BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12413
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
 pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
          Length = 582

 Score = 27.3 bits (59), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 21/89 (23%)

Query: 92  SDVLNQGFH---MYVDEKDSTVALTPLYLLTGC-------SLPLWLSPGPLDQADMLSLS 141
           S  L  GF    MY D   S  A+ P+   +G         LPLW        A +L+ +
Sbjct: 448 SAYLGMGFRIKRMYDDHVGSLRAMDPV---SGKVVWEHKEHLPLW--------AGVLATA 496

Query: 142 AGILSIGVGDCFASMVGFKYGKHKWKSKT 170
             ++  G GD +      K GK  WK +T
Sbjct: 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQT 525


>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
           From Clostridium Difficile 630 Crystallized With
           Magnesium Formate
 pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
           From Clostridium Difficile 630 Crystallized With
           Magnesium Formate
 pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
           From Clostridium Difficile 630
 pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
           From Clostridium Difficile 630
          Length = 391

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 154 ASMVGFKYGKHKWKSKTIWIILLP 177
            S+V + Y +H WK K+ W+I  P
Sbjct: 74  ESIVNWLYRRHNWKIKSEWLIYSP 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.144    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,051,346
Number of Sequences: 62578
Number of extensions: 174723
Number of successful extensions: 297
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 2
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)