RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12413
         (192 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.021
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 18/98 (18%)

Query: 30  AFQISSNQKATTSLRKYFHLLAV---AVYIPGLVFNRCLLYLASGVVLALFLVLEIMRIL 86
             + S N       RK F  L+V   + +IP ++    L++             ++M ++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKS-------DVMVVV 408

Query: 87  CLPPLSDVLNQGFHMYVDEKDSTVALTPLYLLTGCSLP 124
                  ++ +        K+ST+++  +YL     L 
Sbjct: 409 NKLHKYSLVEK------QPKESTISIPSIYLELKVKLE 440



 Score = 32.5 bits (73), Expect = 0.092
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 38/176 (21%)

Query: 16  IYWVA---C-----VLIAIAVIAFQISSNQKA----TTSLRKYFHLLAVAV--YIPGLVF 61
           I+W+    C     VL  +  + +QI  N  +    +++++   H +   +   +    +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 62  NRCLLYL---ASGVVLALFL----VLEIMRILCLPPLSDVLNQGFHMYVDEKDSTVALTP 114
             CLL L    +      F     +L   R   +   +D L+     ++     ++ LTP
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTP 300

Query: 115 LYLLTGCSLPLWLSPGPL-DQADMLSLSAGILSIGVGDCFASMVG--FKYGKHKWK 167
             + +     L   P  L  +    +       +       S++    + G   W 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNP----RRL-------SIIAESIRDGLATWD 345


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.6 bits (73), Expect = 0.034
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 11/40 (27%)

Query: 105 EKDSTVALTPLYLLTGCSLPLWLSPGPLDQADMLSLSAGI 144
           EK +   L         SL L+ +    D A  L++ A +
Sbjct: 18  EKQALKKLQA-------SLKLY-AD---DSAPALAIKATM 46



 Score = 26.8 bits (58), Expect = 3.0
 Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 9/28 (32%)

Query: 37 QKATTSLRKYFHLLA--VAVYIPGLVFN 62
          +K   SL+ Y    A   A   P L   
Sbjct: 23 KKLQASLKLY----ADDSA---PALAIK 43


>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum;
           ribonucleoprotein, nucleotide-binding, PR biosynthesis,
           translation, zinc-finger, 70S ribosome, ribos
           translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
          Length = 98

 Score = 25.6 bits (56), Expect = 6.1
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 55  YIPGLVFNRCLLYLASGVVLALFLVLEIMRILCLPPLSDVLNQGFHMYVDEKDSTVALTP 114
            + G++F   LL + + V+++ ++VL  M      PLS ++  G   Y    D   ++  
Sbjct: 3   RLAGILF---LLTVLTTVLVSGWVVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILA 59

Query: 115 LYLLTG 120
           L     
Sbjct: 60  LGEPGT 65


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.144    0.450 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,903,597
Number of extensions: 158083
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)