Query psy12411
Match_columns 161
No_of_seqs 182 out of 416
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:35:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tgu_H Mitochondrial ubiquinol 21.1 38 0.0013 23.0 1.4 18 23-40 7-24 (77)
2 2qyx_A Uncharacterized protein 15.7 40 0.0014 27.5 0.5 12 27-38 132-143 (238)
3 3nek_A Nitrogen repressor-like 14.1 46 0.0016 27.1 0.5 11 27-37 132-142 (238)
4 1pp9_H Ubiquinol-cytochrome C 11.9 78 0.0027 21.4 1.1 17 24-40 9-25 (78)
5 3f6g_B Alpha-isopropylmalate s 9.7 1.2E+02 0.004 21.8 1.4 17 28-44 37-53 (127)
6 2lqx_A Trypsin inhibitor BWI-2 12.5 68 0.0023 19.0 0.0 7 1-7 17-23 (41)
7 2ofk_A 3-methyladenine DNA gly 9.1 99 0.0034 24.2 0.9 35 124-158 44-81 (183)
8 2dkz_A Hypothetical protein LO 9.0 1.5E+02 0.0052 20.5 1.7 20 139-158 9-28 (84)
9 1i7h_A Ferredoxin; 2Fe-2S,elec 8.8 1E+02 0.0034 21.1 0.7 15 128-142 97-111 (111)
10 2jg6_A DNA-3-methyladenine gly 7.8 1.2E+02 0.0041 23.8 0.9 28 131-158 53-81 (186)
No 1
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=21.13 E-value=38 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=12.3
Q ss_pred CCCcccCChHHHHHhhhH
Q psy12411 23 KTAEEDIDPLDAFMQGVH 40 (161)
Q Consensus 23 ~~eeeEiDPLDAFM~~v~ 40 (161)
+++++-+|||+++-..=.
T Consensus 7 eeEeE~vDp~~~lre~C~ 24 (77)
T 3tgu_H 7 EEEEELVDPLTTIREHCE 24 (77)
T ss_dssp --CCCCCCHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHh
Confidence 455677899999877643
No 2
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Methanocaldococcus jannaschii DSM2661} PDB: 3nek_A
Probab=15.65 E-value=40 Score=27.48 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=10.2
Q ss_pred ccCChHHHHHhh
Q psy12411 27 EDIDPLDAFMQG 38 (161)
Q Consensus 27 eEiDPLDAFM~~ 38 (161)
--+|||++||+.
T Consensus 132 TSiDPlevfi~~ 143 (238)
T 2qyx_A 132 SSLDPHEVFFNF 143 (238)
T ss_dssp CSSCHHHHSGGG
T ss_pred CccCHHHHhhee
Confidence 358999999995
No 3
>3nek_A Nitrogen repressor-like protein MJ0159; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Methanocaldococcus jannaschii}
Probab=14.13 E-value=46 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=9.6
Q ss_pred ccCChHHHHHh
Q psy12411 27 EDIDPLDAFMQ 37 (161)
Q Consensus 27 eEiDPLDAFM~ 37 (161)
--+|||++||+
T Consensus 132 TSiDPleifi~ 142 (238)
T 3nek_A 132 SSLDPHEVFFN 142 (238)
T ss_dssp CSSCHHHHSGG
T ss_pred CccCHHHHhee
Confidence 36899999997
No 4
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=11.93 E-value=78 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=10.6
Q ss_pred CCcccCChHHHHHhhhH
Q psy12411 24 TAEEDIDPLDAFMQGVH 40 (161)
Q Consensus 24 ~eeeEiDPLDAFM~~v~ 40 (161)
++++-+|||.++-..-.
T Consensus 9 eeEE~vDp~~~l~e~C~ 25 (78)
T 1pp9_H 9 EEEELVDPLTTVREQCE 25 (78)
T ss_dssp ----CCCHHHHHHHHHT
T ss_pred hcccccChHHHHHHHHh
Confidence 45578999999877754
No 5
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=9.66 E-value=1.2e+02 Score=21.83 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.3
Q ss_pred cCChHHHHHhhhHHHhh
Q psy12411 28 DIDPLDAFMQGVHEEMR 44 (161)
Q Consensus 28 EiDPLDAFM~~v~~ev~ 44 (161)
-.-|+|||++.|..-+.
T Consensus 37 GnGPVdA~~~Al~~~~~ 53 (127)
T 3f6g_B 37 GDGGYDAFMNALTKITN 53 (127)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 45799999999876543
No 6
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=12.48 E-value=68 Score=18.96 Aligned_cols=7 Identities=57% Similarity=1.312 Sum_probs=3.6
Q ss_pred CcccccC
Q psy12411 1 MKKWNLE 7 (161)
Q Consensus 1 ~k~w~Le 7 (161)
||.|+-|
T Consensus 17 mkrwste 23 (41)
T 2lqx_A 17 MKRWSTE 23 (41)
Confidence 4555543
No 7
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=9.08 E-value=99 Score=24.15 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=26.6
Q ss_pred CCCCCC--CcCcccccCCC-CChhhhcCCHHHHHHHHh
Q psy12411 124 VDHSTI--EYLPFRKDFYV-EVPEIARMTPEEVEKYKE 158 (161)
Q Consensus 124 vdhs~i--~y~pF~KnFY~-E~~ei~~ms~eEV~~~R~ 158 (161)
+.|..| .-+-||+.|.. .+.-|+.|++++|+.+..
T Consensus 44 LSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~ 81 (183)
T 2ofk_A 44 LSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQ 81 (183)
T ss_dssp SCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTT
T ss_pred CCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhc
Confidence 444443 24578999977 788899999999999865
No 8
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.98 E-value=1.5e+02 Score=20.46 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCCChhhhcCCHHHHHHHHh
Q psy12411 139 YVEVPEIARMTPEEVEKYKE 158 (161)
Q Consensus 139 Y~E~~ei~~ms~eEV~~~R~ 158 (161)
+.+|.+++.||-+||..+.+
T Consensus 9 w~pP~dLs~lSv~EVs~~Lr 28 (84)
T 2dkz_A 9 WQPPADLSGLSIEEVSKSLR 28 (84)
T ss_dssp CCCCSCCSSCCHHHHHHHGG
T ss_pred CCCchhhhhcCHHHHHHHHH
Confidence 56788999999999987653
No 9
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=8.78 E-value=1e+02 Score=21.07 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=12.1
Q ss_pred CCCcCcccccCCCCC
Q psy12411 128 TIEYLPFRKDFYVEV 142 (161)
Q Consensus 128 ~i~y~pF~KnFY~E~ 142 (161)
.|.++++..|||+||
T Consensus 97 ~v~~~~~~~~~~~~~ 111 (111)
T 1i7h_A 97 VVEIPRYTINHAREH 111 (111)
T ss_dssp EEECCSCCCCTTCC-
T ss_pred EEEEChHHhhhhccC
Confidence 467888999999987
No 10
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=7.84 E-value=1.2e+02 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.6
Q ss_pred cCcccccCCC-CChhhhcCCHHHHHHHHh
Q psy12411 131 YLPFRKDFYV-EVPEIARMTPEEVEKYKE 158 (161)
Q Consensus 131 y~pF~KnFY~-E~~ei~~ms~eEV~~~R~ 158 (161)
-+-||+.|.. .+.-|+.|++++|+.+..
T Consensus 53 Re~fR~AF~~FD~~~VA~~~e~dve~Ll~ 81 (186)
T 2jg6_A 53 KEAYEEAFYDFEPEKVAQMTAQDIDRLMT 81 (186)
T ss_dssp HHHHHHHTGGGCHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhc
Confidence 3578999976 788899999999999865
Done!