RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12410
(615 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 191 bits (485), Expect = 8e-58
Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 11/212 (5%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGR-DLIGIAKTGSGKTVAFVLPLL 385
+ + +S IL+A++ + +EKPT IQ + IP ++ +++ A+TGSGKT +F +PL+
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445
+ + G AII++PTREL +Q+ E + + L++ +YGG I QI
Sbjct: 65 ELVNENN------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 118
Query: 446 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVR 505
LK A I+V TPGR++D + + NL+ V Y +LDEAD M +MGF V +I++
Sbjct: 119 LK-NANIVVGTPGRILDHI---NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
Query: 506 PDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
D++ ++FSAT PR++ LA++ + I+
Sbjct: 175 KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 185 bits (469), Expect = 4e-55
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 15/243 (6%)
Query: 306 KYKEELEGIRVKGKG--CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSG 363
KY + + + V G I+ + + + I + + +Y++PTPIQ AIPAI+
Sbjct: 1 KY-DSIP-VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH 58
Query: 364 RDLIGIAKTGSGKTVAFVLPLLRHILDQPP----LEETDGPMAIIMSPTRELCMQIGKEA 419
RD++ A+TGSGKT AF++P++ H++ Q +T P +I++PTREL +QI E+
Sbjct: 59 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118
Query: 420 KKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479
+KF+ + LR VYGG QI E++ G ++V TPGR++D + N +L Y
Sbjct: 119 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLEFCKY 175
Query: 480 IVLDEADRMFDMGFEPQVMRIIDNVR----PDRQTVMFSATFPRQMEALARRILNKPIEI 535
IVLDEADRM DMGFEPQ+ +II+ +RQT+MFSATFP++++ LA L I +
Sbjct: 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
Query: 536 QVG 538
VG
Sbjct: 236 TVG 238
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 175 bits (445), Expect = 7e-52
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%)
Query: 310 ELEGIRVKGKGCPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGI 369
++ + + T+ G+ + +L + +EKP+ IQ +AI I+ GRD+I
Sbjct: 1 DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQ 60
Query: 370 AKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLR 429
+++G+GKT F + +L+ + Q A+I++PTREL +QI K + ++
Sbjct: 61 SQSGTGKTATFSISVLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQ 115
Query: 430 VVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMF 489
GGT + E I +L G ++ TPGR+ DM R R + +VLDEAD M
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM---IRRRSLRTRAIKMLVLDEADEML 172
Query: 490 DMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538
+ GF+ Q+ + + P Q V+ SAT P ++ + + + PI I V
Sbjct: 173 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 175 bits (443), Expect = 1e-51
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 322 PRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFV 381
+ + + + + +L + +E+P+ IQ +AI I+ G D++ A++G+GKT F
Sbjct: 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 65
Query: 382 LPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE 441
+ L+ I P A++++PTREL +QI K + ++V GGT E
Sbjct: 66 IAALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 120
Query: 442 QISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRII 501
L R A+I+V TPGR+ D R ++ +LDEAD M GF+ Q+ +I
Sbjct: 121 DAEGL-RDAQIVVGTPGRVFDN---IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 176
Query: 502 DNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
+ P Q V+ SAT P + + + + P+ I V
Sbjct: 177 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 174 bits (442), Expect = 2e-51
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 9/219 (4%)
Query: 321 CPRPIKTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAF 380
+ ++ +S+ +L + +EKP+ IQ +AI + G D+I A++G+GKT F
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 381 VLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGIS 440
+ +L+ I A++++PTREL QI K +G GGT +
Sbjct: 67 AISILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR 121
Query: 441 EQISELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMR 499
++ +L+ IIV TPGR+ DML + R + + + VLDEAD M GF+ Q+
Sbjct: 122 AEVQKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 178
Query: 500 IIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538
I + + Q V+ SAT P + + ++ + PI I V
Sbjct: 179 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 163 bits (413), Expect = 2e-47
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
+ + ++L A+ +E P+ +Q + IP + G D++ AK+G GKT FVL L+
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL-RVVCVYGGTGISEQISE 445
+ ++M TREL QI KE ++F+K + +V +GG I +
Sbjct: 62 QLEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 116
Query: 446 LKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-MGFEPQVMRIIDN 503
LK+ I+V TPGR++ + + NL+ + + +LDE D+M + + V I
Sbjct: 117 LKKNCPHIVVGTPGRILAL---ARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 504 VRPDRQTVMFSATFPRQMEALARRILNKPIEIQV 537
++Q +MFSAT +++ + R+ + P+EI V
Sbjct: 174 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 157 bits (396), Expect = 5e-45
Identities = 71/212 (33%), Positives = 120/212 (56%), Gaps = 8/212 (3%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
T+ + +++L + + +EKP+PIQ +AIP ++GRD++ AK G+GKT AFV+P L
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
+ + A+IM PTREL +Q + + K G+ + GGT + + I L
Sbjct: 62 KVKPKLN-----KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 116
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
I+V TPGR++D+ S +V +L + ++DEAD+M F+ + +I+ + P
Sbjct: 117 NETVHILVGTPGRVLDL---ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 173
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQVG 538
Q+++FSATFP ++ + L+KP EI +
Sbjct: 174 THQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 151 bits (382), Expect = 4e-43
Identities = 66/211 (31%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 326 KTWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLL 385
+ + +++L + + +EKP+PIQ ++IP +SGRD++ AK G+GK+ A+++PLL
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTK-SLGLRVVCVYGGTGISEQIS 444
+ + A+++ PTREL +Q+ + + +K G +V+ GGT + + I
Sbjct: 63 ERLDLKKD-----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 445 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNV 504
L +++ TPGR++D+ V + V IVLDEAD++ F + II +
Sbjct: 118 RLDDTVHVVIATPGRILDL---IKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 505 RPDRQTVMFSATFPRQMEALARRILNKPIEI 535
+RQ +++SATFP ++ L KP EI
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 140 bits (352), Expect = 6e-39
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 4/211 (1%)
Query: 327 TWAQCGVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLR 386
+ + I++A+K + KPT IQ + IP + G ++G ++TG+GKT A++LP++
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 387 HILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISEL 446
I E A ++ + K K K + C+ GGT + + +L
Sbjct: 62 KI-KPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120
Query: 447 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRP 506
I++ TPGR+ D + ++ +V+DEAD M DMGF V +I +
Sbjct: 121 NVQPHIVIGTPGRINDFIREQ---ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK 177
Query: 507 DRQTVMFSATFPRQMEALARRILNKPIEIQV 537
D Q ++FSAT P +++ ++ + P + V
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 138 bits (348), Expect = 5e-38
Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 32/211 (15%)
Query: 336 KILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLE 395
K ++ +P IQ I+ A TG GKT + L L
Sbjct: 31 KEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR-- 88
Query: 396 ETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISE------QISELKRG 449
++ PT L +Q + +K+ + G+ + G + R
Sbjct: 89 ------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN 142
Query: 450 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFD-----------MGFEPQVM 498
+I++ T + L +I +D+ D + +GF +
Sbjct: 143 FKIVITTTQFLSKHY-------RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 195
Query: 499 RIIDNVRPDRQTVMFSATFPRQMEALARRIL 529
++ +AT + +A R L
Sbjct: 196 TKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 115 bits (288), Expect = 5e-30
Identities = 33/213 (15%), Positives = 71/213 (33%), Gaps = 22/213 (10%)
Query: 332 GVSKKILDALKKQ-NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILD 390
+ L++ Y++ P Q + I ++SGRD + + TG GK++ + +P L
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 391 QPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGA 450
+ +++SP L + + + +
Sbjct: 66 ---------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQI 116
Query: 451 EIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQ----VMRIIDNVRP 506
++ P R++ N + +DEA + G + + + + P
Sbjct: 117 RLLYIAPERLMLD---NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173
Query: 507 DRQTVMFSATFPRQMEA--LARRILNKPIEIQV 537
+ +AT + LN P+ IQ+
Sbjct: 174 TLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 113 bits (284), Expect = 1e-29
Identities = 40/206 (19%), Positives = 84/206 (40%), Gaps = 19/206 (9%)
Query: 332 GVSKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQ 391
+S + LK++ E+ P QA+A+ + SG++L+ T +GKT+ + ++R +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 392 PPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAE 451
++ + P R L + + KK+ K + + TG E E +
Sbjct: 69 --------GKSLYVVPLRALAGEKYESFKKWEK----IGLRIGISTGDYESRDEHLGDCD 116
Query: 452 IIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQ---VMRIIDNVRPDR 508
IIV T + + R + ++ V+ +V+DE + ++ + +
Sbjct: 117 IIVTTSEKADSL---IRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL 173
Query: 509 QTVMFSATFPRQMEALARRILNKPIE 534
+ + SAT P + +A +
Sbjct: 174 RVIGLSATAPN-VTEIAEWLDADYYV 198
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 97.3 bits (241), Expect = 7e-23
Identities = 25/256 (9%), Positives = 64/256 (25%), Gaps = 41/256 (16%)
Query: 359 AIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKE 418
R I G+GKT ++ ++R + + G +I++PTR + ++ +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR-------GLRTLILAPTRVVAAEMEEA 57
Query: 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT 478
+ + + + L + +
Sbjct: 58 LRGLPIRYQTPAIRAE-----------HTGREIVDLMCHATFTMRLLSP----IRVPNYN 102
Query: 479 YIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILNKPIEIQVG 538
I++DEA + + + +AT P + +
Sbjct: 103 LIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNA--------- 153
Query: 539 GRSVVCKEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCL 598
+ + E + +G + FV + + +
Sbjct: 154 -------PIMDEEREIPERSWNSGHEWVT---DFKGKTVWFVPSIKAGNDIAACLRKNGK 203
Query: 599 EFLPLPAGITRFIWQW 614
+ + L +
Sbjct: 204 KVIQLSRKTFDSEYIK 219
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 82.1 bits (201), Expect = 2e-18
Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 341 LKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGP 400
+ +++ +P Q + + + TG GKT+ ++ + G
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY-------GG 53
Query: 401 MAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRM 460
++++PT+ L +Q + ++ ++V + G E+ R A++IV TP +
Sbjct: 54 KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-AKVIVATPQTI 112
Query: 461 IDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQ 520
+ L A +L V+ IV DEA R + R + + +A+
Sbjct: 113 ENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169
Query: 521 MEALARRILNKPIEIQVGGRSVVCKEVEQHV 551
E + I N IE + RS +V +V
Sbjct: 170 PEKIMEVINNLGIEH-IEYRSENSPDVRPYV 199
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 42.5 bits (99), Expect = 2e-05
Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 30/150 (20%)
Query: 369 IAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGL 428
A TGSGK+ G ++++P+ + G K
Sbjct: 14 HAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG---- 58
Query: 429 RVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRM 488
+ I +P + + I+ DE
Sbjct: 59 ------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECH-S 105
Query: 489 FDMGFEPQVMRIIDNV--RPDRQTVMFSAT 516
D + ++D R V+ +AT
Sbjct: 106 TDATSILGIGTVLDQAETAGARLVVLATAT 135
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 39.7 bits (91), Expect = 2e-04
Identities = 21/159 (13%), Positives = 45/159 (28%), Gaps = 22/159 (13%)
Query: 360 IMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEA 419
+ G + G+GKT F+ +L ++++PTR + ++ +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC-------ARRRLRTLVLAPTRVVLSEMKEAF 56
Query: 420 KKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 479
+ +G L T +
Sbjct: 57 HGLDVKFHTQAFSAHGSGRE---------------VIDAMCHATLTYRMLEPTRVVNWEV 101
Query: 480 IVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 518
I++DEA + + + T++ +AT P
Sbjct: 102 IIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP 140
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 34.2 bits (77), Expect = 0.021
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 547 VEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPAG 606
+EQ + ++E ++ L LL + +VF + + L D + +
Sbjct: 4 IEQSYVEVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 607 ITRFIWQWA 615
+++ +
Sbjct: 62 LSQSQREKV 70
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.9 bits (76), Expect = 0.029
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 547 VEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFV 580
++Q+ + L + +K KL +LL + + V++FV
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEF-NQVVIFV 34
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 34.1 bits (77), Expect = 0.030
Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 39/216 (18%)
Query: 306 KYKEELEGIRVKGKGCPRPIKTWAQCGVS--KKILDALKKQNYE---KPTPIQAQAIPAI 360
K+ R I+ + G+ D + ++ Q +A+
Sbjct: 23 KFDSRSGTYRALAFRYRDIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERW 82
Query: 361 MSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAK 420
+ + + TGSGKT + + +I+ PT L Q +
Sbjct: 83 LVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLG 131
Query: 421 KFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI 480
F + P + +A R +
Sbjct: 132 IFGEEYVGEFSGRI------------------KELKPLTVSTYDSAYVNAEKLGNRFMLL 173
Query: 481 VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 516
+ DE + + +I + + +AT
Sbjct: 174 IFDEVHHLPAESYV----QIAQMSIAPFR-LGLTAT 204
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 31.2 bits (69), Expect = 0.21
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 545 KEVEQHVIVLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLP 604
K + Q+ ++E QK+ L L Q ++I + +
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64
Query: 605 AGITRFIWQW 614
+ +
Sbjct: 65 RMKQQERNKV 74
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 30.3 bits (67), Expect = 0.25
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 12/109 (11%)
Query: 362 SGRDLIGIAKTGSGKTVAFVLPLLRHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKK 421
+ I +A G G T P+L E + E
Sbjct: 7 RAKSFILVA-GGIGIT-----PMLSMARQL--RAEGLRSFRLYYLTRDPEGTAFFDELTS 58
Query: 422 FTKSLGLRVVCVYGGTG----ISEQISELKRGAEIIVCTPGRMIDMLAA 466
+++ +G + K + C P ++D +
Sbjct: 59 DEWRSDVKIHHDHGDPTKAFDFWSVFEKSKPAQHVYCCGPQALMDTVRD 107
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 30.3 bits (67), Expect = 0.44
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 547 VEQHVI-VLDEEQKMLKLLELLGIYQDQGSVIVFVDKQENADSLLFHSMDPCLEFLPLPA 605
++Q + V +EE K L +L ++F + + + L + + +
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISV-TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 606 GITRFIWQW 614
+ +
Sbjct: 60 DLPQQERDT 68
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia
coli [TaxId: 562]}
Length = 231
Score = 30.4 bits (67), Expect = 0.46
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDM 463
A +F K G+ VV + + +++ GA + M
Sbjct: 19 ATQFKKEKGVDVVSSFASSS--TLARQIEAGAPADLFISADQKWM 61
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter
vinelandii [TaxId: 354]}
Length = 231
Score = 30.4 bits (67), Expect = 0.47
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 419 AKKFTKSLGLRVVCVYGGTGISEQISELKRGAEIIVCTPGRMIDM 463
A +F K G VV G +G +++ GA V
Sbjct: 18 AGQFAKQTGHAVVISSGSSG--PVYAQIVNGAPYNVFFSADEKSP 60
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 29.6 bits (66), Expect = 0.96
Identities = 9/104 (8%), Positives = 34/104 (32%)
Query: 18 HKRPKESRRDKDRDRRRRSRSHERRSERDRDRDLERRKEKSRGSKRRSRSREAERSKDHS 77
+ +++D ++ + E + + + + EA +++ +
Sbjct: 174 QQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQA 233
Query: 78 KKEEKDKREKEEEEAAFDPSKLDKEVEATRLELEMQKRRDRIER 121
E+D+ + +++ + + T R ++R
Sbjct: 234 YAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDR 277
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 29.4 bits (65), Expect = 1.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 84 KREKEEEEAAFDPSKLDKEVEATRLELEMQKRRDRIERWRAERK----KKDIETIKKDIK 139
K ++ E R+ L+ +R+ + R E+ + + + KDIK
Sbjct: 151 KVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIK 210
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 27.6 bits (61), Expect = 1.2
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 15 SPSHKRPKESRRDKDRDRRRRSRS------HERRSERDRDRDLERRKEKSRGSKRRSRSR 68
S S +P + ++ +R S E+R + +R E +R R
Sbjct: 3 SGSSGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62
Query: 69 EAERSKDHSKKEEKDKREKEEEEAA 93
++ + +E K + E +
Sbjct: 63 SEKKKAKYKAREAALKAQSERKSGP 87
>d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId:
11292]}
Length = 443
Score = 29.1 bits (65), Expect = 1.6
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
Query: 55 KEKSRGSKRRSRSREAERSKDHSKKEEKDKREKEEEEAAFDPSKLDKEVEATRLELEMQK 114
+ R K AE +K + ++E+ ++ + V + +
Sbjct: 352 RRFFRDEKELQEYEAAELTKTDVALADDGTVNSDDEDYFSGETRSPEAVYTRIMMNGGRL 411
Query: 115 RRDRIERWRAERKKKDI--ETIKKDIKSNLSS 144
+R I R+ + + + + SS
Sbjct: 412 KRSHIRRYVSVSSNHQARPNSFAEFLNKTYSS 443
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.9 bits (62), Expect = 1.8
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 43 SERDRDRDLERRKEKSRGSKRRSRSREAERSK---DHSKKEEKDKREKEEEEAAFDPSKL 99
R RD LE ++K ++ R + +EAE K + + E + ++ EE F
Sbjct: 36 LPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
Query: 100 DKEVEATRLELEMQKRRDRIERWRAERKKKDIETIKK 136
+K + E ++ R + K K E ++K
Sbjct: 96 EKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 132
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 28.4 bits (63), Expect = 2.3
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 237 ELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEI 296
+E+ + E+ + T + + S+++ + VE P+
Sbjct: 176 SFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVT---------VENPKF 226
Query: 297 ARMTPEEVEKYKEELE 312
+T E++ + L
Sbjct: 227 RILTEAEIDAHLVALA 242
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 2.7
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 334 SKKILDALKKQNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTVAFVLPLLRHILDQPP 393
K+ +++ K + +P R L+ TG+GK+V + L L +
Sbjct: 23 GGKLKRMTREKA--KQVTVAGVPMPRDAEPRHLLVNGATGTGKSV-LLRELAYTGLLR-- 77
Query: 394 LEETDGPMAIIMSPTRELCMQIGKEAKKF 422
G +I+ P ++ + G++
Sbjct: 78 -----GDRMVIVDPNGDMLSKFGRDKDII 101
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 27.8 bits (61), Expect = 3.6
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 257 LTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKEEL 311
L + + EL+ + + L + + P ++T +E+ E L
Sbjct: 196 LKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 27.9 bits (61), Expect = 3.7
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 386 RHILDQPPLEETDGPMAIIMSPTRELCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISE 445
++ P+ + + + + I K ++ +V+ YGG+ + +E
Sbjct: 161 GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAE 220
Query: 446 LKRGAEI 452
L +I
Sbjct: 221 LFAQPDI 227
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 27.7 bits (61), Expect = 3.9
Identities = 13/62 (20%), Positives = 23/62 (37%)
Query: 30 RDRRRRSRSHERRSERDRDRDLERRKEKSRGSKRRSRSREAERSKDHSKKEEKDKREKEE 89
D R+ E + R+ S S+ S+E K ++ E ++KE+
Sbjct: 14 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73
Query: 90 EE 91
E
Sbjct: 74 EG 75
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.4 bits (60), Expect = 4.6
Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 25 RRDKDRDRRRRSRSHERRSERDRDRDLERRKEKSRGSKRRSRSREAERSKDHSKKEEKDK 84
+ D+ + + ER + E R +++ +E + + EK +
Sbjct: 194 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 253
Query: 85 REKEEEEAAFDPSKLDKEVEATRLELEMQKRRDRIERWRAERKKKDIETIKKDI 138
++ + ++E E ++ + + K +I+ ++ +
Sbjct: 254 NDRVQLLK-------EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 27.0 bits (59), Expect = 7.7
Identities = 14/118 (11%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 22 KESRRDKDRDRRRRSRSHERRSERDRDRDLERRKEKSRGSKRRSRSREAERSKDHSKKEE 81
+ + +S E ++ D +++ R ++ A+ S + +
Sbjct: 168 PRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ 227
Query: 82 KDKREKEEEEAAFDPSKLDKEVEATRLELEMQKRRDRIERWRAERKKKDIETIKKDIK 139
+ + E++ L + E ++E + + ER A + ++ + +K+ +
Sbjct: 228 RKNEQMMEQKERSYQEHLKQLTE--KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQ 283
>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga
maritima [TaxId: 2336]}
Length = 107
Score = 26.4 bits (58), Expect = 4.9
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG 449
+ IG+ A +++G++V+ GT + E +++ G
Sbjct: 69 IVRGIGRRAIAAFEAMGVKVIKGASGT-VEEVVNQYLSG 106
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 26.0 bits (57), Expect = 5.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 411 LCMQIGKEAKKFTKSLGLRVVCVYGGTGISEQISELKRG 449
+ +G+ A + K+ G++V GGT + E I G
Sbjct: 67 IASNVGRNAFETLKAAGVKVYRFEGGT-VQEAIDAFSEG 104
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 27.2 bits (60), Expect = 5.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 43 SERDRDRDLERRKEKSRGSKRRSRSREAE 71
E +L++RK S+ + R S +A+
Sbjct: 35 DEEFLQNELDKRKGGSKFATPRKESDKAQ 63
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 26.7 bits (59), Expect = 7.5
Identities = 31/171 (18%), Positives = 50/171 (29%), Gaps = 22/171 (12%)
Query: 123 RAERKKKDIETIKKDIKSNLSSGLGGSAPMKKWNLEDDSDEDENDNKDENGKTAEEDIDP 182
+++ KK D++T + + L + K + S + D+ G E I
Sbjct: 11 KSDPKKSDVKTYFTTVAAKLEKTKTDLNSLPKEKSDISSTTGKPDSTGSVGTAVEGAIK- 69
Query: 183 LDAFMQGVHEEMRKVNKPA-------------VPTTADVKPADSGSKPAGV----VIVTG 225
+ + +++ K K A V K AD S IV
Sbjct: 70 ---EVSELLDKLVKAVKTAEGASSGTAAIGEVVADADAAKVADKASVKGIAKGIKEIVEA 126
Query: 226 VVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVD 276
KA EN G + + ASK +S V
Sbjct: 127 AGGSEKLKAVAAAKGENNKGAGKLFGKAGAAAHGDSEA-ASKAAGAVSAVS 176
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 110
Score = 25.5 bits (56), Expect = 8.0
Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 521 MEALARRILNKPIEIQVGG-----RSVVCKEVEQHVIVLDEEQKMLKLLELLGI 569
+ +A L I G + LK L LG+
Sbjct: 15 LRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGL 68
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.5 bits (58), Expect = 9.1
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 225 GVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLP 284
G A G + ++ LE + +E + L K E+ + IE
Sbjct: 150 GTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAV 209
Query: 285 FRKDFYVEVPEIARMTPEEVEKYKEELE 312
R+D + + PEE+EKY E+E
Sbjct: 210 MRRD-----QSLKILNPEEIEKYVAEIE 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,265,002
Number of extensions: 114299
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 70
Length of query: 615
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,158,166
Effective search space: 606878984
Effective search space used: 606878984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)