Query psy12411
Match_columns 161
No_of_seqs 182 out of 416
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 18:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x6va1 b.122.1.3 (A:229-389) 8.7 12 0.00088 26.6 -2.6 9 30-38 48-56 (161)
2 d1nkua_ a.96.1.4 (A:) 3-Methyl 7.7 56 0.0041 23.7 0.8 29 131-159 53-82 (187)
3 d1v47a1 b.122.1.3 (A:4-135) AT 7.4 14 0.001 25.4 -2.6 9 30-38 24-32 (132)
4 d1pyya2 d.11.1.1 (A:693-750) P 7.2 95 0.0069 17.6 1.6 20 140-159 2-21 (58)
5 d1a9xa1 a.92.1.1 (A:403-555) C 6.9 1.2E+02 0.0089 20.7 2.4 19 143-161 101-119 (153)
6 d1jlia_ a.26.1.2 (A:) Interleu 6.5 92 0.0067 20.9 1.4 8 32-39 45-52 (112)
7 d1b0nb_ a.34.1.1 (B:) SinI ant 6.5 1.5E+02 0.011 15.1 2.0 13 146-158 17-29 (31)
8 d1ofcx3 a.187.1.1 (X:697-798) 6.5 77 0.0056 20.8 1.0 23 137-161 33-55 (102)
9 d1g8fa1 b.122.1.3 (A:2-168) AT 6.2 16 0.0012 26.1 -2.9 9 30-38 53-61 (167)
10 d3cx5f1 f.28.1.1 (F:74-147) No 5.8 91 0.0066 19.3 1.0 11 29-39 2-12 (74)
No 1
>d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.70 E-value=12 Score=26.60 Aligned_cols=9 Identities=44% Similarity=0.973 Sum_probs=8.0
Q ss_pred ChHHHHHhh
Q psy12411 30 DPLDAFMQG 38 (161)
Q Consensus 30 DPLDAFM~~ 38 (161)
-||.+||+.
T Consensus 48 sPL~GFM~~ 56 (161)
T d1x6va1 48 TPLNGFMRE 56 (161)
T ss_dssp TTCCSSCCH
T ss_pred ccccccccH
Confidence 499999987
No 2
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=7.72 E-value=56 Score=23.66 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=23.8
Q ss_pred cCcccccCCC-CChhhhcCCHHHHHHHHhh
Q psy12411 131 YLPFRKDFYV-EVPEIARMTPEEVEKYKEV 159 (161)
Q Consensus 131 y~pF~KnFY~-E~~ei~~ms~eEV~~~R~~ 159 (161)
.+-||.-|.. .+..|+.|++++|+.+...
T Consensus 53 r~~fr~aF~~Fd~~~vA~~~e~~ie~Ll~d 82 (187)
T d1nkua_ 53 RENYRACFHQFDPVKVAAMQEEDVERLVQD 82 (187)
T ss_dssp HHHHHHHHTTTCHHHHHTCCHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHcCCHHHHHHHhcc
Confidence 4578888876 7888999999999998653
No 3
>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.43 E-value=14 Score=25.40 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=8.0
Q ss_pred ChHHHHHhh
Q psy12411 30 DPLDAFMQG 38 (161)
Q Consensus 30 DPLDAFM~~ 38 (161)
-||.+||+.
T Consensus 24 sPL~gFM~~ 32 (132)
T d1v47a1 24 FPVKGFMTR 32 (132)
T ss_dssp TTCCSBCCH
T ss_pred CCccccCCH
Confidence 499999987
No 4
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.24 E-value=95 Score=17.60 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.1
Q ss_pred CCChhhhcCCHHHHHHHHhh
Q psy12411 140 VEVPEIARMTPEEVEKYKEV 159 (161)
Q Consensus 140 ~E~~ei~~ms~eEV~~~R~~ 159 (161)
.+.|+|..||..++..+-..
T Consensus 2 ~evPdl~G~s~~~A~~~l~~ 21 (58)
T d1pyya2 2 EEVPDMYGWTKETAETLAKW 21 (58)
T ss_dssp CBCCCCTTCBHHHHHHHHHH
T ss_pred CcCCCcCCCcHHHHHHHHHH
Confidence 46899999999999876554
No 5
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=6.90 E-value=1.2e+02 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.3
Q ss_pred hhhhcCCHHHHHHHHhhcC
Q psy12411 143 PEIARMTPEEVEKYKEVDN 161 (161)
Q Consensus 143 ~ei~~ms~eEV~~~R~~~~ 161 (161)
..+.++++.+|..+|..+|
T Consensus 101 a~l~~~~e~~vr~~R~~~~ 119 (153)
T d1a9xa1 101 AKLAGVREAEIRKLRDQYD 119 (153)
T ss_dssp HHHTTSCHHHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHHcc
Confidence 4457789999999998765
No 6
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.47 E-value=92 Score=20.89 Aligned_cols=8 Identities=50% Similarity=0.683 Sum_probs=6.8
Q ss_pred HHHHHhhh
Q psy12411 32 LDAFMQGV 39 (161)
Q Consensus 32 LDAFM~~v 39 (161)
|+|||..+
T Consensus 45 L~~F~~a~ 52 (112)
T d1jlia_ 45 LLAFVRAV 52 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999963
No 7
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=6.46 E-value=1.5e+02 Score=15.08 Aligned_cols=13 Identities=46% Similarity=0.797 Sum_probs=9.4
Q ss_pred hcCCHHHHHHHHh
Q psy12411 146 ARMTPEEVEKYKE 158 (161)
Q Consensus 146 ~~ms~eEV~~~R~ 158 (161)
++.|++|+..|.+
T Consensus 17 anispeeirkyll 29 (31)
T d1b0nb_ 17 ANISPEEIRKYLL 29 (31)
T ss_dssp TTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHh
Confidence 5678888877754
No 8
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.46 E-value=77 Score=20.85 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=19.2
Q ss_pred cCCCCChhhhcCCHHHHHHHHhhcC
Q psy12411 137 DFYVEVPEIARMTPEEVEKYKEVDN 161 (161)
Q Consensus 137 nFY~E~~ei~~ms~eEV~~~R~~~~ 161 (161)
.|| ++.|..|-+-|+..||+..|
T Consensus 33 QFf--p~rL~eL~ekE~~~~rK~i~ 55 (102)
T d1ofcx3 33 QFF--PPRLFELLDQEIYYFRKTVG 55 (102)
T ss_dssp GCC--CHHHHHHHHHHHHHHHHHTT
T ss_pred ccC--CHHHHHHHHHHHHHHHHHhC
Confidence 488 47999999999999998654
No 9
>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.24 E-value=16 Score=26.08 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=8.0
Q ss_pred ChHHHHHhh
Q psy12411 30 DPLDAFMQG 38 (161)
Q Consensus 30 DPLDAFM~~ 38 (161)
-||.+||+.
T Consensus 53 sPL~GFM~~ 61 (167)
T d1g8fa1 53 SPLTGFLNE 61 (167)
T ss_dssp TTCCEECCH
T ss_pred CCccccccH
Confidence 499999987
No 10
>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.85 E-value=91 Score=19.30 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=8.4
Q ss_pred CChHHHHHhhh
Q psy12411 29 IDPLDAFMQGV 39 (161)
Q Consensus 29 iDPLDAFM~~v 39 (161)
+|||+++-..=
T Consensus 2 VDpl~~lre~C 12 (74)
T d3cx5f1 2 TDQLEDLREHF 12 (74)
T ss_dssp CCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 68999887664
Done!