Query psy12413
Match_columns 192
No_of_seqs 109 out of 376
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4axg_C Protein CUP; 4E-BP, mRN 18.5 19 0.00065 26.8 -0.6 16 176-191 61-76 (130)
2 2eay_A Biotin [acetyl-COA-carb 9.7 1.5E+02 0.005 23.7 2.2 26 142-168 70-95 (233)
3 2dxu_A Biotin--[acetyl-COA-car 7.7 2E+02 0.0067 23.0 2.2 26 141-168 78-103 (235)
4 2nr1_A NR1 M2, M2; receptor, s 6.9 2.9E+02 0.01 15.1 1.9 18 44-61 4-21 (27)
5 3hfe_A Potassium voltage-gated 6.8 40 0.0014 19.2 -1.7 13 180-192 4-16 (31)
6 3rkx_A Biotin-[acetyl-COA-carb 6.4 2.1E+02 0.0072 24.0 1.8 26 142-168 154-179 (323)
7 2cb2_A Sulfur oxygenase reduct 6.1 3.4E+02 0.011 23.2 2.8 26 146-173 134-161 (318)
8 3arc_L Photosystem II reaction 6.0 5E+02 0.017 15.1 3.7 26 35-60 5-30 (37)
9 2ej9_A Putative biotin ligase; 5.3 2E+02 0.0067 23.0 0.9 26 142-168 69-94 (237)
10 2vv5_A MSCS, small-conductance 5.0 1E+03 0.035 19.1 5.3 77 66-150 31-108 (286)
No 1
>4axg_C Protein CUP; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=18.51 E-value=19 Score=26.77 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=8.8
Q ss_pred cccccccccccccccC
Q psy12413 176 LPKCGDLDIEARFNTM 191 (192)
Q Consensus 176 ~~~~~~~~~~~~~~~~ 191 (192)
...|+|+.+|||...|
T Consensus 61 IATCDDIELE~RLRRM 76 (130)
T 4axg_C 61 IATCDDIELEGRLRRM 76 (130)
T ss_dssp ------CTHHHHHHHT
T ss_pred cccccchhHHHHHHhh
Confidence 4589999999998766
No 2
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=9.69 E-value=1.5e+02 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHhhhhhhhhhHhhhhcccCccccCC
Q psy12413 142 AGILSIGVGDCFASMVGFKYGKHKWKS 168 (192)
Q Consensus 142 ~GIl~lgvGDs~AalVG~~fGk~r~~g 168 (192)
.=+..+++.|++.++.|.. =+.||||
T Consensus 70 sl~~~lAv~~al~~~~~~~-~~iKWPN 95 (233)
T 2eay_A 70 PLVLGLSVSEALEEITEIP-FSLKWPN 95 (233)
T ss_dssp HHHHHHHHHHHHHHHHCCC-CEEETTT
T ss_pred HHHHHHHHHHHHHHhcCCC-ccEeCcc
Confidence 3445677889988887764 3689995
No 3
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=7.66 E-value=2e+02 Score=23.00 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=18.6
Q ss_pred HHHHhhhhhhhhhHhhhhcccCccccCC
Q psy12413 141 SAGILSIGVGDCFASMVGFKYGKHKWKS 168 (192)
Q Consensus 141 ~~GIl~lgvGDs~AalVG~~fGk~r~~g 168 (192)
+.=+..+++.|++.++ |.. =+.||||
T Consensus 78 l~l~~alAv~~al~~~-~~~-~~iKWPN 103 (235)
T 2dxu_A 78 IVFLGAVGVVETLKEF-SID-GRIKWPN 103 (235)
T ss_dssp HHHHHHHHHHHHHHHT-TCC-CEEETTT
T ss_pred HHHHHHHHHHHHHHHh-CCC-eeeeCCC
Confidence 3445577788998888 654 3689995
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.94 E-value=2.9e+02 Score=15.09 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy12413 44 RKYFHLLAVAVYIPGLVF 61 (192)
Q Consensus 44 RK~fHll~~lif~p~~~~ 61 (192)
||-+|+.+.+.|.=+..+
T Consensus 4 ~~~~~l~aa~wF~WGvll 21 (27)
T 2nr1_A 4 GDALTLSSAMWFSWGVLL 21 (27)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred ccceehhhhHHHhhHhhe
Confidence 788899888777654433
No 5
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=6.79 E-value=40 Score=19.22 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=8.7
Q ss_pred cccccccccccCC
Q psy12413 180 GDLDIEARFNTME 192 (192)
Q Consensus 180 ~~~~~~~~~~~~~ 192 (192)
|.-+|-||.|.||
T Consensus 4 g~nTIGaRLnRvE 16 (31)
T 3hfe_A 4 GSNTIGARLNRVE 16 (31)
T ss_dssp -CCSHHHHHHHHH
T ss_pred CcchHHHHHHHHH
Confidence 4567778888775
No 6
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=6.35 E-value=2.1e+02 Score=23.98 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHhhhhhhhhhHhhhhcccCccccCC
Q psy12413 142 AGILSIGVGDCFASMVGFKYGKHKWKS 168 (192)
Q Consensus 142 ~GIl~lgvGDs~AalVG~~fGk~r~~g 168 (192)
.=++.+++.|++..+.|... +.||||
T Consensus 154 sl~~avAv~~al~~~~~~~~-~iKWPN 179 (323)
T 3rkx_A 154 NLFIALGIRDAIQHFSQDEV-KVKWPN 179 (323)
T ss_dssp HHHHHHHHHHHHHTTCSSCE-EEETTT
T ss_pred HHHHHHHHHHHHHHhcCCce-EEeCCC
Confidence 44456778888887766543 589995
No 7
>2cb2_A Sulfur oxygenase reductase; oxidoreductase, mononuclear non-heme iron, biogeochemical sulfur cycle, extremophIle, thermophilic, acidophilic; 1.7A {Acidianus ambivalens} SCOP: d.58.4.17 PDB: 2yav_A 2yaw_A 2yax_A* 2yax_B* 3bxv_A
Probab=6.06 E-value=3.4e+02 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=19.2
Q ss_pred hhhhhhhhHhhhhcc--cCccccCCCceEE
Q psy12413 146 SIGVGDCFASMVGFK--YGKHKWKSKTIWI 173 (192)
Q Consensus 146 ~lgvGDs~AalVG~~--fGk~r~~g~~Ks~ 173 (192)
..-+||++|+ |+. .-+...|.+++.+
T Consensus 134 ~~~lG~~fa~--g~~~~~p~va~py~qR~v 161 (318)
T 2cb2_A 134 TAVVGKKFAE--GKPLDIPVISQPYGKRVV 161 (318)
T ss_dssp HHHHHHHHHT--TCGGGCCCCCCCSSSSEE
T ss_pred HHHHHHHHhc--CCCCCCCcccccccceEE
Confidence 4568999999 887 5556677777765
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.96 E-value=5e+02 Score=15.13 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=13.4
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhhh
Q psy12413 35 SNQKATTSLRKYFHLLAVAVYIPGLV 60 (192)
Q Consensus 35 ~~~~~~~~~RK~fHll~~lif~p~~~ 60 (192)
.|+++.++-|-..-...+++|+.++.
T Consensus 5 pn~q~VELNRTSLy~GLLlifvlavl 30 (37)
T 3arc_L 5 PNRQPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp TTCCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceechhhHHHHHHHHHHHHHH
Confidence 44454455566555555555554433
No 9
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=5.28 E-value=2e+02 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=18.3
Q ss_pred HHHhhhhhhhhhHhhhhcccCccccCC
Q psy12413 142 AGILSIGVGDCFASMVGFKYGKHKWKS 168 (192)
Q Consensus 142 ~GIl~lgvGDs~AalVG~~fGk~r~~g 168 (192)
.=+..+++.|++.++.|... +.||||
T Consensus 69 ~l~~~lAv~~al~~~~~~~~-~iKWPN 94 (237)
T 2ej9_A 69 NLLVPICIIEVLKNYVDKEL-GLKFPN 94 (237)
T ss_dssp HHHHHHHHHHHHTTTCCSCE-EEETTT
T ss_pred HHHHHHHHHHHHHHhhCCCc-ceeCCC
Confidence 33456778888888766543 689995
No 10
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=5.04 E-value=1e+03 Score=19.07 Aligned_cols=77 Identities=8% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhchhccccCCC-ccchhHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q psy12413 66 LYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYVDEKDS-TVALTPLYLLTGCSLPLWLSPGPLDQADMLSLSAGI 144 (192)
Q Consensus 66 l~l~l~~~l~ifl~lE~lR~~~~~~~~~~l~~~~~~f~derd~-~l~lt~iyLllG~~ipl~l~~~~~~~~~~~~~~~GI 144 (192)
+..++.+.++.+++...++. .+++.+.+...++.. .+.-.-+..++-+..-+.......-+...+.+.+|+
T Consensus 31 i~~~~~i~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~ 102 (286)
T 2vv5_A 31 IVAALAIIIVGLIIARMISN--------AVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 102 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred hhhhhh
Q psy12413 145 LSIGVG 150 (192)
Q Consensus 145 l~lgvG 150 (192)
+.+++|
T Consensus 103 ~g~aig 108 (286)
T 2vv5_A 103 AGLVVG 108 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!