RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12411
         (161 letters)



>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 244

 Score = 26.9 bits (59), Expect = 1.2
 Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 86  ELMEENQDGLEYSSEEEQEDLTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEI 145
             +E+        + E+  +   T  +       + S+++   +          VE P+ 
Sbjct: 176 SFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVT---------VENPKF 226

Query: 146 ARMTPEEVEKY 156
             +T  E++ +
Sbjct: 227 RILTEAEIDAH 237


>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 250

 Score = 25.1 bits (54), Expect = 4.1
 Identities = 8/53 (15%), Positives = 19/53 (35%)

Query: 106 LTSTAANLASKQKKELSKVDHSTIEYLPFRKDFYVEVPEIARMTPEEVEKYKE 158
           L  +     +    EL+ +     + L +      + P   ++T +E+    E
Sbjct: 196 LKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLE 248


>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
           {Escherichia coli [TaxId: 562]}
          Length = 410

 Score = 25.2 bits (54), Expect = 4.6
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 25  AEEDIDPLDAFMQGVHEEMRKVNKPAVPTTADVKPADS 62
            E   D +DA  + +H+ M    +  VP   +V   ++
Sbjct: 368 FEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGEN 405


>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
           {Thermus aquaticus [TaxId: 271]}
          Length = 409

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 30  DPLDAFMQGVHEEMRKVNKPAVPTTADVKPADS 62
           +  +A  +   E M  V   AVP   +V   + 
Sbjct: 372 ERAEAVARLAKEVMEGVYPLAVPLEVEVGIGED 404


>d1aqea_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
           different strains [TaxId: 876]}
          Length = 110

 Score = 24.1 bits (51), Expect = 7.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 141 EVPEIARMTPEEVEKYKE 158
           E+PE   M+P++ E Y  
Sbjct: 3   EIPESVTMSPKQFEGYTP 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.124    0.332 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,370
Number of extensions: 25018
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 12
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 49 (22.9 bits)