Query psy12413
Match_columns 192
No_of_seqs 109 out of 376
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 18:37:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12413.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12413hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p3ra1 c.55.1.4 (A:2-253) Gly 16.1 12 0.00089 28.1 -0.5 19 141-159 233-252 (252)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 10.7 1.7E+02 0.013 17.5 5.3 15 136-150 68-82 (86)
3 d1r59o1 c.55.1.4 (O:5-256) Gly 9.4 22 0.0016 26.4 -1.0 18 142-159 232-250 (252)
4 d1ihna_ c.103.1.1 (A:) Hypothe 6.6 56 0.0041 21.7 0.3 21 158-178 6-28 (113)
5 d2diga1 b.34.9.1 (A:8-62) Lami 6.4 67 0.0049 19.0 0.5 8 163-170 13-20 (55)
6 d1biaa3 d.104.1.2 (A:64-270) B 5.7 1.6E+02 0.012 20.9 2.6 27 141-168 86-112 (207)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 5.1 2.6E+02 0.019 20.4 3.6 6 109-114 62-67 (447)
8 d1msza_ d.68.7.1 (A:) SmuBP-2 5.0 1.5E+02 0.011 17.4 1.6 13 40-52 27-39 (62)
9 d1q90a3 f.23.23.1 (A:248-292) 4.9 3.1E+02 0.022 15.3 4.1 22 8-29 1-23 (45)
10 d1vf5c3 f.23.23.1 (C:250-286) 4.7 2.9E+02 0.021 14.8 3.7 18 8-25 2-19 (37)
No 1
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=16.08 E-value=12 Score=28.06 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=14.2
Q ss_pred HHHH-hhhhhhhhhHhhhhc
Q psy12413 141 SAGI-LSIGVGDCFASMVGF 159 (192)
Q Consensus 141 ~~GI-l~lgvGDs~AalVG~ 159 (192)
..|+ ++.|.||+.||++|+
T Consensus 233 ~~gipV~~g~gD~~aa~~G~ 252 (252)
T d2p3ra1 233 GTRIPISGIAGDQQAALFGQ 252 (252)
T ss_dssp SCCEEEEEEEEHHHHHHHHT
T ss_pred CCCCcEEEEchHHHHHHhCC
Confidence 3455 355689999999995
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=10.71 E-value=1.7e+02 Score=17.53 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=10.1
Q ss_pred hHHHHHHHHhhhhhh
Q psy12413 136 DMLSLSAGILSIGVG 150 (192)
Q Consensus 136 ~~~~~~~GIl~lgvG 150 (192)
..+.+..|+..+++|
T Consensus 68 t~l~a~~G~~gvaiG 82 (86)
T d2vv5a3 68 ASVIAVLGAAGLVVG 82 (86)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667787777766
No 3
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=9.40 E-value=22 Score=26.45 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHH-hhhhhhhhhHhhhhc
Q psy12413 142 AGI-LSIGVGDCFASMVGF 159 (192)
Q Consensus 142 ~GI-l~lgvGDs~AalVG~ 159 (192)
.|+ ++.|.||+.||.+|.
T Consensus 232 ~g~pV~~g~gD~~aa~iG~ 250 (252)
T d1r59o1 232 SEVPIAGMAGDQQAALFGQ 250 (252)
T ss_dssp --SCEEEECCTTTSHHHHT
T ss_pred CCCeEEEEhHHHHHHHHhC
Confidence 454 455679999999994
No 4
>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.60 E-value=56 Score=21.73 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=16.8
Q ss_pred hcccCccccCCCc--eEEEeccc
Q psy12413 158 GFKYGKHKWKSKT--IWIILLPK 178 (192)
Q Consensus 158 G~~fGk~r~~g~~--Ks~~~~~~ 178 (192)
|.|||+-+..|.+ .++++.|-
T Consensus 6 ~~~~G~~~I~G~~Y~~sViv~p~ 28 (113)
T d1ihna_ 6 DCRFGSVTYRGREYRSDIVVHVD 28 (113)
T ss_dssp EEETTEEEETTEEECSCEEECTT
T ss_pred ceeccEEEECCEEeecCEEEcCC
Confidence 6789999998764 68888885
No 5
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.40 E-value=67 Score=18.96 Aligned_cols=8 Identities=13% Similarity=0.817 Sum_probs=6.4
Q ss_pred ccccCCCc
Q psy12413 163 KHKWKSKT 170 (192)
Q Consensus 163 k~r~~g~~ 170 (192)
..|||||+
T Consensus 13 m~RwPgSs 20 (55)
T d2diga1 13 RGRWPGSS 20 (55)
T ss_dssp EEECTTTC
T ss_pred EeecCCCc
Confidence 46899987
No 6
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}
Probab=5.71 E-value=1.6e+02 Score=20.87 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHhhhhhhhhhHhhhhcccCccccCC
Q psy12413 141 SAGILSIGVGDCFASMVGFKYGKHKWKS 168 (192)
Q Consensus 141 ~~GIl~lgvGDs~AalVG~~fGk~r~~g 168 (192)
+.-+..+++.|++..+.|... +-||||
T Consensus 86 l~~~~~lav~~~l~~~~~~~~-~iKWPN 112 (207)
T d1biaa3 86 LSLVIGIVMAEVLRKLGADKV-RVKWPN 112 (207)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC-EEETTT
T ss_pred hhhHHHHHHHHHHhhccccee-eeeech
Confidence 344556777888887766543 579995
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.11 E-value=2.6e+02 Score=20.40 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.6
Q ss_pred ccchhH
Q psy12413 109 TVALTP 114 (192)
Q Consensus 109 ~l~lt~ 114 (192)
++..+-
T Consensus 62 g~~~s~ 67 (447)
T d1pw4a_ 62 GFALSG 67 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 8
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.00 E-value=1.5e+02 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHH
Q psy12413 40 TTSLRKYFHLLAV 52 (192)
Q Consensus 40 ~~~~RK~fHll~~ 52 (192)
+...||++|-++-
T Consensus 27 ~~~~R~~vH~lA~ 39 (62)
T d1msza_ 27 NSHDRLRVHQIAE 39 (62)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4578999998764
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.90 E-value=3.1e+02 Score=15.27 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHHH-HHHH
Q psy12413 8 LHSLVLLVIYWVACVLIA-IAVI 29 (192)
Q Consensus 8 ~~~r~~li~~W~~~~~~~-i~~v 29 (192)
|+.|+.-+......+.++ +..|
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LV 23 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLV 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666665555 4444
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.72 E-value=2.9e+02 Score=14.76 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy12413 8 LHSLVLLVIYWVACVLIA 25 (192)
Q Consensus 8 ~~~r~~li~~W~~~~~~~ 25 (192)
|+.|+.-+......+.++
T Consensus 2 ~p~Rv~gl~~F~~~v~la 19 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLA 19 (37)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 677877666666666555
Done!