BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12413
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R2Y3|DOLK_MOUSE Dolichol kinase OS=Mus musculus GN=Dolk PE=2 SV=1
Length = 534
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 14/172 (8%)
Query: 9 HSLVLLVIYWVACVLIAIAVIAFQ-------ISSNQKATTSLRKYFHLLAVAVYIPGLVF 61
+ + L+ YW +A V+ +Q S +A T RKYFH + VA YIPG++F
Sbjct: 291 ETRIYLLAYWSLLASVACLVVLYQNAKRSSSESKKHRAPTITRKYFHFIVVATYIPGIIF 350
Query: 62 NRCLLYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYVDEKDS-TVALTPLYLLTG 120
+R LLY+A+ V LA+F+ LE +R + PL L +++DE+DS + LT +YLL G
Sbjct: 351 DRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSLLSLFLDERDSGPLILTHIYLLLG 410
Query: 121 CSLPLWLSPGPLDQADMLSLS------AGILSIGVGDCFASMVGFKYGKHKW 166
SLP+WL P P Q D L + AG+L++GVGD AS+ G G+ +W
Sbjct: 411 MSLPIWLIPRPCTQKDSLEGARALVPYAGVLAVGVGDTVASIFGSTMGEIRW 462
>sp|Q9UPQ8|DOLK_HUMAN Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1
Length = 538
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 14/169 (8%)
Query: 12 VLLVIYWVACVLIAIAVIAFQ-------ISSNQKATTSLRKYFHLLAVAVYIPGLVFNRC 64
+ L+ YW +A V+ +Q S +A T RKYFHL+ VA YIPG++F+R
Sbjct: 298 IYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRP 357
Query: 65 LLYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYVDEKDS-TVALTPLYLLTGCSL 123
LLY+A+ V LA+F+ LE +R + PL L +++DE+DS + LT +YLL G SL
Sbjct: 358 LLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSL 417
Query: 124 PLWLSPGPLDQ------ADMLSLSAGILSIGVGDCFASMVGFKYGKHKW 166
P+WL P P Q A L AG+L++GVGD AS+ G G+ +W
Sbjct: 418 PIWLIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRW 466
>sp|Q58CR4|DOLK_BOVIN Dolichol kinase OS=Bos taurus GN=DOLK PE=2 SV=1
Length = 538
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 14/172 (8%)
Query: 9 HSLVLLVIYWVACVLIAIAVIAFQ-------ISSNQKATTSLRKYFHLLAVAVYIPGLVF 61
+ V L+ YW +A V+ +Q S +A T RKYFH + VA YIPG++
Sbjct: 295 ETRVYLLAYWCLLATVACLVVLYQNAKRSSSESKKHQAPTITRKYFHFIVVATYIPGIIL 354
Query: 62 NRCLLYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYVDEKDS-TVALTPLYLLTG 120
+R LLY+A+ V LA+F+ LE +R + PL L +++DE+DS + LT +YLL G
Sbjct: 355 DRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSLLSLFLDERDSGPLILTHIYLLLG 414
Query: 121 CSLPLWLSPGPLDQ------ADMLSLSAGILSIGVGDCFASMVGFKYGKHKW 166
SLP+WL P P Q A L AG+L++GVGD AS+ G G+ +W
Sbjct: 415 MSLPIWLVPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRW 466
>sp|Q9Y7T6|SEC59_SCHPO Dolichol kinase sec59 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec59 PE=3 SV=3
Length = 504
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 44 RKYFHLLAVAVYIPGLVFNRCLLYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYV 103
RK +H L V +++P + L+L+ VL +FL +E +RIL L P ++++ Y
Sbjct: 308 RKTYHALVVFLFLPVCCLDPHFLHLSFSGVLFIFLFVEGIRILRLKPFGKMIHEFLWEYT 367
Query: 104 DEKDST--VALTPLYLLTGCSLPLWLS---PGPLDQADMLSLSAGILSIGVGDCFASMVG 158
D +D + ++ +YLL GC++P+WLS GP+ ++L G+L +G GD AS++G
Sbjct: 368 DNRDHKGPLIISHIYLLIGCAIPIWLSNALKGPVASVELL---VGVLCLGCGDSMASIIG 424
Query: 159 FKYGKHK 165
++GKH+
Sbjct: 425 KRFGKHR 431
>sp|P20048|SEC59_YEAST Dolichol kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEC59 PE=1 SV=1
Length = 519
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 18 WVACVLIAIAVIAFQISSNQKATTSLRKYFHLLAVAVYIPGLVFNRCLLYLASGVVLALF 77
W + ++++I I + S T+ RK +H + + IP + + +A + +F
Sbjct: 305 WSSILILSIPSILIEKDSLSLNTS--RKLWHFIIFLLIIPSFQMDSNFVKIALSGTIPVF 362
Query: 78 LVLEIMRILCLPPLSDVLNQGFHMYVDEKDST--VALTPLYLLTGCSLPLWLSPGPLDQA 135
L +E +R LPPL + + D++D + + ++ LYLL G S PL ++ P+
Sbjct: 363 LSIEYIRFQNLPPLGSAIELQLRRFADDRDHSGPLIISYLYLLFGISTPLLMNNSPM--- 419
Query: 136 DMLSLSAGILSIGVGDCFASMVGFKYGKHKWK 167
G++ +G+GD AS++G +YG+ +WK
Sbjct: 420 -------GLIGLGIGDSLASIIGKRYGRIRWK 444
>sp|Q28722|NPT1_RABIT Sodium-dependent phosphate transport protein 1 OS=Oryctolagus
cuniculus GN=SLC17A1 PE=2 SV=1
Length = 465
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 18 WVACVLIAIAVIAFQISSNQKATTSLRKYFHLLAVAVYIPGLVFNRCLLYLASG 71
W+ C +IA F +S N + T++RK F A+ + +P +VF+ CLLYL+SG
Sbjct: 310 WI-CGVIAGHTADFLMSRNMLSLTAIRKLFT--AIGLLLP-IVFSMCLLYLSSG 359
>sp|Q5AL45|EFGM_CANAL Elongation factor G, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=MEF1 PE=3 SV=1
Length = 761
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 88 LPPLSDVLNQGFHMYVDEKDSTVALTPLYLLTGCSLPLWLSPGPLDQADMLSLSAGILSI 147
LP ++VLN G + D+ + V LTP L L GP Q + + G L
Sbjct: 343 LPQPNEVLNTGLELQKDDSEKPVHLTPSTSEPFVGLAFKLEEGPYGQLTYIRVYQGKLKK 402
Query: 148 GVGDCFASMVGFKYGK 163
G A M K GK
Sbjct: 403 G-----AYMTHVKTGK 413
>sp|O82379|FBLK4_ARATH F-box/LRR-repeat/kelch-repeat protein At2g29770 OS=Arabidopsis
thaliana GN=At2g29770 PE=2 SV=1
Length = 387
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 80 LEIMRILCLPPL---SDVLNQGFHMYV-------DEKDSTVALTPLYLLTGCSLP 124
L + I LPPL S V+ G+HMYV + S V++ L T CSLP
Sbjct: 113 LHLREIKSLPPLNHGSAVVTIGYHMYVIGGHNRLHQPTSNVSIIDLRFHTSCSLP 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,266,038
Number of Sequences: 539616
Number of extensions: 2522822
Number of successful extensions: 6914
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6898
Number of HSP's gapped (non-prelim): 24
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)