BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12411
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 7/161 (4%)
Query: 2 KKWNLEDDSDEDENDNKDENGKTAEED-----IDPLDAFMQGVHEEMRKVNKPAVPTTAD 56
KKW+LEDD +E + + E + EE+ +DPLDA+M+ V EE++K N + D
Sbjct: 164 KKWSLEDDDEEQDKAAEAEESERMEEEEVGEEVDPLDAYMEEVKEEVKKFNMGTMKGAND 223
Query: 57 VKPADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASK 116
K S +K VV + + K KGELME +QD +EYSSEEE+ DL + +K
Sbjct: 224 KKGGMSVTKVVTVVKTKKMPHAT--KKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTK 281
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
Q+K L VDH I+Y PFRK+FYVEVPE+ARM+PEEV +Y+
Sbjct: 282 QRKVLEPVDHQKIQYEPFRKNFYVEVPELARMSPEEVSEYR 322
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 2 KKWNLEDDSDEDENDNKD--ENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTA-DVK 58
KKW+LEDD D++++ + E + +E++DPLDA+M+ V EE++K N +V A + K
Sbjct: 196 KKWSLEDDDDDEDDPAEAEKEGNEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEK 255
Query: 59 PADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQK 118
+ V+ T +K KGELME +QD +EYSSEEE+ DL + +KQ+
Sbjct: 256 KSGPTVTKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQR 315
Query: 119 KELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
K L VDH IEY PFRK+FYVEVPE+A+M+ EEV ++
Sbjct: 316 KLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFR 354
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 2 KKWNLEDDSDEDENDNKD--ENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTA-DVK 58
KKW+LEDD D++++ + E + +E++DPLDA+M+ V EE++K N +V A + K
Sbjct: 196 KKWSLEDDDDDEDDPAEAEKEGTEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEK 255
Query: 59 PADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQK 118
+ V+ T +K KGELME +QD +EYSSEEE+ DL + +KQ+
Sbjct: 256 KSGPTVTKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQR 315
Query: 119 KELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
K L VDH IEY PFRK+FYVEVPE+A+M+ EEV ++
Sbjct: 316 KLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFR 354
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 2 KKWNLEDDSDEDENDNKD--ENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTA-DVK 58
KKW+LEDD D++++ + E + E++DPLDA+M+ V EE++K N +V + K
Sbjct: 196 KKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEK 255
Query: 59 PADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQK 118
+ V+ T +K KGELME +QD +EYSSEEE+ DL + +KQ+
Sbjct: 256 KSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQR 315
Query: 119 KELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
K L VDH IEY PFRK+FYVEVPE+A+M+ EEV ++
Sbjct: 316 KLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFR 354
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 2 KKWNLEDDSDEDENDNKD--ENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTA-DVK 58
KKW+LEDD D++++ + E + E++DPLDA+M+ V EE++K N +V + K
Sbjct: 196 KKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEK 255
Query: 59 PADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQK 118
+ V+ T +K KGELME +QD +EYSSEEE+ DL + +KQ+
Sbjct: 256 KSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQR 315
Query: 119 KELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
K L VDH IEY PFRK+FYVEVPE+A+M+ EEV ++
Sbjct: 316 KLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFR 354
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 21 NGKTAEEDIDPLDAFMQG-VHEEMRKVNKPAVPTTAD-------VKPADSGSKPAGVVIV 72
+G EE+IDPLDAFM V E+ K A P + + +SG +P
Sbjct: 372 DGAVDEEEIDPLDAFMNTMVLPEVEKFCNGAPPPAVNDGTLDSKMNGKESGDRP------ 425
Query: 73 TGVVKKSVEKAKGELMEENQDGLEYS--SEEEQEDLTSTAANLASKQKK----ELSKVDH 126
KK KA G +++ +YS ++ L + KK +LS VDH
Sbjct: 426 ----KKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDH 481
Query: 127 STIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
S IEY PFRK+FY+EV +I+RMT EEV Y+
Sbjct: 482 SKIEYEPFRKNFYIEVKDISRMTQEEVNTYR 512
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp.
japonica GN=Os08g0154200 PE=3 SV=2
Length = 947
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 32/188 (17%)
Query: 2 KKWNL------EDDSDEDENDNKDENGKTA----------------EEDIDPLDAFMQG- 38
KKW L E+ ED + +D+ G TA E++IDPLDAFM
Sbjct: 83 KKWTLDGEESDEEGYKEDSQNAEDDGGITADLPSEVNDANVAAPMEEDEIDPLDAFMSSM 142
Query: 39 VHEEMRKVNKPAVPTTADVKPADSGSKPAGVV--IVTGVVKKSVEKAKGELMEENQDGLE 96
V E+ K+ + AV + + ++ G K V+ KK +KA G +M+ + +
Sbjct: 143 VLPEVAKL-ETAVASMESMPASNMGDKNGKSAKDAVSNGDKKGQKKAMGRIMQGDDSDSD 201
Query: 97 YSSEEEQ------EDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTP 150
Y +++ ED + + ++L+ VDHS IEY PFRK+ Y+EV +I MT
Sbjct: 202 YDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIEYQPFRKNLYIEVKDITMMTG 261
Query: 151 EEVEKYKE 158
EEV Y++
Sbjct: 262 EEVATYRK 269
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 23/151 (15%)
Query: 20 ENG--KTAEED-IDPLDAFMQG-VHEEMRKVNKPAVPTTADVK--PADSGSKPAGVVIVT 73
ENG + A+ED IDPLDAFM V E+ K++ + D K ++G +
Sbjct: 239 ENGGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIVIDGILDFKMNGKETGDQ-------- 290
Query: 74 GVVKKSVEKAK-GELMEENQDGLEYS--SEEEQEDLTSTAANLASKQKK----ELSKVDH 126
KK KA G +++ +YS ++ L + KK +LS VDH
Sbjct: 291 --AKKGFNKAALGRIIQGEDSDSDYSEPKSDDDPSLDEDDEEFMKRVKKTKAEKLSLVDH 348
Query: 127 STIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
S IEY PFRK+FY+EV +I+RMT + V Y+
Sbjct: 349 SKIEYEPFRKNFYIEVKDISRMTQDAVNAYR 379
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 33/162 (20%)
Query: 15 NDNKDENGKTA--EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVV-- 70
N + NG A E++IDPLDAFM N +P A ++ S PA V
Sbjct: 262 NGGDNANGANAMDEDEIDPLDAFM----------NSMVLPEVAKLE-----SMPAANVDD 306
Query: 71 --------IVTGVVKKSVEKAKGELME------ENQDGLEYSSEEEQEDLTSTAANLASK 116
VT KK +K G +++ + D + E ED +
Sbjct: 307 KNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKT 366
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKE 158
+ ++L+ VDHS I+Y PFRK+FY+EV +I +M EEV Y++
Sbjct: 367 KAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRK 408
>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=PRP5 PE=3 SV=2
Length = 913
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 101 EEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
++Q+D+ S+ N ++K+L VDH+ I+Y PFRKDFY E EI+++ EEV +
Sbjct: 242 QKQQDILSSKLNRLQNKQKQLDDVDHNQIQYHPFRKDFYTEPTEISKLPEEEVANLR 298
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana
GN=RH24 PE=1 SV=2
Length = 760
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 27/148 (18%)
Query: 27 EDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAKGE 86
++IDPLDAFM+G+H+EM+ P P + D P +S KAK +
Sbjct: 76 DEIDPLDAFMEGIHQEMKSAPPPK-PKEKLERYKDDDDDPV----------ESYLKAKKD 124
Query: 87 L-MEENQDGLEYSSEEEQEDLTSTAA--------------NLASKQKKE-LSKVDHSTIE 130
L + D L ++E + A + K+K E ++ +DHS+I+
Sbjct: 125 LGLTLAADALNAGYNSDEEVYAAAKAVDAGMLDYDSDDNPIVVDKRKIEPITALDHSSID 184
Query: 131 YLPFRKDFYVEVPEIARMTPEEVEKYKE 158
Y P KDFY E+ I+ MT +E Y++
Sbjct: 185 YEPINKDFYEELESISGMTEQETTDYRQ 212
>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides
immitis (strain RS) GN=PRP5 PE=3 SV=1
Length = 1197
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 31/135 (22%)
Query: 26 EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAKG 85
EE+IDPLDAFM G+ + V + +K+V K K
Sbjct: 435 EEEIDPLDAFMSGLKDS--------------------------VTVDASKYRKNVSKPKQ 468
Query: 86 E--LMEENQDGLEYSSEE-EQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEV 142
E + ++D ++ + + E +D + + +++KK+L V+H TI+Y PFRK FY E
Sbjct: 469 EPEAIFGDEDDVDLKAMDFEADDFLAITSK--TRKKKDLPTVNHETIDYEPFRKSFYTEP 526
Query: 143 PEIARMTPEEVEKYK 157
++A + EEV +
Sbjct: 527 VDLAELNDEEVAALR 541
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp.
japonica GN=Os03g0308500 PE=2 SV=1
Length = 770
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 26 EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADS------------GSKPAGVVIVT 73
EE+IDPLDAFM + EE+R ++ ADS K +G+ +
Sbjct: 65 EEEIDPLDAFMAEIQEEIRAPPPAP--KPEALRRADSDDEDDPVESFLRAKKDSGLALAA 122
Query: 74 GVVKK---SVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKE-LSKVDHSTI 129
+ S E+ + +EY S++ + K+K E + +DHSTI
Sbjct: 123 DAMHAGYDSDEEVYAAAKAVDAGMMEYDSDDN--------PIVVDKKKIEPIPPLDHSTI 174
Query: 130 EYLPFRKDFYVEVPEIARMTPEEVEKY 156
EY PF KDFY E P ++ M+ +EV Y
Sbjct: 175 EYEPFNKDFYEEKPSVSGMSEQEVADY 201
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP5 PE=3 SV=1
Length = 1064
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 26 EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAKG 85
+ED+DPLDAFM + + +VP K A G +P
Sbjct: 303 DEDVDPLDAFMADLEQTGSAGGIGSVPARQKQK-AGKGFEP------------------- 342
Query: 86 ELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEI 145
E + D Y EE++ D +S A + K+KK++ +D+S IE RK+F+VE E+
Sbjct: 343 EAYFSDDD---YGYEEDKADPSSILAMASKKKKKDIPTIDYSKIELNQIRKNFWVEPQEL 399
Query: 146 ARMTPEEV 153
++MT +++
Sbjct: 400 SQMTEDDI 407
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 35/161 (21%)
Query: 2 KKWNLEDDSD----EDENDNKDENGKTAEED-IDPLDAFMQGVHEEMRKVNKPAVPTTAD 56
++ NLED + ED +E + EED +DPLDA+M + V TT
Sbjct: 270 RRMNLEDYQELWDQEDRGMLGNEQAASMEEDEVDPLDAYMASL-----------VGTTDT 318
Query: 57 VKPADSGSKPAGVVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASK 116
++P ++ T V+ + N D SE +E+ A
Sbjct: 319 IRPG---------LLNTEVIDPNA----------NDDERMVISETLEEEENLLALAAKRS 359
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
+KK++ VDHS I Y F+KDFYVE E+ ++P EV++ +
Sbjct: 360 KKKDVITVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELR 400
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2
SV=1
Length = 944
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKK---ELSKVDHSTIEYLPFRKDFYVE 141
G + EE +D LEY S+ N + KK L +DHS IEY PF K+FY E
Sbjct: 171 GVVQEEEEDNLEYDSD----------GNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDE 220
Query: 142 VPEIARMTPEEV 153
EI +TP++V
Sbjct: 221 HEEITSLTPQQV 232
>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRP5 PE=3 SV=1
Length = 974
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 36/149 (24%)
Query: 10 SDEDENDNKDENGKTAE-EDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAG 68
S + + ++NG +E ++DPLDA+M + +PTT V ADS
Sbjct: 247 SQSEAKNASEKNGAASEPAEVDPLDAYMSSL----------TLPTTTSVSIADS------ 290
Query: 69 VVIVTGVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHST 128
+E + E D LE S++ DL+ A ++KE++ VDHS
Sbjct: 291 ---------TPLENLN---VWEQVDTLE-KSQDPTLDLS------ALSKRKEIAIVDHSK 331
Query: 129 IEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
Y FR+ FYVE E+A MT E + +
Sbjct: 332 QVYEDFRRQFYVESSELADMTEAETNELR 360
>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase PRP5
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PRP5 PE=3 SV=2
Length = 875
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 100 EEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
+++QE L+S L + +K+L +DHST+ Y FRK+FY E EI T E+VE +
Sbjct: 199 KKQQELLSSKFQKL--QNEKQLETIDHSTMNYSDFRKNFYQEPSEIQNWTAEQVESIR 254
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3
Length = 929
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKK---ELSKVDHSTIEYLPFRKDFYVE 141
G + EE +D LEY S+ N + KK L +DHS I+Y PF K+FY E
Sbjct: 171 GVVQEEEEDNLEYDSD----------GNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNE 220
Query: 142 VPEIARMTPEEV 153
EI +TP+++
Sbjct: 221 HEEITNLTPQQL 232
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum
GN=helB1 PE=2 SV=1
Length = 1151
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
E+ DH++I+Y F+K+FY+EVP +A MT EV ++
Sbjct: 455 EMLHTDHTSIKYAEFQKNFYIEVPVLANMTETEVLDFR 492
>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase PRP5
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PRP5 PE=3 SV=2
Length = 1184
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 36/135 (26%)
Query: 19 DENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKK 78
D+N E+D+DPLDAFM AD+ S+ A
Sbjct: 424 DDNAGAEEDDVDPLDAFM------------------ADLSVPQQPSRAA----------- 454
Query: 79 SVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDF 138
+GE M N D + E EDL + A K+KKE+ ++H +EY PFRKDF
Sbjct: 455 ----PQGETMF-NDDLEPEQTAVEGEDLLALRAA--KKKKKEVPTINHEKVEYEPFRKDF 507
Query: 139 YVEVPEIARMTPEEV 153
Y E EI +M+ E+V
Sbjct: 508 YTEPAEITQMSAEDV 522
>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1
Length = 942
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKK---ELSKVDHSTIEYLPFRKDFYVE 141
G + EE +D LEY S+ N + KK L +DHS I+Y PF K+FY E
Sbjct: 171 GVVQEEEEDNLEYDSD----------GNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNE 220
Query: 142 VPEIARMTPEEV 153
EI +TP+++
Sbjct: 221 HEEITNLTPQQL 232
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1
Length = 938
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKK---ELSKVDHSTIEYLPFRKDFYVE 141
G + EE +D LEY S+ N + KK L +DHS I+Y PF K+FY E
Sbjct: 171 GVVQEEEEDNLEYDSD----------GNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNE 220
Query: 142 VPEIARMTPEEV 153
EI +TP+++
Sbjct: 221 HEEITNLTPQQL 232
>sp|A4RN46|PRP5_MAGO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=PRP5 PE=3 SV=1
Length = 1012
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 14 ENDNKDENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVT 73
+ D+ D + K ++++DPLDAFM + E PA SKP + T
Sbjct: 240 QTDSMDVDTKEDDDEVDPLDAFMADLTEP-------------SFGPA---SKP----VKT 279
Query: 74 GVVKKSVEKAKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLP 133
K + + ++++ G +S +E D + A A ++KKE+ +D+S ++ +P
Sbjct: 280 LSSAKVLPTPEAYFSDDDEFG---ASTKEGVDAKAIMAMAAKRKKKEIPTIDYSKLDIVP 336
Query: 134 FRKDFYVEVPEIARMTPEEVEKYK 157
RK+F+VE E++ MT EV + +
Sbjct: 337 VRKNFWVEPYELSEMTEAEVAELR 360
>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1
Length = 1181
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 24/132 (18%)
Query: 26 EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAKG 85
EE+IDPLDAFM + E P TT G+K K ++ +
Sbjct: 424 EEEIDPLDAFMSELVE-----TAPPKKTT--------GAK---------FSKAKEQQPEA 461
Query: 86 ELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEI 145
+EN + E + +D + A +K+KK++ KVDH+ +EY PFRK FY E ++
Sbjct: 462 IFGDENDPDITAVGEGDADDFLAIANK--AKKKKDIPKVDHAKMEYEPFRKKFYTEPSDL 519
Query: 146 ARMTPEEVEKYK 157
A+M+ E+ +
Sbjct: 520 AQMSEGELASLR 531
>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP5 PE=3
SV=1
Length = 884
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 104 EDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKE-VDN 161
+DL ST + KEL +DHS Y FRK FY E E++ ++ E+VE ++ +DN
Sbjct: 222 QDLISTKLTKLQNKGKELQSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQDLDN 280
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-5 PE=3 SV=1
Length = 1194
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 96 EYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMT 149
+Y E + D TS A + K+KK++ +D+S ++ P RK+F+VE E++ M+
Sbjct: 482 DYGYEADGTDPTSILAMASKKKKKDIPTIDYSKLDLNPIRKNFWVEPYELSHMS 535
>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=prp5 PE=3 SV=1
Length = 1193
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 25 AEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAK 84
AEE++DPLDAFM + E P TT G++ K ++ +
Sbjct: 431 AEEEVDPLDAFMSELAE-----TAPPKKTT--------GAR---------FAKAKEQQPE 468
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPE 144
+E+ L E + +D + A +K+KK++ VDH +EY PFRK FY E
Sbjct: 469 AMFGDEHDVDLTAVGEGDADDFLAIANK--AKKKKDIPAVDHEKMEYEPFRKKFYTEPSN 526
Query: 145 IARMTPEEVEKYK 157
+A MT EE +
Sbjct: 527 LAEMTDEEAASLR 539
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP5 PE=3 SV=2
Length = 1207
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 42/135 (31%)
Query: 26 EEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAKG 85
E+D+DPLDAFM AD+K D V++ + +
Sbjct: 456 EDDVDPLDAFM------------------ADLKQTD--------------VRQPTKTSTT 483
Query: 86 ELMEENQDGLEYSSEEEQE-------DLTSTAANLASKQKKELSKVDHSTIEYLPFRKDF 138
+ ++E + Y S++E + D ++ A A ++KK++ +D+S IE P RK+F
Sbjct: 484 QKIQEPE---AYFSDDEYDFNKKDEGDASALLAITAKRKKKDIPTIDYSKIEIEPIRKNF 540
Query: 139 YVEVPEIARMTPEEV 153
+ E E++ +T EV
Sbjct: 541 WHEPAELSLLTEAEV 555
>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=prp5 PE=3 SV=1
Length = 1211
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 25 AEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVTGVVKKSVEKAK 84
AEE++DPLDAFM + E P TT G++ K ++ +
Sbjct: 449 AEEEVDPLDAFMSELAE-----TAPPKKTT--------GAR---------FTKAKDQQPE 486
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPE 144
+E+ L E + +D + A +K+KK++ VDH +EY PFRK FY E
Sbjct: 487 AMFGDEHDVDLTAVGEGDADDFLAIANK--AKKKKDIPTVDHEKMEYEPFRKKFYTEPSN 544
Query: 145 IARMTPEEVEKYK 157
+A MT EE +
Sbjct: 545 LAEMTDEEAASLR 557
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1
Length = 1151
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 115 SKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEV 153
+++KK++ +++S ++ PFRK+FY E E+A MT E+
Sbjct: 494 ARKKKDIPTINYSALDLPPFRKNFYTEPTELAEMTEAEI 532
>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PRP5 PE=3 SV=1
Length = 1072
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVE 154
+KK+L DHS I+Y PFRK FYV E+ M EE E
Sbjct: 345 RKKDLPPPDHSKIDYEPFRKAFYVPPVEVLEMDEEEAE 382
>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PRP5 PE=3 SV=1
Length = 1072
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVE 154
+KK+L DHS I+Y PFRK FYV E+ M EE E
Sbjct: 345 RKKDLPPPDHSKIDYEPFRKAFYVPPVEVLEMDEEEAE 382
>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=prp5 PE=3 SV=1
Length = 1173
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
++ VDH+ +EY PFR+ FY E ++A+M+ EE +
Sbjct: 486 DIPTVDHNKVEYEPFRRKFYTEPSDLAQMSEEEAANLR 523
>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=prp5 PE=3 SV=1
Length = 1186
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
++ VDH +EY PFRK FY E ++A M+ EE +
Sbjct: 499 DIPTVDHKKVEYEPFRKKFYTEPSDLAAMSEEEAASLR 536
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2
SV=1
Length = 947
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 85 GELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPE 144
G + EE +D LEY S+ + A + L +DH+ IEY PF K+FY E
Sbjct: 167 GLVPEEEEDNLEYDSD------GNPIAPTTKRIIDPLPPIDHTEIEYPPFEKNFYEEHEA 220
Query: 145 IARMTPEEVEKYKE 158
I TP+++ + +
Sbjct: 221 ITSQTPQQITELRH 234
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium
discoideum GN=ddx42 PE=3 SV=1
Length = 986
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 14 ENDNKDENGKTAEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADSGSKPAGVVIVT 73
E+D+K++N + +++IDPLDAFM+ V+ + N ++ + + +
Sbjct: 137 ESDSKNQN-EDEDDEIDPLDAFMENVNAQAAIDNSKSIEKGQQQQQSLKSKRDDIDNEDD 195
Query: 74 GVVKKSVEK---AKGELMEENQDGLEYSSEEEQEDLTSTAANLASKQKK------ELSKV 124
+ + + A ++ D ++YSS ++ + +L + Q K L +
Sbjct: 196 EEIFYKLRQKQLANKSSKQQQDDDVDYSSLDDDDGYFDDEESLKNGQSKGKRIIEPLPPI 255
Query: 125 DHSTIEYLPFRKDFYVEVPEIARMTPEEV 153
DHS EY+ F K FY E P+IA +T E+V
Sbjct: 256 DHSKEEYIEFNKIFYEEHPDIANLTEEQV 284
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp5 PE=3 SV=1
Length = 1192
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
++ V+H +EY PFRK FY E +A+MT EE +
Sbjct: 502 DIPTVNHEKVEYEPFRKKFYTEPSNLAQMTDEEAASLR 539
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=PRP5 PE=3 SV=1
Length = 994
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 119 KELSKVDHSTIEYLPFRKDFYVEVP-EIARMTPEEVEKYK-EVDN 161
KEL ++DH++IEY FRK FY +VP E++ M E++ + E+DN
Sbjct: 331 KELKEIDHTSIEYPKFRKHFY-QVPFEMSTMDNRELDMLRLELDN 374
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 133 PFRKDFYVEVPEIARMTPEEVEKYKEV 159
PF K+FYVE P +A MT EVE+Y+++
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKL 84
>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP2 PE=3 SV=2
Length = 552
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 121 LSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
L VD +++ +PF K+FYVE P ++ + EV++Y+
Sbjct: 77 LGAVDWNSVNLVPFEKNFYVEDPRVSNRSDSEVQQYR 113
>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62
PE=1 SV=3
Length = 719
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 117 QKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKE 158
Q + VD S + PF+K+FY E P +A +P EV++Y+E
Sbjct: 227 QDLPMRPVDFSNLA--PFKKNFYQEHPNVANRSPYEVQRYRE 266
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5
PE=3 SV=1
Length = 1114
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 115 SKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEV 153
+++KK++ ++++ + PFRK+FY E E+ MT E+
Sbjct: 423 ARKKKDIPTINYANLNLPPFRKNFYTEPAELVDMTEAEI 461
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17
PE=1 SV=2
Length = 729
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 134 FRKDFYVEVPEIARMTPEEVEKYK 157
F K+FYVE PE+AR+TP EV++ +
Sbjct: 130 FEKNFYVEHPEVARLTPYEVDELR 153
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17
PE=2 SV=1
Length = 650
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 134 FRKDFYVEVPEIARMTPEEVEKYK 157
F K+FYVE PE+AR+TP EV++ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELR 74
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 134 FRKDFYVEVPEIARMTPEEVEKYK 157
F K+FYVE P +A MT EEVE Y+
Sbjct: 51 FEKNFYVESPSVAGMTEEEVEAYR 74
>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2
Length = 1180
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYK 157
++ VDH +EY FRK FY E ++A+M+ EE +
Sbjct: 492 DIPAVDHKKVEYETFRKKFYTEPSDLAQMSDEEAASLR 529
>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium
discoideum GN=ddx17 PE=3 SV=1
Length = 785
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 134 FRKDFYVEVPEIARMTPEEVEKYK 157
F K+FY+E P++++ T EE+EK++
Sbjct: 344 FEKNFYLEHPDVSKFTQEEIEKFR 367
>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PRP5 PE=3 SV=1
Length = 1156
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 120 ELSKVDHSTIEYLPFRKDFYVEVPEIARMTPE 151
+L VDHS I+Y PF K FY EI M+ E
Sbjct: 421 DLVTVDHSAIDYEPFNKAFYHPPAEIQDMSEE 452
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 115 SKQKKELSKVDHSTIEYLP-FRKDFYVEVPEIARMTPEEVEKYKE 158
S + EL+K D +E LP F K+FYVE ++ +M+ +EVE++++
Sbjct: 55 SDDRLELTKPDWD-VESLPKFEKNFYVEHEDVQKMSTDEVEQFRK 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.124 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,095,576
Number of Sequences: 539616
Number of extensions: 2806475
Number of successful extensions: 18738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 16818
Number of HSP's gapped (non-prelim): 1784
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)