derived 62.6 4.2 0.00014 35.6 2.9 17 365-381 3-19 (173)
376 1f2t_A RAD50 ABC-ATPase; DNA d 62.4 5.3 0.00018 34.5 3.4 15 366-380 26-40 (149)
377 2z83_A Helicase/nucleoside tri 62.3 4.3 0.00015 42.5 3.3 68 399-481 190-258 (459)
378 3eph_A TRNA isopentenyltransfe 62.2 4.5 0.00015 41.3 3.3 17 366-382 5-21 (409)
379 3hgt_A HDA1 complex subunit 3; 62.2 11 0.00039 37.0 6.1 55 555-609 106-161 (328)
380 1s96_A Guanylate kinase, GMP k 62.0 4.6 0.00016 37.5 3.1 21 360-380 13-33 (219)
381 1nij_A Hypothetical protein YJ 62.0 5.9 0.0002 39.1 4.1 37 476-515 151-187 (318)
382 1znw_A Guanylate kinase, GMP k 62.0 4.6 0.00016 36.9 3.1 22 359-380 16-37 (207)
383 3dmq_A RNA polymerase-associat 61.9 8.9 0.00031 44.2 6.2 77 398-486 502-584 (968)
384 1knq_A Gluconate kinase; ALFA/ 61.6 3.9 0.00013 36.1 2.5 19 363-381 8-26 (175)
385 1ly1_A Polynucleotide kinase; 61.5 4.5 0.00015 35.6 2.9 17 365-381 4-20 (181)
386 4a2q_A RIG-I, retinoic acid in 61.5 8.9 0.0003 43.2 6.0 77 398-483 630-719 (797)
387 4gp7_A Metallophosphoesterase; 61.2 3.3 0.00011 36.6 1.9 19 363-381 9-27 (171)
388 1z5z_A Helicase of the SNF2/RA 61.0 20 0.0007 34.2 7.7 96 371-486 92-193 (271)
389 2c9o_A RUVB-like 1; hexameric 60.9 4.3 0.00015 42.4 3.0 19 363-381 63-81 (456)
390 4gl2_A Interferon-induced heli 60.7 6.5 0.00022 43.4 4.6 74 399-481 400-487 (699)
391 2c95_A Adenylate kinase 1; tra 60.6 5.3 0.00018 35.8 3.2 20 362-381 8-27 (196)
392 3g85_A Transcriptional regulat 60.3 36 0.0012 32.2 9.6 40 558-599 174-213 (289)
393 2zj8_A DNA helicase, putative 60.3 15 0.00051 40.8 7.5 74 399-481 237-343 (720)
394 1zuh_A Shikimate kinase; alpha 60.2 4.9 0.00017 35.1 2.9 19 364-382 8-26 (168)
395 4fcw_A Chaperone protein CLPB; 60.1 5.5 0.00019 38.8 3.5 18 364-381 48-65 (311)
396 3h1t_A Type I site-specific re 60.0 19 0.00066 38.7 8.2 79 398-485 438-526 (590)
397 3cwq_A Para family chromosome 60.0 64 0.0022 29.1 10.7 19 367-385 5-23 (209)
398 3oiy_A Reverse gyrase helicase 59.9 11 0.00037 38.5 5.9 50 563-612 54-106 (414)
399 3l6u_A ABC-type sugar transpor 59.8 1.1E+02 0.0039 28.5 14.0 40 557-598 180-219 (293)
400 2r2a_A Uncharacterized protein 59.8 5.6 0.00019 36.3 3.3 19 366-384 8-26 (199)
401 1tev_A UMP-CMP kinase; ploop, 59.8 4.4 0.00015 36.2 2.5 19 363-381 3-21 (196)
402 2yvu_A Probable adenylyl-sulfa 59.7 7.2 0.00025 34.7 4.0 20 363-382 13-32 (186)
403 3kke_A LACI family transcripti 59.7 73 0.0025 30.3 11.8 27 573-599 196-222 (303)
404 1ixz_A ATP-dependent metallopr 59.5 4.9 0.00017 38.0 2.9 17 364-380 50-66 (254)
405 1zu4_A FTSY; GTPase, signal re 59.1 6.9 0.00024 38.7 4.0 20 363-382 105-124 (320)
406 3b9q_A Chloroplast SRP recepto 59.1 7.1 0.00024 38.2 4.1 19 363-381 100-118 (302)
407 2rep_A Kinesin-like protein KI 58.9 4.7 0.00016 40.8 2.8 24 356-379 107-132 (376)
408 3tg1_B Dual specificity protei 58.8 6.5 0.00022 34.2 3.4 37 573-609 93-138 (158)
409 3uie_A Adenylyl-sulfate kinase 58.3 5 0.00017 36.4 2.6 20 362-381 24-43 (200)
410 3hcw_A Maltose operon transcri 58.3 1.2E+02 0.0042 28.5 13.1 43 557-599 174-217 (295)
411 2bdt_A BH3686; alpha-beta prot 58.1 5.6 0.00019 35.6 2.9 18 364-381 3-20 (189)
412 4a2w_A RIG-I, retinoic acid in 57.9 13 0.00046 42.6 6.7 79 398-485 630-721 (936)
413 1g8p_A Magnesium-chelatase 38 57.9 6.7 0.00023 38.9 3.7 19 362-380 44-62 (350)
414 3t61_A Gluconokinase; PSI-biol 57.9 5.6 0.00019 36.0 2.9 18 364-381 19-36 (202)
415 3lnc_A Guanylate kinase, GMP k 57.7 4.5 0.00015 37.7 2.3 19 362-380 26-44 (231)
416 1via_A Shikimate kinase; struc 57.7 6.3 0.00022 34.7 3.2 18 365-382 6-23 (175)
417 1xjc_A MOBB protein homolog; s 57.5 11 0.00038 33.3 4.7 15 366-380 7-21 (169)
418 2bwj_A Adenylate kinase 5; pho 57.5 5.9 0.0002 35.6 3.0 20 362-381 11-30 (199)
419 3fkq_A NTRC-like two-domain pr 57.5 13 0.00045 37.5 5.9 26 456-485 243-268 (373)
420 2r62_A Cell division protease 57.4 3.1 0.0001 39.8 1.1 19 363-381 44-62 (268)
421 3tqc_A Pantothenate kinase; bi 57.2 18 0.00061 35.7 6.6 23 366-390 95-117 (321)
422 3kta_A Chromosome segregation 57.2 6.1 0.00021 35.0 3.0 22 366-389 29-50 (182)
423 2v54_A DTMP kinase, thymidylat 57.2 4.7 0.00016 36.5 2.3 20 362-381 3-22 (204)
424 1ak2_A Adenylate kinase isoenz 57.2 5.6 0.00019 37.1 2.9 20 363-382 16-35 (233)
425 1ye8_A Protein THEP1, hypothet 57.1 6 0.0002 35.3 2.9 16 365-380 2-17 (178)
426 1in4_A RUVB, holliday junction 57.1 5.9 0.0002 39.3 3.2 18 364-381 52-69 (334)
427 3mwy_W Chromo domain-containin 57.0 1.4E+02 0.0049 33.2 15.0 113 398-527 571-696 (800)
428 4a74_A DNA repair and recombin 56.3 10 0.00035 34.8 4.5 20 362-381 24-43 (231)
429 2plr_A DTMP kinase, probable t 56.2 5.1 0.00018 36.4 2.4 20 362-381 3-22 (213)
430 3pxg_A Negative regulator of g 56.2 7.8 0.00027 40.6 4.0 20 362-381 200-219 (468)
431 1urh_A 3-mercaptopyruvate sulf 56.1 16 0.00056 34.9 6.2 39 571-609 228-267 (280)
432 2rhm_A Putative kinase; P-loop 55.9 5.6 0.00019 35.5 2.5 19 363-381 5-23 (193)
433 1v5w_A DMC1, meiotic recombina 55.9 8.1 0.00028 38.6 4.0 44 363-408 122-165 (343)
434 2iyv_A Shikimate kinase, SK; t 55.5 7.6 0.00026 34.4 3.4 18 364-381 3-20 (184)
435 3qk7_A Transcriptional regulat 55.5 1.4E+02 0.0047 28.1 17.4 42 556-599 171-212 (294)
436 3sr0_A Adenylate kinase; phosp 55.4 7.8 0.00027 35.5 3.4 19 365-383 2-20 (206)
437 1aky_A Adenylate kinase; ATP:A 55.3 6.9 0.00024 36.0 3.1 19 363-381 4-22 (220)
438 1iy2_A ATP-dependent metallopr 55.1 6.3 0.00022 37.9 2.9 17 364-380 74-90 (278)
439 1zak_A Adenylate kinase; ATP:A 54.9 7.5 0.00026 35.8 3.3 19 364-382 6-24 (222)
440 3mm4_A Histidine kinase homolo 54.8 1.2E+02 0.004 27.1 13.4 129 362-517 19-161 (206)
441 1c9k_A COBU, adenosylcobinamid 54.6 8.3 0.00028 34.5 3.3 33 366-410 2-34 (180)
442 1m7g_A Adenylylsulfate kinase; 54.6 7.2 0.00025 35.7 3.1 31 350-381 13-43 (211)
443 1zd8_A GTP:AMP phosphotransfer 54.5 6.8 0.00023 36.3 2.9 19 363-381 7-25 (227)
444 2i3b_A HCR-ntpase, human cance 54.4 8.1 0.00028 34.9 3.3 41 474-517 103-145 (189)
445 3qf7_A RAD50; ABC-ATPase, ATPa 54.4 7.1 0.00024 39.4 3.3 16 366-381 26-41 (365)
446 2og2_A Putative signal recogni 54.2 9.3 0.00032 38.4 4.0 19 363-381 157-175 (359)
447 1e6c_A Shikimate kinase; phosp 53.9 8 0.00027 33.8 3.2 18 364-381 3-20 (173)
448 3fb4_A Adenylate kinase; psych 53.9 8.4 0.00029 35.2 3.4 18 365-382 2-19 (216)
449 3k1j_A LON protease, ATP-depen 53.8 11 0.00036 41.0 4.7 23 358-380 55-77 (604)
450 1gvn_B Zeta; postsegregational 53.6 6.8 0.00023 38.0 2.8 18 364-381 34-51 (287)
451 3c8u_A Fructokinase; YP_612366 53.5 6.5 0.00022 35.9 2.6 18 363-380 22-39 (208)
452 1cke_A CK, MSSA, protein (cyti 53.4 7.2 0.00025 35.9 2.9 18 364-381 6-23 (227)
453 1tf5_A Preprotein translocase 53.4 21 0.00071 40.0 6.9 54 399-456 432-487 (844)
454 3qks_A DNA double-strand break 53.4 8.7 0.0003 35.0 3.4 15 366-380 26-40 (203)
455 1sky_E F1-ATPase, F1-ATP synth 53.4 48 0.0016 34.5 9.3 26 361-386 149-174 (473)
456 1nks_A Adenylate kinase; therm 53.3 7.2 0.00025 34.7 2.8 17 365-381 3-19 (194)
457 1qf9_A UMP/CMP kinase, protein 53.0 7.3 0.00025 34.6 2.8 17 365-381 8-24 (194)
458 3dl0_A Adenylate kinase; phosp 52.7 7.6 0.00026 35.5 2.9 17 365-381 2-18 (216)
459 2pez_A Bifunctional 3'-phospho 52.6 7.1 0.00024 34.5 2.6 20 362-381 4-23 (179)
460 3umf_A Adenylate kinase; rossm 52.5 9.4 0.00032 35.3 3.5 19 364-382 30-48 (217)
461 3gv0_A Transcriptional regulat 52.1 39 0.0014 32.0 8.2 38 560-599 176-213 (288)
462 1uar_A Rhodanese; sulfurtransf 52.0 14 0.00046 35.6 4.8 46 564-609 222-271 (285)
463 2cdn_A Adenylate kinase; phosp 51.8 8.7 0.0003 34.7 3.1 18 364-381 21-38 (201)
464 2jaq_A Deoxyguanosine kinase; 51.0 8.4 0.00029 34.6 2.9 17 365-381 2-18 (205)
465 1jr3_D DNA polymerase III, del 51.0 68 0.0023 31.4 10.0 43 474-517 74-117 (343)
466 1t3k_A Arath CDC25, dual-speci 51.0 18 0.0006 31.2 4.9 44 566-609 78-131 (152)
467 3auy_A DNA double-strand break 50.9 8.9 0.0003 38.7 3.3 22 366-389 28-49 (371)
468 3kjx_A Transcriptional regulat 50.8 99 0.0034 30.1 11.2 39 559-599 234-272 (344)
469 1t6n_A Probable ATP-dependent 50.5 18 0.0006 33.0 5.1 38 574-611 83-125 (220)
470 3h5o_A Transcriptional regulat 50.2 1.1E+02 0.0037 29.6 11.4 39 559-599 226-264 (339)
471 3asz_A Uridine kinase; cytidin 50.2 7.7 0.00026 35.3 2.5 18 363-380 6-23 (211)
472 3oaa_A ATP synthase subunit al 50.0 59 0.002 34.0 9.3 26 355-380 151-179 (513)
473 1ukz_A Uridylate kinase; trans 50.0 8.9 0.00031 34.6 2.9 16 365-380 17-32 (203)
474 3crv_A XPD/RAD3 related DNA he 50.0 47 0.0016 35.4 9.1 21 572-592 392-412 (551)
475 2qt1_A Nicotinamide riboside k 50.0 8.7 0.0003 34.9 2.8 18 363-380 21-38 (207)
476 4f4c_A Multidrug resistance pr 49.8 16 0.00054 43.8 5.7 41 474-514 570-610 (1321)
477 1g41_A Heat shock protein HSLU 49.8 9.1 0.00031 39.7 3.2 18 363-380 50-67 (444)
478 1jjv_A Dephospho-COA kinase; P 49.7 9.1 0.00031 34.7 2.9 15 366-380 5-19 (206)
479 2i1q_A DNA repair and recombin 49.7 11 0.00037 37.1 3.7 24 363-386 98-121 (322)
480 1e0c_A Rhodanese, sulfurtransf 49.6 13 0.00043 35.6 4.0 39 571-609 221-260 (271)
481 2if2_A Dephospho-COA kinase; a 49.5 8.9 0.0003 34.6 2.8 17 365-381 3-19 (204)
482 2wwf_A Thymidilate kinase, put 49.4 9.5 0.00032 34.6 3.0 20 362-381 9-28 (212)
483 2p6r_A Afuhel308 helicase; pro 49.2 16 0.00055 40.4 5.3 75 399-482 242-346 (702)
484 3be4_A Adenylate kinase; malar 49.2 9.5 0.00032 35.0 3.0 19 363-381 5-23 (217)
485 2vli_A Antibiotic resistance p 49.1 7.9 0.00027 34.2 2.3 19 363-381 5-23 (183)
486 2r9v_A ATP synthase subunit al 48.8 45 0.0015 34.9 8.2 31 355-385 164-197 (515)
487 2pt5_A Shikimate kinase, SK; a 48.8 9.9 0.00034 33.0 2.9 17 365-381 2-18 (168)
488 2v9p_A Replication protein E1; 48.8 9.6 0.00033 37.3 3.0 19 362-380 125-143 (305)
489 2bbw_A Adenylate kinase 4, AK4 48.7 9.4 0.00032 35.8 2.9 19 363-381 27-45 (246)
490 1yrb_A ATP(GTP)binding protein 48.7 1.6E+02 0.0056 27.0 12.5 17 365-381 16-32 (262)
491 2f1r_A Molybdopterin-guanine d 48.7 5.5 0.00019 35.3 1.2 16 366-381 5-20 (171)
492 3f9v_A Minichromosome maintena 48.6 7.1 0.00024 42.3 2.3 15 365-379 329-343 (595)
493 2ce2_X GTPase HRAS; signaling 48.5 78 0.0027 26.3 8.9 15 365-379 5-19 (166)
494 1nn5_A Similar to deoxythymidy 48.5 9.3 0.00032 34.7 2.8 20 362-381 8-27 (215)
495 2oxc_A Probable ATP-dependent 48.5 19 0.00065 33.2 5.0 41 572-612 91-136 (230)
496 3huu_A Transcription regulator 48.5 1.3E+02 0.0046 28.4 11.6 27 573-599 201-227 (305)
497 3jy6_A Transcriptional regulat 48.4 1.7E+02 0.0058 27.1 19.5 179 399-599 7-206 (276)
498 3cmw_A Protein RECA, recombina 48.2 17 0.00057 44.3 5.5 38 363-408 34-71 (1706)
499 1e4v_A Adenylate kinase; trans 47.8 9.7 0.00033 34.8 2.8 19 366-384 3-21 (214)
500 4e22_A Cytidylate kinase; P-lo 47.7 10 0.00036 35.8 3.1 23 362-384 26-48 (252)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-48 Score=417.91 Aligned_cols=297 Identities=37% Similarity=0.617 Sum_probs=274.9
Q ss_pred CeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCC
Q psy12410 313 GIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQP 392 (615)
Q Consensus 313 ~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~ 392 (615)
.+.+.|..+|.|+.+|.+++|++.++++|...||..|||+|.++||.+++|+|++++||||||||++|++|++.+++...
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcc
Q psy12410 393 PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVT 472 (615)
Q Consensus 393 ~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 472 (615)
......++++|||+||++||.|+++.+.+++...++.+++++||.....+...+..+++|+|+||++|.+++.... .
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~ 199 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF---I 199 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---C
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---c
Confidence 4334568899999999999999999999999988899999999999988888888899999999999999998653 5
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhc--CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEE
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV--RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQH 550 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~ 550 (615)
.+..+.+|||||||+|++++|...+..|+..+ ++.+|+|+||||+++.+..++..++.+|+.+.++........+.+.
T Consensus 200 ~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~ 279 (434)
T 2db3_A 200 TFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT 279 (434)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEE
T ss_pred ccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceE
Confidence 68899999999999999999999999999885 6789999999999999999999999999999998877778889999
Q ss_pred EEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 551 VIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 551 ~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+..+....+...|..++.... .++||||+++..|+.|+..|...|+.+..+||++++.+|+.
T Consensus 280 ~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 280 IYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp EEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 999999999999999998763 35999999999999999999999999999999999999975
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=377.69 Aligned_cols=298 Identities=38% Similarity=0.644 Sum_probs=266.9
Q ss_pred eEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCC
Q psy12410 314 IRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP 393 (615)
Q Consensus 314 i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~ 393 (615)
+.+.|..+|.++.+|.+++|++.++++|...||..|+|+|.++|+.++.++|+|+++|||+|||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999998865421
Q ss_pred C-------------CCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH
Q psy12410 394 L-------------EETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM 460 (615)
Q Consensus 394 ~-------------~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l 460 (615)
. ....++++|||+||++||.|+++.+..++...++.+++++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998889999999999999888888888899999999999
Q ss_pred HHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc--CC--CCcEEEEeccCChHHHHHHHHHcCCCEEEE
Q psy12410 461 IDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV--RP--DRQTVMFSATFPRQMEALARRILNKPIEIQ 536 (615)
Q Consensus 461 ~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~--~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~ 536 (615)
..++.... ..+..+++|||||||++++++|...+..++... ++ .+|+++||||+++.+..++..++.+|+.+.
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99987653 568889999999999999999999999998853 32 679999999999999999999999999888
Q ss_pred ECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 537 VGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 537 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+.........+.+.+..+....+...+..++......+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 877777778899999999989999999999998777889999999999999999999999999999999999999875
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3e-41 Score=332.43 Aligned_cols=238 Identities=47% Similarity=0.876 Sum_probs=219.8
Q ss_pred CCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhH
Q psy12410 299 MTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTV 378 (615)
Q Consensus 299 ~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~ 378 (615)
++.+++..++.... |.+.|...|.|+.+|.+++|++.+++.|...||..|+++|.++|+.++.|+++++++|||+|||+
T Consensus 3 ~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 3 RTAQEVETYRRSKE-ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ---CHHHHHHHHHT-EEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCHHHHHHHHhcCc-eEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 45678899998876 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChH
Q psy12410 379 AFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPG 458 (615)
Q Consensus 379 ~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~ 458 (615)
+|++|++.++...+......++++|||+||++||.|+++.+..++...++.+.+++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998765444556889999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEEC
Q psy12410 459 RMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538 (615)
Q Consensus 459 ~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 538 (615)
+|.+++.... ..+.++.+|||||||++++++|...+..++..+++++|+|+||||+++.+..++..++.+|+.|.++
T Consensus 162 ~l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 162 RLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999997653 5688999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Cc
Q psy12410 539 GR 540 (615)
Q Consensus 539 ~~ 540 (615)
..
T Consensus 239 ~~ 240 (242)
T 3fe2_A 239 AL 240 (242)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.2e-41 Score=360.24 Aligned_cols=287 Identities=26% Similarity=0.461 Sum_probs=257.0
Q ss_pred CCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 319 KGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 319 ~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
...+.+..+|.+++|++.+++.|...||..|+|+|.++|+.++.|+++++++|||+|||++|++|++.++... ..
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~ 104 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VR 104 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SC
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cC
Confidence 3345567789999999999999999999999999999999999999999999999999999999999876422 34
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
++++|||+||++||.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.... ..+..++
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~---~~~~~~~ 181 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIK 181 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---ccHhhee
Confidence 7789999999999999999999999888999999999999988888888889999999999999988652 5578899
Q ss_pred EEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChh-
Q psy12410 479 YIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEE- 557 (615)
Q Consensus 479 ~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~- 557 (615)
+|||||||++++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.+.........+.+.+..+...
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 261 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH
Confidence 9999999999999999999999999999999999999999999999999999999888777777777888888777654
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 262 ~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (410)
T 2j0s_A 262 WKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 317 (410)
T ss_dssp HHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHH
Confidence 4777777777765 3568999999999999999999999999999999999999875
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.3e-39 Score=342.17 Aligned_cols=283 Identities=29% Similarity=0.477 Sum_probs=249.9
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCe
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPM 401 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 401 (615)
+.+..+|.+++|++.+++.|...||..|+|+|.++++.++.++++++++|||+|||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456689999999999999999999999999999999999999999999999999999999999886432 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
+|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+.|..++.... ..+..+++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEE
Confidence 9999999999999999999999988999999999998887777777789999999999999887643 5578899999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHH
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 561 (615)
|||||++++.+|...+..++..+++..|+++||||++..+..++..++..|..+.+.. ......+.+.+..+....+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGGHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhhHHH
Confidence 9999999988888999999999988999999999999999999999999998765543 345567888888888888888
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 248 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 299 (400)
T 1s2m_A 248 CLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 299 (400)
T ss_dssp HHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHH
T ss_pred HHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHH
Confidence 888887765 4579999999999999999999999999999999999999875
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=346.11 Aligned_cols=286 Identities=26% Similarity=0.443 Sum_probs=252.7
Q ss_pred CCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCC
Q psy12410 320 GCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDG 399 (615)
Q Consensus 320 ~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 399 (615)
..+..+.+|.++++++.+++.|...|+..|+++|.++|+.++.|+++|+++|||+|||++|++|++.++... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345667889999999999999999999999999999999999999999999999999999999999887432 357
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
+++|||+||++||.|+++.+..++...++.+..++|+.........+. .+++|+|+||++|.+++.... ..+..+.
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~ 185 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 185 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCC
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCc
Confidence 789999999999999999999999988999999999998888877776 568999999999999988753 5578899
Q ss_pred EEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChh-
Q psy12410 479 YIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEE- 557 (615)
Q Consensus 479 ~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~- 557 (615)
+|||||||++.+++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.+.........+.+.+..+...
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 9999999999999999999999999999999999999999999999999999999888877777777788877776544
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+...+..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 266 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~ 321 (414)
T 3eiq_A 266 WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDV 321 (414)
T ss_dssp THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHH
Confidence 4777777777765 4568999999999999999999999999999999999999875
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-38 Score=336.20 Aligned_cols=280 Identities=27% Similarity=0.488 Sum_probs=247.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.+|.+++|++.+++.|...||..|+|+|.++|+.++.++++++++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
+||++|+.|+++.+..+.... ++.+.+++|+.........+..+ ++|+|+||++|..++.... ..+..+.+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vViD 159 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 159 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEEe
Confidence 999999999999999998776 78999999999887777666654 7999999999999887643 457899999999
Q ss_pred ccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcc-cccCCeEEEEEecChhHHHH
Q psy12410 484 EADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRS-VVCKEVEQHVIVLDEEQKML 561 (615)
Q Consensus 484 Eah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~ 561 (615)
|||++.+ .++...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.... .....+.+.+..+....+..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 239 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH
Confidence 9999987 478888999999988899999999999999999999999999887766543 34467888888888888888
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 240 ~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 291 (391)
T 1xti_A 240 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLS 291 (391)
T ss_dssp HHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 888888765 5679999999999999999999999999999999999999875
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-38 Score=333.54 Aligned_cols=278 Identities=27% Similarity=0.428 Sum_probs=241.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCe
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPM 401 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 401 (615)
...+|.+++|++.+++.|...|+..|+|+|.++|+.++.+ +++|+++|||+|||++|+++++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4578999999999999999999999999999999999988 9999999999999999999999886432 35778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
+|||+||++|+.|+++.+..++...++.+..++++...... ..+++|+|+||+.|...+... ...+..+++||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iI 150 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFV 150 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcC---CcccccCCEEE
Confidence 99999999999999999999998888888888877543322 235899999999999988764 35688899999
Q ss_pred Ecccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-hhHH
Q psy12410 482 LDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-EEQK 559 (615)
Q Consensus 482 vDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~k 559 (615)
|||||++.+ .++...+..++..+++..|+|+||||+++.+..++..++.++..+.+.........+.+.+..+. ...+
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHH
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHH
Confidence 999999887 67889999999999999999999999999999999999999988887777777778888877774 4456
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...+..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 231 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (395)
T 3pey_A 231 FDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDR 284 (395)
T ss_dssp HHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred HHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 66666665544 5679999999999999999999999999999999999999875
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.5e-38 Score=336.58 Aligned_cols=283 Identities=23% Similarity=0.378 Sum_probs=244.3
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 321 CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 321 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
.+.++.+|.+++|++.+++.|...||..|+|+|.++|+.++.+ +++|+++|||+|||++|++|++.++... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456789999999999999999999999999999999999987 9999999999999999999999887543 35
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
++++|||+||++||.|+++.+..+...+ ++.+.+..++....... ..+++|+|+||++|..++.... ...+..+
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK--FIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSC--SSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcC--CcChhhC
Confidence 6789999999999999999999998764 57778887776544321 3357999999999999886532 3557889
Q ss_pred cEEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh
Q psy12410 478 TYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE 556 (615)
Q Consensus 478 ~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~ 556 (615)
.+|||||||++++ .++...+..++..+++.+|+|+||||+++.+..++..++.++..+.+.........+.+.+..+..
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999886 678899999999999999999999999999999999999999988887777777888888877754
Q ss_pred -hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 557 -EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 557 -~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..+...+..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 250 ~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 307 (412)
T 3fht_A 250 RDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 307 (412)
T ss_dssp HHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHH
Confidence 56777777777654 4569999999999999999999999999999999999999975
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.8e-39 Score=340.75 Aligned_cols=285 Identities=25% Similarity=0.443 Sum_probs=190.3
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCC
Q psy12410 321 CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGP 400 (615)
Q Consensus 321 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 400 (615)
...++.+|.+++|++.+++.|...|+..|+|+|.++++.++.++++++++|||+|||++|++|++.++... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45667889999999999999999999999999999999999999999999999999999999999886432 3577
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEE
Q psy12410 401 MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480 (615)
Q Consensus 401 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~l 480 (615)
++|||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||+.|...+.... ..+..+++|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 99999999999999999999999888999999999988777665554 58999999999999887642 457889999
Q ss_pred EEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhH-H
Q psy12410 481 VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQ-K 559 (615)
Q Consensus 481 VvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~-k 559 (615)
||||||++.+++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.+.........+.+.+..+.... +
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 999999999999999999999999999999999999999999999999999998888776666667777666555443 5
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
...+..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..+
T Consensus 247 ~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 301 (394)
T 1fuu_A 247 YECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTI 301 (394)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHH
Confidence 55666666543 45689999999999999999999999999999999999998753
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=349.42 Aligned_cols=281 Identities=23% Similarity=0.389 Sum_probs=178.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCe
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPM 401 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 401 (615)
++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|++||||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876433 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEE
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~l 480 (615)
+|||+||++||.|++..+..+.... ++.+.+..++....... ..+++|+||||++|.+++.... ...+.++.+|
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~i 239 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVF 239 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcC--CcCcccCCEE
Confidence 9999999999999999999988754 56777777766443221 2347999999999999986532 3567899999
Q ss_pred EEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh-hH
Q psy12410 481 VLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE-EQ 558 (615)
Q Consensus 481 VvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~-~~ 558 (615)
||||||++++ .+|...+..++..++..+|+|+||||+++.+..++..++.+|..+.+.........+.+.++.+.. ..
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH
Confidence 9999999986 678889999999999999999999999999999999999999988888777777778887777654 45
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 559 KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 559 k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..+
T Consensus 320 ~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 320 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHH
Confidence 666666666544 45689999999999999999999999999999999999999764
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-37 Score=324.73 Aligned_cols=274 Identities=31% Similarity=0.541 Sum_probs=243.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG-RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
..+|.+++|++.+++.|...|+..|+|+|.++|+.++.+ +++++.+|||+|||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 799999999999999999999987643 3477899
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||+.|...+.... ..+..+++||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 99999999999999999999888899999999998877766665 58999999999999887643 457889999999
Q ss_pred cccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHH
Q psy12410 484 EADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKL 563 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 563 (615)
|||.+.+++|...+..++..+++..++|++|||+++.+..++..++.++..+.... ...+.+.+..+....+...+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876555432 24677888888888888888
Q ss_pred HHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 564 LELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 564 ~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..++. ...+++||||+++..|+.++..|...|+.+..+||++++.+|..
T Consensus 231 ~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 279 (367)
T 1hv8_A 231 CRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREK 279 (367)
T ss_dssp HHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHH
T ss_pred HHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHH
Confidence 88887 35678999999999999999999999999999999999999874
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-37 Score=345.77 Aligned_cols=288 Identities=27% Similarity=0.418 Sum_probs=234.7
Q ss_pred ccccccccC----CCHHHHHHHHHCCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCC
Q psy12410 324 PIKTWAQCG----VSKKILDALKKQNYEKPTPIQAQAIPAIM--SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET 397 (615)
Q Consensus 324 ~~~~~~~~~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 397 (615)
+..+|.++. |++.++++|...||..|+|+|.++|+.++ .++++|++||||+|||++|++|++.++..... ...
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-ccc
Confidence 334455553 99999999999999999999999999999 78999999999999999999999999876532 123
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhh----cCcEEEEEEcCCChhHHHHHHhc-CCcEEEEChHHHHHHHHhcCCCcc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKS----LGLRVVCVYGGTGISEQISELKR-GAEIIVCTPGRMIDMLAANSGRVT 472 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~ 472 (615)
.++++|||+||++||.|++..+..++.. ..+.+..++||.....+...+.. +++|+||||++|.+++.... ..
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~ 171 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NK 171 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HH
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--cc
Confidence 4679999999999999999999998743 34678889999988888777754 69999999999999887531 24
Q ss_pred cCCCccEEEEccccccccCCcHHHHHHHHHhcC-------CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCc----c
Q psy12410 473 NLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR-------PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGR----S 541 (615)
Q Consensus 473 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-------~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~ 541 (615)
.+..+.+|||||||+|++++|...+..|+..++ +.+|+|+||||+++.+..++..++.+|..+.+... .
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 578899999999999999999999998887663 37899999999999999999999999876665432 2
Q ss_pred cccCCeEEEEEecCh-hHHH----HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC---CCcEEEEcCCCChhhhh
Q psy12410 542 VVCKEVEQHVIVLDE-EQKM----LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP---CLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 542 ~~~~~i~~~~~~~~~-~~k~----~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~---g~~~~~lhg~~~~~eR~ 613 (615)
.....+.+.+..... ..+. ..+...+......+++||||+++..|+.|+..|... |+.+..+||+|++.+|.
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~ 331 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 331 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHH
Confidence 234566776665543 2222 233334444455779999999999999999999876 99999999999999997
Q ss_pred c
Q psy12410 614 W 614 (615)
Q Consensus 614 ~ 614 (615)
.
T Consensus 332 ~ 332 (579)
T 3sqw_A 332 S 332 (579)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.2e-38 Score=310.53 Aligned_cols=234 Identities=41% Similarity=0.700 Sum_probs=200.2
Q ss_pred eEecCCCCCC--ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcC
Q psy12410 314 IRVKGKGCPR--PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQ 391 (615)
Q Consensus 314 i~~~~~~~p~--~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~ 391 (615)
+.+.|...|. ++.+|.+++|++.++++|...||..|+++|.++|+.++.++++++++|||+|||++|++|++.++...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 6677888887 99999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCC----CCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhc
Q psy12410 392 PPL----EETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAAN 467 (615)
Q Consensus 392 ~~~----~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~ 467 (615)
... ....++++|||+||++||.|+++.+..++...++.+++++||.....+...+..+++|+|+||++|..++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 311 1234679999999999999999999999988889999999999988888888888999999999999998765
Q ss_pred CCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc--CC--CCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccc
Q psy12410 468 SGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV--RP--DRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVV 543 (615)
Q Consensus 468 ~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~--~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~ 543 (615)
. ..+..+.+|||||||++++++|...+..++..+ +. .+|+|+||||+++.+..++..++.+|+.+.++.....
T Consensus 169 ~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 169 K---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp S---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred C---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 3 568899999999999999999999999999954 33 6899999999999999999999999999998877776
Q ss_pred cCCeEEE
Q psy12410 544 CKEVEQH 550 (615)
Q Consensus 544 ~~~i~~~ 550 (615)
..+|.|.
T Consensus 246 ~~~i~q~ 252 (253)
T 1wrb_A 246 SDSIKQE 252 (253)
T ss_dssp -------
T ss_pred cCCceec
Confidence 6777765
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6e-37 Score=339.50 Aligned_cols=279 Identities=28% Similarity=0.434 Sum_probs=229.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIM--SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
|++.++..|...||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++.++..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999876532 1234678999999999
Q ss_pred HHHHHHHHHHHhhhhc----CcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 411 LCMQIGKEAKKFTKSL----GLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 411 La~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
||.|++..+..++... .+.+..++|+.....+...+. .+++|+||||++|.+++.... ...+..+.+||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeCH
Confidence 9999999999986532 467888999998888777764 469999999999999887531 235788999999999
Q ss_pred cccccCCcHHHHHHHHHhc-------CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCc----ccccCCeEEEEEec
Q psy12410 486 DRMFDMGFEPQVMRIIDNV-------RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGR----SVVCKEVEQHVIVL 554 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~-------~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~~~~~~i~~~~~~~ 554 (615)
|+|++++|...+..|+..+ .+.+|+|+||||+++.+..++..++.++..+.+... ......+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9999999999999887765 337899999999999999999999998876665322 22345566666655
Q ss_pred Ch-hHHH----HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC---CCcEEEEcCCCChhhhhc
Q psy12410 555 DE-EQKM----LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP---CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 555 ~~-~~k~----~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~---g~~~~~lhg~~~~~eR~~ 614 (615)
.. ..+. ..+...+......+++||||+++..|+.++..|... |+.+..+||+|++.+|..
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 43 2222 233334444456779999999999999999999876 999999999999999975
No 16
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=301.61 Aligned_cols=216 Identities=42% Similarity=0.755 Sum_probs=187.7
Q ss_pred CCCCCCccccccc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCC-CC
Q psy12410 318 GKGCPRPIKTWAQ-CGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP-LE 395 (615)
Q Consensus 318 ~~~~p~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~-~~ 395 (615)
+...|.|+.+|.+ +++++.+++.|...||..|+++|.++|+.++.|+|+++++|||+|||++|++|++.++..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567999999999 799999999999999999999999999999999999999999999999999999998864321 11
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCC
Q psy12410 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475 (615)
Q Consensus 396 ~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 475 (615)
...++++|||+||++||.|+++.+..+. ..++.+++++||.....+...+..+++|+|+||++|..++.... ..+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~ 166 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---CCCT
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cCcc
Confidence 2357899999999999999999999986 35789999999998888888888899999999999999887653 5688
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEE
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 537 (615)
.+.+|||||||++++++|...+..++..+++++|+|+||||+++.+..++..++.+|+.|.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999988764
No 17
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=302.61 Aligned_cols=210 Identities=39% Similarity=0.673 Sum_probs=193.4
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCe
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPM 401 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 401 (615)
+.++.+|.+++|++.+++.|...||..|+++|.++|+.++.|+++++++|||+|||++|++|++.++... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 4567889999999999999999999999999999999999999999999999999999999999988764 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
+|||+||++||.|+++.+..++...++.+.+++||.....+...+..+++|+|+||++|...+.... ...+..+.+||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lV 191 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLV 191 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEE
Confidence 9999999999999999999999988999999999999888888888889999999999999887632 24578899999
Q ss_pred EccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEEC
Q psy12410 482 LDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538 (615)
Q Consensus 482 vDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 538 (615)
|||||++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999987654
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=299.84 Aligned_cols=232 Identities=33% Similarity=0.585 Sum_probs=198.7
Q ss_pred HHHHHHhhhcCeEecCCCCCCcccccccc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhH
Q psy12410 303 EVEKYKEELEGIRVKGKGCPRPIKTWAQC----GVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTV 378 (615)
Q Consensus 303 ~~~~~r~~~~~i~~~~~~~p~~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~ 378 (615)
++..++.... +.+.|...|.|+.+|.++ ++++.+++.|...||..|+++|.++|+.++.|+++++++|||+|||+
T Consensus 3 ~~~~~~~~~~-i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~ 81 (245)
T 3dkp_A 3 KINFLRNKHK-IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 81 (245)
T ss_dssp HHHHHHHHTT-EEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHH
T ss_pred hHHHHHHhCc-eEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHH
Confidence 4566777765 999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH-HHhcCCcEEEECh
Q psy12410 379 AFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS-ELKRGAEIIVCTP 457 (615)
Q Consensus 379 ~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~Iiv~Tp 457 (615)
+|++|++.++.... ..++++|||+||++||.|+++.+..++...++.+.+++|+........ ....+++|+|+||
T Consensus 82 ~~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 82 AFSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTP 157 (245)
T ss_dssp HHHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECH
T ss_pred HHHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECH
Confidence 99999999885431 357789999999999999999999999988888888777643322211 1234589999999
Q ss_pred HHHHHHHHhcCCCcccCCCccEEEEcccccccc---CCcHHHHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCCCE
Q psy12410 458 GRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD---MGFEPQVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNKPI 533 (615)
Q Consensus 458 ~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~---~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~p~ 533 (615)
++|..++..... ...+.++.+|||||||++++ .+|...+..++..+ .+..|+++||||+++.+..++..++.+|+
T Consensus 158 ~~l~~~l~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 158 NRLIYLLKQDPP-GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHHHHHSSSC-SCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHhCCC-CcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE
Confidence 999999876421 25688999999999999987 57899999998776 45789999999999999999999999999
Q ss_pred EEEECCc
Q psy12410 534 EIQVGGR 540 (615)
Q Consensus 534 ~i~~~~~ 540 (615)
.+.++..
T Consensus 237 ~i~~~~~ 243 (245)
T 3dkp_A 237 SVSIGAR 243 (245)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9988754
No 19
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=308.27 Aligned_cols=215 Identities=27% Similarity=0.479 Sum_probs=187.8
Q ss_pred eEecCCCCCC---ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 314 IRVKGKGCPR---PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 314 i~~~~~~~p~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
+.+.+...+. ++.+|.+++|++.+++.|..+||..||++|.++||.++.| +|+|++||||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 4555544444 4678999999999999999999999999999999999987 9999999999999999999999987
Q ss_pred hcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhc
Q psy12410 389 LDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAAN 467 (615)
Q Consensus 389 ~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~ 467 (615)
... ..++++|||+||++||.|++..+..++..+ ++.+.+++|+....... ..+++|+||||++|.+++...
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 543 457899999999999999999999998765 68888888887654332 345899999999999999653
Q ss_pred CCCcccCCCccEEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEEC
Q psy12410 468 SGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538 (615)
Q Consensus 468 ~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 538 (615)
....+..+.+|||||||+|++ .+|...+..|+..+++.+|+|+||||+++.+..++..++.+|+.|.+.
T Consensus 229 --~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 --KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp --CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred --CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 235678999999999999997 789999999999999999999999999999999999999999988764
No 20
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.4e-36 Score=297.98 Aligned_cols=213 Identities=29% Similarity=0.521 Sum_probs=179.5
Q ss_pred CCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCC
Q psy12410 318 GKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET 397 (615)
Q Consensus 318 ~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 397 (615)
....|.++.+|.+++|++.+++.|...||..|+++|.++|+.++.++++|+++|||+|||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567788999999999999999999999999999999999999999999999999999999999999887432 3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
.++++|||+||++||.|+++.+..++...++.+..++|+.....+...+..+ ++|+|+||++|.+++.... ..+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCccc
Confidence 4678999999999999999999999988889999999998877777777666 8999999999999987642 55788
Q ss_pred ccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEEC
Q psy12410 477 VTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538 (615)
Q Consensus 477 ~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 538 (615)
+.+|||||||++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.|.+.
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999987654
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=291.41 Aligned_cols=229 Identities=34% Similarity=0.527 Sum_probs=197.6
Q ss_pred HHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 301 PEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 301 ~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
.+++..++..+.. ..+.++.+|.++++++.+++.|...|+..|+++|.++++.++.|+++++++|||+|||++|
T Consensus 6 ~~~~~~~~~~~~~------~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 6 RESISRLMQNYEK------INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHTTTT------CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HhHHHHHHhcccc------CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 3455566665542 2356788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH
Q psy12410 381 VLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM 460 (615)
Q Consensus 381 ~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l 460 (615)
++|++.++..... ....++++|||+||++||.|+++.+..++...++.+.+++|+.........+ .+++|+|+||++|
T Consensus 80 ~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l 157 (236)
T 2pl3_A 80 LVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRL 157 (236)
T ss_dssp HHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHH
T ss_pred HHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHH
Confidence 9999998865321 1234788999999999999999999999988889999999998877766555 4699999999999
Q ss_pred HHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECC
Q psy12410 461 IDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGG 539 (615)
Q Consensus 461 ~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 539 (615)
...+.... ...+..+.+|||||||++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.+.+
T Consensus 158 ~~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 158 LQHMDETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHHCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHHhcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99887642 245788999999999999999999999999999999999999999999999999999999999887654
No 22
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.5e-36 Score=292.46 Aligned_cols=212 Identities=27% Similarity=0.471 Sum_probs=183.6
Q ss_pred cCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCC
Q psy12410 317 KGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEE 396 (615)
Q Consensus 317 ~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~ 396 (615)
.+...|.+..+|.+++|++.+++.|...||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 345667888999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCC
Q psy12410 397 TDGPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 475 (615)
Q Consensus 397 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 475 (615)
..++++|||+||++||.|+++.+..+.... ++.+.+++||.........+ .+++|+|+||++|..++.... ..+.
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~---~~~~ 165 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY---LNPG 165 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS---SCGG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC---cccc
Confidence 346889999999999999999999998765 78999999998877665554 469999999999999887542 4578
Q ss_pred CccEEEEccccccccCC-cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEE
Q psy12410 476 RVTYIVLDEADRMFDMG-FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 537 (615)
.+.+|||||||++++++ |...+..++..++..+|+|+||||+++.+..++..++.+|+.+.+
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 89999999999999987 999999999999989999999999999999999999999987654
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-35 Score=283.82 Aligned_cols=202 Identities=33% Similarity=0.624 Sum_probs=185.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
.+|.+++|++.+++.|...||..|+++|.++++.++.++++++++|||+|||++|++|++.++... ..++++|||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886432 356789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
+||++|+.|+++.+..++... ++.+.+++|+.........+..+++|+|+||++|...+.... ..+..+.+|||||
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~lViDE 154 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLDE 154 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC---cCcccCCEEEEEC
Confidence 999999999999999998877 789999999998888877777889999999999999887642 5678899999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEE
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEI 535 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i 535 (615)
||++++.+|...+..++..+++.+|+|+||||+++.+..++..++.+|+.|
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999899999999999999999999999999865
No 24
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.8e-36 Score=289.83 Aligned_cols=214 Identities=29% Similarity=0.531 Sum_probs=183.0
Q ss_pred CCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 319 KGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 319 ~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
...|+++.+|.+++|++.+++.|...|+..|+++|.++++.++.++++++++|||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3457788999999999999999999999999999999999999999999999999999999999999887433 35
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
++++|||+||++||.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|...+... ...+..+.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR---RFRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC---CcchhhCc
Confidence 77999999999999999999999998889999999999877766555544 899999999999988764 25578899
Q ss_pred EEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcc
Q psy12410 479 YIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRS 541 (615)
Q Consensus 479 ~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 541 (615)
+|||||||++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.+....
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 999999999999999999999999999999999999999999999999999999988766543
No 25
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-36 Score=291.96 Aligned_cols=208 Identities=32% Similarity=0.544 Sum_probs=185.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
|+.+|.+++|++.+++.|...|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 35679999999999999999999999999999999999999999999999999999999999887532 3478899
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhc----CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccE
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSL----GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 479 (615)
||+||++||.|+++.+..++... ++.+.+++|+.........+..+++|+|+||++|..++.... ..+..+.+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~ 153 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHI 153 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC---CCcCcceE
Confidence 99999999999999999998876 788899999887665554555578999999999999887642 55788999
Q ss_pred EEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECC
Q psy12410 480 IVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGG 539 (615)
Q Consensus 480 lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 539 (615)
|||||||++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.+..
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999999999876653
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-36 Score=328.37 Aligned_cols=282 Identities=26% Similarity=0.367 Sum_probs=203.7
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCC
Q psy12410 321 CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETD 398 (615)
Q Consensus 321 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 398 (615)
.|..+..|...++++.+++.|...|+..|+++|.++|+.++.+ +++|+++|||||||++|+++++.++... ..
T Consensus 114 ~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~ 188 (508)
T 3fho_A 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VP 188 (508)
T ss_dssp -------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CC
T ss_pred cccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CC
Confidence 4555666777889999999999999999999999999999988 9999999999999999999999887543 34
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCcc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 478 (615)
++++|||+||++|+.|+++.+..++...++.+...+++..... ...+++|+|+||+.|...+.... ..+..++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~ 261 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ---LDARDIK 261 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC---SCCTTCC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC---ccccCCC
Confidence 6789999999999999999999998877777766666543222 22358999999999999887653 4578899
Q ss_pred EEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecC-h
Q psy12410 479 YIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLD-E 556 (615)
Q Consensus 479 ~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~ 556 (615)
+|||||||++.+ .++...+..++..+++..|+|++|||+++.+..++..++.++..+.+.........+.+.+..+. .
T Consensus 262 lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 262 VFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp EEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C
T ss_pred EEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch
Confidence 999999999887 67999999999999999999999999999999999999999988877766666666777766664 4
Q ss_pred hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 557 EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 557 ~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
..+...+..++... ..+++||||+++.+|+.++..|...|+.+.++||+|++.+|+.+
T Consensus 342 ~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~i 399 (508)
T 3fho_A 342 EHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAI 399 (508)
T ss_dssp HHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGG
T ss_pred HHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 55666666666554 56799999999999999999999999999999999999998753
No 27
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=7.4e-35 Score=279.62 Aligned_cols=204 Identities=43% Similarity=0.729 Sum_probs=185.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
+|.+++|++.+++.|...|+..|+++|.++++.+++++++++++|||+|||++|++|++.++.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999876432 123578999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
||++|+.|+++.+..++.. +.+.+++|+.........+..+++|+|+||+.|..++.... ..+..+.+|||||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV---LDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS---SCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC---cchhhceEEEEEChh
Confidence 9999999999999999764 67889999998888877888889999999999999887642 567889999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEE
Q psy12410 487 RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 537 (615)
++++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999987765
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-34 Score=298.61 Aligned_cols=257 Identities=27% Similarity=0.504 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
|++.|.+.|..+|+..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998864 56799999999999
Q ss_pred HHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC
Q psy12410 413 MQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG 492 (615)
Q Consensus 413 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~ 492 (615)
.|+++.+..++...++.+..++|+.........+.. ++|+|+||+.|...+.... ..+..+++|||||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS---CCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC---cchhhCcEEEEEChHHhhccc
Confidence 999999999998888999999999888777666554 8999999999999887642 457889999999999999999
Q ss_pred cHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCC
Q psy12410 493 FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQD 572 (615)
Q Consensus 493 ~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~ 572 (615)
+...+..++..++...++++||||+++.+..++..++.++..+... .....+.+.+..+....+. .+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 219 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRE-NK 219 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHT-CC
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHh-CC
Confidence 9999999999999999999999999999999999999988766432 3345566666666544332 2234433 35
Q ss_pred CCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 573 QGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 573 ~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+++||||+++..|+.++..|. .+..+||++++.+|..
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNR 257 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHH
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHH
Confidence 6789999999999999999886 6889999999999875
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.8e-35 Score=281.97 Aligned_cols=211 Identities=30% Similarity=0.547 Sum_probs=182.7
Q ss_pred CCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCC
Q psy12410 318 GKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEET 397 (615)
Q Consensus 318 ~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 397 (615)
+...+....+|.+++|++.+++.|...||..|+++|.++++.++.++++++++|||+|||++|++|++..+... .
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~ 80 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----T 80 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----T
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----C
Confidence 34445556779999999999999999999999999999999999999999999999999999999999886432 3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhc-CcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCC
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSL-GLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLR 475 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 475 (615)
.++++|||+||++|+.|+++.+..+.... ++.+.+++|+.....+...+..+ ++|+|+||+.|..++.... ..+.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~ 157 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLK 157 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCT
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcc
Confidence 45789999999999999999999998776 78999999999887777776654 7999999999999887642 5678
Q ss_pred CccEEEEcccccccc-CCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEE
Q psy12410 476 RVTYIVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQ 536 (615)
Q Consensus 476 ~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~ 536 (615)
.+++|||||||++++ .+|...+..++..+++.+|+|+||||+++.+..++..++.+|+.|.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999999986 5788999999999988999999999999999999999999998765
No 30
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=288.71 Aligned_cols=204 Identities=37% Similarity=0.548 Sum_probs=181.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 327 TWAQCG--VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 327 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+|.+++ +++.+++.|...||..|+++|.++|+.++.++|+|++||||||||++|++|++..+..... ....++++||
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEEE
Confidence 466666 9999999999999999999999999999999999999999999999999999998876421 1234788999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
|+||++||.|++..+..++...++.+.+++|+.........+..+++|+||||++|...+.... ...+..+.+|||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lViDE 209 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVIDE 209 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEECS
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEEcC
Confidence 9999999999999999999998999999999999988888888889999999999999887642 24578899999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCE
Q psy12410 485 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPI 533 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~ 533 (615)
||++++++|...+..|+..++..+|+|+||||+++.+..+++.++.++.
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999987653
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-34 Score=317.42 Aligned_cols=272 Identities=19% Similarity=0.227 Sum_probs=217.7
Q ss_pred Ccccccc--ccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCC
Q psy12410 323 RPIKTWA--QCGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDG 399 (615)
Q Consensus 323 ~~~~~~~--~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 399 (615)
.....|. ++++++.+...|.. .||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~ 84 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------D 84 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------S
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------C
Confidence 3344554 47889999999998 59999999999999999999999999999999999999999742 4
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH---H---hcCCcEEEEChHHHH------HHHHhc
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE---L---KRGAEIIVCTPGRMI------DMLAAN 467 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l---~~~~~Iiv~Tp~~l~------~~l~~~ 467 (615)
+.+|||+|+++|+.|++..+..+ ++.+.+++|+......... + ..+++|+|+||++|. ..+..
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~- 159 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK- 159 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-
Confidence 68999999999999999998887 7889999998876655322 2 245899999999874 23322
Q ss_pred CCCcccCCCccEEEEccccccccCC--cHHHHHH--HHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccc
Q psy12410 468 SGRVTNLRRVTYIVLDEADRMFDMG--FEPQVMR--IIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVV 543 (615)
Q Consensus 468 ~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~--i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~ 543 (615)
...+..+.+|||||||++.+|| |.+.+.. ++....+++|+|+||||+++.+...+..++..+..+.+. ....
T Consensus 160 ---~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~ 235 (591)
T 2v1x_A 160 ---AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFN 235 (591)
T ss_dssp ---HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCC
T ss_pred ---hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCC
Confidence 2457789999999999999988 7776655 455556789999999999999888888887654322222 1334
Q ss_pred cCCeEEEEEecC--hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 544 CKEVEQHVIVLD--EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 544 ~~~i~~~~~~~~--~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..++.+.+.... ...+...|..++.....++++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 236 r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~ 308 (591)
T 2v1x_A 236 RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308 (591)
T ss_dssp CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHH
Confidence 456666555443 34566677777766556789999999999999999999999999999999999999975
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4e-34 Score=304.55 Aligned_cols=247 Identities=20% Similarity=0.251 Sum_probs=198.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH
Q psy12410 337 ILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG 416 (615)
Q Consensus 337 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 416 (615)
+.+.+.+.....|+|+|.++|+.++.|+|+|+++|||+|||++|+++++..+ ..++++|||+||++||.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHHH
Confidence 3444554323389999999999999999999999999999999999988776 34789999999999999999
Q ss_pred HHHHHhhhhcCcEEEEEEcCCCh---hHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc---
Q psy12410 417 KEAKKFTKSLGLRVVCVYGGTGI---SEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF--- 489 (615)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~--- 489 (615)
+.+..++. .++.+..++|+... ..+...+..+ ++|+||||++|.+.+.. ..+..+.+|||||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhcc
Confidence 99999988 78999999999988 5566777777 99999999999887763 557789999999998654
Q ss_pred -------c-CCcHHH-HHHHHHhcC-----------CCCcEEEEecc-CChHHH-HHHHHHcCCCEEEEECCcccccCCe
Q psy12410 490 -------D-MGFEPQ-VMRIIDNVR-----------PDRQTVMFSAT-FPRQME-ALARRILNKPIEIQVGGRSVVCKEV 547 (615)
Q Consensus 490 -------~-~~~~~~-~~~i~~~~~-----------~~~q~l~~SAT-~~~~~~-~~~~~~~~~p~~i~~~~~~~~~~~i 547 (615)
+ ++|... +..++..++ +.+|+|+|||| ++..+. .+...++. +.+.........+
T Consensus 156 ~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i 231 (414)
T 3oiy_A 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNI 231 (414)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSE
T ss_pred chhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccc
Confidence 3 778888 788888876 88999999999 555444 33444433 2233344455678
Q ss_pred EEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEE-EEcCC
Q psy12410 548 EQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFL-PLPAG 606 (615)
Q Consensus 548 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~-~lhg~ 606 (615)
.+.+..++. ...|..++... ++++||||+++..|+.|+..|...|+.+. .+||+
T Consensus 232 ~~~~~~~~~---~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 232 THVRISSRS---KEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp EEEEESSCC---HHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred hheeeccCH---HHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 888776643 34455666553 47899999999999999999999999998 99995
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-32 Score=299.53 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=206.5
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 326 KTWAQCGVSKKILDALKK-QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 326 ~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
.+|.+++|++.+...|.. .||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. .+.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 79999999999999999999999999999999999999999843 357999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhc-CCcEEEEChHHHHHHHHhcCCCcccCCCccEE
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~l 480 (615)
|+|+++|+.|++..+..+ ++.+.+++|+....... ..+.. ..+|+|+||++|....... ......+.+|
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~~~~v 143 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWNPVLL 143 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSCEEEE
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCCCCEE
Confidence 999999999999888875 78888888887765443 23333 4899999999995321111 1234688999
Q ss_pred EEccccccccCC--cHHHHHHH---HHhcCCCCcEEEEeccCChHHHHHHHHHc--CCCEEEEECCcccccCCeEEEEEe
Q psy12410 481 VLDEADRMFDMG--FEPQVMRI---IDNVRPDRQTVMFSATFPRQMEALARRIL--NKPIEIQVGGRSVVCKEVEQHVIV 553 (615)
Q Consensus 481 VvDEah~~~~~~--~~~~~~~i---~~~~~~~~q~l~~SAT~~~~~~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~ 553 (615)
||||||++.+|| |.+.+..+ ... .++.++|+||||+++.+...+..++ .+|..+ +. .....++...+..
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~~l~~~v~~ 219 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS--SFDRPNIRYMLME 219 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHH-CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC--CCCCTTEEEEEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHh-CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC--CCCCCceEEEEEe
Confidence 999999999887 66655544 333 3578999999999988765444443 455433 32 2233455544433
Q ss_pred cChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 554 LDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 554 ~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...+...+..++... .++++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 220 --~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~ 277 (523)
T 1oyw_A 220 --KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRAD 277 (523)
T ss_dssp --CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred --CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHH
Confidence 344556677777654 4668999999999999999999999999999999999999975
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.3e-33 Score=309.34 Aligned_cols=307 Identities=18% Similarity=0.190 Sum_probs=227.7
Q ss_pred ccCCccccccccChhhhcCCHHHHHHHHhhhcCeEe-cCCCCCCccccccccCCCHHHHHHHH--------HCCCCCCCH
Q psy12410 281 EYLPFRKDFYVEVPEIARMTPEEVEKYKEELEGIRV-KGKGCPRPIKTWAQCGVSKKILDALK--------KQNYEKPTP 351 (615)
Q Consensus 281 ~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~~i~~-~~~~~p~~~~~~~~~~l~~~l~~~l~--------~~~~~~~~~ 351 (615)
.|.++-..++...+.+..++.+++.....++. ..+ .|.. + .+.+.+++. ..|+ .|||
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~-~~~~~g~~-------l-----d~~l~ea~a~vrea~~r~lG~-~pt~ 86 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFK-ERLEKGAT-------T-----DDLLVEAFAVVREASRRVTGM-FPFK 86 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHH-HHHHTTCC-------H-----HHHHHHHHHHHHHHHHHHHSC-CCCH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHH-HHHhcCCC-------h-----HHHHHHHHHHHHHHHHHHcCC-CCcH
Confidence 35566666777788999999999977766654 222 2221 1 222333332 4699 9999
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEE
Q psy12410 352 IQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVV 431 (615)
Q Consensus 352 ~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 431 (615)
+|..++|.++.|+ |+.++||+|||++|++|++.+.+ .++.|+||+||++||.|+++++..++..+|+.++
T Consensus 87 VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 87 VQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9999999999999 99999999999999999986543 2567999999999999999999999999999999
Q ss_pred EEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc-cCC--------------
Q psy12410 432 CVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF-DMG-------------- 492 (615)
Q Consensus 432 ~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~-~~~-------------- 492 (615)
+++||.+.... ....+++|+||||++| .++|..+-. ....++.+.++||||||.|+ +++
T Consensus 157 ~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 157 LNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp ECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 99999876544 3334699999999999 677665421 12457899999999999987 764
Q ss_pred -cHHHHHHHHHhcC---------CCCcEE-----------------EEeccCCh---HHHHHH--HHHcC---CCEE---
Q psy12410 493 -FEPQVMRIIDNVR---------PDRQTV-----------------MFSATFPR---QMEALA--RRILN---KPIE--- 534 (615)
Q Consensus 493 -~~~~~~~i~~~~~---------~~~q~l-----------------~~SAT~~~---~~~~~~--~~~~~---~p~~--- 534 (615)
|...+..|+..++ +.+|++ +||||++. .+..++ ..++. +++.
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 7789999999997 368888 89999874 333332 22332 1221
Q ss_pred --EEEC-----------------------------CcccccCCeE-----------------------------------
Q psy12410 535 --IQVG-----------------------------GRSVVCKEVE----------------------------------- 548 (615)
Q Consensus 535 --i~~~-----------------------------~~~~~~~~i~----------------------------------- 548 (615)
+.+. ....+...|.
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~ 394 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT 394 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE
Confidence 0110 0000000010
Q ss_pred ------------EEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 549 ------------QHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 549 ------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
+.++.+....|+..|+.++... ..+.++||||+|+..++.|+..|...|+++..|||++.+.+|+
T Consensus 395 IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ 472 (844)
T 1tf5_A 395 IPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQ 472 (844)
T ss_dssp CCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHH
T ss_pred ecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHH
Confidence 1134456778888888877643 3467899999999999999999999999999999999988885
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=321.46 Aligned_cols=264 Identities=19% Similarity=0.178 Sum_probs=206.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|..++++..+...+...++..|+|+|.++|+.++.|+++|++||||||||++|++|++..+. .++++|||+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEc
Confidence 456666666666666666778999999999999999999999999999999999999998873 477999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 407 PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 407 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
||++||.|++..+..++. .+++++|+.... .+++|+|+||++|.+++.... ..+..+.+|||||||
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVH 300 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETGG
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhhh
Confidence 999999999999998865 567788887633 348999999999999988753 447789999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCcEEEEeccCChH--HHHHHHHHcCCCEEEEECCcccccCCeEEEEEecCh--------
Q psy12410 487 RMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQ--MEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDE-------- 556 (615)
Q Consensus 487 ~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~--~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~-------- 556 (615)
+|.+++|...+..++..+++.+|+|+||||+++. +..++..+...|+.+...... ...+.+++.....
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeec
Confidence 9999999999999999999999999999999874 445666666777665544322 2223332221100
Q ss_pred -----------------------------------------------hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHH
Q psy12410 557 -----------------------------------------------EQKMLKLLELLGIYQDQGSVIVFVDKQENADSL 589 (615)
Q Consensus 557 -----------------------------------------------~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l 589 (615)
......++..+... ..+++||||+++..|+.+
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHH
Confidence 22233344444332 356899999999999999
Q ss_pred HHHhhcCCCc---------------------------------------EEEEcCCCChhhhhcC
Q psy12410 590 LFHSMDPCLE---------------------------------------FLPLPAGITRFIWQWA 615 (615)
Q Consensus 590 ~~~L~~~g~~---------------------------------------~~~lhg~~~~~eR~~v 615 (615)
+..|...|+. +..+||+|++.+|+.|
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 9999775443 7899999999999753
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.98 E-value=1.4e-31 Score=304.33 Aligned_cols=267 Identities=22% Similarity=0.313 Sum_probs=207.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 325 IKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 325 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
..+|.+++|++.+.+.+...||..|+|+|.++|+. +..++++|++||||||||++|.++++.++... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78899999999999999999999999887532 67999
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
|++|+++||.|++..++.+ ...|+.+..++|+....... + .+++|+||||++|..++.... ..+..+++||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiD 152 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLD 152 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEEC
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEe
Confidence 9999999999999999644 44589999999987655432 2 358999999999999888642 347889999999
Q ss_pred cccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEE------------E
Q psy12410 484 EADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQH------------V 551 (615)
Q Consensus 484 Eah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~------------~ 551 (615)
|||.+.+.++...+..++..++ +.|+|+||||+++ ...++.++. .++ +...... ..+... +
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~ 225 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRP---VPLIEGVIYPERKKKEYNV 225 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCS---SCEEEEEEEECSSTTEEEE
T ss_pred chhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCC---CCceEEEEecCCcccceee
Confidence 9999988888989988888776 7999999999986 356666553 322 1111111 111111 1
Q ss_pred EecC--------hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCC--------------------------
Q psy12410 552 IVLD--------EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPC-------------------------- 597 (615)
Q Consensus 552 ~~~~--------~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g-------------------------- 597 (615)
.... .......+..++ ..++++||||+++..|+.++..|....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 226 IFKDNTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EETTSCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred ecCcchhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 1111 133333444444 356899999999999999999997642
Q ss_pred ----------CcEEEEcCCCChhhhhcC
Q psy12410 598 ----------LEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 598 ----------~~~~~lhg~~~~~eR~~v 615 (615)
+.+..+||+|++.+|..|
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 248999999999999753
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=5.6e-32 Score=307.51 Aligned_cols=266 Identities=22% Similarity=0.252 Sum_probs=206.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEE
Q psy12410 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIM 405 (615)
Q Consensus 327 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 405 (615)
+|.+++|++.+.+.+...||..|+|+|.++|+. +..++++|++||||||||++|.++++.++... ++++|||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887632 6789999
Q ss_pred cCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 406 SPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 406 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
+|+++||.|++..+..+.. +|+.++.++|+....... ..+++|+||||++|..++.... ..+..+++||||||
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGS---SWIKDVKILVADEI 147 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTC---TTGGGEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcCh---hhhhcCCEEEEECC
Confidence 9999999999999965544 589999999977654331 2358999999999998887642 34788999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEE------ecC----
Q psy12410 486 DRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI------VLD---- 555 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~~~---- 555 (615)
|.+.++++...+..++..++.+.|+|+||||+++ ...+..++ ..++ +..... +..+...+. ...
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~~ 221 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSID 221 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCC---SSEEEEEEEETTEEEETTSCEE
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCC---CCcceEEEEeCCeeeccccchh
Confidence 9999888999999999988778999999999986 35565544 3222 111111 111111111 111
Q ss_pred -hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC------------------C---------------CcEE
Q psy12410 556 -EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP------------------C---------------LEFL 601 (615)
Q Consensus 556 -~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~------------------g---------------~~~~ 601 (615)
.......+..++. .++++||||+++..|+.++..|... + +.+.
T Consensus 222 ~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 222 RFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp ECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 1222333344333 4689999999999999999998753 1 2489
Q ss_pred EEcCCCChhhhhcC
Q psy12410 602 PLPAGITRFIWQWA 615 (615)
Q Consensus 602 ~lhg~~~~~eR~~v 615 (615)
.+||+|++.+|..|
T Consensus 299 ~~h~~l~~~~R~~v 312 (720)
T 2zj8_A 299 FHHAGLGRDERVLV 312 (720)
T ss_dssp EECTTSCHHHHHHH
T ss_pred eecCCCCHHHHHHH
Confidence 99999999999753
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=2.1e-31 Score=311.35 Aligned_cols=239 Identities=20% Similarity=0.251 Sum_probs=197.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|| .|+|+|.++|+.++.|+|+|++||||||||++|+++++..+ ..++++|||+||++||.|++..+..|+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 79999999999999999999999999999998888888776 347899999999999999999999987
Q ss_pred hhcCcEEEEEEcCCCh---hHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc----------
Q psy12410 424 KSLGLRVVCVYGGTGI---SEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF---------- 489 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~---------- 489 (615)
..++.+++++||.+. ..+...+..+ ++|+||||++|.+++.. ..+.++.+|||||||+++
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhhh
Confidence 678999999999988 6677778777 99999999999887763 567889999999997654
Q ss_pred c-CCcHHH-HHHHHHhcC-----------CCCcEEEEecc-CChHHH-HHHHHHcCCCEEEEECCcccccCCeEEEEEec
Q psy12410 490 D-MGFEPQ-VMRIIDNVR-----------PDRQTVMFSAT-FPRQME-ALARRILNKPIEIQVGGRSVVCKEVEQHVIVL 554 (615)
Q Consensus 490 ~-~~~~~~-~~~i~~~~~-----------~~~q~l~~SAT-~~~~~~-~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~ 554 (615)
+ +||... +..++..++ +++|+|+|||| +|..+. .+...++. +.+........++.+.++.+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec
Confidence 4 888888 889998887 88999999999 555444 23333433 34444455667888888777
Q ss_pred ChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEE-EEcCC
Q psy12410 555 DEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFL-PLPAG 606 (615)
Q Consensus 555 ~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~-~lhg~ 606 (615)
+ +...|..+|... ++++||||+++..|+.|+..|...|+.+. .+||+
T Consensus 296 ~---k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~ 343 (1104)
T 4ddu_A 296 R---SKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 343 (1104)
T ss_dssp C---CHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred C---HHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence 4 444556666653 47999999999999999999999999998 99993
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=1.8e-30 Score=286.91 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=134.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+...|+|+|.++|+.++.++++|+++|||+|||++|++|++..+...+ ...++++|||+||++|+.|++..+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999999999999887643 12377899999999999999999999999
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH-HHHHh
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM-RIIDN 503 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-~i~~~ 503 (615)
..++.+..++|+.........+..+++|+||||++|...+.... ...+..+.+|||||||++.++++...+. .++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88999999999997777767777779999999999999987643 2268889999999999999877544442 22222
Q ss_pred -c---CCCCcEEEEeccCC
Q psy12410 504 -V---RPDRQTVMFSATFP 518 (615)
Q Consensus 504 -~---~~~~q~l~~SAT~~ 518 (615)
+ .+..|+|+||||++
T Consensus 159 ~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHCC---CCEEEEEESCCC
T ss_pred hhcccCCCCeEEEEeCCcc
Confidence 1 45689999999995
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=4.6e-32 Score=307.38 Aligned_cols=265 Identities=19% Similarity=0.241 Sum_probs=200.8
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEE
Q psy12410 327 TWAQCG--VSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAII 404 (615)
Q Consensus 327 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 404 (615)
+|.+++ |++.+.+.+...||..|+|+|.++++.++.++++|++||||||||++|.++++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988742 568999
Q ss_pred EcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcc
Q psy12410 405 MSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDE 484 (615)
Q Consensus 405 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDE 484 (615)
++|+++||.|++..++.+. ..|+.+..++|+....... ..+++|+||||++|..++.... ..+..+++|||||
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE 146 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDE 146 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEee
Confidence 9999999999999996543 4588999999987654431 2358999999999999887642 3478899999999
Q ss_pred ccccccCCcHHHHHHHHHhc---CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEE------ecC
Q psy12410 485 ADRMFDMGFEPQVMRIIDNV---RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVI------VLD 555 (615)
Q Consensus 485 ah~~~~~~~~~~~~~i~~~~---~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~~~ 555 (615)
||.+.++++...+..++..+ +++.|+|+||||+++ ...++.++ ..++ +...... ..+...+. ...
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWRP---VPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCCS---SCEEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCCC---ccceEEEeeCCeeeccC
Confidence 99999888888887776655 678999999999986 46666544 4332 2211111 11222111 011
Q ss_pred hh-------HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC------------------------------CC
Q psy12410 556 EE-------QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP------------------------------CL 598 (615)
Q Consensus 556 ~~-------~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~------------------------------g~ 598 (615)
.. .....+...+ ..++++||||+++..|+.++..|... ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00 1333444444 35789999999999999999988642 23
Q ss_pred cEEEEcCCCChhhhhcC
Q psy12410 599 EFLPLPAGITRFIWQWA 615 (615)
Q Consensus 599 ~~~~lhg~~~~~eR~~v 615 (615)
.+..+||+|++.+|..|
T Consensus 298 ~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp TCCEECTTSCHHHHHHH
T ss_pred CeEEecCCCCHHHHHHH
Confidence 57889999999999753
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=4e-31 Score=290.57 Aligned_cols=257 Identities=18% Similarity=0.179 Sum_probs=172.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|. .|+++|..+++.++.|+ |+.++||+|||++|++|++.+.+ .++.++||+||++||.|+++.+..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 354 89999999999999998 99999999999999999996653 36679999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc-cC-------
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF-DM------- 491 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~-~~------- 491 (615)
..+++.+++++||.+.. ...+..+++|+||||++| .++|..+.. ....++.+.++||||||.|+ ++
T Consensus 140 ~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 99999999999998754 334445699999999999 788875521 12457899999999999998 54
Q ss_pred --------CcHHHHHHHHHhcCC--------------------CCcEE------------------------EEeccCCh
Q psy12410 492 --------GFEPQVMRIIDNVRP--------------------DRQTV------------------------MFSATFPR 519 (615)
Q Consensus 492 --------~~~~~~~~i~~~~~~--------------------~~q~l------------------------~~SAT~~~ 519 (615)
+|...+..|+..+++ .+|++ +||||++.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 367788888888864 46654 89999764
Q ss_pred ---HHHHHH--HHHcC--------C-----------------------------CEEEEECCcccccCCeEE--------
Q psy12410 520 ---QMEALA--RRILN--------K-----------------------------PIEIQVGGRSVVCKEVEQ-------- 549 (615)
Q Consensus 520 ---~~~~~~--~~~~~--------~-----------------------------p~~i~~~~~~~~~~~i~~-------- 549 (615)
.+...+ ..++. + +..+.+.....+...|.+
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~ 377 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYE 377 (853)
T ss_dssp -----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhh
Confidence 222111 11111 1 111112111111122221
Q ss_pred ---------------------------------------EEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHH
Q psy12410 550 ---------------------------------------HVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSL 589 (615)
Q Consensus 550 ---------------------------------------~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l 589 (615)
.++.+....|+..|..++... ..+.++||||+|+..++.|
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~L 457 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELV 457 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 134567788998888888643 4567899999999999999
Q ss_pred HHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 590 LFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 590 ~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
+..|...|+++..|||++.+.+|.
T Consensus 458 s~~L~~~gi~~~vLnak~~~rEa~ 481 (853)
T 2fsf_A 458 SNELTKAGIKHNVLNAKFHANEAA 481 (853)
T ss_dssp HHHHHHTTCCCEECCTTCHHHHHH
T ss_pred HHHHHHCCCCEEEecCChhHHHHH
Confidence 999999999999999998888775
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=6.7e-31 Score=298.36 Aligned_cols=175 Identities=20% Similarity=0.253 Sum_probs=141.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q psy12410 339 DALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKE 418 (615)
Q Consensus 339 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 418 (615)
..+..+|+..|+++|.++|+.++.|+|+|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.|++..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999886543 12347899999999999999999
Q ss_pred HHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHH-
Q psy12410 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQV- 497 (615)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~- 497 (615)
+.+++...++.+..++|+.....+...+..+++|+|+||++|...+.... ...+..+++|||||||++.+......+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999888899999999987766667777789999999999999987642 225788999999999998865522222
Q ss_pred HHHHHh-----cCCCCcEEEEeccCC
Q psy12410 498 MRIIDN-----VRPDRQTVMFSATFP 518 (615)
Q Consensus 498 ~~i~~~-----~~~~~q~l~~SAT~~ 518 (615)
..++.. ..+..++|+||||+.
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccc
Confidence 222322 246789999999997
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=1.4e-29 Score=279.77 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=140.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+...+ ...++++|||+||++|+.|++..+..++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999887642 1337789999999999999999999999988
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHH-HHHHHHhc-
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQ-VMRIIDNV- 504 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~-~~~i~~~~- 504 (615)
++.+..++|+.........+..+++|+|+||++|...+.... ...+..+.+|||||||++.+.+.... +..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999999998777767777779999999999999987653 22578899999999999987753333 22333332
Q ss_pred ----CCCCcEEEEeccCCh
Q psy12410 505 ----RPDRQTVMFSATFPR 519 (615)
Q Consensus 505 ----~~~~q~l~~SAT~~~ 519 (615)
.+..|+|+||||++.
T Consensus 158 ~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SSCCSCCCEEEEEESCCCC
T ss_pred ccccCCCCeEEEEecCccc
Confidence 256899999999954
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=2.5e-31 Score=310.91 Aligned_cols=245 Identities=16% Similarity=0.247 Sum_probs=201.0
Q ss_pred HHHH-HCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 339 DALK-KQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 339 ~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
+.+. ..||. | ++|.++|+.++.|+|+|++||||||||+ |++|++.++.. .++++|||+||++||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 4444 36998 9 9999999999999999999999999998 88999888754 37889999999999999999
Q ss_pred HHHHhhhhcCc----EEEEEEcCCChhHH---HHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 418 EAKKFTKSLGL----RVVCVYGGTGISEQ---ISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 418 ~~~~~~~~~~~----~~~~~~g~~~~~~~---~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
.+..++...++ .+++++|+.....+ ...+.. ++|+||||++|.+++.. |..+.+|||||||+|++
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh
Confidence 99999998888 89999999987764 344455 99999999999986642 67899999999999997
Q ss_pred CCcHHHHHHHHHhc-----------CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHH
Q psy12410 491 MGFEPQVMRIIDNV-----------RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQK 559 (615)
Q Consensus 491 ~~~~~~~~~i~~~~-----------~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k 559 (615)
+...+..++..+ +..+|+++||||+++. ..++..++.++..+.+........++.+.++. ..+
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~---~~k 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN---DES 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---CCC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec---hhH
Confidence 467777777766 3568999999999987 65555555555555555555566778877762 345
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChh
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRF 610 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~ 610 (615)
...|..++... ++++||||+++..|+.|+..|... +.+..+||+|...
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~ 311 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGD 311 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHH
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHH
Confidence 55666777655 568999999999999999999988 9999999999644
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.2e-29 Score=291.17 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=136.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|+..|+|+|.++|+.++.|+++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.|++..+..++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999987642 1337789999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH-HHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM-RIID 502 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-~i~~ 502 (615)
...++.+++++|+.........+..+++|+||||++|...+.... ...+..+.+|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 988999999999998777777777789999999999999987542 2257889999999999998765444433 3332
Q ss_pred hc----CCCCcEEEEeccCC
Q psy12410 503 NV----RPDRQTVMFSATFP 518 (615)
Q Consensus 503 ~~----~~~~q~l~~SAT~~ 518 (615)
.. .+..|+|+||||++
T Consensus 399 ~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCC
T ss_pred HhhccCCCCCeEEEEcCCcc
Confidence 21 56789999999995
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=290.32 Aligned_cols=244 Identities=21% Similarity=0.228 Sum_probs=190.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
+| .|+++|.++|+.++.++++|+++|||+|||++|.++++..+. .++++|||+||++|+.|++..+..++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 45 599999999999999999999999999999999999988763 367999999999999999999998865
Q ss_pred hcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc
Q psy12410 425 SLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 504 (615)
.+++++|+..... +++|+|+||++|..++.... ..+..+.+|||||||+|.++++...+..++..+
T Consensus 155 ----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 155 ----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp ----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred ----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 6777888875432 48999999999999887653 457889999999999999999999999999999
Q ss_pred CCCCcEEEEeccCChHHHHHHHH---HcCCCEEEEECCcccccCCeEEEEEecC---------h----------------
Q psy12410 505 RPDRQTVMFSATFPRQMEALARR---ILNKPIEIQVGGRSVVCKEVEQHVIVLD---------E---------------- 556 (615)
Q Consensus 505 ~~~~q~l~~SAT~~~~~~~~~~~---~~~~p~~i~~~~~~~~~~~i~~~~~~~~---------~---------------- 556 (615)
++.+|+|+||||+++.. .++.+ ....++.+...... +..+.+++.... .
T Consensus 221 ~~~~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp CTTCEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred CCCCeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 99999999999998753 34444 34567665544322 223444433211 0
Q ss_pred ------------------------------hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc-------
Q psy12410 557 ------------------------------EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE------- 599 (615)
Q Consensus 557 ------------------------------~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~------- 599 (615)
......++..+... ..+++||||+++..|+.++..|...|+.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 11122233333332 3458999999999999999999876653
Q ss_pred --------------------------------EEEEcCCCChhhhhcC
Q psy12410 600 --------------------------------FLPLPAGITRFIWQWA 615 (615)
Q Consensus 600 --------------------------------~~~lhg~~~~~eR~~v 615 (615)
+..+||+|++.+|+.|
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 7889999999999753
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=3.6e-30 Score=283.26 Aligned_cols=258 Identities=18% Similarity=0.205 Sum_probs=198.4
Q ss_pred HCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 343 KQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 343 ~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..|+ .|+++|..++|.++.|+ |+.++||+|||++|++|++...+. |..|+||+||++||.|+++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3588 99999999999999998 999999999999999999765532 557999999999999999999999
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc-c-------
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF-D------- 490 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~-~------- 490 (615)
+..+|+.+++++||.+.... ....+++|+|+||+.| .++|..+-. ....++.+.++||||||.|+ +
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 99999999999999875433 3333599999999999 788775421 12457889999999999988 4
Q ss_pred --------CCcHHHHHHHHHhcC---------CCCcEE-----------------EEeccCCh---HHHHHH--HHHcC-
Q psy12410 491 --------MGFEPQVMRIIDNVR---------PDRQTV-----------------MFSATFPR---QMEALA--RRILN- 530 (615)
Q Consensus 491 --------~~~~~~~~~i~~~~~---------~~~q~l-----------------~~SAT~~~---~~~~~~--~~~~~- 530 (615)
++|...+..|+..++ +.+|++ +||||++. .+...+ ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 358899999999997 678998 89999875 333322 22222
Q ss_pred C-------CEEEEECCc-----------------------------ccccCCeE--------------------------
Q psy12410 531 K-------PIEIQVGGR-----------------------------SVVCKEVE-------------------------- 548 (615)
Q Consensus 531 ~-------p~~i~~~~~-----------------------------~~~~~~i~-------------------------- 548 (615)
+ +..+.+... ..+...|.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 111111110 00001111
Q ss_pred ---------------------EEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCC
Q psy12410 549 ---------------------QHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAG 606 (615)
Q Consensus 549 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~ 606 (615)
..++.+....|+..|+..+... ..+.++||||+|+..++.|+..|...|+++..|||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1134556778888888877643 456689999999999999999999999999999999
Q ss_pred CChhhhh
Q psy12410 607 ITRFIWQ 613 (615)
Q Consensus 607 ~~~~eR~ 613 (615)
+.+.+|.
T Consensus 494 ~~~rEa~ 500 (922)
T 1nkt_A 494 YHEQEAT 500 (922)
T ss_dssp CHHHHHH
T ss_pred hhHHHHH
Confidence 8877764
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=2.1e-29 Score=292.13 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|+++|.++|+.++.|+++|+++|||+|||++|+++++..+ ..++++|||+||++|+.|++..+..++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--------RNMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--------HTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 69999999999999999999999999999999999988775 2467899999999999999999988764 5
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 507 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~ 507 (615)
+.+..++|+.... ..++|+|+||++|..++.... ..+..+.+|||||||++.+++|...+..++..++++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 7888999987543 238999999999999887653 457889999999999999999999999999999999
Q ss_pred CcEEEEeccCChHHHHHHHHHc
Q psy12410 508 RQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 508 ~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
+|+|+||||+++.. .++.++.
T Consensus 179 v~iIlLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 179 VKFILLSATVPNTY-EFANWIG 199 (997)
T ss_dssp CEEEEEECCCTTHH-HHHHHHH
T ss_pred CCEEEEcCCCCChH-HHHHHHh
Confidence 99999999998764 5666654
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.4e-28 Score=297.25 Aligned_cols=271 Identities=18% Similarity=0.216 Sum_probs=202.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQAQAIPAIMS-GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
|.....+.+...+|..|+|+|.++|+.++. +.|++++||||||||++|.++|+.++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 556777888888999999999999999975 57899999999999999999999998764 36689999999999
Q ss_pred HHHHHHHHHH-hhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 412 CMQIGKEAKK-FTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 412 a~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
|.|++..+.+ |...+|++++.++|+..... ....+++|+||||++|..++... .....+.++.+|||||+|.+.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~-~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRW-KQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTT-TTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCc-ccccccceeeEEEeechhhcCC
Confidence 9999999876 55667899999988764322 22234899999999997766542 2224578899999999998876
Q ss_pred CCcHHHHHHHH-------HhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhH---HH
Q psy12410 491 MGFEPQVMRII-------DNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQ---KM 560 (615)
Q Consensus 491 ~~~~~~~~~i~-------~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~---k~ 560 (615)
. ....+..++ ..+++++|+|+||||+++ ..+++.|+...+..+........+..+..++....... ..
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 4 455444443 345678999999999986 47788887655543444444444555666655443211 11
Q ss_pred ----HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC----------------------------------CCcEEE
Q psy12410 561 ----LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP----------------------------------CLEFLP 602 (615)
Q Consensus 561 ----~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~----------------------------------g~~~~~ 602 (615)
..+...+......+++||||+++..|+.++..|... ..-+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 123445556667889999999999999888776321 124788
Q ss_pred EcCCCChhhhhcC
Q psy12410 603 LPAGITRFIWQWA 615 (615)
Q Consensus 603 lhg~~~~~eR~~v 615 (615)
+||+|++.+|..|
T Consensus 1219 hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1219 LHEGLSPMERRLV 1231 (1724)
T ss_dssp ECTTSCHHHHHHH
T ss_pred ECCCCCHHHHHHH
Confidence 9999999999753
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=8.8e-29 Score=287.08 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=134.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|+..|+|+|.++|+.++.|+++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.|++..+..++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999998875432 1236789999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHH-HHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM-RIID 502 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-~i~~ 502 (615)
...++.+.+++|+.....+...+..+++|+|+||++|...+.... ...+..+++|||||||++...+....+. .++.
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 988999999999987766656666679999999999999987542 2257789999999999998765433332 3333
Q ss_pred hc----CCCCcEEEEeccCC
Q psy12410 503 NV----RPDRQTVMFSATFP 518 (615)
Q Consensus 503 ~~----~~~~q~l~~SAT~~ 518 (615)
.. .+..|+|+||||+.
T Consensus 399 ~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCC
T ss_pred HhhccCCCcCeEEEecCCcc
Confidence 21 56689999999995
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=2.7e-28 Score=294.74 Aligned_cols=265 Identities=23% Similarity=0.268 Sum_probs=196.7
Q ss_pred CCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCC---CCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPL---EETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
||..|+++|.+++|.++ +++|+|++||||||||++|.++|+..+...... ....+.++|||+|+++||.|++..+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999999764321 22357899999999999999999999
Q ss_pred HhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 421 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
+.+..+|+.|..++|++..... ...+++|+||||+++..++... .....+..+.+|||||+|.+.+ ..+..+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9999999999999998865432 1235899999999986555432 2223478999999999997654 566665554
Q ss_pred HH-------hcCCCCcEEEEeccCChHHHHHHHHHcCCC-EEEEECCcccccCCeEEEEEecChh---HHH----HHHHH
Q psy12410 501 ID-------NVRPDRQTVMFSATFPRQMEALARRILNKP-IEIQVGGRSVVCKEVEQHVIVLDEE---QKM----LKLLE 565 (615)
Q Consensus 501 ~~-------~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p-~~i~~~~~~~~~~~i~~~~~~~~~~---~k~----~~l~~ 565 (615)
+. .+++..|+|++|||+++ .++++.++..++ ..+.+......+-.+.+.++.+... ... ..+..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 43 45778999999999986 466777665443 1222333444445566666554322 111 22334
Q ss_pred HHhccCCCCcEEEEeCCcchHHHHHHHhhcC-------------------------------------CCcEEEEcCCCC
Q psy12410 566 LLGIYQDQGSVIVFVDKQENADSLLFHSMDP-------------------------------------CLEFLPLPAGIT 608 (615)
Q Consensus 566 ~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~lhg~~~ 608 (615)
.+......+++||||+++..|+.++..|... .+-+...||||+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 4445556779999999999999888877531 123778999999
Q ss_pred hhhhhcC
Q psy12410 609 RFIWQWA 615 (615)
Q Consensus 609 ~~eR~~v 615 (615)
+.+|..|
T Consensus 390 ~~~R~~v 396 (1724)
T 4f92_B 390 RVDRTLV 396 (1724)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 9999753
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.2e-28 Score=260.93 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.|+|+|.++++.++.+ ++|+.+|||+|||++++++++..+.. .+.++|||+||++|+.|+.+.+.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999999 99999999999999999999888752 366899999999999999999999874334
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 507 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~ 507 (615)
..+..++|+...... ..+..+++|+|+||+.|...+.... ..+..+++|||||||++.+......+..++....+.
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 588888888766544 3333458999999999999887542 457889999999999998766667777777777788
Q ss_pred CcEEEEeccCChH---HHHHHHHH
Q psy12410 508 RQTVMFSATFPRQ---MEALARRI 528 (615)
Q Consensus 508 ~q~l~~SAT~~~~---~~~~~~~~ 528 (615)
.++|+||||+... +..++..+
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCcHHHHHHHHhc
Confidence 9999999999743 44444433
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=2.3e-27 Score=279.01 Aligned_cols=257 Identities=16% Similarity=0.124 Sum_probs=196.9
Q ss_pred cCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHc----CC--CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEE
Q psy12410 331 CGVSKKILDALKKQ-NYEKPTPIQAQAIPAIMS----GR--DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAI 403 (615)
Q Consensus 331 ~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~----~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 403 (615)
++++..+...+... +| .|||+|.++|+.++. ++ ++|++++||+|||++|+++++..+ ..++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--------~~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------DNHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--------TTTCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH--------HhCCeEE
Confidence 35566777776544 55 689999999999986 65 999999999999999999988776 3467999
Q ss_pred EEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccE
Q psy12410 404 IMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479 (615)
Q Consensus 404 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 479 (615)
||+||++||.|+++.+..++..+++.+.+++|....... ...+..| ++|+|+||+.|. . ...+.++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~----~~~~~~l~l 728 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S----DVKFKDLGL 728 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S----CCCCSSEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C----Cccccccce
Confidence 999999999999999999988888999999887665544 3445555 999999997663 1 245789999
Q ss_pred EEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHH
Q psy12410 480 IVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQK 559 (615)
Q Consensus 480 lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k 559 (615)
|||||||++. .....++..++..+++|+||||+++....++...+.++..+.. .......+.+++........
T Consensus 729 vIiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~~~~~i 801 (1151)
T 2eyq_A 729 LIVDEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREYDSMVV 801 (1151)
T ss_dssp EEEESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEECCHHHH
T ss_pred EEEechHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecCCHHHH
Confidence 9999999953 3445666677778999999999988766666655555433222 22223456666555444332
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcC--CCcEEEEcCCCChhhhhc
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDP--CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~ 614 (615)
. ..++.....++++||||+++..|+.++..|... ++.+..+||+|++.+|+.
T Consensus 802 ~---~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 802 R---EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 855 (1151)
T ss_dssp H---HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHH
T ss_pred H---HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHH
Confidence 2 333444456789999999999999999999876 899999999999999975
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=3.4e-28 Score=273.51 Aligned_cols=252 Identities=19% Similarity=0.173 Sum_probs=180.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 336 KILDALKKQNYEKPTPIQAQAIPAIMSG------RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 336 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
.+...+...+| .||++|.++|+.|+.+ .++|++|+||||||++|++|++..+. ++.++|||+||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcH
Confidence 34445567788 9999999999999865 59999999999999999999998874 367899999999
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 410 ELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 410 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
+||.|+++.+..++..+++++.+++|+...... ...+..| ++|+|+||+.|.+ ...+.++++||||||
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE--------DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--------CCCCSCCCEEEEESC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--------hhhccCCceEEeccc
Confidence 999999999999999889999999999876654 3445555 9999999987743 145788999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHH
Q psy12410 486 DRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLE 565 (615)
Q Consensus 486 h~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 565 (615)
|++.... ...+......+++|+||||+.+... ...++.+.-...+.........+...+.... +...++.
T Consensus 500 Hr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl--~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~ 569 (780)
T 1gm5_A 500 HRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSM--ALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYE 569 (780)
T ss_dssp CCC----------CCCCSSSSCCCEEEEESSCCCHHH--HHHHTCCSSCEEECCCCSSCCCCEECCCCSS---THHHHHH
T ss_pred chhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHH--HHHHhCCcceeeeeccCCCCcceEEEEeccc---hHHHHHH
Confidence 9864221 1222233456899999999887543 3334443321222222222233443332222 2233344
Q ss_pred HHh-ccCCCCcEEEEeCCcc--------hHHHHHHHhhc---CCCcEEEEcCCCChhhhhc
Q psy12410 566 LLG-IYQDQGSVIVFVDKQE--------NADSLLFHSMD---PCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 566 ~l~-~~~~~~~~LIF~~s~~--------~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~ 614 (615)
.+. ....+++++|||++++ .|+.++..|.. .|+.+..+||+|++.+|+.
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHH
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHH
Confidence 443 3445678999999764 57889999988 5889999999999999875
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=279.32 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=129.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHH-HHHHHHhhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQI-GKEAKKFTKS 425 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~~~~~~~ 425 (615)
..|+|+|.++++.++.|+++|+++|||+|||++|++|++.++..... ...++++|||+||++|+.|+ +..+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988764310 12237899999999999999 9999999875
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC---CCcccCCCccEEEEccccccccCCcHHHHHH-HH
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS---GRVTNLRRVTYIVLDEADRMFDMGFEPQVMR-II 501 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~-i~ 501 (615)
++.+..++|+.........+..+++|+|+||++|...+.... .....+..+++|||||||++...+++..+.. ++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 589999999987776666677789999999999998774321 1224578899999999998865443332222 22
Q ss_pred H----hcC---------CCCcEEEEeccCCh
Q psy12410 502 D----NVR---------PDRQTVMFSATFPR 519 (615)
Q Consensus 502 ~----~~~---------~~~q~l~~SAT~~~ 519 (615)
. ... +..|+|+||||++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HhhhcccccccccccCCCCCEEEEecccccc
Confidence 1 112 67899999999986
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=4.1e-27 Score=266.47 Aligned_cols=272 Identities=18% Similarity=0.250 Sum_probs=188.5
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCC
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGP 400 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 400 (615)
+.++..|.++++++.+.+.+...+ ..|+++|+++|+.++ .+++++++||||||||++ +|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcc---ccCCCc
Confidence 346778999999999999998887 689999999998877 457899999999999994 4444222111 012367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEE
Q psy12410 401 MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480 (615)
Q Consensus 401 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~l 480 (615)
.++|++|+++||.|++..+... +++.+...+|+...... ....+.+|+|+|||+|...+... ..+..+++|
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~l 212 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED----HDLSRYSCI 212 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEE
Confidence 8999999999999998766544 33333222222111000 01134899999999999887764 458899999
Q ss_pred EEccccc-cccCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHH
Q psy12410 481 VLDEADR-MFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQK 559 (615)
Q Consensus 481 VvDEah~-~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k 559 (615)
||||||. +++..+...+...+....++.|+|+||||++. ..+.. ++.++..+.+.+.. ..+.+++........
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc---cceEEEEecCCchhH
Confidence 9999994 66644333333333344578999999999964 44554 45544335544433 346666554444333
Q ss_pred HHH----HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhc-----------CCCcEEEEcCCCChhhhhcC
Q psy12410 560 MLK----LLELLGIYQDQGSVIVFVDKQENADSLLFHSMD-----------PCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 560 ~~~----l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~-----------~g~~~~~lhg~~~~~eR~~v 615 (615)
... +..++. ....+++||||+++..|+.++..|.. .++.+..+||+|++.+|..|
T Consensus 287 ~~~~l~~l~~~~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 287 LDSAIRTVLQIHA-TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp HHHHHHHHHHHHH-HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHH-hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 322 222222 23578999999999999999999975 68899999999999999864
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.94 E-value=2e-27 Score=259.82 Aligned_cols=248 Identities=12% Similarity=0.073 Sum_probs=178.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
...|+|+|.++++.++.++++|++++||+|||++|+++++..+.. .++++|||+||++|+.|+++.+.++...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 348999999999999999999999999999999999988887643 2458999999999999999999998665
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
.++.+..++|+.....+ +..+++|+|+||+.|... ....+..+++|||||||++.. ..+..++..+.
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 56788888888776654 445689999999976432 124467899999999999874 66778888888
Q ss_pred CCCcEEEEeccCChHHHHHH-HHHcCCCEEEEECCcc------cccCCeEEEEEecCh---------------------h
Q psy12410 506 PDRQTVMFSATFPRQMEALA-RRILNKPIEIQVGGRS------VVCKEVEQHVIVLDE---------------------E 557 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~-~~~~~~p~~i~~~~~~------~~~~~i~~~~~~~~~---------------------~ 557 (615)
+..++|+||||+++....+. ...+..+..+.+.... .....+....+.... .
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 88999999999976543322 1222333332222111 111112222222211 1
Q ss_pred HHHHHHHHHHhcc-CC-CCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 558 QKMLKLLELLGIY-QD-QGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 558 ~k~~~l~~~l~~~-~~-~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+...+..++... .. ..++||||+ ..+|+.|+..|...|..+..+||+|++.+|+.
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~ 388 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNI 388 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHH
Confidence 1223344444433 22 335566666 99999999999999889999999999999875
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.93 E-value=1.5e-26 Score=247.92 Aligned_cols=223 Identities=15% Similarity=0.119 Sum_probs=156.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDL-IGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~-i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
|+.+|+|+|+ +||.++.++++ |+++|||||||++|++|++.++.. .++++|||+||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 5778999985 79999998887 888999999999999999988764 36789999999999999988764
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHH-
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID- 502 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~- 502 (615)
++.+....+.... ....+..|.|+|++.|...+... ..+.++++|||||||++ +.++...+..+..
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333322211110 11234679999999998877653 45789999999999976 4443333333332
Q ss_pred hcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCC
Q psy12410 503 NVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDK 582 (615)
Q Consensus 503 ~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s 582 (615)
...+++|+|+||||+++.+..+ +..++..+.+.. ...... + ..+...+.. ..+++||||++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~----~---------~~~~~~l~~--~~~~~lVF~~s 197 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS----W---------NTGFDWITD--YQGKTVWFVPS 197 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC----C---------SSSCHHHHH--CCSCEEEECSS
T ss_pred hcCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCchh----h---------HHHHHHHHh--CCCCEEEEcCC
Confidence 3456899999999998754322 233443333321 111000 0 011222333 25689999999
Q ss_pred cchHHHHHHHhhcCCCcEEEEcCCCChh
Q psy12410 583 QENADSLLFHSMDPCLEFLPLPAGITRF 610 (615)
Q Consensus 583 ~~~a~~l~~~L~~~g~~~~~lhg~~~~~ 610 (615)
+..|+.++..|...|+.+..+||++.+.
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~~~ 225 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTFDT 225 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTHHH
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHHHH
Confidence 9999999999999999999999987653
No 59
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.93 E-value=1.6e-26 Score=253.02 Aligned_cols=218 Identities=16% Similarity=0.142 Sum_probs=159.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
.++++|..+++.+..++++|++||||||||++|.++++.. +.++|||+|||+||.|+++.+.+. ++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~---~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKA---HG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHH---HS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHH---hC
Confidence 3455666666777788999999999999999999888752 568999999999999998766554 45
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 507 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~ 507 (615)
..+...+|+.. +..+++|+|+||++|+ ... ...+.++++||||||| +++++|...+..|+..++..
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~---~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADG---GCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTT---SCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hCC---CcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 66777777754 3456999999999983 222 3567889999999997 56788888999999999877
Q ss_pred Cc--EEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcch
Q psy12410 508 RQ--TVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQEN 585 (615)
Q Consensus 508 ~q--~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~ 585 (615)
+| +++||||+++.+. ...|....+... . ...+. ....... +. ....+++||||++++.
T Consensus 349 ~~~llil~SAT~~~~i~------~~~p~i~~v~~~-~-~~~i~----~~~~~~~-------l~-~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 349 GARLVVLATATPPGSVT------VPHPNIEEVALS-N-TGEIP----FYGKAIP-------IE-AIRGGRHLIFCHSKKK 408 (666)
T ss_dssp TCSEEEEEESSCTTCCC------CCCTTEEEEECB-S-CSSEE----ETTEEEC-------GG-GSSSSEEEEECSCHHH
T ss_pred CCceEEEECCCCCcccc------cCCcceEEEeec-c-cchhH----HHHhhhh-------hh-hccCCcEEEEeCCHHH
Confidence 77 6778999987421 111111111000 0 00111 0000000 11 1246799999999999
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 586 ADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 586 a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
|+.|+..|...|+.+..+||+|++.+|.
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~er~ 436 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSVIP 436 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGGSC
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHHHH
Confidence 9999999999999999999999998864
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=3e-27 Score=261.14 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=163.3
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 331 CGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 331 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
+++++.+++.|... ...++|+|+.+++.++.++++|++||||||||++|++|++..++. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555554444332 467899988889999999999999999999999999999998865 3678999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 411 La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
||.|+++.+. ++.+. +.+... . .....+..|.++|.+.|...+... ..+.++++|||||||++ +
T Consensus 227 La~Qi~~~l~------~~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 227 VAAEMEEALR------GLPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHTT------TSCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHhc------CCcee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-C
Confidence 9999987765 23333 222110 0 001123567788998887766643 45889999999999998 6
Q ss_pred CCcHHHHHHHHHhcC-CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhc
Q psy12410 491 MGFEPQVMRIIDNVR-PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGI 569 (615)
Q Consensus 491 ~~~~~~~~~i~~~~~-~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 569 (615)
.+|...+..|+..++ +++|+|+||||++..+..++. .++..+.+... . +. .++..++..+..
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~------------~~-~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I------------PE-RSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C------------CS-SCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C------------CH-HHHHHHHHHHHh
Confidence 778888888887775 789999999999876443222 23332222211 0 00 000112223332
Q ss_pred cCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCC
Q psy12410 570 YQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAG 606 (615)
Q Consensus 570 ~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~ 606 (615)
..+++||||+++..|+.|+..|...|+.+..|||+
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 388 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 388 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH
Confidence 26689999999999999999999999999999995
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=1.2e-24 Score=235.39 Aligned_cols=227 Identities=19% Similarity=0.148 Sum_probs=162.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|+|+|.++++.++.+.++|+++|||+|||++|++++... +.++||||||++|+.|++..+..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999999888754 457999999999999998888774
Q ss_pred CcE-EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 427 GLR-VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 427 ~~~-~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
++. +.+++|+... .++|+|+||+.|...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~- 216 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS- 216 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-
Confidence 677 8888777642 379999999998776542 12468999999999999877653 44444
Q ss_pred CCCcEEEEeccCChH-------------------HHHHHHHHcCCCEE--EEECCccc----------------------
Q psy12410 506 PDRQTVMFSATFPRQ-------------------MEALARRILNKPIE--IQVGGRSV---------------------- 542 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~-------------------~~~~~~~~~~~p~~--i~~~~~~~---------------------- 542 (615)
+..++|++|||+.+. ...+...++..+.. +.+.-...
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 467899999999731 22222222222211 11100000
Q ss_pred --ccCCeEEEE---------------------EecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 543 --VCKEVEQHV---------------------IVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 543 --~~~~i~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
....+.+.+ +.+....|...|..++.. ..++++||||++...++.|+..|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~----- 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL----- 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----
Confidence 000000000 012233466677777776 356799999999999999999984
Q ss_pred EEEEcCCCChhhhhc
Q psy12410 600 FLPLPAGITRFIWQW 614 (615)
Q Consensus 600 ~~~lhg~~~~~eR~~ 614 (615)
+..+||+++..+|+.
T Consensus 371 ~~~~~g~~~~~~R~~ 385 (472)
T 2fwr_A 371 IPAITHRTSREEREE 385 (472)
T ss_dssp CCBCCSSSCSHHHHT
T ss_pred cceeeCCCCHHHHHH
Confidence 567999999999875
No 62
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=209.73 Aligned_cols=169 Identities=22% Similarity=0.239 Sum_probs=123.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH-HHHHHHHhh
Q psy12410 345 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ-IGKEAKKFT 423 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q-~~~~~~~~~ 423 (615)
....|+++|.++++.++.++++++++|||+|||++|+++++.++..... ...++++|||+||++|+.| +.+.+..+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999887654210 1236789999999999999 777888887
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCC---CcccCCCccEEEEccccccccCCcHHHHHHH
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSG---RVTNLRRVTYIVLDEADRMFDMGFEPQVMRI 500 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~---~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i 500 (615)
.. ++.+..++|+.........+..+++|+|+||+.|...+..... ....+..+.+|||||||++...+++..+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 65 6888888888766655555555699999999999988875421 1134678899999999999877766665433
Q ss_pred HHhc--------------CCCCcEEEEecc
Q psy12410 501 IDNV--------------RPDRQTVMFSAT 516 (615)
Q Consensus 501 ~~~~--------------~~~~q~l~~SAT 516 (615)
+... .+..++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 3221 167899999998
No 63
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=2.4e-22 Score=220.38 Aligned_cols=133 Identities=22% Similarity=0.266 Sum_probs=114.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|+ .|+++|..++|.+++|+ |+.++||+|||++|++|++...+ .|..|+||+||++||.|+++.+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--------~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL--------TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT--------TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH--------hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 688 99999999999999998 99999999999999999976553 25579999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHH-HHHHHhcCC---CcccCC---CccEEEEccccccc
Q psy12410 424 KSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM-IDMLAANSG---RVTNLR---RVTYIVLDEADRMF 489 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~---~~~~lVvDEah~~~ 489 (615)
..+|+.+++++||.+... .....+++|+|+||+.| .++|..+.. ....++ .+.++||||||.|+
T Consensus 145 ~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999987443 33344699999999999 788876521 123467 89999999999887
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.90 E-value=5.5e-24 Score=236.57 Aligned_cols=251 Identities=16% Similarity=0.120 Sum_probs=140.2
Q ss_pred CCCCHHHHHHHHHHHc----C-CCEEEEccCCCchhHHhHHHHHHHHhcCC--CCCCCCCCeEEEEcCcHHHHHHHH-HH
Q psy12410 347 EKPTPIQAQAIPAIMS----G-RDLIGIAKTGSGKTVAFVLPLLRHILDQP--PLEETDGPMAIIMSPTRELCMQIG-KE 418 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~----~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~Ptr~La~q~~-~~ 418 (615)
..|+++|.++++.++. + ++++++++||+|||++++..+. .++... ......++++|||+||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999875 4 6699999999999999655444 443321 001125789999999999999997 66
Q ss_pred HHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC-CCcccCCCccEEEEccccccccCCcHHHH
Q psy12410 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANS-GRVTNLRRVTYIVLDEADRMFDMGFEPQV 497 (615)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~l~~~~~lVvDEah~~~~~~~~~~~ 497 (615)
+..| +..+..+.++. +..+.+|+|+||+.|...+.... .....+..+++|||||||++...+ ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 6655 33444444332 23458999999999987654211 112345679999999999987542 3566
Q ss_pred HHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccc---cCCeEEEEE----------------------
Q psy12410 498 MRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVV---CKEVEQHVI---------------------- 552 (615)
Q Consensus 498 ~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~---~~~i~~~~~---------------------- 552 (615)
..++..++ ..++|+||||+..........+++.++.......... ........+
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 77777775 4679999999875443334445555443221000000 000000000
Q ss_pred ------ecChh-------HHH----HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc--------EEEEcCCC
Q psy12410 553 ------VLDEE-------QKM----LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE--------FLPLPAGI 607 (615)
Q Consensus 553 ------~~~~~-------~k~----~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~--------~~~lhg~~ 607 (615)
..... .+. ..+..++......+++||||+++.+|+.|+..|...+.. +..+||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 00000 011 123344444455689999999999999999999875432 78899998
Q ss_pred Chhhhh
Q psy12410 608 TRFIWQ 613 (615)
Q Consensus 608 ~~~eR~ 613 (615)
++ +|+
T Consensus 482 ~~-~r~ 486 (590)
T 3h1t_A 482 GK-IGK 486 (590)
T ss_dssp HH-HHH
T ss_pred hH-HHH
Confidence 75 454
No 65
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=202.01 Aligned_cols=182 Identities=19% Similarity=0.270 Sum_probs=133.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHH
Q psy12410 335 KKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQ 414 (615)
Q Consensus 335 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 414 (615)
+.+...+.......++++|.++++.+..|++++++|+||||||+++.++++..+..... ..++.+||++|+++|+.|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHH
Confidence 33444444334456899999999999999999999999999999999999887765421 235689999999999999
Q ss_pred HHHHHHHhhhh-cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc-ccCC
Q psy12410 415 IGKEAKKFTKS-LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM-FDMG 492 (615)
Q Consensus 415 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~-~~~~ 492 (615)
+++.+...... .+..+......... ....+++|+||||++|++++.. .+.++++|||||||.+ ++++
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~ 193 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTD 193 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchH
Confidence 98877665432 23333322211100 0013478999999999999875 3789999999999986 7777
Q ss_pred cHH-HHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCE
Q psy12410 493 FEP-QVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPI 533 (615)
Q Consensus 493 ~~~-~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~ 533 (615)
|.. .+..++.. .+++|+|+||||++... +..++...|+
T Consensus 194 ~~~~~l~~i~~~-~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 194 FLLVVLRDVVQA-YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHH-CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHHhh-CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 774 44444444 46899999999999865 6776666665
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.89 E-value=2.5e-25 Score=237.45 Aligned_cols=201 Identities=15% Similarity=0.119 Sum_probs=130.7
Q ss_pred HHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCC
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTG 438 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 438 (615)
+++.|+|+|++||||||||++|++|++..+.. +++++|||+||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce
Confidence 35689999999999999999999999998764 3678999999999999998877643 2222111110
Q ss_pred hhHHHHHHhcCCcEEEEChHHHHHHHHhc-----CCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEE
Q psy12410 439 ISEQISELKRGAEIIVCTPGRMIDMLAAN-----SGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVM 512 (615)
Q Consensus 439 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~ 512 (615)
+|+||+.+++++... ......+.++.+|||||||++ +.++...+..+...+ ++.+|+|+
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred --------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 255554443221110 001134789999999999998 343433333333332 46799999
Q ss_pred EeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHH
Q psy12410 513 FSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFH 592 (615)
Q Consensus 513 ~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~ 592 (615)
||||+++.+..++.. ..++... ...+..... ..++..+.. .++++||||+++..|+.++..
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~-~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDV--------------QTDIPSEPW-NTGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEE--------------ECCCCSSCC-SSSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEe--------------eeccChHHH-HHHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 999998764422221 1122111 111111111 111222222 257999999999999999999
Q ss_pred hhcCCCcEEEEcCC
Q psy12410 593 SMDPCLEFLPLPAG 606 (615)
Q Consensus 593 L~~~g~~~~~lhg~ 606 (615)
|...|+.+..+||+
T Consensus 197 L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 197 LRKAGKSVVVLNRK 210 (440)
T ss_dssp HHHTTCCEEECCSS
T ss_pred HHHcCCCEEEecch
Confidence 99999999999993
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.89 E-value=5.4e-24 Score=228.45 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=137.6
Q ss_pred HHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcC
Q psy12410 357 IPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGG 436 (615)
Q Consensus 357 i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 436 (615)
..++..++++|+++|||||||++|++|++.+++. .++++|||+||++||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 3445678999999999999999999999998764 36789999999999999988775 3333322211
Q ss_pred CChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccc-----ccCCcHHHHHHHHHhcCCCCcEE
Q psy12410 437 TGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM-----FDMGFEPQVMRIIDNVRPDRQTV 511 (615)
Q Consensus 437 ~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~-----~~~~~~~~~~~i~~~~~~~~q~l 511 (615)
... .-..+..|.++|.+.+...+... ..+.++++|||||||++ +.++|...+. ..+++|+|
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 110 01233567789999887766643 45889999999999983 3333322221 23689999
Q ss_pred EEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHH
Q psy12410 512 MFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLF 591 (615)
Q Consensus 512 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~ 591 (615)
+||||++..+..+... ..|+...... ...... ..++.++... .+++||||+++..|+.++.
T Consensus 148 l~SAT~~~~~~~~~~~--~~pi~~~~~~--~~~~~~-------------~~~~~~l~~~--~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 148 FMTATPPGTTDPFPDS--NAPIHDLQDE--IPDRAW-------------SSGYEWITEY--AGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECC--CCSSCC-------------SSCCHHHHHC--CSCEEEECSCHHHHHHHHH
T ss_pred EEEcCCCcchhhhccC--CCCeEEeccc--CCcchh-------------HHHHHHHHhc--CCCEEEEeCChHHHHHHHH
Confidence 9999998764332221 3344332110 000000 0112223332 6789999999999999999
Q ss_pred HhhcCCCcEEEEcCC
Q psy12410 592 HSMDPCLEFLPLPAG 606 (615)
Q Consensus 592 ~L~~~g~~~~~lhg~ 606 (615)
.|...|+.+..|||+
T Consensus 209 ~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK 223 (459)
T ss_dssp HHHHTTCCEEEESTT
T ss_pred HHHhcCCcEEecCHH
Confidence 999999999999995
No 68
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=1.3e-24 Score=241.65 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=142.4
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH
Q psy12410 348 KPTPIQA-----QAIPAIM------SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG 416 (615)
Q Consensus 348 ~~~~~Q~-----~~i~~i~------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 416 (615)
.|+++|+ ++||.++ .++|+|++||||||||++|++|++..+.. .++++|||+||++||.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHH
Confidence 8999999 9999988 89999999999999999999999988764 3678999999999999998
Q ss_pred HHHHHhhhhcCcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHH
Q psy12410 417 KEAKKFTKSLGLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEP 495 (615)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~ 495 (615)
+.+..+ ++. ...+.. ..+. .+.-+-+.+.+.+...+... ..+.++.+|||||||++ +..+..
T Consensus 288 ~~l~~~----~i~--~~~~~l------~~v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~-~~~~~~ 350 (673)
T 2wv9_A 288 EALRGL----PVR--YLTPAV------QREHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT-DPASIA 350 (673)
T ss_dssp HHTTTS----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC-CHHHHH
T ss_pred HHHhcC----Cee--eecccc------cccCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc-CccHHH
Confidence 877654 322 111100 0011 11234455555555444432 45889999999999998 222233
Q ss_pred HHHHHHHhc-CCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCC
Q psy12410 496 QVMRIIDNV-RPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQG 574 (615)
Q Consensus 496 ~~~~i~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 574 (615)
.+..+...+ +..+|+|+||||+++.+..+... ..|+..... .+.... ...++..+.. ..+
T Consensus 351 ~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~--------------~~~~~~-~~~~l~~l~~--~~~ 411 (673)
T 2wv9_A 351 ARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS--------------EIPDRA-WSSGFEWITD--YAG 411 (673)
T ss_dssp HHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSC-CSSCCHHHHS--CCS
T ss_pred HHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee--------------ecCHHH-HHHHHHHHHh--CCC
Confidence 333333333 36799999999998764322211 122211111 011110 0111222322 467
Q ss_pred cEEEEeCCcchHHHHHHHhhcCCCcEEEEcCC
Q psy12410 575 SVIVFVDKQENADSLLFHSMDPCLEFLPLPAG 606 (615)
Q Consensus 575 ~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~ 606 (615)
++||||+++..|+.++..|...|+.+..|||+
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~ 443 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK 443 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCeEEEeChH
Confidence 99999999999999999999999999999994
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=3.6e-23 Score=220.26 Aligned_cols=204 Identities=17% Similarity=0.153 Sum_probs=137.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
.|+++|+++|||||||++|++|++.++.. +++++|||+||++||.|+++.+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999977654 36789999999999999977664 4455554443211
Q ss_pred HHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-CCCCcEEEEeccCChH
Q psy12410 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV-RPDRQTVMFSATFPRQ 520 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~q~l~~SAT~~~~ 520 (615)
....+.-+.++|.+.+...+... ..+.++.+|||||||++ +.++...+..+.... ++.+|+|+||||+++.
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 11124667788999887666543 45888999999999987 444444444444432 5689999999999874
Q ss_pred HHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcE
Q psy12410 521 MEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEF 600 (615)
Q Consensus 521 ~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~ 600 (615)
+..+... ..|+.... ..+.. .+...++.++... .+++||||+++..|+.++..|...|+.+
T Consensus 138 ~~~~~~~--~~~i~~~~--------------~~~~~-~~~~~~~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEAFPPS--NSPIIDEE--------------TRIPD-KAWNSGYEWITEF--DGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCSSCCC--SSCCEEEE--------------CCCCS-SCCSSCCHHHHSC--SSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhhhcCC--CCceeecc--------------ccCCH-HHHHHHHHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 3221110 11211110 00110 0111223334432 5689999999999999999999999999
Q ss_pred EEEcCCC
Q psy12410 601 LPLPAGI 607 (615)
Q Consensus 601 ~~lhg~~ 607 (615)
..+||++
T Consensus 199 ~~lhg~~ 205 (431)
T 2v6i_A 199 LYLNRKT 205 (431)
T ss_dssp EEESTTT
T ss_pred EEeCCcc
Confidence 9999984
No 70
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=5.1e-23 Score=206.91 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=127.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|+++|.++++.++.+.+.|+++|||+|||+++++++..++... ..++|||+||++|+.|+++.+.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 389999999999999888899999999999999988887766432 3479999999999999999999997666
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
++.+..++||..... ....+++|+|+||+.|.... ...+..+++|||||||++. ...+..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~ 251 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLAT----GKSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCC----cccHHHHHHHhhc
Confidence 677888888875543 22245899999998874421 1346788999999999987 4578888888878
Q ss_pred CCcEEEEeccCChHHH
Q psy12410 507 DRQTVMFSATFPRQME 522 (615)
Q Consensus 507 ~~q~l~~SAT~~~~~~ 522 (615)
..++|+||||+++...
T Consensus 252 ~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 252 CMFKFGLSGSLRDGKA 267 (282)
T ss_dssp CCEEEEECSSCCTTST
T ss_pred CCeEEEEeCCCCCcch
Confidence 9999999999986543
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.86 E-value=2.6e-22 Score=222.39 Aligned_cols=212 Identities=15% Similarity=0.053 Sum_probs=149.5
Q ss_pred HHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcC
Q psy12410 357 IPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGG 436 (615)
Q Consensus 357 i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 436 (615)
....+.++++|++||||||||+. ++..+... +.+||++||++||.|+++.+..+ ++.+.+++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 34557899999999999999984 44444332 23599999999999999988775 7888999988
Q ss_pred CChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC-CCCcEEEEec
Q psy12410 437 TGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR-PDRQTVMFSA 515 (615)
Q Consensus 437 ~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-~~~q~l~~SA 515 (615)
...... ......+++++|++.+ ..+..+++|||||||++++.+|...+..++..++ ...|++++||
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SA 279 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPA 279 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGG
T ss_pred eeEEec--CCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccc
Confidence 644100 0001267888887443 2246789999999999999999999999998887 6789999999
Q ss_pred cCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhc
Q psy12410 516 TFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMD 595 (615)
Q Consensus 516 T~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~ 595 (615)
|. +.+..++... ..++.+...... ..+......+ ..+... ....||||+++..|+.++..|..
T Consensus 280 T~-~~i~~l~~~~-~~~~~v~~~~r~---~~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~ 342 (677)
T 3rc3_A 280 AI-DLVMELMYTT-GEEVEVRDYKRL---TPISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEI 342 (677)
T ss_dssp GH-HHHHHHHHHH-TCCEEEEECCCS---SCEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHhc-CCceEEEEeeec---chHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHh
Confidence 95 3445444443 444444322111 1111100000 111122 23468999999999999999999
Q ss_pred CCCcEEEEcCCCChhhhhc
Q psy12410 596 PCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 596 ~g~~~~~lhg~~~~~eR~~ 614 (615)
.|+.|..+||+|++.+|+.
T Consensus 343 ~g~~v~~lHG~L~~~~R~~ 361 (677)
T 3rc3_A 343 RGLESAVIYGSLPPGTKLA 361 (677)
T ss_dssp TTCCCEEECTTSCHHHHHH
T ss_pred cCCCeeeeeccCCHHHHHH
Confidence 9999999999999999875
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.84 E-value=8.1e-21 Score=219.06 Aligned_cols=157 Identities=19% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCCCHHHHHHHHHHHc--------------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 347 EKPTPIQAQAIPAIMS--------------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~--------------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+... ...+++||||||++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 368999999999999997 5565544321 2356999999999999
Q ss_pred HHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHh-cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccC
Q psy12410 413 MQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELK-RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDM 491 (615)
Q Consensus 413 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~ 491 (615)
.|+...+..|... .+.++.+.......+. .+++|+|+||++|..++..... ...+..+.+|||||||++..
T Consensus 344 ~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD-LPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC-CGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc-hhccccccEEEEEccchhcc-
Confidence 9999999888653 1234555555555554 4589999999999988765321 12456788999999999763
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEeccCChH
Q psy12410 492 GFEPQVMRIIDNVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 492 ~~~~~~~~i~~~~~~~~q~l~~SAT~~~~ 520 (615)
...+..|+..++ ..++|+||||+...
T Consensus 416 --~~~~~~I~~~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 416 --GEAQKNLKKKFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp --HHHHHHHHHHCS-SEEEEEEESSCCCS
T ss_pred --hHHHHHHHHhCC-cccEEEEeCCcccc
Confidence 334556666664 57899999999753
No 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.84 E-value=1.9e-20 Score=203.87 Aligned_cols=244 Identities=13% Similarity=0.155 Sum_probs=161.3
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..|+|+|.+++..+. .+.++|++++||+|||++++..+. .+... .....+|||||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 379999999998773 678999999999999999755444 33322 234579999995 5889999999999
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHH
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIID 502 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~ 502 (615)
+. ++.+.+++|+... ......+|+|+||+.|..... .....+++|||||||++.+.+ ..+...+.
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 76 3566666665422 112348999999999865432 223468899999999997654 23444455
Q ss_pred hcCCCCcEEEEeccCChH-HHHHH------------------------------------HHHcCCCEEEEECCcc----
Q psy12410 503 NVRPDRQTVMFSATFPRQ-MEALA------------------------------------RRILNKPIEIQVGGRS---- 541 (615)
Q Consensus 503 ~~~~~~q~l~~SAT~~~~-~~~~~------------------------------------~~~~~~p~~i~~~~~~---- 541 (615)
.++ ..+.+++|||+... ..++. ..++ .|+.+......
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~ 251 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAII 251 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHH
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchh
Confidence 553 35689999998431 22111 1111 22222111110
Q ss_pred cccCCeEEEEEecC--h-------------------------------------------------------hHHHHHHH
Q psy12410 542 VVCKEVEQHVIVLD--E-------------------------------------------------------EQKMLKLL 564 (615)
Q Consensus 542 ~~~~~i~~~~~~~~--~-------------------------------------------------------~~k~~~l~ 564 (615)
...+......+.++ . ..|...+.
T Consensus 252 ~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 252 NDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTM 331 (500)
T ss_dssp TTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHH
T ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHH
Confidence 01111122222221 1 23344445
Q ss_pred HHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcC-CCcEEEEcCCCChhhhhc
Q psy12410 565 ELLGIY-QDQGSVIVFVDKQENADSLLFHSMDP-CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 565 ~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~-g~~~~~lhg~~~~~eR~~ 614 (615)
+++... ..+.++||||++...++.|+..|... |+.+..+||++++.+|+.
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~ 383 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 383 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHH
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHH
Confidence 555543 34679999999999999999999875 999999999999999875
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.84 E-value=6.8e-21 Score=221.32 Aligned_cols=159 Identities=15% Similarity=0.076 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHc--CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMS--GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~--~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. +...++|||||+ .|+.|+..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 4799999999998885 4588999999999999987777666533 224479999999 99999988886654
Q ss_pred hcCcEEEEEEcCCChhHHHH---HHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcH--HHHHH
Q psy12410 425 SLGLRVVCVYGGTGISEQIS---ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFE--PQVMR 499 (615)
Q Consensus 425 ~~~~~~~~~~g~~~~~~~~~---~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~--~~~~~ 499 (615)
++.+.++.|+... .... ......+|+|+|++.|...... ........+++|||||||++.+.+.. ..+..
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 5666665543211 1111 1112369999999888532110 00123457899999999999754421 11222
Q ss_pred HHHhcCCCCcEEEEeccCC
Q psy12410 500 IIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 500 i~~~~~~~~q~l~~SAT~~ 518 (615)
+.........++++|||+.
T Consensus 299 l~~L~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPE 317 (968)
T ss_dssp HHHHHTTCSSEEESCSSCS
T ss_pred HHHHhhcCCcEEEEEcCCc
Confidence 2222223456999999984
No 75
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.82 E-value=6.4e-19 Score=190.17 Aligned_cols=254 Identities=17% Similarity=0.137 Sum_probs=181.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 344 QNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 344 ~~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|+ .|++.|..+.-++..|+ |+.+.||+|||+++.+|++-..+ .|..|.||+||..||.|-++++..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL--------~G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL--------IGKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh--------cCCceEEEeccHHHHHhHHHHHHHHH
Confidence 354 79999999999888888 99999999999999999986654 36669999999999999999999999
Q ss_pred hhcCcEEEEEEcC--------------------------------------------------CChhHHHHHHhcCCcEE
Q psy12410 424 KSLGLRVVCVYGG--------------------------------------------------TGISEQISELKRGAEII 453 (615)
Q Consensus 424 ~~~~~~~~~~~g~--------------------------------------------------~~~~~~~~~l~~~~~Ii 453 (615)
..+|+.+++++.. ....+ ...... |+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~aY~-~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEAYL-CDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHHHH-SSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHHhc-CCCE
Confidence 9999999999972 11111 122222 8999
Q ss_pred EEChHHH-HHHHHhcCC---CcccCCCccEEEEccccccc-cCC---------------cHHHHHHHHHhc---------
Q psy12410 454 VCTPGRM-IDMLAANSG---RVTNLRRVTYIVLDEADRMF-DMG---------------FEPQVMRIIDNV--------- 504 (615)
Q Consensus 454 v~Tp~~l-~~~l~~~~~---~~~~l~~~~~lVvDEah~~~-~~~---------------~~~~~~~i~~~~--------- 504 (615)
++|..-| .++|..+-. ...-...+.|.||||+|.++ |.. ....+..+...+
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9999877 345543311 11124678899999999654 310 001111111111
Q ss_pred -----------------------------------------------CCC------------------------------
Q psy12410 505 -----------------------------------------------RPD------------------------------ 507 (615)
Q Consensus 505 -----------------------------------------------~~~------------------------------ 507 (615)
..+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 000
Q ss_pred -------------------------------CcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEE-EEEecC
Q psy12410 508 -------------------------------RQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQ-HVIVLD 555 (615)
Q Consensus 508 -------------------------------~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~-~~~~~~ 555 (615)
.++.+||+|...+...|...|..+ .+.++. ..+...+.+ .++...
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEec
Confidence 458999999998877776655433 233332 233333433 345677
Q ss_pred hhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhh
Q psy12410 556 EEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQ 613 (615)
Q Consensus 556 ~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~ 613 (615)
...|+..++..+... ..+.++||||+|+..|+.|+..|...|+++..|||++.+.+|.
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ 514 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHH
Confidence 888999988888754 3467999999999999999999999999999999996666553
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.2e-19 Score=202.40 Aligned_cols=252 Identities=17% Similarity=0.196 Sum_probs=164.3
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIM----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..|+|+|.+++..++ .+.++|++.+||+|||++++..+...+... .....+||||| ..|+.|+..+|.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 379999999998776 789999999999999998766554443222 22445899999 67789999999999
Q ss_pred hhhcCcEEEEEEcCCChhHHHHHHh------------cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 423 TKSLGLRVVCVYGGTGISEQISELK------------RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 423 ~~~~~~~~~~~~g~~~~~~~~~~l~------------~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
+. ++.+++++|+......+.... ..++|+|+|++.+...... .....+.+|||||||++.+
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGGGGCC
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhhhhcC
Confidence 75 467777776654443333221 2378999999999765432 2223578999999999965
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEeccCC----hHHHHHHHHHcCC-----------------------------CEEEEE
Q psy12410 491 MGFEPQVMRIIDNVRPDRQTVMFSATFP----RQMEALARRILNK-----------------------------PIEIQV 537 (615)
Q Consensus 491 ~~~~~~~~~i~~~~~~~~q~l~~SAT~~----~~~~~~~~~~~~~-----------------------------p~~i~~ 537 (615)
.. ..+...+..+. ....+++|||+. .++..++..+... |+.+..
T Consensus 382 ~~--s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 382 AE--SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp SS--SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred ch--hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 43 23344444443 334688999983 2233233222111 111110
Q ss_pred CCcccc--cCCeEEEEEecC------------------------------------------------------------
Q psy12410 538 GGRSVV--CKEVEQHVIVLD------------------------------------------------------------ 555 (615)
Q Consensus 538 ~~~~~~--~~~i~~~~~~~~------------------------------------------------------------ 555 (615)
...... .+.....++.+.
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 000000 011111111111
Q ss_pred ---------------hhHHHHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 556 ---------------EEQKMLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 556 ---------------~~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...|+..|..+|..+. .+.++||||+....++.|...|...|+.+..|||+++..+|+.
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~ 613 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 613 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHH
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 1234555666666543 3569999999999999999999999999999999999999975
No 77
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=3.7e-19 Score=173.51 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|+++|.+++..++.+.++|+++|||+|||++++.++... +..+||++|+++|+.|+.+.+..|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999988776542 456999999999999998888774
Q ss_pred CcE-EEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 427 GLR-VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 427 ~~~-~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
++. +..+.|+... ..+|+|+||+.+...+.. ....+.+|||||||++.+..+. .++..++
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~~~----~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYV----QIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTTHH----HHHHTCC
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChHHH----HHHHhcc
Confidence 677 7777776532 479999999998765542 1345899999999999866543 3455544
Q ss_pred CCCcEEEEeccCChH
Q psy12410 506 PDRQTVMFSATFPRQ 520 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~ 520 (615)
..++|+||||+++.
T Consensus 218 -~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 -APFRLGLTATFERE 231 (237)
T ss_dssp -CSEEEEEEESCC--
T ss_pred -CCEEEEEecCCCCC
Confidence 67899999999754
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=3.8e-18 Score=190.52 Aligned_cols=160 Identities=17% Similarity=0.214 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q psy12410 348 KPTPIQAQAIPAIM---------SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKE 418 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~---------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 418 (615)
.|+|+|.+++..+. .+..+|+..+||+|||++++..+...+ .+.+........+|||||+ .|+.||..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~-~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL-KQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH-HCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH-HhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 69999999999874 456789999999999999766655444 3321111223569999997 788999999
Q ss_pred HHHhhhhcCcEEEEEEcCCChhH--HHHHHhc------CCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 419 AKKFTKSLGLRVVCVYGGTGISE--QISELKR------GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~l~~------~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
+.+++.. .+.++.++||..... ....... ..+|+|+|++.|...... .....+++|||||||++.+
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcCCccEEEEECceecCC
Confidence 9999876 566777777653221 1122211 378999999998764321 2335688999999999976
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 491 MGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 491 ~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
.. ......+..+. ....|++|||+-
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPi 231 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPI 231 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcc
Confidence 43 22333334444 345799999974
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.62 E-value=1.5e-15 Score=166.53 Aligned_cols=130 Identities=19% Similarity=0.097 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q psy12410 348 KPTPIQAQAIPA----IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFT 423 (615)
Q Consensus 348 ~~~~~Q~~~i~~----i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 423 (615)
.|+|.|.+++.. +..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+.+.+..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 789999997765 4578999999999999999999999972 6789999999999999999999987
Q ss_pred hhcCcEEEEEEcCCC---------------------------------hhHHH------------------HHHhcCCcE
Q psy12410 424 KSLGLRVVCVYGGTG---------------------------------ISEQI------------------SELKRGAEI 452 (615)
Q Consensus 424 ~~~~~~~~~~~g~~~---------------------------------~~~~~------------------~~l~~~~~I 452 (615)
...+++++++.|... ..... .....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 777888888876321 11211 122345899
Q ss_pred EEEChHHHHHHHHhcCCCcccCCCccEEEEcccccccc
Q psy12410 453 IVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 453 iv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~ 490 (615)
||+|+..|.+.+.... ...+....+|||||||.|.+
T Consensus 152 VV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 9999999988765432 11224678999999999886
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.53 E-value=1.5e-13 Score=153.25 Aligned_cols=101 Identities=20% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcc
Q psy12410 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQE 584 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~ 584 (615)
...|+++||||+++..... ....+...+........ . +.......+...|+..|... ..+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-L---VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-e---EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3578999999998643211 11111111111111111 1 11222233444554555433 35679999999999
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 585 NADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 585 ~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.|+.|+..|...|+.|..+||+|++.+|..
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQA 480 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHH
Confidence 999999999999999999999999999975
No 81
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.51 E-value=1.7e-14 Score=157.70 Aligned_cols=130 Identities=23% Similarity=0.226 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHH----HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 345 NYEKPTPIQAQAIPA----IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 345 ~~~~~~~~Q~~~i~~----i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
|| .|+|+|.+++.. +..++++++.+|||+|||++|++|++.. ++++||++||++|+.|+++.+.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 56 899999998654 4588999999999999999999999764 5789999999999999988777
Q ss_pred HhhhhcCcEEEEEEcCCCh--------h---------------------------HH------------HHHHhcCCcEE
Q psy12410 421 KFTKSLGLRVVCVYGGTGI--------S---------------------------EQ------------ISELKRGAEII 453 (615)
Q Consensus 421 ~~~~~~~~~~~~~~g~~~~--------~---------------------------~~------------~~~l~~~~~Ii 453 (615)
.+ +++++.+.|.... . .. ......+++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 64 4555554432210 0 00 00112347999
Q ss_pred EEChHHHHHHHHhcCCC----cccCCCccEEEEcccccccc
Q psy12410 454 VCTPGRMIDMLAANSGR----VTNLRRVTYIVLDEADRMFD 490 (615)
Q Consensus 454 v~Tp~~l~~~l~~~~~~----~~~l~~~~~lVvDEah~~~~ 490 (615)
|||+..|.+.+...... ...+....+|||||||.|.+
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 99999998754432100 00245678999999999843
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.42 E-value=3.2e-12 Score=142.49 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=65.8
Q ss_pred CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhcc-CCCCcEEEEeCCcc
Q psy12410 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIY-QDQGSVIVFVDKQE 584 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~ 584 (615)
...|+++||||+++..... ....+...+.......+ . +.......+...|+..|... ..+.++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 3689999999998653221 12222222221111111 1 11122233444454545433 35679999999999
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 585 NADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 585 ~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.|+.|+..|...|++|..+||++++.+|..
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~ 486 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIE 486 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHH
Confidence 999999999999999999999999999975
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.35 E-value=1.2e-12 Score=144.59 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHH----HHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPA----IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~----i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..|+|.|.+++.. +..|+++++.||||+|||++|++|++.++.. .++++||++||++|+.|+.+.+..+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 3689999998854 5589999999999999999999999998754 2678999999999999999999999
Q ss_pred hhhcCcEEEEEEcC
Q psy12410 423 TKSLGLRVVCVYGG 436 (615)
Q Consensus 423 ~~~~~~~~~~~~g~ 436 (615)
....+++++.++|+
T Consensus 75 ~~~~~~~~~~l~gr 88 (620)
T 4a15_A 75 SSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHSCCCEEECCCH
T ss_pred hhccCeEEEEEECC
Confidence 88777777776663
No 84
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=9.6e-10 Score=121.39 Aligned_cols=144 Identities=24% Similarity=0.284 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchh--HHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcC
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKT--VAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLG 427 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 427 (615)
++.|..|++.++.++.+++.|++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4566666654311 2367899999999999999888887766554
Q ss_pred cEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCCC
Q psy12410 428 LRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPD 507 (615)
Q Consensus 428 ~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~ 507 (615)
+...... +.. .....+ ..++-.+|+.. . +.... .....+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~~~-~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQKK-RIP--EDASTL---HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCCCC-SCS--CCCBTT---TSCC-------------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHHHh-ccc--hhhhhh---HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 3211110 000 000000 11222233221 1 11111 122378999999999 554 56788889999989
Q ss_pred CcEEEEe
Q psy12410 508 RQTVMFS 514 (615)
Q Consensus 508 ~q~l~~S 514 (615)
.|+|++.
T Consensus 290 ~~liLvG 296 (608)
T 1w36_D 290 ARVIFLG 296 (608)
T ss_dssp CEEEEEE
T ss_pred CEEEEEc
Confidence 9999986
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.77 E-value=8.5e-09 Score=96.35 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=63.3
Q ss_pred HHHcCCCEEEEECCcccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcC
Q psy12410 526 RRILNKPIEIQVGGRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPA 605 (615)
Q Consensus 526 ~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg 605 (615)
..|+.+|+.|.++....+..+|.|.++.++...|...|..+|... .+++||||+++..|+.|+..|...|+.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 468889999998888888889999999999999999999999864 458999999999999999999999999999999
Q ss_pred CCChhhhhc
Q psy12410 606 GITRFIWQW 614 (615)
Q Consensus 606 ~~~~~eR~~ 614 (615)
+|++.+|..
T Consensus 87 ~~~~~~R~~ 95 (191)
T 2p6n_A 87 GKDQEERTK 95 (191)
T ss_dssp TSCHHHHHH
T ss_pred CCCHHHHHH
Confidence 999999975
No 86
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=87.23 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=58.6
Q ss_pred ccccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 541 SVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 541 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
..+..+|.|.++.++...|...|..+|......+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHH
Confidence 34567899999999999999999999998766789999999999999999999999999999999999999875
No 87
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.45 E-value=3.6e-07 Score=82.91 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=64.9
Q ss_pred cccCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 542 VVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 542 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
....+|.|.++.++...|...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 44567999999999999999999999875 4568999999999999999999999999999999999999975
No 88
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.45 E-value=3.3e-07 Score=83.96 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=63.1
Q ss_pred cCCeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 544 CKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 544 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
...|.|+++.++...|...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 457899999999999999999999876 4579999999999999999999999999999999999999975
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=5.1e-07 Score=82.90 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=63.4
Q ss_pred ccCCeEEEEEecChhH-HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 543 VCKEVEQHVIVLDEEQ-KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 543 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+..+|.|.++.++... |...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 4578999999998655 999999988775 4679999999999999999999999999999999999999975
No 90
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.37 E-value=6.5e-06 Score=91.73 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIMSGRD-LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..+++-|.+|+..++..++ .||+||.|||||.+.+- ++.+++.. +.+||+++||...|..+.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3689999999999887665 68889999999998443 44444443 668999999999999997776543
No 91
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.33 E-value=5.9e-05 Score=84.12 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
..+++-|.+|+.. ....++|.|+.|||||.+.+--+.. ++... ......+|+|++|+.+|.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~-l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAW-LMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHH-HHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHH-HHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999973 3677999999999999985444443 33321 12235799999999999999998888754
No 92
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.32 E-value=7.4e-07 Score=80.96 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=60.7
Q ss_pred CCeEEEEEecChhH-HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 545 KEVEQHVIVLDEEQ-KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 545 ~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+|.|.++.++... |...|..++... ..+++||||+++..|+.++..|...|+.+..+||+|++.+|..
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 46888888888776 999999998875 4679999999999999999999999999999999999999975
No 93
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.31 E-value=1.7e-06 Score=94.55 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..+++.|..++..++.+..+++.|+.|+|||.+.. .++..+.. .+..+++++||..+|..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 47899999999999999999999999999998732 33333332 3567999999999887765432
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcCC
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 506 (615)
+.....++ .+. .+.. + .+... ......+++||||||+.+. ...+..++..++.
T Consensus 253 ~~~a~Tih----------~ll---~~~~-~------~~~~~---~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 253 GRTASTVH----------RLL---GYGP-Q------GFRHN---HLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPP 305 (574)
T ss_dssp TSCEEEHH----------HHT---TEET-T------EESCS---SSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCT
T ss_pred cccHHHHH----------HHH---cCCc-c------hhhhh---hcccccCCEEEEcCccCCC----HHHHHHHHHhCcC
Confidence 21111110 110 0000 0 00001 1233467899999999654 5567777787877
Q ss_pred CCcEEEEe
Q psy12410 507 DRQTVMFS 514 (615)
Q Consensus 507 ~~q~l~~S 514 (615)
..++|++.
T Consensus 306 ~~~lilvG 313 (574)
T 3e1s_A 306 GARVLLVG 313 (574)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77777764
No 94
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.31 E-value=4.9e-06 Score=92.18 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
+..+++.|..|+..++.+.-+++.||+|+|||.+.. .++.++... .+.++|+++||...|.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 457899999999999988888999999999999743 344454432 3668999999999999997776553
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.31 E-value=2.5e-06 Score=91.06 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=80.7
Q ss_pred HCCCCCCCHHHHHHHHHHHcC-----CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHH
Q psy12410 343 KQNYEKPTPIQAQAIPAIMSG-----RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGK 417 (615)
Q Consensus 343 ~~~~~~~~~~Q~~~i~~i~~~-----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 417 (615)
-+.|..|++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++... ....+++++||..+|..+..
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc------CCceEEEecCcHHHHHHHHh
Confidence 345788999999999977532 38999999999999763 4455555443 12469999999988876654
Q ss_pred HHHHhhhhcCcEEEEEEcCCChhHHHHHHh----cCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCc
Q psy12410 418 EAKKFTKSLGLRVVCVYGGTGISEQISELK----RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGF 493 (615)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~ 493 (615)
.+ ++.+..+++ +..+. .....+... ....+..+++||||||+.+.
T Consensus 93 ~~-------~~~~~T~h~-------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~iiiDE~~~~~---- 141 (459)
T 3upu_A 93 LS-------GKEASTIHS-------ILKINPVTYEENVLFEQK-------------EVPDLAKCRVLICDEVSMYD---- 141 (459)
T ss_dssp HH-------SSCEEEHHH-------HHTEEEEECSSCEEEEEC-------------SCCCCSSCSEEEESCGGGCC----
T ss_pred hh-------ccchhhHHH-------HhccCcccccccchhccc-------------ccccccCCCEEEEECchhCC----
Confidence 33 221111110 00000 000111110 11345678999999999553
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q psy12410 494 EPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 494 ~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+..++..+....+++++.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEC
Confidence 455666666666566666554
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-05 Score=91.14 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
+..+++.|..|+..++.+.-+++.||.|+|||.+..- ++.++... .+.++|+++||...|.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999998887889999999999987433 33444321 2567999999999999998877764
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.20 E-value=7.9e-06 Score=92.49 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 346 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 346 ~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
...+++.|..|+..++.+.-+++.||.|+|||.+.. .++.++... .+.++|+++||...|.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999999988888999999999998743 444555432 3568999999999999987776553
No 98
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.07 E-value=4.8e-06 Score=83.18 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=62.1
Q ss_pred CeEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 546 EVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 546 ~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
.+.+.++.+....|...|..++.... .+++||||+++..|+.|+..|...|+.+..+||+|++.+|+.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERER 69 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 46788888999999999999988764 779999999999999999999999999999999999999875
No 99
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.18 E-value=1.2e-06 Score=80.03 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=60.3
Q ss_pred CeEEEEEecCh-hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhcC
Q psy12410 546 EVEQHVIVLDE-EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQWA 615 (615)
Q Consensus 546 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~v 615 (615)
+|.|.++.++. ..|...|..++... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 57788888877 78888888888764 45789999999999999999999999999999999999999753
No 100
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.93 E-value=8.5e-06 Score=77.21 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=59.2
Q ss_pred eEEEEEecChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCChhhhhc
Q psy12410 547 VEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 547 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~ 614 (615)
+.+..+.+....|...|..++... ..+++||||+++..++.|+..|...|+.+..+||+|++.+|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~ 72 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERER 72 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 456667778888999999998765 4679999999999999999999999999999999999999975
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.86 E-value=0.00027 Score=72.65 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
.|+|+|..++..+...+-+++..+-+.|||.+.+..++..++.. .+..++|++||...|..++..+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 78999999998876567789999999999998777676655432 36689999999999998988888877654
No 102
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.69 E-value=0.0011 Score=74.18 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhh
Q psy12410 348 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK 424 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 424 (615)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... .....+|+|+.|+.+|.++.+.+..+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 3678999999999999985544444443211 2345799999999999999998887754
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.47 E-value=0.0016 Score=71.44 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..|+|+|..++..+...+.+++..+-|+|||.+.+..++..++.. .+..++|++|+...|..++..++.+....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 368999999998876667899999999999998776666655442 25689999999999999998888887655
Q ss_pred C--cEEEEE-EcCCChhHHHHHHhcCCcEEEEC--hHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHH
Q psy12410 427 G--LRVVCV-YGGTGISEQISELKRGAEIIVCT--PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRII 501 (615)
Q Consensus 427 ~--~~~~~~-~g~~~~~~~~~~l~~~~~Iiv~T--p~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 501 (615)
+ +..... .+... ..+.+|..|.+.+ |..+.- .++.++|+||+|.+.+. ...+..+.
T Consensus 236 p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~lrG------------~~~~~~iiDE~~~~~~~--~~l~~~~~ 296 (592)
T 3cpe_A 236 PDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAVRG------------NSFAMIYIEDCAFIPNF--HDSWLAIQ 296 (592)
T ss_dssp CTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHHHH------------SCCSEEEEETGGGCTTH--HHHHHHHH
T ss_pred hHhhccccccCCccE-----EEecCCCEEEEEeCCCCCccC------------CCcceEEEehhccCCch--hHHHHHHH
Confidence 3 111111 11110 0122455555432 433311 13578999999977542 23334444
Q ss_pred HhcC--CCCcEEEEeccCC
Q psy12410 502 DNVR--PDRQTVMFSATFP 518 (615)
Q Consensus 502 ~~~~--~~~q~l~~SAT~~ 518 (615)
..+. ++.+++++| |+.
T Consensus 297 ~~l~~~~~~~ii~is-TP~ 314 (592)
T 3cpe_A 297 PVISSGRRSKIIITT-TPN 314 (592)
T ss_dssp HHHSSSSCCEEEEEE-CCC
T ss_pred HHhccCCCceEEEEe-CCC
Confidence 4443 334444443 443
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.15 E-value=0.0016 Score=59.42 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEccCCCchhHHhH
Q psy12410 350 TPIQAQAIPAIM---------SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 350 ~~~Q~~~i~~i~---------~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.|..++..+. .|..+++.||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665543 46789999999999998743
No 105
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.09 E-value=0.0023 Score=66.71 Aligned_cols=132 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc-C-cHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS-P-TRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~-P-tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
.-++++|++|+|||++....+... .. .+.+++++. + .+..+. +.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l-~~-------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY-KK-------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH-HH-------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccC----
Confidence 346778999999999755433322 22 244555544 3 343332 234445555555443322111
Q ss_pred HHHHHhcCCcEEEEChHHHH-HHHHhcCCCcccCCCccEEEEccccccc---cCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 442 QISELKRGAEIIVCTPGRMI-DMLAANSGRVTNLRRVTYIVLDEADRMF---DMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 442 ~~~~l~~~~~Iiv~Tp~~l~-~~l~~~~~~~~~l~~~~~lVvDEah~~~---~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
.|..+. ..+.. .....+++||||.+-++. +..+..++..+...+.++.-+++++|+.
T Consensus 163 --------------dp~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 163 --------------NPIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --------------CHHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --------------CHHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 122221 22222 123468899999998643 3446677888888887777788888887
Q ss_pred ChHHHHHHHHHc
Q psy12410 518 PRQMEALARRIL 529 (615)
Q Consensus 518 ~~~~~~~~~~~~ 529 (615)
.......+..|.
T Consensus 224 gq~a~~~a~~f~ 235 (433)
T 3kl4_A 224 GQKAYDLASRFH 235 (433)
T ss_dssp GGGGHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 666555555554
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00079 Score=63.73 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
|.-+++.|++|+|||++.+-.+.++. ..+.+++|+.|...-- ....++..+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--------~~g~kVli~~~~~d~r-----~~~~i~srlG~~~------------ 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--------YADVKYLVFKPKIDTR-----SIRNIQSRTGTSL------------ 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEEECCCGG-----GCSSCCCCCCCSS------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--------hcCCEEEEEEeccCch-----HHHHHHHhcCCCc------------
Confidence 45578889999999998655554443 2356788887753200 0011222222211
Q ss_pred HHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccc
Q psy12410 443 ISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~ 489 (615)
..+.+.+...+...+... ..-..+++||||||+.+.
T Consensus 67 -------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGSC
T ss_pred -------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccCc
Confidence 123355666666666532 112457899999999653
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.89 E-value=0.0016 Score=67.63 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=52.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS 444 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 444 (615)
-.++.|+.|+|||... ...+ . ...++|++||++++..+.+.+... +. .
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~-~--------~~~~lVlTpT~~aa~~l~~kl~~~----~~--------~------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRV-N--------FEEDLILVPGRQAAEMIRRRANAS----GI--------I------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHC-C--------TTTCEEEESCHHHHHHHHHHHTTT----SC--------C-------
T ss_pred EEEEEcCCCCCHHHHH----HHHh-c--------cCCeEEEeCCHHHHHHHHHHhhhc----Cc--------c-------
Confidence 4578899999999873 2222 1 124699999999998876655322 11 0
Q ss_pred HHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC
Q psy12410 445 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG 492 (615)
Q Consensus 445 ~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~ 492 (615)
....+-|.|.+.++. ... ......+++||||||- |++.+
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~--~~~~~~~d~liiDE~s-m~~~~ 249 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYG--KGARCQFKRLFIDEGL-MLHTG 249 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTT--SSCCCCCSEEEEETGG-GSCHH
T ss_pred ---ccccceEEEeHHhhc---CCC--CCCCCcCCEEEEeCcc-cCCHH
Confidence 012334678766543 110 0112247899999998 55443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.86 E-value=0.0034 Score=57.55 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=27.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
.|+-.++.|++|+|||+.++-.+.++. ..+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~--------~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK--------LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH--------HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEeec
Confidence 355578999999999998654444443 125578898887
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0081 Score=59.97 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
.+.++++.||+|+|||++. -.++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3468999999999999874 33444443
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.81 E-value=0.0018 Score=59.71 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|+=.+++|++|+|||+..+-.+.++. ..+.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~--------~~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK--------IAKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--------HTTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEec
Confidence 44468889999999988665555553 236779999987
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.71 E-value=0.011 Score=61.69 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=34.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc--CcHHHHHHHHHHHHHhhhhcCcEEEEE
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS--PTRELCMQIGKEAKKFTKSLGLRVVCV 433 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~ 433 (615)
-++++|++|+|||++..-.+. ++.. .|.+++++. |.+..+. +.+..++...++.+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEec
Confidence 478889999999998554333 2322 244555554 4444443 33556666667765543
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.59 E-value=0.0012 Score=58.35 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+..+++.||+|+|||..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998743
No 113
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.53 E-value=0.0014 Score=64.15 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=52.9
Q ss_pred cChhHHHHHHHHHHhcc-CCCCcEEEEeCCcchHHHHHHHhhcC-CCcEEEEcCCCChhhhhc
Q psy12410 554 LDEEQKMLKLLELLGIY-QDQGSVIVFVDKQENADSLLFHSMDP-CLEFLPLPAGITRFIWQW 614 (615)
Q Consensus 554 ~~~~~k~~~l~~~l~~~-~~~~~~LIF~~s~~~a~~l~~~L~~~-g~~~~~lhg~~~~~eR~~ 614 (615)
+....|...|..+|... ..+.++||||++...++.|...|... |+.+..|||++++.+|+.
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 45677888888888765 34679999999999999999999884 999999999999999975
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.52 E-value=0.0046 Score=67.56 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 348 KPTPIQAQAIPAIMS--GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 348 ~~~~~Q~~~i~~i~~--~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+- .+. ..++|++|+.+.+..+.+ ++..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~----------~~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA----------GRAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS----------SCEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH----------hCcEEECCCHHHHHHHHH----HhhC
Confidence 689999999998885 33468889999999966444333 321 126999999887654332 2211
Q ss_pred cCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhcC
Q psy12410 426 LGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505 (615)
Q Consensus 426 ~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 505 (615)
.|-+..|..+.. .+..+++||||||=.+. .+.+..++...+
T Consensus 240 -------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~ll~~~~ 280 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQLVSRFP 280 (671)
T ss_dssp -------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHHHTTSS
T ss_pred -------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHHHhhCC
Confidence 134456755431 13458899999999776 777777776443
Q ss_pred CCCcEEEEeccCC
Q psy12410 506 PDRQTVMFSATFP 518 (615)
Q Consensus 506 ~~~q~l~~SAT~~ 518 (615)
.|+||.|..
T Consensus 281 ----~v~~~tTv~ 289 (671)
T 2zpa_A 281 ----RTLLTTTVQ 289 (671)
T ss_dssp ----EEEEEEEBS
T ss_pred ----eEEEEecCC
Confidence 577777753
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.49 E-value=0.0081 Score=56.55 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
|+=.+++|++|+|||...+-.+.++. ..+.+++|+.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 55568889999999998766666665 4477899998864
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.43 E-value=0.0032 Score=58.75 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
+=.+++|++|+|||+..+-.+.++. ..+.+++|+.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEeccC
Confidence 3356889999999998766666664 33667999998753
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.21 E-value=0.0047 Score=57.49 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=27.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
.|.=.+++|++|+|||...+-.+.++. ..+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~--------~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI--------YAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH--------HTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--------HcCCceEEEEecc
Confidence 345568889999999987554554443 2356789999864
No 118
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.19 E-value=0.04 Score=50.50 Aligned_cols=140 Identities=16% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH-HHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE-LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
-.+++..++|.|||.+++-.++..+ +.|-+|+|+.-... .-..-...+..+ ++.+...--+-....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 4688889999999999888888776 45778888843221 000001112222 3333322111111110
Q ss_pred HHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC--cHHHHHHHHHhcCCCCcEEEEeccCChH
Q psy12410 443 ISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG--FEPQVMRIIDNVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~q~l~~SAT~~~~ 520 (615)
... .++.. --..+...... ..-..+++|||||+-..+..+ -...+..++...+...-+|+++--.|+.
T Consensus 97 ~~~----~~~~~-a~~~l~~a~~~-----l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 97 NRE----ADTAA-CMAVWQHGKRM-----LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp GHH----HHHHH-HHHHHHHHHHH-----TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred CcH----HHHHH-HHHHHHHHHHH-----HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000 00000 01112111111 112578999999997654444 3566777777665555555555556665
Q ss_pred HHHHH
Q psy12410 521 MEALA 525 (615)
Q Consensus 521 ~~~~~ 525 (615)
+.+++
T Consensus 167 l~e~A 171 (196)
T 1g5t_A 167 ILDLA 171 (196)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 54443
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.19 E-value=0.026 Score=56.64 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999998743
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.032 Score=50.57 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
...++++|++|+|||.++
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999874
No 121
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.12 E-value=0.012 Score=66.24 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh-
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS- 425 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~- 425 (615)
..+++-|.+|+.. ....++|.|+.|||||.+..--+.+.+.... .....+|+|+.|+.+|.++.+.+..+...
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999999875 3568999999999999985444444443221 23457999999999999999888887543
Q ss_pred -cCcEEEEE
Q psy12410 426 -LGLRVVCV 433 (615)
Q Consensus 426 -~~~~~~~~ 433 (615)
.++.+..+
T Consensus 84 ~~~~~v~Tf 92 (724)
T 1pjr_A 84 AEDVWISTF 92 (724)
T ss_dssp GTTSEEEEH
T ss_pred ccCcEEeeH
Confidence 23444443
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0065 Score=55.12 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
..++++.||+|+|||.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998743
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.09 E-value=0.0062 Score=59.93 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=31.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHH-HHHHHHH--HcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQ-AQAIPAI--MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-..|.++.-....++.|...-. .+.+ .+.+..+ .....+++.||+|+|||.++
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887766666666543210 0000 1111111 24568999999999999874
No 124
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0078 Score=61.79 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=30.8
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQ-N--YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~-~--~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|++.+--....+.|... - +..|--++...+ ---+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 445788887666666555432 0 111111111110 12378999999999999873
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.90 E-value=0.069 Score=51.96 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+++.||+|+|||.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998753
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.88 E-value=0.015 Score=58.68 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 349 PTPIQAQAIPAIM----SGR---DLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 349 ~~~~Q~~~i~~i~----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
++|+|..++..+. +|+ .+++.||.|+|||.++.. +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4577777766554 443 389999999999987543 334444
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.84 E-value=0.042 Score=57.68 Aligned_cols=41 Identities=15% Similarity=0.422 Sum_probs=24.8
Q ss_pred CccEEEEccccccccC-CcHHHHHHHHHhc-CCCCcEEEEecc
Q psy12410 476 RVTYIVLDEADRMFDM-GFEPQVMRIIDNV-RPDRQTVMFSAT 516 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~-~~~~q~l~~SAT 516 (615)
...+|||||+|.+... .....+..+++.+ ..+.++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4679999999988753 2344455555543 334555554433
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.83 E-value=0.012 Score=70.04 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 347 EKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 347 ~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..+|+-|.++|..- +.+++|.|..|||||.+.+--++..+.... .......+|||++|+.+|..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 36899999998754 889999999999999996666666554421 0113457999999999999998887763
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.80 E-value=0.064 Score=49.46 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998743
No 130
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0059 Score=63.60 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=34.5
Q ss_pred CCccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
..|-.+|.+.+-.....+.|... .+..|.-++...++ -.+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 35667899998777777666532 11122222221111 2368999999999999873
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.58 E-value=0.036 Score=48.33 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.8
Q ss_pred HcCCCEEEEccCCCchhHHhH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~ 381 (615)
..+.++++.|++|+|||+++-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466799999999999998743
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.56 E-value=0.093 Score=48.67 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEec
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SA 515 (615)
....+|||||+|.+.. .....+..++........+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567999999998753 234556666666555555555443
No 133
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.46 E-value=0.14 Score=52.65 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.+|+.||+|+|||+++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999874
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.45 E-value=0.021 Score=56.79 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.++++.||+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999998753
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.41 E-value=0.11 Score=51.08 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=29.7
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHH---------HcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAI---------MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i---------~~~~~~i~~a~TGsGKT~~~ 380 (615)
+-..|.++.-...+++.|...- .++.. ...+.+++.||+|+|||+++
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3456888766666666654320 01110 13578999999999999874
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.40 E-value=0.027 Score=51.62 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|+=.++.|++|+|||.-.+-.+-++.. .+.+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEccc
Confidence 555788999999999764444444442 25678999886
No 137
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.013 Score=61.11 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=30.4
Q ss_pred CccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 323 RPIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
.|-.+|.+.+--....+.|... .+..|--++... +---+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3455788887655555555432 011111111100 012368999999999999873
No 138
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.35 E-value=0.1 Score=52.15 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=30.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-----cCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIM-----SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~~i~~a~TGsGKT~~~ 380 (615)
|-..|.++.-...+.+.|...-. .|. ..|.++ ..+.+++.||+|+|||+++
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44568888767776666643210 000 001111 1357999999999999874
No 139
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.33 E-value=0.048 Score=54.30 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998754
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.27 E-value=0.057 Score=55.26 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
+..++++||+|+|||.+.
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999874
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.27 E-value=0.18 Score=50.42 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=29.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-----cCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIM-----SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|.+++-...+.+.|...-. .|.+ .|.++ ..+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34578888766666666542100 0000 01111 1267999999999999874
No 142
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.024 Score=58.50 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred CccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 323 RPIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
.|-.+|++.+--..+.+.|... .+..|--++...+ ---+.+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3556788887555555555432 1112222221111 11367999999999999873
No 143
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.21 E-value=0.026 Score=56.57 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEec
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SA 515 (615)
....+|||||+|.+........+..++.......++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999987622234556666666555665655443
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.017 Score=60.14 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQ---NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|.+.|--..+.+.|... .+..|--++... +--.+.+|+.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 445788887655555555321 011111111100 012367999999999999873
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.052 Score=55.65 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
...+++.||+|+|||.+.
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999874
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.02 E-value=0.018 Score=54.58 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998743
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.97 E-value=0.24 Score=48.96 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=30.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHH-HHHHH--HHcCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQA-QAIPA--IMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~--i~~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|.+++-...+.+.|...-. .|+.. +.+.. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44568888766666665543200 00000 00111 123567999999999999874
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.034 Score=57.94 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=32.4
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHH-HHHHHH--HcCCCEEEEccCCCchhHHh
Q psy12410 323 RPIKTWAQCGVSKKILDALKKQNYEKPTPIQA-QAIPAI--MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~i--~~~~~~i~~a~TGsGKT~~~ 380 (615)
.|-.+|.+.+--..+.+.|...=. .|+.. +.+..+ ---+.+|+.||.|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 345679998877776666654200 11110 111111 12368999999999999873
No 149
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.75 E-value=0.14 Score=52.12 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.+++.||+|+|||+++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998743
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.092 Score=53.15 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
....+|||||+|. ++......+..++...+....+|+.|..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 3567999999998 5454566777777776666555555544
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.62 E-value=0.49 Score=44.22 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHh
Q psy12410 365 DLIGIAKTGSGKTVAF 380 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~ 380 (615)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999874
No 152
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.51 E-value=0.17 Score=51.36 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.+|+.||+|+|||+++-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998743
No 153
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.49 E-value=0.22 Score=47.77 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356899999999999874
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.38 E-value=0.062 Score=51.77 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.+++.||+|+|||+++-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578999999999998743
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.38 E-value=0.064 Score=54.97 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12410 365 DLIGIAKTGSGKTVAF 380 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~ 380 (615)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999874
No 156
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.38 E-value=0.34 Score=44.30 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhc-CCcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKR-GAEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
++++||.++++..|..+...+... ++.+..++|+.+..+... .+.. ...|+||| +.+..+ .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCc
Confidence 457999999999999887777664 788999999987655433 3333 38999999 445544 678
Q ss_pred CCccEEEE
Q psy12410 475 RRVTYIVL 482 (615)
Q Consensus 475 ~~~~~lVv 482 (615)
..+.+||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 88888876
No 157
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.29 E-value=0.16 Score=50.94 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
.++++.||+|+|||+++
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999874
No 158
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.27 E-value=0.16 Score=53.23 Aligned_cols=38 Identities=26% Similarity=0.106 Sum_probs=24.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|++|+|||...+-.+.+.... .+..|+|+.-
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-------~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-------EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEC
Confidence 4557888999999998755544444322 2344676653
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.23 E-value=0.19 Score=52.88 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=24.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|.-+++.|++|+|||..++..+.+.... .|..|+|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-------~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-------TNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-------SSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 35568888999999998765544444322 133467665
No 160
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.23 E-value=0.22 Score=49.12 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHH
Q psy12410 475 RRVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARR 527 (615)
Q Consensus 475 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~ 527 (615)
..+++||||++-.+. +......+..+...+.++.-++++.++........+..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999995432 22234555566666666554556777654443333443
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.22 E-value=0.18 Score=51.34 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEE
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMF 513 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~ 513 (615)
.....+|||||+|.+.. .....+..++...+....+|+.
T Consensus 117 ~~~~~vliiDe~~~l~~-~~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCH-HHHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcH-HHHHHHHHHHhcCCCceEEEEE
Confidence 34567999999998752 2234455555554444433333
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.14 E-value=0.22 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
.+..++++|++|+|||+.....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35668889999999998755444
No 163
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.07 E-value=0.15 Score=45.30 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=53.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.++++..|..+...+... ++.+..++|+.+...... .+..| ..|+||| +.+..+ .++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G----ld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAARG----IDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTTT----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----ChhhcC----Cch
Confidence 457999999999999887777664 788999999987655433 33334 7899999 334433 677
Q ss_pred CCccEEEEcc
Q psy12410 475 RRVTYIVLDE 484 (615)
Q Consensus 475 ~~~~~lVvDE 484 (615)
..+.+||.-.
T Consensus 102 ~~~~~Vi~~~ 111 (163)
T 2hjv_A 102 ENISLVINYD 111 (163)
T ss_dssp SCCSEEEESS
T ss_pred hcCCEEEEeC
Confidence 8888888643
No 164
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.93 E-value=0.059 Score=57.30 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=28.9
Q ss_pred ccEEEEccccccccCC----------cHHHHHHHHHhcCCCCcEEEEeccCCh
Q psy12410 477 VTYIVLDEADRMFDMG----------FEPQVMRIIDNVRPDRQTVMFSATFPR 519 (615)
Q Consensus 477 ~~~lVvDEah~~~~~~----------~~~~~~~i~~~~~~~~q~l~~SAT~~~ 519 (615)
-.+|+|||+|.+.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3589999999886421 224455556666666678888888765
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.84 E-value=0.088 Score=55.28 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+|+.||+|+|||.++-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998743
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.81 E-value=0.27 Score=46.55 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=29.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 420 (615)
.|.-+++.|++|+|||..++..+...+ . .+..++|+.-. ....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~-------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K-------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H-------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h-------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 456789999999999997544444333 2 13446666532 22344444443
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.76 E-value=0.18 Score=45.32 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=52.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++..|..++..+.. .++.+..++|+.+...... .+..| ..|+|||. .+..+ .+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id 99 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----ID 99 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CC
Confidence 356899999999999888776655 3788999999987665533 33333 79999993 33332 67
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 100 ~~~~~~Vi~ 108 (175)
T 2rb4_A 100 VKQVTIVVN 108 (175)
T ss_dssp CTTEEEEEE
T ss_pred cccCCEEEE
Confidence 888888885
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.74 E-value=0.15 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
.|.-+++.||+|+|||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 35678899999999998654333
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.70 E-value=0.17 Score=51.49 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998743
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.53 E-value=0.57 Score=50.09 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=26.7
Q ss_pred CCccEEEEccccccccC--CcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 475 RRVTYIVLDEADRMFDM--GFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~--~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
....+|||||+|.+... ++...+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34568999999988642 2345566666553 44577777764
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.24 Score=49.13 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
....+|||||+|.+... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999987532 3455666666655555455443
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.40 E-value=0.68 Score=46.00 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=24.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
|.-+++.|++|+|||..++..+.+.+ . .+..++|+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a-~-------~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS-D-------NDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEE
Confidence 45688999999999987554444443 2 234577776
No 173
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.33 E-value=0.25 Score=43.84 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=53.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.++++..|..+...+... ++.+..++|+.+...... .+..| ..|+||| +.+..+ .++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G----~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLARG----IDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----ChhhcC----CCc
Confidence 567999999999998887776654 788999999987655433 33333 7999999 333333 677
Q ss_pred CCccEEEEcc
Q psy12410 475 RRVTYIVLDE 484 (615)
Q Consensus 475 ~~~~~lVvDE 484 (615)
..+.+||.-.
T Consensus 97 ~~~~~Vi~~~ 106 (165)
T 1fuk_A 97 QQVSLVINYD 106 (165)
T ss_dssp CSCSEEEESS
T ss_pred ccCCEEEEeC
Confidence 7888887643
No 174
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.27 E-value=0.39 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
.-+++++++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3467889999999987543
No 175
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.17 E-value=0.62 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
+.-+++++++|+|||++....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3446777999999998755433
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.06 E-value=0.16 Score=51.19 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=24.7
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
....+|||||+|.+... ....+..++........+|+++
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999987632 2455666666655555455544
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.06 E-value=0.13 Score=54.27 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999874
No 178
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.91 E-value=0.25 Score=46.06 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH---HhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE---LKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.|+++.-+..++..+... ++.+..++|+.+....... +..| ..|+||| +.+..+ .++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G----idi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARG----LDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCS----SSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcC----CCC
Confidence 557999999999998887777664 7889999999886665433 3344 7899999 334433 678
Q ss_pred CCccEEEE
Q psy12410 475 RRVTYIVL 482 (615)
Q Consensus 475 ~~~~~lVv 482 (615)
..+.+||.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 88888874
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.86 E-value=0.38 Score=47.62 Aligned_cols=42 Identities=10% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
+....+|||||||.|-.. -...+.+++..-++.. ++++.++-
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t-~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYA-VIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTE-EEEEEESC
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCe-EEEEEECC
Confidence 456789999999987522 2344555555444344 33344443
No 180
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.76 E-value=0.19 Score=61.54 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHc------CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcH
Q psy12410 357 IPAIMS------GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTR 409 (615)
Q Consensus 357 i~~i~~------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 409 (615)
+..++. ++++++++|+|+|||..++..+.... ..|.+++|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--------~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEccc
Confidence 666665 68999999999999998655555443 3466788887653
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.68 E-value=0.29 Score=48.66 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
...+++.||+|+|||.++
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999874
No 182
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.59 E-value=0.2 Score=52.58 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.+.+|+.||+|+|||+++
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999874
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.52 E-value=0.25 Score=49.52 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|++|+|||..++-.+.+... .+..|+|+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--------~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--------DDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--------TTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeC
Confidence 445788899999999876554544432 2456777753
No 184
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.50 E-value=0.14 Score=50.94 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=24.0
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
...+|||||+|.+... ....+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999987632 2344556666655555555544
No 185
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.47 E-value=0.64 Score=46.45 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=38.8
Q ss_pred CccEEEEccccccc-cCCcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHHc
Q psy12410 476 RVTYIVLDEADRMF-DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 476 ~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
..+++++|-+-++- +......+..+...+.++..++++.++....+...+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35678899887643 3345667777777777888888899888777777776654
No 186
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.46 E-value=0.33 Score=44.09 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=44.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++..|..+...+... ++.+..++|+.+.... +..+..| ..|+|||. .+..+ .+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CC
Confidence 4678999999999998887776653 7889999998764443 3333333 78999993 33333 56
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 112 i~~~~~VI~ 120 (185)
T 2jgn_A 112 ISNVKHVIN 120 (185)
T ss_dssp CCSBSEEEE
T ss_pred cccCCEEEE
Confidence 778888876
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.36 E-value=0.39 Score=48.29 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=25.5
Q ss_pred CCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 475 RRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
....++||||+|.|.. .....+..++...+....+|+++
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3578999999998753 23455666777665555555443
No 188
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.94 E-value=0.067 Score=52.79 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999874
No 189
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.81 E-value=1.2 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
.|.-+++.|++|+|||......+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 466788999999999987554333
No 190
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.78 E-value=1.4 Score=39.28 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.|+++..|..++..+... ++.+..++|+.+..+... .+..| ..|+|||. .+..+ .++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT----CCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC----cch
Confidence 557999999999999887777664 788999999987665433 33333 89999993 23322 667
Q ss_pred CCccEEEEcc
Q psy12410 475 RRVTYIVLDE 484 (615)
Q Consensus 475 ~~~~~lVvDE 484 (615)
..+.+||.=.
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 7788887643
No 191
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.72 E-value=1.4 Score=42.62 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.2
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
..|.-+++.|++|+|||+.+...+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567789999999999987554443
No 192
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.70 E-value=0.31 Score=49.75 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
..+++++||+|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998743
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.69 E-value=0.92 Score=45.88 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
++.+++.||+|+|||.++-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999998743
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.60 E-value=0.4 Score=45.46 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=26.8
Q ss_pred CCccEEEEcccccccc-----CCcHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 475 RRVTYIVLDEADRMFD-----MGFEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~-----~~~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
....+||+||.-.+++ ......+..++..+...-.+|+++.-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4567999999987765 3334446666665543233566655443
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.46 E-value=0.46 Score=54.30 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
..+++++||+|+|||.+.-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999998743
No 196
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.30 E-value=1.2 Score=48.10 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=57.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.|+|+.-|..++..+...+. .++.+..++|+........ .+..| ..|||||. .+..+ .+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iD 407 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MD 407 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CC
Confidence 467899999999999999888887654 2678899999987655433 23333 89999993 44444 77
Q ss_pred CCCccEEEEccc
Q psy12410 474 LRRVTYIVLDEA 485 (615)
Q Consensus 474 l~~~~~lVvDEa 485 (615)
+..+.+||.-..
T Consensus 408 ip~v~~VI~~~~ 419 (563)
T 3i5x_A 408 FPNVHEVLQIGV 419 (563)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEECC
Confidence 888998885443
No 197
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.21 E-value=0.25 Score=55.45 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=25.9
Q ss_pred ccEEEEccccccccC------C----cHHHHHHHHHhcCCCCcEEEEeccCC
Q psy12410 477 VTYIVLDEADRMFDM------G----FEPQVMRIIDNVRPDRQTVMFSATFP 518 (615)
Q Consensus 477 ~~~lVvDEah~~~~~------~----~~~~~~~i~~~~~~~~q~l~~SAT~~ 518 (615)
-.+|+|||+|.++.. + ...++...+..+.....++++-||..
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC
Confidence 458999999988732 1 12334444555555556777777753
No 198
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.92 E-value=0.35 Score=49.81 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.1
Q ss_pred CCEEE--EccCCCchhHHh
Q psy12410 364 RDLIG--IAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~--~a~TGsGKT~~~ 380 (615)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45777 899999999874
No 199
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.86 E-value=0.34 Score=47.14 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=25.7
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHH-HHHHHHHH--cCCCEEEEccCCCchhHHh
Q psy12410 324 PIKTWAQCGVSKKILDALKKQNYEKPTPIQ-AQAIPAIM--SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 324 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i~--~~~~~i~~a~TGsGKT~~~ 380 (615)
|-.+|.+++....+.+.|...- ..|+. ..++..+- -.+.+++.||.|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456888876666666554320 11111 11222211 1244999999999999873
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.74 E-value=0.15 Score=57.18 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=33.9
Q ss_pred CCccccccccCCCHHHHHHHHHC-CCC--CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 322 PRPIKTWAQCGVSKKILDALKKQ-NYE--KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 322 p~~~~~~~~~~l~~~l~~~l~~~-~~~--~~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
..|-..|.+++....+.+.|... .+. .|.-++... +...+.+|+.||.|+|||+.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 34556799998888887777654 111 111111000 011357899999999999764
No 201
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.74 E-value=0.54 Score=49.64 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhh
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKS 425 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 425 (615)
+....+.+-||||||++..-.+ .. . +..+|||+|+...|.|++..++.|+..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~-~~---------~-~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIA-ER---------H-AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHH-HH---------S-SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCeEEEeCCCchHHHHHHHHHH-HH---------h-CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 5567889999999998733221 11 1 234899999999999999999998653
No 202
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.72 E-value=4.3 Score=44.66 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH---HhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE---LKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.|+|+..|..+...+... ++.+.+++|+....+.... +..| .+|+|||. .+..+ ++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----cc
Confidence 3678999999999998877766654 7888889988765554333 3334 89999993 34433 67
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHh
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDN 503 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 503 (615)
+..+++||+=+++...-......+...+..
T Consensus 511 ip~v~lVi~~d~d~~G~p~s~~~~iQr~GR 540 (661)
T 2d7d_A 511 IPEVSLVAILDADKEGFLRSERSLIQTIGR 540 (661)
T ss_dssp CTTEEEEEETTTTCCTTTTSHHHHHHHHHT
T ss_pred cCCCCEEEEeCcccccCCCCHHHHHHHhCc
Confidence 888999999999865422223444444443
No 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.48 E-value=8.2 Score=38.15 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=23.6
Q ss_pred cEEEEcccccccc---CCcHHHHHHHHHhcCCCCcEEEEecc
Q psy12410 478 TYIVLDEADRMFD---MGFEPQVMRIIDNVRPDRQTVMFSAT 516 (615)
Q Consensus 478 ~~lVvDEah~~~~---~~~~~~~~~i~~~~~~~~q~l~~SAT 516 (615)
-+|||||+|.+.. ..+...+..++... +... ++++++
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcC
Confidence 4899999998764 35667777666654 2343 444444
No 204
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.45 E-value=1.6 Score=47.38 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=57.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.|+|+..|..++..+..... .++.+..++|+........ .+..| ..|||||. .+..+ ++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iD 356 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MD 356 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CC
Confidence 367899999999999999888887654 2678899999987655432 33333 89999993 44444 67
Q ss_pred CCCccEEEEccc
Q psy12410 474 LRRVTYIVLDEA 485 (615)
Q Consensus 474 l~~~~~lVvDEa 485 (615)
+..+.+||.-.+
T Consensus 357 ip~v~~VI~~~~ 368 (579)
T 3sqw_A 357 FPNVHEVLQIGV 368 (579)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEcCC
Confidence 888998886544
No 205
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.44 E-value=1.1 Score=46.72 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=42.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc--CcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH-
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS--PTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE- 441 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~- 441 (615)
.+++++++|+|||++..-.+..... ..|.+|+++. |.+..+... +..+....++.+.....+.....
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~-------~~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~~~~~~~dp~~i 171 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLRE-------KHKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFFPSDVGQKPVDI 171 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-------TSCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEECCCCSSSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------hcCCeEEEEecCCCCccHHHH---HHhhcccCCeeEEeCCCCCCHHHH
Confidence 5677799999999986544443321 1144555554 444433332 33344444665543222222111
Q ss_pred ---HHHHHh-cCCcE-EEEChHHH
Q psy12410 442 ---QISELK-RGAEI-IVCTPGRM 460 (615)
Q Consensus 442 ---~~~~l~-~~~~I-iv~Tp~~l 460 (615)
.+..+. .++++ ||=||+++
T Consensus 172 ~~~~l~~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 172 VNAALKEAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCC
T ss_pred HHHHHHHHHhCCCCEEEEECCCcc
Confidence 123333 35654 45577643
No 206
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.22 E-value=0.18 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l~~ 384 (615)
..++++|++|+|||..+.-.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998755433
No 207
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.00 E-value=1.8 Score=44.45 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=54.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++..|..++..+... ++.+..++|+....+... .+..| ..|+||| +.+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----ChhhcC----CC
Confidence 4678999999999999887777664 788999999987655433 33333 7999999 455555 77
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 888888875
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.00 E-value=0.26 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
|.-+++.|++|+|||...+-.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45689999999999987554444443
No 209
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=89.91 E-value=0.52 Score=46.45 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH---HhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE---LKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.|+|+.-+..++..+.. .++.+..++|+.+....... +..| .+|+||| +.+..+ .++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~G----idi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAARG----LDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTCS----TTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhcC----ccc
Confidence 56799999999988887666654 37899999999876665433 3333 7999999 344433 678
Q ss_pred CCccEEEE
Q psy12410 475 RRVTYIVL 482 (615)
Q Consensus 475 ~~~~~lVv 482 (615)
..+.+||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 88888874
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.81 E-value=1.3 Score=43.61 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=27.9
Q ss_pred CCccEEEEccccccc--cC-CcHHHHHHHHHhcCCCCcEEEEeccCChHHHHHHHHH
Q psy12410 475 RRVTYIVLDEADRMF--DM-GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRI 528 (615)
Q Consensus 475 ~~~~~lVvDEah~~~--~~-~~~~~~~~i~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 528 (615)
..+++||||=+-++. .. .....+..+...+.++.-++++.|+........+..+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 235 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF 235 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHH
Confidence 457788888776543 10 1222333444445555556666776544444444433
No 211
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=89.57 E-value=0.43 Score=38.99 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 563 LLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 563 l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
+...+..+....+++|||.+-..+...+..|...||++..|.||+..
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 34455555566789999999999999999999999999999998754
No 212
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=89.22 E-value=4.8 Score=44.31 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=57.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHH---HhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE---LKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.|+|+..|..+...+... ++.+.+++|+....+.... +..| .+|+||| +.+..+ +++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~G----lDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLREG----LDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCTT----CCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----ChhhcC----ccC
Confidence 668999999999998877766654 7888888988765554333 4444 8999999 333333 678
Q ss_pred CCccEEEEcccccc
Q psy12410 475 RRVTYIVLDEADRM 488 (615)
Q Consensus 475 ~~~~~lVvDEah~~ 488 (615)
..+.+||+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 88999999888754
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.19 E-value=2.6 Score=44.55 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=15.5
Q ss_pred CEEEEccCCCchhHHhHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~ 384 (615)
.+++++++|+|||+.+.-.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999999754433
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.06 E-value=0.65 Score=48.85 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCccEEEEcccccccc-CCcHHHHHHH---HHhcC---CCCcEEEEeccCChHHHHHHHHHc
Q psy12410 475 RRVTYIVLDEADRMFD-MGFEPQVMRI---IDNVR---PDRQTVMFSATFPRQMEALARRIL 529 (615)
Q Consensus 475 ~~~~~lVvDEah~~~~-~~~~~~~~~i---~~~~~---~~~q~l~~SAT~~~~~~~~~~~~~ 529 (615)
..+++||||=+-++-. ......+..+ +..+. +..-+|.+.||........++.|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 3467888887765432 1122333333 33232 333367788888766555565553
No 215
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.79 E-value=0.56 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.++++||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999874
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.70 E-value=1.5 Score=41.12 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
.|.-+++.||+|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356789999999999998554443
No 217
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.40 E-value=0.34 Score=41.83 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.7
Q ss_pred HHHcCCCEEEEccCCCchhHH
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~ 379 (615)
....+.++++.|++|+|||.+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 344678999999999999976
No 218
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.35 E-value=1.6 Score=44.22 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|++|+|||..++- ++..+... +..|+|+..
T Consensus 74 G~li~I~G~pGsGKTtlal~-la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALA-IVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHH-HHHHHHHC-------CCeEEEEEC
Confidence 45688899999999987544 33333322 345666654
No 219
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.67 E-value=0.75 Score=48.11 Aligned_cols=37 Identities=14% Similarity=-0.021 Sum_probs=25.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|++|+|||..++-.+.+.+. .+..|+|+.-
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~--------~g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD--------NDDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH--------TTCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH--------cCCEEEEEEC
Confidence 455788899999999876555554442 1456777763
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.64 E-value=0.84 Score=46.05 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|.-+++.||+|+|||...+ .++..+.. .+..++|+..-
T Consensus 61 G~i~~I~GppGsGKSTLal-~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL-HAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHh-------cCCeEEEEecc
Confidence 4568889999999998643 33333322 24457777654
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.46 E-value=0.88 Score=45.34 Aligned_cols=23 Identities=22% Similarity=-0.019 Sum_probs=17.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
|.-+++.|++|+|||...+..+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHH
Confidence 46789999999999987544443
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.13 E-value=0.85 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999874
No 223
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=86.89 E-value=0.12 Score=46.21 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++..|..+...+... ++.+..++|+.+...... .+..| ..|+||| +.+..+ .+
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G----id 95 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAARG----ID 95 (170)
Confidence 3567999999999988887766654 778888999876544322 22233 6899999 333333 56
Q ss_pred CCCccEEEEc
Q psy12410 474 LRRVTYIVLD 483 (615)
Q Consensus 474 l~~~~~lVvD 483 (615)
+..+.+||.-
T Consensus 96 ~~~~~~Vi~~ 105 (170)
T 2yjt_D 96 IPDVSHVFNF 105 (170)
Confidence 6677777653
No 224
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.80 E-value=1.5 Score=39.40 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhc
Q psy12410 349 PTPIQAQAIPAIMSG--RDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSL 426 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 426 (615)
..+-|..++..++.. +-.++.+.-|++||...+.-++.... ..|..|.||+|+...+..+. +..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~-------~~Gr~V~vLAp~~~s~~~l~-------~~~ 100 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR-------EQGREVQIIAADRRSQMNMK-------QDE 100 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH-------HTTCCEEEECSTTHHHHHHS-------CTT
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH-------hcCeEEEEEcCchHHHHHHH-------hhc
Confidence 346788999998754 35677789999999875433333322 34888999999987765532 211
Q ss_pred CcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCccEEEEccccccccCCcHHHHHHHHHhc-C
Q psy12410 427 GLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV-R 505 (615)
Q Consensus 427 ~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~ 505 (615)
++. ..++ +. ..+.... ..|..=++||||||-.|. ...+..++..- .
T Consensus 101 ~l~--------------------~~t~-t~-----~~ll~~~---~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~ 147 (189)
T 2l8b_A 101 RLS--------------------GELI-TG-----RRQLLEG---MAFTPGSTVIVDQGEKLS----LKETLTLLDGAAR 147 (189)
T ss_dssp TCS--------------------SCSS-ST-----TTTTTTS---CCCCCCCEEEEEESSSHH----HHHHHHHHHHHHH
T ss_pred CcC--------------------ccee-eh-----hhhhcCC---CCCCCCCEEEEechhhcC----HHHHHHHHHHHHh
Confidence 211 0111 11 1111111 223445589999999876 56666666543 4
Q ss_pred CCCcEEEEecc
Q psy12410 506 PDRQTVMFSAT 516 (615)
Q Consensus 506 ~~~q~l~~SAT 516 (615)
.+.|+|++--+
T Consensus 148 ~naqvvll~~~ 158 (189)
T 2l8b_A 148 HNVQVLITDSG 158 (189)
T ss_dssp TTCCEEEEESS
T ss_pred cCCEEEEeCCc
Confidence 46788877433
No 225
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=86.64 E-value=8 Score=38.83 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=56.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++.-|..++..+... ++.+..++|+.+..+.. ..+..| ..|+|||. .+..+ .+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----id 308 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----ID 308 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CC
Confidence 4678999999999998887777664 77889999998765543 333343 78999993 44443 77
Q ss_pred CCCccEEEEccccc
Q psy12410 474 LRRVTYIVLDEADR 487 (615)
Q Consensus 474 l~~~~~lVvDEah~ 487 (615)
+..+.+||.-.+..
T Consensus 309 ip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 309 IPTVSMVVNYDLPT 322 (395)
T ss_dssp CTTEEEEEESSCCB
T ss_pred cccCCEEEEcCCCC
Confidence 88899998755543
No 226
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.61 E-value=2.8 Score=45.48 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+..+||.|+|+.-|.+++..+... ++.+..++|+.+..+... .+..+ ..|||||. .+..+ ++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~G----ID 332 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGMG----ID 332 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCTT----CC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhcC----CC
Confidence 4678999999999999988877664 789999999987665533 33333 79999993 33333 67
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+.++.+||.
T Consensus 333 ~p~V~~VI~ 341 (591)
T 2v1x_A 333 KPDVRFVIH 341 (591)
T ss_dssp CSCEEEEEE
T ss_pred cccccEEEE
Confidence 788888874
No 227
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.54 E-value=0.64 Score=52.65 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.+..++++||+|+|||+++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999873
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.51 E-value=1.6 Score=49.02 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
...+++++||+|+|||.+.-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35689999999999998743
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.35 E-value=1.3 Score=54.50 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=32.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIG 416 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 416 (615)
.+.++++++++|+|||+.++..+...+ ..|-.++|+.- .++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~--------k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--------HcCCeEEEEEc-cccHHHHH
Confidence 568999999999999998666555554 23666777764 34444544
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.31 E-value=2.3 Score=47.73 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+++.||||+|||.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998753
No 231
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.85 E-value=2.2 Score=43.46 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=54.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.++++.-|..++..+... ++.+..++|+....+... .+..| ..|+||| +.+..+ .++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G----idi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCARG----IDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----CccccC----CCc
Confidence 568999999999999888777665 778899999987665533 33333 7899999 344444 778
Q ss_pred CCccEEEEc
Q psy12410 475 RRVTYIVLD 483 (615)
Q Consensus 475 ~~~~~lVvD 483 (615)
..+++||.-
T Consensus 333 p~~~~Vi~~ 341 (412)
T 3fht_A 333 EQVSVVINF 341 (412)
T ss_dssp TTEEEEEES
T ss_pred cCCCEEEEE
Confidence 889988853
No 232
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.41 E-value=2.1 Score=42.86 Aligned_cols=73 Identities=10% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++.-|..+++.+... ++.+..++|+.+...... .+..+ ..|+|||. .+..+ .+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 303 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----ID 303 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CC
Confidence 3667999999999999887777664 788999999887655432 33333 78999993 44444 66
Q ss_pred CCCccEEEEc
Q psy12410 474 LRRVTYIVLD 483 (615)
Q Consensus 474 l~~~~~lVvD 483 (615)
+..+.+||.-
T Consensus 304 ~~~~~~Vi~~ 313 (367)
T 1hv8_A 304 VNDLNCVINY 313 (367)
T ss_dssp CSCCSEEEES
T ss_pred cccCCEEEEe
Confidence 7788888764
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.33 E-value=0.49 Score=45.60 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.6
Q ss_pred HcCCCEEEEccCCCchhHHh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~ 380 (615)
..|.-++++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667899999999999864
No 234
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=85.21 E-value=0.68 Score=37.46 Aligned_cols=42 Identities=5% Similarity=0.083 Sum_probs=35.5
Q ss_pred HhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCC
Q psy12410 567 LGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGIT 608 (615)
Q Consensus 567 l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 608 (615)
+..+....+++|||.+-..+...+..|...||.+..|.||+.
T Consensus 50 ~~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 50 LNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp GGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred hhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 344455678999999999999999999999999999999874
No 235
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.06 E-value=1.5 Score=53.07 Aligned_cols=120 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ 442 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 442 (615)
|+-+.+.+|.|||||+.+ ++++....+ .|..++|+.+-.+|.... +.++ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~------------ 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKL----GVDI------------ 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHT----TCCG------------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHc----CCCH------------
Confidence 467899999999999984 444444433 367788888876665443 4444 4321
Q ss_pred HHHHhcCCcEEEEChHHH---HHHHHhcCCCcccCCCccEEEEccccccccCC-----------------cHHHHHHHHH
Q psy12410 443 ISELKRGAEIIVCTPGRM---IDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-----------------FEPQVMRIID 502 (615)
Q Consensus 443 ~~~l~~~~~Iiv~Tp~~l---~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-----------------~~~~~~~i~~ 502 (615)
.+++|+-|..- +..+.. +..-..+++||||-+-.+.... +...+.++..
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~----~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~ 1552 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1552 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHH----HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHH----HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHH
Confidence 23566666332 222221 1222458899999988775321 2233555555
Q ss_pred hcCCCCcEEEEeccCChH
Q psy12410 503 NVRPDRQTVMFSATFPRQ 520 (615)
Q Consensus 503 ~~~~~~q~l~~SAT~~~~ 520 (615)
.+....-+++|...+...
T Consensus 1553 ~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1553 NLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHTCEEEEEECBC--
T ss_pred HHHhCCcEEEEeeccccc
Confidence 555544577777776543
No 236
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.87 E-value=2 Score=43.83 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=53.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++.-|..++..+... ++.+..++|+....... ..+..| ..|+|||. .+..+ .+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G----id 323 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG----ID 323 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS----CC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC----CC
Confidence 3568999999999998888777765 77889999988765543 333333 79999993 33333 67
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 324 ip~~~~Vi~ 332 (400)
T 1s2m_A 324 IQAVNVVIN 332 (400)
T ss_dssp CTTEEEEEE
T ss_pred ccCCCEEEE
Confidence 788888875
No 237
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=84.68 E-value=0.82 Score=47.76 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=46.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||.||++.-|..++..+... ++.+.+++|. ........+..| .+|+||| +.+..+ .++. +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e~G----iDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAEMG----ANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTTCC----TTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhhee----eccC-c
Confidence 557999999999999988877765 7888999883 344444455544 8999999 344443 6677 8
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
++||
T Consensus 242 ~~VI 245 (440)
T 1yks_A 242 ERVL 245 (440)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 8877
No 238
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=84.51 E-value=0.76 Score=36.99 Aligned_cols=41 Identities=2% Similarity=0.045 Sum_probs=35.2
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
.+....+++|||.+-..+...+..|...||++..|.||+..
T Consensus 52 ~l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred hCCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 34456789999999999999999999999999999998753
No 239
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=84.45 E-value=0.75 Score=36.82 Aligned_cols=41 Identities=5% Similarity=0.152 Sum_probs=35.3
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
.+....+++|||.+-..+...+..|...||++..|.||+..
T Consensus 52 ~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 52 YFNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp GSCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred hCCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 34456789999999999999999999999999999998753
No 240
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=84.42 E-value=0.77 Score=38.48 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=37.7
Q ss_pred HHHHHhccCCCCcEEEEeCCcch--HHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 563 LLELLGIYQDQGSVIVFVDKQEN--ADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 563 l~~~l~~~~~~~~~LIF~~s~~~--a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
+...+..+....+++|||.+-.. +..++..|...||.+..|.||+..
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 33455555566789999999877 899999999999999999998754
No 241
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.01 E-value=0.81 Score=46.27 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
+..++++||||||||+..
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446899999999999863
No 242
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=83.98 E-value=0.73 Score=38.94 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=34.6
Q ss_pred HhccCCC-CcEEEEe-CCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 567 LGIYQDQ-GSVIVFV-DKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 567 l~~~~~~-~~~LIF~-~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
+..+... .+++||| .+-..+..++..|...||++..|.||+..
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3333345 7899999 57778889999999999999999998764
No 243
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=83.40 E-value=1.1 Score=36.42 Aligned_cols=44 Identities=7% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 566 LLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 566 ~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
.+..+....+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 51 ~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 51 FMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3344455678999999988999999999999994 8899998753
No 244
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.84 E-value=3.4 Score=42.90 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=51.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc--------CCChhHH---HHHHhcC-CcEEEEChHHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG--------GTGISEQ---ISELKRG-AEIIVCTPGRMIDMLA 465 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~ 465 (615)
.+.++||.++++..+..+...+... ++.+..++| +....+. +.....| ..|+||| +.+.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~~~~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----SVGE 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----GGGG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----Cccc
Confidence 3678999999999988887777665 788999998 5554433 2333333 7899999 3344
Q ss_pred hcCCCcccCCCccEEEEccc
Q psy12410 466 ANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 466 ~~~~~~~~l~~~~~lVvDEa 485 (615)
.+ .++..+.+||+-+.
T Consensus 431 ~G----ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 431 EG----LDVPEVDLVVFYEP 446 (494)
T ss_dssp GG----GGSTTCCEEEESSC
T ss_pred cC----CCchhCCEEEEeCC
Confidence 44 77888888886544
No 245
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.78 E-value=1.1 Score=46.78 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=28.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELC 412 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La 412 (615)
..+++++|+||||||..+ .+++..++.. +..++|+=|.-++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchh
Confidence 467999999999999974 3344444432 44566666666654
No 246
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=82.66 E-value=27 Score=34.41 Aligned_cols=183 Identities=12% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCeEEEEcCcH---HHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHh---cCCcEEEECh--HHHHHHHHhc
Q psy12410 399 GPMAIIMSPTR---ELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELK---RGAEIIVCTP--GRMIDMLAAN 467 (615)
Q Consensus 399 ~~~~lil~Ptr---~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~---~~~~Iiv~Tp--~~l~~~l~~~ 467 (615)
.+++.||+|.. .-..++..-+...+...|+.+.++........+.. .+. .+++-||.+| ......+..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~- 81 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL- 81 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH-
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH-
Confidence 35677777753 34556667777777777888887776655544332 222 2666555444 223333332
Q ss_pred CCCcccCCCccEEEEcccccc-------------------ccCCc----HHHHHHHHHhcC----CC-CcEEEEeccCCh
Q psy12410 468 SGRVTNLRRVTYIVLDEADRM-------------------FDMGF----EPQVMRIIDNVR----PD-RQTVMFSATFPR 519 (615)
Q Consensus 468 ~~~~~~l~~~~~lVvDEah~~-------------------~~~~~----~~~~~~i~~~~~----~~-~q~l~~SAT~~~ 519 (615)
..-..+-+|++|-.-.- ...++ ......++.... .. .++++++.....
T Consensus 82 ----~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~ 157 (350)
T 3h75_A 82 ----SQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVT 157 (350)
T ss_dssp ----HTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTS
T ss_pred ----HHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCC
Confidence 11124455666532110 00111 233444555541 13 567888766432
Q ss_pred H-HHHHHHHH---c-CCCEEEEECCcccccCCeEEEEEe-cChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHh
Q psy12410 520 Q-MEALARRI---L-NKPIEIQVGGRSVVCKEVEQHVIV-LDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHS 593 (615)
Q Consensus 520 ~-~~~~~~~~---~-~~p~~i~~~~~~~~~~~i~~~~~~-~~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L 593 (615)
. ...-...| + ..+. + .+...+.. .....-...+..+|... .....|||.+-..|.-+...|
T Consensus 158 ~~~~~R~~Gf~~~l~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~aI~~~~d~~a~g~~~al 224 (350)
T 3h75_A 158 PAAQLRERGLRRALAEHPQ-V----------HLRQLVYGEWNRERAYRQAQQLLKRY--PKTQLVWSANDEMALGAMQAA 224 (350)
T ss_dssp HHHHHHHHHHHHHHHHCTT-E----------EEEEEEECTTCHHHHHHHHHHHHHHC--TTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-e----------EEEEEeeCCCcHHHHHHHHHHHHHhC--CCcCEEEECChHHHHHHHHHH
Confidence 1 11111111 1 1111 0 01111111 12233344555666554 457899999999999999999
Q ss_pred hcCCCc
Q psy12410 594 MDPCLE 599 (615)
Q Consensus 594 ~~~g~~ 599 (615)
...|+.
T Consensus 225 ~~~G~~ 230 (350)
T 3h75_A 225 RELGRK 230 (350)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 998875
No 247
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.61 E-value=4.3 Score=47.84 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=59.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.+++|+||+..-|..+++.+..... ++.+.+++|+....+.. ..+..| .+|+|||. .+..+ .+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iD 879 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----ID 879 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ec
Confidence 467899999999988888888887654 56789999998765443 333333 89999993 45544 77
Q ss_pred CCCccEEEEccccc
Q psy12410 474 LRRVTYIVLDEADR 487 (615)
Q Consensus 474 l~~~~~lVvDEah~ 487 (615)
+.++.+||+..++.
T Consensus 880 ip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 880 IPTANTIIIERADH 893 (1151)
T ss_dssp CTTEEEEEETTTTS
T ss_pred ccCCcEEEEeCCCC
Confidence 88999999887764
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.03 E-value=2 Score=45.56 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=24.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMS 406 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 406 (615)
.|.-+++.|++|+|||...+-.+++.+ . ..+..|+|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~------~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T------AMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T------TSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H------hcCCcEEEEe
Confidence 345678889999999987554444432 2 1144567665
No 249
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.84 E-value=6.2 Score=39.73 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=54.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++..|..++..+... ++.+..++|+........ .+..+ ..|+|||. .+..+ .+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 315 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MD 315 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC----BC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC----CC
Confidence 4678999999999999887777654 788899999987655432 33333 78999993 33333 67
Q ss_pred CCCccEEEEccc
Q psy12410 474 LRRVTYIVLDEA 485 (615)
Q Consensus 474 l~~~~~lVvDEa 485 (615)
+..+++||.-..
T Consensus 316 i~~~~~Vi~~~~ 327 (391)
T 1xti_A 316 IERVNIAFNYDM 327 (391)
T ss_dssp CTTEEEEEESSC
T ss_pred cccCCEEEEeCC
Confidence 888998887544
No 250
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.77 E-value=2.8 Score=43.47 Aligned_cols=69 Identities=10% Similarity=0.200 Sum_probs=51.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccCCC
Q psy12410 401 MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRR 476 (615)
Q Consensus 401 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 476 (615)
.+||.|+|+.-|..++..+... ++.+..++|+....+... .+..| ..|+|||. .+..+ .++..
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999998887776654 788999999987655433 33344 79999994 44443 67888
Q ss_pred ccEEEE
Q psy12410 477 VTYIVL 482 (615)
Q Consensus 477 ~~~lVv 482 (615)
+.+||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888876
No 251
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=81.69 E-value=0.7 Score=36.51 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=34.3
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
.+.. .+++|||.+-..+...+..|...||.+..|.||+..
T Consensus 50 ~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 50 GLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp CCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred hCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 3445 789999999999999999999999998899999764
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.67 E-value=1.9 Score=44.22 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=28.6
Q ss_pred HHHHHH-----cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 356 AIPAIM-----SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 356 ~i~~i~-----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
.|..++ .|.-++++||.|+|||......++..+. +......+..+||+.-
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~--p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI--PLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTS--CGGGTCCSSEEEEEES
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhcc--CcccCCCCCcEEEEeC
Confidence 345555 3467889999999999875433333221 1111113456777653
No 253
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=81.23 E-value=2.1 Score=32.85 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
....+++|||.+-..+..++..|...||. +..+ |++..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 34668999999988999999999999995 5566 88764
No 254
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.04 E-value=2.5 Score=43.70 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q psy12410 363 GRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~ 379 (615)
+.-++++||||||||+.
T Consensus 167 ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 44578999999999987
No 255
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.98 E-value=5.2 Score=44.93 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhh-------hcCcEEEEEEcCCChhHHHHHHh--------c-CCcEEEEChHHHHH
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTK-------SLGLRVVCVYGGTGISEQISELK--------R-GAEIIVCTPGRMID 462 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~l~--------~-~~~Iiv~Tp~~l~~ 462 (615)
+..+||.+|++.-|..++..+...+. ..++.+..++|+....++...+. . ...||||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 56899999999999999888876332 24788999999988766643332 2 26899999 4
Q ss_pred HHHhcCCCcccCCCccEEEE
Q psy12410 463 MLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 463 ~l~~~~~~~~~l~~~~~lVv 482 (615)
.+..+ +++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 55544 67788887764
No 256
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.93 E-value=2.9 Score=42.68 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=52.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
..++||.|+++.-|..++..+... ++.+..++|+....+... .+..| ..|+|||. .+..+ .++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 342 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDV 342 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCc
Confidence 458999999999998887777654 778899999987655432 33333 78999994 44433 678
Q ss_pred CCccEEEE
Q psy12410 475 RRVTYIVL 482 (615)
Q Consensus 475 ~~~~~lVv 482 (615)
..+.+||.
T Consensus 343 ~~v~~Vi~ 350 (410)
T 2j0s_A 343 PQVSLIIN 350 (410)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 88888885
No 257
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.92 E-value=2.2 Score=44.28 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||+||++.-|..+++.+... ++.+..++|+ ........+..| .+|+||| +.+..+ .++. +
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT-----~v~e~G----iDip-~ 235 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITT-----DISEMG----ANFK-A 235 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEEC-----GGGGTS----CCCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEEC-----chHHcC----cccC-C
Confidence 447999999999999988877765 7788999886 333333444444 8999999 455544 5565 5
Q ss_pred cEE
Q psy12410 478 TYI 480 (615)
Q Consensus 478 ~~l 480 (615)
.+|
T Consensus 236 ~~V 238 (431)
T 2v6i_A 236 DRV 238 (431)
T ss_dssp SEE
T ss_pred cEE
Confidence 554
No 258
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.78 E-value=2.8 Score=44.73 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+..+||.++|+.-|..++..+... ++.+..++|+.+..... ..+..+ ..|+|||. .+..+ ++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~G----iD 301 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG----IN 301 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT----TC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhCC----CC
Confidence 3567999999999999988777664 78899999998765543 233333 79999994 33333 67
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+.++.+||.
T Consensus 302 ~p~v~~VI~ 310 (523)
T 1oyw_A 302 KPNVRFVVH 310 (523)
T ss_dssp CTTCCEEEE
T ss_pred ccCccEEEE
Confidence 788888875
No 259
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.49 E-value=1.8 Score=44.35 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRH 387 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~ 387 (615)
.+.+++++|+||+|||...-..+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999998754444333
No 260
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=79.89 E-value=1.4 Score=37.20 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=34.6
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
.+....+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 78 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred hCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3445678999999999999999999999995 8899999753
No 261
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.49 E-value=8 Score=41.18 Aligned_cols=125 Identities=13% Similarity=0.196 Sum_probs=63.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 441 (615)
.|.-+++.|++|+|||......+-. +.. .|.+++++++... ..|+...+.. +++. ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~-~~~-------~G~~vi~~~~ee~-~~~l~~~~~~----~g~~---------~~- 336 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN-ACA-------NKERAILFAYEES-RAQLLRNAYS----WGMD---------FE- 336 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH-HHT-------TTCCEEEEESSSC-HHHHHHHHHT----TSCC---------HH-
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH-HHh-------CCCCEEEEEEeCC-HHHHHHHHHH----cCCC---------HH-
Confidence 4567889999999999874433322 211 2445667665322 2344433322 2221 11
Q ss_pred HHHHHhcCCcEEE-------EChHHHHHHHHhcCCCcccCCCccEEEEccccccccCC-----cHHHHHHHHHhcCC-CC
Q psy12410 442 QISELKRGAEIIV-------CTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMG-----FEPQVMRIIDNVRP-DR 508 (615)
Q Consensus 442 ~~~~l~~~~~Iiv-------~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah~~~~~~-----~~~~~~~i~~~~~~-~~ 508 (615)
... ..+ .+.+ .+.+.....+... .......+|||| -=..++.. ....+..++..+.. +.
T Consensus 337 ~~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~----~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 337 EME--RQN-LLKIVCAYPESAGLEDHLQIIKSE----INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp HHH--HTT-SEEECCCCGGGSCHHHHHHHHHHH----HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH--hCC-CEEEEEeccccCCHHHHHHHHHHH----HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 111 111 1111 2455555444432 224567899999 55555665 56666666665543 34
Q ss_pred cEEEEeccC
Q psy12410 509 QTVMFSATF 517 (615)
Q Consensus 509 q~l~~SAT~ 517 (615)
-+|++|-..
T Consensus 409 tvilvsh~~ 417 (525)
T 1tf7_A 409 TGLFTNTSD 417 (525)
T ss_dssp EEEEEEECS
T ss_pred EEEEEECcc
Confidence 344444443
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.26 E-value=1.7 Score=46.18 Aligned_cols=31 Identities=23% Similarity=0.068 Sum_probs=22.4
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEccCCCchhHH
Q psy12410 349 PTPIQAQAIPA-IMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 349 ~~~~Q~~~i~~-i~~~~~~i~~a~TGsGKT~~ 379 (615)
+++.+...+.. +..|.+++++||||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444444433 45788999999999999987
No 263
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.94 E-value=2.3 Score=39.28 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHhH
Q psy12410 349 PTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 349 ~~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
-+.-|..++..+..|.-+.+.||.|+|||+.+-
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 344567788888888889999999999998643
No 264
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=78.92 E-value=2.4 Score=46.80 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||.||++.-|..++..+... ++.+..++|. .....+..+..| .+||||| +.+..+ +++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhcc----eeeC-C
Confidence 568999999999999887776654 7889999984 333333344444 7999999 445544 5677 7
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 265
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=78.67 E-value=2.5 Score=50.07 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.8
Q ss_pred CcEEEEeCCc-chHHHHHHHhhcCCCcEEEEcCCCChh
Q psy12410 574 GSVIVFVDKQ-ENADSLLFHSMDPCLEFLPLPAGITRF 610 (615)
Q Consensus 574 ~~~LIF~~s~-~~a~~l~~~L~~~g~~~~~lhg~~~~~ 610 (615)
+.+.|.|.+. ..+..|...|...|+++.. .|+.+-.
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~-~~~~~~~ 379 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFI-DGKASML 379 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEE-SSCCBST
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEE-CCCcchh
Confidence 4588999997 4899999999999999876 4444433
No 266
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.32 E-value=1.8 Score=34.95 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=33.9
Q ss_pred cCCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 570 YQDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 570 ~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
+....+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 345668999999988999999999999995 8889998754
No 267
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=77.73 E-value=50 Score=31.47 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCC
Q psy12410 558 QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCL 598 (615)
Q Consensus 558 ~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~ 598 (615)
.-...+..+|... .....|||.+...|..+...|...|+
T Consensus 173 ~~~~~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 173 HSRRVAHQLLEDY--PNLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHHHHHHHHHHHC--TTEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC--CCceEEEECCCcchhhHHHHHHhcCC
Confidence 3344555566543 45789999999999999999999887
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.11 E-value=2.7 Score=41.44 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=26.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTREL 411 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 411 (615)
-+++.+|.|+|||...+-.+.+.. .. ..+.+++|+..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hc-----CCCceEEEEeccchh
Confidence 478889999999987554444333 21 125678888765444
No 269
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=76.47 E-value=64 Score=32.11 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=98.8
Q ss_pred CCeEEEEcCc-H---HHHHHHHHHHHHhhhhcC--cEEEEEEcCCChhH---HHHH-HhcCCcEEEEChHHHHHHHHhcC
Q psy12410 399 GPMAIIMSPT-R---ELCMQIGKEAKKFTKSLG--LRVVCVYGGTGISE---QISE-LKRGAEIIVCTPGRMIDMLAANS 468 (615)
Q Consensus 399 ~~~~lil~Pt-r---~La~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~---~~~~-l~~~~~Iiv~Tp~~l~~~l~~~~ 468 (615)
..++.+|+|. . .--..+.+-++++...++ +.+.++........ .+.. +..++++||++...+.+.+..-.
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA 105 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVA 105 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH
Confidence 3456666663 1 344555666777777777 66665544332211 1222 23579999998766655543311
Q ss_pred CCcccCCCccEEEEcccccccc------CCcHHHH-HH-HHHhcCCCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCc
Q psy12410 469 GRVTNLRRVTYIVLDEADRMFD------MGFEPQV-MR-IIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVGGR 540 (615)
Q Consensus 469 ~~~~~l~~~~~lVvDEah~~~~------~~~~~~~-~~-i~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 540 (615)
....++.++++|-.-...+ ..+...+ .- +...+.....+-++.+...+.+..+...|... .
T Consensus 106 ---~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF~~G--------~ 174 (356)
T 3s99_A 106 ---KKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSFMLG--------A 174 (356)
T ss_dssp ---TTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHHHHH--------H
T ss_pred ---HHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHHH--------H
Confidence 2234677888875321111 0011111 11 11234445556666776666666665555421 0
Q ss_pred ccccCCeEEEEEecC---hhHHH-HHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 541 SVVCKEVEQHVIVLD---EEQKM-LKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 541 ~~~~~~i~~~~~~~~---~~~k~-~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
....+.+...+..+. ...+- .....++.. +..+|||..-.. -+.+.+++.|+.+.-+.+++..
T Consensus 175 k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~----G~DvIf~~~d~~--Gv~~aa~e~Gv~vIG~D~dq~~ 241 (356)
T 3s99_A 175 QSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQ----GVDIITQHTDST--AAIQVAHDRGIKAFGQASDMIK 241 (356)
T ss_dssp HTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHT----TCSEEEESSSSS--HHHHHHHHTTCEEEEEESCCGG
T ss_pred HHHCCCCEEEEEECCCCCChHHHHHHHHHHHhC----CCcEEEECCCch--HHHHHHHHcCCEEEEEcCchhh
Confidence 011122332233332 22333 233444432 456888876544 4567777789988888887653
No 270
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.46 E-value=4.9 Score=38.50 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHH-HHHHHcCC-----CEEEEccCCCchhHHhH
Q psy12410 336 KILDALKKQNYEKPTPIQAQA-IPAIMSGR-----DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 336 ~l~~~l~~~~~~~~~~~Q~~~-i~~i~~~~-----~~i~~a~TGsGKT~~~~ 381 (615)
.+.+.|.-.|+. |++-.. +..++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 677777777764 555333 44455443 48999999999998754
No 271
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.75 E-value=5.4 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
...++++.||+|+|||.++
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999874
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=75.58 E-value=1.5 Score=39.30 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999874
No 273
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.30 E-value=5.2 Score=47.31 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=42.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHhcCCC----CCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRHILDQPP----LEETDGPMAIIMSPTRELCMQIGKEAKKF 422 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~----~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 422 (615)
..+|.|.-|||||.+...-++..++.... ........+|+|+=|+..|..+.+.|...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 35999999999999977777777764210 00122457999999999999888777654
No 274
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=75.26 E-value=2.5 Score=36.03 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=35.0
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCC-cEEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCL-EFLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~-~~~~lhg~~~~ 609 (615)
......+++|||.+-..+..++..|...|| ++..|.||+..
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 344567899999999999999999999999 58899999754
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.04 E-value=3.2 Score=43.94 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHh
Q psy12410 353 QAQAIPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 353 Q~~~i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
-..++.++..+.++++.||+|+|||..+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3445566678899999999999999873
No 276
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=75.02 E-value=3.8 Score=33.22 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=33.6
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
....+++|||.+-..+..++..|...||....|.||+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 346789999999999999999999999966888899864
No 277
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=74.93 E-value=1.8 Score=37.23 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=33.5
Q ss_pred CCCCcEEEEeCCc--chHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQ--ENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~--~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
....+++|||.+- ..+..++..|...||++..|.||+..
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 3466899999987 68999999999999999999998754
No 278
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.76 E-value=2.4 Score=40.49 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.+..+++.|++|+|||.++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999874
No 279
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=74.54 E-value=2 Score=43.53 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=18.3
Q ss_pred HHHcCCCEEEEccCCCchhHH
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~ 379 (615)
.+..|..++++||||||||+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345789999999999999987
No 280
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.50 E-value=4.2 Score=40.92 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
...++++.||+|+|||+++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999999743
No 281
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=74.29 E-value=3.4 Score=45.21 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=49.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcCCcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
.+.++||.++|+.-|..+++.+... ++.+..++|+...... ...+..||||| +.+..+ +++. +
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG----IDId-V 457 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG----YTGD-F 457 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH----CCCC-B
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc----CCCC-C
Confidence 4678999999999999887777653 7899999999876542 12457999999 345544 4554 7
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
++||
T Consensus 458 ~~VI 461 (666)
T 3o8b_A 458 DSVI 461 (666)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7776
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.25 E-value=1.9 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHcCCCEEEEccCCCchhHHh
Q psy12410 357 IPAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 357 i~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
+..+..+.++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556889999999999999874
No 283
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.25 E-value=1.6 Score=43.46 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
+-++++||||+|||.+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999998543
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.24 E-value=1.8 Score=39.40 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.++.++++|++|||||++.-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46779999999999999854
No 285
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.78 E-value=27 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 557 EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 557 ~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
..-...+..+|... ..+..|||.+...|..+...|...|+.
T Consensus 177 ~~~~~~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 177 ESGQQAVEELMGLQ--QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHHTSS--SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCC--CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 33444555666543 457889999999999999999988874
No 286
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=73.29 E-value=3.4 Score=35.59 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCcchHHHHHHHhhcCCC-cEEEEcCCCC
Q psy12410 572 DQGSVIVFVDKQENADSLLFHSMDPCL-EFLPLPAGIT 608 (615)
Q Consensus 572 ~~~~~LIF~~s~~~a~~l~~~L~~~g~-~~~~lhg~~~ 608 (615)
...++||||.+-..+..++..|...|| ++..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998889999999999999 5999999984
No 287
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.14 E-value=3.9 Score=37.58 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=42.1
Q ss_pred hhcCCHHHHHHHHhhhcCeEecCCCCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC----CCEEEEcc
Q psy12410 296 IARMTPEEVEKYKEELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG----RDLIGIAK 371 (615)
Q Consensus 296 ~~~~~~~~~~~~r~~~~~i~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~i~~a~ 371 (615)
...|+-.+|...+... +. +. |=-..|.+.|+-.++ .+..+ ...+..++.+ +.+++.||
T Consensus 5 ~~~m~~~~~i~~~~~~--~~--~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 5 GSGSNMSQWIRFRCSK--ID--EG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp -CCSCHHHHHHHHHHT--SC--SC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHhcCHHHHHHHHHHH--cc--CC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 4567777777776542 21 11 222356666665554 34444 4445555544 25889999
Q ss_pred CCCchhHHhHHHHHHHH
Q psy12410 372 TGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 372 TGsGKT~~~~l~~l~~~ 388 (615)
.|+|||..+ ..++.++
T Consensus 67 PGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 67 ANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp GGGCHHHHH-HHHHHHH
T ss_pred CCCCHHHHH-HHHHHHh
Confidence 999999874 3344443
No 288
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.12 E-value=2 Score=39.13 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|+-+.++||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999998743
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.86 E-value=2 Score=38.38 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
.+.++++|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999998543
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.57 E-value=1.7 Score=42.76 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
-+++.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46788999999998754
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=72.47 E-value=1.4 Score=39.30 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.6
Q ss_pred HcCCCEEEEccCCCchhHHhH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~ 381 (615)
+.++.++++|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999999754
No 292
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.26 E-value=4.7 Score=48.22 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=28.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
+++-.+||+|||=.-+|......+...+.....++-+|+++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34556888999887777766777777777666666444444
No 293
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=72.05 E-value=5.2 Score=42.52 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc--------CCChhHH---HHHHhc-C-CcEEEEChHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG--------GTGISEQ---ISELKR-G-AEIIVCTPGRMIDML 464 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~---~~~l~~-~-~~Iiv~Tp~~l~~~l 464 (615)
.+.++||.++++..|..+...+.......++.+..++| +.+..+. +..... | ..|+|||. .+
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 462 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA 462 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CT
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh
Confidence 35789999999999999988888764333355555554 4333332 233344 3 68999993 33
Q ss_pred HhcCCCcccCCCccEEEE
Q psy12410 465 AANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lVv 482 (615)
..+ .++..+++||.
T Consensus 463 ~~G----lDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEG----IDIAECNLVIL 476 (555)
T ss_dssp TCC----EETTSCSEEEE
T ss_pred hcC----CccccCCEEEE
Confidence 333 77888888875
No 294
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=71.91 E-value=41 Score=33.48 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
.++++|++|+|||..+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578889999999987543
No 295
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=71.77 E-value=7 Score=43.04 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=52.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChh---HHHHHHhc--C-CcEEEEChHHHHHHHHhcCCCcccCC
Q psy12410 402 AIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS---EQISELKR--G-AEIIVCTPGRMIDMLAANSGRVTNLR 475 (615)
Q Consensus 402 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~--~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 475 (615)
.+|+++++.-|..+...+... ++.+..++|+.+.. .....+.. | .+|||||. .+..+ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi- 388 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL- 388 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC-
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc-
Confidence 356688888788777766653 78899999999876 34445554 3 79999993 45544 678
Q ss_pred CccEEEEcccccc
Q psy12410 476 RVTYIVLDEADRM 488 (615)
Q Consensus 476 ~~~~lVvDEah~~ 488 (615)
.+.+||+-.+...
T Consensus 389 ~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 SIRRIIFYSLIKP 401 (677)
T ss_dssp CBSEEEESCSBC-
T ss_pred CccEEEECCcccc
Confidence 8999998877653
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.74 E-value=2.3 Score=39.15 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|.-++++||+|+|||.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566888999999999874
No 297
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.52 E-value=2.1 Score=42.10 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhHH
Q psy12410 366 LIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l 382 (615)
++++||||+|||..+..
T Consensus 13 i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 13 IFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCccCHHHHHHH
Confidence 67889999999987543
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.49 E-value=2 Score=39.30 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.++-+++.||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556899999999999763
No 299
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.41 E-value=6.1 Score=43.05 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||.++|+.-|..++..+... ++.+..++|. .....+..+..| ..|||||. .+..+ .++. +
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v 419 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-A 419 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHcC----cccC-c
Confidence 457999999999999988877765 7788888875 333334444444 79999994 45544 5664 7
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
.+||
T Consensus 420 ~~VI 423 (618)
T 2whx_A 420 GRVI 423 (618)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7763
No 300
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.35 E-value=2.3 Score=43.49 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=45.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++.-|..++..+.. .++.+..++|+........ .+..| ..|+|||. .+..+ .+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----id 345 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHA----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLARG----ID 345 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHT----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHh----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccccC----CC
Confidence 345799999999998887766654 3778899999886555432 23333 78999994 33322 56
Q ss_pred CCCccEEEE
Q psy12410 474 LRRVTYIVL 482 (615)
Q Consensus 474 l~~~~~lVv 482 (615)
+..+.+||.
T Consensus 346 ip~v~~Vi~ 354 (414)
T 3eiq_A 346 VQQVSLVIN 354 (414)
T ss_dssp GGGCSCEEE
T ss_pred ccCCCEEEE
Confidence 777888775
No 301
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=71.32 E-value=4.4 Score=44.24 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=45.7
Q ss_pred CCCcEEEEeccCChHHHHHHHHHcCCCEEEEECCcccccCCeEEEEEe-cC------hhHHHHHHHHHHhcc--CCCCcE
Q psy12410 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQVGGRSVVCKEVEQHVIV-LD------EEQKMLKLLELLGIY--QDQGSV 576 (615)
Q Consensus 506 ~~~q~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-~~------~~~k~~~l~~~l~~~--~~~~~~ 576 (615)
....+|++|||+.+ +..+...+..++..+.++ ..+...+....+.. ++ ...-...+...|... ..+|.+
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~ 451 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNT 451 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCE
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 34558999999987 455555443333333332 22222332222110 11 111112222222211 125679
Q ss_pred EEEeCCcchHHHHHHHhh
Q psy12410 577 IVFVDKQENADSLLFHSM 594 (615)
Q Consensus 577 LIF~~s~~~a~~l~~~L~ 594 (615)
|||++|....+.++..|.
T Consensus 452 lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 452 IVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp EEEESCHHHHHHHTSSCC
T ss_pred EEEeCCHHHHHHHHHHHH
Confidence 999999999999998886
No 302
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.15 E-value=2.9 Score=42.11 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556677776 46668999999987
No 303
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.09 E-value=3.4 Score=38.61 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=17.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLPLLRH 387 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~~l~~ 387 (615)
++++.++.|+|||.+++-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58889999999999865444433
No 304
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.00 E-value=4.5 Score=42.18 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||.+|++.-|..++..+... ++.+..++|... ...+..+..| ..||||| +.+..+ .++..
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~~~G----iDip~- 252 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISEMG----ANFRA- 252 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGGGSS----CCCCC-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHHHhC----cCCCC-
Confidence 447999999999999887776654 778888887653 2223333444 7999999 455544 56666
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
.+||
T Consensus 253 ~~VI 256 (451)
T 2jlq_A 253 GRVI 256 (451)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6665
No 305
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.76 E-value=2.3 Score=37.69 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.-++++|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999843
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=70.42 E-value=2.8 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++++|+.|||||++.-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5678999999999998743
No 307
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.36 E-value=2.4 Score=38.77 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|+-++++||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 56778999999999998743
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.33 E-value=2.3 Score=38.67 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.6
Q ss_pred HcCCCEEEEccCCCchhHHh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~ 380 (615)
..|.-++++|++|||||++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999874
No 309
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.97 E-value=7.6 Score=38.02 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHH---HHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQIS---ELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.++++.-|..++..+. .+..++|+........ .+..| ..|+||| +.+..+ .+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~G----id 281 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVASRG----LD 281 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHHTT----CC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----CccccC----CC
Confidence 46779999999988877654433 4677888877655433 33333 7999999 455554 77
Q ss_pred CCCccEEEEcc
Q psy12410 474 LRRVTYIVLDE 484 (615)
Q Consensus 474 l~~~~~lVvDE 484 (615)
+..+.+||.-.
T Consensus 282 ~~~~~~Vi~~~ 292 (337)
T 2z0m_A 282 IPLVEKVINFD 292 (337)
T ss_dssp CCCBSEEEESS
T ss_pred ccCCCEEEEec
Confidence 88888888643
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=69.76 E-value=2.4 Score=38.50 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|.-+.++||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999874
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=69.40 E-value=2.5 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=14.2
Q ss_pred EEEEccCCCchhHHhHH
Q psy12410 366 LIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l 382 (615)
++++||||||||..+..
T Consensus 4 i~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 68899999999987543
No 312
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=69.39 E-value=3.5 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455667776 466799999999883
No 313
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=68.88 E-value=3.3 Score=42.39 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455667765 466689999999883
No 314
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.84 E-value=8.3 Score=49.21 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH----HHHHHHHcCCCEEEEccCCCchhHHhHH
Q psy12410 333 VSKKILDALKKQNYEKPTPIQA----QAIPAIMSGRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 333 l~~~l~~~l~~~~~~~~~~~Q~----~~i~~i~~~~~~i~~a~TGsGKT~~~~l 382 (615)
+...+.+.+...++ .+++.+. +....+.....++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34456666666666 4666652 3344455678899999999999998643
No 315
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.79 E-value=3.7 Score=42.07 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=19.5
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~~ 380 (615)
++..++.|.|+ +..|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56667788764 66689999999884
No 316
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=68.72 E-value=33 Score=34.78 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHH---cCCCEEEEccCCCchhHHhHH
Q psy12410 349 PTPIQAQAIPAIM---SGRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 349 ~~~~Q~~~i~~i~---~~~~~i~~a~TGsGKT~~~~l 382 (615)
|-..-..+|..++ .|+.+.+.+++|+|||.....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 3344455666655 689999999999999998543
No 317
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=68.70 E-value=3.2 Score=41.47 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=18.3
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445567766 466699999999883
No 318
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.40 E-value=2.3 Score=42.37 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=17.6
Q ss_pred HHcCCCEEEEccCCCchhHH
Q psy12410 360 IMSGRDLIGIAKTGSGKTVA 379 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~ 379 (615)
+..|..++++||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999986
No 319
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.14 E-value=2.9 Score=41.10 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
...++++.|++|+|||+++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999874
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=68.08 E-value=2.9 Score=37.33 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++++|+.|||||++.-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999999743
No 321
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=68.03 E-value=3.8 Score=41.34 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445667776 466699999999883
No 322
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.94 E-value=4.1 Score=40.92 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|+.|+|||...+..+.... . .+..++|+.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~-~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ-A-------AGGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-H-------TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-h-------CCCeEEEEEC
Confidence 46689999999999987554444333 2 2445666653
No 323
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=67.89 E-value=2.3 Score=37.28 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
-++++|++|||||++.-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999754
No 324
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.76 E-value=3.8 Score=41.45 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=18.0
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|+||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 4455667776 46668999999987
No 325
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=67.73 E-value=3.9 Score=40.99 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=18.1
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445567766 466699999999873
No 326
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.63 E-value=4 Score=40.60 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5566677876 466799999999873
No 327
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=67.59 E-value=4.3 Score=40.85 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcC
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSP 407 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 407 (615)
|.-+++.|+.|+|||..++..+.... . .+..++|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~-~-------~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH-H-------TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------CCCeEEEEeC
Confidence 46689999999999998654444333 2 2345777664
No 328
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.36 E-value=3.9 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=18.3
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455667766 466699999999873
No 329
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.20 E-value=6.4 Score=41.65 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHI 388 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~ 388 (615)
+.++++.|.||||||.+.-..++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999997544343333
No 330
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=67.09 E-value=3.9 Score=41.05 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~~ 380 (615)
++..++.|.|+ +..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45566788764 66689999999883
No 331
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=67.05 E-value=4.1 Score=40.78 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.5
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~~ 380 (615)
++..++.|.|+ +..|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 44556677764 66689999999873
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=66.93 E-value=3.3 Score=37.09 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+..++++|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999999743
No 333
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.88 E-value=4.1 Score=41.13 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=18.0
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|+||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4455667776 46668999999987
No 334
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.84 E-value=4 Score=41.02 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHH
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~ 379 (615)
++..++.|.|+ +..|+||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45556777764 6668999999987
No 335
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.74 E-value=3.9 Score=41.09 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 357 IPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 357 i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
+..++.|.| ++..|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445567776 466699999999873
No 336
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=66.72 E-value=3 Score=41.32 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.++++||||+|||.+..
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998754
No 337
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=66.67 E-value=3.4 Score=35.14 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=32.8
Q ss_pred CCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 572 DQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 572 ~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
...+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4568999999988999999999999995 8889998753
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.59 E-value=3.7 Score=38.05 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCCchhHHh
Q psy12410 361 MSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~ 380 (615)
..|.-+.++||+|+|||..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999874
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=66.59 E-value=3.7 Score=37.44 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.4
Q ss_pred HcCCCEEEEccCCCchhHHhH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~ 381 (615)
..++-++++||+|||||.+.-
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 457789999999999998743
No 340
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.58 E-value=2.7 Score=37.66 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|.-++++|++|||||+.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999873
No 341
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=66.54 E-value=4.3 Score=34.70 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=33.6
Q ss_pred ccCCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 569 IYQDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 569 ~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
.+....+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 52 ~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 52 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred cCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 3445668999999988999999999999995 8888888753
No 342
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.49 E-value=3.6 Score=36.90 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+-+.++||+|+|||++.
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44788999999999874
No 343
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.46 E-value=3.8 Score=41.29 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=18.2
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|+||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4455667876 46668999999987
No 344
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=66.37 E-value=2.9 Score=35.50 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhcCCCc-EEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMDPCLE-FLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~ 609 (615)
....+++|||.+-..+..++..|...||. +..|.||+..
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 34668999999988899999999999995 9999998753
No 345
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.36 E-value=9.3 Score=49.34 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=34.7
Q ss_pred CHHHHHHHHHCCCCCCCHHHH----HHHHHHHcCCCEEEEccCCCchhHHhHHHHHHHHh
Q psy12410 334 SKKILDALKKQNYEKPTPIQA----QAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 334 ~~~l~~~l~~~~~~~~~~~Q~----~~i~~i~~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
...|.+.+...|+ .|++.+. |....+.....++++||||+|||.++- +|...+
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al 930 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAI 930 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHH
Confidence 4556666677777 5666553 233444466778999999999999854 444443
No 346
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.23 E-value=4 Score=41.00 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.2
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|+||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4455667776 46668999999988
No 347
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.00 E-value=4.1 Score=38.71 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.2
Q ss_pred HcCCCEEEEccCCCchhHHhH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~ 381 (615)
+.|..++++|++|+|||++.-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358999999999999999854
No 348
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.89 E-value=7.4 Score=35.10 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=19.1
Q ss_pred CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 450 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 450 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
.+++-+.+..|...+..- ...+++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l------~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD------LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH------TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh------cCCCCEEEEECCC
Confidence 456656666666666532 2457889988543
No 349
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=65.82 E-value=89 Score=29.33 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
...+..+|.......+..|||.+...|..+...|.+.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 4455566665422126899999999999999999998875
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.76 E-value=2.6 Score=37.66 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|..++++|+.|||||++.-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999999754
No 351
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=65.73 E-value=45 Score=31.55 Aligned_cols=36 Identities=6% Similarity=-0.023 Sum_probs=27.1
Q ss_pred HHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 562 KLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 562 ~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
.+..+|... ..+..|||.+...|..+...|...|+.
T Consensus 176 ~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 176 GAIKVLTGA--DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHTC---CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCC--CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 445555432 457889999999999999999988875
No 352
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=65.54 E-value=80 Score=32.87 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=47.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccCC
Q psy12410 400 PMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNLR 475 (615)
Q Consensus 400 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 475 (615)
...+|++....-|..+.+.+.. .+..+..++|++...... ..+..| .+|+|||+..+ ..+ .++.
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~~G----iDip 415 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----STG----ISVK 415 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----HHS----CCCC
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----hcc----cccc
Confidence 3444444445555555444443 355888999988755432 233334 79999996554 334 6788
Q ss_pred CccEEEEcccc
Q psy12410 476 RVTYIVLDEAD 486 (615)
Q Consensus 476 ~~~~lVvDEah 486 (615)
.+.+||+..+.
T Consensus 416 ~v~~vi~~~~~ 426 (510)
T 2oca_A 416 NLHHVVLAHGV 426 (510)
T ss_dssp SEEEEEESSCC
T ss_pred cCcEEEEeCCC
Confidence 89999998777
No 353
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.50 E-value=4 Score=41.87 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~~ 380 (615)
++..++.|.|+ +..|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 56667778764 66689999999883
No 354
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.24 E-value=4.1 Score=41.23 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=17.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445667776 46668999999987
No 355
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=65.17 E-value=4.3 Score=41.25 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4455667766 466689999999884
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=65.04 E-value=3.1 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q psy12410 364 RDLIGIAKTGSGKTVA 379 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~ 379 (615)
+-+|++||.|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999987
No 357
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=65.03 E-value=6.8 Score=35.76 Aligned_cols=23 Identities=26% Similarity=0.043 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
|.-+++.|++|+|||..+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999987544333
No 358
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=64.92 E-value=18 Score=40.07 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhh--------------------------------cCcEEEEEEcCCChhHHHHHH
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKS--------------------------------LGLRVVCVYGGTGISEQISEL 446 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~l 446 (615)
+..+||.+|++.-|..++..+...+.. ....+..++|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999988888764321 123478899998876653322
Q ss_pred ---hcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEEEc
Q psy12410 447 ---KRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 447 ---~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvD 483 (615)
..| ..||||| +.+..+ .++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT-----~~l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVAT-----PTLAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEEC-----GGGGGS----SCCCBSEEEECC
T ss_pred HHHHcCCCeEEEEC-----hHHhcc----cCCCceEEEEeC
Confidence 233 7999999 344444 677888776643
No 359
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.83 E-value=3.8 Score=41.38 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556677876 456689999999873
No 360
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=64.81 E-value=3.5 Score=41.37 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRDL--IGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~~--i~~a~TGsGKT~~~ 380 (615)
++..++.|.|+ +..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 55666788764 66699999999884
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.60 E-value=3 Score=42.36 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|..++++||||||||+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999874
No 362
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.43 E-value=8.5 Score=40.92 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=35.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEE--------EcCCChhHH---HHHHhc-C-CcEEEEChHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCV--------YGGTGISEQ---ISELKR-G-AEIIVCTPGRMIDML 464 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~---~~~l~~-~-~~Iiv~Tp~~l~~~l 464 (615)
.+.++||.++++..|..+...+.......++++..+ +|+.+..+. +..+.. | ..|+|||. .+
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 463 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 463 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----ch
Confidence 367899999999999988877766422223444443 344443332 333334 4 78999993 44
Q ss_pred HhcCCCcccCCCccEEEEc
Q psy12410 465 AANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lVvD 483 (615)
..+ .++..+++||.=
T Consensus 464 ~~G----iDip~v~~VI~~ 478 (556)
T 4a2p_A 464 DEG----IDIVQCNLVVLY 478 (556)
T ss_dssp -------------CEEEEE
T ss_pred hcC----CCchhCCEEEEe
Confidence 443 678888888853
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.19 E-value=3.5 Score=41.07 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
-++++||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478889999999987543
No 364
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=63.88 E-value=8 Score=41.36 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=20.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
..++++.|.||||||.+.-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999855445544433
No 365
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.76 E-value=5 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|.||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4455667776 466689999999873
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.71 E-value=7.3 Score=38.20 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.-+.++||+|+|||+...
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567788999999998743
No 367
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=63.67 E-value=3.6 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
++..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455567776 466699999999884
No 368
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=63.22 E-value=4.6 Score=40.62 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.5
Q ss_pred cCCC--EEEEccCCCchhHHh
Q psy12410 362 SGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~--~i~~a~TGsGKT~~~ 380 (615)
.|.+ ++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 577899999999873
No 369
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=63.17 E-value=3.9 Score=41.52 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=17.6
Q ss_pred HHHHHcCCC--EEEEccCCCchhHHh
Q psy12410 357 IPAIMSGRD--LIGIAKTGSGKTVAF 380 (615)
Q Consensus 357 i~~i~~~~~--~i~~a~TGsGKT~~~ 380 (615)
+..++.|.| ++..|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 344567766 466699999999873
No 370
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=63.14 E-value=4.7 Score=34.05 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCcEEEEeCCcchHHHHHHHhhcCCC-cEEEEcCCCC
Q psy12410 572 DQGSVIVFVDKQENADSLLFHSMDPCL-EFLPLPAGIT 608 (615)
Q Consensus 572 ~~~~~LIF~~s~~~a~~l~~~L~~~g~-~~~~lhg~~~ 608 (615)
...+++|||.+=..+...+..|...|| ++..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 356899999999889999999999999 4889999984
No 371
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.98 E-value=4.3 Score=36.82 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|..++++|+.|||||+++-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998743
No 372
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.89 E-value=5.6 Score=43.93 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEc--------CCChhHH---HHHHhc-C-CcEEEEChHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYG--------GTGISEQ---ISELKR-G-AEIIVCTPGRMIDML 464 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~---~~~l~~-~-~~Iiv~Tp~~l~~~l 464 (615)
.+.++||.++++..|..++..+.......++.+..++| +.+..++ +..... | ..||||| +.+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT-----~v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT-----SVA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE-----ESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe-----chh
Confidence 46689999999999999888887753222267777755 5543333 223333 3 7899999 333
Q ss_pred HhcCCCcccCCCccEEEEccc
Q psy12410 465 AANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lVvDEa 485 (615)
..+ +++..+.+||.=..
T Consensus 472 ~~G----iDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 DEG----IDIAQCNLVILYEY 488 (696)
T ss_dssp CCC-------CCCSEEEEESC
T ss_pred hcC----CcCccCCEEEEeCC
Confidence 333 67888888886433
No 373
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=62.78 E-value=1.6 Score=46.06 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHhcC-CcEEEEChHHHHHHHHhcCCCcccC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELKRG-AEIIVCTPGRMIDMLAANSGRVTNL 474 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l 474 (615)
+.++||.||++.-|..++..+... ++.+.+++|+....... ..+..| .+||||| +.+..+ .++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----cccccC----Ccc
Confidence 467999999999988887777664 67888899887654432 222233 7899999 444444 677
Q ss_pred CCccEEE
Q psy12410 475 RRVTYIV 481 (615)
Q Consensus 475 ~~~~~lV 481 (615)
..+.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 7888876
No 374
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=62.73 E-value=2.8 Score=44.48 Aligned_cols=73 Identities=18% Similarity=0.330 Sum_probs=45.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhH---HHHHHhcC-CcEEEEChHHHHHHHHhcCCCccc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE---QISELKRG-AEIIVCTPGRMIDMLAANSGRVTN 473 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~ 473 (615)
.+.++||.|+++.-|..++..+.. .++.+.+++|+..... ....+..| ..|+|||. .+..+ .+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iD 422 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----ID 422 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CC
Confidence 356799999999988887666554 4778888888765432 23444444 78999994 44444 67
Q ss_pred CCCccEEEEc
Q psy12410 474 LRRVTYIVLD 483 (615)
Q Consensus 474 l~~~~~lVvD 483 (615)
+..+.+||.-
T Consensus 423 ip~v~~VI~~ 432 (508)
T 3fho_A 423 VSQVNLVVNY 432 (508)
T ss_dssp CTTCCEEEC-
T ss_pred ccCCCEEEEE
Confidence 8889988853
No 375
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.61 E-value=4.2 Score=35.56 Aligned_cols=17 Identities=12% Similarity=-0.171 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.++++|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999754
No 376
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=62.44 E-value=5.3 Score=34.48 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHh
Q psy12410 366 LIGIAKTGSGKTVAF 380 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~ 380 (615)
.+++||+|+|||.++
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999873
No 377
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=62.27 E-value=4.3 Score=42.48 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC-CcEEEEChHHHHHHHHhcCCCcccCCCc
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRV 477 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 477 (615)
+.++||.+|++.-|..++..+... ++.+..++|.. ....+..+..| ..|||||. .+..+ .++..
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~-----v~~~G----iDip~- 254 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEMG----ANFGA- 254 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS-----CC-------CCCSC-
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECC-----hHHhC----eecCC-
Confidence 457999999999999888777765 78888888752 22222333333 79999993 33333 55666
Q ss_pred cEEE
Q psy12410 478 TYIV 481 (615)
Q Consensus 478 ~~lV 481 (615)
.+||
T Consensus 255 ~~VI 258 (459)
T 2z83_A 255 SRVI 258 (459)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 5555
No 378
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=62.19 E-value=4.5 Score=41.30 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhHH
Q psy12410 366 LIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l 382 (615)
++|.||||+|||.++..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 67889999999987543
No 379
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=62.16 E-value=11 Score=37.04 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhccCC-CCcEEEEeCCcchHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 555 DEEQKMLKLLELLGIYQD-QGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 555 ~~~~k~~~l~~~l~~~~~-~~~~LIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
....|+..|..+|..+.. +.+||||++.....+-|-.+|...|+.+.-+.|....
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 356788888888876543 5699999999999999999999999999999998543
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.02 E-value=4.6 Score=37.50 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=16.7
Q ss_pred HHcCCCEEEEccCCCchhHHh
Q psy12410 360 IMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 360 i~~~~~~i~~a~TGsGKT~~~ 380 (615)
+..|.-++++||.|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446778899999999999874
No 381
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=62.01 E-value=5.9 Score=39.09 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=24.1
Q ss_pred CccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEec
Q psy12410 476 RVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSA 515 (615)
Q Consensus 476 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~SA 515 (615)
..+++|++..+.+ +.. ..+..++..+++...+++.|-
T Consensus 151 ~ad~ill~k~dl~-de~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVA-GEA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTC-SCT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccC-CHH--HHHHHHHHHhCCCCeEEEecc
Confidence 4668888888865 332 667777777776665555443
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.98 E-value=4.6 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHcCCCEEEEccCCCchhHHh
Q psy12410 359 AIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 359 ~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
.+..|.-+.++||+|+|||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4566788899999999999874
No 383
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=61.87 E-value=8.9 Score=44.24 Aligned_cols=77 Identities=13% Similarity=0.293 Sum_probs=55.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHhcC---CcEEEEChHHHHHHHHhcCCCc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELKRG---AEIIVCTPGRMIDMLAANSGRV 471 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~---~~Iiv~Tp~~l~~~l~~~~~~~ 471 (615)
.+.++||.|+++.-+..+...+.. ..|+.+..++|+++..+. +..+..| ++|+|||. .+..+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~~~G---- 569 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IGSEG---- 569 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CTTCS----
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hhhcC----
Confidence 467899999999888877666553 247899999999875544 3344444 89999992 23333
Q ss_pred ccCCCccEEEEcccc
Q psy12410 472 TNLRRVTYIVLDEAD 486 (615)
Q Consensus 472 ~~l~~~~~lVvDEah 486 (615)
.++..+.+||+-++.
T Consensus 570 lDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 570 RNFQFASHMVMFDLP 584 (968)
T ss_dssp SCCTTCCEEECSSCC
T ss_pred CCcccCcEEEEecCC
Confidence 778889999876665
No 384
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=61.61 E-value=3.9 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++++|+.|||||+++-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998743
No 385
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.54 E-value=4.5 Score=35.64 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
-++++|+.|||||+++-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37889999999998743
No 386
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.47 E-value=8.9 Score=43.20 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=36.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhc--------CcEEEEEEcCCChhHH---HHHHhc-C-CcEEEEChHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSL--------GLRVVCVYGGTGISEQ---ISELKR-G-AEIIVCTPGRMIDML 464 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~---~~~l~~-~-~~Iiv~Tp~~l~~~l 464 (615)
.+.++||.++++..|..+...+....... |.....++|+.+..+. +..... | ..|+|||- .+
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----ch
Confidence 36789999999999999888877642211 2333344455544333 233344 3 78999993 44
Q ss_pred HhcCCCcccCCCccEEEEc
Q psy12410 465 AANSGRVTNLRRVTYIVLD 483 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lVvD 483 (615)
..+ +++..+++||.=
T Consensus 705 ~~G----IDlp~v~~VI~y 719 (797)
T 4a2q_A 705 DEG----IDIVQCNLVVLY 719 (797)
T ss_dssp ----------CCCSEEEEE
T ss_pred hcC----CCchhCCEEEEe
Confidence 433 678888888863
No 387
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=61.15 E-value=3.3 Score=36.65 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
|.-+.++||+|||||+.+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4557889999999998754
No 388
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=60.96 E-value=20 Score=34.25 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=58.5
Q ss_pred cCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHH---HHHHh
Q psy12410 371 KTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQ---ISELK 447 (615)
Q Consensus 371 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~ 447 (615)
...+||... +.-++..+.. .+.++||.+.+...+..+...+... .++.+..++|+++..+. +....
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 356788765 4444544432 3567999999988877776665542 36788889999875444 23333
Q ss_pred cC--Cc-EEEEChHHHHHHHHhcCCCcccCCCccEEEEcccc
Q psy12410 448 RG--AE-IIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEAD 486 (615)
Q Consensus 448 ~~--~~-Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEah 486 (615)
.+ +. |+++|- .... -.++..+.+||+=+..
T Consensus 161 ~~~~~~v~L~st~-----~~g~----Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 161 NNPSVKFIVLSVK-----AGGF----GINLTSANRVIHFDRW 193 (271)
T ss_dssp HCTTCCEEEEECC-----TTCC----CCCCTTCSEEEECSCC
T ss_pred CCCCCCEEEEehh-----hhcC----CcCcccCCEEEEECCC
Confidence 33 44 566662 1222 2667777777764443
No 389
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.92 E-value=4.3 Score=42.44 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
++++|+.||+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3679999999999998754
No 390
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.75 E-value=6.5 Score=43.44 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=48.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh--hhhcCcEEEEEEcC--------CChhHHHH---HHhcC-CcEEEEChHHHHHHH
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKF--TKSLGLRVVCVYGG--------TGISEQIS---ELKRG-AEIIVCTPGRMIDML 464 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~--~~~~~~~~~~~~g~--------~~~~~~~~---~l~~~-~~Iiv~Tp~~l~~~l 464 (615)
+.++||.++++..|..+...+... +...|+.+..++|+ .+..+... .+..| .+|||||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 678999999999999988777653 22236888899998 65555433 33333 78999993 33
Q ss_pred HhcCCCcccCCCccEEE
Q psy12410 465 AANSGRVTNLRRVTYIV 481 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lV 481 (615)
..+ +++..+.+||
T Consensus 475 ~~G----IDip~v~~VI 487 (699)
T 4gl2_A 475 EEG----LDIKECNIVI 487 (699)
T ss_dssp CTT----SCCCSCCCCE
T ss_pred ccC----CccccCCEEE
Confidence 333 6788888877
No 391
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.56 E-value=5.3 Score=35.79 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+..++++|+.|||||++.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999999754
No 392
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=60.33 E-value=36 Score=32.16 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 558 QKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 558 ~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
.-...+..+|.. ...+..|||.+...|..+...|...|+.
T Consensus 174 ~~~~~~~~~l~~--~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 174 GGVDAAKKLMKL--KNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHTTS--SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC--CCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 334445555553 2457889999999999999999998875
No 393
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=60.33 E-value=15 Score=40.78 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=50.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhh-----------------------------cCcEEEEEEcCCChhHHHH---HH
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKS-----------------------------LGLRVVCVYGGTGISEQIS---EL 446 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~-----------------------------~~~~~~~~~g~~~~~~~~~---~l 446 (615)
+..+||.+|++.-|..++..+...+.. ....+..++|+.+..+... ..
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999999988888764322 1124788999988766532 23
Q ss_pred hcC-CcEEEEChHHHHHHHHhcCCCcccCCCccEEE
Q psy12410 447 KRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIV 481 (615)
Q Consensus 447 ~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lV 481 (615)
..| ..|||||. .+..+ .++..+.+||
T Consensus 317 ~~g~~~vlvaT~-----~l~~G----vdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLSAG----INTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECS-----TTGGG----CCCCBSEEEE
T ss_pred HCCCCeEEEECc-----Hhhcc----CCCCceEEEE
Confidence 334 79999993 44433 6677776644
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.20 E-value=4.9 Score=35.12 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
+++++.|+.|||||++.-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999998543
No 395
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.07 E-value=5.5 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+++.||+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998753
No 396
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.97 E-value=19 Score=38.70 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhh----cCcEEEEEEcCCCh--hHHHHHHhcC-Cc---EEEEChHHHHHHHHhc
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKS----LGLRVVCVYGGTGI--SEQISELKRG-AE---IIVCTPGRMIDMLAAN 467 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~----~~~~~~~~~g~~~~--~~~~~~l~~~-~~---Iiv~Tp~~l~~~l~~~ 467 (615)
.+.++||.|+++.-|..++..+...... .+-.+..++|.... ...+..+..+ .. |+||| +++..+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~~G 512 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLTTG 512 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTTTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----ChhhcC
Confidence 3678999999999999999988876442 12235666776643 2223444443 23 77777 344444
Q ss_pred CCCcccCCCccEEEEccc
Q psy12410 468 SGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 468 ~~~~~~l~~~~~lVvDEa 485 (615)
.++..+.+||++..
T Consensus 513 ----iDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 513 ----VDAPTCKNVVLARV 526 (590)
T ss_dssp ----CCCTTEEEEEEESC
T ss_pred ----ccchheeEEEEEec
Confidence 77888999998654
No 397
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=59.95 E-value=64 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=13.5
Q ss_pred EEEccCCCchhHHhHHHHH
Q psy12410 367 IGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 367 i~~a~TGsGKT~~~~l~~l 385 (615)
++.+.-|.|||++.+..+.
T Consensus 5 v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHH
Confidence 4457789999998654443
No 398
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.93 E-value=11 Score=38.48 Aligned_cols=50 Identities=4% Similarity=-0.036 Sum_probs=40.1
Q ss_pred HHHHHhccCCCCcEEEEeCCcchHHHHHHHhhc---CCCcEEEEcCCCChhhh
Q psy12410 563 LLELLGIYQDQGSVIVFVDKQENADSLLFHSMD---PCLEFLPLPAGITRFIW 612 (615)
Q Consensus 563 l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~---~g~~~~~lhg~~~~~eR 612 (615)
+..++.....+.++||.|+++.-|..++..|.. .|+.+..+||+.+..+|
T Consensus 54 l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~ 106 (414)
T 3oiy_A 54 MMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEK 106 (414)
T ss_dssp HHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHH
T ss_pred HHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhH
Confidence 333344334567899999999999999999987 58899999999988554
No 399
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.83 E-value=1.1e+02 Score=28.53 Aligned_cols=40 Identities=8% Similarity=-0.062 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCC
Q psy12410 557 EQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCL 598 (615)
Q Consensus 557 ~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~ 598 (615)
..-...+..+|... .....|||.+...|..+...|...|+
T Consensus 180 ~~~~~~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 180 VTSERVMRQVIDSG--IPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHHHHHHTT--CCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC--CCCCEEEECCchHHHHHHHHHHhCCC
Confidence 34444555666553 45689999999999999999999887
No 400
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.80 E-value=5.6 Score=36.28 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.1
Q ss_pred EEEEccCCCchhHHhHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~ 384 (615)
.+++|+.|||||+.+...+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999754433
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.79 E-value=4.4 Score=36.25 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++++|++|||||+++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999999754
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.74 E-value=7.2 Score=34.73 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
+..++++|+.|||||++.-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999997543
No 403
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=59.74 E-value=73 Score=30.31 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 573 QGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 573 ~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
..+.-|||.+...|.-+...|...|+.
T Consensus 196 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 196 DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999998875
No 404
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.48 E-value=4.9 Score=38.01 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.++++||+|+|||+.+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999874
No 405
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.11 E-value=6.9 Score=38.70 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
++-+.+++++|+|||++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999987543
No 406
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=59.09 E-value=7.1 Score=38.23 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
|.-+.++||+|+|||+...
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4557889999999998743
No 407
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.90 E-value=4.7 Score=40.82 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.1
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q psy12410 356 AIPAIMSGRD--LIGIAKTGSGKTVA 379 (615)
Q Consensus 356 ~i~~i~~~~~--~i~~a~TGsGKT~~ 379 (615)
++..++.|.| ++..|.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4555667776 46668999999987
No 408
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=58.76 E-value=6.5 Score=34.20 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCcEEEEeCCcc---------hHHHHHHHhhcCCCcEEEEcCCCCh
Q psy12410 573 QGSVIVFVDKQE---------NADSLLFHSMDPCLEFLPLPAGITR 609 (615)
Q Consensus 573 ~~~~LIF~~s~~---------~a~~l~~~L~~~g~~~~~lhg~~~~ 609 (615)
..++||||.+-. .+..++..|...||.+..|.||+..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 568999999873 5888899999999999999998754
No 409
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.34 E-value=5 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|.-++++|++|||||+++-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668889999999998743
No 410
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=58.30 E-value=1.2e+02 Score=28.51 Aligned_cols=43 Identities=9% Similarity=-0.086 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhccC-CCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 557 EQKMLKLLELLGIYQ-DQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 557 ~~k~~~l~~~l~~~~-~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
..-...+..+|.... ...+..|||.+...|.-+...|...|+.
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 217 (295)
T 3hcw_A 174 EVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp HHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 333445555665442 2357899999999999999999998875
No 411
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=58.11 E-value=5.6 Score=35.57 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
.-++++||+|+|||+.+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346889999999998743
No 412
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=57.89 E-value=13 Score=42.61 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEE--------EEEEcCCChhHH---HHHHhc-C-CcEEEEChHHHHHHH
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRV--------VCVYGGTGISEQ---ISELKR-G-AEIIVCTPGRMIDML 464 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~---~~~l~~-~-~~Iiv~Tp~~l~~~l 464 (615)
.+.++||.++++..|..+...+.......++++ ..++|+++..+. +..+.. | ..||||| +.+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT-----~~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----SVA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEE-----CC-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe-----Cch
Confidence 467899999999999999888877522223333 333455544333 333344 3 7899999 344
Q ss_pred HhcCCCcccCCCccEEEEccc
Q psy12410 465 AANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 465 ~~~~~~~~~l~~~~~lVvDEa 485 (615)
..+ +++..+++||.=++
T Consensus 705 ~eG----IDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 DEG----IDIVQCNLVVLYEY 721 (936)
T ss_dssp ---------CCCCSEEEEESC
T ss_pred hcC----CcchhCCEEEEeCC
Confidence 443 67888888886433
No 413
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=57.87 E-value=6.7 Score=38.94 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
...++++.||+|+|||.++
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999874
No 414
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=57.86 E-value=5.6 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
.-++++|+.|||||+++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999999754
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.70 E-value=4.5 Score=37.66 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=12.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|.-+.++||+|+|||++.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666888999999999874
No 416
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.67 E-value=6.3 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.2
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
.++++|+.|||||.++-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999987543
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=57.53 E-value=11 Score=33.29 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=12.7
Q ss_pred EEEEccCCCchhHHh
Q psy12410 366 LIGIAKTGSGKTVAF 380 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~ 380 (615)
+.+.|+.|||||...
T Consensus 7 i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999863
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.50 E-value=5.9 Score=35.56 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.-++++|++|||||++.-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35668999999999998753
No 419
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=57.47 E-value=13 Score=37.47 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=16.1
Q ss_pred ChHHHHHHHHhcCCCcccCCCccEEEEccc
Q psy12410 456 TPGRMIDMLAANSGRVTNLRRVTYIVLDEA 485 (615)
Q Consensus 456 Tp~~l~~~l~~~~~~~~~l~~~~~lVvDEa 485 (615)
++..+..++..- ..+..+++||||=.
T Consensus 243 ~~~~~~~ll~~l----~~~~~yD~VIID~p 268 (373)
T 3fkq_A 243 SYADIDTLIGNI----QGMDNYDEIIVDLP 268 (373)
T ss_dssp CHHHHHHHHHHH----HHTSCCSEEEEECC
T ss_pred CHHHHHHHHHHH----HhcCCCCEEEEeCC
Confidence 556665555432 22457899999943
No 420
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.37 E-value=3.1 Score=39.78 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.+++.||+|+|||.++-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999998743
No 421
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.24 E-value=18 Score=35.66 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhc
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILD 390 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~ 390 (615)
+-++||+|||||+.+ -++..++.
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 566799999999874 34444443
No 422
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.23 E-value=6.1 Score=35.02 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.1
Q ss_pred EEEEccCCCchhHHhHHHHHHHHh
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
.+++|++|+|||.++- ++..++
T Consensus 29 ~~i~G~NGsGKStll~--ai~~~l 50 (182)
T 3kta_A 29 TAIVGANGSGKSNIGD--AILFVL 50 (182)
T ss_dssp EEEEECTTSSHHHHHH--HHHHHT
T ss_pred EEEECCCCCCHHHHHH--HHHHHH
Confidence 6889999999998743 444443
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=57.19 E-value=4.7 Score=36.45 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+..++++|+.|||||++.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999999843
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=57.17 E-value=5.6 Score=37.08 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l 382 (615)
+..+++.|++|||||++.-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998543
No 425
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.13 E-value=6 Score=35.33 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12410 365 DLIGIAKTGSGKTVAF 380 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~ 380 (615)
.+.+.||+|+|||+.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999874
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.13 E-value=5.9 Score=39.35 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998743
No 427
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=57.02 E-value=1.4e+02 Score=33.21 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhc---C-C---cEEEEChHHHHHHHHhcCCC
Q psy12410 398 DGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKR---G-A---EIIVCTPGRMIDMLAANSGR 470 (615)
Q Consensus 398 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~-~---~Iiv~Tp~~l~~~l~~~~~~ 470 (615)
.+.++||.+.....+..+...+. ..++.+..++|+++.......+.. + . -+|++| .....+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~agg~G--- 638 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLS----IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----RAGGLG--- 638 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHH----HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----HHHTTT---
T ss_pred CCCeEEEEechHHHHHHHHHHHH----hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----ccccCC---
Confidence 46689999998877666555444 348889999999887766544432 1 1 245554 344433
Q ss_pred cccCCCccEEEEccccccccCCcHHHHHHHHHhcCC--CCcE----EEEeccCChHHHHHHHH
Q psy12410 471 VTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP--DRQT----VMFSATFPRQMEALARR 527 (615)
Q Consensus 471 ~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~--~~q~----l~~SAT~~~~~~~~~~~ 527 (615)
++|..+..||+=+.+ |.....++.+-+..+. ..++ ++...|+-..+...+..
T Consensus 639 -lNL~~a~~VI~~D~~----wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 639 -INLMTADTVVIFDSD----WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp -CCCTTCCEEEESSCC----SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred -CCccccceEEEecCC----CChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 778888888875554 4444555555333321 1222 34455655444444443
No 428
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=56.35 E-value=10 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.059 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|.-+.++||+|+|||+.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998744
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.21 E-value=5.1 Score=36.38 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.-+++.|+.|||||++.-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35568899999999999754
No 430
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.17 E-value=7.8 Score=40.60 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
...++|++||+|+|||.++-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34689999999999999754
No 431
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=56.15 E-value=16 Score=34.92 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=34.1
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhcCCC-cEEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMDPCL-EFLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~~g~-~~~~lhg~~~~ 609 (615)
....+++|||.+=..+..++..|...|| ++..|.|++..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3467899999999999999999999999 59999999874
No 432
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=55.89 E-value=5.6 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.-++++|+.|||||++.-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999999754
No 433
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.88 E-value=8.1 Score=38.56 Aligned_cols=44 Identities=14% Similarity=-0.033 Sum_probs=25.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|.-+++.|++|+|||...+..+.+..+. ....+.+..++|+.-.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECC
Confidence 4567899999999998754434332211 0011135567777643
No 434
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=55.48 E-value=7.6 Score=34.43 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..++++|+.|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999999754
No 435
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=55.47 E-value=1.4e+02 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 556 EEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 556 ~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
...-...+..+|... ..+.-|||.+...|..+...|.+.|+.
T Consensus 171 ~~~~~~~~~~~l~~~--~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 171 RPGGYLAASRLLALE--VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHHHSS--SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCC--CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 334445556666543 457899999999999999999998875
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=55.38 E-value=7.8 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.2
Q ss_pred CEEEEccCCCchhHHhHHH
Q psy12410 365 DLIGIAKTGSGKTVAFVLP 383 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l~ 383 (615)
.+|+.||+||||++++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788899999999875543
No 437
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.32 E-value=6.9 Score=35.99 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..+++.|+.|||||++.-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999754
No 438
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.09 E-value=6.3 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q psy12410 364 RDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~ 380 (615)
+.++++||+|+|||+.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 35899999999999874
No 439
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.90 E-value=7.5 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.9
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
..++++|+.|||||++.-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5689999999999998543
No 440
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=54.80 E-value=1.2e+02 Score=27.05 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=47.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHhcCC-----CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhhhcCc-EEEEEEc
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQP-----PLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL-RVVCVYG 435 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~-----~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~-~~~~~~g 435 (615)
.|-.+-+....|-|=|+.+.+|+........ ......+.+|||+-........+...+.. .++ .+..+
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~----~g~~~v~~a-- 92 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKK----MGVSEVEQC-- 92 (206)
T ss_dssp ------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHH----TTCSEEEEE--
T ss_pred cCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHH----cCCCeeeee--
Confidence 3455677778899999988888754322111 01122356788888876665554444433 344 33222
Q ss_pred CCChhHHHHHHhcCCcEEEEChHHHHHHHHhcC-----CCcccCCCccEEEEccccccccCCcHHHHHHHHHh---cCCC
Q psy12410 436 GTGISEQISELKRGAEIIVCTPGRMIDMLAANS-----GRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN---VRPD 507 (615)
Q Consensus 436 ~~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-----~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~---~~~~ 507 (615)
.+....+..+.... .....-..+++||+|= .|.+++-...+..|... ..+.
T Consensus 93 -------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 93 -------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred -------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCC
Confidence 23333344443210 0001123577899982 24444423333333332 3577
Q ss_pred CcEEEEeccC
Q psy12410 508 RQTVMFSATF 517 (615)
Q Consensus 508 ~q~l~~SAT~ 517 (615)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 8899999976
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=54.63 E-value=8.3 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=21.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCcHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRE 410 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 410 (615)
++|.|++|||||..+.- .. . . +..++||+.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~----la-~------~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA----LI-G------D-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH----HH-C------S-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH----HH-h------c-CCCeEEEecCCC
Confidence 68899999999976332 22 1 1 334788877443
No 442
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.61 E-value=7.2 Score=35.66 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHhH
Q psy12410 350 TPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 350 ~~~Q~~~i~~i~~~~~~i~~a~TGsGKT~~~~ 381 (615)
++.+... ..+..+..++++|+.|+|||.++-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 4444444 334456778899999999998743
No 443
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=54.48 E-value=6.8 Score=36.28 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
...++++|++|||||++.-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999999743
No 444
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.39 E-value=8.1 Score=34.85 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=27.1
Q ss_pred CCCccEEEEcccccc--ccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 474 LRRVTYIVLDEADRM--FDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 474 l~~~~~lVvDEah~~--~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
+...++|||||+..+ .+..|...+..++.... .+|+-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~---~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG---TIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS---CCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC---cEEEEEeec
Confidence 466789999998777 44447777777776432 245446665
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.35 E-value=7.1 Score=39.38 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.7
Q ss_pred EEEEccCCCchhHHhH
Q psy12410 366 LIGIAKTGSGKTVAFV 381 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~ 381 (615)
.+++||||+|||.++-
T Consensus 26 ~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998753
No 446
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=54.17 E-value=9.3 Score=38.42 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
|.-+.++|++|+|||+...
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4457888999999998743
No 447
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.92 E-value=8 Score=33.77 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
+.++++|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999999754
No 448
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=53.85 E-value=8.4 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhHH
Q psy12410 365 DLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~l 382 (615)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999998543
No 449
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.85 E-value=11 Score=41.03 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHcCCCEEEEccCCCchhHHh
Q psy12410 358 PAIMSGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 358 ~~i~~~~~~i~~a~TGsGKT~~~ 380 (615)
..+..+..+++.||+|+|||+.+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34557889999999999999874
No 450
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.56 E-value=6.8 Score=38.02 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
.-+|++|++|||||+++-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999998743
No 451
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.46 E-value=6.5 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
|.-+.++||+|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678899999999864
No 452
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.44 E-value=7.2 Score=35.93 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..+.+.|++|||||+++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998754
No 453
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=53.42 E-value=21 Score=39.97 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHHHHHhcC--CcEEEEC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG--AEIIVCT 456 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~Iiv~T 456 (615)
+..+||.|.|++-+..+...+.. .|+.+.+++|+....+.......+ ..|+|||
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~----~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN----KGIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----CCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC
Confidence 34589999999988887665554 488999999886544332222222 5899999
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.39 E-value=8.7 Score=35.03 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHh
Q psy12410 366 LIGIAKTGSGKTVAF 380 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~ 380 (615)
.+++||+|+|||.++
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 688899999999874
No 455
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=53.36 E-value=48 Score=34.47 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.3
Q ss_pred HcCCCEEEEccCCCchhHHhHHHHHH
Q psy12410 361 MSGRDLIGIAKTGSGKTVAFVLPLLR 386 (615)
Q Consensus 361 ~~~~~~i~~a~TGsGKT~~~~l~~l~ 386 (615)
..|+.+++.++.|.|||......+.+
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhh
Confidence 46888999999999999875544433
No 456
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.34 E-value=7.2 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.++++|+.|||||++.-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998754
No 457
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.96 E-value=7.3 Score=34.61 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.++++|+.|||||++.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999754
No 458
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=52.66 E-value=7.6 Score=35.53 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+++.|+.|||||++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999854
No 459
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=52.63 E-value=7.1 Score=34.52 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.|..++++|+.|||||++.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998743
No 460
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.53 E-value=9.4 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12410 364 RDLIGIAKTGSGKTVAFVL 382 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~l 382 (615)
+-+|+.||+||||++++-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4467889999999987544
No 461
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=52.14 E-value=39 Score=31.99 Aligned_cols=38 Identities=5% Similarity=-0.214 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 560 MLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 560 ~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
...+..+|... ..+.-|||.+...|..+...|...|+.
T Consensus 176 ~~~~~~~l~~~--~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 176 RDFGQRLMQSS--DRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHTTSS--SCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhCC--CCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34455555442 347889999999999999999998874
No 462
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=52.03 E-value=14 Score=35.63 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHhc--cCCCCcEEEEeCCcchHHHHHHHhh-cCCC-cEEEEcCCCCh
Q psy12410 564 LELLGI--YQDQGSVIVFVDKQENADSLLFHSM-DPCL-EFLPLPAGITR 609 (615)
Q Consensus 564 ~~~l~~--~~~~~~~LIF~~s~~~a~~l~~~L~-~~g~-~~~~lhg~~~~ 609 (615)
...+.. .....+++|||.+-..+-.++..|. ..|| .+..|.|++..
T Consensus 222 ~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 222 RALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 271 (285)
T ss_dssp HHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred HHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHH
Confidence 344444 3456789999999888988999998 8999 68899998753
No 463
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=51.77 E-value=8.7 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12410 364 RDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 364 ~~~i~~a~TGsGKT~~~~ 381 (615)
..++++|+.|||||++.-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999999854
No 464
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=51.05 E-value=8.4 Score=34.62 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+++.|+.|||||++.-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999999744
No 465
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=50.97 E-value=68 Score=31.42 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCCccEEEEccccc-cccCCcHHHHHHHHHhcCCCCcEEEEeccC
Q psy12410 474 LRRVTYIVLDEADR-MFDMGFEPQVMRIIDNVRPDRQTVMFSATF 517 (615)
Q Consensus 474 l~~~~~lVvDEah~-~~~~~~~~~~~~i~~~~~~~~q~l~~SAT~ 517 (615)
+....+|||||+|. +. ......+..++...+++..+|+.+.++
T Consensus 74 f~~~kvvii~~~~~kl~-~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPN-AAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCC-TTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCC-hHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 56778999999997 54 444566777777655555555554443
No 466
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=50.95 E-value=18 Score=31.19 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=28.6
Q ss_pred HHhccCCCCcEEEEeC-CcchHHHHHHHh--------hcCCC-cEEEEcCCCCh
Q psy12410 566 LLGIYQDQGSVIVFVD-KQENADSLLFHS--------MDPCL-EFLPLPAGITR 609 (615)
Q Consensus 566 ~l~~~~~~~~~LIF~~-s~~~a~~l~~~L--------~~~g~-~~~~lhg~~~~ 609 (615)
++..+....+++|||. +-..+...+..| ...|| ++..|.||+..
T Consensus 78 l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 78 LVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp HHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred HHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 3333345568999998 654444444443 45799 68899999864
No 467
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.91 E-value=8.9 Score=38.73 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHh
Q psy12410 366 LIGIAKTGSGKTVAFVLPLLRHIL 389 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~l~~~~ 389 (615)
.+++|+||+|||.+ +-++.+++
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
No 468
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.84 E-value=99 Score=30.06 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 559 KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 559 k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
-...+..+|... ..+.-|||.+...|.-+...|...|+.
T Consensus 234 ~~~~~~~ll~~~--~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 234 GREMTQAMLERS--PDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHHHS--TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcC--CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 344555666543 357899999999999999999998874
No 469
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=50.52 E-value=18 Score=33.02 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=31.8
Q ss_pred CcEEEEeCCcchHHHHHHHhhcC-----CCcEEEEcCCCChhh
Q psy12410 574 GSVIVFVDKQENADSLLFHSMDP-----CLEFLPLPAGITRFI 611 (615)
Q Consensus 574 ~~~LIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~e 611 (615)
.++||.|+++.-+..++..+... ++.+..+||+.+..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 125 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 125 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH
Confidence 48999999999999988877653 789999999987544
No 470
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=50.24 E-value=1.1e+02 Score=29.64 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=29.1
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 559 KMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 559 k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
-...+..+|... ..+.-|||.+...|.-+...|...|+.
T Consensus 226 ~~~~~~~ll~~~--~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 226 GADMLDRALAER--PDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHHHHC--TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC--CCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 334455556543 357899999999999999999998875
No 471
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.21 E-value=7.7 Score=35.28 Aligned_cols=18 Identities=28% Similarity=-0.021 Sum_probs=14.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
+.-+.+.|++|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344678899999999874
No 472
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=50.03 E-value=59 Score=33.98 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHH---cCCCEEEEccCCCchhHHh
Q psy12410 355 QAIPAIM---SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 355 ~~i~~i~---~~~~~i~~a~TGsGKT~~~ 380 (615)
.+|..++ .|+.+.+.|+.|+|||...
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHH
Confidence 4555544 6889999999999999984
No 473
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=50.01 E-value=8.9 Score=34.59 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q psy12410 365 DLIGIAKTGSGKTVAF 380 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~ 380 (615)
.++++|+.|||||++.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999874
No 474
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=49.99 E-value=47 Score=35.35 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.0
Q ss_pred CCCcEEEEeCCcchHHHHHHH
Q psy12410 572 DQGSVIVFVDKQENADSLLFH 592 (615)
Q Consensus 572 ~~~~~LIF~~s~~~a~~l~~~ 592 (615)
.+|.+|||+++....+.++..
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~ 412 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR 412 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT
T ss_pred CCCCEEEEecCHHHHHHHHHh
Confidence 367899999999999999873
No 475
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=49.98 E-value=8.7 Score=34.88 Aligned_cols=18 Identities=28% Similarity=-0.060 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
+.-+.++|++|||||+++
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999874
No 476
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=49.81 E-value=16 Score=43.76 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCCccEEEEccccccccCCcHHHHHHHHHhcCCCCcEEEEe
Q psy12410 474 LRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 514 (615)
Q Consensus 474 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~q~l~~S 514 (615)
+++-.++|+||+=.-+|......+...+..+..++-+|+++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46677999999998888877777777777665555444444
No 477
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.80 E-value=9.1 Score=39.66 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12410 363 GRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~ 380 (615)
.++++++||+|+|||+++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999874
No 478
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=49.72 E-value=9.1 Score=34.67 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHh
Q psy12410 366 LIGIAKTGSGKTVAF 380 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~ 380 (615)
+.+.|+.|||||++.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999874
No 479
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.69 E-value=11 Score=37.08 Aligned_cols=24 Identities=21% Similarity=0.007 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLR 386 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~ 386 (615)
|.-+++.|++|+|||...+-.+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999875544443
No 480
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=49.57 E-value=13 Score=35.57 Aligned_cols=39 Identities=0% Similarity=-0.027 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCcchHHHHHHHhhcCCC-cEEEEcCCCCh
Q psy12410 571 QDQGSVIVFVDKQENADSLLFHSMDPCL-EFLPLPAGITR 609 (615)
Q Consensus 571 ~~~~~~LIF~~s~~~a~~l~~~L~~~g~-~~~~lhg~~~~ 609 (615)
....+++|||.+-..+..++..|...|| ++..|.|++..
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 3567899999999899999999999999 58899998753
No 481
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=49.51 E-value=8.9 Score=34.64 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+.++|++|||||++.-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 37889999999998743
No 482
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.38 E-value=9.5 Score=34.60 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.-++++|+.|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35568999999999999754
No 483
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.21 E-value=16 Score=40.37 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhhh--------------------------cCcEEEEEEcCCChhHHHHH---HhcC
Q psy12410 399 GPMAIIMSPTRELCMQIGKEAKKFTKS--------------------------LGLRVVCVYGGTGISEQISE---LKRG 449 (615)
Q Consensus 399 ~~~~lil~Ptr~La~q~~~~~~~~~~~--------------------------~~~~~~~~~g~~~~~~~~~~---l~~~ 449 (615)
+..+||.+|++.-|..++..+...+.. .+..+..++|+.+..++... ...|
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 557999999999999888877764321 11346778999887665332 2334
Q ss_pred -CcEEEEChHHHHHHHHhcCCCcccCCCccEEEE
Q psy12410 450 -AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVL 482 (615)
Q Consensus 450 -~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~lVv 482 (615)
..|||||. .+..+ .++..+.+||.
T Consensus 322 ~~~vlvaT~-----~l~~G----idip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----TLAAG----VNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----TTTSS----SCCCBSEEEEC
T ss_pred CCeEEEECc-----HHhcc----CCCCceEEEEc
Confidence 79999994 33333 66777776553
No 484
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=49.16 E-value=9.5 Score=35.03 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..+++.|+.|||||++.-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999999754
No 485
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.12 E-value=7.9 Score=34.18 Aligned_cols=19 Identities=21% Similarity=-0.010 Sum_probs=11.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+.-++++|+.|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999999854
No 486
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=48.85 E-value=45 Score=34.95 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHH---cCCCEEEEccCCCchhHHhHHHHH
Q psy12410 355 QAIPAIM---SGRDLIGIAKTGSGKTVAFVLPLL 385 (615)
Q Consensus 355 ~~i~~i~---~~~~~i~~a~TGsGKT~~~~l~~l 385 (615)
.+|..++ .|+.+.+.|+.|+|||..++-.|.
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~ 197 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTII 197 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHH
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHH
Confidence 4555554 789999999999999988433333
No 487
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=48.83 E-value=9.9 Score=32.98 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
.+++.|+.|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998744
No 488
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=48.75 E-value=9.6 Score=37.34 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12410 362 SGRDLIGIAKTGSGKTVAF 380 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~ 380 (615)
.|.-+.++||+|+|||+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6778889999999999874
No 489
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.71 E-value=9.4 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12410 363 GRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~ 381 (615)
+..++++|+.|||||+..-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568899999999998743
No 490
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=48.69 E-value=1.6e+02 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHhH
Q psy12410 365 DLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~~~ 381 (615)
-+++.+..|+|||....
T Consensus 16 i~~~~GkgGvGKTTl~~ 32 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTG 32 (262)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHH
Confidence 36778999999998744
No 491
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.66 E-value=5.5 Score=35.33 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.3
Q ss_pred EEEEccCCCchhHHhH
Q psy12410 366 LIGIAKTGSGKTVAFV 381 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~ 381 (615)
+.++|++|||||+...
T Consensus 5 v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEESCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6678999999998754
No 492
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=48.58 E-value=7.1 Score=42.31 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHH
Q psy12410 365 DLIGIAKTGSGKTVA 379 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~ 379 (615)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999976
No 493
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=48.54 E-value=78 Score=26.31 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHH
Q psy12410 365 DLIGIAKTGSGKTVA 379 (615)
Q Consensus 365 ~~i~~a~TGsGKT~~ 379 (615)
.++++|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 494
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=48.51 E-value=9.3 Score=34.72 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFV 381 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~ 381 (615)
.+.-++++|+.|||||++.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668999999999999854
No 495
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=48.49 E-value=19 Score=33.18 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=33.6
Q ss_pred CCCcEEEEeCCcchHHHHHHHhhcC-----CCcEEEEcCCCChhhh
Q psy12410 572 DQGSVIVFVDKQENADSLLFHSMDP-----CLEFLPLPAGITRFIW 612 (615)
Q Consensus 572 ~~~~~LIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR 612 (615)
...++||.|+++.-|..++..+... ++.+..++|+....++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 136 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD 136 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHH
Confidence 3468999999999999998888653 7889999999876543
No 496
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=48.48 E-value=1.3e+02 Score=28.37 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=23.4
Q ss_pred CCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 573 QGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 573 ~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
..+.-|||.+...|..+...|.+.|+.
T Consensus 201 ~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 201 HMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 457889999999999999999998874
No 497
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=48.40 E-value=1.7e+02 Score=27.08 Aligned_cols=179 Identities=11% Similarity=0.117 Sum_probs=89.8
Q ss_pred CCeEEEEcCcH--HHHHHHHHHHHHhhhhcCcEEEEEEcCCChhHHH---HHHh-cCCcEEEECh---HHHHHHHHhcCC
Q psy12410 399 GPMAIIMSPTR--ELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQI---SELK-RGAEIIVCTP---GRMIDMLAANSG 469 (615)
Q Consensus 399 ~~~~lil~Ptr--~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~-~~~~Iiv~Tp---~~l~~~l~~~~~ 469 (615)
...+.|++|.. ....++...+...+...|+.+.++........+. ..+. .+++-||..| ..++..+..
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~--- 83 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILH--- 83 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHT---
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHH---
Confidence 44566666643 2445666667777777788887776655443332 2222 2455444333 122232221
Q ss_pred CcccCCCccEEEEccccc-----cccCCcHHHHHHHHHhc--CCCCcEEEEeccCC--hHHHHHHHHHcCCCEEEEECCc
Q psy12410 470 RVTNLRRVTYIVLDEADR-----MFDMGFEPQVMRIIDNV--RPDRQTVMFSATFP--RQMEALARRILNKPIEIQVGGR 540 (615)
Q Consensus 470 ~~~~l~~~~~lVvDEah~-----~~~~~~~~~~~~i~~~~--~~~~q~l~~SAT~~--~~~~~~~~~~~~~p~~i~~~~~ 540 (615)
..+-+|++|-.-. ....++......+..++ ...+++.+++.... .........|...--..
T Consensus 84 -----~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~----- 153 (276)
T 3jy6_A 84 -----QQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDV----- 153 (276)
T ss_dssp -----TSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE-----
T ss_pred -----CCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC-----
Confidence 2344555553211 01122233333232222 23456777776553 22233444443322111
Q ss_pred ccccCCeEEEEEec---ChhHHHHHHHHHHhccCCCCcEEEEeCCcchHHHHHHHhhcCCCc
Q psy12410 541 SVVCKEVEQHVIVL---DEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLE 599 (615)
Q Consensus 541 ~~~~~~i~~~~~~~---~~~~k~~~l~~~l~~~~~~~~~LIF~~s~~~a~~l~~~L~~~g~~ 599 (615)
.. .++.. ........+..+|.. ...+..|||.+...|..+...|...|+.
T Consensus 154 -----~~--~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 154 -----DV--LEVSESSYNHSEVHQRLTQLITQ--NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp -----EE--EEECSSSCCHHHHHHHHHHHHHS--SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred -----Cc--EEEeccccCCcHHHHHHHHHHhc--CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 00 11111 223344445555533 3567899999999999999999998875
No 498
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=48.17 E-value=17 Score=44.29 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHhcCCCCCCCCCCeEEEEcCc
Q psy12410 363 GRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPT 408 (615)
Q Consensus 363 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 408 (615)
|..++++|++|+|||..++..+++.+. .+..++|+.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~--------~G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh--------CCCceEEEEec
Confidence 578999999999999986655555542 24567777643
No 499
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=47.84 E-value=9.7 Score=34.80 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHhHHHH
Q psy12410 366 LIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 366 ~i~~a~TGsGKT~~~~l~~ 384 (615)
+++.|+.|||||++.-..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 500
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=47.70 E-value=10 Score=35.79 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12410 362 SGRDLIGIAKTGSGKTVAFVLPL 384 (615)
Q Consensus 362 ~~~~~i~~a~TGsGKT~~~~l~~ 384 (615)
.+..+.+.||+|||||+++-+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Done!