RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12418
(2324 letters)
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A
{Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 499 bits (1286), Expect = e-157
Identities = 237/575 (41%), Positives = 320/575 (55%), Gaps = 57/575 (9%)
Query: 1515 VRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV 1574
V + P PP + +++ L W PP +GGS +TNY +EK++ W+ +
Sbjct: 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR 63
Query: 1575 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTE 1634
T + + L G YEFR++AEN++G SKP P+ +G D E
Sbjct: 64 YT-YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGD-----ERKRRRGYDVDE 117
Query: 1635 DSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILE 1694
K G+ Y D+ + P V DHYDI E
Sbjct: 118 QG------KIVRGKGTVSSNY--------DNYVFDIWKQYYPQPVEIKHDHVLDHYDIHE 163
Query: 1695 EIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF 1754
E+GTGAFGVVHR ER TGN FAAKF+ H +KE +RKEI M+ L HP L+NLHDAF
Sbjct: 164 ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 223
Query: 1755 EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKP 1814
EDD+EMV+I+EF+SGGELFE++ KMSE E + YMRQVC+ + HMHE N +HLD+KP
Sbjct: 224 EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKP 283
Query: 1815 ENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVGFYTDMWAVG 1874
ENIM T+ S +K+IDFGL LDP + VK++TGTAEFAAPE+ E +PVG+YTDMW+VG
Sbjct: 284 ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVG 343
Query: 1875 VLAYVL---------DVAEDTNWRVAN-DYLVKDPTY---------IVHSLLQGHDYEFR 1915
VL+Y+L + ++T V + D+ + D + + LL D R
Sbjct: 344 VLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLL-ADPNTR 402
Query: 1916 VKAKNAAGFSKPSSTSKERPKFPLHSWLTGDHRNRTNS-INQKNLIKMRDRIRSKYEGWD 1974
+ A H WLT + +S I K+RD I++KY+ W
Sbjct: 403 MTIHQALE----------------HPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWP 446
Query: 1975 ECVLPLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRV 2034
E + PLGR+S YSSLRK + +SI+D +DR +A PRF++KP EGQS F CRV
Sbjct: 447 EPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRV 506
Query: 2035 IAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
IA + P +TW +++ELKQSVK+MKRY G+DY
Sbjct: 507 IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Score = 130 bits (328), Expect = 4e-31
Identities = 64/115 (55%), Positives = 84/115 (73%)
Query: 2069 YSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWF 2128
YSSLRK + +SI+D +DR +A PRF++KP EGQS F CRVIA + P +TW
Sbjct: 458 YSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWH 517
Query: 2129 HNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
+++ELKQSVK+MKRY G+DY INR K +D+GEY +RA+N YG +EE+VFLNV
Sbjct: 518 KDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 113 bits (284), Expect = 1e-25
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
+P PP+ P+ + +I E+ LSWKPP DGGS +TNY +EK E+ G WS + R
Sbjct: 6 DVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK-SR 63
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
+ GL +QY FR+ AEN++G S+P E +
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVD 116
Score = 108 bits (272), Expect = 4e-24
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTTNL 1282
P+ P P + +V L+W PPA GG +T Y +EKRE G W +
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK--SRYT 65
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPD---PPEAPKVDRITK 1339
T+ LR G +YEFR+IA N+ G KP +PT V +RK + K
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGK 125
Query: 1340 DSVTLSWRPPKHDGGARIKGYIVQKRKK 1367
+V+ ++ D + V+ +
Sbjct: 126 GTVSSNYDNYVFDIWKQYYPQPVEIKHD 153
Score = 106 bits (266), Expect = 2e-23
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPV 1383
+P+PP P ++ I ++V LSW+PP DGG+ + Y ++KR+ G W
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK--SRYTY 66
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
T+ L G++Y FR+IA N+ G S+P + + PV++ K
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKR 109
Score = 95.3 bits (237), Expect = 7e-20
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
EP+ P P +++ ++ V L+WKPP DGGS +T+Y I+K+E W + T
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYT 67
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQ 684
++ L G++YEFR+IA N+ G S+P + + ++
Sbjct: 68 TIE--GLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104
Score = 93.0 bits (231), Expect = 4e-19
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLF 545
+P PP P + N+ E+ LSW+ P DGG+ + +Y IEK + G+WS + +
Sbjct: 8 PEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTY 66
Query: 546 YDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPT 595
+ L K+Y FR+ A N G+S E T + + +
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVD 116
Score = 90.7 bits (225), Expect = 2e-18
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 231
P+ P P + + + V L W PP DGGS ++ Y IEK+ G + + T
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAKSRYTY 66
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
T++ L+ G++YEFR+IA NK G +P + +APV
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104
Score = 87.6 bits (217), Expect = 2e-17
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P PP P NI + L W+ P DGG+ + +Y +EK + G W P TYT
Sbjct: 10 PEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTT 68
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 181
E L G Y FR+ A NK G+S P +P+ + R
Sbjct: 69 IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVD 116
Score = 69.1 bits (169), Expect = 1e-11
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W +++E+K S + + + L I + +D G YT A N G L V
Sbjct: 513 VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 69.1 bits (169), Expect = 1e-11
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 859
+P+PP P ++ I ++V LSW+PP DGG+ + Y ++KR+ G
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS 55
Score = 63.7 bits (155), Expect = 5e-10
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKP 488
Y IE E +W + T++GL GK+Y FRI EN +G S+P +P P
Sbjct: 44 YTIEKREAMGGSWSPC-AKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Query: 489 SPPEGPLEVSNVTKES 504
E E
Sbjct: 103 PGDERKRRRGYDVDEQ 118
Score = 54.8 bits (132), Expect = 3e-07
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 1398 RVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPA 1457
R+ + P + S ++ + V G+ + + +A P
Sbjct: 454 RISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV 513
Query: 1458 AFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHV 1515
W +D + S + K+ N L + + D G+Y ++ KN G L+V
Sbjct: 514 VTWHKDDRELKQSV-KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 52.9 bits (127), Expect = 9e-07
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 268 KPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 327
P+ + G+ N + I PP VTW D +ELK SV+ G
Sbjct: 477 DRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK-QSVKYMKRYNG 535
Query: 328 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ K D G Y + +N+ G E + V
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 51.0 bits (122), Expect = 4e-06
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 1/104 (0%)
Query: 669 GPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKE 728
+ + P+ + G+ N + I PP VTW D +E
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
Query: 729 LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
LK SV+ G + K D G Y + +N+ G E
Sbjct: 523 LK-QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 50.2 bits (120), Expect = 6e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
P+PP P I + L W P DGGS + Y +E R
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKR 49
Score = 39.4 bits (92), Expect = 0.016
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 2265 VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
V+W+KD + Y G Y + I DD G+Y+
Sbjct: 514 VTWHKDDRELKQSV-KYMKRYNGNDYGLTINRVKGDDKGEYT 554
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica}
SCOP: d.144.1.7
Length = 387
Score = 370 bits (953), Expect = e-115
Identities = 191/401 (47%), Positives = 246/401 (61%), Gaps = 46/401 (11%)
Query: 1642 SKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAF 1701
H G +Y K D + ++P SVYD+YDILEE+G+GAF
Sbjct: 5 HHHHHHGSKVRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAF 64
Query: 1702 GVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMV 1761
GVVHRC E+ TG +F AKFI + L+K ++ EI IMNQLHHPKLINLHDAFED EMV
Sbjct: 65 GVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMV 124
Query: 1762 LIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQT 1821
LI EFLSGGELF+RI A DYKMSEAEVINYMRQ CE +KHMHE +I+HLD+KPENIMC+T
Sbjct: 125 LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCET 184
Query: 1822 RNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAY--- 1878
+ +++VK+IDFGLATKL+P+E+VK++T TAEFAAPEIV+REPVGFYTDMWA+GVL Y
Sbjct: 185 KKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLL 244
Query: 1879 -----------------VLDVA---EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKA 1918
V ++ + + KD + +LLQ + R+
Sbjct: 245 SGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSP-EAKD---FIKNLLQ-KEPRKRLTV 299
Query: 1919 KNAAGFSKPSSTSKERPKFPL-HSWLTGDHRNRTNSINQKNLIKMRDRIRSKYEGWDECV 1977
+A L H WL GDH N T+ I K+R +I+ KY W
Sbjct: 300 HDA-----------------LEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQ 342
Query: 1978 LPLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQ 2018
+GR++ +SSLRK + + I D+ FDR++A PRF ++P
Sbjct: 343 PAIGRIANFSSLRKHRPQEYQIYDSYFDRKEAVPRFKLRPS 383
Score = 40.5 bits (95), Expect = 0.006
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 2069 YSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQ 2101
+SSLRK + + I D+ FDR++A PRF ++P
Sbjct: 351 FSSLRKHRPQEYQIYDSYFDRKEAVPRFKLRPS 383
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 325 bits (836), Expect = e-100
Identities = 82/195 (42%), Positives = 134/195 (68%), Gaps = 1/195 (0%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
+Y+ Y I E++G G FG+VHRC E + + AKF+ V ++ L++KEI I+N H
Sbjct: 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHR 61
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+++LH++FE +E+V+IFEF+SG ++FERI ++++E E+++Y+ QVCEA++ +H
Sbjct: 62 NILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH 121
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVG 1865
NI H D++PENI+ QTR S+ +K+I+FG A +L P + ++ E+ APE+ + + V
Sbjct: 122 NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVS 181
Query: 1866 FYTDMWAVGVLAYVL 1880
TDMW++G L YVL
Sbjct: 182 TATDMWSLGTLVYVL 196
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 321 bits (825), Expect = 2e-98
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 5/272 (1%)
Query: 1611 PIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKA 1670
+ ++ + + S + VWS P++ ++ D
Sbjct: 13 DLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSK--RTSALAVDIPAPP 70
Query: 1671 SMAHIPDTSLKYTSSVYDHYDI--LEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE 1728
+ + K +V Y + E +G G FG VH+C E TG AAK I +
Sbjct: 71 APFDHRIVTAK-QGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD 129
Query: 1729 KELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEV 1788
KE ++ EI +MNQL H LI L+DAFE +++VL+ E++ GGELF+RI Y ++E +
Sbjct: 130 KEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDT 189
Query: 1789 INYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST 1848
I +M+Q+CE ++HMH+ I+HLD+KPENI+C R++ +K+IDFGLA + P E +K++
Sbjct: 190 ILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNF 249
Query: 1849 GTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
GT EF APE+V + V F TDMW+VGV+AY+L
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYML 281
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural
genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB:
3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A
1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A*
1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Length = 283
Score = 306 bits (786), Expect = 2e-94
Identities = 85/205 (41%), Positives = 131/205 (63%), Gaps = 9/205 (4%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRKEID 1737
S V DHY++ EE+G+G F +V +CR++ TG +AAKFI + +E I +E++
Sbjct: 1 SMVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVN 60
Query: 1738 IMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
I+ ++ HP +I LHD FE+ ++VLI E +SGGELF+ + ++E E +++Q+ +
Sbjct: 61 ILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAE-KESLTEDEATQFLKQILD 119
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRN--STNVKMIDFGLATKLDPNEVVKISTGTAEFAA 1855
V ++H K I H D+KPENIM +N + +K+IDFG+A K++ K GT EF A
Sbjct: 120 GVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVA 179
Query: 1856 PEIVEREPVGFYTDMWAVGVLAYVL 1880
PEIV EP+G DMW++GV+ Y+L
Sbjct: 180 PEIVNYEPLGLEADMWSIGVITYIL 204
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A
{Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A
2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 307 bits (788), Expect = 3e-94
Identities = 85/206 (41%), Positives = 128/206 (62%), Gaps = 9/206 (4%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS------HNLEKELIRKEI 1736
V D YDI EE+G+G F +V +CRE+ TG +AAKFI + +E I +E+
Sbjct: 7 QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV 66
Query: 1737 DIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVC 1796
I+ Q+ H +I LHD +E+ ++VLI E +SGGELF+ + + +SE E ++++Q+
Sbjct: 67 SILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKES-LSEEEATSFIKQIL 125
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTR--NSTNVKMIDFGLATKLDPNEVVKISTGTAEFA 1854
+ V ++H K I H D+KPENIM + ++K+IDFGLA +++ K GT EF
Sbjct: 126 DGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFV 185
Query: 1855 APEIVEREPVGFYTDMWAVGVLAYVL 1880
APEIV EP+G DMW++GV+ Y+L
Sbjct: 186 APEIVNYEPLGLEADMWSIGVITYIL 211
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP;
1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 306 bits (787), Expect = 1e-93
Identities = 86/206 (41%), Positives = 129/206 (62%), Gaps = 9/206 (4%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS------HNLEKELIRKEI 1736
V D YDI EE+G+G F +V +CRE+ TG +AAKFI + +E I +E+
Sbjct: 7 QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV 66
Query: 1737 DIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVC 1796
I+ Q+ HP +I LHD +E+ ++VLI E +SGGELF+ + + +SE E ++++Q+
Sbjct: 67 SILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKES-LSEEEATSFIKQIL 125
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTR--NSTNVKMIDFGLATKLDPNEVVKISTGTAEFA 1854
+ V ++H K I H D+KPENIM + ++K+IDFGLA +++ K GT EF
Sbjct: 126 DGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFV 185
Query: 1855 APEIVEREPVGFYTDMWAVGVLAYVL 1880
APEIV EP+G DMW++GV+ Y+L
Sbjct: 186 APEIVNYEPLGLEADMWSIGVITYIL 211
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 304 bits (781), Expect = 3e-93
Identities = 85/211 (40%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 1678 TSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS------HNLEKEL 1731
T + +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E
Sbjct: 2 TVFR-QENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRED 60
Query: 1732 IRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINY 1791
I +E+ I+ ++ HP +I LH+ +E+ +++LI E ++GGELF+ + ++E E +
Sbjct: 61 IEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEF 119
Query: 1792 MRQVCEAVKHMHEKNIIHLDVKPENIMCQTRN--STNVKMIDFGLATKLDPNEVVKISTG 1849
++Q+ V ++H I H D+KPENIM RN +K+IDFGLA K+D K G
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFG 179
Query: 1850 TAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
T EF APEIV EP+G DMW++GV+ Y+L
Sbjct: 180 TPEFVAPEIVNYEPLGLEADMWSIGVITYIL 210
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase
17B, DRAK2, DAP kinase relat apoptosis-inducing protein
kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Length = 327
Score = 298 bits (765), Expect = 5e-91
Identities = 69/207 (33%), Positives = 123/207 (59%), Gaps = 6/207 (2%)
Query: 1680 LKYTSSVYDHYDIL-EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEI 1736
+ + + Y + +E+G G F VV +C + TG +AAKF+ + I EI
Sbjct: 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEI 79
Query: 1737 DIMNQL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQ 1794
++ P++INLH+ +E+ E++LI E+ +GGE+F + +SE +VI ++Q
Sbjct: 80 AVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQ 139
Query: 1795 VCEAVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEF 1853
+ E V ++H+ NI+HLD+KP+NI+ + ++K++DFG++ K+ ++ GT E+
Sbjct: 140 ILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEY 199
Query: 1854 AAPEIVEREPVGFYTDMWAVGVLAYVL 1880
APEI+ +P+ TDMW +G++AY+L
Sbjct: 200 LAPEILNYDPITTATDMWNIGIIAYML 226
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 243 bits (623), Expect = 1e-71
Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 10/208 (4%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS-----HNLEKELIRKEID 1737
D Y++ E IG G F VV RC R+TG FA K + V+ L E +++E
Sbjct: 19 DVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREAS 78
Query: 1738 IMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITA---PDYKMSEAEVINYMRQ 1794
I + L HP ++ L + + D + ++FEF+ G +L I + SEA +YMRQ
Sbjct: 79 ICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQ 138
Query: 1795 VCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKL-DPNEVVKISTGTAE 1852
+ EA+++ H+ NIIH DVKP ++ ++ NS VK+ FG+A +L + V GT
Sbjct: 139 ILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPH 198
Query: 1853 FAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
F APE+V+REP G D+W GV+ ++L
Sbjct: 199 FMAPEVVKREPYGKPVDVWGCGVILFIL 226
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 233 bits (597), Expect = 4e-69
Identities = 70/201 (34%), Positives = 123/201 (61%), Gaps = 4/201 (1%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMN 1740
++ D+YD+ EE+G GAF VV RC + TG FAAK I + + + +E I
Sbjct: 1 STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+L HP ++ LHD+ +++ L+F+ ++GGELFE I A ++ SEA+ + ++Q+ E++
Sbjct: 61 KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREF-YSEADASHCIQQILESIA 119
Query: 1801 HMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIV 1859
+ H I+H ++KPEN++ ++ VK+ DFGLA +++ +E GT + +PE++
Sbjct: 120 YCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVL 179
Query: 1860 EREPVGFYTDMWAVGVLAYVL 1880
+++P D+WA GV+ Y+L
Sbjct: 180 KKDPYSKPVDIWACGVILYIL 200
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 233 bits (596), Expect = 5e-69
Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 6/210 (2%)
Query: 1676 PDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRK 1734
+L + ++ D + ++G+GAFG VH ER +G K I + E I
Sbjct: 10 GRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEA 69
Query: 1735 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKM---SEAEVINY 1791
EI+++ L HP +I + + FED M ++ E GGEL ERI + + SE V
Sbjct: 70 EIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAEL 129
Query: 1792 MRQVCEAVKHMHEKNIIHLDVKPENIMCQTRN-STNVKMIDFGLATKLDPNEVVKISTGT 1850
M+Q+ A+ + H ++++H D+KPENI+ Q + + +K+IDFGLA +E + GT
Sbjct: 130 MKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGT 189
Query: 1851 AEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
A + APE+ +R+ V F D+W+ GV+ Y L
Sbjct: 190 ALYMAPEVFKRD-VTFKCDIWSAGVVMYFL 218
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 235 bits (601), Expect = 1e-68
Identities = 71/213 (33%), Positives = 126/213 (59%), Gaps = 4/213 (1%)
Query: 1671 SMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLE 1728
M + + ++ D+YD+ EE+G GAF VV RC + TG FAAK I +
Sbjct: 12 QMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD 71
Query: 1729 KELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEV 1788
+ + +E I +L HP ++ LHD+ +++ L+F+ ++GGELFE I A ++ SEA+
Sbjct: 72 FQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREF-YSEADA 130
Query: 1789 INYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLDPNEVVKIS 1847
+ ++Q+ E++ + H I+H ++KPEN++ ++ VK+ DFGLA +++ +E
Sbjct: 131 SHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGF 190
Query: 1848 TGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
GT + +PE+++++P D+WA GV+ Y+L
Sbjct: 191 AGTPGYLSPEVLKKDPYSKPVDIWACGVILYIL 223
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 223 bits (570), Expect = 7e-67
Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 6/199 (3%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
D P P +V + +SV+L W+PP GG I Y VEKRE + +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
+ V L+EG Y FRV+A NE G G P++ + V+ E +P PP + +T++SV+
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE---RPLPPGKITLMDVTRNSVS 120
Query: 1344 LSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
LSW P+HDGG+RI GYIV+ + KG D W +V V T+ L +GEEY+FRV A
Sbjct: 121 LSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTE--ATITGLIQGEEYSFRVSAQ 178
Query: 1403 NEAGNSEPGKQSGPVIVEE 1421
NE G S+P + S PVI ++
Sbjct: 179 NEKGISDPRQLSVPVIAKD 197
Score = 201 bits (514), Expect = 4e-59
Identities = 71/200 (35%), Positives = 101/200 (50%), Gaps = 7/200 (3%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS- 543
D P PP+ +V VTK S L+W P+ DGG+ I +YI+EK + +R +S
Sbjct: 3 MDTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF 603
+ V +L Y FRV A N G ET ++ A + P P K T+ D +
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKA---SERPLPPGKITLMDVTRNS 118
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVI 663
V L+W+ P +DGGS I YI++ + KG+ W V T+ I L +G+EY FRV
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKV--TEATITGLIQGEEYSFRVS 176
Query: 664 AVNEAGPSEPSDASDIIMCK 683
A NE G S+P S ++ K
Sbjct: 177 AQNEKGISDPRQLSVPVIAK 196
Score = 192 bits (490), Expect = 5e-56
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 8/198 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTY 131
P PP+ K +TK+S L W P DGG+ I +Y+VEK + + + + T
Sbjct: 5 TPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD 191
+ + L EG Y FRV A N+ G LP + RP PG+ T+ D ++ V
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPA---ETAESVKASERPLPPGKITLMDVTRNSVS 120
Query: 192 LEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAV 250
L W P+ DGGS I YI+E + K W +T ++ L +GEEY FRV A
Sbjct: 121 LSWEKPEHDGGSRILGYIVEMQTKGSDKWAT--CATVKVTEATITGLIQGEEYSFRVSAQ 178
Query: 251 NKGGPGEPSKASAPVTCK 268
N+ G +P + S PV K
Sbjct: 179 NEKGISDPRQLSVPVIAK 196
Score = 173 bits (440), Expect = 3e-49
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTT 1576
+D P PP++L E S+TL W PP +GGS+I NY+VEK++ ++ V++
Sbjct: 2 AMDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDS 1636
+V L G +Y FRV+AEN+YG+ PA T + +K + P PG +D T +S
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK---ASERPLPPGKITLMDVTRNS 118
Query: 1637 ISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
+SL W KP HDGGS I YIVE + DKW A + T T
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATC--ATVKVTEATIT 163
Score = 164 bits (418), Expect = 3e-46
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
D P PPQ V ++T S +L+W PPL DGGS I NY+VEK ES +S +++
Sbjct: 4 DTPGPPQDLK-VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNA 1159
++ V L+ Y FRV AEN+YG+ P E + + P PPG+ ++D N+
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAE---TAESVKASERPLPPGKITLMDVTRNSV 119
Query: 1160 TLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+L W++P DGGS+I GY VE ++ +
Sbjct: 120 SLSWEKPEHDGGSRILGYIVEMQTKGSDK 148
Score = 154 bits (391), Expect = 1e-42
Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 31/203 (15%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR--------------STRT 1186
P PP ++ + + TL WD P DGGSKI+ Y VE R +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 1187 ATDCGL----GYQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSP 1239
L Y + G G + + + P P + + +
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGI---GLPAETAESV----KASERPLPPGKITLMDVTR 116
Query: 1240 SSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTTNLNFTVHDLREGGKYEFR 1298
+SVSL+W P + GG I GY VE + +G +W T T+ L +G +Y FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVT--EATITGLIQGEEYSFR 174
Query: 1299 VIAINEAGPGKPSKPTDIVQCKE 1321
V A NE G P + + V K+
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAKD 197
Score = 154 bits (390), Expect = 1e-42
Identities = 68/325 (20%), Positives = 101/325 (31%), Gaps = 133/325 (40%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
P PP+ KV +TK SVTL+W PP DGG++IK YIV+KR+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
+ L G
Sbjct: 65 KV--------------------------------DQLQEG-------------------- 72
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQI 992
+Y FRV AEN G+ P
Sbjct: 73 -----CSYYFRVLAENEYGIGLP------------------------------------- 90
Query: 993 VDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVS 1052
+ + + P P + + + +SV
Sbjct: 91 --AETAESVKASERPLPPGKITLMDVTRNSV----------------------------- 119
Query: 1053 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQY 1112
SLSW+ P DGGS I Y+VE + W+ ++ V+ + GL +Y
Sbjct: 120 -------SLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT-VKVTEATITGLIQGEEY 171
Query: 1113 RFRVRAENQYGVSEPLELDNSITAK 1137
FRV A+N+ G+S+P +L + AK
Sbjct: 172 SFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 136 bits (345), Expect = 2e-36
Identities = 54/170 (31%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGA 476
I YI+E E + TV C K + V L EG Y FR+ EN YG
Sbjct: 33 GGSKI-----KNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGI 87
Query: 477 SEPLDPLFP----DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISR 532
P + ++P PP G + + +VT+ S LSW P DGG+ IL YI+E
Sbjct: 88 GLPAETAESVKASERPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGS 146
Query: 533 GTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
W+ + LI +EY FRV A N G SD + + +A+
Sbjct: 147 DKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 122 bits (308), Expect = 2e-31
Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 1384
P PP+ KV +TK SVTL+W PP DGG++IK YIV+KR+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
V L EG Y FRV+A NE G P + + V E+P P IT+
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPP-------GKITLMDVTRN 117
Query: 1445 SIHV 1448
S+ +
Sbjct: 118 SVSL 121
Score = 116 bits (293), Expect = 1e-29
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
D P P+ VK+ + V L W PPL DGGS I +YI++K+E + + +KT
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYST-VATNCHKT 62
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
K+ L +G Y FRV+A NE G P++ ++ + +R
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102
Score = 109 bits (275), Expect = 4e-27
Identities = 35/102 (34%), Positives = 47/102 (46%)
Query: 173 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 232
P P V + K V L W PP DGGS I YI+EK+ + T+
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
V L+EG Y FRV+A N+ G G P++ + V R + P
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPP 106
Score = 100 bits (252), Expect = 6e-24
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
+RP PP + + +S++L W P +GGS I Y+VE + S W ++ T
Sbjct: 101 ERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEA 160
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 1615
+ L G Y FRV A+N+ G+S P P+ AK
Sbjct: 161 T-ITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 95.1 bits (237), Expect = 5e-22
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P PP G + ++T++S +L W P DGG+ IL Y+VE + +W V T
Sbjct: 103 PLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEAT 161
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 169
LI+G +Y+FRV A N+ G S P P+ AKD
Sbjct: 162 ITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197
Score = 53.1 bits (128), Expect = 1e-07
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 1868 TDMWAVGVLAYVLDVAED--TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFS 1925
+L Y++++ W VK + L+QG +Y FRV A+N G S
Sbjct: 127 EHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGLIQGEEYSFRVSAQNEKGIS 184
Query: 1926 KPSSTS 1931
P S
Sbjct: 185 DPRQLS 190
Score = 48.9 bits (117), Expect = 3e-06
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1875 VLAYVLDVAEDT--NWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+ Y+++ E T + ++ V L +G Y FRV A+N G P+ T++
Sbjct: 37 IKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAE 95
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 237 bits (606), Expect = 8e-67
Identities = 86/471 (18%), Positives = 140/471 (29%), Gaps = 27/471 (5%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
PP+ P + W+ T + ++ ++ T +
Sbjct: 101 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTS 158
Query: 1284 FTV-HDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI--TKD 1340
TV + E V A N G S + K KP+PP V
Sbjct: 159 CTVDYSTVYFVNIEVWVEAENALGKV-TSDHINFD--PVYKVKPNPPHNLSVINSEELSS 215
Query: 1341 SVTLSWRPPKHDGGARIKGYIVQKRKKGGDW---VDANSVPVPNPVHTVGNLSEGEEYTF 1397
+ L+W P I Y +Q R K + TV +L EY F
Sbjct: 216 ILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 274
Query: 1398 RVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGED-FSIHVPFMAFPQP 1456
R+ + E G S ++P S I + ++ + + P
Sbjct: 275 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPF 334
Query: 1457 AAFWFANDSIIDDSDTRVHKQ-LTMNSASLVVKNSQRSDGGQYRLQLKNPAGF-DTATLH 1514
A D + + + H Q T+N+ L V +D L ++N G D A L
Sbjct: 335 EANGKILDYEVTLTRWKSHLQNYTVNATKLTVNL--TNDRYLATLTVRNLVGKSDAAVLT 392
Query: 1515 VRVLDR-PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 1573
+ D P + L + WT PR++ I + V +
Sbjct: 393 IPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDG 452
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDST 1633
NLA Y V G P + IKA P +
Sbjct: 453 TVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQAPPSKGPTVRTKKVG 508
Query: 1634 EDSISLVWSK-PRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
++ L W + P I+ Y + R I ++ ++ + +YT
Sbjct: 509 KNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----NVDSSHTEYT 555
Score = 214 bits (547), Expect = 5e-59
Identities = 61/390 (15%), Positives = 119/390 (30%), Gaps = 25/390 (6%)
Query: 1040 DKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
KP+PP + S+ L+W P I Y ++ WS++ +
Sbjct: 197 VKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTA 255
Query: 1099 PA---YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP-----GQPQ 1150
+ V L+ +Y FR+R + G + + P
Sbjct: 256 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDP 315
Query: 1151 IVDWDTNNATLMWD-RPRTDGGSKIQGYKVEFRSTRT-ATDCGLGYQQCHADVGQTPHGW 1208
L+W P + KI Y+V ++ + + + ++ +
Sbjct: 316 SHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLA 375
Query: 1209 WLQDSRIQG-------RIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYY 1261
L + G I + P + + + W P + I +
Sbjct: 376 TLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWC 435
Query: 1262 VEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKE 1321
V + T + + +L E Y V + GPG P ++
Sbjct: 436 VLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE----SIKAYL 491
Query: 1322 QKRKPDPPEAPKVDRITKDSVTLSWR-PPKHDGGARIKGYIVQKRKKGGDWVDANSVPVP 1380
++ P + ++ K+ L W P I+ Y + R G+ N V
Sbjct: 492 KQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVN-VDSS 550
Query: 1381 NPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ +T+ +L+ Y R+ A + G +
Sbjct: 551 HTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 580
Score = 199 bits (508), Expect = 5e-54
Identities = 93/740 (12%), Positives = 170/740 (22%), Gaps = 198/740 (26%)
Query: 411 VLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGK-------- 462
C + + I WKT PKE +T+ T
Sbjct: 22 TAVCVLKEKCMDYFHVNANYIV--------WKTNHFTIPKEQYTIINRTASSVTFTDIAS 73
Query: 463 ---KYVFRIRTENMYGASEPLDPLF-PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGA 518
+ I T + + P P+ L + + W +
Sbjct: 74 LNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL- 131
Query: 519 PILHYIIEKMDISRGTWS--DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETT 576
++ ++ + T + ++ V+A N++G+ +
Sbjct: 132 -ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV---TSD 187
Query: 577 KTTVARNEFDEPDAPEKPTVKD--WGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW 634
+P+ P +V + + L W P + I Y IQ + K W
Sbjct: 188 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTW 246
Query: 635 M--NALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIK 692
+ + ++ + DL EY FR+ + E G SD S+ P
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA 306
Query: 693 TP--LKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV 750
K V++ + PP E I E+ ++ + + + TV
Sbjct: 307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV 366
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVK 810
N +D L +RN G+ + + +P
Sbjct: 367 NL-TNDRYLATLTVRNLVGKSDAAVLTIP-----------------------------AC 396
Query: 811 SRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 870
+ P + + + W P+ YI+
Sbjct: 397 DFQATHPVMDLKAFPKDNMLWVEWTTPRESVK----KYIL-------------------- 432
Query: 871 VHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHAT 930
+ + W V
Sbjct: 433 ------------------------------EWCVLSDKAPCITDWQQEDGTVHR---TYL 459
Query: 931 VPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLP 990
L E Y V G P
Sbjct: 460 RGNLAESKCYLITVTPVYADGPGSP----------------------------------- 484
Query: 991 QIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLD 1050
+ + A PP + L W+
Sbjct: 485 -----ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQ--------------------- 518
Query: 1051 VSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNR 1110
P+D I NY + Y + G + ++ Y + L ++
Sbjct: 519 --------------LPVDVQNGFIRNYTIF-YRTIIGNETAVNVDSSHTEYTLSSLTSDT 563
Query: 1111 QYRFRVRAENQYGVSEPLEL 1130
Y R+ A G + E
Sbjct: 564 LYMVRMAAYTDEGGKDGPEF 583
Score = 186 bits (474), Expect = 1e-49
Identities = 100/587 (17%), Positives = 170/587 (28%), Gaps = 56/587 (9%)
Query: 9 NVMWKLADIAQGAIGKTGLFCVSQGEAMSYQTGIVRVNCVDCLDRTNTAQFAVGKCALAL 68
++WK I K +++ + T I +N + Q + +
Sbjct: 41 YIVWKTNH---FTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITI 97
Query: 69 QWLHIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV--EKMDMETGRWVPMGD 126
P P+ L EW R+ ++ + E + D
Sbjct: 98 ISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRD 154
Query: 127 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD-- 184
+ T + + + V+A N +G+ K P+ P +V +
Sbjct: 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---PNPPHNLSVINSE 211
Query: 185 WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITATS--VPDLKEGE 241
+ L WT P I +Y I+ + K W + T +S V DLK
Sbjct: 212 ELSSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 270
Query: 242 EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTP--LKDIIIKAGKILNVEIQFIG 299
EY FR+ + + G G S S + P K V++ +
Sbjct: 271 EYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKT 330
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 359
PP E I E+ ++ + + + TVN +D L +RN G+ + +
Sbjct: 331 LPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNL-TNDRYLATLTVRNLVGKSDAA 389
Query: 360 FTVTVLETISK----TNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCR 415
+ NM+++ W P +
Sbjct: 390 VLTIPACDFQATHPVMDLKAFPKDNMLWVE----------------WT-----TPRESVK 428
Query: 416 GNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYG 475
L + + + + L E K Y+ + G
Sbjct: 429 KYIL--------EWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADG 480
Query: 476 ASEPLDPLFPDKPSPPEGP--LEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISR 532
P K +PP + V K L W +PVD I +Y I I
Sbjct: 481 PGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 533 GTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ + Y + L Y+ R+ A G D E T TT
Sbjct: 541 NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 587
Score = 176 bits (447), Expect = 3e-46
Identities = 66/407 (16%), Positives = 108/407 (26%), Gaps = 55/407 (13%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
P P+ L + W + TN+ + K E AT ++ +
Sbjct: 99 SGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNFTL-KSEWATHKFADCKAKRD 154
Query: 1098 SPA--YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
+P + V AEN G D+ P+PP +++ +
Sbjct: 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTS---DHINFDPVYKVKPNPPHNLSVINSE 211
Query: 1156 TNNA--TLMWDRPRTDGGSKIQGYKVEFR-----------------STRTATDCGL---- 1192
++ L W P + I Y +++R + + T L
Sbjct: 212 ELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 270
Query: 1193 GYQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQ-----PEVTGYSPSSVSL 1244
Y +C + G G+W S + D P +V L
Sbjct: 271 EYVFRIRCMKEDG---KGYWSDWSEEA-SGITYEDRPSKAPSFWYKIDPSHTQGYRTVQL 326
Query: 1245 AWNP-PANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAIN 1303
W P I Y V NY TV +Y + N
Sbjct: 327 VWKTLPPFEANGKILDYEVTLTRWKSHL---QNYTVNATKLTV--NLTNDRYLATLTVRN 381
Query: 1304 EAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ 1363
G + T + P + + + W P+ I + V
Sbjct: 382 LVGKSDAAVLTIPACDFQ----ATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVL 437
Query: 1364 KRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
K + + GNL+E + Y V V G P
Sbjct: 438 SDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP 484
Score = 171 bits (435), Expect = 1e-44
Identities = 79/541 (14%), Positives = 147/541 (27%), Gaps = 75/541 (13%)
Query: 1107 ETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIV---DWDTNNATLMW 1163
N Q + Q PP +P+ + + W
Sbjct: 73 SLNIQLTCNILTFGQLE---------QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 123
Query: 1164 DRPRTDGGSKIQGYKVEFR-STRTATDCGL---GYQQCHADVGQTPHGW---WLQDSRIQ 1216
D R + + + ++ +T DC C D W++
Sbjct: 124 DGGR-ETHLET-NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 181
Query: 1217 GRIQSP--------FDPPDAPSQPEVTGYS--PSSVSLAWNPPANHGGRPITGYYVEKRE 1266
G++ S P+ P V S + L W P+ I Y ++ R
Sbjct: 182 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRT 240
Query: 1267 RGGEW---LRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQK 1323
+ + + +T +FTV DL+ +Y FR+ + E G G S ++ +
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 300
Query: 1324 RKPDPPEA-----PKVDRITKDSVTLSWRP-PKHDGGARIKGYIVQKRKKGGDWVDANSV 1377
+P + +V L W+ P + +I Y V + +
Sbjct: 301 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---QNY 357
Query: 1378 PVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDIT 1437
V TV + Y + N G S+ + P + +
Sbjct: 358 TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPV--------MDL 407
Query: 1438 VKAGEDFSIHVPFMAFPQPAA--------FWFANDSIIDDSDTRVHKQLTMNSASLVVKN 1489
+D + V W S T ++ + + N
Sbjct: 408 KAFPKDNMLWV----EWTTPRESVKKYILEWC-VLSDKAPCITDWQQEDGTVHRTYLRGN 462
Query: 1490 SQRSDGGQYRLQLK--NPAGF-DTATLHVRVL-DRPHPPENLHADEFAGDSLTLYWT-PP 1544
Y + + G ++ + P + + + L W P
Sbjct: 463 LAE--SKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLP 520
Query: 1545 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 1604
D I NY + + T V+ + + +L + Y R+ A G
Sbjct: 521 VDVQNGFIRNYTIFYRTIIGN-ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 579
Query: 1605 P 1605
Sbjct: 580 G 580
Score = 152 bits (384), Expect = 4e-38
Identities = 92/638 (14%), Positives = 163/638 (25%), Gaps = 116/638 (18%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVE-------IQFIGEPPPEVTWTIDGKELKTDSVRTTV 323
+ P + +++ + + + W + + +
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-- 58
Query: 324 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMY 383
I T S + + ++ + +T++ +
Sbjct: 59 --INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGL--------------- 101
Query: 384 LFERELLNLIVPDHLKNLWNMKKSLHPVLHC-----RGNHLPIMEAVKSRYIIEMAEYGL 438
P+ KNL + + + C R HL + ++
Sbjct: 102 ----------PPEKPKNL-SCIVNEGKKMRCEWDGGRETHLET------NFTLKSEWATH 144
Query: 439 DNW-KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP----LDPLFPDKPSPPEG 493
P + EN G DP++ KP+PP
Sbjct: 145 KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 204
Query: 494 P-LEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV----SLFYDV 548
+ S KL+W P IL Y I+ TWS + V
Sbjct: 205 LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 263
Query: 549 PRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDW-----GEDF 603
L EY+FR++ + G+ + ++ D P K G
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRT 323
Query: 604 VDLAWKP-PLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRV 662
V L WK P + I DY + + V A K V + Y +
Sbjct: 324 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY--TVNATKLTVNLT----NDRYLATL 377
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
N G S+ + + Q K + V W
Sbjct: 378 TVRNLVGKSDAAVLTIPACDFQATHPVMDLK----AFPKDNMLW-------------VEW 420
Query: 723 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS---FTIVP 779
T + +K + V S I + + TY E T+ P
Sbjct: 421 TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG-----NLAESKCYLITVTP 475
Query: 780 DHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRK--PDPPEAPKVDRITKDSVTLSWR-P 836
++ G P ++ P + ++ K+ L W
Sbjct: 476 ----------------VYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQL 519
Query: 837 PKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTL 874
P I+ Y + R G+ N V + +TL
Sbjct: 520 PVDVQNGFIRNYTIFYRTIIGNETAVN-VDSSHTEYTL 556
Score = 139 bits (351), Expect = 7e-34
Identities = 65/432 (15%), Positives = 94/432 (21%), Gaps = 98/432 (22%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y I+ R + TV L T Y FR+R G E
Sbjct: 233 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 292
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
D PS
Sbjct: 293 EASGI---------------------------------------TYEDRPS-------KA 306
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKP-PLDDGGSPITNYVV 1079
S +P G R + L WK P + I +Y V
Sbjct: 307 PSFWYKIDPSHTQGYRTVQ---------------------LVWKTLPPFEANGKILDYEV 345
Query: 1080 EKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFP 1139
+ + A + TN +Y + N G S+ +T
Sbjct: 346 TLTRWKSHLQNY-----TVNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPAC 396
Query: 1140 FTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGL--GYQQC 1197
P N + W PR I + V TD G
Sbjct: 397 DFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456
Query: 1198 HADVG--------------QTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVS 1243
G G +S PP +
Sbjct: 457 TYLRGNLAESKCYLITVTPVYADGPGSPESIK---AYLKQAPPSKGPTVRTKKVGKNEAV 513
Query: 1244 LAWN-PPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAI 1302
L W+ P + I Y + R G N +++ +T+ L Y R+ A
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV-NVDSSHTEYTLSSLTSDTLYMVRMAAY 572
Query: 1303 NEAGPGKPSKPT 1314
+ G + T
Sbjct: 573 TDEGGKDGPEFT 584
Score = 133 bits (336), Expect = 5e-32
Identities = 37/262 (14%), Positives = 71/262 (27%), Gaps = 22/262 (8%)
Query: 1434 RDITVKAGEDFSIH-------VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLV 1486
V+ +F+ + + W N I + + ++S+
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINR---TASSVT 67
Query: 1487 VKNSQRSDGGQY-RLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPR 1545
+ + + + + + P P+NL G + W R
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGR 127
Query: 1546 DNGGSEITNYVVEKKDYNSTVWTKVSSYVT-TPFVRVRNLAIGSTYEFRVMAENQYGLSK 1604
+ TN+ ++ + + T T + E V AEN G
Sbjct: 128 ETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185
Query: 1605 PALTIDPIKAKHPFDV-PGAPGAPK--GVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRL 1661
D I + V P P + + L W+ P I +Y ++ R
Sbjct: 186 S----DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS-IKSVIILKYNIQYRT 240
Query: 1662 ISDDKWIKASMAHIPDTSLKYT 1683
W + T +T
Sbjct: 241 KDASTWSQIPPEDTASTRSSFT 262
Score = 132 bits (332), Expect = 1e-31
Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 10/228 (4%)
Query: 454 TVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKPSPPEGPLEV--SNVTKESCKLSWRV 511
+ +Y+ + N+ G S+ P P+ + + W
Sbjct: 363 KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTT 422
Query: 512 PVDDGGAPILHYIIEKMDISRGT-WSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGES 570
P + IL + + T W TV Y L K YL V V + G
Sbjct: 423 PRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 482
Query: 571 DTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWK-PPLNDGGSPITDYIIQKKEK 629
+ P K G++ L W P++ I +Y I +
Sbjct: 483 SPESIKAYL----KQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 630 GNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
A+ V ++ T+ + LT Y R+ A + G + + +
Sbjct: 539 IGNET--AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 93.1 bits (231), Expect = 4e-19
Identities = 69/634 (10%), Positives = 123/634 (19%), Gaps = 233/634 (36%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVE-------IQFIGEPPPEVTWTIDGKELKTDSVRTTV 738
L P + +++ + + + W + + +
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 739 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI----VPDHLKNL--------- 785
+ T + + T ++ ++ TI P+ KNL
Sbjct: 61 RTASSVTFTDI--ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKK 118
Query: 786 ----WNTKKSLHP----VLHCRGNHLPIMEAVKSR------------------------- 812
W+ + H L + R
Sbjct: 119 MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 178
Query: 813 -------------------KPDPPEAPKVDRI--TKDSVTLSWRPPKHDGGARIKG---- 847
KP+PP V + L+W I
Sbjct: 179 NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT-NPSIKSVIILKYNIQ 237
Query: 848 ----------------------------------YIVQ---KRKKG-GDWVD-------- 861
Y+ + ++ G G W D
Sbjct: 238 YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 297
Query: 862 ----ANSVPVPNPVHTLLSIGYLS-------QFLAEEKKHGKLLLAKVENGYVIEKRDLT 910
S S + L + +GK+L Y +
Sbjct: 298 TYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKIL------DYEVTLTR-- 349
Query: 911 HGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGK 970
W + + + TV L Y + NL G S+ P
Sbjct: 350 ----WKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPACD------ 397
Query: 971 ELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPP 1030
P + + + W P
Sbjct: 398 ----------------------------------FQATHPVMDLKAFPKDNMLWVEWTTP 423
Query: 1031 ANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWS 1090
+ I + V ++
Sbjct: 424 R------------------------------------ESVKKYILEWCVLSDKAPCITDW 447
Query: 1091 KLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
+ Y L ++ Y V G P SI A P +
Sbjct: 448 QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQAPPSKGPTVR 503
Query: 1151 IVDWDTNNATLMWDR-PRTDGGSKIQGYKVEFRS 1183
N A L WD+ P I+ Y + +R+
Sbjct: 504 TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRT 537
Score = 41.5 bits (97), Expect = 0.003
Identities = 11/62 (17%), Positives = 17/62 (27%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
+ Y + A + Y + SL Y R+ A G +
Sbjct: 528 IRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 587
Query: 1935 PK 1936
PK
Sbjct: 588 PK 589
Score = 38.4 bits (89), Expect = 0.027
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 1883 AEDTNWRVANDYLV--KDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ + W ++ V L +Y FR++ G S S+E
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE 293
Score = 37.7 bits (87), Expect = 0.049
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 1881 DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
T+W+ + TY+ +L + Y V A G P S
Sbjct: 440 KAPCITDWQQEDG--TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 488
Score = 31.5 bits (71), Expect = 4.1
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ +S + + E V+A+NA G +
Sbjct: 144 HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 225 bits (576), Expect = 6e-66
Identities = 64/200 (32%), Positives = 114/200 (57%), Gaps = 3/200 (1%)
Query: 1682 YTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQ 1741
T+++ + +E +G+GAF V ++R TG +FA K I S + EI ++ +
Sbjct: 3 QTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKK 62
Query: 1742 LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
+ H ++ L D +E L+ + +SGGELF+RI +E + ++QV AVK+
Sbjct: 63 IKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGV-YTEKDASLVIQQVLSAVKY 121
Query: 1802 MHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVE 1860
+HE I+H D+KPEN++ T + + + DFGL+ K++ N ++ + GT + APE++
Sbjct: 122 LHENGIVHRDLKPENLLYLTPEENSKIMITDFGLS-KMEQNGIMSTACGTPGYVAPEVLA 180
Query: 1861 REPVGFYTDMWAVGVLAYVL 1880
++P D W++GV+ Y+L
Sbjct: 181 QKPYSKAVDCWSIGVITYIL 200
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase,
transferase, calcium-bindin binding, bumped kinase
inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum}
PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 230 bits (589), Expect = 2e-65
Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 11/210 (5%)
Query: 1677 DTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRK 1734
+L + + + Y+I+ +G G+FG V +C++R T +A K I + N + I +
Sbjct: 11 RENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILR 70
Query: 1735 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQ 1794
E++++ +L HP ++ L + ED ++ E +GGELF+ I SE + ++Q
Sbjct: 71 EVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR-FSEHDAARIIKQ 129
Query: 1795 VCEAVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEF 1853
V + +MH+ NI+H D+KPENI+ +++ ++K+IDFGL+T N +K GTA +
Sbjct: 130 VFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYY 189
Query: 1854 AAPEIVEREPVGFYT---DMWAVGVLAYVL 1880
APE++ Y D+W+ GV+ Y+L
Sbjct: 190 IAPEVLRGT----YDEKCDVWSAGVILYIL 215
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 224 bits (572), Expect = 5e-65
Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 51/251 (20%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS-----HNLEKELIRKE 1735
+ Y + IG G++GVV E +T I A K + + + + E I+ E
Sbjct: 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTE 78
Query: 1736 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITA----------------- 1778
+ +M +LHHP + L++ +ED+ + L+ E GG L +++
Sbjct: 79 VRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQ 138
Query: 1779 ----------------------PDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPEN 1816
D+ E + N MRQ+ A+ ++H + I H D+KPEN
Sbjct: 139 ICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPEN 198
Query: 1817 IMCQTRNSTNVKMIDFGLATKL---DPNEVVKIST--GTAEFAAPEIVE--REPVGFYTD 1869
+ T S +K++DFGL+ + + E ++T GT F APE++ E G D
Sbjct: 199 FLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258
Query: 1870 MWAVGVLAYVL 1880
W+ GVL ++L
Sbjct: 259 AWSAGVLLHLL 269
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and
4 calmodulin...; transferase, calcium dependent protein
kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB:
3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 228 bits (583), Expect = 1e-64
Identities = 61/222 (27%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 1663 SDDKWIKASMAHIPDTSL-KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI 1721
++ + + + P + + + Y ++++G+GA+G V CR++ T A K I
Sbjct: 11 RENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKII 70
Query: 1722 PVSH--NLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAP 1779
+ + +E+ ++ L HP ++ L+D FED L+ E GGELF+ I
Sbjct: 71 RKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIH- 129
Query: 1780 DYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKL 1838
K +E + ++QV V ++H+ NI+H D+KPEN++ +++ +K++DFGL+
Sbjct: 130 RMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189
Query: 1839 DPNEVVKISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
+ + +K GTA + APE++ + D+W++GV+ ++L
Sbjct: 190 ENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFIL 230
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase,
transferase, calcium-bindin binding, EF hand, bumped
kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii}
PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A*
3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A*
3ku2_A* 3hx4_A*
Length = 484
Score = 228 bits (582), Expect = 1e-64
Identities = 68/204 (33%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEID 1737
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+
Sbjct: 19 HSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQ 78
Query: 1738 IMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
++ QL HP ++ L++ FED L+ E +GGELF+ I + SE + +RQV
Sbjct: 79 LLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLS 137
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+ +MH+ I+H D+KPEN++ ++++ N+++IDFGL+T + ++ +K GTA + AP
Sbjct: 138 GITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAP 197
Query: 1857 EIVEREPVGFYTDMWAVGVLAYVL 1880
E++ D+W+ GV+ Y+L
Sbjct: 198 EVLHG-TYDEKCDVWSTGVILYIL 220
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 220 bits (564), Expect = 1e-64
Identities = 67/209 (32%), Positives = 118/209 (56%), Gaps = 11/209 (5%)
Query: 1678 TSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS--HNLEKELIRKE 1735
+L + + + Y+I+ +G G+FG V +C++R T +A K I + N + I +E
Sbjct: 12 ENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILRE 71
Query: 1736 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQV 1795
++++ +L HP ++ L + ED ++ E +GGELF+ I SE + ++QV
Sbjct: 72 VELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR-FSEHDAARIIKQV 130
Query: 1796 CEAVKHMHEKNIIHLDVKPENIMCQTRN-STNVKMIDFGLATKLDPNEVVKISTGTAEFA 1854
+ +MH+ NI+H D+KPENI+ +++ ++K+IDFGL+T N +K GTA +
Sbjct: 131 FSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI 190
Query: 1855 APEIVEREPVGFYT---DMWAVGVLAYVL 1880
APE++ Y D+W+ GV+ Y+L
Sbjct: 191 APEVLRGT----YDEKCDVWSAGVILYIL 215
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 222 bits (569), Expect = 1e-64
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 9/216 (4%)
Query: 1669 KASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE 1728
+ I + + D Y++ E+IG G++ V RC + T FA K I S
Sbjct: 3 TVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS---- 58
Query: 1729 KELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAE 1787
K +EI+I+ + HP +I L D ++D + ++ E + GGEL ++I + SE E
Sbjct: 59 KRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKF-FSERE 117
Query: 1788 VINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTR--NSTNVKMIDFGLATKLDP-NEVV 1844
+ + + V+++H + ++H D+KP NI+ N ++++ DFG A +L N ++
Sbjct: 118 ASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLL 177
Query: 1845 KISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
TA F APE++ER+ D+W++GVL Y +
Sbjct: 178 MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTM 213
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 223 bits (570), Expect = 1e-64
Identities = 69/201 (34%), Positives = 122/201 (60%), Gaps = 4/201 (1%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMN 1740
++ D +++ E+G GA +V+RC+++ T +A K + + ++K+++R EI ++
Sbjct: 46 SNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT--VDKKIVRTEIGVLL 103
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+L HP +I L + FE E+ L+ E ++GGELF+RI Y SE + + ++Q+ EAV
Sbjct: 104 RLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGY-YSERDAADAVKQILEAVA 162
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIV 1859
++HE I+H D+KPEN++ T +K+ DFGL+ ++ ++K GT + APEI+
Sbjct: 163 YLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEIL 222
Query: 1860 EREPVGFYTDMWAVGVLAYVL 1880
G DMW+VG++ Y+L
Sbjct: 223 RGCAYGPEVDMWSVGIITYIL 243
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7
linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 226 bits (577), Expect = 2e-64
Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 1672 MAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEK 1729
MA I + + Y + EE+G GAF VV RC + G +AA I +
Sbjct: 1 MATIT------CTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDH 54
Query: 1730 ELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVI 1789
+ + +E I L HP ++ LHD+ ++ LIF+ ++GGELFE I A +Y SEA+
Sbjct: 55 QKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREY-YSEADAS 113
Query: 1790 NYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLD-PNEVVKIS 1847
+ ++Q+ EAV H H+ ++H ++KPEN++ ++ VK+ DFGLA +++ +
Sbjct: 114 HCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGF 173
Query: 1848 TGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
GT + +PE++ ++P G D+WA GV+ Y+L
Sbjct: 174 AGTPGYLSPEVLRKDPYGKPVDLWACGVILYIL 206
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB:
2qg5_A*
Length = 277
Score = 219 bits (560), Expect = 3e-64
Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMN 1740
+ +Y + IG G++G V ++ T AAK IP + + ++EI+IM
Sbjct: 2 STKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMK 61
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
L HP +I L++ FED+ ++ L+ E +GGELFER+ E++ M+ V AV
Sbjct: 62 SLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRV-FRESDAARIMKDVLSAVA 120
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIV 1859
+ H+ N+ H D+KPEN + T + + +K+IDFGLA + P ++++ GT + +P+++
Sbjct: 121 YCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVL 180
Query: 1860 EREPVGFYT---DMWAVGVLAYVL 1880
E Y D W+ GV+ YVL
Sbjct: 181 EGL----YGPECDEWSAGVMMYVL 200
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 222 bits (568), Expect = 6e-64
Identities = 60/300 (20%), Positives = 105/300 (35%), Gaps = 12/300 (4%)
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
+ ++ + + A + G + +S + +E P +S G
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQ---KSMYLDIEYAP----KFISNQTIYYSWEGNPI 118
Query: 1445 SIHVPFMAFPQPAAFWFANDSIID-DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK 1503
+I + P + W + ++ + T + T L + + +D G+Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 1504 NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYN 1563
N G + + D P P + E + + + + P +GG I +Y V+ K+
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 1564 STVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
S +W V S+ V + NL +TYE RV A N G + P P
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL--PVREPSP 296
Query: 1624 PGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
P G S+ S L + DGG+PI YIV+ R + +
Sbjct: 297 PS-IHGQPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILE 354
Score = 191 bits (488), Expect = 3e-53
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 7/202 (3%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
D P +P ++ S ++ +++N P +HGG PI Y V+ +E E +
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
+++L YE RV A+N G G SK R+P PP + S
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ--TLPVREPSPPS-IHGQPSSGKSFK 310
Query: 1344 LSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
LS DGGA I YIV+ R K D V + +L Y ++ A
Sbjct: 311 LSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA 369
Query: 1403 NEAGNSEPGKQSGPVIVEEQPN 1424
N G SEP + +PN
Sbjct: 370 NRLGYSEPTVYEFS--MPPKPN 389
Score = 186 bits (474), Expect = 2e-51
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 6/199 (3%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-SL 544
D PS P G ++ +++ + K+S+ P GG PI HY ++ +++ W
Sbjct: 194 DVPSSPYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQT 252
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFV 604
+ L Y RV AVN G+ D + EP P +
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE--IFQTLPVREPSPP-SIHGQPSSGKSF 309
Query: 605 DLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIA 664
L+ +DGG+PI +YI++ + K +V NK + + L YE ++ A
Sbjct: 310 KLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITA 368
Query: 665 VNEAGPSEPSDASDIIMCK 683
N G SEP+ + K
Sbjct: 369 ANRLGYSEPTVYEFSMPPK 387
Score = 183 bits (466), Expect = 2e-50
Identities = 74/445 (16%), Positives = 131/445 (29%), Gaps = 88/445 (19%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
+ LVC G P P +T W + + + S + ++ +
Sbjct: 15 NGQVTLVCD-------AEGEP----IPEIT-WKRAV---DGFTFTEGDKSLDGRIEVKGQ 59
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
+ + D+K + + A ++ G + S + + A
Sbjct: 60 HGSS-------------SLHIKDVKLSDSGRYDCEAASRIGG---HQKSMYLDIE---YA 100
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIV 332
PK + G +N+ PP + W D L + S G I+
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE--------TISKTNTTTISSKNMMYL 384
T +D G Y+ N G + + + + I + + TT
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVS----- 215
Query: 385 FERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTV 444
+N S +PI Y +++ E + WK V
Sbjct: 216 -----------------FNKPDS--------HGGVPI-----HHYQVDVKEVASEIWKIV 245
Query: 445 PGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF-----PDKPSPPEGPLEVSN 499
+ + L Y R+ N G + +PSPP +
Sbjct: 246 RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP--SIHGQP 303
Query: 500 VTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV--SLFYDVPRLIHRKEY 557
+ +S KLS DDGGAPIL YI++ + + L Y
Sbjct: 304 SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGY 362
Query: 558 LFRVKAVNSIGESDTLETTKTTVAR 582
++ A N +G S+ + +
Sbjct: 363 EVQITAANRLGYSEPTVYEFSMPPK 387
Score = 180 bits (459), Expect = 2e-49
Identities = 72/492 (14%), Positives = 117/492 (23%), Gaps = 174/492 (35%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I D+ + A + G + S I APK + G +N+
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIE-----YAPKFISNQTIYYSWEGNPINI 120
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
PP + W D L + S G I+ T +D G Y+ N
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 768 SGRDEGSFT-IVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRIT 826
G + + D P P K+ ++
Sbjct: 181 IGTRFQEYILALAD--------------------------------VPSSPYGVKIIELS 208
Query: 827 KDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAE 886
+ + +S+ P VP+
Sbjct: 209 QTTAKVSFNKPD----------------------SHGGVPI------------------- 227
Query: 887 EKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRA 946
+ Y ++ +++ W +H + L TTYE RV A
Sbjct: 228 -------------HHYQVDVKEVA-SEIWKIVRSHGV--QTMVVLNNLEPNTTYEIRVAA 271
Query: 947 ENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDP 1006
N +G + + P
Sbjct: 272 VNGKGQGDYSKI--------------------------------------EIFQTLPVRE 293
Query: 1007 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPP 1066
P PS S S L+
Sbjct: 294 PSPPS-IHGQPSSGKSFKLSITKQ------------------------------------ 316
Query: 1067 LDDGGSPITNYVVEKYE-SATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVS 1125
DDGG+PI Y+V+ W + + L+ Y ++ A N+ G S
Sbjct: 317 -DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS 375
Query: 1126 EPLELDNSITAK 1137
EP + S+ K
Sbjct: 376 EPTVYEFSMPPK 387
Score = 175 bits (446), Expect = 1e-47
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 7/198 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 132
PS P G K +++++ + + P GG I HY V+ ++ + W + T
Sbjct: 196 PSSPYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 192
NL Y RV AVN G+ + I P P P L
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYS--KIEIFQTLPVREPSPPS-IHGQPSSGKSFKL 311
Query: 193 EWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVN 251
T DGG+PI +YI++ + K V N + L+ YE ++ A N
Sbjct: 312 SITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAAN 370
Query: 252 KGGPGEPSKASAPVTCKP 269
+ G EP+ + KP
Sbjct: 371 RLGYSEPTVYEFSMPPKP 388
Score = 146 bits (371), Expect = 8e-38
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
+ D PS P G + +++ + +S+ P GG PI +Y V+ E A+ W + S
Sbjct: 192 LADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGV 250
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTN 1157
+ LE N Y RV A N G + + I P P PP
Sbjct: 251 QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK--IEIFQTLPVREPSPPS-IHGQPSSGK 307
Query: 1158 NATLMWDRPRTDGGSKIQGYKVEFRS 1183
+ L + DGG+ I Y V++RS
Sbjct: 308 SFKLSITKQD-DGGAPILEYIVKYRS 332
Score = 113 bits (285), Expect = 1e-26
Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 27/216 (12%)
Query: 1233 EVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREG 1292
+V P+S+ W + + + L +
Sbjct: 123 DVKSNPPASIH--WR----RDKLVLPAKNTTNLKT------YSTGRKMILEIAPTSDNDF 170
Query: 1293 GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHD 1352
G+Y A N G P P K+ +++ + +S+ P
Sbjct: 171 GRYN--CTATNHIG-----TRFQEYILALA-DVPSSPYGVKIIELSQTTAKVSFNKPDSH 222
Query: 1353 GGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGK 1412
GG I Y V ++ + + + NL Y RV AVN G +
Sbjct: 223 GGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY-- 280
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHV 1448
S I + P + I + S +
Sbjct: 281 -SKIEIFQTLPVRE----PSPPSIHGQPSSGKSFKL 311
Score = 111 bits (279), Expect = 8e-26
Identities = 41/267 (15%), Positives = 89/267 (33%), Gaps = 38/267 (14%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID------DSDTRVHKQLTMNSASLVV 1487
++ T ++ P P W D R+ + S+SL +
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH---PPENLHAD---------EFAGD 1535
K+ + SD G+Y + + G ++++ + P ++ + +
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 1536 -SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+++W RD + +T K S + + + +
Sbjct: 128 PPASIHWR--RD--KLVLPA--------KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 1595 MAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQR 1654
A N G + DVP +P K ++ ++ + + ++KP GG PI
Sbjct: 176 TATNHIGTRFQEYILALA------DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH 229
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLK 1681
Y V+ + ++ + W +H T +
Sbjct: 230 YQVDVKEVASEIWKIVR-SHGVQTMVV 255
Score = 96.8 bits (241), Expect = 6e-21
Identities = 49/303 (16%), Positives = 85/303 (28%), Gaps = 44/303 (14%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
P + + ++ YE V C P +TW + +
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG--DKSLDGRIEVKG 58
Query: 2071 SLR--KLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQSAFCYEGQSV 2111
L I + D+ + AP+F+ + +EG +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 2112 KFTCRVIAIATPTLTWFHNNQEL--KQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
+C V + ++ W + L K + G I T D G Y A
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 2170 NHYGYREEVVFLNVQRKYDLP---VIHYKNHRRANKYDVIWL----HNN----------K 2212
NH G R + L + P I + A V + H K
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAK---VSFNKPDSHGGVPIHHYQVDVK 235
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGN 2272
E+ S + + + P + A N +G+ S + Q ++ +
Sbjct: 236 EVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295
Query: 2273 PVS 2275
P S
Sbjct: 296 PPS 298
Score = 86.0 bits (213), Expect = 2e-17
Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 30/244 (12%)
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
+ S+ + + A N G Q + + + P+ P + +
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRF---QEYILALADVPSSP-------YGVKIIELSQT 210
Query: 1445 SIHVPFMAFPQPAAFWFANDSII---------DDSDTRVHKQLTMNSASLVVKNSQRSDG 1495
+ V +F +P I S+ + +V+ N + +
Sbjct: 211 TAKV---SFNKPD---SHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTT 264
Query: 1496 GQYRLQLKNPAGFDTATLHVRVL---DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEI 1552
+ R+ N G + R P ++H +G S L T D GG+ I
Sbjct: 265 YEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDD-GGAPI 323
Query: 1553 TNYVVEKKDYNSTV-WTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDP 1611
Y+V+ + + W + + + +L YE ++ A N+ G S+P +
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Query: 1612 IKAK 1615
+ K
Sbjct: 384 MPPK 387
Score = 64.4 bits (157), Expect = 2e-10
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 45/163 (27%)
Query: 2204 DVIWLHNNKEIKPSND-------FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
++ W + +L I ++ DSG Y CEA + G
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 90
Query: 2257 SSCTLLVQ---------------------------------VSWYKDGNPV-SDDPATYQ 2282
S L ++ + W +D + + + +
Sbjct: 91 KSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150
Query: 2283 FTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLNVV 2321
G+ ++I T+ +D G+Y+ A +G + L +
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 52.5 bits (126), Expect = 9e-07
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 268 KPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL------KTDSVRT 321
+P + K + + + GEP PE+TW K+ R
Sbjct: 1 QPHIIQLK------NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI 54
Query: 322 TVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
V + ++ + K SDSG Y E + G + S + +
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Score = 51.7 bits (124), Expect = 2e-06
Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 45/195 (23%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELK-QSVKFMKRYAGDDY 2066
+ AP+F+ + +EG + +C V + ++ W + L ++ +K Y+
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 2067 TFYSSLRKLQIDRFSIQD---------TSFDRRQAAPRFVIK-----PQSAFCYEGQSVK 2112
L+I S D R + P E
Sbjct: 158 M------ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQ-- 209
Query: 2113 FTCRVIAIATPTLTW----FHNN----------QELKQSVKFMKRYAGDDYTFVINRTKM 2158
T +++ H +E+ + + R G V+N +
Sbjct: 210 --------TTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEP 261
Query: 2159 EDRGEYIIRAENHYG 2173
E + A N G
Sbjct: 262 NTTYEIRVAAVNGKG 276
Score = 51.3 bits (123), Expect = 3e-06
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 429 YIIEMAEYGLDN-WKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF--P 485
YI++ ++ W K+ ++ L Y +I N G SEP F P
Sbjct: 326 YIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385
Query: 486 DKPS 489
KP+
Sbjct: 386 PKPN 389
Score = 49.8 bits (119), Expect = 7e-06
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 1886 TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERP 1935
+ + I+ L YE ++ A N G+S+P+ P
Sbjct: 336 EDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385
Score = 48.3 bits (115), Expect = 2e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1875 VLAYVLDVAEDTN--WRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+ Y +DV E + W++ + ++++L YE RV A N G S
Sbjct: 227 IHHYQVDVKEVASEIWKIVRSH-GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285
Score = 46.7 bits (111), Expect = 6e-05
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL------KTDSVRTTVTSIG 742
P I LK+ + + GEP PE+TW K+ R V
Sbjct: 2 PHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 743 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ ++ + K SDSG Y E + G + S +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB:
1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 218 bits (557), Expect = 1e-62
Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 67/404 (16%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR--SP 1099
SPP ++ ++SW+ IT Y + + + L V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNA 1159
+ L +Y V S P+ S T PP + + +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPI----SDTII---PAVPPPTDLRFTNIGPDTM 111
Query: 1160 TLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQG-- 1217
+ W P + + V + + D + +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEED----VAELSISPSDNAV-------VLTNLL 157
Query: 1218 -------RIQS-------------PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPI 1257
+ S D+P+ + + + +S ++ W P I
Sbjct: 158 PGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRA----TI 213
Query: 1258 TGYYVEKRERGG-EWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
TGY + R + P + + T+ +L G +Y ++A+N
Sbjct: 214 TGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ-- 271
Query: 1317 VQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDAN 1375
Q D P +V T S+ +SW P ++ Y + + GG+ V
Sbjct: 272 -----QSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEF 322
Query: 1376 SVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+VP T+ L G +YT V AV G+S S P+ +
Sbjct: 323 TVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA--SSKPISI 364
Score = 181 bits (461), Expect = 6e-50
Identities = 64/398 (16%), Positives = 113/398 (28%), Gaps = 58/398 (14%)
Query: 1225 PPDAPSQPEVTGYS-PSSVSLAWNPPANHGGRPITGYYVEKRERGGEW--LRANNYPTTN 1281
P P+ + ++++W ITGY + G+
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQ 57
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS 1341
+ T +L G +Y V + + P T PP + I D+
Sbjct: 58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-------IIPAVPPPTDLRFTNIGPDT 110
Query: 1342 VTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVI 1400
+ ++W PP + ++V+ K + V S+ + + NL G EY V
Sbjct: 111 MRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVS 167
Query: 1401 AVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFW 1460
+V E S P + L I S V W
Sbjct: 168 SVYEQHESTPLRGRQKT-----------GLDSPTGIDFSDITANSFTV----------HW 206
Query: 1461 FANDSII----------DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK--NPAGF 1508
A + I S ++ + S+ + N G +Y + + N
Sbjct: 207 IAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTP--GTEYVVSIVALNGRE- 263
Query: 1509 DTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWT 1568
++ L + P +L SL + W P + Y + +
Sbjct: 264 ESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPV 319
Query: 1569 KVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
+ + + + L G Y V A G S
Sbjct: 320 QEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 357
Score = 166 bits (421), Expect = 1e-44
Identities = 71/444 (15%), Positives = 109/444 (24%), Gaps = 133/444 (29%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY I T+G V T L G Y V S PI+
Sbjct: 33 GYRITTTP-TNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
P+ T P
Sbjct: 92 -------------------------------------------IPAVPPPTDLRFTNIGP 108
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
++ + W PP + +TN++V
Sbjct: 109 DTMRVTWAPPPS---------------------------------------IDLTNFLVR 129
Query: 1081 KYESATGFWSKLSSFVRSP-AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFP 1139
S S A + L +Y V + + S PL
Sbjct: 130 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG-------RQ 182
Query: 1140 FTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR---------------ST 1184
T D P D N+ T+ W PR + I GY++ S
Sbjct: 183 KTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSR 238
Query: 1185 RTATDCGLG----YQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGY 1237
+ T L Y ++P D P EV
Sbjct: 239 NSITLTNLTPGTEYVVSIVALNGREESPLLIG-----------QQSTVSDVPRDLEVVAA 287
Query: 1238 SPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTTNLNFTVHDLREGGKYE 1296
+P+S+ ++W+ PA + Y + E GG ++ P + T+ L+ G Y
Sbjct: 288 TPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYT 343
Query: 1297 FRVIAINEAGPGKPSKPTDIVQCK 1320
V A+ G S + +
Sbjct: 344 ITVYAVTGRGDSPASSKPISINYR 367
Score = 162 bits (412), Expect = 2e-43
Identities = 51/251 (20%), Positives = 81/251 (32%), Gaps = 19/251 (7%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP 485
+ +++ + + P + + L G +YV + + S PL
Sbjct: 124 TNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 183
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-- 543
P G ++ S++T S + W P A I Y I
Sbjct: 184 TGLDSPTG-IDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSR 238
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF 603
+ L EY+ + A+N ES L ++TV D P V
Sbjct: 239 NSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV-------SDVPRDLEVVAATPTS 291
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVI 663
+ ++W P + Y I E G + VP +K+ I L G +Y V
Sbjct: 292 LLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVY 347
Query: 664 AVNEAGPSEPS 674
AV G S S
Sbjct: 348 AVTGRGDSPAS 358
Score = 153 bits (388), Expect = 3e-40
Identities = 60/326 (18%), Positives = 106/326 (32%), Gaps = 53/326 (16%)
Query: 1143 PDPPGQPQIVDW-DTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADV 1201
PP + DT T+ W+R I GY++ T G V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTN-----GQQGNSLEEVV 53
Query: 1202 GQTPHGWWLQDSR-----------IQGRIQSP------FDPPDAPSQPEVTGYSPSSVSL 1244
+ ++ +S P+ T P ++ +
Sbjct: 54 HADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRV 113
Query: 1245 AWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAIN 1303
W PP + +T + V + E + + ++ + +L G +Y V ++
Sbjct: 114 TWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVY 170
Query: 1304 EAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ 1363
E P + QK D P IT +S T+ W P+ A I GY ++
Sbjct: 171 EQHESTPLRGR-------QKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIR 219
Query: 1364 KRKKGGD-WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ 1422
+ + VP T+ NL+ G EY ++A+N P+++ +Q
Sbjct: 220 HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE-------ESPLLIGQQ 272
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHV 1448
RD+ V A S+ +
Sbjct: 273 STVS----DVPRDLEVVAATPTSLLI 294
Score = 149 bits (378), Expect = 6e-39
Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 21/256 (8%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKE--FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF 484
+ Y I ++ + T L+ G +Y + T S P+
Sbjct: 32 TGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS- 543
PP L +N+ ++ +++W P + ++++ + A +++S
Sbjct: 92 IPAVPPP-TDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDV-AELSISP 146
Query: 544 --LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGE 601
+ L+ EY+ V +V ES L + T D+P D
Sbjct: 147 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-------LDSPTGIDFSDITA 199
Query: 602 DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFR 661
+ + W P + IT Y I+ + VP ++ + + +LT G EY
Sbjct: 200 NSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 255
Query: 662 VIAVNEAGPSEPSDAS 677
++A+N S
Sbjct: 256 IVALNGREESPLLIGQ 271
Score = 147 bits (373), Expect = 3e-38
Identities = 57/363 (15%), Positives = 112/363 (30%), Gaps = 39/363 (10%)
Query: 1326 PDPPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDA--NSVPVPNP 1382
PP + +T+SW I GY + G ++ V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGE 1442
T NLS G EY V V + S P + P D+
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPIS----DTIIPAVPPP-------TDLRFTNIG 107
Query: 1443 DFSIHVPFMAFPQPAAFWFA-NDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQ 1501
++ V + P F S + + + ++ + ++V+ N G +Y +
Sbjct: 108 PDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLP--GTEYVVS 165
Query: 1502 LK--NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEK 1559
+ ++ L R P + + +S T++W PR + IT Y +
Sbjct: 166 VSSVYEQH-ESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRH 220
Query: 1560 KDYNSTVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPF 1618
+ + + + + + NL G+ Y ++A N S +
Sbjct: 221 HPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-------QQS 273
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
V P + V +T S+ + W P ++ Y + + ++ +
Sbjct: 274 TVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKS 329
Query: 1679 SLK 1681
+
Sbjct: 330 TAT 332
Score = 123 bits (309), Expect = 6e-30
Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 21/196 (10%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P G + S+IT +S + W APR I Y + V +
Sbjct: 186 LDSPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNS 240
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD 191
NL G +Y + A+N ES P+ D P V +
Sbjct: 241 ITLTNLTPGTEYVVSIVALNGREES-------PLLIGQQSTVSDVPRDLEVVAATPTSLL 293
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV 250
+ W P + Y I G + VP + + ++ LK G +Y V AV
Sbjct: 294 ISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAV 349
Query: 251 NKGGPGEPSKASAPVT 266
G S S P++
Sbjct: 350 TGRGDSPAS--SKPIS 363
Score = 115 bits (289), Expect = 3e-27
Identities = 36/197 (18%), Positives = 60/197 (30%), Gaps = 17/197 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 132
SPP +N + W DI Y + + + V +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 190
+NL G +YN V V ES+P T P T+ G D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVP----ISDTIIPA---VPPPTDLRFTNIGPDTM 111
Query: 191 DLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA 249
+ W PP ++ +++ P + + A + +L G EY V +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168
Query: 250 VNKGGPGEPSKASAPVT 266
V + P +
Sbjct: 169 VYEQHESTPLRGRQKTG 185
Score = 114 bits (288), Expect = 3e-27
Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 16/193 (8%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV---SL 544
SPP +N +SW I Y I + + V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFV 604
L EY V V ES + T P + G D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP-------AVPPPTDLRFTNIGPDTM 111
Query: 605 DLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIA 664
+ W PP + +T+++++ N + L + + V + +L G EY V +
Sbjct: 112 RVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168
Query: 665 VNEAGPSEPSDAS 677
V E S P
Sbjct: 169 VYEQHESTPLRGR 181
Score = 91.4 bits (227), Expect = 2e-19
Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 15/170 (8%)
Query: 1515 VRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE-KKDYNSTVWTKVSSY 1573
++ PP +L D++ + W PP ++TN++V N ++S
Sbjct: 89 DTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSIS 145
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDST 1633
+ V + NL G+ Y V + + S P +P D T
Sbjct: 146 PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG-------RQKTGLDSPTGIDFSDIT 198
Query: 1634 EDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
+S ++ W PR + I Y + + S+ T
Sbjct: 199 ANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 244
Score = 84.5 bits (209), Expect = 5e-17
Identities = 31/157 (19%), Positives = 42/157 (26%), Gaps = 8/157 (5%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
Y I T+ LT G +YV I N S L
Sbjct: 216 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV 275
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGM--TVSLF 545
P LEV T S +SW P + +Y I + +
Sbjct: 276 SDVPR-DLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKST 330
Query: 546 YDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ L +Y V AV G+S + R
Sbjct: 331 ATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
Score = 54.5 bits (131), Expect = 3e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDA 862
P++ +S D P +V T S+ +SW P ++ Y + + GG+ V
Sbjct: 266 PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQE 321
Query: 863 NSVPVPNPVHTL 874
+VP T+
Sbjct: 322 FTVPGSKSTATI 333
Score = 48.3 bits (115), Expect = 2e-05
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 872
D P IT +S T+ W P+ A I GY ++ + + VP
Sbjct: 186 LDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSI 241
Query: 873 TL 874
TL
Sbjct: 242 TL 243
Score = 46.4 bits (110), Expect = 8e-05
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 872
PP + I D++ ++W PP + ++V+ K + V S+ +
Sbjct: 95 VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 151
Query: 873 TL 874
L
Sbjct: 152 VL 153
Score = 39.0 bits (91), Expect = 0.017
Identities = 6/53 (11%), Positives = 14/53 (26%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERP 1935
+ + + + +L G +Y + A N S +
Sbjct: 223 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV 275
Score = 37.9 bits (88), Expect = 0.033
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 1882 VAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERP 1935
++ D ++ +LL G +Y V + S P ++
Sbjct: 132 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 185
Score = 37.1 bits (86), Expect = 0.067
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ T + L G DY V A G S SS
Sbjct: 313 TGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360
Score = 34.0 bits (78), Expect = 0.51
Identities = 7/54 (12%), Positives = 12/54 (22%)
Query: 1878 YVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ + +L G +Y V S P S +
Sbjct: 37 TTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 222 bits (567), Expect = 2e-62
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 22/217 (10%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------------VSHNL 1727
K + + Y + ++G+GA+G V C+E+ + A K I +
Sbjct: 29 KKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEK 88
Query: 1728 EKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAE 1787
E I EI ++ L HP +I L D FED L+ EF GGELFE+I E +
Sbjct: 89 FHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK-FDECD 147
Query: 1788 VINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKI 1846
N M+Q+ + ++H+ NI+H D+KPENI+ + +NS N+K++DFGL++ + ++
Sbjct: 148 AANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRD 207
Query: 1847 STGTAEFAAPEIVEREPVGFYT---DMWAVGVLAYVL 1880
GTA + APE+++++ Y D+W+ GV+ Y+L
Sbjct: 208 RLGTAYYIAPEVLKKK----YNEKCDVWSCGVIMYIL 240
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 214 bits (548), Expect = 2e-62
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 21/222 (9%)
Query: 1675 IPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE------ 1728
+P + T Y++Y+ E +G G VV RC + T +A K I V+
Sbjct: 6 LPGS--HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEV 63
Query: 1729 ---KELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMS 1784
+E KE+DI+ ++ HP +I L D +E + L+F+ + GELF+ +T +S
Sbjct: 64 QELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKV-TLS 122
Query: 1785 EAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVV 1844
E E MR + E + +H+ NI+H D+KPENI+ + N+K+ DFG + +LDP E +
Sbjct: 123 EKETRKIMRALLEVICALHKLNIVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKL 180
Query: 1845 KISTGTAEFAAPEIVEREPVGFYT------DMWAVGVLAYVL 1880
+ GT + APEI+E + DMW+ GV+ Y L
Sbjct: 181 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTL 222
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 215 bits (550), Expect = 2e-62
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 15/212 (7%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDIMNQL 1742
S+ + + + +G GA V R R +KTG++FA K L ++ +E +++ +L
Sbjct: 5 STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64
Query: 1743 HHPKLINLHDAFEDD--DEMVLIFEFLSGGELFERITAP--DYKMSEAEVINYMRQVCEA 1798
+H ++ L E+ VLI EF G L+ + P Y + E+E + +R V
Sbjct: 65 NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTR--NSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+ H+ E I+H ++KP NIM + K+ DFG A +L+ +E GT E+ P
Sbjct: 125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHP 184
Query: 1857 EIVEREPVGF-----YT---DMWAVGVLAYVL 1880
++ ER + Y D+W++GV Y
Sbjct: 185 DMYERAVLRKDHQKKYGATVDLWSIGVTFYHA 216
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding,
metal-binding, NUCL binding, serine/threonine-protein
kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 214 bits (548), Expect = 5e-62
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 10/204 (4%)
Query: 1683 TSSVYDHYDIL---EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIM 1739
S Y HYD+ + +G G+F + +C +K+ FA K I + +KEI +
Sbjct: 3 DSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITAL 59
Query: 1740 NQL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEA 1798
HP ++ LH+ F D L+ E L+GGELFERI + SE E MR++ A
Sbjct: 60 KLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKH-FSETEASYIMRKLVSA 118
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDP-NEVVKISTGTAEFAAP 1856
V HMH+ ++H D+KPEN++ N +K+IDFG A P N+ +K T +AAP
Sbjct: 119 VSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAP 178
Query: 1857 EIVEREPVGFYTDMWAVGVLAYVL 1880
E++ + D+W++GV+ Y +
Sbjct: 179 ELLNQNGYDESCDLWSLGVILYTM 202
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 213 bits (545), Expect = 9e-62
Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 17/215 (7%)
Query: 1682 YTSSVYDHYDILEE-IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMN 1740
++ D Y + E+ +G GA V C T +A K I + + +E++++
Sbjct: 6 FSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLY 65
Query: 1741 QL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
Q H ++ L + FE++D L+FE + GG + I + +E E ++ V A+
Sbjct: 66 QCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRH-FNELEASVVVQDVASAL 124
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNS-TNVKMIDFGLATKLDPNEVVKIST--------GT 1850
+H K I H D+KPENI+C+ N + VK+ DF L + + N + G+
Sbjct: 125 DFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGS 184
Query: 1851 AEFAAPEIVEREPVGF--YT---DMWAVGVLAYVL 1880
AE+ APE+VE Y D+W++GV+ Y+L
Sbjct: 185 AEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYIL 219
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 212 bits (542), Expect = 3e-61
Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 14/211 (6%)
Query: 1682 YTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP--------VSHNLEKELIR 1733
Y ++ D Y + + +G+GA G V ERKT A K I +
Sbjct: 4 YPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVE 63
Query: 1734 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMR 1793
EI+I+ +L+HP +I + + F+ +D ++ E + GGELF+++ ++ EA Y
Sbjct: 64 TEIEILKKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFY 121
Query: 1794 QVCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLDPNEVVKISTGTAE 1852
Q+ AV+++HE IIH D+KPEN++ ++ +K+ DFG + L +++ GT
Sbjct: 122 QMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPT 181
Query: 1853 FAAPEIVEREPVGFYT---DMWAVGVLAYVL 1880
+ APE++ Y D W++GV+ ++
Sbjct: 182 YLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 212
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 213 bits (544), Expect = 3e-60
Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 14/212 (6%)
Query: 1681 KYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP--------VSHNLEKELI 1732
Y ++ D Y + + +G+GA G V ERKT A + I +
Sbjct: 128 VYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNV 187
Query: 1733 RKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYM 1792
EI+I+ +L+HP +I + + F+ +D ++ E + GGELF+++ ++ EA Y
Sbjct: 188 ETEIEILKKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYF 245
Query: 1793 RQVCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLDPNEVVKISTGTA 1851
Q+ AV+++HE IIH D+KPEN++ ++ +K+ DFG + L +++ GT
Sbjct: 246 YQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTP 305
Query: 1852 EFAAPEIVEREPVGFYT---DMWAVGVLAYVL 1880
+ APE++ Y D W++GV+ ++
Sbjct: 306 TYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 337
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 210 bits (536), Expect = 3e-60
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 1669 KASMAHIPDTSLKYTSSVYDHYDILEE-IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL 1727
+ + + +V D Y + ++ +G G G V C R+TG A K +
Sbjct: 9 SSGLEVLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLY----- 63
Query: 1728 EKELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMV----LIFEFLSGGELFERITA-PDY 1781
+ R+E+D Q P ++ + D +E+ +I E + GGELF RI D
Sbjct: 64 DSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQ 123
Query: 1782 KMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRN-STNVKMIDFGLATKLDP 1840
+E E MR + A++ +H NI H DVKPEN++ ++ +K+ DFG A +
Sbjct: 124 AFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ 183
Query: 1841 NEVVKISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
N + T + APE++ E DMW++GV+ Y+L
Sbjct: 184 NALQTP-CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL 222
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 210 bits (537), Expect = 5e-60
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 18/276 (6%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
+ P + + + ++ + +++ + ++
Sbjct: 26 IRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPD 85
Query: 1680 LKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS--------HNLEKEL 1731
Y YD + IG G VV RC R TG+ FA K + V+ +E
Sbjct: 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREA 145
Query: 1732 IRKEIDIMNQLH-HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVIN 1790
R+E I+ Q+ HP +I L D++E M L+F+ + GELF+ +T +SE E +
Sbjct: 146 TRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRS 204
Query: 1791 YMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGT 1850
MR + EAV +H NI+H D+KPENI+ ++ +++ DFG + L+P E ++ GT
Sbjct: 205 IMRSLLEAVSFLHANNIVHRDLKPENILLD--DNMQIRLSDFGFSCHLEPGEKLRELCGT 262
Query: 1851 AEFAAPEIVEREPVGFYT------DMWAVGVLAYVL 1880
+ APEI++ + D+WA GV+ + L
Sbjct: 263 PGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTL 298
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 211 bits (538), Expect = 5e-60
Identities = 72/395 (18%), Positives = 120/395 (30%), Gaps = 64/395 (16%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
SPP ++ ++SW+ IT Y + + + L V +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 1101 -YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNA 1159
L +Y V S P+ S T VD ++
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPI----SDTII---PEVPQLTDLSFVDITDSSI 112
Query: 1160 TLMWDRPRTDGGSKIQGYKVEFR---------------STRTATDCGL----GYQ---QC 1197
L W S I GY++ S T GL Y
Sbjct: 113 GLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT 169
Query: 1198 HADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPI 1257
+ G++ Q P+ T P ++ + W PP + +
Sbjct: 170 LINGGESAPTTLTQ-----------QTAVPPPTDLRFTNIGPDTMRVTWAPPPSI---DL 215
Query: 1258 TGYYVEKRE-RGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
T + V + E + + ++ + +L G +Y V ++ E P +
Sbjct: 216 TNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR-- 273
Query: 1317 VQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDAN 1375
QK D P IT +S T+ W P+ A I GY ++ + +
Sbjct: 274 -----QKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPRED 324
Query: 1376 SVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
VP T+ NL+ G EY ++A+N S
Sbjct: 325 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL 359
Score = 173 bits (440), Expect = 4e-47
Identities = 63/391 (16%), Positives = 123/391 (31%), Gaps = 41/391 (10%)
Query: 1225 PPDAPSQPEVTGY-SPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANN--YPTTN 1281
P P+ + ++++W ITGY + G+ +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQ 58
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS 1341
+ T +L G +Y V + + P T + IT S
Sbjct: 59 SSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-------IIPEVPQLTDLSFVDITDSS 111
Query: 1342 VTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVI 1400
+ L W P + I GY + G G + + V +TV L G +Y VI
Sbjct: 112 IGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168
Query: 1401 AVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF- 1459
+ G S P + + D+ ++ V + P
Sbjct: 169 TLINGGESAPTTLTQQT-----------AVPPPTDLRFTNIGPDTMRVTWAP-PPSIDLT 216
Query: 1460 -WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK--NPAGFDTATLHVR 1516
+ S + + + ++ + ++V+ N G +Y + + ++ L R
Sbjct: 217 NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLP--GTEYVVSVSSVYEQH-ESTPLRGR 273
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VT 1575
P + + +S T++W PR + IT Y + + + + +
Sbjct: 274 QKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHS 329
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ + NL G+ Y ++A N S
Sbjct: 330 RNSITLTNLTPGTEYVVSIVALNGREESPLL 360
Score = 154 bits (391), Expect = 1e-40
Identities = 64/434 (14%), Positives = 101/434 (23%), Gaps = 128/434 (29%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
GY I T+G V T L G Y V S PI+
Sbjct: 33 TGYRITTTP-TNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 91
Query: 960 EPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYS 1019
+ +
Sbjct: 92 II-------------------------------------------PEVPQLTDLSFVDIT 108
Query: 1020 PSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 1079
SS+ L W P + S I Y +
Sbjct: 109 DSSIGLRWTPLNS---------------------------------------STIIGYRI 129
Query: 1080 EKYESATGFWSKLSSFVRS-PAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKF 1138
+ G S Y V GLE Y V G S P L
Sbjct: 130 TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQ----- 184
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR---------------S 1183
T PP + + + + W P + + V + S
Sbjct: 185 --TAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPS 239
Query: 1184 TRTATDCGLG----YQ-QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYS 1238
L Y + V + L+ + D+P+ + + +
Sbjct: 240 DNAVVLTNLLPGTEYVVSVSS-VYEQHESTPLRGRQKT--------GLDSPTGIDFSDIT 290
Query: 1239 PSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNFTVHDLREGGKYEF 1297
+S ++ W P ITGY + E R + P + + T+ +L G +Y
Sbjct: 291 ANSFTVHWIAPRA----TITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVV 346
Query: 1298 RVIAINEAGPGKPS 1311
++A+N
Sbjct: 347 SIVALNGREESPLL 360
Score = 153 bits (387), Expect = 4e-40
Identities = 48/256 (18%), Positives = 84/256 (32%), Gaps = 22/256 (8%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
Y I + G V ++TV GL G Y + T G S P
Sbjct: 125 IGYRITVVAAGEGIPIFEDFVDS--SVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT 182
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGM--T 541
PP L +N+ ++ +++W P + ++++ +
Sbjct: 183 QQTAVPPPTD-LRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISP 238
Query: 542 VSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGE 601
+ L+ EY+ V +V ES L + T D+P D
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-------LDSPTGIDFSDITA 291
Query: 602 DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFR 661
+ + W P + IT Y I+ + VP ++ + + +LT G EY
Sbjct: 292 NSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 347
Query: 662 VIAVNEAGPSEPSDAS 677
++A+N S
Sbjct: 348 IVALNGREESPLLIGQ 363
Score = 151 bits (383), Expect = 1e-39
Identities = 60/333 (18%), Positives = 100/333 (30%), Gaps = 63/333 (18%)
Query: 1142 VP-DPPGQPQIV-DWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHA 1199
+P PP + + DT T+ W+R I GY++ T +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQG---NSLEEVV 54
Query: 1200 DVGQTPHGWWLQDSRIQG---------RIQSPFD-------------PPDAPSQPEVTGY 1237
Q+ + + D +
Sbjct: 55 HADQSSC-------TFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDI 107
Query: 1238 SPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNLNFTVHDLREGGKYE 1296
+ SS+ L W P + I GY + G G + + ++ +TV L G Y+
Sbjct: 108 TDSSIGLRWTPLNSS---TIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYD 164
Query: 1297 FRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGAR 1356
VI + G P+ T Q+ PP + I D++ ++W PP
Sbjct: 165 ISVITLINGGESAPTTLT-------QQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SID 214
Query: 1357 IKGYIVQKR-KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSG 1415
+ ++V+ K + V S+ + + NL G EY V +V E S P +
Sbjct: 215 LTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHV 1448
L I S V
Sbjct: 275 KT-----------GLDSPTGIDFSDITANSFTV 296
Score = 150 bits (380), Expect = 3e-39
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 18/255 (7%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKE--FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF 484
+ Y I ++ + T L+ G +Y + T S P+
Sbjct: 33 TGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 92
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS- 543
+ L ++T S L W + I+ Y I + G S
Sbjct: 93 IPEVPQLTD-LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSS 148
Query: 544 -LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGED 602
+Y V L +Y V + + GES T+ T P + G D
Sbjct: 149 VGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA-------VPPPTDLRFTNIGPD 201
Query: 603 FVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRV 662
+ + W PP + +T+++++ N + L + + V + +L G EY V
Sbjct: 202 TMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 258
Query: 663 IAVNEAGPSEPSDAS 677
+V E S P
Sbjct: 259 SSVYEQHESTPLRGR 273
Score = 141 bits (358), Expect = 3e-36
Identities = 65/375 (17%), Positives = 112/375 (29%), Gaps = 60/375 (16%)
Query: 1326 PDPPEAPKVDRIT-KDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVP--NP 1382
PP ++ +T+SW I GY + G ++ V
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGE 1442
T NLS G EY V V + S P+ P P + D++
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESV------PISDTIIPEVP-----QLTDLSFVDIT 108
Query: 1443 DFSIHVPFMAFPQPAAFWFA--NDSII---------DDSDTRVHKQLTMNSASLVVKNSQ 1491
D SI + W + +II + + + V +
Sbjct: 109 DSSIGL----------RWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLE 158
Query: 1492 RSDGGQYRLQLK--NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGG 1549
G Y + + G ++A + PP +L D++ + W PP
Sbjct: 159 P--GIDYDISVITLINGG-ESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---S 212
Query: 1550 SEITNYVVEKKDYNSTVWTKVSSYVTTP-FVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
++TN++V + S + V + NL G+ Y V + + S P
Sbjct: 213 IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 272
Query: 1609 IDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWI 1668
+P D T +S ++ W PR + I Y +
Sbjct: 273 -------RQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRP 321
Query: 1669 KASMAHIPDTSLKYT 1683
+ +P + T
Sbjct: 322 REDR--VPHSRNSIT 334
Score = 123 bits (310), Expect = 6e-30
Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 16/191 (8%)
Query: 76 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA- 134
P L +IT SS L W + I+ Y + + G + V +
Sbjct: 97 PQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT 153
Query: 135 -ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 193
L G DY+ V + GES P + +T + P T+ G D + +
Sbjct: 154 VTGLEPGIDYDISVITLINGGESAP----TTLTQQTA---VPPPTDLRFTNIGPDTMRVT 206
Query: 194 WTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK 252
W PP ++ +++ P + + A + +L G EY V +V +
Sbjct: 207 WAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 263
Query: 253 GGPGEPSKASA 263
P +
Sbjct: 264 QHESTPLRGRQ 274
Score = 120 bits (303), Expect = 5e-29
Identities = 62/416 (14%), Positives = 117/416 (28%), Gaps = 91/416 (21%)
Query: 190 VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC--IVPANITATSVPDLKEGEEYEFRV 247
+ + W I+ Y I P G + +V A+ ++ + +L G EY V
Sbjct: 20 LTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSV 76
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP---- 303
V S P++ P L D+ ++ +++ P
Sbjct: 77 YTVKDDKE------SVPISDTIIPEVP----QLTDLSFVDITDSSIGLRW--TPLNSSTI 124
Query: 304 ---EVTWTI--DGKELKTDSVRTTVTSIGYHTIVN-TVNTKRSDSGTYHLELRNTSGRDE 357
+T +G + D V ++V +T+ Y + + E
Sbjct: 125 IGYRITVVAAGEGIPIFEDFVDSSVGY---YTVTGLEPGI------DYDISVITLINGGE 175
Query: 358 GSFTVTVLET---------ISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSL 408
+ T +T + T+ + W
Sbjct: 176 SAPTTLTQQTAVPPPTDLRFTNIGPDTM--------------------RVT--WA----- 208
Query: 409 HPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFR 467
P + +++ + + P + + L G +YV
Sbjct: 209 -----------PPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVS 257
Query: 468 IRTENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEK 527
+ + S PL P G ++ S++T S + W P A I Y I
Sbjct: 258 VSSVYEQHESTPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRH 312
Query: 528 MDISRGTWSDAGM--TVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
+ L EY+ + A+N ES L ++TV+
Sbjct: 313 HPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVS 368
Score = 120 bits (302), Expect = 5e-29
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 18/193 (9%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
PP L+ +NI + + W P D+ +++V ++ V +S +
Sbjct: 187 VPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNA 242
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD 191
NL+ G +Y V +V + ES PL T D P +D +
Sbjct: 243 VVLTNLLPGTEYVVSVSSVYEQHESTPLRG-RQKTG------LDSPTGIDFSDITANSFT 295
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAV 250
+ W P+ + I+ Y I P++ + VP + + ++ +L G EY ++A+
Sbjct: 296 VHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVAL 351
Query: 251 NKGGPGEPSKASA 263
N
Sbjct: 352 NGREESPLLIGQQ 364
Score = 114 bits (286), Expect = 8e-27
Identities = 36/191 (18%), Positives = 52/191 (27%), Gaps = 17/191 (8%)
Query: 488 PSPPEGPLEVSNVTKESC-KLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS--- 543
P P L + +SW I Y I + + V
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQ 58
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF 603
L EY V V ES + T E + D +
Sbjct: 59 SSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP-------EVPQLTDLSFVDITDSS 111
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVI 663
+ L W P S I Y I G + V ++ + L G +Y+ VI
Sbjct: 112 IGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168
Query: 664 AVNEAGPSEPS 674
+ G S P+
Sbjct: 169 TLINGGESAPT 179
Score = 111 bits (279), Expect = 6e-26
Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 17/200 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYT 132
SPP +N + W DI Y + + + + V +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 190
+NL G +YN V V ES+P+ S + + + D +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTIIPE----VPQLTDLSFVDITDSSI 112
Query: 191 DLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 249
L WTP S I Y I G V +++ +V L+ G +Y+ VI
Sbjct: 113 GLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT 169
Query: 250 VNKGGPGEPSKASAPVTCKP 269
+ GG P+ + P
Sbjct: 170 LINGGESAPTTLTQQTAVPP 189
Score = 77.5 bits (191), Expect = 1e-14
Identities = 41/300 (13%), Positives = 84/300 (28%), Gaps = 70/300 (23%)
Query: 588 PDAPEKPTVKDWGE-DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA-LEVPANKT 645
P ++ + + ++W+ IT Y I + V A+++
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKI 705
+L+ G EY V V + S I P L D+
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKE------SVPISDTIIPEVP----QLTDLSFVDITD 109
Query: 706 LNVEIQFIGEPPP-------EVTWTI--DGKELKTDSVRTTVTSIGYHTIVN-TVNTKRS 755
++ +++ P +T +G + D V ++V +T+
Sbjct: 110 SSIGLRW--TPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY---YTVTGLEPGI--- 161
Query: 756 DSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPD 815
Y + + E + T +
Sbjct: 162 ---DYDISVITLINGGESAPT------------------------------TLTQQTAVP 188
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR-KKGGDWVDANSVPVPNPVHTL 874
PP + I D++ ++W PP + ++V+ K + V S+ + L
Sbjct: 189 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 245
Score = 77.5 bits (191), Expect = 1e-14
Identities = 30/248 (12%), Positives = 58/248 (23%), Gaps = 93/248 (37%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
+++ V ++ +SP D+ + LL GT Y V + Q S P+ +
Sbjct: 216 TNFLVRYSP-VKNEEDVAELS-ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 273
Query: 960 EPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYS 1019
+ D+P+ + + +
Sbjct: 274 QKT-------------------------------------------GLDSPTGIDFSDIT 290
Query: 1020 PSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 1079
+S ++ W P + IT Y +
Sbjct: 291 ANSFTVHWIAPR----------------------------------------ATITGYRI 310
Query: 1080 EKYESATGFWSKLSSF-VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKF 1138
+ + + + L +Y + A N S L S
Sbjct: 311 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS----- 365
Query: 1139 PFTVPDPP 1146
TV
Sbjct: 366 --TVSAHH 371
Score = 48.3 bits (115), Expect = 2e-05
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 872
D P IT +S T+ W P+ A I GY ++ + + VP
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSI 333
Query: 873 TL 874
TL
Sbjct: 334 TL 335
Score = 41.3 bits (97), Expect = 0.003
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 429 YIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP 485
Y I VP + T+ LT G +YV I N S L
Sbjct: 308 YRIRHHPEHFSGRPREDRVPH--SRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Query: 486 DKPSPP 491
+
Sbjct: 366 TVSAHH 371
Score = 39.8 bits (93), Expect = 0.009
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 1875 VLAYVLDV--AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
++ Y + V A + + Y V L G DY+ V G S P++ ++
Sbjct: 124 IIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 183
Query: 1933 ERPKFP 1938
+ P
Sbjct: 184 QTAVPP 189
Score = 38.3 bits (89), Expect = 0.025
Identities = 6/49 (12%), Positives = 13/49 (26%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ + + + +L G +Y + A N S
Sbjct: 315 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 363
Score = 38.3 bits (89), Expect = 0.029
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 1872 AVGVLAYVLDV--AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
++ + +++ ++ D ++ +LL G +Y V + S P
Sbjct: 212 SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 271
Query: 1930 TS 1931
Sbjct: 272 GR 273
Score = 33.6 bits (77), Expect = 0.66
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 1883 AEDTNWRVANDYLVKDPT-YIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ + D + +L G +Y V S P S
Sbjct: 42 TNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISD 90
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7; 2.60A
{Homo sapiens}
Length = 396
Score = 211 bits (539), Expect = 6e-60
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 15/212 (7%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDIMNQL 1742
S+ + + + +G GA V R R +KTG++FA K L ++ +E +++ +L
Sbjct: 5 STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64
Query: 1743 HHPKLINLHDAFEDD--DEMVLIFEFLSGGELFERITAP--DYKMSEAEVINYMRQVCEA 1798
+H ++ L E+ VLI EF G L+ + P Y + E+E + +R V
Sbjct: 65 NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTR--NSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+ H+ E I+H ++KP NIM + K+ DFG A +L+ +E GT E+ P
Sbjct: 125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHP 184
Query: 1857 EIVEREPVGF-----YT---DMWAVGVLAYVL 1880
++ ER + Y D+W++GV Y
Sbjct: 185 DMYERAVLRKDHQKKYGATVDLWSIGVTFYHA 216
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 209 bits (535), Expect = 2e-59
Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 13/216 (6%)
Query: 1673 AHIPDTSLKYTSSVYDHYDIL-EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL 1731
H+ +++ D Y + + +G G G V + ++T FA K + +
Sbjct: 46 FHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPK 100
Query: 1732 IRKEIDIMNQL-HHPKLINLHDAFED----DDEMVLIFEFLSGGELFERITA-PDYKMSE 1785
R+E+++ + P ++ + D +E+ ++++ E L GGELF RI D +E
Sbjct: 101 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTE 160
Query: 1786 AEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRN-STNVKMIDFGLATKLDPNEVV 1844
E M+ + EA++++H NI H DVKPEN++ ++ + +K+ DFG A + + +
Sbjct: 161 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 220
Query: 1845 KISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
T + APE++ E DMW++GV+ Y+L
Sbjct: 221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL 256
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 200 bits (509), Expect = 2e-58
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 9/196 (4%)
Query: 1221 SPFDPPDAPSQP--EVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRA--- 1274
+P D PS P + S+ + ++ P GG PI Y E R G E W
Sbjct: 1 APLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 1275 NNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV 1334
+ T+ L+ Y R+ A+N G G+ S ++ + R+P P+
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK--TQPVREPSAPKLEGQ 118
Query: 1335 DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEE 1394
+S+ ++ DGG+ I+ Y+V+ R +W +P + + +L E
Sbjct: 119 MGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAE 177
Query: 1395 YTFRVIAVNEAGNSEP 1410
Y V+A N+ G S+
Sbjct: 178 YEVYVVAENQQGKSKA 193
Score = 187 bits (477), Expect = 4e-54
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 479 PLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDA 538
PL D PS P ++ + ++ + P GG PIL Y E + W
Sbjct: 2 PLAQ--ADTPSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK 57
Query: 539 GMTVS-----LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEK 593
+ L Y R+ A+N G + + EP AP+
Sbjct: 58 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA--SEFKTQPVREPSAPKL 115
Query: 594 PTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLT 653
+ + + +DGGSPI Y+++ + + W + +P+ V + L
Sbjct: 116 EGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLD 173
Query: 654 KGQEYEFRVIAVNEAGPSEPSDASD 678
EYE V+A N+ G S+ +
Sbjct: 174 WNAEYEVYVVAENQQGKSKAAHFVF 198
Score = 183 bits (467), Expect = 1e-52
Identities = 39/202 (19%), Positives = 60/202 (29%), Gaps = 10/202 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-----VS 128
PS P S+ +++ P GG IL Y E + W
Sbjct: 9 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 66
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 188
L Y R+ A+N G T P P P +
Sbjct: 67 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAPKLEGQMGEDGN 124
Query: 189 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 248
+ + DGGSPI Y++ + W+ +P+ + L EYE V+
Sbjct: 125 SIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVV 183
Query: 249 AVNKGGPGEPSKASAPVTCKPR 270
A N+ G + +
Sbjct: 184 AENQQGKSKAAHFVFRTAAAHH 205
Score = 153 bits (389), Expect = 3e-42
Identities = 43/210 (20%), Positives = 61/210 (29%), Gaps = 34/210 (16%)
Query: 1139 PFTVPDPPGQPQIVDWDTNN--ATLMWDRPRTDGGSKIQGYKVEFR-------------- 1182
P D P P I + + A + +D P GG I YK E+R
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 1183 ------STRTATD--CGLGYQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQ 1231
T Y G G S + P P AP
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGL---GEISAASEFK---TQPVREPSAPKL 115
Query: 1232 PEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLRE 1291
G +S+ + + G PI Y V R EW P+ + + + L
Sbjct: 116 EGQMGEDGNSIKVNLIKQDDGGS-PIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDW 174
Query: 1292 GGKYEFRVIAINEAGPGKPSKPTDIVQCKE 1321
+YE V+A N+ G K +
Sbjct: 175 NAEYEVYVVAENQQGKSKAAHFVFRTAAAH 204
Score = 143 bits (362), Expect = 1e-38
Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 9/170 (5%)
Query: 1516 RVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVT 1575
D P P + ++ + + + P GG I Y E + VW
Sbjct: 4 AQADTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 1576 TP----FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVD 1631
V + L +TY R+ A N GL + + + P P AP +
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF--KTQPVREPSAPKLEGQMG 120
Query: 1632 STEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLK 1681
+SI + K DGGSPI+ Y+V R +S + W +
Sbjct: 121 EDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVM 168
Score = 142 bits (360), Expect = 2e-38
Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 1037 PIT--DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
P+ D PS P + + + + P GG PI Y E W
Sbjct: 2 PLAQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY 59
Query: 1095 FVRSPA----YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
+ + + GL+ Y R+ A N G+ E S P P P
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA--ASEFKTQPVREPSAPKLEG 117
Query: 1151 IVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ D N+ + + DGGS I+ Y V +R+ +
Sbjct: 118 QMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSS 152
Score = 129 bits (327), Expect = 6e-34
Identities = 51/328 (15%), Positives = 78/328 (23%), Gaps = 130/328 (39%)
Query: 812 RKPDPPEAPKVDR--ITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPN 869
+ D P +P +D+ + + + P+ GG I Y + R G + +
Sbjct: 4 AQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 63
Query: 870 PVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHA 929
E I L
Sbjct: 64 ASM--------------------------EGIVTIV--GLK------------------- 76
Query: 930 TVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHL 989
TTY R+ A N +GL E E
Sbjct: 77 ------PETTYAVRLAALNGKGLGEISAASE----------------------------- 101
Query: 990 PQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPL 1049
P P AP G +S+ +
Sbjct: 102 ---------FKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ------------------- 133
Query: 1050 DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETN 1109
DDGGSPI +Y+V ++ + ++ S + L+ N
Sbjct: 134 ------------------DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWN 175
Query: 1110 RQYRFRVRAENQYGVSEPLELDNSITAK 1137
+Y V AENQ G S+ A
Sbjct: 176 AEYEVYVVAENQQGKSKAAHFVFRTAAA 203
Score = 113 bits (285), Expect = 2e-28
Identities = 35/164 (21%), Positives = 51/164 (31%), Gaps = 10/164 (6%)
Query: 429 YIIEMAEYGLDNWK----TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL- 483
Y E G + W + T+ GL Y R+ N G E
Sbjct: 42 YKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 101
Query: 484 ---FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGM 540
P + S K++ DDGG+PI HY++ +S + +
Sbjct: 102 FKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRL 160
Query: 541 TV-SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARN 583
S + L EY V A N G+S T A +
Sbjct: 161 PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAH 204
Score = 104 bits (260), Expect = 5e-25
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 585 FDEPDAPEKPTVK--DWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA---LE 639
+ D P P++ + + + P GG PI Y + + G W + +
Sbjct: 3 LAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 640 VPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ + V I L Y R+ A+N G E S AS+
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 103
Score = 96.8 bits (241), Expect = 2e-22
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 170 PFGRPDRPGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKA---C 223
P + D P P+ + +++ P+ GG PI +Y E + W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 224 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTP 279
+ ++ LK Y R+ A+N G GE S AS +P K
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKLE 116
Score = 86.4 bits (214), Expect = 6e-19
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 1497 QYRLQLKNPAGF----DTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEI 1552
RL N G + + + P P+ G+S+ + D+GGS I
Sbjct: 82 AVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPI 140
Query: 1553 TNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPI 1612
+Y+V + +S ++ + V +++L + YE V+AENQ G SK A +
Sbjct: 141 RHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 200
Query: 1613 KAKHP 1617
A H
Sbjct: 201 AAAHH 205
Score = 67.1 bits (164), Expect = 3e-12
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 1617 PFDVPGAPGAPKG--VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKAS-MA 1673
P P +P V+ + + + +P GG PI +Y E R + ++ W A
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 1674 HIPDTSLKYT 1683
T
Sbjct: 62 KEASMEGIVT 71
Score = 59.1 bits (143), Expect = 2e-09
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y++ R L W P + H + L YE V AEN QG S+
Sbjct: 142 HYLVRYRAL--SSEWKP-EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
Query: 961 PVVAKN 966
A +
Sbjct: 199 RTAAAH 204
Score = 55.2 bits (133), Expect = 3e-08
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 1875 VLAYVLDV-AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y++ A + W+ ++ SL +YE V A+N G SK +
Sbjct: 140 IRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 197
Score = 51.7 bits (124), Expect = 5e-07
Identities = 9/64 (14%), Positives = 20/64 (31%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKP 488
Y++ + + + +K L +Y + EN G S+ +F
Sbjct: 143 YLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 202
Query: 489 SPPE 492
+
Sbjct: 203 AHHH 206
Score = 47.1 bits (112), Expect = 2e-05
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1875 VLAYVLDVAED-----TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+L Y + + + + L Y R+ A N G + S+
Sbjct: 39 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
Query: 1930 TSK 1932
S+
Sbjct: 99 ASE 101
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 197 bits (502), Expect = 3e-56
Identities = 75/274 (27%), Positives = 123/274 (44%), Gaps = 16/274 (5%)
Query: 1366 KKGGDWVDANS-----VPVPNPVHT--VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVI 1418
+ G + A+ H + ++++ + ++V A N+ G+ + +
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG---TASLE 95
Query: 1419 VEEQP--NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHK 1476
VE + P L G+ + GE SI +PF P P W +ID++
Sbjct: 96 VEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 1477 QLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDS 1536
++ + +R D G Y + KN G D T+ + V D P PP + + + DS
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDS 214
Query: 1537 LTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMA 1596
+ L WT P +GGS+ITNY+VEK + W +V T + V NL ++Y+FRV+A
Sbjct: 215 VNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYT-VINLFGKTSYQFRVIA 273
Query: 1597 ENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGV 1630
EN++GLSKP+ +P K A + V
Sbjct: 274 ENKFGLSKPSEPSEPTITKED--KTRAMNYDEEV 305
Score = 147 bits (373), Expect = 6e-39
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 39/336 (11%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYH 329
+AP K L+++ ++ + + G P P V W GKE+ D ++ + GYH
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFEREL 389
++ + D+ Y + N G G+ ++ V T+ ++ E+
Sbjct: 63 QLIIA-SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 390 LNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCP 449
+++ +P PV+ + I Y + +
Sbjct: 122 VSIKIP--------FSGKPDPVITWQKGQDLIDN--NGHYQVIVTRSFTS---------- 161
Query: 450 KEFFTVKGLTEGKKYVFRIRTENMYG---ASEPLDPLFPDKPSPPEGPLEVSNVTKESCK 506
G+ + + +N +G + LD D P PP G +VS+V+++S
Sbjct: 162 --LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA--DVPDPPRGV-KVSDVSRDSVN 216
Query: 507 LSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNS 566
L+W P DGG+ I +YI+EK + W G Y V L + Y FRV A N
Sbjct: 217 LTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENK 276
Query: 567 IGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGED 602
G S E ++ T+ + +K ++ E+
Sbjct: 277 FGLSKPSEPSEPTITK--------EDKTRAMNYDEE 304
Score = 146 bits (370), Expect = 2e-38
Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 35/220 (15%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I +T ++V A N+ G + AS + + PK + + G+++++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 768
+I F G+P P +TW + + + + + ++V +R D+G Y + +N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 769 GRDEGSFT-IVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITK 827
G D+ + V D PDPP KV +++
Sbjct: 185 GIDQKTVELDVAD--------------------------------VPDPPRGVKVSDVSR 212
Query: 828 DSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVP 866
DSV L+W P DGG++I YIV+K W+
Sbjct: 213 DSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR 252
Score = 140 bits (355), Expect = 2e-36
Identities = 55/277 (19%), Positives = 102/277 (36%), Gaps = 50/277 (18%)
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNV 293
+ + + + ++V A N+GG AS V + PK + + G+++++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 294 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 353
+I F G+P P +TW + + + + + ++V +R D+G Y + +N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 354 GRDEGSFTVTVLE--------TISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMK 405
G D+ + + V + +S + +++ L W
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVN--------------------LT--WTEP 222
Query: 406 KSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYV 465
S I + YI+E + W V G + +TV L Y
Sbjct: 223 ASD--------GGSKI-----TNYIVEKCATTAERWLRV-GQARETRYTVINLFGKTSYQ 268
Query: 466 FRIRTENMYGASEPLDPLFP-----DKPSPPEGPLEV 497
FR+ EN +G S+P +P P DK EV
Sbjct: 269 FRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 123 bits (311), Expect = 8e-31
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
+ D P PP+G VSD++ +S +L+W P DGGS ITNY+VEK + W ++ R
Sbjct: 195 VADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ-AR 252
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
Y V L Y+FRV AEN++G+S+P E K +
Sbjct: 253 ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKED--KTRAMNYDE 303
Score = 122 bits (307), Expect = 3e-30
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPV 1383
PDPP KV +++DSV L+W P DGG++I YIV+K W+
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ--ARETR 255
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
+TV NL Y FRVIA N+ G S+P + S P I +E + +
Sbjct: 256 YTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Score = 121 bits (304), Expect = 8e-30
Identities = 44/113 (38%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNL 1282
D PD P +V+ S SV+L W PA+ GG IT Y VEK WLR T
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARET-- 254
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVD 1335
+TV +L Y+FRVIA N+ G KPS+P++ KE D A D
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE-----DKTRAMNYD 302
Score = 121 bits (304), Expect = 8e-30
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 558 LFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGS 617
+ V A N G T + VA D PD P V D D V+L W P +DGGS
Sbjct: 175 FYVVCAKNRFGIDQK--TVELDVA----DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGS 228
Query: 618 PITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
IT+YI++K W+ + + V +L Y+FRVIA N+ G S+PS+ S
Sbjct: 229 KITNYIVEKCATTAERWLRVGQARETRYTVI--NLFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 678 DIIM 681
+ +
Sbjct: 287 EPTI 290
Score = 117 bits (295), Expect = 1e-28
Identities = 50/265 (18%), Positives = 97/265 (36%), Gaps = 40/265 (15%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH-KQLTMNSASLVVKNSQR 1492
R++ V+ + ++ P+P W+ I + ++ L++ +
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPH--------PPENLHADE---------FAGD 1535
D Y+++ N G + T + V +HA F+G
Sbjct: 72 DDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 1536 -SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+ W G I N + + T+ + + + + V
Sbjct: 132 PDPVITWQ----KGQDLIDN-----NGHYQVIVTRSFTSLVF----PNGVERKDAGFYVV 178
Query: 1595 MAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQR 1654
A+N++G+ + + +D DVP P K D + DS++L W++P DGGS I
Sbjct: 179 CAKNRFGIDQKTVELDVA------DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITN 232
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTS 1679
YIVEK + ++W++ +T
Sbjct: 233 YIVEKCATTAERWLRV--GQARETR 255
Score = 112 bits (282), Expect = 7e-27
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P PP G K S++++ S NL W P DGG+ I +Y+VEK RW+ +G T
Sbjct: 199 PDPPRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYT 257
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 174
NL Y FRV A NK G S P P K+ R
Sbjct: 258 VINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298
Score = 110 bits (277), Expect = 3e-26
Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 27/196 (13%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS--VKFMKRYAGDDYT 2150
AP F + ++ + C+V P + W+ +E+ ++ + G +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY------- 2203
+I +D Y +RA N G L V+ IH
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVE---VPAKIHLPKTLEGMGAVHALRGE 120
Query: 2204 --------------DVIWLHNNKEIKPSNDFAYSSVAHVH-TLKIAEIFPEDSGVYTCEA 2248
+ W I + + + + +D+G Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 2249 FNDEGESFSSCTLLVQ 2264
N G + L V
Sbjct: 181 KNRFGIDQKTVELDVA 196
Score = 109 bits (274), Expect = 7e-26
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 112 EKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 171
+ +D V + + + + V A N+ G + D
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID---QKTVELDVADV- 198
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANIT 230
PD P V+D +D V+L WT P DGGS I+ YI+EK W + T
Sbjct: 199 --PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARE--T 254
Query: 231 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+V +L Y+FRVIA NK G +PS+ S P K
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Score = 100 bits (252), Expect = 6e-23
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 37/207 (17%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
AP F + ++ + C+V P + W+ +E+ G Y
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD--------GLKYRIQ 55
Query: 2070 SS---LRKLQIDRFSIQDT---------SFDRRQA-------------APRFVIKPQSAF 2104
+L I + D P+ + +
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 2105 CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAGDDYTFVINRTKMEDRGE 2163
G+ V P +TW + + + + N + +D G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 2164 YIIRAENHYGYREEVVFLNVQRKYDLP 2190
Y++ A+N +G ++ V L+V D+P
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA---DVP 199
Score = 66.7 bits (163), Expect = 2e-11
Identities = 23/143 (16%), Positives = 36/143 (25%), Gaps = 40/143 (27%)
Query: 2204 DVIWLHNNKEIKPSND--FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
V W KEI H L IA + +D+ VY A N G + +L
Sbjct: 35 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 2262 LVQ--------------------------------------VSWYKDGNPVSDDPATYQF 2283
V+ ++W K + + ++
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 2284 TQIGQTYKMKILSTTLDDVGQYS 2306
T + D G Y
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYV 177
Score = 62.5 bits (152), Expect = 4e-10
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----- 955
Y++EK T W+ V + TV L T+Y+FRV AEN GLS+P
Sbjct: 232 NYIVEKCATT-AERWLR-VGQAR--ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287
Query: 956 -ITTKEPVVAKNQYGKEL 972
TKE Y +E+
Sbjct: 288 PTITKEDKTRAMNYDEEV 305
Score = 59.8 bits (145), Expect = 3e-09
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYH 744
+AP K L+++ ++ + + G P P V W GKE+ D ++ + GYH
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGS 774
++ + D+ Y + N G G+
Sbjct: 63 QLIIA-SVTDDDATVYQVRATNQGGSVSGT 91
Score = 55.9 bits (135), Expect = 6e-08
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 1113 RFRVRAENQYGVSEPLELDNSITAKFPFTV---PDPPGQPQIVDWDTNNATLMWDRPRTD 1169
+ V A+N++G V PDPP ++ D ++ L W P +D
Sbjct: 175 FYVVCAKNRFG---------IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASD 225
Query: 1170 GGSKIQGYKVEFRSTRTAT 1188
GGSKI Y VE +T
Sbjct: 226 GGSKITNYIVEKCATTAER 244
Score = 52.1 bits (125), Expect = 1e-06
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 1875 VLAYVLDVAE--DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+ Y+++ W ++ Y V +L Y+FRV A+N G SKPS S+
Sbjct: 230 ITNYIVEKCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 193 bits (492), Expect = 5e-56
Identities = 45/214 (21%), Positives = 71/214 (33%), Gaps = 18/214 (8%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRAN-------- 1275
P+ P VT S SV L W P N G PI + V+ R G W N
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 1276 ---NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRK--PDPPE 1330
+ + +V DL+ Y FR++A+ K S + + PE
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 1331 APKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANSVPVPNPVHTVGN 1388
+++ ++ +V L W I GY R G++ A +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 1389 LSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ 1422
L Y F++ + + A SE +
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 188 bits (480), Expect = 2e-54
Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 18/214 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD------- 126
PP P + ++ S L W PR+DG ++ V +M + W D
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 127 ----VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPIT--AKDPFGRPDRPG 178
G A +L H Y FR+ AV ++ + P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 179 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKACIVPANITATSVPD 236
+ ++ + V L W+ I+ Y +P G + KA I A+ + +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 237 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
L+ YEF++ + + E S T +P+
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 186 bits (473), Expect = 2e-53
Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 17/214 (7%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV----- 542
PP P V+ ++ ES L W VP +DG ++ + +M R W +
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 543 --------SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTK--TTVARNEFDEPDAPE 592
S V L + Y FR+ AV S ++ T+ D PE
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 593 KPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKG-NPYWMNALEVPANKTDVKIPD 651
++++ E V L W + IT Y + + A A+ KI
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 652 LTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
L YEF++ + + A SE S + +
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 146 bits (369), Expect = 2e-39
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 35/214 (16%)
Query: 1143 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRS-------TRTATDCGLGYQ 1195
PP P + + L W PR + G I +KV++R T + G
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 1196 QCHADVGQTPH------------------------GWWLQDS-RIQGRIQSPFDPPDAPS 1230
+ ++++G++ S + + + DP P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 1231 QPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRANNYPTTNLNFTVHD 1288
E+ YS ++V L W+ ++ ITGYY R GE+ +A +F +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 1289 LREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQ 1322
L YEF++ + + A + S + +
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 146 bits (369), Expect = 2e-39
Identities = 55/328 (16%), Positives = 86/328 (26%), Gaps = 121/328 (36%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANSVPVPNPV 871
PP P V R++ +SV L W P++DG I + VQ R G +W N
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTN-------- 52
Query: 872 HTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATV 931
+ P N A+V
Sbjct: 53 --------------------------------------DNIPYGKPKWNSELGKSFTASV 74
Query: 932 PRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQ 991
L TY FR+ A ++ T
Sbjct: 75 TDLKPQHTYRFRILAVYSNNDNKESNTSAKFY---------------------------- 106
Query: 992 IVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDV 1051
+ + DP P E+ YS ++V L
Sbjct: 107 ------LQPGAALDPMPVPELLEIEEYSETAVVL-------------------------- 134
Query: 1052 SDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT-GFWSKLS-SFVRSPAYDVFGLETN 1109
W D IT Y S++ G + K + + ++ + LET
Sbjct: 135 ----------HWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETA 184
Query: 1110 RQYRFRVRAENQYGVSEPLELDNSITAK 1137
Y F++++ + SE L T +
Sbjct: 185 TMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 142 bits (359), Expect = 4e-38
Identities = 29/162 (17%), Positives = 49/162 (30%), Gaps = 15/162 (9%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
PP P +V+ ++ ES L W P +DG + V + W + +
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 1101 -----------YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSIT--AKFPFTVPDPPG 1147
V L+ YRFR+ A ++ P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 1148 QPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+I ++ L W I GY +R + +A +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGE 162
Score = 139 bits (352), Expect = 3e-37
Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV------ 1574
+PP + + +S+ L W PR++G + V + W + +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 1575 ------TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPI--KAKHPFDVPGAPGA 1626
+ V +L TY FR++A +K + T + D P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 1627 PKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLI-SDDKWIKASMAHIPDTSLKYT 1683
+ + +E ++ L WS I Y R S ++ KA++ S K
Sbjct: 122 LEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIA 179
Score = 105 bits (264), Expect = 2e-25
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 29/190 (15%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLD-NWKTVPGFCPKEF------------FTVKGLTEGKK 463
+ LPI + ++ G NW+T P +V L
Sbjct: 28 DGLPI-----VIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT 82
Query: 464 YVFRIRTENMYGASEPLDP-----LFPDKPSPPEGP---LEVSNVTKESCKLSWRVPVDD 515
Y FRI ++ + L P P LE+ ++ + L W + D
Sbjct: 83 YRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDA 142
Query: 516 GGAPILHYIIEKMDI-SRGTWSDAGMTVS--LFYDVPRLIHRKEYLFRVKAVNSIGESDT 572
I Y S G + A + + + + L Y F++++ ++ S+
Sbjct: 143 DEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEF 202
Query: 573 LETTKTTVAR 582
+ R
Sbjct: 203 SALKQGRTQR 212
Score = 105 bits (263), Expect = 3e-25
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 16/136 (11%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDAN-------- 1375
PP P V R++ +SV L W P++DG I + VQ R G +W N
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 1376 ---SVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSG 1432
S + +V +L Y FR++AV +++ S ++ M
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM--PV 118
Query: 1433 VRDITVKAGEDFSIHV 1448
+ ++ + ++ +
Sbjct: 119 PELLEIEEYSETAVVL 134
Score = 83.3 bits (206), Expect = 1e-17
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV-WTK--VSSYVTTP 1577
PE L +E++ ++ L+W+ D IT Y + +S + K +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 175
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 1615
F + L + YEF++ + + S+ + +
Sbjct: 176 FK-IAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 50.6 bits (121), Expect = 1e-06
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK---ERPK 1936
+ A ++ + L YEF++++ +AA S+ S+ + +RPK
Sbjct: 160 AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 47.1 bits (112), Expect = 2e-05
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 1887 NWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
N L K T V L H Y FR+ A + +K S+TS
Sbjct: 58 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSA 103
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 205 bits (523), Expect = 3e-55
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 10/207 (4%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQL 1742
+ +++ E +GTG FG V R + TG A K + + +E EI IM +L
Sbjct: 10 TQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL 69
Query: 1743 HHPKLINLHDAFED------DDEMVLIFEFLSGGELFERITAPD--YKMSEAEVINYMRQ 1794
+HP +++ + + +D +L E+ GG+L + + + + E + +
Sbjct: 70 NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD 129
Query: 1795 VCEAVKHMHEKNIIHLDVKPENIMCQTR-NSTNVKMIDFGLATKLDPNEVVKISTGTAEF 1853
+ A++++HE IIH D+KPENI+ Q K+ID G A +LD E+ GT ++
Sbjct: 130 ISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQY 189
Query: 1854 AAPEIVEREPVGFYTDMWAVGVLAYVL 1880
APE++E++ D W+ G LA+
Sbjct: 190 LAPELLEQKKYTVTVDYWSFGTLAFEC 216
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 189 bits (481), Expect = 1e-53
Identities = 53/318 (16%), Positives = 98/318 (30%), Gaps = 61/318 (19%)
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGY 1177
A + + S + F P + + + W P ++ GY
Sbjct: 2 AHHHHHHSSG------LEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51
Query: 1178 KVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQG---------RIQS------- 1221
+V ++ + + + G + +
Sbjct: 52 RVRVTPKEKTGP----MKEINLAPDSSSV-------VVSGLMVATKYEVSVYALKDTLTS 100
Query: 1222 --------PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLR 1273
+ P + VT + ++++++W ITG+ V+ G+
Sbjct: 101 RPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTE----TITGFQVDAVPANGQTPI 156
Query: 1274 ANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPK 1333
++T+ L+ G Y+ + +N+ P D P +
Sbjct: 157 QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID-------ASTAIDAPSNLR 209
Query: 1334 VDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHTVGNLSEG 1392
T +S+ +SW+PP ARI GYI++ K G T+ L G
Sbjct: 210 FLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPG 265
Query: 1393 EEYTFRVIAVNEAGNSEP 1410
EYT VIA+ SEP
Sbjct: 266 TEYTIYVIALKNNQKSEP 283
Score = 173 bits (440), Expect = 5e-48
Identities = 56/298 (18%), Positives = 84/298 (28%), Gaps = 53/298 (17%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-V 1096
P L + +TP S S W PP +T Y V K +
Sbjct: 16 FQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAP 71
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDT 1156
S + V GL +Y V A S P + PP + ++ D
Sbjct: 72 DSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-----GVVTTLENVSPPRRARVTDATE 126
Query: 1157 NNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQ 1216
T+ W I G++V+ G Q + I
Sbjct: 127 TTITISWRTKT----ETITGFQVDAVPAN-----GQTPIQRTIKPDVRSY-------TIT 170
Query: 1217 G---------RIQ-------------SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGG 1254
G + DAPS +P+S+ ++W PP
Sbjct: 171 GLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPP----R 226
Query: 1255 RPITGYYVEKRERGGE-WLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
ITGY ++ + G T+ L G +Y VIA+ +P
Sbjct: 227 ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 172 bits (437), Expect = 1e-47
Identities = 50/255 (19%), Positives = 85/255 (33%), Gaps = 20/255 (7%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPLDPL-- 483
+ Y + + P V GL KY + S P +
Sbjct: 49 TGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVT 108
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
+ SPP V++ T+ + +SWR I + ++ + + T +
Sbjct: 109 TLENVSPPRR-ARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQRTIKPD 163
Query: 544 -LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGED 602
Y + L +Y + +N S + +T DAP +
Sbjct: 164 VRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTA-------IDAPSNLRFLATTPN 216
Query: 603 FVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRV 662
+ ++W+PP + IT YII+ ++ G+P T+ I L G EY V
Sbjct: 217 SLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYV 272
Query: 663 IAVNEAGPSEPSDAS 677
IA+ SEP
Sbjct: 273 IALKNNQKSEPLIGR 287
Score = 148 bits (374), Expect = 3e-39
Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 16/206 (7%)
Query: 471 ENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI 530
+ + S L+ LF P L+ + VT S W P + Y +
Sbjct: 3 HHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPK 58
Query: 531 SRGTWSDAGMTV--SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEP 588
+ S V L+ +Y V A+ S + TT +
Sbjct: 59 EKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTT-----LENV 113
Query: 589 DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK 648
P + V D E + ++W+ IT + + + + +
Sbjct: 114 SPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPI-QRTIKPDVRSYT 168
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPS 674
I L G +Y+ + +N+ S P
Sbjct: 169 ITGLQPGTDYKIYLYTLNDNARSSPV 194
Score = 143 bits (362), Expect = 1e-37
Identities = 57/320 (17%), Positives = 105/320 (32%), Gaps = 49/320 (15%)
Query: 1300 IAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKG 1359
+A + S +++ Q P K ++T S++ W PP ++ G
Sbjct: 1 MAHHH---HHHSSGLEVLF---QGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTG 50
Query: 1360 YIVQKRKKGGD-WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVI 1418
Y V+ K + ++ + V L +Y V A+ + S P + V+
Sbjct: 51 YRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRP---AQGVV 107
Query: 1419 VEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID---------D 1469
+ P V D T + +I + W I +
Sbjct: 108 TTLENVSPPRRAR-VTDAT-----ETTITI----------SWRTKTETITGFQVDAVPAN 151
Query: 1470 SDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQL--KNPAGFDTATLHVRVLDRPHPPENL 1527
T + + + + S + Q G Y++ L N ++ + + P NL
Sbjct: 152 GQTPIQRTIKPDVRSYTITGLQP--GTDYKIYLYTLNDNA-RSSPVVIDASTAIDAPSNL 208
Query: 1528 HADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFVRVRNLAI 1586
+SL + W PPR + IT Y+++ + S V + L
Sbjct: 209 RFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEP 264
Query: 1587 GSTYEFRVMAENQYGLSKPA 1606
G+ Y V+A S+P
Sbjct: 265 GTEYTIYVIALKNNQKSEPL 284
Score = 141 bits (358), Expect = 3e-37
Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 15/192 (7%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P LK + +T +S + +W P + Y V E + +++ +
Sbjct: 20 AIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAPDSSS 75
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD 191
L+ Y V A+ S P P + VTD + +
Sbjct: 76 VVVSGLMVATKYEVSVYALKDTLTSRPAQ-----GVVTTLENVSPPRRARVTDATETTIT 130
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN 251
+ W I+ + ++ P G + ++ + ++ L+ G +Y+ + +N
Sbjct: 131 ISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLN 186
Query: 252 KGGPGEPSKASA 263
P A
Sbjct: 187 DNARSSPVVIDA 198
Score = 134 bits (339), Expect = 1e-34
Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 20/193 (10%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
SPP + ++ T+++ + WR + I + V+ + + +
Sbjct: 113 VSPPRR-ARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQR-TIKPDVRS 166
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD 191
L G DY + +N S P I A D P + +
Sbjct: 167 YTITGLQPGTDYKIYLYTLNDNARSSP----VVIDASTA---IDAPSNLRFLATTPNSLL 219
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV 250
+ W PP + I+ YII+ + P E +T ++ L+ G EY VIA+
Sbjct: 220 VSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIAL 275
Query: 251 NKGGPGEPSKASA 263
EP
Sbjct: 276 KNNQKSEPLIGRK 288
Score = 116 bits (291), Expect = 3e-28
Identities = 37/284 (13%), Positives = 73/284 (25%), Gaps = 94/284 (33%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY + +++P V L+ T YE V A S P
Sbjct: 50 GYRVRVTP--KEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 107
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
+ + P + VT +
Sbjct: 108 -----------------------------------------TTLENVSPPRRARVTDATE 126
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
++++++W IT + V+
Sbjct: 127 TTITISWRTKT----------------------------------------ETITGFQVD 146
Query: 1081 KYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1140
+ + + +Y + GL+ Y+ + N S P+ +D
Sbjct: 147 AVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID-------AS 199
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
T D P + + N+ + W PR ++I GY +++
Sbjct: 200 TAIDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKP 239
Score = 108 bits (271), Expect = 1e-25
Identities = 52/366 (14%), Positives = 93/366 (25%), Gaps = 131/366 (35%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDA 862
+ + P K ++T S++ W PP ++ GY V+ K +
Sbjct: 11 GLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKE 66
Query: 863 NSVPVPNPVHTL--LSIG--Y-----------LSQFLAEEKKHGKLLLA----KVEN--- 900
++ + + L + Y S+ + + +V +
Sbjct: 67 INLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATE 126
Query: 901 ---------------GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVR 945
G+ ++ G P + P T+ L GT Y+ +
Sbjct: 127 TTITISWRTKTETITGFQVDAVPA---NGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLY 183
Query: 946 AENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFD 1005
N S P+
Sbjct: 184 TLNDNARSSPVVID-------------------------------------------AST 200
Query: 1006 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKP 1065
DAPS +P+S+ ++W PP
Sbjct: 201 AIDAPSNLRFLATTPNSLLVSWQPP----------------------------------- 225
Query: 1066 PLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA--YDVFGLETNRQYRFRVRAENQYG 1123
+ IT Y+++ YE ++ R + GLE +Y V A
Sbjct: 226 -----RARITGYIIK-YEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQ 279
Query: 1124 VSEPLE 1129
SEPL
Sbjct: 280 KSEPLI 285
Score = 104 bits (262), Expect = 2e-24
Identities = 40/295 (13%), Positives = 83/295 (28%), Gaps = 50/295 (16%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
+A + +S + V+ + + D+ S+
Sbjct: 1 MAHHHHHHSSGLE----VLFQGPA------IPAPTDLKFTQVTPTSLSAQ---------- 40
Query: 1460 WFANDSII----------DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK--NPAG 1507
W + + + + L +S+S+VV +Y + +
Sbjct: 41 WTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMV--ATKYEVSVYALKDTL 98
Query: 1508 F-DTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV 1566
A V L+ PP + ++T+ W + IT + V+ N
Sbjct: 99 TSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQT 154
Query: 1567 WTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGA 1626
+ + + L G+ Y+ + N S P + AP
Sbjct: 155 PIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI-------DASTAIDAPSN 207
Query: 1627 PKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLK 1681
+ + +T +S+ + W PR + I YI++ T
Sbjct: 208 LRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEAT 258
Score = 98.3 bits (245), Expect = 3e-22
Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 7/155 (4%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
+ + ++ +T+ GL G Y + T N S P+
Sbjct: 141 TGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDAST 200
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS--L 544
P L T S +SW+ P A I YII+
Sbjct: 201 AIDAPSN-LRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVT 255
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ L EY V A+ + +S+ L K T
Sbjct: 256 EATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKT 290
Score = 94.1 bits (234), Expect = 1e-20
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 10/115 (8%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
A + S LE A AP + W PP +T Y
Sbjct: 2 AHHHHHHSSGLEVLFQGPA------IPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51
Query: 623 IIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
++ K M + + + + V + L +YE V A+ + S P+
Sbjct: 52 RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106
Score = 84.1 bits (208), Expect = 2e-17
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 11/122 (9%)
Query: 149 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 208
A + S L A P T + +WTPP ++ Y
Sbjct: 2 AHHHHHHSSGLEVLFQGPAIPA------PTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51
Query: 209 IIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 267
+ PK K + + ++ V L +YE V A+ P++
Sbjct: 52 RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111
Query: 268 KP 269
Sbjct: 112 NV 113
Score = 52.9 bits (127), Expect = 5e-07
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
GY+I+ G V P AT+ L GT Y V A SEP+ +
Sbjct: 231 GYIIKYEK--PGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Score = 42.9 bits (101), Expect = 8e-04
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 1875 VLAYVLDV--AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y++ V + L G +Y V A S+P
Sbjct: 229 ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Score = 41.3 bits (97), Expect = 0.003
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 1875 VLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ + +D + + +Y + L G DY+ + N S P
Sbjct: 140 ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID 197
Score = 40.9 bits (96), Expect = 0.003
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1875 VLAYVLDV--AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y + V E T + + +V L+ YE V A S+P+
Sbjct: 48 LTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 189 bits (483), Expect = 5e-53
Identities = 56/195 (28%), Positives = 110/195 (56%), Gaps = 6/195 (3%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHP 1745
+ Y L++IG G+FG + + G + K I +S + E+E R+E+ ++ + HP
Sbjct: 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERIT-APDYKMSEAEVINYMRQVCEAVKHMHE 1804
++ ++FE++ + ++ ++ GG+LF+RI E +++++ Q+C A+KH+H+
Sbjct: 84 NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD 143
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIS-TGTAEFAAPEIVEREP 1863
+ I+H D+K +NI V++ DFG+A L+ + + GT + +PEI E +P
Sbjct: 144 RKILHRDIKSQNIF--LTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKP 201
Query: 1864 VGFYTDMWAVGVLAY 1878
+D+WA+G + Y
Sbjct: 202 YNNKSDIWALGCVLY 216
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 183 bits (466), Expect = 1e-52
Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 11/201 (5%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRANNYPTTN 1281
D P+AP +T + + W ++ PI Y ++ W A
Sbjct: 4 DVPNAPKLTGITCQA-DKAEIHWEQQGDNRS-PILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS 1341
+ V + Y FRVIA N+ G PS +D + P+ ++
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD-VPFKNPDNVVGQGTEPNN 120
Query: 1342 VTLSWRP-PKHDGGARIKGYIVQKRKKGG--DWVDANSVPVPNPVHTVGNLSEGEEYTFR 1398
+ +SW P P+ + A Y V ++ W + N + + +Y +
Sbjct: 121 LVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIK 180
Query: 1399 VIAVNEAGNSEPGKQSGPVIV 1419
V+A+N+ G S + +V
Sbjct: 181 VVAINDRGESNV---AAEEVV 198
Score = 154 bits (391), Expect = 2e-42
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 9/200 (4%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE-KMDISRGTWSDAGMTVS- 543
D P+ P+ + ++ W D +PILHY I+ + +W A V
Sbjct: 4 DVPNAPKLT--GITCQADKAEIHWE-QQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 544 -LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGED 602
V ++ Y FRV A N IG S + + + P+ + +
Sbjct: 61 TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGTEPN 119
Query: 603 FVDLAWKP-PLNDGGSPITDYIIQ-KKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEF 660
+ ++W P P + +P Y + K++ W N + ++ I D +Y
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLI 179
Query: 661 RVIAVNEAGPSEPSDASDII 680
+V+A+N+ G S + +
Sbjct: 180 KVVAINDRGESNVAAEEVVG 199
Score = 147 bits (374), Expect = 3e-40
Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 12/193 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSGTYT 132
P+ P+ + W D + ILHY ++ W +
Sbjct: 6 PNAPKLTG--ITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 133 RAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDH 189
+ + +Y FRV A NKIG S P T + P + P ++
Sbjct: 63 SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VPFKNPDNVVGQGTEPNN 120
Query: 190 VDLEWTPPKK-DGGSPISQYIIEKKPKYGP--WEKACIVPANITATSVPDLKEGEEYEFR 246
+ + WTP + + +P Y + K WE I + D +Y +
Sbjct: 121 LVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIK 180
Query: 247 VIAVNKGGPGEPS 259
V+A+N G +
Sbjct: 181 VVAINDRGESNVA 193
Score = 132 bits (333), Expect = 7e-35
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 7/171 (4%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE-KKDYNSTVWTKVSSYVT 1575
V D P+ P+ A D ++W D S I +Y ++ + W V
Sbjct: 2 VQDVPNAPKLTGITCQA-DKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 1576 -TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTE 1634
T V ++ + Y FRV+A N+ G S P+ D + P P G +
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGTEP 118
Query: 1635 DSISLVWSK-PRHDGGSPIQRYIVE-KRLISDDKWIKASMAHIPDTSLKYT 1683
+++ + W+ P + +P Y V KR I W ++ ++
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIA 169
Score = 122 bits (307), Expect = 3e-31
Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 7/153 (4%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSFV-R 1097
D P+ P+ + + W+ D SPI +Y ++ W V
Sbjct: 4 DVPNAPKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTN 1157
+ + V + Y FRV A N+ G S P +S T + P P + N
Sbjct: 61 TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGTEPN 119
Query: 1158 NATLMWDR-PRTDGGSKIQGYKVEFRSTRTATD 1189
N + W P + + Y V ++ A
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAA 152
Score = 118 bits (297), Expect = 6e-30
Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 43/213 (20%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADV 1201
VP+ P I A + W++ D S I Y ++F ++ T + + V
Sbjct: 5 VPNAPKLTGITCQADK-AEIHWEQQ-GDNRSPILHYTIQFNTSFTPAS----WDAAYEKV 58
Query: 1202 GQTPHGWWLQDSRIQG---------RIQ-------------------SPFDPPDAPSQPE 1233
T S + R+ P P P
Sbjct: 59 PNT------DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVV 112
Query: 1234 VTGYSPSSVSLAWNP-PANHGGRPITGYYVEKRERGG--EWLRANNYPTTNLNFTVHDLR 1290
G P+++ ++W P P P YYV + W N + N + D
Sbjct: 113 GQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQP 172
Query: 1291 EGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQK 1323
KY +V+AIN+ G + + E +
Sbjct: 173 TFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205
Score = 107 bits (270), Expect = 2e-26
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPY-WMNALEVPANK 644
D P+AP+ + D ++ W+ D SPI Y IQ P W A E N
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 645 TDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGK 704
+ ++ Y FRVIA N+ G S PS SD + P +++ + +
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VP--FKNPDNVVGQGTE 117
Query: 705 ILNVEIQFIGEPPPEVTW 722
N+ I + P PE+
Sbjct: 118 PNNLVISW--TPMPEIEH 133
Score = 107 bits (270), Expect = 2e-26
Identities = 44/319 (13%), Positives = 67/319 (21%), Gaps = 135/319 (42%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANSVPVPNP 870
P+ P+ + D + W D + I Y +Q W A
Sbjct: 5 VPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 871 VHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHAT 930
V +SP+
Sbjct: 63 SSF---------------------------------------------VVQMSPW----- 72
Query: 931 VPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLP 990
Y FRV A N G S P + +
Sbjct: 73 -------ANYTFRVIAFNKIGASPPSAHSDSCTTQ------------------------- 100
Query: 991 QIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLD 1050
P P P G P+++ ++W P
Sbjct: 101 ------------PDVPFKNPDNVVGQGTEPNNLVISWTP--------------------- 127
Query: 1051 VSDITPESCSLSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSF-VRSPAYDVFGLET 1108
P + +P +Y V K + W + F R + T
Sbjct: 128 --------------MPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPT 173
Query: 1109 NRQYRFRVRAENQYGVSEP 1127
+Y +V A N G S
Sbjct: 174 FVKYLIKVVAINDRGESNV 192
Score = 105 bits (265), Expect = 1e-25
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANSVPVPNP 1382
P+ P+ + D + W D + I Y +Q W A
Sbjct: 5 VPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ-PNKPVMDLSG 1432
V +S YTFRVIA N+ G S P S + P K ++ G
Sbjct: 63 SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVG 113
Score = 104 bits (262), Expect = 3e-25
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANI 229
P+ P +T D ++ W D SPI Y I+ + P W+ A N
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 230 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGK 289
++ V + Y FRVIA NK G PS S T +P P +++ + +
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VP--FKNPDNVVGQGTE 117
Query: 290 ILNVEIQFIGEPPPEVTW 307
N+ I + P PE+
Sbjct: 118 PNNLVISW--TPMPEIEH 133
Score = 101 bits (253), Expect = 5e-24
Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 16/166 (9%)
Query: 417 NHLPIMEAVKSRYIIEMAE-YGLDNWKTVPGFCPK-EFFTVKGLTEGKKYVFRIRTENMY 474
N PI Y I+ + +W P + V ++ Y FR+ N
Sbjct: 31 NRSPI-----LHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKI 85
Query: 475 GASEPLDP-----LFPDKPSPPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIE-K 527
GAS P PD P + + +SW +P + AP HY + K
Sbjct: 86 GASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWK 145
Query: 528 MDISRGTWSDAGMTV--SLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
DI W + + + +YL +V A+N GES+
Sbjct: 146 RDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESN 191
Score = 67.4 bits (165), Expect = 2e-12
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTP-PRDNGGSEITNYVVE-KKDYNSTVWTKVSSY-VTTP 1577
P+N+ ++L + WTP P + +Y V K+D + W + +
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 164
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
+ + + Y +V+A N G S A
Sbjct: 165 NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 196
Score = 60.1 bits (146), Expect = 6e-10
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVVE-KMDMETGRWVPM--GDVS 128
+P + ++ + W P + HY V K D+ W D
Sbjct: 103 VPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWR 162
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 158
+ Y +V A+N GES
Sbjct: 163 QNNIVIADQPTFVKYLIKVVAINDRGESNV 192
Score = 54.3 bits (131), Expect = 5e-08
Identities = 16/152 (10%), Positives = 29/152 (19%), Gaps = 56/152 (36%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P+ +++ +SW P
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEH------------------------------- 133
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+ Y + + W N ++ +
Sbjct: 134 ----------------NAPNF------HYYVSWKRDIPAAAWEN-NNIFDWRQNNIVIAD 170
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
Y +V A N +G S E VV
Sbjct: 171 QPTFVKYLIKVVAINDRGESNV--AAEEVVGY 200
Score = 51.6 bits (124), Expect = 5e-07
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 1875 VLAYVL---DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+L Y + +W A + + + V + +Y FRV A N G S PS+ S
Sbjct: 35 ILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHS 94
Query: 1932 K 1932
Sbjct: 95 D 95
Score = 44.7 bits (106), Expect = 1e-04
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
W N + + ++ Y +V A N G S ++
Sbjct: 150 AAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEE 196
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 186 bits (475), Expect = 2e-52
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 1684 SSVY-DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL 1742
S Y ++ + +G GAFG V + R +A K I + + I E+ ++ L
Sbjct: 1 SLRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASL 59
Query: 1743 HHPKLINLHDAFEDDDEMV-------------LIFEFLSGGELFERITAPDYKMSEAEVI 1789
+H ++ + A+ + V + E+ G L++ I + + E
Sbjct: 60 NHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW 119
Query: 1790 NYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST- 1848
RQ+ EA+ ++H + IIH D+KP NI + NVK+ DFGLA + + +
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFI-DESR-NVKIGDFGLAKNVHRSLDILKLDS 177
Query: 1849 --------------GTAEFAAPEIVEREPV-GFYTDMWAVGVLAYVL 1880
GTA + A E+++ DM+++G++ + +
Sbjct: 178 QNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEM 224
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18,
PSI, structural genomics, protein structure initiative;
HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 185 bits (472), Expect = 2e-52
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 8/198 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLH 1743
+ + + +G G+F V+R TG A K I + + + E+ I QL
Sbjct: 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQN-EVKIHCQLK 69
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
HP ++ L++ FED + + L+ E GE+ + SE E ++M Q+ + ++H
Sbjct: 70 HPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH 129
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PNEVVKISTGTAEFAAPEIVERE 1862
I+H D+ N++ N+K+ DFGLAT+L P+E GT + +PEI R
Sbjct: 130 SHGILHRDLTLSNLLLTRNM--NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRS 187
Query: 1863 PVGFYTDMWAVGVLAYVL 1880
G +D+W++G + Y L
Sbjct: 188 AHGLESDVWSLGCMFYTL 205
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 184 bits (470), Expect = 5e-52
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 1749
+ +E IG+G FG V + + R G + K + E +E+ + +L H +++
Sbjct: 13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV----KYNNEKAEREVKALAKLDHVNIVH 68
Query: 1750 LHDAFEDDDEMV----------------LIFEFLSGGELFERI-TAPDYKMSEAEVINYM 1792
+ ++ D + EF G L + I K+ + +
Sbjct: 69 YNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELF 128
Query: 1793 RQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAE 1852
Q+ + V ++H K +I+ D+KP NI VK+ DFGL T L + S GT
Sbjct: 129 EQITKGVDYIHSKKLINRDLKPSNIFLVDTK--QVKIGDFGLVTSLKNDGKRTRSKGTLR 186
Query: 1853 FAAPEIVEREPVGFYTDMWAVGVLAY 1878
+ +PE + + G D++A+G++
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILA 212
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 184 bits (470), Expect = 7e-52
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 34/215 (15%)
Query: 1674 HIPDTSLKYTSSVYDHYDIL-EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI 1732
H+ +++ D Y + + +G G G V + ++T FA K + +
Sbjct: 3 HVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPKA 57
Query: 1733 RKEIDIMNQL-HHPKLINLHDAFED----DDEMVLIFEFLSGGELFERITA-PDYKMSEA 1786
R+E+++ + P ++ + D +E+ ++++ E L GGELF RI D +E
Sbjct: 58 RREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTER 117
Query: 1787 EVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRN-STNVKMIDFGLATKLDPNEVVK 1845
E M+ + EA++++H NI H DVKPEN++ ++ + +K+ DFG
Sbjct: 118 EASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF----------- 166
Query: 1846 ISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
A E E DMW++GV+ Y+L
Sbjct: 167 ---------AKE-TTGEKYDKSCDMWSLGVIMYIL 191
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 195 bits (496), Expect = 8e-52
Identities = 71/526 (13%), Positives = 132/526 (25%), Gaps = 98/526 (18%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANN-- 1276
P + T + + W+ N Y V++R G ++
Sbjct: 154 TLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISI-EPVIYVVQRRWNYGIHPSEDDAT 212
Query: 1277 -----YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
TT+ + D+R Y+FRV A+N G + P+ + + P P
Sbjct: 213 HWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPAN 272
Query: 1332 PKVDRITKD-----SVTLSWRPPKHDGGARIKGYIVQKRKKGGD-------WVDANSVPV 1379
++ T + +VT+ W P+ + Y V +
Sbjct: 273 LRLANSTVNSDGSVTVTIVWDLPEEPDIP-VHHYKVFWSWMVSSKSLVPTKKKRRKTTDG 331
Query: 1380 PNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMD-LSGVRDITV 1438
+ L +Y + A+ G + + + L R +
Sbjct: 332 FQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGI 391
Query: 1439 KAGEDFSIHVPFMAFPQPAAF--------------------------WFANDSIIDDSDT 1472
+ F P A F WF + +
Sbjct: 392 QTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTG 451
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLK--NPAG--------FDTATLHVRVLDRPH 1522
+ +++++ +Y++ ++ P F T
Sbjct: 452 SEASSGMTHENYIILQDLS--FSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHK 509
Query: 1523 P-----------------PENLHADEFAGD---SLTLYWTPPRDNGGSEITNYVVE---- 1558
P PENL A D + W + N +T + V
Sbjct: 510 PIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEV 569
Query: 1559 --KKDYNSTVWTKVSSYVTTP----FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPI 1612
+ NS + +S P + V NL + Y V G
Sbjct: 570 TTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT----IK 625
Query: 1613 KAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1658
+ P P + + G PI ++
Sbjct: 626 TFRTPELPPSSAHRSHLKHRHPHH----YKPSPERYGKPIPNPLLG 667
Score = 185 bits (470), Expect = 2e-48
Identities = 77/619 (12%), Positives = 147/619 (23%), Gaps = 149/619 (24%)
Query: 472 NMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE----- 526
+ L+ P P L + + ++ W + + Y+++
Sbjct: 144 GCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISI-EPVIYVVQRRWNY 202
Query: 527 ---KMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARN 583
+ W T + + + Y FRV AVN G +K +
Sbjct: 203 GIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSK 262
Query: 584 EFDEPDAPEKPTVKDW-----GEDFVDLAWKPPLNDGGSPITDYII------QKKEKGNP 632
+ P AP + + G V + W P P+ Y + K
Sbjct: 263 DPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPT 321
Query: 633 YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAP--- 689
+ V + L +Y + A+ G + A +
Sbjct: 322 KKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKE 381
Query: 690 --------KIKTPLKDIIIKAGKILNVEIQFI--GEPPPEVTWT---------------- 723
I+T L + + L V F G+ +V W
Sbjct: 382 QLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFP 441
Query: 724 --IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDH 781
+ +T Y + + S S Y + ++ + V
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDL-----SFSCKYKVTVQPIRPKSHSKAEAVFFT 496
Query: 782 LKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDG 841
K H + C G ++ V + KP+ A + + + SW+ K +
Sbjct: 497 TPPCSALKGKSHKPIGCLGEAGHVLSKVLA-KPENLSASFIVQDVNITGHFSWKMAKANL 555
Query: 842 GARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENG 901
+ G+ V + + +
Sbjct: 556 YQPMTGFQVTWAEVTTESRQNSLPN----------------------------------- 580
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEP 961
+ + + TVP L T Y V+ G
Sbjct: 581 ------------SIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI---- 624
Query: 962 VVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPS 1021
++P PP + + + P
Sbjct: 625 ------------------------------------KTFRTPELPPSSAHRSHLKHRHPH 648
Query: 1022 SVSLAWNPPANHGGRPITD 1040
+ P G+PI +
Sbjct: 649 H----YKPSPERYGKPIPN 663
Score = 184 bits (467), Expect = 3e-48
Identities = 67/493 (13%), Positives = 123/493 (24%), Gaps = 108/493 (21%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE--------KYESATGFW 1089
P P+ L +++ + W + YVV+ E W
Sbjct: 156 YKGVPLKPRKELRFTELQSGQLEVKWSSK-FNISIEPVIYVVQRRWNYGIHPSEDDATHW 214
Query: 1090 SKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
++ + + +R Y+FRV A N +G + + P P
Sbjct: 215 QTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANL 273
Query: 1150 QIVDWDTNNA-----TLMWDRPRTDGGSKIQGYKVEFR---------------------S 1183
++ + N+ T++WD P + + YKV +
Sbjct: 274 RLANSTVNSDGSVTVTIVWDLPE-EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGF 332
Query: 1184 TRTATDCGLG----YQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTG 1236
+ L Y Q GQT + ++
Sbjct: 333 QNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQ 392
Query: 1237 YSPS----------------------SVSLAWNPPANHGGRPITGYYVEKRERGGE---- 1270
V + W + + Y+V
Sbjct: 393 TQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDP---TVNRYHVRWFPEACAHNRT 449
Query: 1271 -WLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS---------------KPT 1314
A++ T + DL KY+ V I K
Sbjct: 450 TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHK 509
Query: 1315 DIVQCKE----QKRKPDPPEAPKVDRITKD---SVTLSWRPPKHDGGARIKGYIVQKRKK 1367
I E + PE I +D + SW+ K + + G+ V +
Sbjct: 510 PIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEV 569
Query: 1368 GGDW----------VDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSG-- 1415
+ + +P + V TV NL Y V + G ++
Sbjct: 570 TTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRT 629
Query: 1416 PVIVEEQPNKPVM 1428
P + ++ +
Sbjct: 630 PELPPSSAHRSHL 642
Score = 181 bits (460), Expect = 3e-47
Identities = 64/539 (11%), Positives = 140/539 (25%), Gaps = 95/539 (17%)
Query: 70 WLHIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--------KMDMETGRW 121
+ +P P L+ + + ++W + + + + YVV+ + + W
Sbjct: 156 YKGVPLKPRKELRFTELQSGQLEVKWSSKFNISI-EPVIYVVQRRWNYGIHPSEDDATHW 214
Query: 122 VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 181
+ + + ++ Y FRV AVN G + P P
Sbjct: 215 QTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLR 274
Query: 182 VTDW-----GKDHVDLEWTPPKKDGGSPISQYIIEKKPK-------YGPWEKACIVPANI 229
+ + G V + W P++ P+ Y + ++
Sbjct: 275 LANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQ 333
Query: 230 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC-------------KPRFVAPKI 276
+ + L+ +Y + A+ G A + K R +
Sbjct: 334 NSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQT 393
Query: 277 KTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT------------------IDGKELKTDS 318
+ P + + G+ +V W
Sbjct: 394 QLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSE 453
Query: 319 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISS 378
+ +T Y + + S S Y + ++ + T + S
Sbjct: 454 ASSGMTHENYIILQDL-----SFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSH 508
Query: 379 KNMMYLFERELLNLIVPDHLKNL------WNMKKSLH----PVLHCRGNHLPIMEAVKSR 428
K + L E + V +NL ++ + H + +
Sbjct: 509 KPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPM-------TG 561
Query: 429 YIIEMAEYGLDNW------------KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGA 476
+ + AE ++ + +P TV L Y ++ G
Sbjct: 562 FQVTWAEVTTESRQNSLPNSIISQSQILPS--DHYVLTVPNLRPSTLYRLEVQVLTPGGE 619
Query: 477 SEPLDPLF--PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRG 533
F P+ P + + ++ + G PI + ++ G
Sbjct: 620 GPATIKTFRTPELPPSSAHRSHLKHRHPHH----YKPSPERYGKPIPNPLLGLDSTRTG 674
Score = 147 bits (370), Expect = 4e-36
Identities = 63/535 (11%), Positives = 144/535 (26%), Gaps = 89/535 (16%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 216
+ T+ ++++W+ P+ Y+++++ Y
Sbjct: 150 QVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSE 208
Query: 217 ---GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
W+ + + D++ Y+FRV AVN G + S A
Sbjct: 209 DDATHWQT--VAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSA 266
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPE---------VTWTIDGKE-----LKTDSV 319
P L+ +V + + + P E V W+ K
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRR 326
Query: 320 RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSK 379
+TT + Y +EL+ + + + + T ++K
Sbjct: 327 KTTDGFQNSVILEKLQPDC-----DYVVELQAITYWGQTRLKSAKVSLHFTS-THATNNK 380
Query: 380 NMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHL-----PIMEAVKSRYIIEMA 434
+ + + +P + + P + + +RY +
Sbjct: 381 EQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWF 440
Query: 435 EYGLDNWKTVP-----GFCPKEFFTVKGLTEGKKYVFRIRTENMYGASE----------- 478
+ +T G + + ++ L+ KY ++ S+
Sbjct: 441 PEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPC 500
Query: 479 ---------------PLDPLFPDKPSPPEGP--LEVSNVTKESCKLSWRVPVDDGGAPIL 521
+ + PE + + SW++ + P+
Sbjct: 501 SALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMT 560
Query: 522 HYIIEKMDISRGTWSDAGMTV-----------SLFYDVPRLIHRKEYLFRVKAVNSIGES 570
+ + +++ + ++ VP L Y V+ + GE
Sbjct: 561 GFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEG 620
Query: 571 DTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQ 625
T T P + + +K +KP G PI + ++
Sbjct: 621 PATIKTFRT----PELPPSSAHRSHLKHR----HPHHYKPSPERYGKPIPNPLLG 667
Score = 142 bits (359), Expect = 1e-34
Identities = 80/661 (12%), Positives = 157/661 (23%), Gaps = 165/661 (24%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
N G + + T ++ + +++ W + Y
Sbjct: 141 CSNGCGHTCQVPKTLYKGV-----PLKPRKELRFTELQSGQLEVKWSSK-FNISIEPVIY 194
Query: 623 IIQ--------KKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
++Q E +W + V++ D+ + Y+FRV AVN G +
Sbjct: 195 VVQRRWNYGIHPSEDDATHWQTVAQTT--DERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252
Query: 675 DASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE---------VTWTID 725
S + AP L+ +V + + + P E V W+
Sbjct: 253 APSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWM 312
Query: 726 GKE-----LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPD 780
K +TT + Y +EL+ + +
Sbjct: 313 VSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDC-----DYVVELQAITYWGQTRLKSAKV 367
Query: 781 HLKNLWNTKK-SLHPVLHCRGNHLPIMEAVKSRKPDPPEAPK--VDRITKDSVTLSWRPP 837
L + ++ R + + R+P P + + V + W+
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 838 KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAK 897
+ + Y V+ +
Sbjct: 428 EDPT---VNRYHVRWFPEACA--------------------------------------- 445
Query: 898 VENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPIT 957
+ T G + H +++ + L Y+ V+ + S+
Sbjct: 446 ---------HNRTTGSEASSGMTH----ENYIILQDLSFSCKYKVTVQPIRPKSHSKAEA 492
Query: 958 TKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTG 1017
P + G
Sbjct: 493 VF-----------------------------------------------FTTPPCSALKG 505
Query: 1018 YSPSSVSLAWNPPANHGGRPITDKPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPIT 1075
S + G ++ + P+ + + SWK + P+T
Sbjct: 506 KSHKPI-----GCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMT 560
Query: 1076 NYVVEKYESATGFW------SKLSSFVRSPA----YDVFGLETNRQYRFRVRAENQYGVS 1125
+ V E T S +S P+ V L + YR V+ G
Sbjct: 561 GFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEG 620
Query: 1126 EPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTR 1185
T + P P + + + + G I + STR
Sbjct: 621 PA----TIKTFRTPELPPSSAHRSHL----KHRHPHHYKPSPERYGKPIPNPLLGLDSTR 672
Query: 1186 T 1186
T
Sbjct: 673 T 673
Score = 121 bits (303), Expect = 7e-28
Identities = 55/439 (12%), Positives = 111/439 (25%), Gaps = 78/439 (17%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR---------KKGGDWVDANS 1376
P + + + + + W + Y+VQ+R W
Sbjct: 161 LKPRKELRFTELQSGQLEVKWSSKF-NISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQ 219
Query: 1377 VPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLS-GVRD 1435
+ ++ Y FRV AVN G S + P+ P + + +
Sbjct: 220 TTDER--VQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN 277
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAA-------FWFANDSIIDDSDTRVHKQLTMNSASLVVK 1488
TV + ++ + + +P FW S T+ ++ T + V
Sbjct: 278 STVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVI 337
Query: 1489 NSQRSDGGQYRLQLK--NPAGF-----DTATLHVRVLDRPHPPENLHADEFAGDSLTLYW 1541
+ Y ++L+ G +LH + E L G L +
Sbjct: 338 LEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPF 397
Query: 1542 TPPR------------------------DNGGSEITNYVVEKK----DYNSTVWT-KVSS 1572
R + Y V +N T + S
Sbjct: 398 QRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSG 457
Query: 1573 YVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTI----------------DPIKAKH 1616
++ +++L+ Y+ V SK +
Sbjct: 458 MTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEA 517
Query: 1617 PFDVPGAPGAPKGV------DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKA 1670
+ P+ + + W + + P+ + V ++ + +
Sbjct: 518 GHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNS 577
Query: 1671 SMAHIPDTSLKYTSSVYDH 1689
I S S Y
Sbjct: 578 LPNSIISQSQILPSDHYVL 596
Score = 113 bits (284), Expect = 2e-25
Identities = 63/505 (12%), Positives = 133/505 (26%), Gaps = 115/505 (22%)
Query: 426 KSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL-- 483
+ Y I +E +W+TV E + + + Y FR+ N++G P
Sbjct: 199 RWNYGIHPSEDDATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKH 257
Query: 484 --FPDKPSPPEGP--LEVSNVTKE-----SCKLSWRVPVDDGGAPILHYIIE------KM 528
PS P P L ++N T + + W +P + P+ HY +
Sbjct: 258 FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSK 316
Query: 529 DISRGTWSDAGMTV--SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFD 586
+ T + +L +Y+ ++A+ G++ + +
Sbjct: 317 SLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA 376
Query: 587 EPDAPEKPTVK--------------------------DWGEDFVDLAWKPPLNDGGSPIT 620
+ + + G+ V + WK +
Sbjct: 377 TNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT---EDPTVN 433
Query: 621 DYIIQKKEKG----NPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
Y ++ + A ++ + + DL+ +Y+ V + S+
Sbjct: 434 RYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAV 493
Query: 677 S-----------------DIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 719
+ L+ + P + +N+ F +
Sbjct: 494 FFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKA 553
Query: 720 ----------VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSD---SGTYHLELRN 766
VTW E + +S+ ++ S + + S Y LE++
Sbjct: 554 NLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQV 613
Query: 767 TSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRIT 826
+ EG TI P +
Sbjct: 614 LTPGGEGPATIKT---------------------------FRTPELPPSSAHRSHLKHRH 646
Query: 827 KDSVTLSWRPPKHDGGARIKGYIVQ 851
++P G I ++
Sbjct: 647 PH----HYKPSPERYGKPIPNPLLG 667
Score = 111 bits (279), Expect = 6e-25
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 16/191 (8%)
Query: 1490 SQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGG 1549
G + + P + L E L + W+ +
Sbjct: 130 VDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNIS- 188
Query: 1550 SEITNYVVE--------KKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
E YVV+ + ++T W V+ T V++ ++ Y+FRV A N +G
Sbjct: 189 IEPVIYVVQRRWNYGIHPSEDDATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHG 247
Query: 1602 LSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTED-----SISLVWSKPRHDGGSPIQRYI 1656
++ P AP + +ST + ++++VW P P+ Y
Sbjct: 248 TRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYK 306
Query: 1657 VEKRLISDDKW 1667
V + K
Sbjct: 307 VFWSWMVSSKS 317
Score = 103 bits (256), Expect = 4e-22
Identities = 52/511 (10%), Positives = 103/511 (20%), Gaps = 162/511 (31%)
Query: 811 SRKPDPPEAP--------KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDA 862
S+ P P AP V+ +VT+ W P+ + Y V
Sbjct: 261 SKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIP-VHHYKVFWSWMVSSKSLV 319
Query: 863 NSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHV 922
+
Sbjct: 320 PTKKKR--------------------------------------------------RKTT 329
Query: 923 SPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLK 982
+ + + +L Y ++A G + + K +
Sbjct: 330 DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHF------------------ 371
Query: 983 EICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKP 1042
+ + Q T L +
Sbjct: 372 -------------------TSTHATNNKEQLVKTRKGGIQTQLPFQRRR---------PT 403
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA-----TGFWSKLSSFVR 1097
P + + WK D + Y V + A T S
Sbjct: 404 RPLEVGAPFYQDGQLQVKVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEASSGMTH 460
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVS--------------------EPLELDNSITAK 1137
+ L + +Y+ V+ S +P+
Sbjct: 461 ENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHV 520
Query: 1138 FPFTVPDPPGQPQIVDWDTNN--ATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQ 1195
+ P N W + + + G++V + T +
Sbjct: 521 LSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPN 580
Query: 1196 QCHAD--VGQTPHGWW----LQDS-----RIQGR------------IQSPFDPPDAPSQP 1232
+ + + H L+ S +Q ++P PP + +
Sbjct: 581 SIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRS 640
Query: 1233 EVTGYSPSSVSLAWNPPANHGGRPITGYYVE 1263
+ P + P G+PI +
Sbjct: 641 HLKHRHPHH----YKPSPERYGKPIPNPLLG 667
Score = 43.0 bits (100), Expect = 0.001
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 1878 YVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
Y + +ED D + + Y+FRV A N G ++ SK
Sbjct: 202 YGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHF 258
Score = 38.4 bits (88), Expect = 0.035
Identities = 10/83 (12%), Positives = 23/83 (27%)
Query: 1856 PEIVEREPVGFYTDMWAVGVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFR 1915
+ +P+ + WA + ++ + V +L Y
Sbjct: 551 AKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLE 610
Query: 1916 VKAKNAAGFSKPSSTSKERPKFP 1938
V+ G + + P+ P
Sbjct: 611 VQVLTPGGEGPATIKTFRTPELP 633
Score = 37.6 bits (86), Expect = 0.050
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
T + + I+ L DY ++A G ++ S
Sbjct: 320 PTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364
Score = 36.5 bits (83), Expect = 0.11
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERP 1935
T A+ + + I+ L Y+ V+ SK + P
Sbjct: 447 NRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTP 498
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 191 bits (487), Expect = 2e-51
Identities = 82/388 (21%), Positives = 129/388 (33%), Gaps = 85/388 (21%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
R+ P F K + G V F CR+ ++W+ + + LK + +
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157
Query: 2067 TFYSSLRKLQIDRFSIQDT--------------------SFDRRQAAPRFVIKPQSAFCY 2106
T LQI + + + P F +KP S
Sbjct: 158 T-------LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA 210
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G+S F C V A +TW +N+E++ + + T + + D G+Y
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVI--HYKNHRRAN---------------KYDVIWLH 2209
A N G L VQ P + R + V+W
Sbjct: 271 YASNVAGKDSCSAQLGVQEP---PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 327
Query: 2210 NNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ----- 2264
+ EI+ S+ F S V V L++ + EDSG YTCEA N G + SS +L V+
Sbjct: 328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Query: 2265 ----------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMKILS 2296
VSW+KD + Y+ + IL+
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILN 446
Query: 2297 TTLDDVGQY----SAQMGGIIAAFSLNV 2320
D+G+Y S +G S+ +
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITL 474
Score = 191 bits (487), Expect = 2e-51
Identities = 65/385 (16%), Positives = 124/385 (32%), Gaps = 82/385 (21%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
P F+ + G+ + C+V + W+ + +L+ + + ++ + +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS-- 62
Query: 2070 SSLRKLQIDRFSIQDT--------------------SFDRRQAAPRFVIKPQSAFCYEGQ 2109
L I++ D R+ P F K + G
Sbjct: 63 -----LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF 117
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
V F CR+ ++W+ + + LK + + T I +T G+Y A
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177
Query: 2170 NHYGYREEVVFLNVQRKYDLPVIHYKNHR-------------RANKY---DVIWLHNNKE 2213
N G L + P K + W +N+E
Sbjct: 178 NPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE 237
Query: 2214 IKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ--------- 2264
I+P ++ + V + TL + ++ D+G YTC A N G+ S L VQ
Sbjct: 238 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL 297
Query: 2265 -------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTL 2299
V WYKD + + ++ + + +++ + ++
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSV 356
Query: 2300 DDVGQY----SAQMGGIIAAFSLNV 2320
+D G Y G ++ SL V
Sbjct: 357 EDSGDYTCEAHNAAGSASSSTSLKV 381
Score = 190 bits (483), Expect = 7e-51
Identities = 65/386 (16%), Positives = 125/386 (32%), Gaps = 81/386 (20%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ P F +KP S G+S F C V A +TW +N+E++ + +
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 2067 TFYSSLRKLQIDRFSIQDT------------SFDRR-----QAAPRFVIKPQ-SAFCYEG 2108
T L + + + D Q PRF+ K + S +
Sbjct: 254 T-------LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQD 306
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
+ ++ C++ + W+ + E+++S KF + + +ED G+Y A
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Query: 2169 ENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD----------------VIWLHNNK 2212
N G L V+ PV K H V W + +
Sbjct: 367 HNAAGSASSSTSLKVKEP---PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ-------- 2264
E++ + S + ++ I + D G Y C+A ND G ++ ++
Sbjct: 424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK 483
Query: 2265 -------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTL 2299
V+W+KD + + + ++
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 2300 DDVGQYS--AQ--MGGIIAAFSLNVV 2321
+ G+Y+ + G +L+V+
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 79.1 bits (195), Expect = 9e-15
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++ A N G + +SA +T V P + + G+ + G P
Sbjct: 171 QYNCSASNPLGT---ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI 227
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
++TW D +E++ +T + + + + D+G Y N +G+D S +
Sbjct: 228 KITWAKDNREIRPGG-NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Query: 364 VLE 366
V E
Sbjct: 287 VQE 289
Score = 75.2 bits (185), Expect = 1e-13
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 13/150 (8%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
+Y A N G + S + + E P + + GE +
Sbjct: 171 QYN--CSASNPLGTASS---SAKLTLSEHEVPPFF-DLKPVSVDLALGESGTFKCHVTGT 224
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
W ++ I L N+A+L V + D GQY N AG D+ +
Sbjct: 225 APIKITWAKDNREIRPGG-NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 1514 HVRVLDRPH----PPENLHADEFAGDSLTL 1539
+ V + P + + +
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQ--DEHTRY 311
Score = 74.8 bits (184), Expect = 2e-13
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
E++ A N G +T K P+ L DI G+ + ++ G P
Sbjct: 454 EYQCKASNDVGS---DTCVGSITLK---APPRFVKKLSDISTVVGEEVQLQATIEGAEPI 507
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
V W D E+ +S ++ + + +++G Y +++N +G E T++
Sbjct: 508 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Query: 364 VLE 366
VLE
Sbjct: 568 VLE 570
Score = 72.5 bits (178), Expect = 8e-13
Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 18/151 (11%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPN--KPVMDLSGVRDITVKAGEDFSIHVPFM 1451
+YT A N AG S + V+E P K + VK E
Sbjct: 267 QYT--CYASNVAGKDS---CSAQLGVQEPPRFIKKLEP-----SRIVKQDEHTRYECKIG 316
Query: 1452 AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
P+ W+ +++ I +S + + A L + N D G Y + N AG ++
Sbjct: 317 GSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 375
Query: 1512 TLHVRVLDRP---HPPENLHADEFAGDSLTL 1539
+ ++V + P P + + G + L
Sbjct: 376 STSLKVKEPPVFRKKPHPVETLK--GADVHL 404
Score = 71.8 bits (176), Expect = 1e-12
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 13/147 (8%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
+ A N AG++ S + V+E PV + G D + P
Sbjct: 361 DYTCEAHNAAGSAS---SSTSLKVKE---PPVF-RKKPHPVETLKGADVHLECELQGTPP 413
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
W + + + S+ + N +D G+Y+ + N G DT +
Sbjct: 414 FQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472
Query: 1516 RVLDRPH---PPENLHADEFAGDSLTL 1539
+ P ++ G+ + L
Sbjct: 473 TLKAPPRFVKKLSDISTVV--GEEVQL 497
Score = 71.4 bits (175), Expect = 2e-12
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
E+ A N G +SA + K R + P LKD+ G + E + G P
Sbjct: 75 EYTCKAENSVGA---VASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL 131
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+V+W DG+ LK D+ T T+ T +S G Y+ N G S +T
Sbjct: 132 QVSWYKDGELLKDDANLQTSFIHNVATLQIL-QTDQSHVGQYNCSASNPLGTASSSAKLT 190
Query: 364 VLE 366
+ E
Sbjct: 191 LSE 193
Score = 71.0 bits (174), Expect = 3e-12
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPF 1450
EY A N+ G+ G + ++ P K DI+ GE+ +
Sbjct: 454 EYQ--CKASNDVGSDT---CVGSITLKAPPRFVKKL-------SDISTVVGEEVQLQATI 501
Query: 1451 MAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDT 1510
+ WF + I + + N A+L ++ ++ G+Y Q+KN AG
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 1511 ATLHVRVLD 1519
+ VL+
Sbjct: 562 CFATLSVLE 570
Score = 70.2 bits (172), Expect = 5e-12
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 13/150 (8%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
+ A N G S ++++E+ P ++D+ G +
Sbjct: 75 EYTCKAENSVGAVA---SSAVLVIKERKLPPSF-ARKLKDVHETLGFPVAFECRINGSEP 130
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
W+ + ++ D + N A+L + + +S GQY NP G +++ +
Sbjct: 131 LQVSWYKDGELLKDDA-NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 1516 RVLDRPHPP------ENLHADEFAGDSLTL 1539
+ + PP ++ G+S T
Sbjct: 190 TLSEHEVPPFFDLKPVSVDLAL--GESGTF 217
Score = 68.7 bits (168), Expect = 1e-11
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I + ++ A N G + +S + + + P + + G+
Sbjct: 161 ILQTDQSHVGQYNCSASNPLGTAS---SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTF 217
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 768
+ G P ++TW D +E++ +T + + + + D+G Y N +
Sbjct: 218 KCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 769 GRDEGSFTI 777
G+D S +
Sbjct: 277 GKDSCSAQL 285
Score = 65.6 bits (160), Expect = 1e-10
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKD-IIIKAGKILNVEIQFIGEPP 302
++ A N G SA + + P+ L+ I+K + E + G P
Sbjct: 267 QYTCYASNVAGK---DSCSAQLGVQ---EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320
Query: 303 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
+V W D E++ S + ++ + ++ N DSG Y E N +G S ++
Sbjct: 321 IKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 363 TVLE 366
V E
Sbjct: 380 KVKE 383
Score = 64.8 bits (158), Expect = 2e-10
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 718
E+ A N G + S A +I K+R L P LKD+ G + E + G P
Sbjct: 75 EYTCKAENSVG-AVASSAVLVI--KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL 131
Query: 719 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+V+W DG+ LK D+ T T+ T +S G Y+ N G S +
Sbjct: 132 QVSWYKDGELLKDDANLQTSFIHNVATLQIL-QTDQSHVGQYNCSASNPLGTASSSAKLT 190
Score = 64.8 bits (158), Expect = 2e-10
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
++ +L+ ++ A N AG + S S + P + + G ++
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSAS-SSTSLKVKE-----PPVFRKKPHPVETLKGADVH 403
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
+E + G PP +V+W D +EL++ + + S + T ++ +N +D G Y + N
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASND 462
Query: 768 SGRDEGSFTIV 778
G D +I
Sbjct: 463 VGSDTCVGSIT 473
Score = 64.1 bits (156), Expect = 4e-10
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I ++ E++ A N+ G S + P+ L DI G+ + +
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDT-CVGSITLKA-----PPRFVKKLSDISTVVGEEVQL 497
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 768
+ G P V W D E+ +S ++ + + +++G Y +++N +
Sbjct: 498 QATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557
Query: 769 GRDEGSFTIV 778
G E T+
Sbjct: 558 GTQECFATLS 567
Score = 63.3 bits (154), Expect = 6e-10
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
P PL+ + G+ + ++ + G P + W + +L++ ++V
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
SD G Y + N+ G S + + E
Sbjct: 65 IN-KVDHSDVGEYTCKAENSVGAVASSAVLVIKE 97
Score = 60.2 bits (146), Expect = 6e-09
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 25/140 (17%)
Query: 1406 GNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDS 1465
G EP P +E + + GE ++ P+ W+ +
Sbjct: 1 GAMEP-----PYFIEP-----------LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHT 44
Query: 1466 IIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP- 1524
+ + Q N ASLV+ SD G+Y + +N G ++ + + +R PP
Sbjct: 45 KLRSAP-AYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103
Query: 1525 -----ENLHADEFAGDSLTL 1539
+++H G +
Sbjct: 104 FARKLKDVHETL--GFPVAF 121
Score = 59.4 bits (144), Expect = 1e-08
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P PL+ + G+ + ++ + G P + W + +L++ ++V
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
SD G Y + N+ G S +V
Sbjct: 65 IN-KVDHSDVGEYTCKAENSVGAVASSAVLV 94
Score = 57.9 bits (140), Expect = 3e-08
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKD-IIIKAGKIL 706
+ +TKG ++ A N AG A + P+ L+ I+K +
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDS-CSAQLGVQE-----PPRFIKKLEPSRIVKQDEHT 309
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
E + G P +V W D E++ S + ++ + ++ N DSG Y E N
Sbjct: 310 RYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Query: 767 TSGRDEGSFTI 777
+G S ++
Sbjct: 369 AAGSASSSTSL 379
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 184 bits (468), Expect = 2e-51
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 1748
HY ++++G G F V G+ +A K I ++E ++E D+ +HP ++
Sbjct: 30 HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL 89
Query: 1749 NLHDAFEDDD----EMVLIFEFLSGGELFERITA---PDYKMSEAEVINYMRQVCEAVKH 1801
L + E L+ F G L+ I ++E +++ + +C ++
Sbjct: 90 RLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEA 149
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPN----------EVVKISTGTA 1851
+H K H D+KP NI+ ++D G + + + T
Sbjct: 150 IHAKGYAHRDLKPTNILLGDEG--QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTI 207
Query: 1852 EFAAPEIVE---REPVGFYTDMWAVGVLAYVL 1880
+ APE+ + TD+W++G + Y +
Sbjct: 208 SYRAPELFSVQSHCVIDERTDVWSLGCVLYAM 239
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual
screening, X-RAY CO- crystal analysis, structure-based
drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB:
3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A*
3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A*
3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ...
Length = 279
Score = 181 bits (462), Expect = 4e-51
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLH 1743
+ ++I +G G FG V+ RE+++ I A K + +E +L R E++I + L
Sbjct: 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRR-EVEIQSHLR 67
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
HP ++ L+ F D + LI E+ G ++ + K E Y+ ++ A+ + H
Sbjct: 68 HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH 126
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP 1863
K +IH D+KPEN++ + +K+ DFG + P+ GT ++ PE++E
Sbjct: 127 SKRVIHRDIKPENLLLGSAG--ELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRM 183
Query: 1864 VGFYTDMWAVGVLAYVL 1880
D+W++GVL Y
Sbjct: 184 HDEKVDLWSLGVLCYEF 200
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 181 bits (462), Expect = 5e-51
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQ 1741
S + Y++L IGTG++G + R + G I K + EK+++ E++++ +
Sbjct: 2 PSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE 61
Query: 1742 LHHPKLINLHDAFED--DDEMVLIFEFLSGGELFERITAPDYK---MSEAEVINYMRQVC 1796
L HP ++ +D D + + ++ E+ GG+L IT + + E V+ M Q+
Sbjct: 62 LKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLT 121
Query: 1797 EAVKHMHEKN-----IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVV-KISTGT 1850
A+K H ++ ++H D+KP N+ + NVK+ DFGLA L+ + K GT
Sbjct: 122 LALKECHRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKTFVGT 179
Query: 1851 AEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
+ +PE + R +D+W++G L Y L
Sbjct: 180 PYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 182 bits (464), Expect = 7e-51
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 7/200 (3%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMNQ 1741
S + L +G G++G V + R ++ G ++A K K+ R E+ +
Sbjct: 53 SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK 112
Query: 1742 L-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+ HP + L A+E+ + L E G L + A + EA+V Y+R A+
Sbjct: 113 VGQHPCCVRLEQAWEEGGILYLQTEL-CGPSLQQHCEAWGASLPEAQVWGYLRDTLLALA 171
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVE 1860
H+H + ++HLDVKP NI K+ DFGL +L ++ G + APE+++
Sbjct: 172 HLHSQGLVHLDVKPANIFL-GPRG-RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQ 229
Query: 1861 REPVGFYTDMWAVGVLAYVL 1880
G D++++G+ +
Sbjct: 230 -GSYGTAADVFSLGLTILEV 248
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Length = 310
Score = 182 bits (463), Expect = 7e-51
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMN 1740
+ ++ I ++IG G F V+R G A K + + + + KEID++
Sbjct: 28 YNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLK 87
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITA---PDYKMSEAEVINYMRQVCE 1797
QL+HP +I + +F +D+E+ ++ E G+L I + E V Y Q+C
Sbjct: 88 QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCS 147
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIS-TGTAEFAAP 1856
A++HMH + ++H D+KP N+ VK+ D GL S GT + +P
Sbjct: 148 ALEHMHSRRVMHRDIKPANVFITATG--VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP 205
Query: 1857 EIVEREPVGFYTDMWAVGVLAY 1878
E + F +D+W++G L Y
Sbjct: 206 ERIHENGYNFKSDIWSLGCLLY 227
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A
{Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 179 bits (457), Expect = 2e-50
Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 44/290 (15%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
A P F +KP S G+S F C V A +TW +N+E++ + + T
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT- 62
Query: 2069 YSSLRKLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQSA-FCYEGQS 2110
L + + + D + Q PRF+ K + + + +
Sbjct: 63 ------LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 116
Query: 2111 VKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN 2170
++ C++ + W+ + E+++S KF + + +ED G+Y A N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 2171 HYGYREEVVFLNVQRKYDLPVIHYK--NHRRANKYDVI--------------WLHNNKEI 2214
G L V+ PV K DV W + +E+
Sbjct: 177 AAGSASSSTSLKVKEP---PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 2215 KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ + S + ++ I + D G Y C+A ND G ++ ++
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 176 bits (448), Expect = 3e-49
Identities = 66/283 (23%), Positives = 101/283 (35%), Gaps = 58/283 (20%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
A P F +KP S G+S F C V A +TW +N+E++ + + T
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI--HYKNHRRANKYD----- 2204
+ + D G+Y A N G L VQ P + R + +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP---PRFIKKLEPSRIVKQDEHTRYE 120
Query: 2205 ----------VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
V+W + EI+ S+ F S V V L++ + EDSG YTCEA N G
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 2255 SFSSCTLLVQ---------------------------------VSWYKDGNPVSDDPATY 2281
+ SS +L V+ VSW+KD + Y
Sbjct: 181 ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KY 239
Query: 2282 QFTQIGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLNV 2320
+ + IL+ D+G+Y + G S+ +
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 124 bits (314), Expect = 2e-31
Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 25/195 (12%)
Query: 2008 QAAPRFVIKPQSA-FCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
Q PRF+ K + + + + ++ C++ + W+ + E+++S KF +
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 2067 TFYSSLRKLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQSAFCYEGQ 2109
L++ S++D+ + + P F KP +G
Sbjct: 156 V-------LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 208
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
V C + ++W + +EL+ K+ + I D GEY +A
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 268
Query: 2170 NHYGYREEVVFLNVQ 2184
N G V + ++
Sbjct: 269 NDVGSYTCVGSITLK 283
Score = 74.0 bits (182), Expect = 4e-14
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++ A N G +S + K P + + G +++E + G PP
Sbjct: 169 DYTCEAHNAAGSAS---SSTSLKVK---EPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+V+W D +EL++ + + S + T ++ +N +D G Y + N G ++T
Sbjct: 223 QVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Query: 364 V 364
+
Sbjct: 282 L 282
Score = 71.7 bits (176), Expect = 3e-13
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 16/149 (10%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPN--KPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
+ A N AG S + V+E P K + VK E
Sbjct: 75 QYTCYASNVAGKDS---CSAQLGVQEPPRFIKKLEPS-----RIVKQDEHTRYECKIGGS 126
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
P+ W+ +++ I +S + + A L + N D G Y + N AG +++
Sbjct: 127 PEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 1514 HVRVLDRPH---PPENLHADEFAGDSLTL 1539
++V + P P + + G + L
Sbjct: 186 SLKVKEPPVFRKKPHPVETLK--GADVHL 212
Score = 70.9 bits (174), Expect = 5e-13
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
P + + G+ + G P ++TW D +E++ +T +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + + D+G Y N +G+D S + V E
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97
Score = 66.7 bits (163), Expect = 1e-11
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFL----APKIKTPLKDIIIKAG 703
++ +L+ ++ A N AG + S S L P + + G
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSAS-SSTS---------LKVKEPPVFRKKPHPVETLKG 207
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
+++E + G PP +V+W D +EL++ + + S + T ++ +N +D G Y +
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCK 266
Query: 764 LRNTSGRDEGSFTIV 778
N G +I
Sbjct: 267 ASNDVGSYTCVGSIT 281
Score = 62.8 bits (153), Expect = 3e-10
Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 6/123 (4%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++ A N G A V PRF IK I+K + E + G P
Sbjct: 75 QYTCYASNVAGKDS-CSAQLGVQEPPRF----IKKLEPSRIVKQDEHTRYECKIGGSPEI 129
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+V W D E++ S + N DSG Y E N +G S ++
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVESVAVLE-MYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188
Query: 364 VLE 366
V E
Sbjct: 189 VKE 191
Score = 62.8 bits (153), Expect = 3e-10
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P + + G+ + G P ++TW D +E++ +T + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTATL 63
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + D+G Y N +G+D S +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Score = 62.1 bits (151), Expect = 4e-10
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 14/125 (11%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
+ A N AG++ S + V+E P KP + G D +
Sbjct: 169 DYTCEAHNAAGSAS---SSTSLKVKEPPVFRKKP-------HPVETLKGADVHLECELQG 218
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
P W + + + S+ + N +D G+Y+ + N G T
Sbjct: 219 TPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 1513 LHVRV 1517
+ +
Sbjct: 278 GSITL 282
Score = 59.0 bits (143), Expect = 4e-09
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ + GE + W ++ I L N+A+L V +
Sbjct: 13 VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTATLTVLKVTKG 71
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPH----PPENLHADEFAGDSLTL 1539
D GQY N AG D+ + + V + P + + +
Sbjct: 72 DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ--DEHTRY 119
Score = 55.1 bits (133), Expect = 7e-08
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 6/131 (4%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+ +TKG ++ A N AG A + RF IK I+K +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDS-CSAQLGVQEPPRF----IKKLEPSRIVKQDEHTR 118
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
E + G P +V W D E++ S + N DSG Y E N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE-MYNLSVEDSGDYTCEAHNA 177
Query: 768 SGRDEGSFTIV 778
+G S ++
Sbjct: 178 AGSASSSTSLK 188
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET: TPO
AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A*
2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A*
3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A*
2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 179 bits (457), Expect = 2e-50
Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 9/197 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLH 1743
D +DI +G G FG V+ RE++ I A K + +E + +R+EI+I + L
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ-LRREIEIQSHLR 72
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
HP ++ +++ F D + L+ EF GEL++ + + E +M ++ +A+ + H
Sbjct: 73 HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH 131
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP 1863
E+ +IH D+KPEN++ + +K+ DFG + P+ + GT ++ PE++E +
Sbjct: 132 ERKVIHRDIKPENLLMGYKG--ELKIADFGWS-VHAPSLRRRTMCGTLDYLPPEMIEGKT 188
Query: 1864 VGFYTDMWAVGVLAYVL 1880
D+W GVL Y
Sbjct: 189 HDEKVDLWCAGVLCYEF 205
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 189 bits (480), Expect = 1e-49
Identities = 70/481 (14%), Positives = 119/481 (24%), Gaps = 92/481 (19%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
+ +P P P ++ + + +G PI VE Y +A+G W+ V
Sbjct: 257 VVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVE-YCTASGSWNDRQP-VD 314
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTN 1157
S +Y + L+ + +Y V T P + ++V+ +
Sbjct: 315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSR 374
Query: 1158 NATLMWDRPRTDGGS-KIQGYKVEFR-------------------STRTATDCGLG---- 1193
T+ W+ + V + S T L
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTN 434
Query: 1194 YQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQP-EVTGYSPSSVSLAWNPP 1249
G+ + +Q+ D P A + L W P
Sbjct: 435 VSVKLILMNPEGRKESQELI--------VQTDEDLPGAVPTESIQGSTFEEKIFLQWREP 486
Query: 1250 ANHGGRPITGYYVEKRERGGEWLRAN--------NYPTTNLNFTVHDLREGGKYEFRVIA 1301
G IT Y + + + + +F L G Y F + A
Sbjct: 487 TQTYGV-ITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRA 545
Query: 1302 INEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYI 1361
G G P+ K E T ++VT+ +P G + Y
Sbjct: 546 STAKGFGPPATNQ--FTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQ 602
Query: 1362 VQKRKKGGD--------------------------------WVDANSVPVPNPVH----- 1384
+ ++ A+S+ P
Sbjct: 603 IVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNK 662
Query: 1385 -----TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVK 1439
L + Y A + A KPV + D TVK
Sbjct: 663 TYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVK 722
Query: 1440 A 1440
Sbjct: 723 G 723
Score = 174 bits (441), Expect = 1e-44
Identities = 78/488 (15%), Positives = 145/488 (29%), Gaps = 56/488 (11%)
Query: 1215 IQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRA 1274
++ P V + + + GR + G + +
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI----GRTVAGDRLWLQGIDVRDAPL 210
Query: 1275 NNYPTTN-----LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
T+ +F V + + ++R + E G G + +V+ P P
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK-----EPPVPI 265
Query: 1330 EAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNL 1389
P++ + + + +G I V+ G W D PV + + +G+L
Sbjct: 266 APPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR--QPVDSTSYKIGHL 323
Query: 1390 SEGEEYTFRVIAVN--EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH 1447
EY V+ E G P + + P+ G R + V + I
Sbjct: 324 DPDTEYEISVLLTRPGEGGTGSP---GPALRTRTKCADPM---RGPRKLEVVEVKSRQIT 377
Query: 1448 VPFMAFPQPAA---------FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQY 1498
+ + F + + V + + N
Sbjct: 378 IRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSP--YTNV 435
Query: 1499 --RLQLKNPAGF-DTATLHVRVL-DRP-HPPENLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
+L L NP G ++ L V+ D P P + + L W P G IT
Sbjct: 436 SVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VIT 494
Query: 1554 NYVVEKKDYNSTVWT--------KVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
Y + K +S +VS L G+TY F + A G P
Sbjct: 495 LYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPP 554
Query: 1606 ALTIDPIKAKHPFDVPGAPGAP--KGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLIS 1663
A + P P ++ T+++++++ H G+P+ Y +
Sbjct: 555 A----TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEER 609
Query: 1664 DDKWIKAS 1671
+ K +
Sbjct: 610 PRRTKKTT 617
Score = 171 bits (434), Expect = 9e-44
Identities = 92/831 (11%), Positives = 174/831 (20%), Gaps = 256/831 (30%)
Query: 594 PTVKDWGE---DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPA--NKTDVK 648
P +K+ DF + G + GNP W + + N+ ++
Sbjct: 67 PQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELA 126
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I Y+ + + ++ P +++ + AG+
Sbjct: 127 ISTFWPN-FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRI-QNVEVNAGQFATF 184
Query: 709 EIQFIGEPPPEVTWTIDGKELKT--DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
+ IG + G +++ +S + N VNT + D+G Y +R
Sbjct: 185 QCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT 244
Query: 767 TSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRIT 826
G ++ + V P P P++ +
Sbjct: 245 EGGVGISNYAEL------------------------------VVKEPPVPIAPPQLASVG 274
Query: 827 KDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAE 886
+ + +G I V+ G W D V +
Sbjct: 275 ATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYK--------------- 319
Query: 887 EKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRA 946
+ H+ P T YE V
Sbjct: 320 --------------------------------IGHLDPD------------TEYEISVLL 335
Query: 947 ENLQGL-----SEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAK 1001
+ T+
Sbjct: 336 TRPGEGGTGSPGPALRTRTK---------------------------------------- 355
Query: 1002 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSL 1061
DP P + EV +++ W P
Sbjct: 356 -CADPMRGPRKLEVVEVKSRQITIRWEP-------------------------------- 382
Query: 1062 SWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA-----YDVFGLETNRQYRFRV 1116
+ N V G + + L ++
Sbjct: 383 ---FGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKL 439
Query: 1117 RAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIV-DWDTNNATLMWDRPRTDGGSKIQ 1175
N G E E + + +P I L W P G I
Sbjct: 440 ILMNPEGRKESQE----LIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VIT 494
Query: 1176 GYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDS---------RIQGR-------- 1218
Y++ +++ + Q +L I+
Sbjct: 495 LYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPP 554
Query: 1219 ----IQSPFDPPDAPSQPEVT--GYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-- 1270
+ P P+ T + ++V++ P + G P++ Y + E
Sbjct: 555 ATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRT 613
Query: 1271 ------------------------------WLRANNYP----------TTNLNFTVHDLR 1290
A++ T + L
Sbjct: 614 KKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLL 673
Query: 1291 EGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS 1341
Y A + A + KP P + D K +
Sbjct: 674 PYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGT 724
Score = 162 bits (411), Expect = 8e-41
Identities = 87/631 (13%), Positives = 173/631 (27%), Gaps = 74/631 (11%)
Query: 1070 GGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
P+ N + T W++ + + Q F V G L
Sbjct: 101 NNGPLGNPIWNISGDPTRTWNRAELAIST------FWPNFYQVIFEVITSGHQGY---LA 151
Query: 1130 LDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQ-------GYKVEFR 1182
+D P T + Q V+ + + + +
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 1183 STRTATDCGLGYQQCHADVGQTPHGWW-LQDSRIQGRIQSPF------DPPDAPSQPEVT 1235
+ + + + G + G S + +PP + P++
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA 271
Query: 1236 GYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKY 1295
+ + + N + +G PI VE G W + P + ++ + L +Y
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW--NDRQPVDSTSYKIGHLDPDTEY 329
Query: 1296 EFRVIAINEAGPGKPSKPTDIVQCKEQKRKPD-PPEAPKVDRITKDSVTLSWRPPKHDGG 1354
E V+ G P ++ + + P P +V + +T+ W P ++
Sbjct: 330 EISVLLTRPGEGG-TGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVT 388
Query: 1355 -ARIKGYIVQKRKKGGD-----WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNS 1408
V + G + +P HT+ NLS + ++I +N G
Sbjct: 389 RCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK 448
Query: 1409 EPGKQSGPVIV---EEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPA-------- 1457
E S +IV E+ P + + + I + + Q
Sbjct: 449 E----SQELIVQTDEDLPGAVP------TESIQGSTFEEKIFLQWREPTQTYGVITLYEI 498
Query: 1458 AFWFAN--DSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK--NPAGF-DTAT 1512
+ + D ID S+ N + G Y ++ GF AT
Sbjct: 499 TYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYP--GTTYSFTIRASTAKGFGPPAT 556
Query: 1513 LHVRVLDRP--HPPENLHADEFAGD-SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK 1569
P L D ++T+ P G ++ Y + ++ K
Sbjct: 557 NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRTKK 615
Query: 1570 VS----SYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+ Y + +L Y + ++P D ++ P P
Sbjct: 616 TTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPY 675
Query: 1626 AP-----KGVDSTEDSISLVWSKPRHDGGSP 1651
+ + + G +
Sbjct: 676 KSYRIYFQAASRANGETKIDCVQVATKGAAT 706
Score = 156 bits (394), Expect = 1e-38
Identities = 98/667 (14%), Positives = 171/667 (25%), Gaps = 95/667 (14%)
Query: 199 KDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 257
K P+ I W +A + I+ Y+ + G G
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNRAEL---AISTFW------PNFYQVIFEVITSGHQGY 149
Query: 258 PSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT- 316
+ V P P +++ + AG+ + IG + G +++
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 317 -DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTT 375
+S + N VNT + D+G Y +R G ++ V++
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK--------- 259
Query: 376 ISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAE 435
E I P L ++ + + PI +E
Sbjct: 260 ------------EPPVPIAPPQLASVGATYLWIQLNANSINGDGPI-----VAREVEYCT 302
Query: 436 YGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENM--YGASEPLDPLF----PDKPS 489
P + + L +Y + G P L P
Sbjct: 303 ASGSWNDRQPV--DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPM 360
Query: 490 PPEGPLEVSNVTKESCKLSWRVPVDDGG-APILHYIIEKMDISRGTWSDAGMTVSLFYDV 548
LEV V + W + + + G VS +
Sbjct: 361 RGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVR-EEVSWDTEN 419
Query: 549 PRLIHR-------KEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPD-APEKPTVKDWG 600
H ++ +N G ++ E T D P P +
Sbjct: 420 SHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDE----DLPGAVPTESIQGSTF 475
Query: 601 EDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE-------VPANKTDVKIPDLT 653
E+ + L W+ P G IT Y I K + L N+T L
Sbjct: 476 EEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLY 534
Query: 654 KGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI 713
G Y F + A G P+ + AP + + + + +
Sbjct: 535 PGTTYSFTIRASTAKGFGPPATNQ----FTTKISAPSMPAYELETPLNQTDN---TVTVM 587
Query: 714 GEPPPE-----VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHL--ELRN 766
+P + I +E + + T + + + + Y+ E
Sbjct: 588 LKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPA 647
Query: 767 TSGRDEGSFTIVPDH-LKNLWNTKKSLHP---------VLHCRGNHLPIMEAVKSRKPDP 816
S + FTI + WNT L P I + K
Sbjct: 648 DSLQAAQPFTIGDNKTYNGYWNTP--LLPYKSYRIYFQAASRANGETKIDCVQVATKGAA 705
Query: 817 PEAPKVD 823
P +
Sbjct: 706 TPKPVPE 712
Score = 155 bits (392), Expect = 2e-38
Identities = 88/722 (12%), Positives = 170/722 (23%), Gaps = 167/722 (23%)
Query: 459 TEGKKYVFRIRTENMYG--ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDG 516
+ +F + T G A + + L P + +++
Sbjct: 132 PNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGR 191
Query: 517 GAPILHYIIEKMDISRGTWSDAGMTVSL----FYDVPRLIHRKEYLFRVKAVNSIGESDT 572
++ +D+ + +T S ++V R +R G +
Sbjct: 192 TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS 251
Query: 573 LETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNP 632
P P + G ++ + +G PI ++
Sbjct: 252 NYAELVVKEP-----PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS 306
Query: 633 YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVN--EAGPSEPSDASDIIMCKQRFLAPK 690
W + P + T KI L EYE V+ E G P A
Sbjct: 307 -WNDR--QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTK-----CAD 358
Query: 691 IKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV 750
+ + + K + I++ EP L V G + V
Sbjct: 359 PMRGPRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLT---VHYCYQVGGQEQVREEV 413
Query: 751 NTKRSDSGTYHL----------ELR----NTSGRDEGSFTIVPDHLKNLWNTKKSLHPVL 796
+ +S H ++ N GR E IV ++ +
Sbjct: 414 SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIV-----------QTDEDL- 461
Query: 797 HCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG 856
P P ++ + L WR P G I Y + +
Sbjct: 462 -------P---------GAVPTESIQGSTFEEKIFLQWREPTQTYG-VITLYEITYKAVS 504
Query: 857 GDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWV 916
+ + V
Sbjct: 505 SFDPEIDLSNQSGRVS-------------------------------------------- 520
Query: 917 PAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWT 976
+ H L GTTY F +RA +G P
Sbjct: 521 -----KLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-------------------- 555
Query: 977 NYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVT--GYSPSSVSLAWNPPANHG 1034
+ P P+ T + ++V++ P + G
Sbjct: 556 --------------------TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRG 595
Query: 1035 GRPITD---KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSK 1091
P++ + C + Y ++ + + ++
Sbjct: 596 A-PVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQ 654
Query: 1092 LSSFVRSPAYDVF---GLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQ 1148
+ + Y+ + L + YR +A ++ ++ T P P +
Sbjct: 655 PFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPE 714
Query: 1149 PQ 1150
Q
Sbjct: 715 KQ 716
Score = 141 bits (356), Expect = 4e-34
Identities = 51/395 (12%), Positives = 98/395 (24%), Gaps = 38/395 (9%)
Query: 287 AGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH 346
+LNV ++ P W I G + Y
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISG-------------DPTRTWNRAELAISTFWPNFYQ 136
Query: 347 LELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKK 406
+ + +G ++ + + N+ V
Sbjct: 137 VIFEVITSGHQG--------YLAIDEVKVLGHPCTRTPHFLRIQNVEVN----------A 178
Query: 407 SLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVF 466
C + I++ + L K F V T+ +
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 467 RIRTENMYG-ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII 525
R G L +P P P ++++V + +G PI+ +
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREV 298
Query: 526 EKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEF 585
E S G+W+D S Y + L EY V
Sbjct: 299 EYCTAS-GSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA 357
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGS-PITDYIIQKKEKGNP----YWMNALEV 640
D P K V + + + W+P + + + + + +
Sbjct: 358 DPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDT 417
Query: 641 PANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ I +L+ ++I +N G E +
Sbjct: 418 ENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQE 452
Score = 114 bits (287), Expect = 1e-25
Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 13/204 (6%)
Query: 65 ALALQWLHIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 124
A + P P P + +++ + ++ A +G I+ VE +G W
Sbjct: 252 NYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCT-ASGSWNDR 310
Query: 125 GDVSGTYTRAENLIEGHDYNFRVKAVNK--IGESLPLVCQSPITAKDPFGRPDR-PGQPT 181
V T + +L +Y V G P + + P R P +
Sbjct: 311 QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG---PALRTRTKCADPMRGPRKLE 367
Query: 182 VTDWGKDHVDLEWTPPKKDGGS-PISQYIIEKKPKYGP-----WEKACIVPANITATSVP 235
V + + + W P + + + G E + + ++
Sbjct: 368 VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTIT 427
Query: 236 DLKEGEEYEFRVIAVNKGGPGEPS 259
+L ++I +N G E
Sbjct: 428 NLSPYTNVSVKLILMNPEGRKESQ 451
Score = 103 bits (258), Expect = 2e-22
Identities = 38/309 (12%), Positives = 84/309 (27%), Gaps = 27/309 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGT-DILHYVV----EKMDMETGRWVPMGDVS 128
P L+ + + W + + V + E R D
Sbjct: 359 PMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTE 418
Query: 129 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP-TVTDW 185
++ + NL + + ++ +N G + + P
Sbjct: 419 NSHPQHTITNLSPYTNVSVKLILMNPEGRKES----QELIVQTDEDLPGAVPTESIQGST 474
Query: 186 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI--------VPANITATSVPDL 237
++ + L+W P + G I+ Y I K + + N T L
Sbjct: 475 FEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGL 533
Query: 238 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCK-PRFVAPKIKTPLKDIIIKAGKILNVEIQ 296
G Y F + A G G P+ L+ + + + V ++
Sbjct: 534 YPGTTYSFTIRASTAKGFGPPA----TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLK 589
Query: 297 FIGEPPPEVT-WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 355
V+ + I +E + + T + + + + Y+ +
Sbjct: 590 PAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADS 649
Query: 356 DEGSFTVTV 364
+ + T+
Sbjct: 650 LQAAQPFTI 658
Score = 101 bits (253), Expect = 1e-21
Identities = 36/261 (13%), Positives = 67/261 (25%), Gaps = 17/261 (6%)
Query: 89 SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR--AENLIEGHDYNFR 146
+ A D L + + + + N + +R
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 239
Query: 147 VKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPIS 206
+ G S P P + G ++ ++ +G PI
Sbjct: 240 CMIRTEGGVG-----ISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIV 294
Query: 207 QYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+E G W P + T+ + L EYE V+ G G +
Sbjct: 295 AREVEYCTASGSWND--RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALR 351
Query: 267 CKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI 326
+ + P + + + K + I++ EP L V
Sbjct: 352 TRTKCADP--MRGPRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLT---VHYCYQVG 404
Query: 327 GYHTIVNTVNTKRSDSGTYHL 347
G + V+ +S H
Sbjct: 405 GQEQVREEVSWDTENSHPQHT 425
Score = 83.7 bits (206), Expect = 4e-16
Identities = 33/247 (13%), Positives = 58/247 (23%), Gaps = 59/247 (23%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE---------KMDMETGRWVP 123
+P + + L+WR P G I Y + ++D+
Sbjct: 461 LPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRV 519
Query: 124 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 183
+ T+ L G Y+F ++A G P + P P T
Sbjct: 520 SKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPP----ATNQFTTKISAPSMPAYELET 575
Query: 184 DWGK--DHVDLEWTPPKKDGGSPISQYIIE----------------------------KK 213
+ + V + P G+P+S Y I
Sbjct: 576 PLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASL 634
Query: 214 PKYGPWEKACIVPANITATS--------------VPDLKEGEEYEFRVIAVNKGGPGEPS 259
+ A ++ A L + Y A ++
Sbjct: 635 LNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKI 694
Query: 260 KASAPVT 266
T
Sbjct: 695 DCVQVAT 701
Score = 61.7 bits (149), Expect = 2e-09
Identities = 31/203 (15%), Positives = 48/203 (23%), Gaps = 48/203 (23%)
Query: 439 DNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF---PDKPSPPEGPL 495
+ V + F GL G Y F IR G P F PS P L
Sbjct: 514 NQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYEL 573
Query: 496 EVS-NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLF--------- 545
E N T + + + P GAP+ Y I + + +
Sbjct: 574 ETPLNQTDNTVTVMLK-PAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNA 632
Query: 546 ----------------------------------YDVPRLIHRKEYLFRVKAVNSIGESD 571
Y L+ K Y +A +
Sbjct: 633 SLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGET 692
Query: 572 TLETTKTTVARNEFDEPDAPEKP 594
++ + +P +
Sbjct: 693 KIDCVQVATKGAATPKPVPEPEK 715
Score = 43.6 bits (102), Expect = 0.001
Identities = 17/171 (9%), Positives = 37/171 (21%), Gaps = 13/171 (7%)
Query: 2106 YEGQSVKFTCRVIAIATPTLTW----FHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
+ +V W + + + + Y + +
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAI-STFWPNFYQVIFEVITSGHQ 147
Query: 2162 GEYIIRAEN-------HYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEI 2214
G I + + + V R + +
Sbjct: 148 GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD 207
Query: 2215 KPSNDFAYSSVAHV-HTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
P + +S + + D+G Y C + G S+ LV
Sbjct: 208 APLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Score = 40.9 bits (95), Expect = 0.006
Identities = 20/154 (12%), Positives = 36/154 (23%), Gaps = 45/154 (29%)
Query: 74 PSPPEGPL-KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV----- 127
PS P L P N T ++ + + G + Y + + R ++
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGAP-VSVYQIVVEEERPRRTKKTTEILKCYP 624
Query: 128 ------------SGTYTRAE--------------------------NLIEGHDYNFRVKA 149
S Y AE L+ Y +A
Sbjct: 625 VPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQA 684
Query: 150 VNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 183
++ + C T +P +
Sbjct: 685 ASRANGETKIDCVQVATKGAATPKPVPEPEKQTD 718
Score = 38.2 bits (88), Expect = 0.041
Identities = 15/159 (9%), Positives = 34/159 (21%), Gaps = 8/159 (5%)
Query: 2023 YEGQSVKFTCRVIAIATPTLTW----FHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQID 2078
+ +V W + + + + +
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQG 148
Query: 2079 RFSIQDTSFDRRQAAPRFVI-KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQ- 2136
+I + + Q+ GQ F C I + +++
Sbjct: 149 YLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 2137 --SVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG 2173
+ +F + T D G+Y G
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247
Score = 35.9 bits (82), Expect = 0.20
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
E V+ D P + + +L + ++ N G K S
Sbjct: 407 EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG-RKESQE 452
Score = 33.6 bits (76), Expect = 0.85
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS----TSKERPKFP 1938
+ +N L + ++ L G Y F ++A A GF P++ T P P
Sbjct: 511 DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMP 569
Score = 33.2 bits (75), Expect = 1.3
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNA--AGFSKPSSTSK 1932
+W + V +Y + L +YE V G P +
Sbjct: 303 ASGSWN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALR 351
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity
residues, POLO-like K structure based drug design,
ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens}
PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A*
3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A*
3dbe_A* 3dbf_A*
Length = 294
Score = 177 bits (451), Expect = 2e-49
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLH 1743
Y +G G F + T +FA K +P + + +++ EI I L
Sbjct: 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSM-EISIHRSLA 73
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
H ++ H FED+D + ++ E L E ++E E Y+RQ+ +++H
Sbjct: 74 HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH 132
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PNEVVKISTGTAEFAAPEIVERE 1862
+IH D+K N+ VK+ DFGLATK++ E K+ GT + APE++ ++
Sbjct: 133 RNRVIHRDLKLGNLFLNEDL--EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKK 190
Query: 1863 PVGFYTDMWAVGVLAYVL 1880
F D+W++G + Y L
Sbjct: 191 GHSFEVDVWSIGCIMYTL 208
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 177 bits (451), Expect = 7e-49
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLH 1743
Y +G G F + T +FA K +P + + +++ EI I L
Sbjct: 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSM-EISIHRSLA 99
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
H ++ H FED+D + ++ E L E ++E E Y+RQ+ +++H
Sbjct: 100 HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH 158
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PNEVVKISTGTAEFAAPEIVERE 1862
+IH D+K N+ VK+ DFGLATK++ E K+ GT + APE++ ++
Sbjct: 159 RNRVIHRDLKLGNLFLNEDL--EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKK 216
Query: 1863 PVGFYTDMWAVGVLAYVL 1880
F D+W++G + Y L
Sbjct: 217 GHSFEVDVWSIGCIMYTL 234
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase, activation,
KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Length = 365
Score = 177 bits (449), Expect = 2e-48
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 21/214 (9%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRER-----KTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL 1742
+ +G GAF V+ + K F K ++ E + + ++ +
Sbjct: 65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPS 124
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERI----TAPDYKMSEAEVINYMRQVCEA 1798
+ + A + VL+ E S G L I P+ M + VI++ ++
Sbjct: 125 MQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYM 184
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTR---------NSTNVKMIDFGLA---TKLDPNEVVKI 1846
++ +H+ IIH D+KP+N + S + +ID G + +
Sbjct: 185 IEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTA 244
Query: 1847 STGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVL 1880
T+ F E++ +P + D + V Y +
Sbjct: 245 KCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCM 278
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 170 bits (433), Expect = 8e-48
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 20/234 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
AP P + W PP+ GY V+ +G A+ + +
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVPSV 60
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
+ +L YE +V A G G S V C+ + P P + ++ L
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSSL---VSCRTHQEVPSEPGRLAFNVVSSTVTQL 117
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGD------WVDANSVPVPNPVHTVGNLSEGEEYTFR 1398
SW P G I Y V D N + + NL E + Y +
Sbjct: 118 SWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 1399 VIAVNEAGNSEPGKQSGPVI-VEEQPNKPVM--DLSGVRDITVKAGEDFSIHVP 1449
V A N AG G + +I + QP +P+ + + + ++GED+ +
Sbjct: 177 VKARNGAG---WGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLM 227
Score = 120 bits (302), Expect = 2e-30
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 17/203 (8%)
Query: 76 PPEGPLKPS--NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGTYT 132
P P+ + W P + Y V+ + D
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVPSV 60
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 192
NL DY +V A GE S ++ + P PG+ L
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVTQL 117
Query: 193 EWTPPKKDGGSPISQYII------EKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR 246
W P + G I+ Y + + GP +K + + +L+E + Y +
Sbjct: 118 SWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 247 VIAVNKGGPGEPSKASAPVTCKP 269
V A N G G +A + +P
Sbjct: 177 VKARNGAGWGPEREAIINLATQP 199
Score = 110 bits (276), Expect = 7e-27
Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 14/197 (7%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-L 544
+W P + Y ++ +
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFV 604
++ L +Y +V A + GE + R + P P +
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEG---PYSSLVSCRTHQEVPSEPGRLAFNVVSSTVT 115
Query: 605 DLAWKPPLNDGGSPITDYIIQ-----KKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYE 659
L+W P G IT Y + + L + I +L + Q Y
Sbjct: 116 QLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Query: 660 FRVIAVNEAGPSEPSDA 676
+ V A N AG +A
Sbjct: 175 YTVKARNGAGWGPEREA 191
Score = 107 bits (270), Expect = 4e-26
Identities = 43/240 (17%), Positives = 71/240 (29%), Gaps = 44/240 (18%)
Query: 1143 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR--------------STRTAT 1188
P P + W P K GY+V++ +
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 1189 DCGLG----YQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSS 1241
L Y+ + G+ P+ + ++ + P P + S +
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVS-------CRTHQEVPSEPGRLAFNVVSSTV 114
Query: 1242 VSLAWNPPANHGGRPITGYYV------EKRERGGEWLRANNYPTTNLNFTVHDLREGGKY 1295
L+W PA G IT Y V + G + N + +LRE Y
Sbjct: 115 TQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPY 173
Query: 1296 EFRVIAINEAGPGKPSKPTDIVQCKEQKRKP-DPPEAPKVDRI--TKDSVTLSWRPPKHD 1352
+ V A N AG G + I+ Q ++P P P + + S+ D
Sbjct: 174 RYTVKARNGAGWGPEREA--IINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
Score = 102 bits (255), Expect = 4e-24
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 8/164 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P+N +A + W PP +G + Y V+ + P V
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP--SG--KPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLV 1640
+ NL YE +V A G + + + +VP PG + L
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYS---SLVSCRTHQEVPSEPGRLAFNVVSSTVTQLS 118
Query: 1641 WSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTS 1684
W++P G I Y V L++DD M + + K
Sbjct: 119 WAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRM 161
Score = 92.1 bits (229), Expect = 1e-20
Identities = 35/235 (14%), Positives = 60/235 (25%), Gaps = 36/235 (15%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
PQ P + +W PP Y V+ + + P+
Sbjct: 6 LGAPQNP-NAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSV 60
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATL 1161
++ L Y +V A G ++ + VP PG+ + L
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSS---LVSCRTHQEVPSEPGRLAFNVVSSTVTQL 117
Query: 1162 MWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVG------------------- 1202
W P G +I Y+V + ++ D
Sbjct: 118 SWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 1203 ---QTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVS-----LAWNPP 1249
+ GW + I P P P P++ S L ++
Sbjct: 177 VKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
Score = 89.5 bits (222), Expect = 1e-19
Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 19/200 (9%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL----F 484
Y ++ G + + L Y ++ G +
Sbjct: 36 YRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH 95
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-- 542
+ PS P L + V+ +LSW P + G I Y + ++ M
Sbjct: 96 QEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVL 153
Query: 543 -----SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK 597
+ + L + Y + VKA N G E +A P P +
Sbjct: 154 VDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI-INLATQPKRPMSIPIIPDIP 212
Query: 598 ----DWGEDFVD-LAWKPPL 612
GED+ L + +
Sbjct: 213 IVDAQSGEDYDSFLMYSDDV 232
Score = 81.4 bits (201), Expect = 7e-17
Identities = 42/281 (14%), Positives = 65/281 (23%), Gaps = 99/281 (35%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY ++ G A + + L YE +V A QG
Sbjct: 35 GYRVKYW--IQGDSESEAHL-LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPY----- 86
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
V ++ + P P + S
Sbjct: 87 ----------------------------------SSLVSCRTHQEVPSEPGRLAFNVVSS 112
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV- 1079
+ L+W PA G IT Y V
Sbjct: 113 TVTQLSWAEPAETNG-------------------------------------EITAYEVC 135
Query: 1080 -----EKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSI 1134
+ L ++ + L ++ YR+ V+A N G E ++
Sbjct: 136 YGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINL 195
Query: 1135 TAKFPFTVPDPPGQ-PQIVDWDTNNAT--------LMWDRP 1166
T P P P I D +A LM+
Sbjct: 196 A-----TQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
Score = 72.5 bits (178), Expect = 7e-14
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 11/136 (8%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVV------EKKDYNSTVWTKVSS 1572
+ P P L + + L W P + G EIT Y V + + +
Sbjct: 97 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 1573 YVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH--PFDVPGAPGAPK-G 1629
+ + NL Y + V A N G I + + P +P P P
Sbjct: 156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVD 215
Query: 1630 VDSTEDSIS-LVWSKP 1644
S ED S L++S
Sbjct: 216 AQSGEDYDSFLMYSDD 231
Score = 67.1 bits (164), Expect = 4e-12
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
AP+ P K G + W PP Y ++ +G+ A + + V
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDS-ESEAHLLDSKVPSV 60
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
++ +L +YE +V A G S
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSC 92
Score = 65.2 bits (159), Expect = 2e-11
Identities = 22/151 (14%), Positives = 31/151 (20%), Gaps = 55/151 (36%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P + ++ LSW P G I Y V D +
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKK------ 151
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
V +P + +
Sbjct: 152 ---------------------------------------------VLVDNPKNRMLLIEN 166
Query: 934 LLEGTTYEFRVRAENLQG---LSEPITTKEP 961
L E Y + V+A N G E I
Sbjct: 167 LRESQPYRYTVKARNGAGWGPEREAIINLAT 197
Score = 49.0 bits (117), Expect = 6e-06
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P+ P + +W PP + GY V+ +G +A+ + P
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 874 L 874
L
Sbjct: 62 L 62
Score = 38.2 bits (89), Expect = 0.018
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
+ + A+ K P+ + +L DYE +V A A G SS R
Sbjct: 43 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCR 93
Score = 37.1 bits (86), Expect = 0.045
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ K+ ++ +L + Y + VKA+N AG+
Sbjct: 145 PIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA 191
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 176 bits (449), Expect = 1e-47
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 16/202 (7%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPKLI 1748
+ + +G GA G + R A K I +E+ ++ + HP +I
Sbjct: 26 FCPKDVLGHGAEGTI-VYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVI 81
Query: 1749 NLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNII 1808
+D + E L L E + D+ E I ++Q + H+H NI+
Sbjct: 82 RYFCTEKDRQFQYIAIE-LCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIV 140
Query: 1809 HLDVKPENIMCQTRNST---NVKMIDFGLATKLDPNE----VVKISTGTAEFAAPEIVER 1861
H D+KP NI+ N+ + DFGL KL GT + APE++
Sbjct: 141 HRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSE 200
Query: 1862 EPVGFYT---DMWAVGVLAYVL 1880
+ T D+++ G + Y +
Sbjct: 201 DCKENPTYTVDIFSAGCVFYYV 222
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 172 bits (438), Expect = 2e-47
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP- 1745
Y IL++IG+G V + + I+A K++ + + L R EI +N+L
Sbjct: 29 IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87
Query: 1746 -KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
K+I L+D D + ++ E +L + + E +Y + + EAV +H+
Sbjct: 88 DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQ 145
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GTAEFAAPEIVER 1861
I+H D+KP N + +K+IDFG+A ++ P+ + GT + PE ++
Sbjct: 146 HGIVHSDLKPANFLI---VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD 202
Query: 1862 EP-----------VGFYTDMWAVGVLAYVL 1880
+ +D+W++G + Y +
Sbjct: 203 MSSSRENGKSKSKISPKSDVWSLGCILYYM 232
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 171 bits (435), Expect = 9e-47
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHP- 1745
Y IL++IG+G V + + I+A K++ + N + R EI +N+L
Sbjct: 10 IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68
Query: 1746 -KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
K+I L+D D + ++ E +L + + E +Y + + EAV +H+
Sbjct: 69 DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQ 126
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GTAEFAAPEIVER 1861
I+H D+KP N + +K+IDFG+A ++ P+ + GT + PE ++
Sbjct: 127 HGIVHSDLKPANFLI---VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD 183
Query: 1862 EP-----------VGFYTDMWAVGVLAYVL 1880
+ +D+W++G + Y +
Sbjct: 184 MSSSRENGKSKSKISPKSDVWSLGCILYYM 213
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK,
protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 170 bits (433), Expect = 2e-46
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--------IRKEIDIMN 1740
Y + +G+GAFG V +++ KFI LE + EI I++
Sbjct: 25 KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS 84
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEF-LSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
++ H +I + D FE+ L+ E SG +LF I ++ E RQ+ AV
Sbjct: 85 RVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAV 143
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIV 1859
++ K+IIH D+K ENI+ +K+IDFG A L+ ++ GT E+ APE++
Sbjct: 144 GYLRLKDIIHRDIKDENIVIAEDF--TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVL 201
Query: 1860 EREP-VGFYTDMWAVGVLAYVL 1880
P G +MW++GV Y L
Sbjct: 202 MGNPYRGPELEMWSLGVTLYTL 223
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 165 bits (419), Expect = 3e-46
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 10/191 (5%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID-DSDTRVHKQLTMNSASLVVKNSQR 1492
+ G +I A+P WF + ++ + + + T +++ L V
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSE 85
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEI 1552
+D G Y N G ++ + D P P + ++ + + + P GG I
Sbjct: 86 NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPI 144
Query: 1553 TNYVVEKKDYNS----TVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
Y E + + W V + L +TY R+ A N GL + +
Sbjct: 145 LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Query: 1609 ID----PIKAK 1615
+ P++ +
Sbjct: 205 SEFKTQPVQGE 215
Score = 134 bits (338), Expect = 2e-35
Identities = 44/302 (14%), Positives = 88/302 (29%), Gaps = 94/302 (31%)
Query: 671 SEPSDASDIIMCKQRFL-APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL 729
+ + AS ++ + + APK++ P + G +N+ + P ++W DG+ L
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 730 KTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNT 788
+ + + + + + +D G Y+ N G++ F +V
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV---------- 109
Query: 789 KKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGY 848
++ P P +V+ + + + P+ GG I Y
Sbjct: 110 ---------------------QADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKY 147
Query: 849 IVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRD 908
+ R G + +
Sbjct: 148 KAEWRAVGEEVWHSKWYDAK---------------------------------------- 167
Query: 909 LTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP-----ITTKEPVV 963
+ + T+ L TTY R+ A N +GL E T+ PV
Sbjct: 168 -------------EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-PVQ 213
Query: 964 AK 965
+
Sbjct: 214 GE 215
Score = 116 bits (293), Expect = 2e-29
Identities = 40/241 (16%), Positives = 76/241 (31%), Gaps = 35/241 (14%)
Query: 258 PSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTD 317
+ +SA V APK++ P + G +N+ + P ++W DG+ L +
Sbjct: 4 AAASSALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS 62
Query: 318 S-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTI 376
+ + + + + +D G Y+ N G++ F + +T S + +
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
Query: 377 SSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEY 436
+ ++ P +PI++ Y E
Sbjct: 123 E---------------PYSSTAQVQFD-----EPEAT---GGVPILK-----YKAEWRAV 154
Query: 437 GLDNWK----TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL-FPDKPSPP 491
G + W + T+ GL Y R+ N G E F +P
Sbjct: 155 GEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQG 214
Query: 492 E 492
E
Sbjct: 215 E 215
Score = 104 bits (261), Expect = 4e-25
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 559 FRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSP 618
+ AVN IG+ A D P +P V+ + + + P GG P
Sbjct: 91 YNCTAVNRIGQESL--EFILVQA----DTPSSPSIDQVEPYS-STAQVQFDEPEATGGVP 143
Query: 619 ITDYIIQKKEKGNPYWMNALEVPAN---KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
I Y + + G W + + V I L Y R+ A+N G E S
Sbjct: 144 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
Query: 676 ASDII 680
AS+
Sbjct: 204 ASEFK 208
Score = 103 bits (259), Expect = 9e-25
Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 1284 FTVHDLREG--GKYEFRVIAINEAGPGKPSKPTDIVQCK-EQKRKPDPPEAPKVDRITKD 1340
V E G Y A+N G + ++ Q P P +V+
Sbjct: 78 LEVTPDSENDFGNYN--CTAVNRIG-------QESLEFILVQADTPSSPSIDQVE-PYSS 127
Query: 1341 SVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDAN---SVPVPNPVHTVGNLSEGEEYT 1396
+ + + P+ GG I Y + R G + W + T+ L Y
Sbjct: 128 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 187
Query: 1397 FRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
R+ A+N G E S + QP +
Sbjct: 188 VRLAALNGKGLGEI---SAASEFKTQPVQG 214
Score = 101 bits (253), Expect = 5e-24
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA----TGFWSKLS 1093
D PS P + + + + P GG PI Y E W
Sbjct: 110 QADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167
Query: 1094 SFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSIT 1135
+ GL+ Y R+ A N G+ E T
Sbjct: 168 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 99.1 bits (247), Expect = 4e-23
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYP----T 1279
D P +PS +V YS S+ + ++ P GG PI Y E R G E + Y +
Sbjct: 112 DTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPE 1330
T+ L+ Y R+ A+N G G+ S ++ K +P E
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF------KTQPVQGE 215
Score = 93.7 bits (233), Expect = 2e-21
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-----YGPWEKACIVP 226
P P V + +++ P+ GG PI +Y E + + W A
Sbjct: 112 DTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 227 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
T + LK Y R+ A+N G GE S AS T +
Sbjct: 171 MEGIVT-IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQ 213
Score = 89.9 bits (223), Expect = 6e-20
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-- 543
D PS P + ++ + P GG PIL Y E + W
Sbjct: 112 DTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 544 ---LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ L Y R+ A+N G + ++
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208
Score = 81.0 bits (200), Expect = 5e-17
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM----DMETGRWVPMGDVSG 129
PS P S+ +++ P GG IL Y E ++ +W + S
Sbjct: 114 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 171
Query: 130 -TYTRAENLIEGHDYNFRVKAVNKIGESLP 158
L Y R+ A+N G
Sbjct: 172 EGIVTIVGLKPETTYAVRLAALNGKGLGEI 201
Score = 69.9 bits (171), Expect = 3e-13
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 2089 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2148
AP+ P + + +EG V TC V A + T++WF + Q L S +
Sbjct: 15 SHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP 73
Query: 2149 Y--TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
+ D G Y A N G L
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
Score = 62.5 bits (152), Expect = 1e-10
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKA 1670
D P +P + V+ + + + +P GG PI +Y E R + ++ W
Sbjct: 112 DTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK 162
Score = 56.4 bits (136), Expect = 2e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 2204 DVIWLHNNKEIKPSNDFAYS--SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+ W + + + SN + L++ D G Y C A N G+ L
Sbjct: 49 TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 2262 LVQ 2264
+
Sbjct: 109 VQA 111
Score = 53.3 bits (128), Expect = 2e-07
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 1113 RFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ--IVDWDTNNATLMWDRPRTDG 1170
+ A N+ G + +F D P P V+ ++ A + +D P G
Sbjct: 90 NYNCTAVNRIG---------QESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATG 140
Query: 1171 GSKIQGYKVEFRST 1184
G I YK E+R+
Sbjct: 141 GVPILKYKAEWRAV 154
Score = 47.5 bits (113), Expect = 2e-05
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 1875 VLAYVLD--VAEDTNWRVANDYL---VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+L Y + + W + + L Y R+ A N G + S+
Sbjct: 144 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
Query: 1930 TSK 1932
S+
Sbjct: 204 ASE 206
Score = 45.6 bits (108), Expect = 5e-05
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
AP+ P + + +EG V TC V A + T++WF + Q L S +
Sbjct: 15 SHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP 73
Query: 2066 YTFYSSLRKLQIDR 2079
S L
Sbjct: 74 SA--SYLEVTPDSE 85
Score = 32.1 bits (73), Expect = 1.6
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 2264 QVSWYKDGNPV-SDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+SW++DG + S + + + +++ + +D G Y+
Sbjct: 49 TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 169 bits (429), Expect = 5e-46
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHPK 1746
+Y +L+ IG G F V R TG A K I + + + +E+ IM L+HP
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++ L + E + + LI E+ SGGE+F+ + A +M E E + RQ+ AV++ H+K
Sbjct: 76 IVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCHQKR 134
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-VG 1865
I+H D+K EN++ N+K+ DFG + + + G +AAPE+ + + G
Sbjct: 135 IVHRDLKAENLLLDADM--NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDG 192
Query: 1866 FYTDMWAVGVLAYVL 1880
D+W++GV+ Y L
Sbjct: 193 PEVDVWSLGVILYTL 207
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein, serine/threonine-protein
kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 169 bits (430), Expect = 1e-45
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP- 1745
Y IL++IG+G V + + I+A K++ + + L R EI +N+L
Sbjct: 57 IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115
Query: 1746 -KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
K+I L+D D + ++ E +L + + E +Y + + EAV +H+
Sbjct: 116 DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQ 173
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GTAEFAAPEIVER 1861
I+H D+KP N + +K+IDFG+A ++ P+ + G + PE ++
Sbjct: 174 HGIVHSDLKPANFLI---VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKD 230
Query: 1862 EP-----------VGFYTDMWAVGVLAYVL 1880
+ +D+W++G + Y +
Sbjct: 231 MSSSRENGKSKSKISPKSDVWSLGCILYYM 260
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 167 bits (424), Expect = 2e-45
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 30/220 (13%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPKL 1747
+ + G F V+ ++ +G +A K + + + I +E+ M +L HP +
Sbjct: 29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNI 88
Query: 1748 INLHDAF-------EDDDEMVLIFEFLSGGELFERI--TAPDYKMSEAEVINYMRQVCEA 1798
+ A + L+ L G+L E + +S V+ Q C A
Sbjct: 89 VQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRA 148
Query: 1799 VKHMHEKN--IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST-------- 1848
V+HMH + IIH D+K EN++ + +K+ DFG AT + S
Sbjct: 149 VQHMHRQKPPIIHRDLKVENLLLSNQG--TIKLCDFGSATTISHYPDYSWSAQRRALVEE 206
Query: 1849 -----GTAEFAAPEIVE---REPVGFYTDMWAVGVLAYVL 1880
T + PEI++ P+G D+WA+G + Y+L
Sbjct: 207 EITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLL 246
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB:
2pmn_X* 2pmo_X*
Length = 348
Score = 166 bits (423), Expect = 4e-45
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 32/220 (14%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI-----------------PVSHNLEKE 1730
+ Y I+ + G F + C + +A K +S + +
Sbjct: 31 NDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88
Query: 1731 LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITA-------PDYKM 1783
+ E+ I+ + + + + DE+ +I+E++ + + +
Sbjct: 89 DFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFI 148
Query: 1784 SEAEVINYMRQVCEAVKHMH-EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNE 1842
+ ++ V + ++H EKNI H DVKP NI+ VK+ DFG + + ++
Sbjct: 149 PIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG--RVKLSDFGES-EYMVDK 205
Query: 1843 VVKISTGTAEFAAPEIVEREPV--GFYTDMWAVGVLAYVL 1880
+K S GT EF PE E G D+W++G+ YV+
Sbjct: 206 KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVM 245
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 169 bits (429), Expect = 5e-45
Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 35/229 (15%)
Query: 1682 YTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQ 1741
+ S+ + + +G G+ G V + G A K + + ++ EI ++ +
Sbjct: 9 FEQSLKNLVVSEKILGYGSSGTV-VFQGSFQGRPVAVKRMLIDFC---DIALMEIKLLTE 64
Query: 1742 L-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDY------KMSEAEVINYMRQ 1794
HP +I + + D + + E L L + + + + E I+ +RQ
Sbjct: 65 SDDHPNVIRYYCSETTDRFLYIALE-LCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQ 123
Query: 1795 VCEAVKHMHEKNIIHLDVKPENIMCQTRNST-----------NVKMIDFGLATKLDPNEV 1843
+ V H+H IIH D+KP+NI+ T + + + DFGL KLD +
Sbjct: 124 IASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQS 183
Query: 1844 VKIST-----GTAEFAAPEI----VEREPVGFYT---DMWAVGVLAYVL 1880
+ GT+ + APE+ + T D++++G + Y +
Sbjct: 184 SFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYI 232
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 163 bits (415), Expect = 1e-44
Identities = 44/219 (20%), Positives = 95/219 (43%), Gaps = 30/219 (13%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDIMNQLHHPK 1746
++ ++ +G G FGVV + + +A K I + + L +E + +E+ + +L HP
Sbjct: 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64
Query: 1747 LINLHDAFEDDDEMV------------LIFEFLSGGELFERITA--PDYKMSEAEVINYM 1792
++ +A+ + + + + L + + + + ++
Sbjct: 65 IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124
Query: 1793 RQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVK------- 1845
Q+ EAV+ +H K ++H D+KP NI + VK+ DFGL T +D +E +
Sbjct: 125 LQIAEAVEFLHSKGLMHRDLKPSNIFFTMDD--VVKVGDFGLVTAMDQDEEEQTVLTPMP 182
Query: 1846 ------ISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
GT + +PE + D++++G++ +
Sbjct: 183 AYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILF 221
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A*
3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A*
2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A*
3cy3_A* 2bik_B* ...
Length = 320
Score = 163 bits (414), Expect = 3e-44
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 13/221 (5%)
Query: 1670 ASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK 1729
+ K + Y + +G+G FG V+ A K + +
Sbjct: 25 NDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW 84
Query: 1730 ------ELIRKEIDIMNQLHH--PKLINLHDAFEDDDEMVLIFEFLSG-GELFERITAPD 1780
+ E+ ++ ++ +I L D FE D VLI E +LF+ IT
Sbjct: 85 GELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG 144
Query: 1781 YKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP 1840
+ E ++ QV EAV+H H ++H D+K ENI+ N +K+IDFG L
Sbjct: 145 -ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDL-NRGELKLIDFGSGALL-K 201
Query: 1841 NEVVKISTGTAEFAAPEIVEREP-VGFYTDMWAVGVLAYVL 1880
+ V GT ++ PE + G +W++G+L Y +
Sbjct: 202 DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM 242
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 160 bits (407), Expect = 2e-43
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 15/224 (6%)
Query: 1669 KASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE 1728
P K + Y + +G G FG V A K IP + L
Sbjct: 12 APPGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLG 71
Query: 1729 KELIRK------EIDIMNQLH----HPKLINLHDAFEDDDEMVLIFEF-LSGGELFERIT 1777
+ E+ ++ ++ HP +I L D FE + +L+ E L +LF+ IT
Sbjct: 72 WSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYIT 131
Query: 1778 APDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK 1837
+ E + QV A++H H + ++H D+K ENI+ R K+IDFG
Sbjct: 132 EKG-PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRG-CAKLIDFGSGA- 188
Query: 1838 LDPNEVVKISTGTAEFAAPEIVEREP-VGFYTDMWAVGVLAYVL 1880
L +E GT ++ PE + R +W++G+L Y +
Sbjct: 189 LLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDM 232
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 159 bits (404), Expect = 3e-43
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 7/196 (3%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 1745
HY + + +G G FG V + TG+ A K + ++ I++EI + HP
Sbjct: 12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHP 71
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+I L+ + ++ E++SGGELF+ I ++ E E +Q+ AV + H
Sbjct: 72 HIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCHRH 130
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-V 1864
++H D+KPEN++ N K+ DFGL+ + E ++ S G+ +AAPE++
Sbjct: 131 MVVHRDLKPENVLLDAHM--NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYA 188
Query: 1865 GFYTDMWAVGVLAYVL 1880
G D+W+ GV+ Y L
Sbjct: 189 GPEVDIWSCGVILYAL 204
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 161 bits (409), Expect = 5e-43
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
D YD +++IG+G FGV R++ T + A K+I E +++EI L HP +
Sbjct: 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNI 78
Query: 1748 INLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNI 1807
+ + + +I E+ SGGEL+ERI + SE E + +Q+ V + H I
Sbjct: 79 VRFKEVILTPTHLAIIMEYASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCHSMQI 137
Query: 1808 IHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-VGF 1866
H D+K EN + + +K+ DFG + + K + GT + APE++ R+ G
Sbjct: 138 CHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGK 197
Query: 1867 YTDMWAVGVLAYVL 1880
D+W+ GV YV+
Sbjct: 198 IADVWSCGVTLYVM 211
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 155 bits (393), Expect = 6e-43
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 18/190 (9%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY--AGDDYT 2150
AP F QS EG + F + P ++WF + Q + S + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI--HYKNHRRANKYDVI-- 2206
I + G Y ++A N G L V+ + P ++ V
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 2207 ------------WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
+ + EI+ S DF S +++L IAE +PEDSG Y+ A N G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 2255 SFSSCTLLVQ 2264
+ S+ LLVQ
Sbjct: 185 ATSTAELLVQ 194
Score = 132 bits (334), Expect = 4e-35
Identities = 47/195 (24%), Positives = 71/195 (36%), Gaps = 25/195 (12%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
AP F QS EG + F + P ++WF + Q + S + + D
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD---- 60
Query: 2070 SSLRKLQIDRFSIQDT--------------------SFDRRQAAPRFVIKPQSAFCYEGQ 2109
KL I + ++ A P FV + QS +G
Sbjct: 61 -GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
V+ RV I TP + ++ + E++ S+ F GD Y+ +I ED G Y + A
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 2170 NHYGYREEVVFLNVQ 2184
N G L VQ
Sbjct: 180 NSVGRATSTAELLVQ 194
Score = 91.3 bits (227), Expect = 1e-20
Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 43/159 (27%)
Query: 2204 DVIWLHNNKEIKPSN--DFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+V W + + I S S L I + +SG Y+ +A N G++ S+ L
Sbjct: 36 EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
Query: 2262 LVQ------------------------------------VSWYKDGNPVSDDPATYQFTQ 2285
LV+ V +Y+DG + +Q +Q
Sbjct: 96 LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL-DFQISQ 154
Query: 2286 IGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLNV 2320
G Y + I +D G YS G + L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 75.1 bits (185), Expect = 4e-15
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ + A N G + ++A + K P L+ + ++ G + ++++ G P P
Sbjct: 77 RYSLKATNGSGQ---ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP 133
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
V + DG E+++ ++ G + DSGTY + N+ GR + +
Sbjct: 134 VVKFYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
Query: 364 V 364
V
Sbjct: 193 V 193
Score = 67.1 bits (164), Expect = 3e-12
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
IP +TK + + A N +G + ++ ++ K P L+ + ++ G + +
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQAT---STAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 768
+++ G P P V + DG E+++ ++ G + DSGTY + N+
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 769 GRDEGSFTIV 778
GR + ++
Sbjct: 183 GRATSTAELL 192
Score = 66.3 bits (162), Expect = 5e-12
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
+ + A N +G + + ++V+ + P + ++ +TV+ G + V P
Sbjct: 77 RYSLKATNGSGQAT---STAELLVKAETAPPNF-VQRLQSMTVRQGSQVRLQVRVTGIPT 132
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
P ++ + + I S + SL++ + D G Y + N G T+T +
Sbjct: 133 PVVKFYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 1516 RV 1517
V
Sbjct: 192 LV 193
Score = 64.7 bits (158), Expect = 1e-11
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
A P FV + QS +G V+ RV I TP + ++ + E++ S+ F GD Y
Sbjct: 100 ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
+ L I +D+
Sbjct: 160 S-------LLIAEAYPEDS 171
Score = 63.2 bits (154), Expect = 5e-11
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYHT 330
AP PL+ +++ G E G P PEV+W DG+ + T ++ S G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISK 370
+ +++SG Y L+ N SG+ + + V +
Sbjct: 65 LT-IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
Score = 60.5 bits (147), Expect = 5e-10
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD-TRVHKQLTMNSASLVVKNSQR 1492
+ + V G + FP P WF + +I S V + A L + +
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
++ G+Y L+ N +G T+T + V PP
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
Score = 57.8 bits (140), Expect = 4e-09
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYHT 745
AP PL+ +++ G E G P PEV+W DG+ + T ++ S G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ +++SG Y L+ N SG+ + +
Sbjct: 65 LT-IPAVTKANSGRYSLKATNGSGQATSTAEL 95
Score = 43.6 bits (103), Expect = 2e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 2264 QVSWYKDGNPVSDDPAT-YQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSL 2318
+VSW++DG +S Q + K+ I + T + G+YS + G + L
Sbjct: 36 EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
Query: 2319 NVVKES 2324
V E+
Sbjct: 96 LVKAET 101
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824;
1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A*
2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 158 bits (401), Expect = 8e-43
Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 1684 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQ 1741
S + LE+IG+G FG V +C +R G I+A K P++ +++++ +E+
Sbjct: 7 SRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAV 66
Query: 1742 L-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK---MSEAEVINYMRQVCE 1797
L H ++ A+ +DD M++ E+ +GG L + I+ EAE+ + + QV
Sbjct: 67 LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGR 126
Query: 1798 AVKHMHEKNIIHLDVKPENIM-----------------CQTRNSTNVKMIDFGLATKLDP 1840
++++H +++H+D+KP NI N K+ D G T++
Sbjct: 127 GLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS 186
Query: 1841 NEVVKISTGTAEFAAPEIV-EREPVGFYTDMWAVGVLAYVL 1880
+V G + F A E++ E D++A+ +
Sbjct: 187 PQVE---EGDSRFLANEVLQENYTHLPKADIFALALTVVCA 224
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 155 bits (394), Expect = 5e-42
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 1746
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++ + + + L E+ SGGELF+RI PD M E + + Q+ V ++H
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKI---STGTAEFAAPEIVEREP 1863
I H D+KPEN++ R+ N+K+ DFGLAT N ++ GT + APE+++R
Sbjct: 126 ITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE 183
Query: 1864 -VGFYTDMWAVGVLAYVL 1880
D+W+ G++ +
Sbjct: 184 FHAEPVDVWSCGIVLTAM 201
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization,
cell adhesion, protein binding, oncoprotein; 2.01A {Homo
sapiens} PDB: 2fnb_A
Length = 203
Score = 152 bits (386), Expect = 6e-42
Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 15/188 (7%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNLN 1283
P+ + SS+ L W P + I GY + G G + + ++
Sbjct: 22 EVPQPTDLSFVDITDSSIGLRWTPLNSS---TIIGYRITVVAAGEGIPIFEDFVDSSVGY 78
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
+TV L G Y+ V + G P+ T Q+ PP + I D++
Sbjct: 79 YTVTGLEPGIDYDISVYTVKNGGESTPTTLT-------QQTAVPPPTDLRFTNIGPDTMR 131
Query: 1344 LSWRPPKHDGGARIKGYIVQKR-KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
++W PP + ++V+ K + V S+ + + NL G EY V +V
Sbjct: 132 VTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV 188
Query: 1403 NEAGNSEP 1410
E S P
Sbjct: 189 YEQHESTP 196
Score = 131 bits (331), Expect = 1e-34
Identities = 44/206 (21%), Positives = 70/206 (33%), Gaps = 15/206 (7%)
Query: 474 YGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRG 533
+ S L P P L ++T S L W + I+ Y I + G
Sbjct: 8 HHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEG 64
Query: 534 TWSDAGMTVS--LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
S +Y V L +Y V V + GES T+ T P
Sbjct: 65 IPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTA-------VPPP 117
Query: 592 EKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPD 651
+ G D + + W PP + +T+++++ N + L + + V + +
Sbjct: 118 TDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 174
Query: 652 LTKGQEYEFRVIAVNEAGPSEPSDAS 677
L G EY V +V E S P
Sbjct: 175 LLPGTEYVVSVSSVYEQHESTPLRGR 200
Score = 124 bits (313), Expect = 3e-32
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 18/194 (9%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P P + L +IT SS L W + I+ Y + + G + V +
Sbjct: 23 VPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVG 77
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 190
L G DY+ V V GES P + +T + P T+ G D +
Sbjct: 78 YYTVTGLEPGIDYDISVYTVKNGGESTP----TTLTQQTA---VPPPTDLRFTNIGPDTM 130
Query: 191 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRVIA 249
+ W PP ++ +++ P + A + + + A + +L G EY V +
Sbjct: 131 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 187
Query: 250 VNKGGPGEPSKASA 263
V + P +
Sbjct: 188 VYEQHESTPLRGRQ 201
Score = 97.6 bits (243), Expect = 9e-23
Identities = 33/156 (21%), Positives = 47/156 (30%), Gaps = 15/156 (9%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
R + P L DIT S L W P S I Y + + G
Sbjct: 16 PRGSHMEVPQPTD-LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDF 71
Query: 1095 FVRSPA-YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVD 1153
S Y V GLE Y V G S P ++T + T PP + +
Sbjct: 72 VDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPT----TLTQQ---TAVPPPTDLRFTN 124
Query: 1154 WDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+ + W P + + V + + D
Sbjct: 125 IGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEED 157
Score = 93.7 bits (233), Expect = 2e-21
Identities = 29/212 (13%), Positives = 62/212 (29%), Gaps = 36/212 (16%)
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGY 1177
+ + + S + + P VD ++ L W S I GY
Sbjct: 4 SHHHHHHSSG------LVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGY 54
Query: 1178 KVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSR-----------IQGRIQSP---- 1222
++ + G G V + + + ++ +S
Sbjct: 55 RITVVAA------GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL 108
Query: 1223 --FDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKR-ERGGEWLRANNYPT 1279
P+ T P ++ + W PP + +T + V + E + +
Sbjct: 109 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEEDVAELSISP 165
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
++ + +L G +Y V ++ E P
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 92.6 bits (230), Expect = 4e-21
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFVRV 1581
P +L + S+ L WTP S I Y + + + + V
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTV 81
Query: 1582 RNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVW 1641
L G Y+ V G S P P + + D++ + W
Sbjct: 82 TGLEPGIDYDISVYTVKNGGESTPTTL-------TQQTAVPPPTDLRFTNIGPDTMRVTW 134
Query: 1642 SKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSL 1680
+ P + ++V + +++ + D ++
Sbjct: 135 APPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 170
Score = 84.9 bits (210), Expect = 2e-18
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
+ + S L + + E P + D + + L W P S I Y
Sbjct: 4 SHHHHHHSSGLVPRGSHM------EVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGY 54
Query: 623 IIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
I G + V ++ + L G +Y+ V V G S P+ +
Sbjct: 55 RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT 109
Score = 82.6 bits (204), Expect = 1e-17
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 13/159 (8%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
Y I + G V ++TV GL G Y + T G S P
Sbjct: 52 IGYRITVVAAGEGIPIFEDFVDS--SVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT 109
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
PP L +N+ ++ +++W P + ++++ + A +++S
Sbjct: 110 QQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVR-YSPVKNEEDVAELSIS 164
Query: 544 ---LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ L+ EY+ V +V ES L + T
Sbjct: 165 PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT 203
Score = 81.0 bits (200), Expect = 5e-17
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 8/112 (7%)
Query: 1300 IAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKG 1359
+ + S + + P IT S+ L W P + I G
Sbjct: 1 MGSSHHHHHHSSGLVP----RGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIG 53
Query: 1360 YIVQKRKKG-GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
Y + G G + + V +TV L G +Y V V G S P
Sbjct: 54 YRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTP 105
Score = 78.3 bits (193), Expect = 4e-16
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 221
S + + +P + D + L WTP S I Y I
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68
Query: 222 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
V +++ +V L+ G +Y+ V V GG P+ +
Sbjct: 69 EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110
Score = 76.0 bits (187), Expect = 2e-15
Identities = 32/231 (13%), Positives = 49/231 (21%), Gaps = 87/231 (37%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY I G G + V + TV L G Y+ V G S P T +
Sbjct: 53 GYRITVVAA--GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
P+ T P
Sbjct: 111 QT-------------------------------------------AVPPPTDLRFTNIGP 127
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
++ + W PP + +TN++V
Sbjct: 128 DTMRVTWAPPPS---------------------------------------IDLTNFLVR 148
Query: 1081 KYESATGFWSKLSSFVRSPA--YDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
Y + + L +Y V + + S PL
Sbjct: 149 -YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 198
Score = 62.2 bits (151), Expect = 1e-10
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 1515 VRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV 1574
+ PP +L D++ + W PP ++TN++V + S
Sbjct: 108 LTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSIS 164
Query: 1575 TTP-FVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ V + NL G+ Y V + + S P
Sbjct: 165 PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 53.7 bits (129), Expect = 9e-08
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 59/147 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP + I D++ ++W P P+ T
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWA------------------------------PPPSIDLT 143
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+++ V ++ +SP D+ +
Sbjct: 144 ---------------------------NFLVRYS-PVKNEEDVAELS-ISPSDNAVVLTN 174
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTKE 960
LL GT Y V + Q S P+ ++
Sbjct: 175 LLPGTEYVVSVSSVYEQHESTPLRGRQ 201
Score = 49.4 bits (118), Expect = 3e-06
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDA 862
++ + P IT S+ L W P + I GY + G G +
Sbjct: 13 GLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFE 69
Query: 863 NSVPVPNPVHTL 874
+ V +T+
Sbjct: 70 DFVDSSVGYYTV 81
Score = 37.5 bits (87), Expect = 0.026
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 1611 PIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKA 1670
+ + P VD T+ SI L W+ S I Y + + I
Sbjct: 13 GLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFE 69
Query: 1671 SMAHIPDTS 1679
Sbjct: 70 DFVDSSVGY 78
Score = 36.7 bits (85), Expect = 0.040
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1875 VLAYVLDVAE--DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
++ Y + V + + Y V L G DY+ V G S P++ +
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT 109
Score = 34.0 bits (78), Expect = 0.31
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
++ +LL G +Y V + S P
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 154 bits (392), Expect = 9e-42
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 1745
+Y I++ +G G+F V TG A K I + ++ I +EI + L HP
Sbjct: 14 NYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 73
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+I L+D + DE++++ E+ +G ELF+ I D KMSE E + +Q+ AV++ H
Sbjct: 74 HIIKLYDVIKSKDEIIMVIEY-AGNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCHRH 131
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-V 1864
I+H D+KPEN++ NVK+ DFGL+ + +K S G+ +AAPE++ +
Sbjct: 132 KIVHRDLKPENLLLDEHL--NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYA 189
Query: 1865 GFYTDMWAVGVLAYVL 1880
G D+W+ GV+ YV+
Sbjct: 190 GPEVDVWSCGVILYVM 205
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative splicing,
apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo
sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A
1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 153 bits (389), Expect = 4e-41
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P +
Sbjct: 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNI 79
Query: 1748 INLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNI 1807
+N D++ DE+ ++ E+L+GG L + +T M E ++ R+ +A++ +H +
Sbjct: 80 VNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQV 137
Query: 1808 IHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPVG 1865
IH D+K +NI+ +VK+ DFG ++ P E K ST GT + APE+V R+ G
Sbjct: 138 IHRDIKSDNILLGMDG--SVKLTDFGFCAQITP-EQSKRSTMVGTPYWMAPEVVTRKAYG 194
Query: 1866 FYTDMWAVGVLA 1877
D+W++G++A
Sbjct: 195 PKVDIWSLGIMA 206
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 154 bits (392), Expect = 5e-41
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 1745
Y I E +G G+FG V KT A KFI + ++ + +EI + L HP
Sbjct: 10 PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHP 69
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+I L+D ++V++ E+ +GGELF+ I +M+E E + +Q+ A+++ H
Sbjct: 70 HIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCHRH 127
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-V 1864
I+H D+KPEN++ NVK+ DFGL+ + +K S G+ +AAPE++ +
Sbjct: 128 KIVHRDLKPENLLLDDNL--NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYA 185
Query: 1865 GFYTDMWAVGVLAYVL 1880
G D+W+ G++ YV+
Sbjct: 186 GPEVDVWSCGIVLYVM 201
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 155 bits (395), Expect = 5e-41
Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK---ELIRKEIDIMNQLHH 1744
DH++IL IG G+FG V ++ T ++A K++ +E+ + KE+ IM L H
Sbjct: 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH 74
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
P L+NL +F+D+++M ++ + L GG+L + + E V ++ ++ A+ ++
Sbjct: 75 PFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMALDYLQN 133
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPV 1864
+ IIH D+KP+NI+ +V + DF +A L + GT + APE+
Sbjct: 134 QRIIHRDMKPDNILLDEHG--HVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKG 191
Query: 1865 GFYT---DMWAVGVLAY 1878
Y+ D W++GV AY
Sbjct: 192 AGYSFAVDWWSLGVTAY 208
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 153 bits (389), Expect = 7e-41
Identities = 49/192 (25%), Positives = 100/192 (52%), Gaps = 7/192 (3%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
D +IG G+ G+V RE+ +G A K + + +EL+ E+ IM H +
Sbjct: 45 LLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNV 104
Query: 1748 INLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNI 1807
+ ++ ++ +E+ ++ EFL GG L + ++ +++E ++ V +A+ ++H + +
Sbjct: 105 VEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIATVCEAVLQALAYLHAQGV 162
Query: 1808 IHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPVG 1865
IH D+K ++I+ VK+ DFG ++ +V K + GT + APE++ R
Sbjct: 163 IHRDIKSDSILLTLDG--RVKLSDFGFCAQIS-KDVPKRKSLVGTPYWMAPEVISRSLYA 219
Query: 1866 FYTDMWAVGVLA 1877
D+W++G++
Sbjct: 220 TEVDIWSLGIMV 231
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 153 bits (389), Expect = 8e-41
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 1746
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++ + + + L E+ SGGELF+RI PD M E + + Q+ V ++H
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKI---STGTAEFAAPEIVEREP 1863
I H D+KPEN++ R+ N+K+ DFGLAT N ++ GT + APE+++R
Sbjct: 126 ITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE 183
Query: 1864 -VGFYTDMWAVGVLAYVL 1880
D+W+ G++ +
Sbjct: 184 FHAEPVDVWSCGIVLTAM 201
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 163 bits (414), Expect = 9e-41
Identities = 71/511 (13%), Positives = 121/511 (23%), Gaps = 64/511 (12%)
Query: 962 VVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPS 1021
NQ ++L W+ H I GK +P + E +
Sbjct: 401 YALDNQNLRQLWDWSK----------HNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKG 450
Query: 1022 SVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV-- 1079
+ + L W+P + +++
Sbjct: 451 RQE---RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFY 507
Query: 1080 ----------------------EKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVR 1117
+ S P + + GL+ QY V+
Sbjct: 508 KEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVK 567
Query: 1118 AENQYGVSEPLELDNS--ITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQ 1175
+ S I + T P P P V ++ L W P G I
Sbjct: 568 TLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NIT 626
Query: 1176 GYKVEFRS-------------TRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQGRIQSP 1222
Y V + + + H + P
Sbjct: 627 HYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCP 686
Query: 1223 FDPPDAPSQPEVTGYSPSSVSLAWN-PPANHGGRPITGYYVEKRERGGEWLRANNYPTTN 1281
+ E + + + N R E R
Sbjct: 687 KTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNK 746
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV--QCKEQKRKPDPPEAPKVDRITK 1339
+ + LR Y + A N+ P + V + + + D +
Sbjct: 747 ESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFEN 806
Query: 1340 DSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV---HTVGNLSEGEEYT 1396
+ V L W+ PK G I Y V R+ G + + + + LS G Y+
Sbjct: 807 NVVHLMWQEPKEPNGL-IVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYS 864
Query: 1397 FRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
R+ A + AGN + P V
Sbjct: 865 VRIRATSLAGNGSW---TEPTYFYVTDYLDV 892
Score = 142 bits (358), Expect = 5e-34
Identities = 69/491 (14%), Positives = 144/491 (29%), Gaps = 56/491 (11%)
Query: 1151 IVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWL 1210
D N +WD + + I K+ F + + + G
Sbjct: 400 FYALDNQNLRQLWDWSKHN--LTITQGKLFFHYNPKLCLSEIHKMEEVSGT----KGRQE 453
Query: 1211 QDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE 1270
++ + + S + L W P R + G+ + +E +
Sbjct: 454 RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ 513
Query: 1271 ---------------W---------LRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAG 1306
W + + + + L+ +Y V +
Sbjct: 514 NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFS 573
Query: 1307 PGKPSK--PTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQK 1364
+ + +DI+ + P P P + + L W+PP G I Y+V
Sbjct: 574 DERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFW 632
Query: 1365 RKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPN 1424
++ D S G ++ + + +++ + P
Sbjct: 633 ERQAED-----SELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPK 687
Query: 1425 KPVMDLSGVRDITVKAG-EDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSA 1483
L + + + + ED+ +V F+ P + +++ + +N
Sbjct: 688 TDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE 747
Query: 1484 SLVVKNSQRSDGGQYRLQLK--NPAG---FDTATLHVRVLDRPH-----PPENLHADEFA 1533
SLV+ + YR++L+ N + +V P + + F
Sbjct: 748 SLVISGLRH--FTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFE 805
Query: 1534 GDSLTLYWTPPRDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTY 1590
+ + L W P++ G I Y V D + + R+R L+ G Y
Sbjct: 806 NNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NY 863
Query: 1591 EFRVMAENQYG 1601
R+ A + G
Sbjct: 864 SVRIRATSLAG 874
Score = 107 bits (267), Expect = 3e-23
Identities = 42/360 (11%), Positives = 85/360 (23%), Gaps = 63/360 (17%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR------STRTATDCGL 1192
+ + + + + L W+ + G+ + ++ T
Sbjct: 465 QASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC 524
Query: 1193 GYQQCHADVGQTPHGWWLQDSRIQGR---------------------------------- 1218
G P S+
Sbjct: 525 GSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSD 584
Query: 1219 ---IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRA 1274
+Q+ P P P S S + L W PP++ G IT Y V +R+ L
Sbjct: 585 IIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE 643
Query: 1275 NNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV 1334
+Y L + + + + +C +
Sbjct: 644 LDYCLKGLKLPSR------TWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELE 697
Query: 1335 DRITKDSVTLSWRPPKHDG------GARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGN 1388
+ S ++ H+ + + + V +
Sbjct: 698 ES----SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISG 753
Query: 1389 LSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHV 1448
L Y + A N+ E + V P D+ V +T + E+ +H+
Sbjct: 754 LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDI--VGPVTHEIFENNVVHL 811
Score = 99 bits (248), Expect = 5e-21
Identities = 65/510 (12%), Positives = 122/510 (23%), Gaps = 128/510 (25%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII--------------EKMDI 530
+ + L W +L +++ +
Sbjct: 465 QASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC 524
Query: 531 SRGTWS-----------DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESD--TLETTK 577
+W+ D + + L +Y VK + + + +
Sbjct: 525 GSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSD 584
Query: 578 TTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA 637
+ + P P P + L WKPP + G IT Y++ + + +
Sbjct: 585 IIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE 643
Query: 638 LEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKD 697
L+ +K+P T + + + ++ C
Sbjct: 644 LDY--CLKGLKLPSRT----WSPPFESEDSQKHNQSEYEDSAGECCSCPKTD-------S 690
Query: 698 IIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS-- 755
I+K + + F V ++ ++ + H V K S
Sbjct: 691 QILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750
Query: 756 ----DSGT-YHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVK 810
T Y +EL+ + V ++ T
Sbjct: 751 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA--RTMPEAKA---------------- 792
Query: 811 SRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 870
D + + V L W+ PK G I Y V R+ G + + +
Sbjct: 793 ---DDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVLYEVSYRRYGDEEL---HLCDTRK 845
Query: 871 VHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHAT 930
L E G +
Sbjct: 846 HFAL------------------------ERGCRL-------------------------- 855
Query: 931 VPRLLEGTTYEFRVRAENLQG---LSEPIT 957
R L Y R+RA +L G +EP
Sbjct: 856 --RGLSPGNYSVRIRATSLAGNGSWTEPTY 883
Score = 98.1 bits (243), Expect = 2e-20
Identities = 65/508 (12%), Positives = 124/508 (24%), Gaps = 73/508 (14%)
Query: 128 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 187
G N +++ V+ + T D + + +
Sbjct: 423 QGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSF 482
Query: 188 DHVDLEWTPPKKDGGSPISQYIIEKKPKYG------------------------PWEKAC 223
D + L W P + +++ K P
Sbjct: 483 DKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSND 542
Query: 224 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA--SAPVTCKPRFVAPKIKTPLK 281
N + LK +Y V + + S + + P + PL
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSV--PLD 600
Query: 282 DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRS 340
+ + +I +PP + I + + + + R+
Sbjct: 601 ---PISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRT 657
Query: 341 DSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKN 400
S + E + E + + KT++ +
Sbjct: 658 WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEES------------------ 699
Query: 401 LWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPG--FCPKEFFTVKGL 458
+ +K+ LH N + + + R + +N + P KE + GL
Sbjct: 700 --SFRKTFEDYLH---NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGL 754
Query: 459 TEGKKYVFRIRTENMYGASEPLDP--------LFPDKPSPPEGPLEVSNVTKESCKLSWR 510
Y ++ N E + K GP+ L W+
Sbjct: 755 RHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQ 814
Query: 511 VPVDDGGAPILHYII---EKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSI 567
P + G I+ Y + D R + Y R++A +
Sbjct: 815 EPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLA 873
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPT 595
G E T V D D P
Sbjct: 874 GNGSWTEPTYFYVT----DYLDVPSNIA 897
Score = 91.5 bits (226), Expect = 2e-18
Identities = 52/459 (11%), Positives = 117/459 (25%), Gaps = 60/459 (13%)
Query: 1269 GEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
+W + N T F ++ + ++ ++ + + +Q +
Sbjct: 412 WDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENE 471
Query: 1329 PEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKK--------------GGDWVDA 1374
R + D + L W P + G+++ ++ G +
Sbjct: 472 LLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTV 531
Query: 1375 NSVPVP----------NPVHTVGNLSEGEEYTFRVIAVNEAGNSEP--GKQSGPVIVEEQ 1422
+ P +P + L +Y V + + G +S + V+
Sbjct: 532 VDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 591
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID-------DSDTRVH 1475
P S D + I + + P N +I ++
Sbjct: 592 ATNP----SVPLDPISVSNSSSQIILKWKPPSDP------NGNITHYLVFWERQAEDSEL 641
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEF 1532
+L L + + S + ++ + P + E
Sbjct: 642 FELDYCLKGLKLPSRTWS----PPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK-EL 696
Query: 1533 AGDSLTLYWTPPRDNG-----GSEITNYVVEKKDYNSTVWTKVSSYVTT-PFVRVRNLAI 1586
S + N S + + + + + V + + L
Sbjct: 697 EESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRH 756
Query: 1587 GSTYEFRVMAENQYGLSKPALTIDPIKAK--HPFDVPGAPGAPKGVDSTEDSISLVWSKP 1644
+ Y + A NQ + + A+ G + + L+W +P
Sbjct: 757 FTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEP 816
Query: 1645 RHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
+ G I Y V R D++
Sbjct: 817 KEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCR 854
Score = 91.1 bits (225), Expect = 3e-18
Identities = 53/369 (14%), Positives = 110/369 (29%), Gaps = 43/369 (11%)
Query: 437 GLDNWKTVPGFCPKEF----------FTVKGLTEGKKYVFRIRTENMYGASEPL-----D 481
G ++W V P + ++GL +Y ++T + D
Sbjct: 525 GSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSD 584
Query: 482 PLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSD 537
++ PS P + + L W+ P D G I HY++ + +
Sbjct: 585 IIYVQTDATNPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF 642
Query: 538 AGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK 597
+P + + ++ +S + ++ A P +K
Sbjct: 643 ELDYCLKGLKLPS----RTWSPPFESEDSQKHN---QSEYEDSAGECCSCPKTDS-QILK 694
Query: 598 DWGEDFVDLAWKPPLNDGGSPITD-----YIIQKKEKGNPYWMNALEVPANKTDVKIPDL 652
+ E ++ L++ + GN E NK + I L
Sbjct: 695 ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGL 754
Query: 653 TKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQF 712
Y + A N+ P E + + + A + + + V + +
Sbjct: 755 RHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIV-GPVTHEIFENNVVHLMW 813
Query: 713 IGEPPPE-----VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
+ P E V + + + + + T + + + G Y + +R T
Sbjct: 814 --QEPKEPNGLIVLYEVSYRRYGDEELHLCDTR-KHFALERGCRLRGLSPGNYSVRIRAT 870
Query: 768 SGRDEGSFT 776
S GS+T
Sbjct: 871 SLAGNGSWT 879
Score = 88.8 bits (219), Expect = 1e-17
Identities = 33/260 (12%), Positives = 77/260 (29%), Gaps = 20/260 (7%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENM--YGASEPLDPLFPD 486
Y++ D+ ++ + + +E+ + SE D
Sbjct: 628 YLVFWERQAEDSE-----LFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGEC 682
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDD-------GGAPILHYIIEKMDISRGTWSDAG 539
P + + + S + ++ + + + +
Sbjct: 683 CSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK 742
Query: 540 MTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEP--DAPEKPTVK 597
+ + L H Y ++A N + AR + D T +
Sbjct: 743 VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE 802
Query: 598 DWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNP--YWMNALEVPANKTDVKIPDLTKG 655
+ + V L W+ P G I Y + + G+ + + + A + ++ L+ G
Sbjct: 803 IFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG 861
Query: 656 QEYEFRVIAVNEAGPSEPSD 675
Y R+ A + AG ++
Sbjct: 862 -NYSVRIRATSLAGNGSWTE 880
Score = 88.8 bits (219), Expect = 1e-17
Identities = 54/465 (11%), Positives = 106/465 (22%), Gaps = 80/465 (17%)
Query: 72 HIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG------------ 119
+ L W D+L +++ +
Sbjct: 466 ASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACG 525
Query: 120 -------------RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQ--SP 164
R + L Y VK + +
Sbjct: 526 SNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI 585
Query: 165 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 224
I + P P P + L+W PP G I+ Y++ + + E
Sbjct: 586 IYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE- 643
Query: 225 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDII 284
+ + + + + + C I
Sbjct: 644 ----LDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD-------SQI 692
Query: 285 IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS---- 340
+K + + F V ++ ++ + H V K S
Sbjct: 693 LKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVIS 752
Query: 341 --DSGT-YHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDH 397
T Y +EL+ + ++T + +
Sbjct: 753 GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADD--------------IVGP 798
Query: 398 LKNLWNMKKSLH----PVLHCRGNHLPIMEAVKSRYIIEMAEYGLDN---WKTVPGFCPK 450
+ + +H G I+ Y + YG + T F +
Sbjct: 799 VTHEIFENNVVHLMWQEPKEPNG---LIVL-----YEVSYRRYGDEELHLCDTRKHFALE 850
Query: 451 EFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF---PDKPSPPE 492
++GL+ G Y RIR ++ G +P + D P
Sbjct: 851 RGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPS 894
Score = 73.8 bits (180), Expect = 5e-13
Identities = 26/194 (13%), Positives = 50/194 (25%), Gaps = 27/194 (13%)
Query: 1520 RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVV---------------------- 1557
+ + D + L W P ++ +++
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527
Query: 1558 --EKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTI--DPIK 1613
D + + + P +R L + Y V + + D I
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 587
Query: 1614 AKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMA 1673
+ P P P V ++ I L W P G I Y+V ++D +
Sbjct: 588 VQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDY 646
Query: 1674 HIPDTSLKYTSSVY 1687
+ L +
Sbjct: 647 CLKGLKLPSRTWSP 660
Score = 71.1 bits (173), Expect = 4e-12
Identities = 53/380 (13%), Positives = 82/380 (21%), Gaps = 123/380 (32%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD----WVDANSVPVP 868
P P P + + L W+PP G I Y+V ++ D +D +
Sbjct: 594 NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGLK 652
Query: 869 NPVHTLL---------------SIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGG 913
P T + + K ++L E+ + D H
Sbjct: 653 LPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNV 712
Query: 914 GWVPAVNHVSPY---------------------DHHATVPRLLEGTTYEFRVRAENLQGL 952
+VP + + L T Y ++A N
Sbjct: 713 VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTP 772
Query: 953 SEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQ 1012
E + V A+ +P+ D
Sbjct: 773 EERCSVAAYVSART----------------------MPEA------------KADDIVGP 798
Query: 1013 PEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS 1072
+ + V L W P G
Sbjct: 799 VTHEIFENNVVHLMWQEPKEPNG------------------------------------- 821
Query: 1073 PITNYVV---EKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
I Y V + F + GL Y R+RA + G
Sbjct: 822 LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSW-- 878
Query: 1130 LDNSITAKFPFTVPDPPGQP 1149
T F V D P
Sbjct: 879 -----TEPTYFYVTDYLDVP 893
Score = 31.0 bits (69), Expect = 5.5
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
++Y E+ + + + + L G+ Y R++A + AG +
Sbjct: 827 EVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEP 881
Score = 30.7 bits (68), Expect = 8.4
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 1896 VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
V + ++ L Y ++A N + S +
Sbjct: 744 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVA 779
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain; 2.60A
{Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 151 bits (382), Expect = 2e-40
Identities = 50/291 (17%), Positives = 81/291 (27%), Gaps = 48/291 (16%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR-----------STRTATD 1189
V D P Q + D A + W PR + Y + +
Sbjct: 13 PVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSV 72
Query: 1190 CGL----GYQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSV 1242
L Y+ ++ S Q DAP V + +S+
Sbjct: 73 QALRPGSRYEVSISAVRGTNESD------ASSTQFTT-----EIDAPKNLRVGSRTATSL 121
Query: 1243 SLAWNPPANHGGRPITGYYVEKRERGGE---WLRANNYPTTNLNFTVHDLREGGKYEFRV 1299
L W+ Y V GE + T+ DL G +Y +
Sbjct: 122 DLEWDNSEA----EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGI 177
Query: 1300 IAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKG 1359
A+ + P+ + + D P V ++ S++L W I
Sbjct: 178 SAVMNSKQSIPATMN-------ARTELDSPRDLMVTASSETSISLIWTKASGP----IDH 226
Query: 1360 YIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
Y + G +VP +T+ +L G EY + A S
Sbjct: 227 YRITFTPSSGIS-SEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276
Score = 144 bits (364), Expect = 5e-38
Identities = 48/256 (18%), Positives = 78/256 (30%), Gaps = 23/256 (8%)
Query: 427 SRYIIE-MAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP 485
+++ G T P ++V+ L G +Y I S+ F
Sbjct: 43 DFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDA----GMT 541
+ P+ L V + T S L W A Y + ++ + + G+
Sbjct: 103 TEIDAPKN-LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIG 157
Query: 542 VSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGE 601
+ + L+ EY + AV + +S T D+P V E
Sbjct: 158 PTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE-------LDSPRDLMVTASSE 210
Query: 602 DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFR 661
+ L W PI Y I + VP ++T + DL G EY
Sbjct: 211 TSISLIWTKAS----GPIDHYRITFTPSSGISSE--VTVPRDRTSYTLTDLEPGAEYIIS 264
Query: 662 VIAVNEAGPSEPSDAS 677
+ A S S
Sbjct: 265 ITAERGRQQSLESTVD 280
Score = 139 bits (351), Expect = 3e-36
Identities = 54/307 (17%), Positives = 85/307 (27%), Gaps = 55/307 (17%)
Query: 1029 PPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGF 1088
P GG P + V D++ + W PP + Y + G
Sbjct: 2 SPGISGGGGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGL---VGGEGG 57
Query: 1089 WSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQ 1148
+ Y V L +Y + A S+ + T D P
Sbjct: 58 KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT-------TEIDAPKN 110
Query: 1149 PQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR-----------------STRTATDCG 1191
++ + L WD ++ Q YKV + T T
Sbjct: 111 LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTD 166
Query: 1192 L----GYQ---QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSL 1244
L Y + Q+ + + R D+P VT S +S+SL
Sbjct: 167 LVPGTEYGVGISAVMNSKQSI------PATMNAR-----TELDSPRDLMVTASSETSISL 215
Query: 1245 AWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINE 1304
W + PI Y + G P ++T+ DL G +Y + A
Sbjct: 216 IWTKASG----PIDHYRITFTPSSGIS-SEVTVPRDRTSYTLTDLEPGAEYIISITAERG 270
Query: 1305 AGPGKPS 1311
S
Sbjct: 271 RQQSLES 277
Score = 133 bits (337), Expect = 2e-34
Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 30/227 (13%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNF 1284
D P+Q V S + + W PP + ++ G +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGEGGKTTFRLQPPLSQY 70
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
+V LR G +YE + A+ S + D P+ +V T S+ L
Sbjct: 71 SVQALRPGSRYEVSISAVRGTNESDASSTQFTT-------EIDAPKNLRVGSRTATSLDL 123
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV---HTVGNLSEGEEYTFRVIA 1401
W + A + Y V G+ VP T+ +L G EY + A
Sbjct: 124 EWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISA 179
Query: 1402 VNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHV 1448
V + S P + + + P RD+ V A + SI +
Sbjct: 180 VMNSKQSIP----ATMNARTELDSP-------RDLMVTASSETSISL 215
Score = 119 bits (300), Expect = 2e-29
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 13/190 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P+ L+ + T +S +LEW + + Y + VP G T T
Sbjct: 105 IDAPKN-LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 193
+L+ G +Y + AV +S+P + + A+ D P VT + + L
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIP----ATMNARTE---LDSPRDLMVTASSETSISLI 216
Query: 194 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 253
WT PI Y I P G + VP + T+ ++ DL+ G EY + A
Sbjct: 217 WTKAS----GPIDHYRITFTPSSGISSEV-TVPRDRTSYTLTDLEPGAEYIISITAERGR 271
Query: 254 GPGEPSKASA 263
S A
Sbjct: 272 QQSLESTVDA 281
Score = 116 bits (292), Expect = 2e-28
Identities = 35/296 (11%), Positives = 83/296 (28%), Gaps = 48/296 (16%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 1384
D P V ++ + W PP+ + +++ G + P +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRAK----VDFILLKYGLVGGEGGKTTFRLQPPLSQY 70
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
+V L G Y + AV S+ ++ +++ V +
Sbjct: 71 SVQALRPGSRYEVSISAVRGTNESDASSTQFTT-----------EIDAPKNLRVGSRTAT 119
Query: 1445 SIHVPFMAFPQPAAFWFANDSIID------------DSDTRVHKQLTMNSASLVVKNSQR 1492
S+ + W +++ + + + + +
Sbjct: 120 SLDL----------EWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVP 169
Query: 1493 SDGGQYRLQLK--NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGS 1550
G +Y + + + + + P +L + S++L WT
Sbjct: 170 --GTEYGVGISAVMNSK-QSIPATMNARTELDSPRDLMVTASSETSISLIWTKAS----G 222
Query: 1551 EITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
I +Y + + T + + +L G+ Y + AE S +
Sbjct: 223 PIDHYRITFTPSSGISSEVTVPRDRTSYT-LTDLEPGAEYIISITAERGRQQSLES 277
Score = 115 bits (290), Expect = 3e-28
Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 16/189 (8%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYD 547
P + V +V+ + W P +L Y + + + T+ Y
Sbjct: 15 IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQ--YS 71
Query: 548 VPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLA 607
V L Y + AV ESD T TT DAP+ V +DL
Sbjct: 72 VQALRPGSRYEVSISAVRGTNESDASSTQFTTE-------IDAPKNLRVGSRTATSLDLE 124
Query: 608 WKPPLNDGGSPITDYIIQKKEKGNPYWMNAL--EVPANKTDVKIPDLTKGQEYEFRVIAV 665
W + +Y + + L + T + DL G EY + AV
Sbjct: 125 WDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAV 180
Query: 666 NEAGPSEPS 674
+ S P+
Sbjct: 181 MNSKQSIPA 189
Score = 110 bits (276), Expect = 2e-26
Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 17/193 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P + +++ + +EW PR +L Y + E G+ +
Sbjct: 15 IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLV--GGEGGKTTFRLQPPLSQYS 71
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 193
+ L G Y + AV ES S D P V +DLE
Sbjct: 72 VQALRPGSRYEVSISAVRGTNESDA----SSTQFTTE---IDAPKNLRVGSRTATSLDLE 124
Query: 194 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP---ANITATSVPDLKEGEEYEFRVIAV 250
W + + +Y + G +VP T T++ DL G EY + AV
Sbjct: 125 WDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAV 180
Query: 251 NKGGPGEPSKASA 263
P+ +A
Sbjct: 181 MNSKQSIPATMNA 193
Score = 98.0 bits (244), Expect = 3e-22
Identities = 41/379 (10%), Positives = 79/379 (20%), Gaps = 157/379 (41%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
D P V ++ + W P V
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWT------------------------------PPRAKV-- 42
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+ +++ + GG + P +V
Sbjct: 43 --------------------------DFILLKYGLV--GGEGGKTTFRLQPPLSQYSVQA 74
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIV 993
L G+ YE + A S+ +T+
Sbjct: 75 LRPGSRYEVSISAVRGTNESDASSTQFTT------------------------------- 103
Query: 994 DGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSD 1053
DAP V + +S+ L W+
Sbjct: 104 ------------EIDAPKNLRVGSRTATSLDLEWDNSE---------------------- 129
Query: 1054 ITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA---YDVFGLETNR 1110
+ Y V A + ++ + L
Sbjct: 130 ------------------AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGT 171
Query: 1111 QYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDG 1170
+Y + A S P ++ A+ T D P + + +L+W +
Sbjct: 172 EYGVGISAVMNSKQSIPA----TMNAR---TELDSPRDLMVTASSETSISLIWTKAS--- 221
Query: 1171 GSKIQGYKVEFRSTRTATD 1189
I Y++ F + +
Sbjct: 222 -GPIDHYRITFTPSSGISS 239
Score = 91.8 bits (228), Expect = 5e-20
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 14/163 (8%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P + + + + WTPPR + Y + + T + + +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPP--LSQYS- 71
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLV 1640
V+ L GS YE + A S + T AP + T S+ L
Sbjct: 72 VQALRPGSRYEVSISAVRGTNESDASST-------QFTTEIDAPKNLRVGSRTATSLDLE 124
Query: 1641 WSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
W + Q Y V ++ +++ + + + K T
Sbjct: 125 WDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163
Score = 80.2 bits (198), Expect = 3e-16
Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 8/156 (5%)
Query: 427 SRYIIEMAEYGLDNWKTV---PGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
Y + + + + V G P T+ L G +Y I S P
Sbjct: 133 QEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMN 192
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
+ P L V+ ++ S L W PI HY I S +
Sbjct: 193 ARTELDSPRD-LMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGISSEVTVPRDR 247
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
Y + L EY+ + A +S T
Sbjct: 248 TSYTLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283
Score = 78.7 bits (194), Expect = 1e-15
Identities = 31/150 (20%), Positives = 45/150 (30%), Gaps = 18/150 (12%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF-- 1578
P+NL SL L W +E Y V + +V
Sbjct: 105 IDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT 160
Query: 1579 -VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSI 1637
+ +L G+ Y + A S PA + +P S+E SI
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIPATM-------NARTELDSPRDLMVTASSETSI 213
Query: 1638 SLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
SL+W+K PI Y + S
Sbjct: 214 SLIWTKAS----GPIDHYRITFTPSSGISS 239
Score = 76.4 bits (188), Expect = 7e-15
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 570 SDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEK 629
S + + D P + V+D + + W PP + + +++
Sbjct: 2 SPGISGGGGGIP-----VIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLV 52
Query: 630 GNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
G + + + L G YE + AV S+ S
Sbjct: 53 GGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS 97
Score = 76.4 bits (188), Expect = 9e-15
Identities = 45/315 (14%), Positives = 71/315 (22%), Gaps = 142/315 (45%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
+ D P+ +V T S+ L W + A + Y V G+ VP
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPT 159
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
T ++ DL
Sbjct: 160 TKTTL-----------------------------TDLV---------------------- 168
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQI 992
GT Y + A S P T T
Sbjct: 169 ---PGTEYGVGISAVMNSKQSIPATMNA--------------RT---------------- 195
Query: 993 VDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVS 1052
D+P VT S +S+SL W +
Sbjct: 196 -------------ELDSPRDLMVTASSETSISLIWTKAS--------------------- 221
Query: 1053 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQY 1112
PI +Y + + ++G S+++ +Y + LE +Y
Sbjct: 222 -------------------GPIDHYRIT-FTPSSGISSEVTVPRDRTSYTLTDLEPGAEY 261
Query: 1113 RFRVRAENQYGVSEP 1127
+ AE S
Sbjct: 262 IISITAERGRQQSLE 276
Score = 47.1 bits (112), Expect = 3e-05
Identities = 21/146 (14%), Positives = 31/146 (21%), Gaps = 62/146 (42%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
D P V ++ S++L W I Y + G + V VP +
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKASGP----IDHYRITFTPSSGIS---SEVTVPRDRTS 249
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y + DL
Sbjct: 250 ----------------------------YTLT--DLE----------------------- 256
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTK 959
G Y + AE + S T
Sbjct: 257 --PGAEYIISITAERGRQQSLESTVD 280
Score = 37.5 bits (87), Expect = 0.035
Identities = 8/57 (14%), Positives = 17/57 (29%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y + + +Y + L G +Y + A+ S S+
Sbjct: 224 IDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280
Score = 36.3 bits (84), Expect = 0.095
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 1878 YVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
Y E + + + + L+ G +Y + A + S P++ +
Sbjct: 139 YSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMN 192
Score = 35.9 bits (83), Expect = 0.12
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
V P D ++ + W+ PR + + +++ L+ + P +
Sbjct: 14 VIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQ 69
Score = 35.2 bits (81), Expect = 0.24
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 1882 VAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ + Y V +L G YE + A S SST
Sbjct: 51 LVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQ 100
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 156 bits (396), Expect = 3e-40
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 7/196 (3%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 1745
HY + + +G G FG V + TG+ A K + ++ IR+EI + HP
Sbjct: 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+I L+ ++ ++ E++SGGELF+ I ++ E E +Q+ V + H
Sbjct: 77 HIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCHRH 135
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREP-V 1864
++H D+KPEN++ N K+ DFGL+ + E ++ S G+ +AAPE++
Sbjct: 136 MVVHRDLKPENVLLDAHM--NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYA 193
Query: 1865 GFYTDMWAVGVLAYVL 1880
G D+W+ GV+ Y L
Sbjct: 194 GPEVDIWSSGVILYAL 209
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 146 bits (371), Expect = 4e-40
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 16/186 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
D P EV+ + +++SL W P Y + G+ P + +F
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKK-NEMEIPVDSTSF 60
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
+ L G +Y ++A KP+ P+ IT++S T+
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIK-------GSTVVGSPKGISFSDITENSATV 113
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNE 1404
SW PP+ +R+ Y V G + +V + L G +Y +I+V
Sbjct: 114 SWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKG 169
Query: 1405 AGNSEP 1410
SEP
Sbjct: 170 FEESEP 175
Score = 131 bits (332), Expect = 7e-35
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 16/190 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P+ L+ S+ T+++ +L WR P Y + + + V T
Sbjct: 7 LDNPKD-LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPVDSTSFI 61
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 193
L G +Y + A +S P I P + +D ++ +
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTT----IKGSTV---VGSPKGISFSDITENSATVS 114
Query: 194 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 253
WTPP+ S + Y + P G V + T T + L G +Y +I+V
Sbjct: 115 WTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGF 170
Query: 254 GPGEPSKASA 263
EP
Sbjct: 171 EESEPISGIL 180
Score = 123 bits (310), Expect = 6e-32
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 17/191 (8%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFY 546
P+ LEVS+ T+ + L WR PV Y + + S S +
Sbjct: 6 DLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNEMEIPVDSTSF 60
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDL 606
+ L EY + A +S +TV +P+ + D E+ +
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV-------VGSPKGISFSDITENSATV 113
Query: 607 AWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVN 666
+W PP S + Y + N + V +KT K+ L G +Y +I+V
Sbjct: 114 SWTPPR----SRVDSYRVSYVPITGG-TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVK 168
Query: 667 EAGPSEPSDAS 677
SEP
Sbjct: 169 GFEESEPISGI 179
Score = 104 bits (262), Expect = 2e-25
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
P+ L+VSD T + SL W+ P+ + Y + Y S +G +++ V S
Sbjct: 4 GTDLDNPKD-LEVSDPTETTLSLRWRRPV----AKFDRYRLT-YVSPSGKKNEMEIPVDS 57
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNN 1158
++ + GL+ +Y + AE S+P + S TV P D N+
Sbjct: 58 TSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS-------TVVGSPKGISFSDITENS 110
Query: 1159 ATLMWDRPRTDGGSKIQGYKVEFRSTR 1185
AT+ W PR S++ Y+V +
Sbjct: 111 ATVSWTPPR----SRVDSYRVSYVPIT 133
Score = 91.0 bits (226), Expect = 1e-20
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 36/195 (18%)
Query: 1134 ITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLG 1193
I A T D P ++ D +L W RP +K Y++ + S
Sbjct: 1 INAG---TDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSP--------S 45
Query: 1194 YQQCHADVGQTPHGWWLQD------------SRIQGRIQSP-----FDPPDAPSQPEVTG 1236
++ ++ + L+ + P +P +
Sbjct: 46 GKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSD 105
Query: 1237 YSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYE 1296
+ +S +++W PP + + Y V G + + L G Y
Sbjct: 106 ITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYN 161
Query: 1297 FRVIAINEAGPGKPS 1311
+I++ +P
Sbjct: 162 VNIISVKGFEESEPI 176
Score = 90.2 bits (224), Expect = 2e-20
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 19/163 (11%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P++L + +L+L W P ++ Y + + ++ V +
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGK-KNEMEIPVDSTSFI 61
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLV 1640
+R L G+ Y ++AE SKP V G+P D TE+S ++
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTTI-------KGSTVVGSPKGISFSDITENSATVS 114
Query: 1641 WSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
W+ PR S + Y V I+ ++ + + +
Sbjct: 115 WTPPR----SRVDSYRVSYVPITGGTP---NVVTVDGSKTRTK 150
Score = 84.4 bits (209), Expect = 2e-18
Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 427 SRYIIE-MAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP 485
RY + ++ G N +P F ++GL G +Y + E S+P
Sbjct: 35 DRYRLTYVSPSGKKNEMEIPV--DSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-L 544
P+G + S++T+ S +SW P + + Y + + I+ GT + + S
Sbjct: 93 TVVGSPKG-ISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKT 147
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDA 590
+ +L+ +Y + +V ES+ + T D+
Sbjct: 148 RTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT-------ALDS 186
Score = 71.7 bits (176), Expect = 5e-14
Identities = 30/244 (12%), Positives = 54/244 (22%), Gaps = 94/244 (38%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y + + + + L GT Y + AE + S+P T K
Sbjct: 36 RYRLTYVSPSGK----KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKG 91
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
V +P + +
Sbjct: 92 STV-------------------------------------------VGSPKGISFSDITE 108
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
+S +++W PP S + +Y V
Sbjct: 109 NSATVSWTPPR----------------------------------------SRVDSYRVS 128
Query: 1081 KYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1140
G + ++ + L Y + + + SEP+ S K
Sbjct: 129 YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI----SGILK--- 181
Query: 1141 TVPD 1144
T D
Sbjct: 182 TALD 185
Score = 66.3 bits (162), Expect = 4e-12
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
D P V+D + + L W P + +Y + G + +P + T+
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM-EIPVDSTSFI 61
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 264
+ L G EY ++A +P+
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92
Score = 64.4 bits (157), Expect = 2e-11
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 1513 LHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSS 1572
++ P+ + + +S T+ WTPPR S + +Y V V+
Sbjct: 87 TTIKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTV 142
Query: 1573 YVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ ++ L G Y +++ + S+P
Sbjct: 143 DGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI 176
Score = 50.5 bits (121), Expect = 1e-06
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P+ IT++S T+SW PP+ +R+ Y V G + +V
Sbjct: 95 VGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTK 150
Query: 874 L 874
L
Sbjct: 151 L 151
Score = 48.2 bits (115), Expect = 5e-06
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
D P+ +V T+ +++L WR P A+ Y + G + +PV +
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKK-NEMEIPVDSTSF 60
Query: 873 TL 874
L
Sbjct: 61 IL 62
Score = 38.2 bits (89), Expect = 0.011
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 1874 GVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
Y L + + + V ++I+ L G +Y + A+ SKP++
Sbjct: 33 KFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIK 90
Score = 36.3 bits (84), Expect = 0.059
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ L+ G DY + + S+P S
Sbjct: 148 RTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
Score = 33.2 bits (76), Expect = 0.54
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
P + D TE ++SL W +P + RY + S K
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKN 49
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 150 bits (381), Expect = 6e-40
Identities = 58/198 (29%), Positives = 106/198 (53%), Gaps = 10/198 (5%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
+ ++I+ E+G GAFG V++ + ++TG + AAK I E E EI+I+ HP +
Sbjct: 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI 78
Query: 1748 INLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNI 1807
+ L A+ D ++ ++ EF GG + + D ++E ++ RQ+ EA+ +H K I
Sbjct: 79 VKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRI 138
Query: 1808 IHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPV- 1864
IH D+K N++ T ++++ DFG++ K + K + GT + APE+V E +
Sbjct: 139 IHRDLKAGNVLM-TLEG-DIRLADFGVSAKNL-KTLQKRDSFIGTPYWMAPEVVMCETMK 195
Query: 1865 ----GFYTDMWAVGVLAY 1878
+ D+W++G+
Sbjct: 196 DTPYDYKADIWSLGITLI 213
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB:
1x5k_A
Length = 211
Score = 146 bits (369), Expect = 1e-39
Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 16/205 (7%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPA---NHGGRPITGYYVEKRERGGEWLRANNYPTTN 1281
P P + + S ++ + W + + Y V + + N T
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKP-DPPEAPKV--DRIT 1338
L++ V L+ YEF V+ S + P PP+ V
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT---AHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 1339 KDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPV--HTVGNLSEGEEY 1395
++ ++W+PP G +I GYI+ + D PV H + L+ Y
Sbjct: 121 PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPY 179
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVE 1420
F++ A N G S V
Sbjct: 180 YFKIQARNSKGMGPM---SEAVQFR 201
Score = 106 bits (267), Expect = 7e-26
Identities = 36/206 (17%), Positives = 60/206 (29%), Gaps = 20/206 (9%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 130
PP G ++ S ++ + + W + TD +Y V + + T
Sbjct: 5 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK-NANAT 62
Query: 131 YTRAE--NLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDW 185
L Y F V S+ T + P + +
Sbjct: 63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT---TFELVPTSPPKDVTVVSKEG 119
Query: 186 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEGEE 242
+ + W PP + G I+ YII + V N + +L
Sbjct: 120 KPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTP 178
Query: 243 YEFRVIAVNKGGPGEPSKASAPVTCK 268
Y F++ A N G G S V +
Sbjct: 179 YYFKIQARNSKGMGPM---SEAVQFR 201
Score = 106 bits (266), Expect = 9e-26
Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 8/195 (4%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWR---VPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS- 543
PP G ++ S ++ ++ +++W +P +Y + +
Sbjct: 5 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF 603
L Y V L Y F V S T T P K+
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 123
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA--LEVPANKTDVKIPDLTKGQEYEFR 661
+ + W+PP G IT YII N + V N+ +I +LT Y F+
Sbjct: 124 IIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
Query: 662 VIAVNEAGPSEPSDA 676
+ A N G S+A
Sbjct: 183 IQARNSKGMGPMSEA 197
Score = 99.9 bits (249), Expect = 2e-23
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP 1577
PP + A + D++ + W + ++ Y V K ++ TT
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAP---KGVDSTE 1634
V L + YEF VM S + VP +P +
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS---MTAHGTTFELVPTSPPKDVTVVSKEGKP 121
Query: 1635 DSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
+I + W P G I YI+ + + + + L +
Sbjct: 122 KTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 169
Score = 83.7 bits (207), Expect = 6e-18
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 11/154 (7%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPL---DDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
PP G + S ++ ++ ++W + Y V + ++ +
Sbjct: 5 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNN 1158
+Y V GL+ N Y F V S + VP P + V
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 1159 AT---LMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+ W P G KI GY + + + A
Sbjct: 121 PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEI 153
Score = 70.6 bits (173), Expect = 2e-13
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 11/152 (7%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF---- 484
Y + N K + V GL Y F + +S
Sbjct: 42 YTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 101
Query: 485 PDKPSPPEGPLEVS--NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV 542
P+ P + V ++ ++W+ P + G I YII D +
Sbjct: 102 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEP 160
Query: 543 ----SLFYDVPRLIHRKEYLFRVKAVNSIGES 570
L + + L Y F+++A NS G
Sbjct: 161 VVGNRLTHQIQELTLDTPYYFKIQARNSKGMG 192
Score = 70.2 bits (172), Expect = 3e-13
Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 18/170 (10%)
Query: 177 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P + D + + W K + Y + K K A +
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNV 293
V LK YEF V+ S + P +P KD+ + + +
Sbjct: 68 VTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELVP--TSPPKDVTVVSKEGKPK 122
Query: 294 EIQFIGEPPPEVT----------WTIDGKELKTDSVRTTVTSIGYHTIVN 333
I +PP E T E+ + V + H I
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQE 172
Score = 67.9 bits (166), Expect = 2e-12
Identities = 33/317 (10%), Positives = 67/317 (21%), Gaps = 130/317 (41%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP + ++ D++ ++W
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNS----------------------------------- 29
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
L + +K Y + + + + V
Sbjct: 30 ----------LPKHQKITDSR------YYTVRWKT---NIPANTKYKNANATTLSYLVTG 70
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIV 993
L T YEF V + S
Sbjct: 71 LKPNTLYEFSVMVTKGRRSSTW-------------------------------------- 92
Query: 994 DGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSD 1053
+ P +P P V++ +
Sbjct: 93 -SMTAHGTTFELVPTSP---------PKDVTVV------------------------SKE 118
Query: 1054 ITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA---YDVFGLETNR 1110
P++ ++W+PP + G IT Y++ + + L +
Sbjct: 119 GKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDT 177
Query: 1111 QYRFRVRAENQYGVSEP 1127
Y F+++A N G+
Sbjct: 178 PYYFKIQARNSKGMGPM 194
Score = 52.5 bits (126), Expect = 3e-07
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 1523 PPENLH--ADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP--- 1577
PP+++ + E ++ + W PP + G +IT Y++ +
Sbjct: 108 PPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRL 166
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
+++ L + + Y F++ A N G+
Sbjct: 167 THQIQELTLDTPYYFKIQARNSKGMGPM 194
Score = 42.5 bits (100), Expect = 5e-04
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 62/153 (40%)
Query: 815 DPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
PP+ V ++ ++W+PP
Sbjct: 107 SPPKDVTVVSKEGKPKTIIVNWQPPSEA-------------------------------- 134
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
+GK+ GY+I + + V +
Sbjct: 135 -----------------NGKIT------GYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQ 171
Query: 933 RLLEGTTYEFRVRAENLQGLSEP-----ITTKE 960
L T Y F+++A N +G+ T +
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 204
Score = 35.5 bits (82), Expect = 0.11
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
+ + ++ +T ++ AN +Y+V L YEF V S S T+
Sbjct: 43 TVRWKTNIPANTKYKNAN---ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT 99
Score = 32.5 bits (74), Expect = 1.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
T+ + L Y F+++A+N+ G S
Sbjct: 167 THQIQELTLDTPYYFKIQARNSKGMGPMSEA 197
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 152 bits (386), Expect = 2e-39
Identities = 67/275 (24%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 1615 KHPFDVPGAPGAPK-GVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMA 1673
+ D P V++ D + ++ + + SP++R EK ++ +W K +
Sbjct: 11 QFILDGPAQTNGQCFSVETLLDILICLYDECNN---SPLRR---EKNILEYLEWAKPFTS 64
Query: 1674 HIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK---E 1730
+ L + ++IL+ IG GAFG V + + +FA K + L++
Sbjct: 65 KVKQMRLHR-----EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETA 119
Query: 1731 LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVIN 1790
R+E D++ + LH AF+DD+ + L+ ++ GG+L ++ + ++ E
Sbjct: 120 CFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARF 179
Query: 1791 YMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST-- 1848
Y+ ++ A+ +H+ + +H D+KP+NI+ + ++++ DFG KL + V+ S
Sbjct: 180 YLAEMVIAIDSVHQLHYVHRDIKPDNILMD--MNGHIRLADFGSCLKLMEDGTVQSSVAV 237
Query: 1849 GTAEFAAPEIVEREPVGF--YT---DMWAVGVLAY 1878
GT ++ +PEI++ G Y D W++GV Y
Sbjct: 238 GTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMY 272
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 148 bits (375), Expect = 3e-39
Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK------------------- 1729
Y + +EIG G++GVV +A K + + +
Sbjct: 14 QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGC 73
Query: 1730 -------ELIRKEIDIMNQLHHPKLINLHDAFED--DDEMVLIFEFLSGGELFERITAPD 1780
E + +EI I+ +L HP ++ L + +D +D + ++FE ++ G + E T
Sbjct: 74 IQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK- 132
Query: 1781 YKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKL-D 1839
+SE + Y + + + ++++H + IIH D+KP N++ ++K+ DFG++ +
Sbjct: 133 -PLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDG--HIKIADFGVSNEFKG 189
Query: 1840 PNEVVKISTGTAEFAAPEIV---EREPVGFYTDMWAVGVLAYVL 1880
+ ++ + GT F APE + + G D+WA+GV Y
Sbjct: 190 SDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCF 233
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 151 bits (383), Expect = 3e-39
Identities = 59/200 (29%), Positives = 108/200 (54%), Gaps = 13/200 (6%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK---ELIRKEIDIMNQLHH 1744
+ Y++++ IG GAFG V R + T ++A K + +++ +E DIM +
Sbjct: 69 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS 128
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
P ++ L AF+DD + ++ E++ GG+L ++ +Y + E Y +V A+ +H
Sbjct: 129 PWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLALDAIHS 186
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVERE 1862
IH DVKP+N++ S ++K+ DFG K++ +V+ T GT ++ +PE+++ +
Sbjct: 187 MGFIHRDVKPDNMLLD--KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ 244
Query: 1863 P-VGFYT---DMWAVGVLAY 1878
G+Y D W+VGV Y
Sbjct: 245 GGDGYYGRECDWWSVGVFLY 264
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A*
2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 153 bits (388), Expect = 6e-39
Identities = 50/277 (18%), Positives = 79/277 (28%), Gaps = 29/277 (10%)
Query: 1154 WDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDS 1213
++ P + +E + G +C + P
Sbjct: 271 YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDP----- 325
Query: 1214 RIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLR 1273
P P + + V L W PP + GGR Y V + E
Sbjct: 326 -----ASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGE 380
Query: 1274 ANN-----------YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQ 1322
+ T + TV DL Y F V A N S+ +
Sbjct: 381 CGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRS---FRTASV 437
Query: 1323 KRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 1382
P +++ + S+++SW P R+ Y V RKKG N
Sbjct: 438 SINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNS-YNVRRTEGF 495
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
T+ +L+ Y +V A+ + G G S
Sbjct: 496 SVTLDDLAPDTTYLVQVQALTQEG---QGAGSKVHEF 529
Score = 136 bits (343), Expect = 3e-33
Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 18/244 (7%)
Query: 39 QTGIVRVNCVDCLDRTNTAQFAVGKCALALQWLHIPSPPEGPLKP-SNITKSSCNLEWRA 97
+ + + + PP P + + L W
Sbjct: 296 LECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTP 355
Query: 98 PRDDGGTDILHYVVE--KMDMETGRWVPMGD----------VSGTYTRAENLIEGHDYNF 145
P+D GG + + Y V + E+G P ++ T +L +Y F
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTF 415
Query: 146 RVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPI 205
V+A N + + P + + + + W+ P +
Sbjct: 416 TVEARNGVSGLVT---SRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RV 471
Query: 206 SQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 265
+Y + + K + + ++ DL Y +V A+ + G G SK
Sbjct: 472 WKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQ 530
Query: 266 TCKP 269
T P
Sbjct: 531 TLSP 534
Score = 135 bits (341), Expect = 5e-33
Identities = 49/296 (16%), Positives = 88/296 (29%), Gaps = 40/296 (13%)
Query: 410 PVLHCRGN---HLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVF 466
P +HC + +PI + + + G + + C FF +
Sbjct: 248 PRMHCAVDGEWLVPIGQC--------LCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 467 RIRTENMYGASE----------PLDPLFPDKPSPPEGPLEV-SNVTKESCKLSWRVPVDD 515
+ GA+ P DP PP P + + +L W P D
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359
Query: 516 GGAPILHYIIE--KMDISRGTWSDAGMTV----------SLFYDVPRLIHRKEYLFRVKA 563
GG + Y + + G +V V L Y F V+A
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEA 419
Query: 564 VNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYI 623
N + T+++ + P K ++ + ++W P + Y
Sbjct: 420 RNGVSGL---VTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYE 475
Query: 624 IQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
+ ++KG+ N + DL Y +V A+ + G S +
Sbjct: 476 VTYRKKGDSNSYNVRRTEGFSVTLD--DLAPDTTYLVQVQALTQEGQGAGSKVHEF 529
Score = 119 bits (300), Expect = 8e-28
Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 17/235 (7%)
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
A + D+ S + + + +++ S G + +
Sbjct: 268 QAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPAS 327
Query: 1516 RVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKD-----------YNS 1564
RP + G + L WTPP+D+GG E Y V + S
Sbjct: 328 MPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEAS 387
Query: 1565 TVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAP 1624
+++ +T V V +L Y F V A N + + P
Sbjct: 388 VRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTS---RSFRTASVSINQTEP 444
Query: 1625 GAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
+ + S+S+ WS P + +Y V R D ++ S
Sbjct: 445 PKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNS--YNVRRTEGFS 496
Score = 118 bits (297), Expect = 2e-27
Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 33/211 (15%)
Query: 1134 ITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLG 1193
A P T P L W P+ GG + Y V +
Sbjct: 324 DPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESG---E 380
Query: 1194 YQQCHADVGQTPHGWWLQDSR--IQG---------RIQ-----------------SPFDP 1225
C A V + L + + ++ S
Sbjct: 381 CGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSIN 440
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFT 1285
P + + G S +S+S++W+ P + Y V R++G N T + T
Sbjct: 441 QTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNS-YNVRRTEGFSVT 498
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
+ DL Y +V A+ + G G SK +
Sbjct: 499 LDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529
Score = 109 bits (274), Expect = 1e-24
Identities = 49/431 (11%), Positives = 82/431 (19%), Gaps = 134/431 (31%)
Query: 697 DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSD 756
+ AG ++ + G P + +DG+ L + + GY K D
Sbjct: 227 SLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLV--PIGQCLCQAGYE--------KVED 276
Query: 757 SGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDP 816
+ E P+H S ++ +P
Sbjct: 277 ACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCE-CEEGFFRAPQDPASMPCTRPPS 335
Query: 817 PEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLS 876
V L W PP+ GG Y V + +
Sbjct: 336 APHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPE------------------ 377
Query: 877 IGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLE 936
+ TV L
Sbjct: 378 ----------------------------SGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409
Query: 937 GTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGK 996
Y F V A N +
Sbjct: 410 HMNYTFTVEARNGVSGLVT---------------------------------------SR 430
Query: 997 PVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITP 1056
S P + + G S +S+S++W+ P
Sbjct: 431 SFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS--------------------- 469
Query: 1057 ESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRV 1116
+ Y V + + + L + Y +V
Sbjct: 470 ----------------RVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDLAPDTTYLVQV 512
Query: 1117 RAENQYGVSEP 1127
+A Q G
Sbjct: 513 QALTQEGQGAG 523
Score = 101 bits (251), Expect = 9e-22
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 16/158 (10%)
Query: 1037 PITDKPSPPQGPLDV-SDITPESCSLSWKPPLDDGGSPITNYVVEKYE-----------S 1084
PP P + + L W PP D GG Y V +
Sbjct: 326 ASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCE 385
Query: 1085 ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPD 1144
A+ +S+ + + V LE + Y F V A N + +
Sbjct: 386 ASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS---VSINQT 442
Query: 1145 PPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
P + ++ T + ++ W P ++ Y+V +R
Sbjct: 443 EPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYR 479
Score = 83.7 bits (206), Expect = 3e-16
Identities = 34/195 (17%), Positives = 48/195 (24%), Gaps = 16/195 (8%)
Query: 1246 WNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEA 1305
W P G+ + EK E + + + E E
Sbjct: 258 WLVPI---GQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCEC 314
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G P D + P V L W PP+ GG Y V
Sbjct: 315 EEGFFRAPQDPASMPCTR--PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCE 372
Query: 1366 KKGGD-----WVDANSVPVPNPV------HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQS 1414
+ + +A+ P TV +L YTF V A N +
Sbjct: 373 QCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSF 432
Query: 1415 GPVIVEEQPNKPVMD 1429
V +P
Sbjct: 433 RTASVSINQTEPPKV 447
Score = 71.0 bits (173), Expect = 3e-12
Identities = 31/218 (14%), Positives = 52/218 (23%), Gaps = 29/218 (13%)
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILH------YIIEKMDISRGTWSD 537
FP+ + + P S T + V G P +H +++ +
Sbjct: 216 FPETIAGSDAP---SLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYE 272
Query: 538 AGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETT----------KTTVARNEFDE 587
++ S T+ A
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTR 332
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWM----------NA 637
P + V+L W PP + GG Y + ++ +
Sbjct: 333 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 392
Query: 638 LEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+T V + DL Y F V A N S
Sbjct: 393 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSR 430
Score = 68.7 bits (167), Expect = 1e-11
Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 216
A P RP V+L WTPP+ GG Y + + +
Sbjct: 322 PQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGEC 381
Query: 217 ---GPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 271
+ P +T TS V DL+ Y F V A N S++ +
Sbjct: 382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQ 441
Query: 272 VAPKIKT 278
P
Sbjct: 442 TEPPKVR 448
Score = 66.0 bits (160), Expect = 1e-10
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 1497 QYRLQLKNPAGFDTATLHVRVL---DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
+ ++ +N + R P + + + SL++ W+ P +
Sbjct: 414 TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVW 472
Query: 1554 NYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
Y V + + V V + +LA +TY +V A Q G
Sbjct: 473 KYEVTYRKKGDSNSYNVRR-TEGFSVTLDDLAPDTTYLVQVQALTQEGQGAG 523
Score = 46.7 bits (110), Expect = 9e-05
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
V Y + + + N + + + L Y +V+A G S
Sbjct: 471 VWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
Score = 37.8 bits (87), Expect = 0.041
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 1896 VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPKFPLHS 1941
+ + V L +Y F V+A+N S + + +
Sbjct: 397 LTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT 442
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 150 bits (381), Expect = 6e-39
Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK---ELIRKEIDIMNQLHH 1744
D ++IL+ IG GAF V + ++TG ++A K + L++ R+E D++
Sbjct: 61 DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR 120
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
+ LH AF+D++ + L+ E+ GG+L ++ ++ Y+ ++ A+ +H
Sbjct: 121 RWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHR 180
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVERE 1862
+H D+KP+NI+ ++++ DFG KL + V+ GT ++ +PEI++
Sbjct: 181 LGYVHRDIKPDNILLD--RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAV 238
Query: 1863 ----PVGFYT---DMWAVGVLAY 1878
G Y D WA+GV AY
Sbjct: 239 GGGPGTGSYGPECDWWALGVFAY 261
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 146 bits (370), Expect = 1e-38
Identities = 47/291 (16%), Positives = 85/291 (29%), Gaps = 37/291 (12%)
Query: 1143 PDPPGQPQIVDWDTN----NATLMWDR-PRTDGGSKIQGYKVEFRS----------TRTA 1187
P +D L+W P + KI Y+V T
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATK 64
Query: 1188 TDCGLGYQQCHADVG-QTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAW 1246
L + A + + G + + I + P + + + W
Sbjct: 65 LTVNLTNDRYLATLTVRNLVGKS-DAAVLT--IPACDFQATHPVMDLKAFPKDNMLWVEW 121
Query: 1247 NPPANHGGRPITGYYVEKRERGG------EWLRANNYPTTNLNFTVHDLREGGKYEFRVI 1300
P + Y +E +W + + T + + +L E Y V
Sbjct: 122 TTPRE----SVKKYILEWCVLSDKAPCITDWQQED--GTVHRTYLRGNLAESKCYLITVT 175
Query: 1301 AINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRP-PKHDGGARIKG 1359
+ GPG P K+ P + ++ K+ L W P I+
Sbjct: 176 PVYADGPGSPESIK--AYLKQA--PPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRN 231
Query: 1360 YIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
Y + R G+ N V + +T+ +L+ Y R+ A + G +
Sbjct: 232 YTIFYRTIIGNETAVN-VDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 281
Score = 133 bits (337), Expect = 2e-34
Identities = 45/301 (14%), Positives = 76/301 (25%), Gaps = 48/301 (15%)
Query: 1044 PPQGPLDV-------SDITPESCSLSWKP-PLDDGGSPITNYVVEKYESATGFWSKLSSF 1095
P + L WK P + I +Y V + +
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN----- 57
Query: 1096 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
A + TN +Y + N G S+ +T P
Sbjct: 58 YTVNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPK 113
Query: 1156 TNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDS-- 1213
N + W PR ++ Y +E+ C +QQ T H +L+ +
Sbjct: 114 DNMLWVEWTTPRES----VKKYILEWCVLSDKAPCITDWQQ----EDGTVHRTYLRGNLA 165
Query: 1214 -------RIQGR------------IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGG 1254
+ PP + L W+
Sbjct: 166 ESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQ 225
Query: 1255 R-PITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKP 1313
I Y + R G N +++ +T+ L Y R+ A + G +
Sbjct: 226 NGFIRNYTIFYRTIIGNETAV-NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 284
Query: 1314 T 1314
T
Sbjct: 285 T 285
Score = 118 bits (298), Expect = 4e-29
Identities = 42/255 (16%), Positives = 75/255 (29%), Gaps = 17/255 (6%)
Query: 428 RYIIEMAEYGLDNWK-TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
Y + + + TV + +Y+ + N+ G S+ P
Sbjct: 43 DYEVTLTRWKSHLQNYTVNAT------KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPA 96
Query: 487 KPSPPEGPLEV--SNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI-SRGTWSDAGMTVS 543
P+ + + W P + IL + + W TV
Sbjct: 97 CDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVH 156
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF 603
Y L K YL V V + G + P K G++
Sbjct: 157 RTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYL----KQAPPSKGPTVRTKKVGKNE 212
Query: 604 VDLAWKP-PLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRV 662
L W P++ I +Y I + A+ V ++ T+ + LT Y R+
Sbjct: 213 AVLEWDQLPVDVQNGFIRNYTIFYRTIIG--NETAVNVDSSHTEYTLSSLTSDTLYMVRM 270
Query: 663 IAVNEAGPSEPSDAS 677
A + G + + +
Sbjct: 271 AAYTDEGGKDGPEFT 285
Score = 104 bits (261), Expect = 3e-24
Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 23/199 (11%)
Query: 76 PPEGP-----LKPSNITKS-SCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVS 128
P + P + PS+ + L W+ P + IL Y V ++ + +
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYT 59
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 188
T+ + Y + N +G+S + +T + P +
Sbjct: 60 VNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPKDN 115
Query: 189 HVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYE 244
+ +EWT P++ + +YI+E + +L E + Y
Sbjct: 116 MLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 171
Query: 245 FRVIAVNKGGPGEPSKASA 263
V V GPG P A
Sbjct: 172 ITVTPVYADGPGSPESIKA 190
Score = 92.2 bits (229), Expect = 4e-20
Identities = 45/291 (15%), Positives = 78/291 (26%), Gaps = 34/291 (11%)
Query: 1328 PPEAPKVDRITK-------DSVTLSWRP-PKHDGGARIKGYIVQKRKKGGDWVDANSVPV 1379
P +AP +V L W+ P + +I Y V + + V
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---QNYTV 60
Query: 1380 PNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVK 1439
TV + Y + N G S+ + P + Q PVMDL
Sbjct: 61 NATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPA-CDFQATHPVMDLKAFPKDN-- 115
Query: 1440 AGEDFSIHVPFMAFPQPAA----FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDG 1495
+ V + + W S T ++ + + N
Sbjct: 116 -----MLWVEWTTPRESVKKYILEWC-VLSDKAPCITDWQQEDGTVHRTYLRGNLAE--S 167
Query: 1496 GQY--RLQLKNPAGF-DTATLHVRVL-DRPHPPENLHADEFAGDSLTLYWTP-PRDNGGS 1550
Y + G ++ + P + + + L W P D
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG 227
Query: 1551 EITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
I NY + + T + + +L + Y R+ A G
Sbjct: 228 FIRNYTIFYRTIIGNETAVNVDSSHTEYT-LSSLTSDTLYMVRMAAYTDEG 277
Score = 89.9 bits (223), Expect = 3e-19
Identities = 43/360 (11%), Positives = 76/360 (21%), Gaps = 118/360 (32%)
Query: 807 EAVKSRKPDPPEAPKVDRITKD-SVTLSWRP-PKHDGGARIKGYIVQKRKKGGDWVDANS 864
E S+ P +V L W+ P + +I Y V + +
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---QN 57
Query: 865 VPVPNPVHTLL--------------SIGY-----LSQFLAEEKKHGKLLLAKVE------ 899
V T+ +G L+ + + ++ K
Sbjct: 58 YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNML 117
Query: 900 -----------NGYVIEKRDLTHGGGWVPAVNHVSPYDHHA-TVPRLLEGTTYEFRVRAE 947
Y++E L+ + H L E Y V
Sbjct: 118 WVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPV 177
Query: 948 NLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPP 1007
G P + + A PP
Sbjct: 178 YADGPGSP----------------------------------------ESIKAYLKQAPP 197
Query: 1008 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPL 1067
+ L W+ P+
Sbjct: 198 SKGPTVRTKKVGKNEAVLEWDQ-----------------------------------LPV 222
Query: 1068 DDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
D I NY + Y + G + ++ Y + L ++ Y R+ A G +
Sbjct: 223 DVQNGFIRNYTIF-YRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 281
Score = 89.5 bits (222), Expect = 3e-19
Identities = 31/197 (15%), Positives = 58/197 (29%), Gaps = 20/197 (10%)
Query: 486 DKPS-PPEGPLEV---SNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGM 540
D+PS P ++ + +L W+ +P + IL Y + +
Sbjct: 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVN 61
Query: 541 TVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWG 600
L ++ YL + N +G+SD T + P
Sbjct: 62 ATKLTVNLT----NDRYLATLTVRNLVGKSDAAVLTIPA----CDFQATHPVMDLKAFPK 113
Query: 601 EDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA---LEVPANKTDVKIPDLTKGQE 657
++ + + W P + YI++ + E +L + +
Sbjct: 114 DNMLWVEWTTP----RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC 169
Query: 658 YEFRVIAVNEAGPSEPS 674
Y V V GP P
Sbjct: 170 YLITVTPVYADGPGSPE 186
Score = 87.2 bits (216), Expect = 2e-18
Identities = 34/285 (11%), Positives = 55/285 (19%), Gaps = 89/285 (31%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y + + + L Y + NL G S+
Sbjct: 43 DYEVTLTRWKSHLQNYTV--------NATKLTVNLTNDRYLATLTVRNLVGKSDA----- 89
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
+ + P
Sbjct: 90 -----------------------------------AVLTIPACDFQATHPVMDLKAFPKD 114
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
+ + + W P + + L W D
Sbjct: 115 NMLWVEWTTP-----------RESVKKYI-----------LEWCVLSDKAPCITD----- 147
Query: 1081 KYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1140
W + V Y L ++ Y V G P SI A
Sbjct: 148 --------WQQEDGTVHR-TYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQ 194
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGG-SKIQGYKVEFRST 1184
P + N A L WD+ D I+ Y + +R+
Sbjct: 195 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 239
Score = 81.8 bits (202), Expect = 1e-16
Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 23/196 (11%)
Query: 1497 QYRLQLKNPAGF-DTATLHVRVLDRP--HPPENLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
L ++N G D A L + D HP +L A + L + WT PR+ +
Sbjct: 75 LATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKA-FPKDNMLWVEWTTPRE----SVK 129
Query: 1554 NYVVE-----KKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
Y++E K T W + V NLA Y V G P
Sbjct: 130 KYILEWCVLSDKAPCITDWQQEDGTVHR-TYLRGNLAESKCYLITVTPVYADGPGSPE-- 186
Query: 1609 IDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSK-PRHDGGSPIQRYIVEKRLISDDKW 1667
IKA P + ++ L W + P I+ Y + R I ++
Sbjct: 187 --SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET 244
Query: 1668 IKASMAHIPDTSLKYT 1683
++ + +YT
Sbjct: 245 AV----NVDSSHTEYT 256
Score = 77.5 bits (191), Expect = 4e-15
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 14/145 (9%)
Query: 1536 SLTLYWTP-PRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
++ L W P +I +Y V + S + T ++ Y +
Sbjct: 24 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN-----YTVNATKLTVNLTNDRYLATL 78
Query: 1595 MAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQR 1654
N G S A + P ++ + + W+ PR +++
Sbjct: 79 TVRNLVGKSDAA----VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR----ESVKK 130
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTS 1679
YI+E ++SD T
Sbjct: 131 YILEWCVLSDKAPCITDWQQEDGTV 155
Score = 69.1 bits (169), Expect = 2e-12
Identities = 36/159 (22%), Positives = 52/159 (32%), Gaps = 9/159 (5%)
Query: 429 YIIE-----MAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
YI+E + +W+ G + L E K Y+ + G P
Sbjct: 131 YILEWCVLSDKAPCITDWQQEDGT-VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 189
Query: 484 FPDKPSPPEGP--LEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGM 540
K +PP + V K L W +PVD I +Y I I +
Sbjct: 190 AYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD 249
Query: 541 TVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ Y + L Y+ R+ A G D E T TT
Sbjct: 250 SSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 288
Score = 68.7 bits (168), Expect = 3e-12
Identities = 45/269 (16%), Positives = 70/269 (26%), Gaps = 47/269 (17%)
Query: 600 GEDFVDLAWKP-PLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEY 658
G V L WK P + I DY + + V A K V + + Y
Sbjct: 21 GYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN--YTVNATKLTVNLTN----DRY 74
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 718
+ N G SDA+ + + K +
Sbjct: 75 LATLTVRNLVGK---SDAAVLTI-PACDFQATHPVMDLKAFPKDNMLW------------ 118
Query: 719 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG---SF 775
V WT + +K + V S I + + TY E
Sbjct: 119 -VEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG-----NLAESKCYLI 172
Query: 776 TIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWR 835
T+ P G+ I +K P + ++ K+ L W
Sbjct: 173 TVTP------VYADGP--------GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWD 218
Query: 836 P-PKHDGGARIKGYIVQKRKKGGDWVDAN 863
P I+ Y + R G+ N
Sbjct: 219 QLPVDVQNGFIRNYTIFYRTIIGNETAVN 247
Score = 34.0 bits (78), Expect = 0.48
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
TY+ +L + Y V A G P S
Sbjct: 158 TYLRGNLAESKCYLITVTPVYADGPGSPESIK 189
Score = 32.5 bits (74), Expect = 1.6
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPK 1936
Y + SL Y R+ A G + PK
Sbjct: 254 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 290
Score = 31.3 bits (71), Expect = 3.1
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 1899 PTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ L Y + +N G S + +
Sbjct: 61 NATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT 93
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor,
LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A*
1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A*
2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A*
3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 145 bits (369), Expect = 2e-38
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 23/204 (11%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEI-------DI 1738
+ + + +G G+F V RE T +A K LEK I ++ D+
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKI------LEKRHIIKENKVPYVTRERDV 83
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEA 1798
M++L HP + L+ F+DD+++ + GEL + I E Y ++ A
Sbjct: 84 MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSA 142
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST----GTAEFA 1854
++++H K IIH D+KPENI+ ++++ DFG A K+ E + GTA++
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNEDM--HIQITDFGTA-KVLSPESKQARANSFVGTAQYV 199
Query: 1855 APEIVEREPVGFYTDMWAVGVLAY 1878
+PE++ + +D+WA+G + Y
Sbjct: 200 SPELLTEKSACKSSDLWALGCIIY 223
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal
eight IG domains...; immunoglobulin domain; HET: NAG NDG;
4.19A {Drosophila melanogaster}
Length = 816
Score = 155 bits (392), Expect = 3e-38
Identities = 61/376 (16%), Positives = 100/376 (26%), Gaps = 100/376 (26%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
A I P + G+ FTC+ T++W + + +
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------------- 385
Query: 2068 FYSSLRKLQIDRFSIQDT--------------------SFDRRQAAPRFVIKPQSAFCYE 2107
S L+I+ +D R P Q
Sbjct: 386 --HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEP 443
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA-----GDDYTFVINRTKMEDRG 2162
G SV C TP ++W + +++ + ++ I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 2163 EYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN---------------KYDVIW 2207
Y A++ G E LNV Y LP I + ++W
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNV---YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVW 560
Query: 2208 LHNNKEIKPSNDFAYSSVAHVHTLKIAEI-FPEDSGVYTCEAFNDEGESFS-SCTLLVQ- 2264
+N+ + + V TL I + D YTC A N EG S S + V
Sbjct: 561 ERDNRALPINRKQ---KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Query: 2265 ----------------------------------VSWYKDGNPVSDDPATYQFTQIGQTY 2290
+ W DG +S+D +
Sbjct: 618 LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS 677
Query: 2291 KMKILSTTLDDVGQYS 2306
+ I + G ++
Sbjct: 678 VLTIEAVEASHAGNFT 693
Score = 147 bits (372), Expect = 8e-36
Identities = 51/379 (13%), Positives = 99/379 (26%), Gaps = 90/379 (23%)
Query: 1999 IQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
+ + K ++ C P W+ + +
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRK---- 292
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQDT--------------SFDRR---QAAPRFVIKPQ 2101
+ + L I ++D+ S + A I P
Sbjct: 293 -QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 351
Query: 2102 SAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
+ G+ FTC+ T++W + + + S + I K ED+
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDK 401
Query: 2162 GEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD----------------V 2205
G Y N E L + ++D PVI + +
Sbjct: 402 GMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEI 461
Query: 2206 IWLHNNKEIKPSN-----DFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCT 2260
W + K+I ++ + + V L I + D G+Y C A + G + S
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521
Query: 2261 LLVQ--------------------------------VSWYKDGNPVSDDPATYQFTQIGQ 2288
L V + W +D + + ++
Sbjct: 522 LNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR----KQKVFP 577
Query: 2289 TYKMKILSTTLD-DVGQYS 2306
+ I + + D Y+
Sbjct: 578 NGTLIIENVERNSDQATYT 596
Score = 142 bits (359), Expect = 4e-34
Identities = 58/393 (14%), Positives = 107/393 (27%), Gaps = 82/393 (20%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
R P Q G SV C TP ++W + +++ + RY Y
Sbjct: 426 RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN----DRYQVGQY 481
Query: 2067 TFYSSLRK--LQIDRFSIQDT---------SFDRRQA-------APRFVIKPQSAFCYEG 2108
+ L I D + ++ + + G
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAG 541
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINR-TKMEDRGEYIIR 2167
+++ TC V ++ W +N+ L + K + T +I + D+ Y
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNGTLIIENVERNSDQATYTCV 598
Query: 2168 AENHYGYREEV-VFLNVQ--------RKYDLPVIHYKNHR---RANKYD----VIWLHNN 2211
A+N GY + + V + P + D + W +
Sbjct: 599 AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDG 658
Query: 2212 KEIKPSNDFAYSSVAH-VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ------ 2264
+ I S V L I + +G +TC A N G + L V
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWI 718
Query: 2265 ---------------------------VSWYKDGNPVSDD--PATYQFTQIGQTYKMKIL 2295
V+W K + + + +
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVD 778
Query: 2296 STTLDDVGQYS--AQ--MGGIIAAFSLNVVKES 2324
+ + G Y A +G ++A + V+
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
Score = 133 bits (337), Expect = 1e-31
Identities = 65/397 (16%), Positives = 105/397 (26%), Gaps = 96/397 (24%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIA---TPTLTWFHNNQELK-QSVKFMKRY---- 2061
A + G S C + + ++W + +E ++ +Y
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 2062 ----------AGDDYTFYS---------SLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQS 2102
D Y Y R + + K
Sbjct: 198 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDM 257
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL--KQSVKFMKRYAGDDYTFVINRTKMED 2160
++ C P W+ + KQ+V R T +I +ED
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 317
Query: 2161 RGEYIIRAENHYGYREEVVFLNVQ----RKYDLPVIHYKNHRRAN---------KYDVIW 2207
G+Y+ N G L V K D P R A V W
Sbjct: 318 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 377
Query: 2208 LHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV---- 2263
+ + K I S L+I + ED G+Y C ND + +S L +
Sbjct: 378 MKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF 427
Query: 2264 --------------------------------QVSWYKDGNPVSDDP----ATYQFTQIG 2287
++SW DG ++++ Y
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 2288 QTYKMKILSTTLDDVGQYS--A--QMGGIIAAFSLNV 2320
+ I S +D G Y A ++G + LNV
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Score = 125 bits (314), Expect = 8e-29
Identities = 55/407 (13%), Positives = 90/407 (22%), Gaps = 113/407 (27%)
Query: 2008 QAAPRFVIKPQSA-FCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
Q P F+ +P + + C+ P + W ++ V
Sbjct: 36 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV--------PGL 87
Query: 2067 TFYSSLRKLQIDRFSIQDTSFDRRQ------------------------AAPRFVIKPQS 2102
SS KL F +D + A +
Sbjct: 88 RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 147
Query: 2103 AFCYEGQSVKFTCRVIAIA---TPTLTWFHNNQELK-QSVKFMKRYA-GDDYTFVINRTK 2157
G S C + + ++W + +E ++ +Y I
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 207
Query: 2158 MED-RGEYIIRAENHYGYREEV---VFLNVQRKYDL----PVIHYKNHRRANKY------ 2203
ED Y R ++ + V + V+
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMA 267
Query: 2204 -----------DVIWLHNNKEIKPSNDFAYSSVAHVH--TLKIAEIFPEDSGVYTCEAFN 2250
W + + TL I + EDSG Y C N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327
Query: 2251 DEGESFSSCTLLVQ---------------------------------VSWYKDGNPVSDD 2277
G L V VSW KDG +
Sbjct: 328 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS 387
Query: 2278 PATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
+ ++I S +D G Y A+ L +
Sbjct: 388 ESV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Score = 81.5 bits (201), Expect = 2e-15
Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 20/239 (8%)
Query: 1293 GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHD 1352
Y +A N+ G ++ + VQ + P + +TL P D
Sbjct: 593 ATY--TCVAKNQEG--YSARGSLEVQVMV-LPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Query: 1353 GGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGK 1412
I + + + + V V T+ + F A N AG+ +
Sbjct: 648 LPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF-- 705
Query: 1413 QSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII-- 1467
+ P+ V P +P D G D + FP+P W
Sbjct: 706 -TTPLNVYVPPRWILEP-------TDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPG 757
Query: 1468 DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
+ D + + + +L V N Q+++ G Y + N G + + + + H +
Sbjct: 758 EYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHHH 816
Score = 78.1 bits (192), Expect = 2e-14
Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 16/210 (7%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
++ IA ++ G +E S + V P + + + AGE + P +P
Sbjct: 504 LYKCIAKSKVGVAE---HSAKLNVYGLP-----YIRQMEKKAIVAGETLIVTCPVAGYPI 555
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR-SDGGQYRLQLKNPAGFD-TATL 1513
+ W ++ + + KQ + +L+++N +R SD Y KN G+ +L
Sbjct: 556 DSIVWERDNRALPIN----RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611
Query: 1514 HVRVLDRPH--PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVS 1571
V+V+ P P G LTL+ + P + I + + T
Sbjct: 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR 671
Query: 1572 SYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
+ + + F A N G
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 76.1 bits (187), Expect = 1e-13
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 13/150 (8%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
YT +A N+ G S + S V V P + + G+ ++H
Sbjct: 594 TYT--CVAKNQEGYSA--RGSLEVQVMVLPRIIPFAFE---EGPAQVGQYLTLHCSVPGG 646
Query: 1454 PQPAAF-WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
P W + I + ++ + L ++ + S G + +N AG T
Sbjct: 647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706
Query: 1513 LHVRVLDRP---HPPENLHADEFAGDSLTL 1539
+ V P P + + G +
Sbjct: 707 TPLNVYVPPRWILEPTDKAFAQ--GSDAKV 734
Score = 73.8 bits (181), Expect = 5e-13
Identities = 29/173 (16%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 1373 DANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSG 1432
D ++ V + ++ + ++ ++ N+ ++E S + + + + PV+
Sbjct: 380 DGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE---ASAELKLGGRFDPPVI-RQA 435
Query: 1433 VRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD-TRVHKQLTMN---SASLVVK 1488
++ T++ G + P P W + I ++D +V + +T+N + L +
Sbjct: 436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT 495
Query: 1489 NSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP--HPPENLHADEFAGDSLTL 1539
+ +DGG Y+ K+ G + + V P E G++L +
Sbjct: 496 SVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVA--GETLIV 546
Score = 68.8 bits (168), Expect = 2e-11
Identities = 38/223 (17%), Positives = 64/223 (28%), Gaps = 22/223 (9%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
A N G S + E P G+ + L P G +
Sbjct: 599 AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQV--GQY-LTLHCSVP----GGDLPLN 651
Query: 623 IIQKKEKGNP----YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASD 678
I + G + V + + I + F A N AG + + +
Sbjct: 652 IDWTLD-GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLN 710
Query: 679 IIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV 738
+ + P+ D G VE + G P P+VTW + +
Sbjct: 711 VYV------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLK- 763
Query: 739 TSIGYHTIVNT---VNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
S T N ++++ G Y E N G + ++
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
Score = 66.9 bits (163), Expect = 6e-11
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++ N ++ASA + RF P I+ ++ ++ G + ++ G P P
Sbjct: 403 MYQCFVRNDRES---AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP 459
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGS 359
E++W +DGK++ + + + V + + +D G Y ++ G E S
Sbjct: 460 EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS 519
Query: 360 FTVTVLE 366
+ V
Sbjct: 520 AKLNVYG 526
Score = 65.0 bits (158), Expect = 3e-10
Identities = 47/425 (11%), Positives = 108/425 (25%), Gaps = 96/425 (22%)
Query: 1225 PPDAPSQPE-VTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWL------RANNY 1277
+ +S + P+ + E + +
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPS-FVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 1278 PTTNLNFT-VHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDR 1336
P+ L+ V Y + + T + P+ + +
Sbjct: 197 PSGELHIREVGPEDGYKSY--QCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 1337 ITK------DSVTLSWRPPKHDGGARIKGY---IVQKRKKGGDWVDANSVPVPNPVHTVG 1387
++ L +GY + + K +V + + V V
Sbjct: 255 FDMKTYSGSSTMALL---------CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVS 305
Query: 1388 ------NLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPN---KPVMDLSGVRDITV 1438
+ + + + N G + V + P TV
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGES---VETVLTVTAPLSAKIDP-------PTQTV 355
Query: 1439 KAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQY 1498
G + P W + I S+ + L +++ ++ D G Y
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-----------SVLRIESVKKEDKGMY 404
Query: 1499 RLQLKNPAGFDTATLHVRVLDRPHPP------ENLHADEFAGDSLTL------------Y 1540
+ ++N A+ +++ R PP + + G S+ L
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEP--GPSVFLKCVAGGNPTPEIS 462
Query: 1541 WT----PPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMA 1596
W +N ++ YV D S + + ++ ++ +A
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSY-------------LNITSVHANDGGLYKCIA 509
Query: 1597 ENQYG 1601
+++ G
Sbjct: 510 KSKVG 514
Score = 64.6 bits (157), Expect = 4e-10
Identities = 46/252 (18%), Positives = 75/252 (29%), Gaps = 47/252 (18%)
Query: 128 SGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSP--ITAKDPFGRPDRPGQPT 181
TYT A N+ G SL + I P + GQ
Sbjct: 592 QATYT--------------CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL 637
Query: 182 VTDW---GKDH-VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL 237
G D ++++WT DG IS+ V + ++ +
Sbjct: 638 TLHCSVPGGDLPLNIDWT---LDG-QAISE---------DLGITTSRVGRRGSVLTIEAV 684
Query: 238 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQF 297
+ F A N G + + P+ V P+ D G VE +
Sbjct: 685 EASHAGNFTCHARNLAGHQQ---FTTPLNVY---VPPRWILEPTDKAFAQGSDAKVECKA 738
Query: 298 IGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNT---VNTKRSDSGTYHLELRNTSG 354
G P P+VTW + + S T N ++++ G Y E N G
Sbjct: 739 DGFPKPQVTWKKAVGDTPGEYKDLK-KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Query: 355 RDEGSFTVTVLE 366
+ + ++
Sbjct: 798 SGLSAVIMISVQ 809
Score = 64.2 bits (156), Expect = 4e-10
Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 629 KGNP----YWM-NALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCK 683
GNP WM + + +++ ++I + K + ++ N+ +E AS +
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE---ASAELKLG 424
Query: 684 QRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 743
RF P I+ ++ ++ G + ++ G P PE++W +DGK++ + +
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTV 484
Query: 744 HTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ V + + +D G Y ++ G E S +
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Score = 63.4 bits (154), Expect = 7e-10
Identities = 50/214 (23%), Positives = 72/214 (33%), Gaps = 41/214 (19%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G S+ L C G P P ++ W D G I+ +
Sbjct: 444 GPSVFLKCV-------AGGNP----TPEIS-WELD-------------GKKIANNDRYQV 478
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
+Y + NIT+ D G ++ IA +K G E SA +
Sbjct: 479 GQYVTVNGDVVSYLNITSVHAND--GGL---YKCIAKSKVGVAE---HSAKLNVY---GL 527
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
P I ++ I AG+ L V G P + W D + L + + V G I N
Sbjct: 528 PYI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNGTLIIEN 585
Query: 334 TVNTKRSDSGTYHLELRNTSGRD-EGSFTVTVLE 366
+ SD TY +N G GS V V+
Sbjct: 586 V--ERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 61.1 bits (148), Expect = 3e-09
Identities = 34/238 (14%), Positives = 68/238 (28%), Gaps = 33/238 (13%)
Query: 144 NFRVKAVNKIGESLP-------LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTP 196
+++ + +++ LV PI++ P + L
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSST-MALLCPA 272
Query: 197 PKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS----VPDLKEGEEYEFRVIAVNK 252
G P+ + K + ++A ++ + S + D + ++ + N
Sbjct: 273 ----QGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328
Query: 253 GGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGK 312
G +T K + G+ Q+ G P V+W DGK
Sbjct: 329 VGGES---VETVLTVT---APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 382
Query: 313 ELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISK 370
+ I + K+ D G Y +RN E S + +
Sbjct: 383 AIGHSE--------SVLRI---ESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Score = 57.3 bits (138), Expect = 6e-08
Identities = 29/169 (17%), Positives = 44/169 (26%), Gaps = 30/169 (17%)
Query: 1396 TFRVIAVNEAG------NSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVP 1449
F +A+ G N Q GPV ++E N I I
Sbjct: 13 LFAAVALIACGSQTLAANPPDADQKGPVFLKEPTN----------RIDFSNSTGAEIECK 62
Query: 1450 FMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKN------SQRSDGGQYRLQLK 1503
P P W +D + + + LV Q Y +
Sbjct: 63 ASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 1504 NPAGFD-TATLHVRVLDRPH---PPENLHADEFAGDSLTLYWTPPRDNG 1548
N G + +HVR + + H G+S + P
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIR--GNSAVIKCLIPSFVA 167
Score = 56.9 bits (137), Expect = 7e-08
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
+ I + ++ IA ++ G +E A + + P I ++ I AG+ L
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAE-HSAKLNV-----YGLPYI-RQMEKKAIVAGETL 544
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
V G P + W D + L + + V G I N + SD TY +N
Sbjct: 545 IVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNGTLIIENV--ERNSDQATYTCVAKN 601
Query: 767 TSGRDE 772
G
Sbjct: 602 QEGYSA 607
Score = 55.7 bits (134), Expect = 2e-07
Identities = 30/242 (12%), Positives = 58/242 (23%), Gaps = 39/242 (16%)
Query: 559 FRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSP 618
+ A N G + + V ++ K V G V + P +
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYYEAD--VNKEHVIR-GNSAV-IKCLIP-SFVADF 169
Query: 619 ITDYIIQKKEKGNPYWM---NALEVPANKTDVKIPDLTKGQEY-----------EFRVIA 664
+ W P + D K L G+ + ++
Sbjct: 170 VEVV----------SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 665 VNEAGPSE---PSDASDIIMCKQRFLAPKI--KTPLKDIIIKAGKILNVEIQFIGEPPPE 719
+ + +I PK+ + + G P P
Sbjct: 220 KHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV 279
Query: 720 VTWTIDGKELKTDSVRTTVTSIGYHTIVNT---VNTKRSDSGTYHLELRNTSGRDEGSFT 776
W + + V + + T + DSG Y + N+ G +
Sbjct: 280 FRWYKFIEGTTRK--QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
Query: 777 IV 778
+
Sbjct: 338 LT 339
Score = 52.6 bits (126), Expect = 1e-06
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
K + G+ Q+ G P V+W DGK + I
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------SVLRI- 393
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ K+ D G Y +RN E S +
Sbjct: 394 --ESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 51.5 bits (123), Expect = 3e-06
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 9/129 (6%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKI-KTPLKDIIIKAGKIL 706
+P+ F +A+ G + A++ Q+ P K P I
Sbjct: 2 NMPNERLKWLMLFAAVALIACG--SQTLAANPPDADQK--GPVFLKEPTNRIDFSNSTGA 57
Query: 707 NVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSIGYHTIVNTV---NTKRSDSGTYHL 762
+E + G P PE+ W DG + ++S G + + Y
Sbjct: 58 EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 117
Query: 763 ELRNTSGRD 771
RN G
Sbjct: 118 LARNQFGSI 126
Score = 51.5 bits (123), Expect = 4e-06
Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 245 FRVIAVNKGGPGE-PSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
F +A+ G + P F +K P I +E + G P P
Sbjct: 14 FAAVALIACGSQTLAANPPDADQKGPVF----LKEPTNRIDFSNSTGAEIECKASGNPMP 69
Query: 304 EVTWT-IDGKELKTDSVRTTVTSIGYHTIVNTV---NTKRSDSGTYHLELRNTSGRDEGS 359
E+ W DG + ++S G + + Y RN G S
Sbjct: 70 EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII-S 128
Query: 360 FTVTVLETISKTNTTTISS 378
V V +++ ++
Sbjct: 129 RDVHVRAVVAQYYEADVNK 147
Score = 50.3 bits (120), Expect = 7e-06
Identities = 26/216 (12%), Positives = 47/216 (21%), Gaps = 64/216 (29%)
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI--HYKNHRRANKYD------ 2204
+ +++ + A G + + PV N +
Sbjct: 3 MPNERLKWLMLFAAVALIACG-SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 2205 ---------VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPED------SGVYTCEAF 2249
+IW+ ++ ++ L ED + VY C A
Sbjct: 62 KASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 2250 NDEGESFSSCTLLV-------------------------------------QVSWYKDGN 2272
N G S + VSW+ D
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 2273 PVSDDPATYQF-TQIGQTYKMKILSTTL-DDVGQYS 2306
A Y + + ++ I D Y
Sbjct: 181 ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 216
Score = 40.3 bits (94), Expect = 0.008
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 16/135 (11%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEI-QFIGE 300
+ +A N+ G VA + + + G ++ I F+ +
Sbjct: 114 VYACLARNQFGSIISRDVHVRAV-----VAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 168
Query: 301 PPPEVTWTIDGKELKTDSV----RTTVTSIGYHTIVNTVNTKRSDS-GTYHLELRNTSGR 355
V+W D +E + V G I D +Y ++
Sbjct: 169 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI---REVGPEDGYKSYQCRTKHRLTG 225
Query: 356 DEGSFTVTVLETISK 370
+ I++
Sbjct: 226 ETRLSATKGRLVITE 240
Score = 38.0 bits (88), Expect = 0.040
Identities = 13/111 (11%), Positives = 25/111 (22%), Gaps = 40/111 (36%)
Query: 2231 LKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV--------------------------- 2263
+ + + ++ A G +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 2264 ---------QVSWYK-DGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQ 2304
++ W + DG V D P Q + G K+ +D Q
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQ 108
Score = 33.0 bits (75), Expect = 1.5
Identities = 5/61 (8%), Positives = 13/61 (21%), Gaps = 8/61 (13%)
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP------HPPENLHADEFAGDSLT 1538
+ + N + + G T + D+ P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSN--STGAE 58
Query: 1539 L 1539
+
Sbjct: 59 I 59
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 138 bits (350), Expect = 3e-38
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 1565
+G A++ ++++DRP PP+ + ++ G+++ L WTPP+D+G + IT Y ++K D S
Sbjct: 3 SGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM 62
Query: 1566 VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDP--IKAKHP 1617
W V + + L IG+ Y FRV +EN GLS+ A + A+
Sbjct: 63 EWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
Score = 126 bits (318), Expect = 7e-34
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
I D+P PPQ + + D+ E+ +L+W PP DDG + IT Y ++K + + W +
Sbjct: 14 IIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYH 72
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
+ + L +Y FRV +EN G+SE + K V G+
Sbjct: 73 RTSATITELVIGNEYYFRVFSENMCGLSED-----ATMTK-ESAVIARDGKI 118
Score = 119 bits (299), Expect = 3e-31
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPV 1383
+P PP+ K++ + ++V L+W PPK DG A I GY +QK K +W
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH-YHRTS 75
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
T+ L G EY FRV + N G SE + V + K
Sbjct: 76 ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
Score = 116 bits (293), Expect = 2e-30
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
D P P+ ++D + V L W PP +DG + IT Y IQK +K + W +E +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
I +L G EY FRV + N G SE + + R
Sbjct: 76 -ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
Score = 112 bits (283), Expect = 3e-29
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNL 1282
D P P ++ +V+L W PP + G ITGY ++K ++ EW +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT- 74
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQ 1318
+ T+ +L G +Y FRV + N G + + T
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110
Score = 109 bits (274), Expect = 7e-28
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK-PKYGPWEKACIVPANIT 230
RP P + D ++V L WTPPK DG + I+ Y I+K K W +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 231 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
AT + +L G EY FRV + N G E + + R
Sbjct: 76 AT-ITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
Score = 105 bits (263), Expect = 2e-26
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-SL 544
D+P PP +++ +V E+ L+W P DDG A I Y I+K D W
Sbjct: 16 DRPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTK--TTVARN 583
+ L+ EY FRV + N G S+ TK +AR+
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 100 bits (250), Expect = 1e-24
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTY 131
P PP +K ++ + L W P+DDG I Y ++K D ++ W + + T
Sbjct: 17 RPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVC--QSPITAKDP 170
L+ G++Y FRV + N G S +S + A+D
Sbjct: 76 ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
Score = 71.6 bits (176), Expect = 9e-15
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVP 866
+P PP+ K++ + ++V L+W PPK DG A I GY +QK K +W
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHY 71
Score = 69.3 bits (170), Expect = 6e-14
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
+ Y I+ A+ W TV + T+ L G +Y FR+ +ENM G SE
Sbjct: 50 TGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKES 109
Query: 487 KPSPPEG 493
+G
Sbjct: 110 AVIARDG 116
Score = 67.4 bits (165), Expect = 3e-13
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
D PG P K D ++++L W+ P+ DG + I Y ++K +W H T
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVI-EHYHRT 74
Query: 1679 S 1679
S
Sbjct: 75 S 75
Score = 64.7 bits (158), Expect = 3e-12
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP--ITT 958
GY I+K D W + H AT+ L+ G Y FRV +EN+ GLSE +T
Sbjct: 51 GYTIQKAD-KKSMEWFTVIEHYH--RTSATITELVIGNEYYFRVFSENMCGLSEDATMTK 107
Query: 959 KEPVVAKN 966
+ V+A++
Sbjct: 108 ESAVIARD 115
Score = 57.8 bits (140), Expect = 7e-10
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
P PP +I D N L W P+ DG + I GY ++ ++
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Score = 54.3 bits (131), Expect = 1e-08
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 1875 VLAYVLDVAEDTN--WRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+ Y + A+ + W ++ + + L+ G++Y FRV ++N G S+ ++ +K
Sbjct: 49 ITGYTIQKADKKSMEWFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTK 107
Query: 1933 ERP 1935
E
Sbjct: 108 ESA 110
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 145 bits (367), Expect = 4e-38
Identities = 47/300 (15%), Positives = 86/300 (28%), Gaps = 54/300 (18%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ PRF+ +P+ G F C+ P +TW +++ +
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 2068 FYSSLRKLQIDR-FSIQDT------------------------SFDRRQAAPRFVIKPQS 2102
L+I + +D P + PQ
Sbjct: 64 V------LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRG 2162
++ C P +TWF + + S + I ++ D+G
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 2163 EYIIRAENHYGYRE-EVVFLNVQRKYDLPVIHY--KNHRRANKYDVI------------- 2206
+Y A N G R L V+ + P +H +V
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV 237
Query: 2207 -WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
W+ +++ P +D V + +DS YTC A + G + + V+
Sbjct: 238 KWMQGAEDLTPEDDM------PVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 122 bits (308), Expect = 2e-30
Identities = 46/294 (15%), Positives = 76/294 (25%), Gaps = 70/294 (23%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ PRF+ +P+ G F C+ P +TW +++ +
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 2151 F--VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYD----LPVIHYKNHR------ 2198
+ D Y A+N G L V R+ P I
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 2199 -------RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
A+ ++ W + + PS L+I D G Y C A
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 2249 FNDEGESFSSCTLLV-------------------------------------QVSWYKDG 2271
N G +SS L V W +
Sbjct: 184 TNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA 243
Query: 2272 NPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLNVV 2321
++ + +G+ + T + D Y+ G I A + V
Sbjct: 244 EDLTPE----DDMPVGR---NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 102 bits (256), Expect = 2e-23
Identities = 41/214 (19%), Positives = 61/214 (28%), Gaps = 37/214 (17%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
P + PQ ++ C P +TWF + + S +
Sbjct: 103 QLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR 162
Query: 2065 DYTFYSSLRKLQIDRFSIQDT------------SFDRRQA---------APRFVIKPQSA 2103
LQI+ D A APRF I P S
Sbjct: 163 SGA-------LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH 215
Query: 2104 FCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGE 2163
G +V TC + P + W ++L V+ T ++D
Sbjct: 216 EIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP------VGRNVLELTDVKDSAN 269
Query: 2164 YIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNH 2197
Y A + G E V + V+ LP K+H
Sbjct: 270 YTCVAMSSLGVIEAVAQITVK---SLPKAGTKHH 300
Score = 67.2 bits (164), Expect = 1e-11
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+A N G S A+ V + + VAP+ I G +N+ +G P P V W
Sbjct: 182 VATNSAGVRYSSPANLYV--RVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++L + +G + + T DS Y ++ G E +TV
Sbjct: 240 MQGAEDLTPEDDMP----VGRNVL---ELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 63.3 bits (154), Expect = 2e-10
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
P+ KD I +G + + Q G+P P VTW GK++ + T +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 332 VNTVNTKR-SDSGTYHLELRNTSGRDEGSFTVTVLETISKTNT 373
+ + D Y +N+ G +TVL +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG 107
Score = 62.9 bits (153), Expect = 3e-10
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 20/156 (12%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMD---LSGVRDITVKAGEDFSIHVPFMA 1452
+ +A N G + V + P G + V+ ++
Sbjct: 78 VYECVAQNSVGEI---TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134
Query: 1453 FPQPAAFWFANDSIIDDS--DTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--- 1507
P P WF + +D S + R+ + + S +L +++S+ +D G+Y N AG
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQ---LRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 1508 FDTATLHVRVLDRP----HPPENLHADEFAGDSLTL 1539
A L+VRV + P + G ++ +
Sbjct: 192 SSPANLYVRVQNVAPRFSILPMSHEIMP--GGNVNI 225
Score = 59.8 bits (145), Expect = 3e-09
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+I + + ++ +A N AG S A+ + + + +AP+ I G +N
Sbjct: 167 QIESSEETDQGKYECVATNSAGVRYSSPANLYV--RVQNVAPRFSILPMSHEIMPGGNVN 224
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
+ +G P P V W ++L + +G + + T DS Y ++
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVL---ELTDVKDSANYTCVAMSS 277
Query: 768 SGRDEGSFTIV 778
G E I
Sbjct: 278 LGVIEAVAQIT 288
Score = 59.8 bits (145), Expect = 3e-09
Identities = 22/129 (17%), Positives = 34/129 (26%), Gaps = 10/129 (7%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
+A N AG + V Q P + G + +I + P P
Sbjct: 182 VATNSAGVRY--SSPANLYVRVQNVAPRF-SILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Query: 1460 WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
W + D M V++ + D Y + G A + V
Sbjct: 239 WMQGAEDLTPEDD-------MPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Query: 1520 RPHPPENLH 1528
P H
Sbjct: 292 LPKAGTKHH 300
Score = 56.4 bits (136), Expect = 4e-08
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P+ KD I +G + + Q G+P P VTW GK++ + T ++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 748 NTVNTKR-SDSGTYHLELRNTSGRDEGSFTI 777
+ D Y +N+ G +
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKL 96
Score = 51.0 bits (122), Expect = 2e-06
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 5/126 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRF--VAPKIKTPLKDIIIKAGKILNVEIQFIGEP 301
+ +A N G A V + + P I + +++ + + G P
Sbjct: 78 VYECVAQNSVGEIT-VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 302 PPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG-RDEGSF 360
PE+TW D + + + + + +++ +D G Y N++G R
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIE-SSEETDQGKYECVATNSAGVRYSSPA 195
Query: 361 TVTVLE 366
+ V
Sbjct: 196 NLYVRV 201
Score = 50.2 bits (120), Expect = 4e-06
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 13/117 (11%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR- 1492
+D +G S P+P W ++ + A L ++ +
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTP 73
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPH----------PPENLHADEFAGDSLTL 1539
D Y +N G T + VL P+ + + T+
Sbjct: 74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER--TRTATM 128
Score = 48.7 bits (116), Expect = 1e-05
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFL--APKIKTPLKDIIIKAGKILNVEIQFIGEP 716
+ +A N G A ++ + + P I + +++ + + G P
Sbjct: 78 VYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 717 PPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
PE+TW D + + + + + +++ +D G Y N++G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIE-SSEETDQGKYECVATNSAGVRY 191
Score = 32.9 bits (75), Expect = 1.2
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILST-TLDDVGQYS--AQ--MGGIIAAFSL 2318
+V+W K G V+ ++I T D Y AQ +G I L
Sbjct: 37 RVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKL 96
Query: 2319 NVVKES 2324
V++E
Sbjct: 97 TVLRED 102
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 148 bits (374), Expect = 4e-38
Identities = 71/397 (17%), Positives = 108/397 (27%), Gaps = 96/397 (24%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ + FV +P A G +V C + P + W + L DD
Sbjct: 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG--------MDDR 70
Query: 2067 TFYSSLRKLQIDRFSIQDTSFD------------------------RRQAAPRFVIKPQS 2102
L I RF+ + +S
Sbjct: 71 KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES 130
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRG 2162
+ G +V C VI PT+ W N Q+L + I+R + D G
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSG 190
Query: 2163 EYIIRAENHYGYREEV-VFLNVQRKYDLPVIHYKNHRRANKY------------------ 2203
Y A N R + + L Y R +N
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 2204 -DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
WL + I+ + S+ L I+ + +DSG YTC +S L
Sbjct: 251 PSFTWLRGEEVIQLRSK--KYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308
Query: 2263 VQ---------------------------------VSWYKDGNPVSDDPATYQFTQIGQT 2289
V V+W K+G+ V + QI
Sbjct: 309 VLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD----YFQIVGG 364
Query: 2290 YKMKILSTTLDDVGQY----SAQMGGIIAAFSLNVVK 2322
++IL D G Y + G ++ L V K
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 100 bits (251), Expect = 3e-22
Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 29/196 (14%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
F+ +P + EG+ C V P+ TW + ++
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR--------SKK 268
Query: 2066 YTFYSSLRKLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQSAFCYEG 2108
Y+ L I + D+ + P F+ P + + YE
Sbjct: 269 YSLLGG-SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYES 327
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
++F C V PT+ W N + S F I D G Y A
Sbjct: 328 MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVA 384
Query: 2169 ENHYGYREEVVFLNVQ 2184
EN G + L V
Sbjct: 385 ENEAGNAQSSAQLIVP 400
Score = 70.6 bits (173), Expect = 2e-12
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 12/149 (8%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQP--NKPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
+R A N A V + P ++ + L ++ G+D + +
Sbjct: 191 VYRCSARNPASTRT--GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY 248
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
P P+ W + +I + + ++L++ N D G Y + +A+
Sbjct: 249 PPPSFTWLRGEEVIQLRSKKYS---LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 1514 HVRVLDRPH---PPENLHADEFAGDSLTL 1539
+ VL P P NL+A E +
Sbjct: 306 ELTVLVPPWFLNHPSNLYAYE--SMDIEF 332
Score = 61.0 bits (148), Expect = 2e-09
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 4/124 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPR-FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPP 302
+R A N ++A + P ++I GK +E G PP
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 303 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
P TW + ++ S + ++ I N DSGTY + + S +
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLI---SNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 363 TVLE 366
TVL
Sbjct: 308 TVLV 311
Score = 60.6 bits (147), Expect = 3e-09
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ K ASA +T V P ++ + E G+P P V W
Sbjct: 293 VVTYKNEN---ISASAELTVL---VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNW 346
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+G + + I+ V +SD G Y N +G + S + V +
Sbjct: 347 MKNGDVVIPSD-YFQIVGGSNLRILGVV---KSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 58.3 bits (141), Expect = 1e-08
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 17/123 (13%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+ + N S + V P N P ++ D P P
Sbjct: 293 VVTYKNENIS---ASAELTVLVPPWFLNHP-------SNLYAYESMDIEFECAVSGKPVP 342
Query: 1457 AAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVR 1516
W N ++ SD + ++L + +SD G Y+ +N AG ++ +
Sbjct: 343 TVNWMKNGDVVIPSD-YFQ---IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Query: 1517 VLD 1519
V
Sbjct: 399 VPK 401
Score = 58.3 bits (141), Expect = 1e-08
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
IT G+ + + P P W N ++ + + + S +L + Q
Sbjct: 129 ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD-SRVVVLPSGALQISRLQPG 187
Query: 1494 DGGQYRLQLKNPAGFDTA-TLHVRVLDRP---------HPPENLHADEFAGDSLTL 1539
D G YR +NPA T VR+L P P N+ A E G L
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE--GKDAVL 241
Score = 56.4 bits (136), Expect = 6e-08
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCK-QRFLAPKIKTPLKDIIIKAGKIL 706
+I L G +R A N A ++A I+ ++I GK
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
+E G PPP TW + ++ S + ++ I N DSGTY +
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLI---SNVTDDDSGTYTCVVTY 296
Query: 767 TSGRDEGS 774
+ S
Sbjct: 297 KNENISAS 304
Score = 54.5 bits (131), Expect = 2e-07
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK--TDSVRTTVTSIGYH 329
+ + + I G + ++ + IG+P P + W + ++L R V G
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSG-RDEGSFTVTVLE 366
I + DSG Y RN + R V +L
Sbjct: 180 QI---SRLQPGDSGVYRCSARNPASTRTGNEAEVRILS 214
Score = 51.4 bits (123), Expect = 2e-06
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK--TDSVRTTVTSIGYHT 745
+ + + I G + ++ + IG+P P + W + ++L R V G
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGS 774
I + DSG Y RN + G+
Sbjct: 181 I---SRLQPGDSGVYRCSARNPASTRTGN 206
Score = 51.0 bits (122), Expect = 3e-06
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P ++ + E G+P P V W +G + + I+
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD-YFQIVGGSNLRIL 370
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGS 774
V +SD G Y N +G + S
Sbjct: 371 GVV---KSDEGFYQCVAENEAGNAQSS 394
Score = 49.1 bits (117), Expect = 1e-05
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 4/98 (4%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWTIDGKELKTD-SVRTTVTSIGY 328
+ + D + G + + + P + W DG L R G
Sbjct: 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78
Query: 329 HTI--VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
I + + D G Y E S T V
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
Score = 45.6 bits (108), Expect = 2e-04
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 4/94 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWTIDGKELKTD-SVRTTVTSIGYHT 745
+ + D + G + + + P + W DG L R G
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 746 I--VNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
I + + D G Y E S T
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Score = 41.7 bits (98), Expect = 0.003
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 26/152 (17%)
Query: 1401 AVNEAGNSE----PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQ 1455
+E +S G + V E P D G + ++
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSE----P-------SDAVTMRGGNVLLNCSAESDRGV 51
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNS---ASLVVKNSQRSDGGQYRLQLKNPAGFD--- 1509
P W + I+ +QL S +++ + D G Y+ +
Sbjct: 52 PVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111
Query: 1510 -TATLHVRVLDR-PHPPENLHADEFAGDSLTL 1539
TA + V R E++ A GD++ L
Sbjct: 112 RTAKVMVAGPLRFLSQTESITAFM--GDTVLL 141
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein
complex, transferase metal protein complex, nucleus; HET:
ANP; 2.65A {Homo sapiens}
Length = 305
Score = 145 bits (367), Expect = 5e-38
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQLHH 1744
Y + + +G G++G V + +T A K + + ++KEI ++ +L H
Sbjct: 6 KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH 65
Query: 1745 PKLINLHD--AFEDDDEMVLIFEFLSGG--ELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+I L D E+ +M ++ E+ G E+ + + P+ + + Y Q+ + ++
Sbjct: 66 KNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSV--PEKRFPVCQAHGYFCQLIDGLE 123
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP---NEVVKISTGTAEFAAPE 1857
++H + I+H D+KP N++ T +K+ G+A L P ++ + S G+ F PE
Sbjct: 124 YLHSQGIVHKDIKPGNLLLTTGG--TLKISALGVAEALHPFAADDTCRTSQGSPAFQPPE 181
Query: 1858 IV--EREPVGFYTDMWAVGVLAYVL 1880
I GF D+W+ GV Y +
Sbjct: 182 IANGLDTFSGFKVDIWSAGVTLYNI 206
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 144 bits (364), Expect = 1e-37
Identities = 53/192 (27%), Positives = 109/192 (56%), Gaps = 7/192 (3%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
+ +D+LE++G G++G V++ ++TG I A K +PV +L++ I KEI IM Q P +
Sbjct: 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQE--IIKEISIMQQCDSPHV 86
Query: 1748 INLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNI 1807
+ + ++ + ++ ++ E+ G + + I + ++E E+ ++ + ++++H
Sbjct: 87 VKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRK 146
Query: 1808 IHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPVG 1865
IH D+K NI+ T + K+ DFG+A +L + + K +T GT + APE+++
Sbjct: 147 IHRDIKAGNILLNTEG--HAKLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYN 203
Query: 1866 FYTDMWAVGVLA 1877
D+W++G+ A
Sbjct: 204 CVADIWSLGITA 215
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 143 bits (363), Expect = 1e-37
Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPK 1746
+ + LE+IG G+FG V + + +T + A K I + E E I++EI +++Q P
Sbjct: 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 81
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
+ + ++ D ++ +I E+L GG + + + E ++ +R++ + + ++H +
Sbjct: 82 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLHSEK 139
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPV 1864
IH D+K N++ VK+ DFG+A +L + +K +T GT + APE++++
Sbjct: 140 KIHRDIKAANVL--LSEHGEVKLADFGVAGQLT-DTQIKRNTFVGTPFWMAPEVIKQSAY 196
Query: 1865 GFYTDMWAVGVLAY 1878
D+W++G+ A
Sbjct: 197 DSKADIWSLGITAI 210
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 142 bits (360), Expect = 2e-37
Identities = 49/298 (16%), Positives = 84/298 (28%), Gaps = 51/298 (17%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
A + I G+S FTC I + +++ + + + + G
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR- 61
Query: 2069 YSSLRKLQIDRFSIQDT---------SFDRRQ---------AAPRFVIKPQSAFCYEGQS 2110
L I +I+D + + Q F +G+
Sbjct: 62 ------LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 115
Query: 2111 VKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN 2170
+ CRV + P ++W ++N+E+ + + I D G Y
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDN-RFAMLANNNLQILNINKSDEGIYRCEGRV 174
Query: 2171 HY-GYREEVVFLNVQRKYDLPVIHYKNHRRANKY-------------------DVIWLHN 2210
G + + + P I + N + W N
Sbjct: 175 EARGEIDFRDIIVIVNVP--PAIS-MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 231
Query: 2211 NKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWY 2268
K I+ + Y L + I D G Y C A N GE L V V +
Sbjct: 232 GKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 129 bits (325), Expect = 1e-32
Identities = 47/288 (16%), Positives = 93/288 (32%), Gaps = 65/288 (22%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
A + I G+S FTC I + +++ + + + + G
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEV-VFLNVQRKYDLPVI--HYKNHR---------- 2198
I +ED G Y +A + G +E V L + +K
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK---LTFREVVSPQEFKQGEDAEVV 119
Query: 2199 -RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
R + V WL++N+E+ +D ++ +A+ + L+I I D G+Y CE +
Sbjct: 120 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARG 178
Query: 2255 SFSSCTLLV-------------------------------------QVSWYKDGNPVSDD 2277
++V +SW+++G + ++
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238
Query: 2278 PATYQFTQIGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLNVV 2321
++ G ++ + + D G Y + G L V
Sbjct: 239 E---KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 106 bits (265), Expect = 8e-25
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 34/208 (16%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
F +G+ + CRV + P ++W ++N+E+ ++
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-- 153
Query: 2068 FYSSLRKLQIDRFSIQDT-------------SFDRR------QAAPRFVI--KPQSAFCY 2106
LQI + D D R P + K +A
Sbjct: 154 ------NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE 207
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G+ + F+CR P ++WF N + ++++ K+ G + + D G Y+
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVC 265
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHY 2194
RA N G E+ FL V H+
Sbjct: 266 RATNKAGEDEKQAFLQVF---VQHHHHH 290
Score = 67.9 bits (166), Expect = 6e-12
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
+R EA E + VIV P + + T + GE+ + P+
Sbjct: 167 IYRCEGRVEARG-EIDFRDIIVIVNVPP--AISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
PA WF N +I++++ L ++ L V+N SDGG Y + N AG D +
Sbjct: 224 PAISWFRNGKLIEENE---KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Query: 1516 RVLDRPHPPEN 1526
+V + H +
Sbjct: 281 QVFVQHHHHHH 291
Score = 61.0 bits (148), Expect = 1e-09
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 245 FRVIAVNKGGPGEPSKASA--PVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPP 302
+R + GE V P P+ + + G+ + + G P
Sbjct: 168 YRCEGRVEAR-GEIDFRDIIVIVNVPPAISMPQ---KSFNATAERGEEMTFSCRASGSPE 223
Query: 303 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
P ++W +GK ++ + S T+ N SD G Y N +G DE +
Sbjct: 224 PAISWFRNGKLIEENEKYILKGSNTELTV---RNIINSDGGPYVCRATNKAGEDEKQAFL 280
Query: 363 TVLE 366
V
Sbjct: 281 QVFV 284
Score = 59.4 bits (144), Expect = 4e-09
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ + GE + P+ W+ S RV Q + L + N+
Sbjct: 12 SKVELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70
Query: 1494 DGGQYRLQLKNPAGFD-TATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
D G YR Q + G AT+ + + + + G+ +
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEV 118
Score = 56.0 bits (135), Expect = 4e-08
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
++ L + + G+ IGEP + G+++ + R V G +
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSR 61
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRD-EGSFTVTVLE 366
+ N D+G Y + + G+ E + + + +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
Score = 56.0 bits (135), Expect = 5e-08
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTP--LKDIIIKAGKI 705
+I ++ K E +R EA +I+ + P I P + + G+
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV----NVPPAISMPQKSFNATAERGEE 211
Query: 706 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELR 765
+ + G P P ++W +GK ++ + S T+ N SD G Y
Sbjct: 212 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV---RNIINSDGGPYVCRAT 268
Query: 766 NTSGRDEGSFTI 777
N +G DE +
Sbjct: 269 NKAGEDEKQAFL 280
Score = 52.1 bits (125), Expect = 9e-07
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
++ L + + G+ IGEP + G+++ + R V G + +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRL 62
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDE 772
N D+G Y + + G+ +
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQ 87
Score = 51.0 bits (122), Expect = 2e-06
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A + G + +A+ + + + + K G+ V + P P V+W
Sbjct: 78 QATDAKG--QTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 132
Query: 308 TIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTY 345
+E+ T S R + + I +N +SD G Y
Sbjct: 133 LYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIY 168
Score = 51.0 bits (122), Expect = 2e-06
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 25/151 (16%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
A + G ++ + + + + ++ K GED + + P P
Sbjct: 78 QATDAKGQTQ--EATVVLEIYQKLTFREVV-------SPQEFKQGEDAEVVCRVSSSPAP 128
Query: 1457 AAFWFAND-SIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--FDTATL 1513
A W ++ + SD R + + +L + N +SD G YR + + A D +
Sbjct: 129 AVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
Query: 1514 HVRVLDRPHP-----PENLHADEFAGDSLTL 1539
V V P N A+ G+ +T
Sbjct: 186 IVIVNVPPAISMPQKSFNATAER--GEEMTF 214
Score = 50.2 bits (120), Expect = 4e-06
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I + +R A + G ++ + I + + + K G+ V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEFKQGEDAEV 118
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTY 760
+ P P V+W +E+ T S R + + I +N +SD G Y
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIY 168
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like
D; 3.50A {Homo sapiens}
Length = 317
Score = 143 bits (361), Expect = 2e-37
Identities = 49/319 (15%), Positives = 87/319 (27%), Gaps = 73/319 (22%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
P FV + S +V C+V I + W+ + +E+ K + F
Sbjct: 7 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK---------HDF 56
Query: 2069 YSSLRKLQIDRFSIQD----------------TSFDRR-QAAPRFVIKPQSAFCYEGQSV 2111
+ L I FS +D + +A +++ +
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL 116
Query: 2112 KFTCRVIAIA----------TPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
K I + W HN ++ S + G+ IN D+
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 2162 GEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD----------------- 2204
G+Y++ + ++ V L+ Q + + + A
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 2205 -----------------VIWLHNNKEIKPSNDFA-YSSVAHVHTLKIAEIFPEDSGVYTC 2246
V WL N K + + I + DSG Y
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296
Query: 2247 EAFNDEGESFSSCTLLVQV 2265
N G S T+ V +
Sbjct: 297 VVKNKYGSETSDFTVSVFI 315
Score = 126 bits (319), Expect = 1e-31
Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 27/198 (13%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
P FV + S +V C+V I + W+ + +E+ K + T
Sbjct: 7 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTL 63
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ----------RKYDLPVIHYKNHRRAN 2201
+I +D G Y + ++ G + + L + +K L K A
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAE 123
Query: 2202 -------------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
V W HN I+ S+ L+I E P D G Y E
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 2249 FNDEGESFSSCTLLVQVS 2266
F+ + + L Q
Sbjct: 184 FDGKTGHQKTVDLSGQAY 201
Score = 98.8 bits (246), Expect = 3e-22
Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 42/219 (19%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIA----------TPTLTWFHNNQELKQSVKF 2057
+A +++ +K I + W HN ++ S +
Sbjct: 96 EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV 155
Query: 2058 MKRYAGD---------------DYTFY----------------SSLRKLQIDRFSIQDTS 2086
G+ Y + + + ++ +
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215
Query: 2087 FDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYA 2145
+ A P EG+++ TC V P ++W N + L +K A
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA 275
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
G F IN D G+Y + +N YG ++V
Sbjct: 276 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 86.5 bits (214), Expect = 6e-18
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 50/164 (30%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
++W + +EI + + TL I E +D+G+Y +D G+ S L+
Sbjct: 38 HIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95
Query: 2264 Q-------------------------------------------VSWYKDGNPVSDDPAT 2280
+ V+W +G+ +
Sbjct: 96 EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-R 154
Query: 2281 YQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSLNV 2320
+ G+ ++I T +D G+Y + G L+
Sbjct: 155 VKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Score = 74.2 bits (182), Expect = 6e-14
Identities = 28/104 (26%), Positives = 42/104 (40%)
Query: 263 APVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT 322
+ A + + I+ GK LN+ G+PPPEV+W + K L +D
Sbjct: 212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL 271
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
G +DSG Y L ++N G + FTV+V
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 71.1 bits (174), Expect = 6e-13
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 4/136 (2%)
Query: 1390 SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVP 1449
+ ++ + Q + N+ + +T++ G+ ++
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 245
Query: 1450 FMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1509
P P W N+ + D K +A + +D G+Y L +KN G +
Sbjct: 246 VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 305
Query: 1510 TATLHVRVLDRPHPPE 1525
T+ V V PE
Sbjct: 306 TSDFTVSV----FIPE 317
Score = 68.8 bits (168), Expect = 4e-12
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 662 VIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT 721
A +EA I K R A + + I+ GK LN+ G+PPPEV+
Sbjct: 198 GQAYDEAYAEFQRLKQAAIAEKNR--ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI---V 778
W + K L +D G +DSG Y L ++N G + FT+ +
Sbjct: 256 WLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Query: 779 PD 780
P+
Sbjct: 316 PE 317
Score = 59.5 bits (144), Expect = 4e-09
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIG-EPPPEVTWTIDGKELKTDSVRTTVTSIGYH 329
F P L + + ++ + + + W D +E+ D I
Sbjct: 5 FTGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
I + D+G Y + L++ G+D+ +
Sbjct: 64 LITEF---SKKDAGIYEVILKDDRGKDKSRLKLVDEA 97
Score = 55.3 bits (133), Expect = 9e-08
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 11/136 (8%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIG-EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
P L + + ++ + + + W D +E+ D I I
Sbjct: 7 GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 65
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPV------LHCRG 800
+ D+G Y + L++ G+D+ +V + K L + +
Sbjct: 66 ---TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 801 NHLPIMEAVKSRKPDP 816
+ + V D
Sbjct: 123 EGIQLYSFVTYYVEDL 138
Score = 54.9 bits (132), Expect = 1e-07
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 1396 TFRVIAVNEAGNSE-PGK---QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFM 1451
+ VI ++ G + K ++ ++ E K + + ++ + G V +
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY- 133
Query: 1452 AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
W N S I SD RV +T L + +D G+Y ++L +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 192
Query: 1512 TLHVRVLDRPHPPENL 1527
T+ +
Sbjct: 193 TVDLSGQAYDEAYAEF 208
Score = 54.5 bits (131), Expect = 2e-07
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 17/136 (12%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVE--------- 294
+ VI + G K+ + + ++ + I + L ++
Sbjct: 75 IYEVILKDDRGK---DKSRLKLVDE---AFKELMMEVCKKIALSATDLKIQSTAEGIQLY 128
Query: 295 -IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 353
+V W+ +G ++ R G + +D G Y +EL +
Sbjct: 129 SFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Query: 354 GRDEGSFTVTVLETIS 369
+ + ++
Sbjct: 188 TGHQKTVDLSGQAYDE 203
Score = 54.1 bits (130), Expect = 2e-07
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 1999 IQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
++ + + A P EG+++ TC V P ++W N + L
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQDT 2085
++ I+ S D+
Sbjct: 271 LKFEAGRT------AYFTINGVSTADS 291
Score = 51.5 bits (123), Expect = 2e-06
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 7/134 (5%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPS-----DASDIIMCKQRFLAPKIKTPLKDIIIKAG 703
I + +K + VI ++ G + +A +M + T LK G
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
L + +V W+ +G ++ R G + +D G Y +E
Sbjct: 125 IQLYSFVT-YYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVME 182
Query: 764 LRNTSGRDEGSFTI 777
L + + + +
Sbjct: 183 LFDGKTGHQKTVDL 196
Score = 47.2 bits (112), Expect = 4e-05
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 16/110 (14%)
Query: 1414 SGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDT 1472
+GP VE V + + + W+ ++ I +
Sbjct: 6 TGPHFVEYLSW------------EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE- 52
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH 1522
+L++ + D G Y + LK+ G D + L +
Sbjct: 53 --KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKE 100
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii}
PDB: 3q5z_A*
Length = 371
Score = 144 bits (365), Expect = 3e-37
Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 40/243 (16%)
Query: 1674 HIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK---E 1730
+ T S ++E + G VV R+ + FA K + + E
Sbjct: 48 NAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELE 107
Query: 1731 LIRKEIDIMNQLHH------------------------PKLINLHDAFEDDD--EMVLIF 1764
+ + +L P L +D +L+
Sbjct: 108 RLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLM 167
Query: 1765 EFLSG-----GELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMC 1819
S + + + Q+ ++ K ++H P+N+
Sbjct: 168 PAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFI 227
Query: 1820 QTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVERE--PVGFYTDMWAVGVLA 1877
+ + D K S+ +A E + + W +G+
Sbjct: 228 MPDG--RLMLGDVSALWK--VGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSI 283
Query: 1878 YVL 1880
Y +
Sbjct: 284 YRV 286
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 142 bits (358), Expect = 5e-37
Identities = 36/312 (11%), Positives = 76/312 (24%), Gaps = 60/312 (19%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
P + S+ F C +W + + S + G+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 2070 ----------------------SSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYE 2107
+S + + + V + E
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 2108 GQSVKFTCRV-IAIATPTLTWFHNNQELKQS--VKFMKRYAGDDYTFVINRTKMEDRGEY 2164
V+F + + + N +E+ + K + + + ED G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 2165 IIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY--------------------- 2203
+ ++ V L L + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 2204 -----------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
++W + +EI + + TL I E +D+G+Y +D
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVILKDDR 299
Query: 2253 GESFSSCTLLVQ 2264
G+ S L+ +
Sbjct: 300 GKDKSRLKLVDE 311
Score = 129 bits (326), Expect = 1e-32
Identities = 40/312 (12%), Positives = 71/312 (22%), Gaps = 88/312 (28%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
P + S+ F C +W + + S + G+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN----------- 2201
M+D G Y + G + + K L + H
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 2202 ---------------KYDVIWLHNNKEIKPSNDFAYSSVA--HVHTLKIAEIFPEDSGVY 2244
V ++ N KEI + + + + ++ ED G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 2245 TCEAFNDEGESFSSCTLLVQV--------------------------------------- 2265
T + + + + S+ L+ V
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 2266 -------------SWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ---- 2308
WYKD +S D + + I + D G Y
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDE---KHDFKDGICTLLITEFSKKDAGIYEVILKDD 298
Query: 2309 MGGIIAAFSLNV 2320
G + L
Sbjct: 299 RGKDKSRLKLVD 310
Score = 93.9 bits (233), Expect = 2e-20
Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 46/236 (19%)
Query: 1987 SSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRV-IAIATPTLTWF 2045
+S + + + V + E V+F + + +
Sbjct: 84 ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI 143
Query: 2046 HNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQDT-------------------- 2085
N +E+ + K+ + ++ +++ +D
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGI-----IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198
Query: 2086 ----------------SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWF 2128
R+ P F ++ S +V C+V I T + W+
Sbjct: 199 VGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSWEVTGECNVLLKCKVANIKKETHIVWY 257
Query: 2129 HNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ +E+ K + T +I +D G Y + ++ G + + L +
Sbjct: 258 KDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 78.9 bits (194), Expect = 2e-15
Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 47/165 (28%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+ W + + S S + + ++ +D G+Y+C+ + +G + S
Sbjct: 33 EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE 92
Query: 2264 ----------------------------------------------QVSWYKDGNPVSDD 2277
+V++ + + +
Sbjct: 93 ELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG 152
Query: 2278 PA-TYQFTQIGQTYKMKILSTTLDDVGQYSAQMGGIIAAFSLNVV 2321
P + +M + +D G Y+ Q+ A VV
Sbjct: 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 197
Score = 59.6 bits (144), Expect = 4e-09
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 4/139 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ P K + ++ LN E P E +W+ D + DS R V S G T
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTE-DSPRLEVESKGNKTK 59
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLN 391
+ + D G Y ++ +T G S + E + + + K + EL
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDG--IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 392 LIVPDHLKNLWNMKKSLHP 410
I+ W + L
Sbjct: 118 EILEKGQVRFWMQAEKLSG 136
Score = 59.2 bits (143), Expect = 5e-09
Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 8/131 (6%)
Query: 244 EFRVIAVNKGG-------PGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ 296
+ + G E K ++ + +F +K+ L I++ G++
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 297 FIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 355
+V + + KE+ + + + + D GTY +L++
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 356 DEGSFTVTVLE 366
+ + +
Sbjct: 192 NHSTVVLVGDV 202
Score = 58.1 bits (140), Expect = 1e-08
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 18/144 (12%)
Query: 649 IPDLTKGQEYEFRVIAVNEAG-------------PSEPSDASDIIMCKQRFLAPKIKTPL 695
+ L E + + +A R P L
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229
Query: 696 KDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKR 754
+ + ++ + + W D +E+ D I I +
Sbjct: 230 SWEV-TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI---TEFSK 285
Query: 755 SDSGTYHLELRNTSGRDEGSFTIV 778
D+G Y + L++ G+D+ +V
Sbjct: 286 KDAGIYEVILKDDRGKDKSRLKLV 309
Score = 58.1 bits (140), Expect = 1e-08
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ P K + ++ LN E P E +W+ D + DS R V S G T
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTE-DSPRLEVESKGNKTK 59
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNL 785
+ + D G Y ++ +T G S+ I + LK L
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRL 97
Score = 58.1 bits (140), Expect = 1e-08
Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 18/145 (12%)
Query: 234 VPDLKEGEEYEFRVIAVNKGG-------------PGEPSKASAPVTCKPRFVAPKIKTPL 280
+ L++ +E + + +A R P L
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229
Query: 281 KDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKR 339
+ + ++ + + W D +E+ D I I +
Sbjct: 230 SWEV-TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF---SK 285
Query: 340 SDSGTYHLELRNTSGRDEGSFTVTV 364
D+G Y + L++ G+D+ +
Sbjct: 286 KDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 55.8 bits (134), Expect = 6e-08
Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSE-----------PGKQSGPVIVEEQPNKPVMDLSGV 1433
+ L + +E T+ + + ++ +E K
Sbjct: 169 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 228
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR 1492
V + + + W+ ++ I + +L++ +
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE---KHDFKDGICTLLITEFSK 285
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRV 1517
D G Y + LK+ G D + L +
Sbjct: 286 KDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 55.4 bits (133), Expect = 9e-08
Identities = 12/143 (8%), Positives = 39/143 (27%), Gaps = 7/143 (4%)
Query: 1396 TFRVIAVNEAGNSE-----PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHV-P 1449
+ + G + + + + + P + + + + +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 1450 FMAFPQPAAFWFANDSIIDDSD-TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF 1508
+ N+ I + ++H + ++ Q D G Y QL++
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 1509 DTATLHVRVLDRPHPPENLHADE 1531
+ +T+ + +
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQR 214
Score = 55.4 bits (133), Expect = 1e-07
Identities = 26/193 (13%), Positives = 58/193 (30%), Gaps = 20/193 (10%)
Query: 649 IPDLTKGQEYEFRVIAVNEAG-------PSEPSDASDIIMCKQRFLAPKIKTPLKDIIIK 701
DL + + G E + + +F +K+ L I++
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 702 AGKILNVEIQFIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTY 760
G++ +V + + KE+ + + + + D GTY
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 761 HLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAP 820
+L++ + + +V D K L + E ++ + P E
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQ------------KEAEFQRQEWIRKQGPHFVEYL 229
Query: 821 KVDRITKDSVTLS 833
+ + +V L
Sbjct: 230 SWEVTGECNVLLK 242
Score = 43.1 bits (101), Expect = 7e-04
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
++ + M P+ W + +DS R+ + N + K+
Sbjct: 11 VNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSP-RLEVESKGNKTKMTFKDLGMD 68
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADE 1531
D G Y + + G A+ ++ + L +
Sbjct: 69 DLGIYSCDVTDTDG--IASSYLIDEEELKRLLALSHEH 104
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 146 bits (368), Expect = 9e-37
Identities = 66/461 (14%), Positives = 135/461 (29%), Gaps = 43/461 (9%)
Query: 1240 SSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRV 1299
+W P+ G +E+R R L + L+ G YE +
Sbjct: 10 QVWQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSH--------GDYEITI 61
Query: 1300 IAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV-DRITKDSVTLSWRPPK--HDGGAR 1356
++++ G + PD PE ++ + ++ L W +
Sbjct: 62 NSLHDFGSSTSKFTLNEQNVSL---IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSN 118
Query: 1357 IKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLS--------EGEEYTFRV-IAVNEAGN 1407
+ I RK+ + V + + E + + ++
Sbjct: 119 VIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHF 178
Query: 1408 SEPGKQSGPVIVEEQPNKPVMDLSGV-RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSI 1466
S + S V++ P +D + G D + A N +
Sbjct: 179 SGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPL 238
Query: 1467 IDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
I L + ++ ++N S + + + P P+
Sbjct: 239 I---------HLDGENVAIKIRNISVSA--SSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ 287
Query: 1527 LHADEFAGDSLTLYWTPPRDNG--GSEITNYVVEKKDYNSTVWTKVSSYVT--TPFVRVR 1582
L+ + + W P R G T+Y + + V K + T + + +
Sbjct: 288 LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQ 347
Query: 1583 NLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWS 1642
L Y F + A N G S+ + ++ P P + K D ++ L W
Sbjct: 348 MLPNQEIYNFTLNAHNPLGRSQSTILVNIT----EKVYPHTPTSFKVKDINSTAVKLSWH 403
Query: 1643 KPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
P + I K+ S + ++ + ++S
Sbjct: 404 LPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVA 444
Score = 114 bits (286), Expect = 3e-26
Identities = 65/435 (14%), Positives = 124/435 (28%), Gaps = 43/435 (9%)
Query: 1006 PPDAPSQPEVTGYSPSSVSLAWNPPANHG---------GRPITDKPSPPQGPLDVSDITP 1056
+ ++ S + N + G + ++ P P+ +D +
Sbjct: 40 YQLEKTSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFST 99
Query: 1057 ESCSLSW--KPPLDDGGSPITNYV-VEKYESATGFWSKLSSFVRSPAYDVFGLETNR--- 1110
+ L W + + S + + V + ES + +
Sbjct: 100 STLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMP 159
Query: 1111 ----QYRFRVRAE-NQYGVSEPLELDNSITAKFPFTVPDPPG----QPQIVDWDTNNATL 1161
+ +R + S E + K +PD Q +++ ++ T
Sbjct: 160 LECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSD-ITF 218
Query: 1162 MWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQGRIQS 1221
+ S + G+ + + + + + + I G +
Sbjct: 219 CC-VSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIF 277
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHG--GRPITGYYVEKRERGGEWLRANNYPT 1279
PPD P Q + + +WNP G T Y + + G
Sbjct: 278 AGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAP 337
Query: 1280 TN--LNFTVHDLREGGKYEFRVIAINEAGPGKPS---KPTDIVQCKEQKRKPDPPEAPKV 1334
TN L Y F + A N G + + T+ V P P + KV
Sbjct: 338 TNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKV-------YPHTPTSFKV 390
Query: 1335 DRITKDSVTLSWRPPKHDGGARIK-GYIVQKRKKGGDWVDANSVPVPNPVH--TVGNLSE 1391
I +V LSW P + ++K + + V N + + L+
Sbjct: 391 KDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNP 450
Query: 1392 GEEYTFRVIAVNEAG 1406
YTFR+ E
Sbjct: 451 YTLYTFRIRCSTETF 465
Score = 99.1 bits (246), Expect = 3e-21
Identities = 75/503 (14%), Positives = 144/503 (28%), Gaps = 56/503 (11%)
Query: 190 VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 249
W P G + IE++ ++C T+ +P L G+ YE + +
Sbjct: 12 WQCSWKAPSGTGRGTDYEVCIEQR------SRSC-YQLEKTSIKIPALSHGD-YEITINS 63
Query: 250 VNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTI 309
++ G + + + P TP IL + F + W
Sbjct: 64 LHDFGSSTSK---FTLNEQNVSLIPD--TPE---------ILQLSADF-STSTLYLKWND 108
Query: 310 DGKELKTDSVRTTVTSIGYH-TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETI 368
G S ++ + ++ + + T+ L S+ + +
Sbjct: 109 RGSVFPHRS------NVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWA-SDMPLE 161
Query: 369 SKTNTTTISSKNMMYLFE--RELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVK 426
+ I F E + + + + + + P I
Sbjct: 162 CAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCV 221
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRI---RTENMYGASEPLDPL 483
S+ + A G N + ++ ++ + +N++G
Sbjct: 222 SQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGT----VIF 277
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDG--GAPILHYIIEKMDISRGTW---SDA 538
P P+ L + SW G Y + + + ++A
Sbjct: 278 AGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA 336
Query: 539 GMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKD 598
S L +++ Y F + A N +G S + T E P P VKD
Sbjct: 337 PTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT----EKVYPHTPTSFKVKD 392
Query: 599 WGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW---MNALEVPANKTDVKIPDLTKG 655
V L+W P N I+ K+ + + V + V + L
Sbjct: 393 INSTAVKLSWHLPGNFAKINFL-CEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPY 451
Query: 656 QEYEFRVIAVNEA--GPSEPSDA 676
Y FR+ E S+ S+
Sbjct: 452 TLYTFRIRCSTETFWKWSKWSNK 474
Score = 98.4 bits (244), Expect = 5e-21
Identities = 62/376 (16%), Positives = 112/376 (29%), Gaps = 47/376 (12%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAEN 1120
SWK P G +E+ + + + + L Y + + +
Sbjct: 14 CSWKAPSGTGRGTDYEVCIEQRSRSC-------YQLEKTSIKIPALSHG-DYEITINSLH 65
Query: 1121 QYGVSEPLELDNSITAKFPFTVPDPPGQPQI-VDWDTNNATLMWDRPRT--DGGSKIQGY 1177
+G S ++ + +PD P Q+ D+ T+ L W+ + S + +
Sbjct: 66 DFGSSTSKF---TLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV-IW 121
Query: 1178 KVEFRSTRTATDCGLGYQQCHADVGQTPHGWW------LQDSRIQGRIQSPFDPPDAPSQ 1231
+++ + L Q + T H W L+ + I+ D
Sbjct: 122 EIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGL 181
Query: 1232 PEVTGYSPSS------VSLAWNPPANH---GGRPITGYYVEKRERGGEWLRANNYPTTNL 1282
E + +SP S P + G IT V + + + N P +L
Sbjct: 182 EEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHL 241
Query: 1283 N-----FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI 1337
+ + ++ V+ E T I PD P+ +
Sbjct: 242 DGENVAIKIRNISVSASSGTNVVFTTEDNIFG----TVIFAG----YPPDTPQQLNCETH 293
Query: 1338 TKDSVTLSWRPPKHDG--GARIKGYIVQKRKKGGDWVDANSVPVPN--PVHTVGNLSEGE 1393
+ SW P + G R Y + + G + N L E
Sbjct: 294 DLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQE 353
Query: 1394 EYTFRVIAVNEAGNSE 1409
Y F + A N G S+
Sbjct: 354 IYNFTLNAHNPLGRSQ 369
Score = 89.1 bits (220), Expect = 4e-18
Identities = 68/518 (13%), Positives = 132/518 (25%), Gaps = 76/518 (14%)
Query: 81 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEG 140
LK W+AP G +E+ R + T + L G
Sbjct: 2 LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLEKTSIKIPALSHG 55
Query: 141 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKK 199
DY + +++ G S + + ++ PD P ++ D+ + L+W
Sbjct: 56 -DYEITINSLHDFGSSTS---KFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGS 111
Query: 200 DGGSPIS-QYIIEKKPK----------YGPWEKACIVPANITATSVPDLKEGEEYEFRVI 248
+ + I+ K + + + S L E + +
Sbjct: 112 VFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPL-ECAIHFVEIR 170
Query: 249 AVNKG----GPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 304
G E S S + P +D +I G + +
Sbjct: 171 CYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFP-QDKVILVGSDITFCCVSQEKVLSA 229
Query: 305 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + + D + S S + + T+ + +
Sbjct: 230 LIGHTNCPLIHLDGENVAIKIRNI-----------SVSASSGTNVVFTTEDNIFGTVIFA 278
Query: 365 LETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEA 424
+ ++ + WN + V
Sbjct: 279 GYPPDTPQQLNCETHDLKEIICS--------------WNPGRVTALV-----------GP 313
Query: 425 VKSRYIIEMAEYGLDNWKTVPGFCPKEFF--TVKGLTEGKKYVFRIRTENMYGASEPLDP 482
+ Y + + G E + + L + Y F + N G S+
Sbjct: 314 RATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTIL 373
Query: 483 LFPD---KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDA- 538
+ P P +V ++ + KLSW +P + L I K S +
Sbjct: 374 VNITEKVYPHTPTS-FKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT 432
Query: 539 ---GMTVSLFYDVPRLIHRKEYLFRV--KAVNSIGESD 571
S + +L Y FR+ S
Sbjct: 433 IQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSK 470
Score = 83.0 bits (204), Expect = 3e-16
Identities = 80/653 (12%), Positives = 157/653 (24%), Gaps = 203/653 (31%)
Query: 495 LEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHR 554
L+ + + SW+ P G IE+ +P L H
Sbjct: 2 LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLEKTSIKIPALSHG 55
Query: 555 KEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTV-KDWGEDFVDLAW--KPP 611
+Y + +++ G S + T +N PD PE + D+ + L W +
Sbjct: 56 -DYEITINSLHDFGSS---TSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGS 111
Query: 612 LNDGGSPIT-DYIIQKKEKGNPYWMNALEVPANKTDV--------KIPDLTKGQEYEFRV 662
+ S + + + +KE + + N D +P E R
Sbjct: 112 VFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRC 171
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPL--KDIIIKAGKILNVEIQFIGEPPPEV 720
++ S + SD KQ P +T + +D +I G + + +
Sbjct: 172 -YIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSAL 230
Query: 721 TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPD 780
+ + D +
Sbjct: 231 IGHTNCPLIHLDGENVAIK----------------------------------------- 249
Query: 781 HLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHD 840
++N+ + S V+ +++ PD P+ + + SW P +
Sbjct: 250 -IRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRV- 307
Query: 841 GGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVEN 900
T L + + E GK
Sbjct: 308 --------------------------------TALVGPRATSYTLVESFSGK-------- 327
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
+ + + L Y F + A N G S+
Sbjct: 328 ------------YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTIL-- 373
Query: 961 PVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSP 1020
+++ + V P P+ +V +
Sbjct: 374 --------------------------VNITEKV------------YPHTPTSFKVKDINS 395
Query: 1021 SSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 1080
++V L+W+ P N +E
Sbjct: 396 TAVKLSWHLPGNFAKINFL-------------------------------------CEIE 418
Query: 1081 KYESATGFWSKLSSFVRSPA----YDVFGLETNRQYRFRVRA--ENQYGVSEP 1127
+S + + + + L Y FR+R E + S+
Sbjct: 419 IKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKW 471
Score = 77.2 bits (189), Expect = 2e-14
Identities = 35/210 (16%), Positives = 53/210 (25%), Gaps = 18/210 (8%)
Query: 70 WLHIPSPPEGP--LKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRWV--- 122
+ PP+ P L W R G Y + + +
Sbjct: 275 VIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRA 334
Query: 123 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV 182
+ L YNF + A N +G S + + P P V
Sbjct: 335 EAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNI----TEKVYPHTPTSFKV 390
Query: 183 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI----VPANITATSVPDLK 238
D V L W P IE K E+ + V + ++ L
Sbjct: 391 KDINSTAVKLSWHLPGNFAKINF-LCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLN 449
Query: 239 EGEEYEFRVIAV--NKGGPGEPSKASAPVT 266
Y FR+ + S +T
Sbjct: 450 PYTLYTFRIRCSTETFWKWSKWSNKKQHLT 479
Score = 74.9 bits (183), Expect = 1e-13
Identities = 58/387 (14%), Positives = 110/387 (28%), Gaps = 53/387 (13%)
Query: 813 KPDPPEAPKV-DRITKDSVTLSWRPPK--HDGGARIKGYIVQKRKKGGDWVDANSV-PVP 868
PD PE ++ + ++ L W + + I RK+ + V +
Sbjct: 84 IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTL 143
Query: 869 NPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVN-HVSPYDH 927
N TL + S E H + ++N + + + W P P
Sbjct: 144 NGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSD---WSPVKQISWIPDSQ 200
Query: 928 HATVPR---LLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEI 984
P+ +L G+ F ++ + T P++ + + K N V
Sbjct: 201 TKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAI-KIRNISVSASS 259
Query: 985 CQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSP 1044
+ D PPD P Q + + +WNP
Sbjct: 260 GTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTAL--------- 310
Query: 1045 PQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVF 1104
G T+Y + + S K + + +Y +
Sbjct: 311 -------------------------VGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLL 345
Query: 1105 --GLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLM 1162
L Y F + A N G S+ + P P ++ D ++ L
Sbjct: 346 FQMLPNQEIYNFTLNAHNPLGRSQS----TILVNITEKVYPHTPTSFKVKDINSTAVKLS 401
Query: 1163 WDRPRTDGGSKIQGYKVEFRSTRTATD 1189
W P + ++E + + + +
Sbjct: 402 WHLP-GNFAKINFLCEIEIKKSNSVQE 427
Score = 73.3 bits (179), Expect = 4e-13
Identities = 49/338 (14%), Positives = 85/338 (25%), Gaps = 62/338 (18%)
Query: 1011 SQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDG 1070
+ +S W+P P + PQ + I
Sbjct: 171 CYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKV----ILV-------------- 212
Query: 1071 GSPITNY-VVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
GS IT V ++ + + +V N + G +
Sbjct: 213 GSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRN------ISVSASSGTNVVFT 266
Query: 1130 LDNSITAKFPFTVPDPPGQPQIV---DWDTNNATLMWDRPRTDG--GSKIQGYKVEFRST 1184
PP PQ + D W+ R G + Y + +
Sbjct: 267 -TEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFS 325
Query: 1185 RTATDCGLGYQQCHADVGQTPHGWWLQDSRIQ-------------GRIQSPFD------- 1224
+ + Q Q GR QS
Sbjct: 326 GKYVRL-----KRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKV 380
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRAN----NYPTT 1280
P P+ +V + ++V L+W+ P N +E ++ + N +
Sbjct: 381 YPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFL-CEIEIKKSNSVQEQRNVTIQGVENS 439
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQ 1318
+ + L Y FR+ E K SK ++ Q
Sbjct: 440 SYLVALDKLNPYTLYTFRIRCSTE-TFWKWSKWSNKKQ 476
Score = 72.2 bits (176), Expect = 9e-13
Identities = 67/492 (13%), Positives = 136/492 (27%), Gaps = 68/492 (13%)
Query: 1156 TNNATLM---WDRPRTDGGSKIQGYKVEFRSTRT----ATDCGLGYQQC--HADVGQTPH 1206
TNN + W P G +E RS T + + + H
Sbjct: 6 TNNLQVWQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSHGDYEITINSLH 65
Query: 1207 GWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSP-SSVSLAWN--PPANHGGRPITGYYVE 1263
+ S+ Q+ PD P +++ S++ L WN +
Sbjct: 66 DFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKV 125
Query: 1264 KRERGGEWLRANNYPTTNL--------NFTVHDLREGGKYEFRV-IAINEAGPGKPSKPT 1314
R+ E ++ + TT ++ E + + I+ + +
Sbjct: 126 LRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWS 185
Query: 1315 DIVQCKEQKRKPDPPEAPKVDRITK---DSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 1371
D K+ PD +T + + ++
Sbjct: 186 DWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEK-----VLSALIGHTNCPLIH 240
Query: 1372 VDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLS 1431
+D +V + + N+S V+ +E + P+ P
Sbjct: 241 LDGENVAI-----KIRNISVSASSGTNVVF-----TTEDNIFGTVIFAGYPPDTP----- 285
Query: 1432 GVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII----------DDSDTRVHKQLTMN 1481
+ + + + I ++ + + T
Sbjct: 286 --QQLNCETHDLKEIIC---SWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNE 340
Query: 1482 SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDR--PHPPENLHADEFAGDSLTL 1539
S L+ + + + L NP G +T+ V + ++ PH P + + ++ L
Sbjct: 341 SYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKL 400
Query: 1540 YWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP----FVRVRNLAIGSTYEFRV- 1594
W P + +E K NS + + V + L + Y FR+
Sbjct: 401 SWHLPGNFAKINFL-CEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIR 459
Query: 1595 -MAENQYGLSKP 1605
E + SK
Sbjct: 460 CSTETFWKWSKW 471
Score = 61.4 bits (148), Expect = 2e-09
Identities = 59/446 (13%), Positives = 107/446 (23%), Gaps = 63/446 (14%)
Query: 448 CPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP----DKPSPPEGPLEVSNVTKE 503
K + L+ G Y I + + +G+S L P PE ++ +
Sbjct: 42 LEKTSIKIPALSHGD-YEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTS 100
Query: 504 SCKLSWRVP---VDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFR 560
+ L W I + + + T D
Sbjct: 101 TLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHW-------- 152
Query: 561 VKAVNSIGESDTLETTKTTV-ARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPI 619
S LE V R D DW ++W P P
Sbjct: 153 -----SWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSP-VKQISWIPDSQTKVFP- 205
Query: 620 TDYIIQK--------KEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPS 671
D +I + + G+ ++ ++ S
Sbjct: 206 QDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHL------DGENVAIKIRNIS---VS 256
Query: 672 EPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT 731
S + + + I + + +W
Sbjct: 257 ASSGTNVVFTTEDNIFGTVIFAGY-----PPDTPQQLNCETHDLKEIICSWNPGRVTALV 311
Query: 732 DSVRT--TVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTK 789
T T+ V + + +Y L + ++ +FT+ N
Sbjct: 312 GPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLN---AHNPLGRS 368
Query: 790 KSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIK-GY 848
+S V E V P P + KV I +V LSW P +
Sbjct: 369 QSTILVNI--------TEKV---YPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEI 417
Query: 849 IVQKRKKGGDWVDANSVPVPNPVHTL 874
++K + + V N + +
Sbjct: 418 EIKKSNSVQEQRNVTIQGVENSSYLV 443
Score = 34.4 bits (78), Expect = 0.45
Identities = 50/441 (11%), Positives = 106/441 (24%), Gaps = 77/441 (17%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPR-DDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
IP PE ++ + S+ L+W + + ++ + E+ V + T
Sbjct: 84 IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTL 143
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQS-PITAKDPFGRPDRPGQPTVTDW----- 185
+ L +PL C + + G +DW
Sbjct: 144 NGKDTLHHW-----------SWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQ 192
Query: 186 --GKDHVDLEWTPPKK--DGGSPIS-QYIIEKKPK----YGPWEKACIVPANITATSVPD 236
+ P K GS I+ + ++K + A + +
Sbjct: 193 ISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRN 252
Query: 237 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ 296
+ V+ + + P+ + +
Sbjct: 253 ISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQ---------------------QLNCE 291
Query: 297 FIGEPPPEVTWTIDGKELKTDSVRT--TVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG 354
+W T T+ V + + +Y L +
Sbjct: 292 THDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPN 351
Query: 355 RDEGSFTVTVLETISKTNTTTISSKNMMYLFERELL----NLIV----PDHLKNLWNMKK 406
++ +FT+ S ++ + E+ + V +K W++
Sbjct: 352 QEIYNFTLNA-----HNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPG 406
Query: 407 SL-HPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYV 465
+ C + N + L Y
Sbjct: 407 NFAKINFLCE-----------IEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYT 455
Query: 466 FRIR--TENMYGASEPLDPLF 484
FRIR TE + S+ +
Sbjct: 456 FRIRCSTETFWKWSKWSNKKQ 476
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 139 bits (352), Expect = 4e-36
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPK 1746
D Y++ E IG+GA VV A K I + + + KEI M+Q HHP
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGG-------ELFERITAPDYKMSEAEVINYMRQVCEAV 1799
+++ + +F DE+ L+ + LSGG + + + E+ + +R+V E +
Sbjct: 75 IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 134
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKL----DPNEVVKIST--GTAEF 1853
+++H+ IH DVK NI+ +V++ DFG++ L D T GT +
Sbjct: 135 EYLHKNGQIHRDVKAGNILLGEDG--SVQIADFGVSAFLATGGDITRNKVRKTFVGTPCW 192
Query: 1854 AAPEIVER-EPVGFYTDMWAVGVLAY 1878
APE++E+ F D+W+ G+ A
Sbjct: 193 MAPEVMEQVRGYDFKADIWSFGITAI 218
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 131 bits (332), Expect = 6e-36
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNL 1282
P AP V + ++ +L W PP G I GY VE G EW+ AN P
Sbjct: 7 GPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERC 66
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKP 1326
FTV DL G + FRV+ +N AG +P+ V +E
Sbjct: 67 GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 130 bits (328), Expect = 2e-35
Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 1384
P+ V+ +T + TL WRPP G I GY+V+ +G +WV AN PV
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
TV +L G FRV+ VN AG SEP PV + E
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 122 bits (307), Expect = 2e-32
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
AP+ TV+D + L W+PP G I Y+++ +G+ W+ A + P +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAP 689
+ DL G FRV+ VN AG SEP+ + ++ +
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 117 bits (294), Expect = 9e-31
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 225
+ G P TV D L+W PP + G I Y++E + W A
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
P +V DL G FRV+ VN G EP+ PVT + +
Sbjct: 62 PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 114 bits (287), Expect = 8e-30
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRSPA 1100
S PQ V D+T + +L W+PP G I Y+VE + W + V
Sbjct: 9 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ V L T + FRV N G SEP L +T + G
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111
Score = 110 bits (277), Expect = 2e-28
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFV 1579
P++L ++ + TL W PP G I Y+VE S W + V
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
V++L G+ FRV+ N G S+PA + P+ + G
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 101 bits (254), Expect = 2e-25
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 74 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSG 129
P P ++T ++ L+WR P G I Y+VE + WVP V
Sbjct: 6 SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVER 65
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 178
++L G FRV VN G S P P+T ++ G
Sbjct: 66 CGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111
Score = 93.6 bits (233), Expect = 2e-22
Identities = 36/153 (23%), Positives = 49/153 (32%), Gaps = 58/153 (37%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
P+ V+ +T + TL WRPP G I GY+V+ +G +WV AN PV
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
T+ +DL G
Sbjct: 69 TV--------------------------------KDLPTG-------------------- 76
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
FRV N+ G SEP T +PV +
Sbjct: 77 -----ARILFRVVGVNIAGRSEPATLLQPVTIR 104
Score = 90.5 bits (225), Expect = 2e-21
Identities = 26/106 (24%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDA--GMTV 542
S P+ V +VT + L WR P G I Y++E W A
Sbjct: 6 SGPTSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVE 64
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEP 588
+ V L LFRV VN G S+ + R
Sbjct: 65 RCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 72.4 bits (178), Expect = 4e-15
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
AP D T+ + +L W P G I Y+VE L ++W+ A+ +
Sbjct: 7 GPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERC 66
Query: 1679 S 1679
Sbjct: 67 G 67
Score = 63.1 bits (154), Expect = 7e-12
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 429 YIIEMAEYGLDNWKTV-PGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP---LDPLF 484
Y++E G + W + FTVK L G + +FR+ N+ G SEP L P+
Sbjct: 43 YLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVT 102
Query: 485 PDKPSPPEG 493
+ P G
Sbjct: 103 IRESGPSSG 111
Score = 62.4 bits (152), Expect = 1e-11
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1874 GVLAYVLDVAED--TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
G+ Y+++ + W AN V+ + V L G FRV N AG S+P++
Sbjct: 39 GIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLL 98
Score = 56.2 bits (136), Expect = 2e-09
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
P + D TL W P G I GY VE+ +
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEE 54
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 138 bits (350), Expect = 9e-36
Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 25/200 (12%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK----EIDIMNQLH 1743
+ Y+ + +IG G++GVV +CR R TG I A K S + +I+K EI ++ QL
Sbjct: 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE--DDPVIKKIALREIRMLKQLK 60
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
HP L+NL + F + L+FE+ + + + E V + Q +AV H
Sbjct: 61 HPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH 119
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA----TKLDP--NEVVKISTGTAEFAAPE 1857
+ N IH DVKPENI+ + +K+ DFG A D +EV T + +PE
Sbjct: 120 KHNCIHRDVKPENILITKHS--VIKLCDFGFARLLTGPSDYYDDEVA-----TRWYRSPE 172
Query: 1858 IVEREPVGFYT---DMWAVG 1874
++ + Y D+WA+G
Sbjct: 173 LLVGDT--QYGPPVDVWAIG 190
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 139 bits (352), Expect = 1e-35
Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 18/227 (7%)
Query: 1663 SDDKWIKASMAHIPDTSLKYTSSVY------DHYDILEEIGTGAFGVVHRCRERKTGNIF 1716
S+ + +K +A + LK + D +D ++ +GTG+FG V + +++GN +
Sbjct: 10 SEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHY 69
Query: 1717 AAKFIPVSHNLEK---ELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELF 1773
A K + ++ E E I+ ++ P L+ L +F+D+ + ++ E+++GGE+F
Sbjct: 70 AMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMF 129
Query: 1774 ERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFG 1833
+ + SE Y Q+ +++H ++I+ D+KPEN++ + +++ DFG
Sbjct: 130 SHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG--YIQVTDFG 186
Query: 1834 LATKLDPNEVVKIST--GTAEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
A ++ + T GT E APEI+ + D WA+GVL Y
Sbjct: 187 FAKRVKG----RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIY 229
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 143 bits (363), Expect = 1e-35
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---------EIDI 1738
D + +G G FG V C+ + TG ++A K L K+ ++K E I
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKK------LNKKRLKKRKGYQGAMVEKKI 238
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKM---SEAEVINYMRQV 1795
+ ++H +++L AFE ++ L+ ++GG++ I D E I Y Q+
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 1796 CEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEF 1853
++H+H++NII+ D+KPEN++ NV++ D GLA K GT F
Sbjct: 299 VSGLEHLHQRNIIYRDLKPENVLLDDDG--NVRISDLGLA-VELKAGQTKTKGYAGTPGF 355
Query: 1854 AAPEIVEREPVGFYTDMWAVGVLAY 1878
APE++ E F D +A+GV Y
Sbjct: 356 MAPELLLGEEYDFSVDYFALGVTLY 380
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 134 bits (339), Expect = 1e-35
Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 23/192 (11%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
AP + + G++ + +C+++ P + W+ +EL QS K+ G +T
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY--------- 2203
+ + ED G Y A N G E L +Q P H + Y
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT---PQFHPGYPLKEKYYGAVGSTLRL 123
Query: 2204 ----------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEI-FPEDSGVYTCEAFNDE 2252
+ W H K ++ S + + H L + + +G Y + N
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 2253 GESFSSCTLLVQ 2264
G + + +Q
Sbjct: 184 GTVDAILDVEIQ 195
Score = 117 bits (296), Expect = 6e-30
Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
AP + + G++ + +C+++ P + W+ +EL QS K+ G +T
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT-- 64
Query: 2070 SSLRKLQIDRFSIQD----------------TSFD-RRQAAPRFV---IKPQSAFCYEGQ 2109
L + +D TS QA P+F + + G
Sbjct: 65 -----LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS 119
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI-NRTKMEDRGEYIIRA 2168
+++ I P +TWFH + L+ S V+ N + G+Y ++
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 2169 ENHYGYREEVVFLNVQRK 2186
N +G + ++ + +Q K
Sbjct: 180 SNVFGTVDAILDVEIQDK 197
Score = 90.1 bits (224), Expect = 3e-20
Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 42/159 (26%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
D+ W KE+ S + SS HTL + ED GVYTC A N+ GE +S LL+
Sbjct: 38 DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
Query: 2264 Q------------------------------------VSWYKDGNPVSDDPATYQFTQIG 2287
Q ++W+ + +
Sbjct: 98 QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTE 156
Query: 2288 QTYKMKILSTTL-DDVGQYSAQM----GGIIAAFSLNVV 2321
+ + + G+Y Q+ G + A + +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 80.5 bits (199), Expect = 6e-17
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
YT IA NE G E S ++++ P + G +HV ++
Sbjct: 77 VYT--CIATNEVGEVE---TSSKLLLQATP-QFHPGYPLKEKYYGAVGSTLRLHVMYIGR 130
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR-SDGGQYRLQLKNPAGFDTAT 1512
P PA WF ++ +S+ + + T + LV+KN QR + G+Y++QL N G A
Sbjct: 131 PVPAMTWFHGQKLLQNSE-NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189
Query: 1513 LHVRVLDR 1520
L V + D+
Sbjct: 190 LDVEIQDK 197
Score = 71.3 bits (175), Expect = 8e-14
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ IA N+ G E + + + P+F + G L + + +IG P P
Sbjct: 77 VYTCIATNEVGEVE-TSSKLLLQATPQFHPGY--PLKEKYYGAVGSTLRLHVMYIGRPVP 133
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTV 362
+TW K L +S T+ + ++T + N +++ +G Y ++L N G + V
Sbjct: 134 AMTWFHGQKLL-QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDV 192
Query: 363 TVLE 366
+ +
Sbjct: 193 EIQD 196
Score = 66.3 bits (162), Expect = 5e-12
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
AP I+ +KD+ K G+ + Q +G P P++ W GKEL + ++S G +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTL 65
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ ++ D G Y N G E S + +
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 62.0 bits (151), Expect = 1e-10
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+ + E + IA NE G E + + ++ +F + G L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVE-TSSKLLLQATPQFHPGY--PLKEKYYGAVGSTLR 122
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVN-TKRSDSGTYHLELRN 766
+ + +IG P P +TW K L +S T+ + ++T + N +++ +G Y ++L N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLL-QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181
Query: 767 TSGRDEGSFTIV 778
G + +
Sbjct: 182 VFGTVDAILDVE 193
Score = 60.1 bits (146), Expect = 5e-10
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP I+ +KD+ K G+ + Q +G P P++ W GKEL + ++S G +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTL 65
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ ++ D G Y N G E S ++
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Score = 52.8 bits (127), Expect = 2e-07
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+D+T K GE + + P P W+ + S + + +L V ++
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTLTVMTEEQE 73
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPH------PPENLHADEFAGDSLTL 1539
D G Y N G + + + P E + G +L L
Sbjct: 74 DEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV--GSTLRL 123
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 134 bits (338), Expect = 1e-35
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 22/200 (11%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRE-RGGEWLRANNYPTTNLN 1283
P T P+S + WN P I+ Y + R + P +
Sbjct: 2 GP-VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNS 57
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSK------------PTDIVQCKEQKRKPDPPEA 1331
+T+ L+ G YE ++I+I + G + ++ ++ V + P +
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATS 117
Query: 1332 PKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHTVGNLS 1390
V IT S +SW + G+ V+ + + GD +P + +L
Sbjct: 118 ESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLL 173
Query: 1391 EGEEYTFRVIAVNEAGNSEP 1410
G +Y V ++E G
Sbjct: 174 PGRKYIVNVYQISEDGEQSL 193
Score = 133 bits (335), Expect = 3e-35
Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 22/207 (10%)
Query: 75 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 134
P E + + +S ++W AP+ + I Y++ + + G
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 135 --ENLIEGHDYNFRVKAVNKIGESLPL------------VCQSPITAKDPFGRPDRPGQP 180
+ L G Y ++ ++ + G V + +T + P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 181 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITATSVPDLKE 239
+VT+ + W +S + +E + G + +P+ T+ ++PDL
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174
Query: 240 GEEYEFRVIAVNKGGPGEPSKASAPVT 266
G +Y V +++ G +++ T
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 122 bits (308), Expect = 1e-31
Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 23/204 (11%)
Query: 489 SPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---LF 545
P E + + S + W P + I YI+ + T+
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKE-ATIPGHLNS 57
Query: 546 YDVPRLIHRKEYLFRVKAVNSIGESDTLE------------TTKTTVARNEFDEPDAPEK 593
Y + L Y ++ ++ G + T+ T P
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATS 117
Query: 594 PTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLT 653
+V + ++W ++ + ++ + L++P+ T V IPDL
Sbjct: 118 ESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLL 173
Query: 654 KGQEYEFRVIAVNEAGPSEPSDAS 677
G++Y V ++E G ++
Sbjct: 174 PGRKYIVNVYQISEDGEQSLILST 197
Score = 90.9 bits (225), Expect = 2e-20
Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 38/201 (18%)
Query: 1145 PPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR---------------STRTATD 1189
N+ + W+ P+ S I Y + +R + T
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60
Query: 1190 CGLG----YQ---QCHADVGQTPHGWWLQDSRIQGRIQS--------PFDPPDAPSQPEV 1234
GL Y+ G + + + P + V
Sbjct: 61 KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESV 120
Query: 1235 TGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNFTVHDLREGG 1293
T + SS ++W ++G+ VE + G+ + + P+T + + DL G
Sbjct: 121 TEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGR 176
Query: 1294 KYEFRVIAINEAGPGKPSKPT 1314
KY V I+E G T
Sbjct: 177 KYIVNVYQISEDGEQSLILST 197
Score = 87.4 bits (216), Expect = 2e-19
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 24/173 (13%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTPFV 1579
+ +S + W P+ S I+ Y++ + NS K + ++ +
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNS--Y 58
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPA------------LTIDPIKAKHPFDVPGAPGAP 1627
++ L G YE ++++ QYG + +T + + + P +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 1628 KGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSL 1680
+ T S + W + + VE L + + TS+
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSV 167
Score = 84.7 bits (209), Expect = 2e-18
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 20/157 (12%)
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE-SATGFWSKLSSFVRSPAY 1101
P + + + P S + W P S I+ Y++ ++ G W + + +Y
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNS------------ITAKFPFTVPDPPGQP 1149
+ GL+ Y ++ + QYG E D + +T + P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 1150 QIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ + ++ + W + G++VE+ +
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEE 151
Score = 82.4 bits (203), Expect = 1e-17
Identities = 31/233 (13%), Positives = 58/233 (24%), Gaps = 71/233 (30%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
+ Y++ R G W + + + T+ L G YE ++ + G E
Sbjct: 31 SKYILRWRPKNSVGRW--KEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88
Query: 960 EPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYS 1019
+ V V ++ P + VT +
Sbjct: 89 FTTTST------------------------STPVTSNTVTGETTPFSPLVATSESVTEIT 124
Query: 1020 PSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 1079
SS ++W ++ + V
Sbjct: 125 ASSFVVSWVSA----------------------------------------SDTVSGFRV 144
Query: 1080 EKYESATGFWSK---LSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
E S G + L S S ++ L R+Y V ++ G +
Sbjct: 145 EYELSEEGDEPQYLDLPSTATS--VNIPDLLPGRKYIVNVYQISEDGEQSLIL 195
Score = 78.6 bits (193), Expect = 3e-16
Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 13/201 (6%)
Query: 176 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSV 234
T T + ++W P+ S IS+YI+ +PK K +P ++ + ++
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60
Query: 235 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVE 294
LK G YE ++I++ + G E ++ T V T + +
Sbjct: 61 KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG-ETTPFSPLVATSES 119
Query: 295 IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS-------DSGT-YH 346
+ I V+W + V ++ G + + + G Y
Sbjct: 120 VTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 179
Query: 347 LELRNTSGRDEGSFTVTVLET 367
+ + S E S ++ +T
Sbjct: 180 VNVYQISEDGEQSLILSTSQT 200
Score = 76.6 bits (188), Expect = 1e-15
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 13/131 (9%)
Query: 1328 PPEAP-KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVHT 1385
P E +S + W P+ + I YI++ R K ++P +T
Sbjct: 3 PVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYT 59
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEP-------GKQSGPVIVEEQPNKPVMD-LSGVRDIT 1437
+ L G Y ++I++ + G+ E S PV + +
Sbjct: 60 IKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSES 119
Query: 1438 VKAGEDFSIHV 1448
V S V
Sbjct: 120 VTEITASSFVV 130
Score = 76.2 bits (187), Expect = 2e-15
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 31/175 (17%)
Query: 429 YIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF- 484
YI+ T+PG +T+KGL G Y ++ + YG E F
Sbjct: 33 YILRWRPKNSVGRWKEATIPGHLNS--YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 90
Query: 485 -----------------PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEK 527
V+ +T S +SW D + + +E
Sbjct: 91 TTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD----TVSGFRVEY 146
Query: 528 MDISRGTWSDAGMTVS---LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
G + + ++P L+ ++Y+ V ++ GE + +T T
Sbjct: 147 ELSEEGDEPQY-LDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 200
Score = 72.8 bits (178), Expect = 3e-14
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 4/161 (2%)
Query: 595 TVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTK 654
T + + W P S I+ YI++ + K + +P + I L
Sbjct: 9 TETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKP 65
Query: 655 GQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIG 714
G YE ++I++ + G E + + T + + + I
Sbjct: 66 GVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG-ETTPFSPLVATSESVTEIT 124
Query: 715 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS 755
V+W + V ++ G + + +
Sbjct: 125 ASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTAT 165
Score = 60.4 bits (146), Expect = 5e-10
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVT 1575
P + E S + W D ++ + VE + + + S T
Sbjct: 110 FSPLVATSESVTEITASSFVVSWVSASDT----VSGFRVEYELSEEGDEPQYLDLPSTAT 165
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
+ V + +L G Y V ++ G L+
Sbjct: 166 S--VNIPDLLPGRKYIVNVYQISEDGEQSLILST 197
Score = 55.8 bits (134), Expect = 2e-08
Identities = 25/199 (12%), Positives = 47/199 (23%), Gaps = 57/199 (28%)
Query: 816 PPEAP-KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVHT 873
P E +S + W P+ + I YI++ R K ++P +T
Sbjct: 3 PVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYT 59
Query: 874 L-----------------------LSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLT 910
+ ++ + + + + +
Sbjct: 60 IKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSES 119
Query: 911 HGGG--------WVPAVNHVSPY---------------------DHHATVPRLLEGTTYE 941
WV A + VS + +P LL G Y
Sbjct: 120 VTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 179
Query: 942 FRVRAENLQGLSEPITTKE 960
V + G I +
Sbjct: 180 VNVYQISEDGEQSLILSTS 198
Score = 40.8 bits (95), Expect = 0.002
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
S + +E + +P + L G+KY+ + + G +
Sbjct: 140 SGFRVEYELSEEGDEPQYLDLPS--TATSVNIPDLLPGRKYIVNVYQISEDGEQSLI 194
Score = 40.4 bits (94), Expect = 0.002
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 872
P + V IT S +SW + G+ V+ + + GD +P
Sbjct: 112 PLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSV 167
Query: 873 TL 874
+
Sbjct: 168 NI 169
Score = 38.1 bits (88), Expect = 0.016
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 1882 VAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
++E+ + D + + LL G Y V + G ++
Sbjct: 148 LSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197
Score = 35.8 bits (82), Expect = 0.087
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 1874 GVLAYVL---DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ Y+L W+ +Y + L G YE ++ + G + +
Sbjct: 29 HISKYILRWRPKNSVGRWKE-ATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRF 87
Query: 1931 S 1931
Sbjct: 88 D 88
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 130 bits (330), Expect = 1e-35
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 1384
PP VD +T +VT+ WRPP H G A + GY+++ +G DW+ AN +
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEE 1421
T+ L + RV AVN AG SEP S P++V+E
Sbjct: 68 TITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 130 bits (328), Expect = 2e-35
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPT 1279
S P+ V + ++V++ W PP + G + GY +E G +W+ AN
Sbjct: 3 SGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI 62
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
FT+ L K RV A+N AG +P + + KE P
Sbjct: 63 DKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE----SGPS 108
Score = 120 bits (303), Expect = 5e-32
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P TV + V + W+PP + G + + Y+++ +G W+ A + +KT
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCK 683
I L + RV AVN AG SEP S I+ K
Sbjct: 68 TITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 116 bits (293), Expect = 1e-30
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIV 225
P TV V + W PP G + + Y++E + W A
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+ T ++ L + RV AVN G EP S P+ K
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 112 bits (282), Expect = 4e-29
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRSPA 1100
SPP L V +T + ++ W+PP G + + YV+E T W + +
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + GL T+ + RV+A N G SEP I K G
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES---GPSSG 110
Score = 107 bits (270), Expect = 1e-27
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFV 1579
PP L D ++T+ W PP G + + YV+E + W + +
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
+ L + RV A N G S+P PI K G
Sbjct: 68 TITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 101 bits (254), Expect = 2e-25
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTY 131
SPP L ++T ++ + WR P G + YV+E T W+ + T
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
L RVKAVN G S P PI K+
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105
Score = 95.5 bits (238), Expect = 3e-23
Identities = 33/153 (21%), Positives = 48/153 (31%), Gaps = 58/153 (37%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
PP VD +T +VT+ WRPP H G A + GY+++ +G DW+ AN +
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
T+ L
Sbjct: 68 TI--------------------------------TGLPTD-------------------- 75
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
RV+A N G SEP +P++ K
Sbjct: 76 -----AKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 90.9 bits (226), Expect = 1e-21
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 476 ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW 535
S SPP L V +VT + + WR P G A + Y++E W
Sbjct: 1 GSSGSSG-----TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDW 54
Query: 536 SDA--GMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
A + + + L + RVKAVN+ G S+ ++ + +
Sbjct: 55 IVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 74.3 bits (183), Expect = 8e-16
Identities = 13/68 (19%), Positives = 24/68 (35%)
Query: 1614 AKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMA 1673
P T+ ++++ W P H G + + Y++E + WI A+
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 1674 HIPDTSLK 1681
I T
Sbjct: 61 LIDKTKFT 68
Score = 64.7 bits (158), Expect = 2e-12
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 429 YIIEMAEYGLDNWKTV-PGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL---DPLF 484
Y++E G ++W K FT+ GL K R++ N GASEP P+
Sbjct: 42 YVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPIL 101
Query: 485 PDKPSPPEG 493
+ P G
Sbjct: 102 VKESGPSSG 110
Score = 60.8 bits (148), Expect = 4e-11
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1874 GVLAYVLDVAED--TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
G+ YVL+ + +W VAN L+ + + L RVKA NAAG S+P S
Sbjct: 38 GLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYS 97
Score = 59.3 bits (144), Expect = 2e-10
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 1136 AKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ PP + T+ W P G + + GY +E+ T
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTED 53
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 144 bits (364), Expect = 1e-35
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---------EIDI 1738
+ + +G G FG V C+ R TG ++A K LEK+ I+K E I
Sbjct: 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKK------LEKKRIKKRKGEAMALNEKQI 237
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERIT-APDYKMSEAEVINYMRQVCE 1797
+ +++ +++L A+E D + L+ ++GG+L I EA + Y ++C
Sbjct: 238 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICC 297
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPE 1857
++ +H + I++ D+KPENI+ ++++ D GLA + + +K GT + APE
Sbjct: 298 GLEDLHRERIVYRDLKPENILLDDHG--HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPE 355
Query: 1858 IVEREPVGFYTDMWAVGVLAY 1878
+V+ E F D WA+G L Y
Sbjct: 356 VVKNERYTFSPDWWALGCLLY 376
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 138 bits (349), Expect = 2e-35
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 1749
+G G+FG VHR ++++TG A K + + + +E+ L P+++
Sbjct: 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL-----EVFRVEELVACAGLSSPRIVP 114
Query: 1750 LHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIH 1809
L+ A + + + E L GG L + I + E + Y+ Q E ++++H + I+H
Sbjct: 115 LYGAVREGPWVNIFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLHTRRILH 173
Query: 1810 LDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA------APEIVEREP 1863
DVK +N++ + + + + DFG A L P+ + K APE+V +P
Sbjct: 174 GDVKADNVLL-SSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKP 232
Query: 1864 VGFYTDMWAVG 1874
D+W+
Sbjct: 233 CDAKVDIWSSC 243
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 137 bits (348), Expect = 3e-35
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK----EIDIMNQLH 1743
+ Y+ L +G G++G+V +CR + TG I A K S + ++++K EI ++ QL
Sbjct: 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD--DDKMVKKIAMREIKLLKQLR 82
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
H L+NL + + L+FEF+ + + + + V Y+ Q+ + H
Sbjct: 83 HENLVNLLEVCKKKKRWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCH 141
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTAEFAAPE 1857
NIIH D+KPENI+ VK+ DFG A T P +EV T + APE
Sbjct: 142 SHNIIHRDIKPENILVSQSG--VVKLCDFGFARTLAAPGEVYDDEVA-----TRWYRAPE 194
Query: 1858 IVEREPVG--FYT---DMWAVG 1874
++ VG Y D+WA+G
Sbjct: 195 LL----VGDVKYGKAVDVWAIG 212
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation,
transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae}
SCOP: d.144.1.7
Length = 318
Score = 136 bits (344), Expect = 8e-35
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 30/205 (14%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
+ IL +GTG+FG VH R R G +A K L+KE++ K+++ +
Sbjct: 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKV------LKKEIVVRLKQVEHTNDERLM 59
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKM---SEAEVINYMRQV 1795
++ + HP +I + F+D ++ +I +++ GGELF + K Y +V
Sbjct: 60 LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLL----RKSQRFPNPVAKFYAAEV 115
Query: 1796 CEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEF 1853
C A++++H K+II+ D+KPENI+ ++K+ DFG A K P+ T GT ++
Sbjct: 116 CLALEYLHSKDIIYRDLKPENILLDKNG--HIKITDFGFA-KYVPD---VTYTLCGTPDY 169
Query: 1854 AAPEIVEREPVGFYTDMWAVGVLAY 1878
APE+V +P D W+ G+L Y
Sbjct: 170 IAPEVVSTKPYNKSIDWWSFGILIY 194
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 136 bits (345), Expect = 9e-35
Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 21/202 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
+ +D L+ +G G FG V RE+ TG +A K L KE+I + E+ +
Sbjct: 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKI------LRKEVIIAKDEVAHTVTESRV 58
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEA 1798
+ HP L L AF+ D + + E+ +GGELF ++ + +E Y ++ A
Sbjct: 59 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSA 117
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAP 1856
++++H +++++ D+K EN+M ++K+ DFGL K ++ + T GT E+ AP
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDK--DGHIKITDFGLC-KEGISDGATMKTFCGTPEYLAP 174
Query: 1857 EIVEREPVGFYTDMWAVGVLAY 1878
E++E G D W +GV+ Y
Sbjct: 175 EVLEDNDYGRAVDWWGLGVVMY 196
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 128 bits (323), Expect = 1e-34
Identities = 45/116 (38%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 1218 RIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANN 1276
P D P +P + +V+L W P GG IT Y VEKR+ G WL+AN
Sbjct: 3 HHHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANF 62
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGP-GKPSKPTDIVQCKEQKRKPDPPEA 1331
FTV L E YEFRVIA N AG PS+P+D + C+ D EA
Sbjct: 63 SNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR------DDVEA 112
Score = 127 bits (321), Expect = 2e-34
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 1384
DPP P IT+ +VTL W P++ GG +I YIV+KR G W+ AN +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGN-SEPGKQSGPVIVEEQP 1423
TV L+E Y FRVIA N AG S P + S + +
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 122 bits (307), Expect = 1e-32
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
D P KP + V L W P GG IT YI++K++ N W+ A + +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 648 KIPDLTKGQEYEFRVIAVNEAGP-SEPSDASDIIMCK 683
+ LT+ YEFRVIA N AG S PS+ SD I C+
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 117 bits (295), Expect = 6e-31
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 225
D PG+P + + V L+W P+ GG I+ YI+EK+ W KA
Sbjct: 4 HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNK-GGPGEPSKASAPVTCKPRFVA 273
+V L E YEFRVIA N G PS+ S +TC+ A
Sbjct: 64 NILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 105 bits (265), Expect = 8e-27
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLS-SFVRSPA 1100
PP P+ +IT + +L W P GG IT+Y+VEK + G W K + S +
Sbjct: 11 IDPPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 1101 YDVFGLETNRQYRFRVRAENQYG-VSEPLELDNSITAKFPF 1140
+ V GL + Y FRV A+N G +S P E ++IT +
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 102 bits (257), Expect = 1e-25
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFV 1579
PP ++TL W P GG +IT+Y+VEK+D + W K + +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 1580 RVRNLAIGSTYEFRVMAENQYG-LSKPALTIDPIKAKHPFD 1619
V L + YEFRV+A+N G +S P+ D I + +
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
Score = 98.6 bits (246), Expect = 3e-24
Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
PP P P NIT+ + L+W P GG I Y+VEK D+ GRW+ +
Sbjct: 11 IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 134 A--ENLIEGHDYNFRVKAVNKIGE-SLPLVCQSPITAKDPF 171
L E Y FRV A N G S P IT +D
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 95.9 bits (239), Expect = 3e-23
Identities = 39/159 (24%), Positives = 52/159 (32%), Gaps = 65/159 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
DPP P IT+ +VTL W P++ GG +I YIV+KR G W+ AN +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
T+ LT
Sbjct: 71 TV--------------------------------SGLTED-------------------- 78
Query: 933 RLLEGTTYEFRVRAENLQG-------LSEPITTKEPVVA 964
YEFRV A+N G S+ IT ++ V A
Sbjct: 79 -----AAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 87.4 bits (217), Expect = 2e-20
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV--SLF 545
PP P N+T+ + L W P GG I YI+EK D+ G W A +
Sbjct: 11 IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 546 YDVPRLIHRKEYLFRVKAVNSIGE-SDTLETTKTTVARNEFD 586
+ V L Y FRV A N+ G S E + R++ +
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
Score = 82.4 bits (204), Expect = 1e-18
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 1614 AKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMA 1673
H PG P ++ T +++L W+KP + GG I YIVEKR + + +W+KA+ +
Sbjct: 4 HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63
Query: 1674 HIPDTSLKYT 1683
+I + +
Sbjct: 64 NILENEFTVS 73
Score = 63.9 bits (156), Expect = 3e-12
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 1136 AKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ DPPG+P ++ + TL W +P GG KI Y VE R
Sbjct: 4 HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGR 56
Score = 56.6 bits (137), Expect = 2e-09
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 1875 VLAYVLDVAE--DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAG-FSKPSSTS 1931
+ +Y+++ + + W AN + + + V L + YEFRV AKNAAG S PS S
Sbjct: 42 ITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPS 101
Query: 1932 K 1932
Sbjct: 102 D 102
Score = 55.0 bits (133), Expect = 6e-09
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 429 YIIEMAEYGLDNWKTV-PGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
YI+E + W + FTV GLTE Y FR+ +N GA P
Sbjct: 45 YIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISP-------- 96
Query: 488 PSPPEGP 494
PS P
Sbjct: 97 PSEPSDA 103
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB:
2w1z_A
Length = 377
Score = 136 bits (344), Expect = 2e-34
Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 53/239 (22%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK-------------- 1734
+G +++TG F + I++
Sbjct: 74 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133
Query: 1735 --------------EIDIMNQLHHPKLINLHDAFEDDDEM--VLIFEFLS------GGEL 1772
D++ K+I + D + ++ + G L
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL 193
Query: 1773 FERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDF 1832
+ + + QV + +H ++H ++P +I+ R V + F
Sbjct: 194 LSHSST-HKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRG--GVFLTGF 250
Query: 1833 GLATKLDPNEVVKISTGTAEFAAPEIVERE-----------PVGFYTDMWAVGVLAYVL 1880
+ V S+ + F PE+ R + F D WA+G++ Y +
Sbjct: 251 EHLVRDGARVV---SSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWI 306
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 134 bits (338), Expect = 2e-34
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 1694 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHPKLINLH 1751
EIG G+F V++ + +T A + + E ++E +++ L HP ++ +
Sbjct: 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 91
Query: 1752 DAFED----DDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN- 1806
D++E +VL+ E ++ G L + M + ++ RQ+ + ++ +H +
Sbjct: 92 DSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHTRTP 150
Query: 1807 -IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVG 1865
IIH D+K +NI +VK+ D GLAT + K GT EF APE+ E +
Sbjct: 151 PIIHRDLKCDNIFITGPTG-SVKIGDLGLATLKRASF-AKAVIGTPEFMAPEMYEEK-YD 207
Query: 1866 FYTDMWAVG 1874
D++A G
Sbjct: 208 ESVDVYAFG 216
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 135 bits (342), Expect = 2e-34
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH---NLEKELIRKEIDIMNQLHH 1744
+ L EIG G+FG V+ R+ + + A K + S N + + I KE+ + +L H
Sbjct: 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 113
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
P I + + L+ E+ G + + + E E+ + + ++H
Sbjct: 114 PNTIQYRGCYLREHTAWLVMEYCLGS-ASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 172
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP-NEVVKISTGTAEFAAPEIVEREP 1863
N+IH DVK NI+ VK+ DFG A+ + P N V GT + APE++
Sbjct: 173 HNMIHRDVKAGNIL--LSEPGLVKLGDFGSASIMAPANSFV----GTPYWMAPEVILAMD 226
Query: 1864 VGFYT---DMWAVGVLAY 1878
G Y D+W++G+
Sbjct: 227 EGQYDGKVDVWSLGITCI 244
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I membrane;
HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A
1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A
Length = 695
Score = 141 bits (358), Expect = 3e-34
Identities = 53/253 (20%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 1639 LVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGT 1698
+ ++ G Q++I + +W + ++ T + + + IG
Sbjct: 149 YIEEICQNLRGDVFQKFIESDKFTRFCQW------KNVELNIHLT---MNDFSVHRIIGR 199
Query: 1699 GAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID----------IMNQLHHPK 1746
G FG V+ CR+ TG ++A K L+K+ I ++ +++ P
Sbjct: 200 GGFGEVYGCRKADTGKMYAMKC------LDKKRIKMKQGETLALNERIMLSLVSTGDCPF 253
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++ + AF D++ I + ++GG+L ++ SEA++ Y ++ ++HMH +
Sbjct: 254 IVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMHNRF 312
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVER-EPVG 1865
+++ D+KP NI+ +V++ D GLA + S GT + APE++++
Sbjct: 313 VVYRDLKPANILLDEHG--HVRISDLGLA-CDFSKKKPHASVGTHGYMAPEVLQKGVAYD 369
Query: 1866 FYTDMWAVGVLAY 1878
D +++G + +
Sbjct: 370 SSADWFSLGCMLF 382
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 127 bits (320), Expect = 3e-34
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTT 1280
S P P+ P +T + +SL W+ P+ Y +E E + Y
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE 62
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+L +TV +LR KY+F+VIA N G PS+ + C PD +
Sbjct: 63 DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC------PDSGPSS 108
Score = 122 bits (308), Expect = 1e-32
Identities = 21/101 (20%), Positives = 37/101 (36%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P P +P + + ++L W P YI++ ++ + + +T
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
V NL +Y F+VIA N G S P + +
Sbjct: 68 VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 119 bits (300), Expect = 2e-31
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 575 TTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW 634
++ ++ P P P + G ++ L W P YI++ +E+ + Y
Sbjct: 2 SSGSSG-------PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYG 54
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
+ +L + +Y+F+VIA N G S PS+ + C
Sbjct: 55 FKPKYDG-EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104
Score = 117 bits (295), Expect = 6e-31
Identities = 25/108 (23%), Positives = 41/108 (37%)
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 226
P P P +T G + L+W+ P YI+E + + +
Sbjct: 1 GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60
Query: 227 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
A +V +L+ +Y+F+VIA N G PS+ TC +
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 108 bits (272), Expect = 7e-28
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P P + + L+L W+ P E +Y++E ++ S K
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
V+NL + Y+F+V+A N G S P+ ++ D + G
Sbjct: 68 VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP---DSGPSSG 109
Score = 108 bits (272), Expect = 8e-28
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
PS P P+ ++ SL W P +Y++E E +G+ K AY
Sbjct: 8 PSMPASPV-LTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 66
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
V L + +Y+F+V A N G S P E+ T G
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS---GPSSG 109
Score = 101 bits (254), Expect = 2e-25
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDVSGTYT 132
PS P P + + +L+W P + + Y++E + +G P D
Sbjct: 8 PSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 66
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 178
+NL Y F+V A N G+S P T D G
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS---GPSSG 109
Score = 90.5 bits (225), Expect = 2e-21
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-LFY 546
PS P P ++ L W P + YI+E + + G L Y
Sbjct: 8 PSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 66
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
V L +Y F+V A NS G+S+ E + T D +
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP---DSGPSS 108
Score = 81.6 bits (202), Expect = 2e-18
Identities = 27/154 (17%), Positives = 41/154 (26%), Gaps = 63/154 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P +P + + ++L W P D
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGT---------------PSDEGI------------ 40
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y++E + T G G+ P + D TV
Sbjct: 41 ---------------------------SYILEMEEETSGYGFKPKYD---GEDLAYTVKN 70
Query: 934 LLEGTTYEFRVRAENLQGLSEP------ITTKEP 961
L T Y+F+V A N +G S P T +
Sbjct: 71 LRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104
Score = 69.3 bits (170), Expect = 5e-14
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
P P +P + +SL WSKP YI+E + K D
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPK-YDGEDL 64
Query: 1679 S 1679
+
Sbjct: 65 A 65
Score = 60.0 bits (146), Expect = 7e-11
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL----F 484
YI+EM E +TVK L KY F++ N G S P + +
Sbjct: 42 YILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101
Query: 485 PDKPSPP 491
PD
Sbjct: 102 PDSGPSS 108
Score = 58.9 bits (143), Expect = 2e-10
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ P P P + +L W +P + Y +E +
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS 51
Score = 58.5 bits (142), Expect = 3e-10
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 1875 VLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
++Y+L++ E + + Y +D Y V +L + Y+F+V A N+ G S PS +
Sbjct: 39 GISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVE 97
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 134 bits (340), Expect = 5e-34
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
+D+L IG G++ V R +KT I+A K ++KEL+ ++ID +
Sbjct: 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKV------VKKELVNDDEDIDWVQTEKHV 62
Query: 1739 MNQ-LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
Q +HP L+ LH F+ + + + E+++GG+L + K+ E Y ++
Sbjct: 63 FEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISL 121
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
A+ ++HE+ II+ D+K +N++ + ++K+ D+G+ K ST GT + A
Sbjct: 122 ALNYLHERGIIYRDLKLDNVLLDSEG--HIKLTDYGMC-KEGLRPGDTTSTFCGTPNYIA 178
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI+ E GF D WA+GVL +
Sbjct: 179 PEILRGEDYGFSVDWWALGVLMF 201
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 132 bits (335), Expect = 5e-34
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
Query: 1696 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFE 1755
+G G +G+V+ R+ A K IP + + + +EI + L H ++ +F
Sbjct: 30 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 89
Query: 1756 DDDEMVLIFEFLSGGELFE--RITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVK 1813
++ + + E + GG L R K +E + Y +Q+ E +K++H+ I+H D+K
Sbjct: 90 ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIK 149
Query: 1814 PENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIS-TGTAEFAAPEIVEREPVGFYT---D 1869
+N++ T + +K+ DFG + +L + TGT ++ APEI+++ P G Y D
Sbjct: 150 GDNVLINTYSGV-LKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRG-YGKAAD 207
Query: 1870 MWAVG 1874
+W++G
Sbjct: 208 IWSLG 212
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 126 bits (319), Expect = 5e-34
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
DKP P P I S ++W PP D+GG+ I YVVE E + G ++
Sbjct: 14 CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGA 73
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + L YR RV + G S E S+ + P G
Sbjct: 74 TREHLCDRLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTPAVSGPSSG 120
Score = 114 bits (287), Expect = 9e-30
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLH-ADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDY-N 1563
+G D+P P + S + W PP+DNGG+ I YVVE + N
Sbjct: 3 SGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSN 62
Query: 1564 STVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
W + S T + L G Y RV + G S + + + + P V G
Sbjct: 63 GNKWEMIYSGATREHL-CDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTP-AVSGP 117
Query: 1624 P 1624
Sbjct: 118 S 118
Score = 109 bits (275), Expect = 4e-28
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRG-TWSDAGMTVS 543
PDKP P P + S K++W P D+GGA I Y++E + S G W +
Sbjct: 15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGAT 74
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ RL Y RV ++ G+S E+
Sbjct: 75 REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Score = 108 bits (272), Expect = 1e-27
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQK 1364
G S + C + KP P P V +I S ++W PPK +GGA I Y+V+
Sbjct: 1 GSSGSSGVVEFTTCPD---KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 1365 R--KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
G W S H L+ G Y RV +++ G S
Sbjct: 58 AEGSNGNKWEMIYSGATRE--HLCDRLNPGCFYRLRVYCISDGGQSAV 103
Score = 106 bits (266), Expect = 6e-27
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-RWVPMGDVSGTYT 132
P P P I S + W P+D+GG I YVVE + G +W + +
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREH 77
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 178
+ L G Y RV ++ G+S + + P G
Sbjct: 78 LCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPSSG 120
Score = 104 bits (260), Expect = 4e-26
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 1224 DPPDAPSQPEVTG-YSPSSVSLAWNPPANHGGRPITGYYVEKRE--RGGEWLRANNYPTT 1280
D P P +P V G S + W+PP ++GG I Y VE E G +W + T
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
L G Y RV I++ G S+ + + P
Sbjct: 76 E--HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLV-------QTPAVSGPS 118
Score = 102 bits (255), Expect = 2e-25
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVK-DWGEDFVDLAWKPPLNDGGSPITDYIIQK 626
G S + + T D+P P KP+VK + W PP ++GG+ I Y+++
Sbjct: 1 GSSGSSGVVEFTTCP---DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 627 KEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
E N + A + L G Y RV +++ G S S++ +
Sbjct: 58 AEGSNGNKWEMIYSGA-TREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLV 109
Score = 100 bits (250), Expect = 1e-24
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEK 212
G S T D +P P +P+V + W PPK +GG+ I++Y++E
Sbjct: 1 GSSGSSGVVEFTTCPD---KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 213 K--PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
WE L G Y RV ++ GG S++ T
Sbjct: 58 AEGSNGNKWEMIYSGAT--REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 68.2 bits (167), Expect = 2e-13
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 813 KPDPPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQKR--KKGGDWVDANSVPVPN 869
KP P P V +I S ++W PPK +GGA I Y+V+ G W S
Sbjct: 17 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATRE 76
Score = 64.0 bits (156), Expect = 5e-12
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP---IT 957
YV+E + ++G W S RL G Y RV + G S +
Sbjct: 52 KYVVEMAEGSNGNKWEMIY---SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLL 108
Query: 958 TKEPVVAKNQYG 969
+ P V+ G
Sbjct: 109 VQTPAVSGPSSG 120
Score = 63.6 bits (155), Expect = 7e-12
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF-- 484
++Y++EMAE N + L G Y R+ + G S + L
Sbjct: 51 NKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Query: 485 -PDKPSPPEG 493
P P G
Sbjct: 111 TPAVSGPSSG 120
Score = 60.1 bits (146), Expect = 9e-11
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1619 DVPGAPGAPKGV-DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
D PG P P S + W P+ +GG+ I +Y+VE S+
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNK 65
Score = 54.7 bits (132), Expect = 8e-09
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIV-DWDTNNATLMWDRPRTDGGSKIQGYKVEF 1181
G S + T P P +P + +++ + WD P+ +GG+ I Y VE
Sbjct: 1 GSSGSSGVVEFTT---CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 1182 RSTRT 1186
Sbjct: 58 AEGSN 62
Score = 50.1 bits (120), Expect = 4e-07
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 1875 VLAYVLDVAEDTN---WRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ YV+++AE +N W + ++ L G Y RV + G S S +
Sbjct: 50 INKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active,
ribosomal S6 kinase, activation, alternative initiation,
ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB:
3a61_A* 3a60_A*
Length = 327
Score = 133 bits (336), Expect = 1e-33
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 13/200 (6%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIP----VSHNLEKELIRKEIDIMN 1740
+ +++L +G G +G V + R+ TG IFA K + V + + + E +I+
Sbjct: 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILE 76
Query: 1741 QLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
++ HP +++L AF+ ++ LI E+LSGGELF ++ + E Y+ ++ A+
Sbjct: 77 EVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER-EGIFMEDTACFYLAEISMALG 135
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEI 1858
H+H+K II+ D+KPENIM + +VK+ DFGL K ++ T GT E+ APEI
Sbjct: 136 HLHQKGIIYRDLKPENIMLNHQG--HVKLTDFGLC-KESIHDGTVTHTFCGTIEYMAPEI 192
Query: 1859 VEREPVGFYTDMWAVGVLAY 1878
+ R D W++G L Y
Sbjct: 193 LMRSGHNRAVDWWSLGALMY 212
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 134 bits (338), Expect = 2e-33
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
+D+L IG G++ V R +KT I+A + ++KEL+ ++ID +
Sbjct: 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRV------VKKELVNDDEDIDWVQTEKHV 105
Query: 1739 MNQ-LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
Q +HP L+ LH F+ + + + E+++GG+L + K+ E Y ++
Sbjct: 106 FEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISL 164
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
A+ ++HE+ II+ D+K +N++ + ++K+ D+G+ K ST GT + A
Sbjct: 165 ALNYLHERGIIYRDLKLDNVLLDSEG--HIKLTDYGMC-KEGLRPGDTTSTFCGTPNYIA 221
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI+ E GF D WA+GVL +
Sbjct: 222 PEILRGEDYGFSVDWWALGVLMF 244
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 131 bits (331), Expect = 3e-33
Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPK 1746
++++E +G G +G V++ R KTG + A K + V+ + E+E I++EI+++ + HH
Sbjct: 24 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRN 82
Query: 1747 LINLHDAF------EDDDEMVLIFEFLSGGELFERITA-PDYKMSEAEVINYMRQVCEAV 1799
+ + AF DD++ L+ EF G + + I + E + R++ +
Sbjct: 83 IATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL 142
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPE 1857
H+H+ +IH D+K +N++ T N+ VK++DFG++ +LD V + +T GT + APE
Sbjct: 143 SHLHQHKVIHRDIKGQNVLL-TENA-EVKLVDFGVSAQLD-RTVGRRNTFIGTPYWMAPE 199
Query: 1858 IV--EREPVGFY---TDMWAVGVLAY 1878
++ + P Y +D+W++G+ A
Sbjct: 200 VIACDENPDATYDFKSDLWSLGITAI 225
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 131 bits (333), Expect = 4e-33
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
++ L +G G+FG V + T ++A K L+K+++ +++ +
Sbjct: 20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKI------LKKDVVIQDDDVECTMVEKRV 73
Query: 1739 MNQ-LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
+ P L LH F+ D + + E+++GG+L I + E + Y ++
Sbjct: 74 LALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAI 132
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
+ + K II+ D+K +N+M + ++K+ DFG+ K + + V T GT ++ A
Sbjct: 133 GLFFLQSKGIIYRDLKLDNVMLDSEG--HIKIADFGMC-KENIWDGVTTKTFCGTPDYIA 189
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI+ +P G D WA GVL Y
Sbjct: 190 PEIIAYQPYGKSVDWWAFGVLLY 212
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 124 bits (312), Expect = 5e-33
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 586 DEPDAPEKP--TVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPAN 643
P APE P T+ ++L W P DG SP+ YI++ E P+ + V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIM 681
T V + L + Y+FR+ AVN+ G + S ++ +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Score = 114 bits (288), Expect = 9e-30
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 1325 KPDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW-VDANSVPVPN 1381
P PE P + + ++ L+W P DG + + YI++ + W V SV
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 1382 PVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
TV L Y FR+ AVN+ G + K + V + E
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117
Score = 113 bits (286), Expect = 2e-29
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 172 GRPDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPAN 228
P P P T++ + ++L WT P DG SP+ +YI+E PW V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
T+ +V L Y+FR+ AVN G G+ SK + V+
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Score = 113 bits (284), Expect = 3e-29
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 1224 DPPDAPSQPEVTGYSPS--SVSLAWNPPANHGGRPITGYYVEKRERGGEW-LRANNYPTT 1280
P AP P T + +++L W P + G P+ Y +E E W + +
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ TV L Y+FR+ A+N+ G G+ SK T+ V P +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV-----SLPESGPSS 120
Score = 105 bits (265), Expect = 9e-27
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 1506 AGFDTATLHVRVLDRPHPPEN--LHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYN 1563
+G + H+RV PH PE+ ++ L WT P D G S + Y++E + N
Sbjct: 3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENN 61
Query: 1564 STVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
+ ++S V V+ L +Y+FR+ A N G + + + +
Sbjct: 62 APWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP-----ES 116
Query: 1623 APGA 1626
P +
Sbjct: 117 GPSS 120
Score = 104 bits (262), Expect = 3e-26
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 1038 ITDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF- 1095
+ P P+ P +S + + +L+W P DG SP+ Y++E E+ + L+S
Sbjct: 14 VRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVD 72
Query: 1096 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
++ + V GL R Y+FR+ A N G + + ++ P
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP-----ESGP 118
Score = 94.3 bits (235), Expect = 1e-22
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 73 IPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
+P PE P S + + + NL W P DG + ++ Y++E + V + V
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 132 TRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
T L+ Y FR+ AVN +G+ ++ +
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
Score = 89.7 bits (223), Expect = 5e-21
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 486 DKPSPPEGP-LEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-- 542
P PE P +S V + + L+W P DG +P++ YI+E + +
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
+ V L+ + Y FR+ AVN +G+ + T+ P
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL-----PESGP 118
Score = 66.2 bits (162), Expect = 7e-13
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 813 KPDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW-VDANSVPVPN 869
P PE P + + ++ L+W P DG + + YI++ + W V SV
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 870 PVHTL 874
T+
Sbjct: 76 TSVTV 80
Score = 65.5 bits (160), Expect = 2e-12
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----- 955
Y++E + W + V P TV L+ +Y+FR+ A N G +
Sbjct: 52 RYILEMS--ENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTE 109
Query: 956 -ITTKEPV 962
++ E
Sbjct: 110 RVSLPESG 117
Score = 62.8 bits (153), Expect = 1e-11
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1619 DVPGAPGAPKGV--DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1676
+P AP P +I+L W+KP DG SP+ RYI+E + + +
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 1677 DTS 1679
TS
Sbjct: 75 ATS 77
Score = 54.7 bits (132), Expect = 9e-09
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYG 475
+ P+ RYI+EM+E + PK TVKGL + Y FR+ N G
Sbjct: 46 GNSPL-----IRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVG 100
Query: 476 ASEPLDPLFP--DKPSPP 491
+ S P
Sbjct: 101 KGQFSKDTERVSLPESGP 118
Score = 50.8 bits (122), Expect = 2e-07
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1875 VLAYVLDV--AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
++ Y+L++ + K + V L+ Y+FR+ A N G + S ++
Sbjct: 50 LIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTE 109
Score = 48.1 bits (115), Expect = 2e-06
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 1141 TVPDPPGQPQIV--DWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+P P P + L W +P DG S + Y +E
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNA 62
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A
2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 127 bits (320), Expect = 5e-33
Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 26/204 (12%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA-GDDY 2149
+ PRF P G F C+ P + W +++ + + G
Sbjct: 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 2150 TFVINRTKM-EDRGEYIIRAENHYGYREEVVFLNVQRKYDL----PVIHY--KNHRRANK 2202
I + D Y A N+ G L V R+ + P I +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 2203 YDVI--------------WLHNNKEIKPSND---FAYSSVAHVHTLKIAEIFPEDSGVYT 2245
W + + SN+ + L+I + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 2246 CEAFNDEGESFS-SCTLLVQVSWY 2268
C A N G +S L V+ + +
Sbjct: 184 CVATNSAGTRYSAPANLYVRGTKH 207
Score = 105 bits (264), Expect = 2e-25
Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 35/206 (16%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ PRF P G F C+ P + W +++ + +
Sbjct: 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG--- 60
Query: 2068 FYSSLRKLQIDRFSIQD-------------------------TSFDRRQAAPRFVIKPQS 2102
S L+I + P + PQ
Sbjct: 61 ---SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS---VKFMKRYAGDDYTFVINRTKME 2159
++ C P +TWF + + S + + + I +++
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 2160 DRGEYIIRAENHYGYRE-EVVFLNVQ 2184
D+G+Y A N G R L V+
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYVR 203
Score = 71.4 bits (175), Expect = 1e-13
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 23/172 (13%)
Query: 1375 NSVPVPNPVHTVGNLSEGEEYTFRV--------------IAVNEAGNSEPGKQSGPVIVE 1420
V N V +G R+ +A N G S + V
Sbjct: 43 KGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS---VSTRLTVL 99
Query: 1421 EQPNKPVMD---LSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD--TRVH 1475
+ P G + V+ ++ P P WF + +D S+ R+
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD-TATLHVRVLDRPHPPEN 1526
+ + + +L ++ S+ SD G+Y N AG +A ++ V H +
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 71.4 bits (175), Expect = 1e-13
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 44/147 (29%)
Query: 2204 DVIWLHNNKEIKPSNDF-AYSSVAHVHTLKIAEI-FPEDSGVYTCEAFNDEGESFSSCTL 2261
++W K++ L+I + P D +Y C A N+ GE S L
Sbjct: 37 KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
Query: 2262 LV----------------------------------------QVSWYKDGNPV--SDDPA 2279
V +++W+KD PV S++
Sbjct: 97 TVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNG 156
Query: 2280 TYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ + ++I + D G+Y
Sbjct: 157 RIKQLRSESIGALQIEQSEESDQGKYE 183
Score = 65.2 bits (159), Expect = 2e-11
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
P+ D +G + + Q G+P P++ W GK++ G ++
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 332 VNTVNTKR-SDSGTYHLELRNTSGRDEGSFTVTVLET 367
+ + D Y N G S +TVL
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE 101
Score = 58.3 bits (141), Expect = 3e-09
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (4%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRF--VAPKIKTPLKDIIIKAGKILNVEIQFIGEP 301
+ +A N G V + + P I + +++ + + G P
Sbjct: 78 IYECVASNNVGEIS-VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 302 PPEVTWTIDGKELKT--DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE-G 358
PE+TW D + T ++ R + ++ SD G Y N++G
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Query: 359 SFTVTVLET 367
+ V T
Sbjct: 197 PANLYVRGT 205
Score = 57.9 bits (140), Expect = 5e-09
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P+ D +G + + Q G+P P++ W GK++ G +++
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 748 NTVNTKR-SDSGTYHLELRNTSGRDEGSFTI 777
+ D Y N G S +
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
Score = 55.6 bits (134), Expect = 3e-08
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRF--LAPKIKTPLKDIIIKAGKILNVEIQFIGEP 716
+ +A N G ++ + + P I + +++ + + G P
Sbjct: 78 IYECVASNNVGEIS-VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 717 PPEVTWTIDGKELKT--DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
PE+TW D + T ++ R + ++ SD G Y N++G
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194
Score = 51.0 bits (122), Expect = 1e-06
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR- 1492
D T +G S P+P W + + V + + + L ++ +
Sbjct: 14 VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTP 73
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
D Y N G + + + VL P
Sbjct: 74 RDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106
Score = 39.8 bits (93), Expect = 0.005
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILST-TLDDVGQYS--AQ--MGGIIAAFSL 2318
++ W K G VS+ G ++I T D Y A +G I + L
Sbjct: 37 KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
Query: 2319 NVVKES 2324
V++E
Sbjct: 97 TVLRED 102
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 124 bits (312), Expect = 5e-33
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKK 627
G S + + P+AP++PT+ E V + W P +GG PI + ++ K
Sbjct: 1 GSSGSSGSQ---PDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYK 56
Query: 628 E-KGNPYWMNALE-VPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQ 684
+ K W+ A +P ++ V+I L KG Y+FRV A+N G SEPS S +
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 121 bits (305), Expect = 4e-32
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRANN 1276
PP+AP +P ++ S +SV + W P N GG PI + VE ++ G+W+ A +
Sbjct: 11 DHGRLSPPEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYKKLKKVGDWILATS 69
Query: 1277 Y-PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
P + L+ + L +G Y+FRV A+N G +PS P+ P
Sbjct: 70 AIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG----SGPSSG 121
Score = 120 bits (303), Expect = 7e-32
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 1311 SKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-- 1368
S + + P+ P+ P + ++ SV ++W P +GG I+ + V+ +K
Sbjct: 3 SGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKV 61
Query: 1369 GDWVDANS-VPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
GDW+ A S +P + L +G Y FRV A+N G SEP S P +V
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSG 117
Score = 117 bits (296), Expect = 7e-31
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 220
P+ P +PT++ + V + W P +GG PI + +E K W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWI 65
Query: 221 KAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
A +P + + + L++G Y+FRV A+N G EPS S P
Sbjct: 66 LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 102 bits (255), Expect = 3e-25
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE-SATGFWSKLSSFV-- 1096
P P P +S + S ++W P +GG PI ++ VE + G W +S +
Sbjct: 16 SPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDP 1145
+ ++ GLE Y+FRVRA N G SEP P
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS--GPSS 120
Score = 98.2 bits (245), Expect = 5e-24
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 1565
+G + L P P+ + S+ + W P + GG I ++ VE K
Sbjct: 3 SGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYKKLKKV 61
Query: 1566 -VWTKVSSYV--TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
W +S + + V + L G +Y+FRV A N G S+P+ P G
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSSG 121
Score = 87.8 bits (218), Expect = 2e-20
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE-KMDISRGTWSDAGMTV-- 542
P P+ P +S ++ S ++W P +GG PI + +E K G W A +
Sbjct: 16 SPPEAPDRP-TISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 543 -SLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
L ++ L Y FRV+A+N +GES+
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESE 103
Score = 87.0 bits (216), Expect = 4e-20
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGD-VSGTY 131
P P+ P S +++S + W PR +GG I + VE K + G W+ + +
Sbjct: 18 PEAPDRP-TISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 132 TRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
E L +G Y FRV+A+N +GES P P
Sbjct: 76 LSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 71.2 bits (175), Expect = 2e-14
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
+ +E + L G W+ A + + P + L +G +Y+FRVRA N+ G SEP
Sbjct: 50 SFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSR 109
Query: 961 PVVAK 965
P V
Sbjct: 110 PYVVS 114
Score = 70.9 bits (174), Expect = 2e-14
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANS-VPVPN 869
P+ P+ P + ++ SV ++W P +GG I+ + V+ +K GDW+ A S +P
Sbjct: 17 PPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 870 PVHTL 874
+
Sbjct: 76 LSVEI 80
Score = 70.9 bits (174), Expect = 2e-14
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKR-LISDDKWI 1668
P AP P ++E S+ + W PR +GG PIQ + VE + L WI
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWI 65
Query: 1669 KASMAHIPDTSLKYT 1683
A+ IP + L
Sbjct: 66 LATS-AIPPSRLSVE 79
Score = 62.0 bits (151), Expect = 3e-11
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
G S S + P+ P +P I + + W PR +GG IQ ++VE++
Sbjct: 1 GSSGS---SGSQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYK 56
Query: 1183 STRTATD 1189
+ D
Sbjct: 57 KLKKVGD 63
Score = 54.7 bits (132), Expect = 8e-09
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDN-WKTVPGFCP--KEFFTVKGLTEGKKYVFRIRTENM 473
PI + +E + W P + + GL +G Y FR+R NM
Sbjct: 44 GGFPI-----QSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNM 98
Query: 474 YGASEP---LDPLFPDKPSPPEG 493
G SEP P P G
Sbjct: 99 LGESEPSAPSRPYVVSGSGPSSG 121
Score = 54.3 bits (131), Expect = 1e-08
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 1875 VLAYVL---DVAEDTNWRVANDYL-VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ ++ + + + +W +A + + + L +G Y+FRV+A N G S+PS+
Sbjct: 48 IQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAP 107
Query: 1931 SK 1932
S+
Sbjct: 108 SR 109
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET:
TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB:
2jed_A*
Length = 345
Score = 131 bits (331), Expect = 6e-33
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-IM----- 1739
+ + + + +G G+FG V +KT FA K L+K+++ +++ M
Sbjct: 17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKA------LKKDVVLMDDDVECTMVEKRV 70
Query: 1740 --NQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
HP L ++ F+ + + + E+L+GG+L I + K + Y ++
Sbjct: 71 LSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIIL 129
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
++ +H K I++ D+K +NI+ ++K+ DFG+ K + K +T GT ++ A
Sbjct: 130 GLQFLHSKGIVYRDLKLDNILLDKDG--HIKIADFGMC-KENMLGDAKTNTFCGTPDYIA 186
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI+ + D W+ GVL Y
Sbjct: 187 PEILLGQKYNHSVDWWSFGVLLY 209
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90
ribosomal S6 kinase 2, ATP- binding, nucleotide-binding,
phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB:
2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 130 bits (329), Expect = 8e-33
Identities = 60/199 (30%), Positives = 112/199 (56%), Gaps = 13/199 (6%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIPVSHNLEKELI--RKEIDIMNQL 1742
+++L+ +G G+FG V ++ ++A K + + ++ + + E DI+ ++
Sbjct: 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV 83
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
+HP ++ LH AF+ + ++ LI +FL GG+LF R++ + +E +V Y+ ++ A+ H+
Sbjct: 84 NHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHL 142
Query: 1803 HEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIV 1859
H II+ D+KPENI+ + ++K+ DFGL+ K + K + GT E+ APE+V
Sbjct: 143 HSLGIIYRDLKPENILL---DEEGHIKLTDFGLS-KESIDHEKKAYSFCGTVEYMAPEVV 198
Query: 1860 EREPVGFYTDMWAVGVLAY 1878
R D W+ GVL +
Sbjct: 199 NRRGHTQSADWWSFGVLMF 217
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis,
ATP-binding, cytoplasm, endoplasmic reticulum,
nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo
sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 131 bits (331), Expect = 1e-32
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------- 1737
+ L+ IG G+FG V R + +A K L+K+ I +KE
Sbjct: 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKV------LQKKAILKKKEEKHIMSERNV 91
Query: 1738 IMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
++ + HP L+ LH +F+ D++ + ++++GGELF + + E Y ++
Sbjct: 92 LLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQR-ERCFLEPRARFYAAEIAS 150
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
A+ ++H NI++ D+KPENI+ ++ ++ + DFGL K + ST GT E+ A
Sbjct: 151 ALGYLHSLNIVYRDLKPENILLDSQG--HIVLTDFGLC-KENIEHNSTTSTFCGTPEYLA 207
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PE++ ++P D W +G + Y
Sbjct: 208 PEVLHKQPYDRTVDWWCLGAVLY 230
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 130 bits (330), Expect = 1e-32
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------- 1737
D+++ + +G G+FG V R ++TG+++A K L+K++I +++
Sbjct: 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKV------LKKDVILQDDDVECTMTEKRI 76
Query: 1738 IMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
+ +HP L L F+ D + + EF++GG+L I + EA Y ++
Sbjct: 77 LSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQK-SRRFDEARARFYAAEIIS 135
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
A+ +H+K II+ D+K +N++ + K+ DFG+ K V +T GT ++ A
Sbjct: 136 ALMFLHDKGIIYRDLKLDNVLLDHEG--HCKLADFGMC-KEGICNGVTTATFCGTPDYIA 192
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI++ G D WA+GVL Y
Sbjct: 193 PEILQEMLYGPAVDWWAMGVLLY 215
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 132 bits (334), Expect = 2e-32
Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
+ ++ L+ +G G FG V +E+ TG +A K L+KE+I + E+ +
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKI------LKKEVIVAKDEVAHTLTENRV 201
Query: 1739 MNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEA 1798
+ HP L L +F+ D + + E+ +GGELF ++ + SE Y ++ A
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSA 260
Query: 1799 VKHMH-EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
+ ++H EKN+++ D+K EN+M ++K+ DFGL K + + T GT E+ A
Sbjct: 261 LDYLHSEKNVVYRDLKLENLMLDKDG--HIKITDFGLC-KEGIKDGATMKTFCGTPEYLA 317
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PE++E G D W +GV+ Y
Sbjct: 318 PEVLEDNDYGRAVDWWGLGVVMY 340
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 124 bits (313), Expect = 3e-32
Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 21/192 (10%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
A + I G+S FTC I + +++ + + + + G
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREE-VVFLNVQRKYDLPVI--HYKNHRRANKYDVI-- 2206
I +ED G Y +A + G +E V L + +K D
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK---LTFREVVSPQEFKQGEDAEVV 117
Query: 2207 ------------WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
WL++N+E+ +D ++ +A+ + L+I I D G+Y CE +
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARG 176
Query: 2255 SFSSCTLLVQVS 2266
++V V+
Sbjct: 177 EIDFRDIIVIVN 188
Score = 103 bits (259), Expect = 5e-25
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 30/197 (15%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
A + I G+S FTC I + +++ + + + + G
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR- 59
Query: 2069 YSSLRKLQIDRFSIQDT-----------------SFDRR-QAAPRFVIKPQSAFCYEGQS 2110
L I +I+D + F +G+
Sbjct: 60 ------LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 113
Query: 2111 VKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN 2170
+ CRV + P ++W ++N+E+ + + I D G Y
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVTTISDN-RFAMLANNNLQILNINKSDEGIYRCEGRV 172
Query: 2171 HYG----YREEVVFLNV 2183
+R+ +V +NV
Sbjct: 173 EARGEIDFRDIIVIVNV 189
Score = 57.9 bits (140), Expect = 3e-09
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
++ L + + G+ IGEP + G+++ + R V G + +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRL 60
Query: 333 NTVNTKRSDSGTYHLELRNTSGRD-EGSFTVTVLE 366
N D+G Y + + G+ E + + + +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Score = 57.9 bits (140), Expect = 3e-09
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 9/119 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A + G + +A+ + + + + K G+ V + P P V+W
Sbjct: 76 QATDAKG--QTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
Query: 308 TIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
+E+ R + + I +N +SD G Y E R + + + V+
Sbjct: 131 LYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 57.1 bits (138), Expect = 5e-09
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ + GE + P+ ++ I + RV Q + L + N+
Sbjct: 10 SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRLTIYNANIE 68
Query: 1494 DGGQYRLQLKNPAG-FDTATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
D G YR Q + G AT+ + + + + G+ +
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEV 116
Score = 54.8 bits (132), Expect = 3e-08
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
++ L + + G+ IGEP + G+++ + R V G + +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRL 60
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDE 772
N D+G Y + + G+ +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQ 85
Score = 53.6 bits (129), Expect = 8e-08
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
A + G ++ + I + + + K G+ V + P P V+W
Sbjct: 76 QATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
Query: 723 TIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG 769
+E+ R + + I +N +SD G Y E R +
Sbjct: 131 LYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEAR 175
Score = 52.5 bits (126), Expect = 2e-07
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS 2054
F +G+ + CRV + P ++W ++N+E+
Sbjct: 94 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI 140
Score = 49.8 bits (119), Expect = 2e-06
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
+R A + G + + + + + ++ K GED + +
Sbjct: 72 IYRCQATDAKG--QTQEATVVLEIYQKLTFREVV-------SPQEFKQGEDAEVVCRVSS 122
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--FDT 1510
P PA W ++ + L + +L + N +SD G YR + + A D
Sbjct: 123 SPAPAVSWLYHNEEVTTISDNRFAML--ANNNLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 1511 ATLHVRV 1517
+ V V
Sbjct: 181 RDIIVIV 187
Score = 35.5 bits (82), Expect = 0.12
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ G + + G ++ I + ++D G Y
Sbjct: 33 IDWYNPQGEKIISTQ-RVVVQKEGVRSRLTIYNANIEDAGIYR 74
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein,
ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 130 bits (328), Expect = 3e-32
Identities = 38/206 (18%), Positives = 86/206 (41%), Gaps = 17/206 (8%)
Query: 1688 DHYDILEEIGTGA--FGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLH 1743
Y++L IG G V+ R + TG + I + + + ++ E+ + +
Sbjct: 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFN 84
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITA-PDYKMSEAEVINYMRQVCEAVKHM 1802
HP ++ F D+E+ ++ F++ G + I M+E + ++ V +A+ ++
Sbjct: 85 HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYI 144
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPN--------EVVKISTGTAEFA 1854
H +H VK +I+ V + + + + K S +
Sbjct: 145 HHMGYVHRSVKASHIL--ISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWL 202
Query: 1855 APEIVEREPVG--FYTDMWAVGVLAY 1878
+PE++++ G +D+++VG+ A
Sbjct: 203 SPEVLQQNLQGYDAKSDIYSVGITAC 228
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 121 bits (306), Expect = 3e-32
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRE----RGGEWLRA 1274
P + P P+ ++ P SV+L + P + G I+ + VE + G EWL
Sbjct: 11 SGVPPELPGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLI 69
Query: 1275 NNYPT--TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ + V DL Y FR+ +N G PS+P+ +Q P +
Sbjct: 70 HQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT-----LQSGPSS 123
Score = 118 bits (299), Expect = 2e-31
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 216
I++ P P P +++ G V L++ P DG + IS++++E +
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEE 65
Query: 217 -GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+ P + VPDL Y FR+ VN G PS+ S +
Sbjct: 66 WLLIHQLSNEPDARSME-VPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Score = 117 bits (296), Expect = 6e-31
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKK 627
G S ++ T + + P P + + G V L ++P DG + I+ ++++ +
Sbjct: 1 GSS---GSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQ 56
Query: 628 EK---GNPYWMNALEVP--ANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMC 682
W+ ++ + +++PDL Y FR+ VN G S PS S I
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Query: 683 KQ 684
Q
Sbjct: 117 LQ 118
Score = 113 bits (284), Expect = 3e-29
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 1311 SKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKK--- 1367
S + + P PP + I SVTL +RP +DG I ++V+ +
Sbjct: 3 SGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVG 61
Query: 1368 -GGDWVDANSVPVPNPV--HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
G +W+ + + V +L+ Y+FR+ VN G S P + S + +
Sbjct: 62 EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSG 120
Score = 100 bits (250), Expect = 1e-24
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG------FWSKLS 1093
+ P PP +S+I P S +L ++P DG + I+ ++VE G +LS
Sbjct: 16 ELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 73
Query: 1094 SFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + + +V L Y FR+R N G S P + I T+ P
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-----TLQSGPS 122
Score = 95.5 bits (238), Expect = 5e-23
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 1510 TATLHVRV-LDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNS---- 1564
+ T+ V + P PP NL S+TL + P D G + I+ ++VE +
Sbjct: 6 SGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGE 64
Query: 1565 --TVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
+ ++S+ + V +L + Y FR+ N G S P+ I+
Sbjct: 65 EWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL-----QS 119
Query: 1623 APGA 1626
P +
Sbjct: 120 GPSS 123
Score = 85.5 bits (212), Expect = 2e-19
Identities = 31/163 (19%), Positives = 43/163 (26%), Gaps = 54/163 (33%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDAN 863
I V P PP + I SVTL +RP +DG I ++V+ +
Sbjct: 8 TISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQ---------- 56
Query: 864 SVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNH-V 922
+ G W+
Sbjct: 57 ------------------------------------------VGVVGEGEEWLLIHQLSN 74
Query: 923 SPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
P VP L T Y FR+R N+ G S P +
Sbjct: 75 EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117
Score = 84.7 bits (210), Expect = 3e-19
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 475 GASEPLDPLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI 530
G+S + P+ P PP +SN+ S L +R P DG I +++E
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVG 58
Query: 531 SRGTWSD-------AGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
G + + + +VP L Y FR++ VN +G S
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSP 106
Score = 80.1 bits (198), Expect = 1e-17
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-------VPMGD 126
P PP SNI S L++R P DG T I ++VE G +
Sbjct: 18 PGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNE 75
Query: 127 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 158
+L Y+FR++ VN +G S P
Sbjct: 76 PDARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107
Score = 68.9 bits (169), Expect = 1e-13
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKR---LISDDK 1666
I + P ++PG P + S++L + +P +DG + I R++VE + + ++
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQVGVVGEGEE 65
Query: 1667 WIKASMAHIPDTSLKYT 1683
W+ +
Sbjct: 66 WLLIHQLSNEPDARSME 82
Score = 61.6 bits (150), Expect = 3e-11
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
G S +I++ P +P PP I + + TL + RP DG + I + VE +
Sbjct: 1 GSSGSSG---TISSGVPPELPGPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQ 56
Query: 1183 STRTATD 1189
Sbjct: 57 VGVVGEG 63
Score = 54.3 bits (131), Expect = 1e-08
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 13/84 (15%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWK------TVPGFCPKEFFTVKGLTEGKKYVFRIRT 470
I SR+++E + + + V L Y FR+R
Sbjct: 44 GKTSI-----SRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ 98
Query: 471 ENMYGASEPLDP--LFPDKPSPPE 492
N+ G S P P S P
Sbjct: 99 VNIVGTSPPSQPSRKIQTLQSGPS 122
Score = 45.4 bits (108), Expect = 2e-05
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 1881 DVAEDTNWRVAN--DYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
V E W + + + V L Y FR++ N G S PS S+
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSR 112
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 129 bits (326), Expect = 4e-32
Identities = 45/190 (23%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDIMNQLHHPK 1746
D ++ + E+G G GVV + + +G + A K I + I +E+ ++++ + P
Sbjct: 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH-EK 1805
++ + AF D E+ + E + GG L +++ ++ E + V + + ++ +
Sbjct: 93 IVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH 151
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVG 1865
I+H DVKP NI+ +R +K+ DFG++ +L + + GT + +PE ++
Sbjct: 152 KIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLI-DSMANSFVGTRSYMSPERLQGTHYS 208
Query: 1866 FYTDMWAVGV 1875
+D+W++G+
Sbjct: 209 VQSDIWSMGL 218
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 124 bits (312), Expect = 5e-32
Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 27/196 (13%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF--MKRYAGDDYT 2150
AP F + ++ + C+V P + W+ +E+ ++ + G +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRA--NKY----- 2203
+I +D Y +RA N G L V+ IH +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP---AKIHLPKTLEGMGAVHALRGE 120
Query: 2204 --------------DVIWLHNNKEIKPSNDFA-YSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
+ W I + + + + + + +D+G Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 2249 FNDEGESFSSCTLLVQ 2264
N G + L V
Sbjct: 181 KNRFGIDQKTVELDVA 196
Score = 117 bits (295), Expect = 9e-30
Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 28/198 (14%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
AP F + ++ + C+V P + W+ +E+ +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG---- 59
Query: 2070 SSLRKLQIDRFSIQDT---------SFDRRQA-------------APRFVIKPQSAFCYE 2107
+L I + D P+ + +
Sbjct: 60 -GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT-FVINRTKMEDRGEYII 2166
G+ V P +TW + + + + N + +D G Y++
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 2167 RAENHYGYREEVVFLNVQ 2184
A+N +G ++ V L+V
Sbjct: 179 CAKNRFGIDQKTVELDVA 196
Score = 80.9 bits (200), Expect = 4e-17
Identities = 27/162 (16%), Positives = 42/162 (25%), Gaps = 46/162 (28%)
Query: 2204 DVIWLHNNKEIKPSNDF--AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
V W KEI H L IA + +D+ VY A N G + +L
Sbjct: 35 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 2262 LVQ--------------------------------------VSWYKDGNPVSDDPATYQF 2283
V+ ++W K + + ++ YQ
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGH-YQV 153
Query: 2284 TQIGQTYKMKILS-TTLDDVGQYSAQM----GGIIAAFSLNV 2320
+ + D G Y G L+V
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 79.0 bits (195), Expect = 2e-16
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++V A N+GG AS V + PK + + G++++++I F G+P P
Sbjct: 76 VYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+TW + + + + + ++V +R D+G Y + +N G D+ + +
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Query: 364 VLE 366
V +
Sbjct: 195 VAD 197
Score = 72.4 bits (178), Expect = 4e-14
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
I +T ++V A N+ G AS + + PK + + G++++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
++I F G+P P +TW + + + + + ++V +R D+G Y + +N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 768 SGRDEGSFTIV 778
G D+ + +
Sbjct: 184 FGIDQKTVELD 194
Score = 69.4 bits (170), Expect = 4e-13
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPN-KPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
Y V A N+ G+ + + VE L G+ + GE SI +PF
Sbjct: 76 VYQ--VRATNQGGSVS---GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
P P W +ID++ ++ + +R D G Y + KN G D T
Sbjct: 131 KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190
Query: 1513 LHVRVLD 1519
+ + V D
Sbjct: 191 VELDVAD 197
Score = 67.8 bits (166), Expect = 1e-12
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYH 329
+AP K L+++ ++ + + G P P V W GKE+ D ++ + GYH
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++ + D+ Y + N G G+ ++ V
Sbjct: 63 QLIIA-SVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 61.3 bits (149), Expect = 3e-10
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GYH 744
+AP K L+++ ++ + + G P P V W GKE+ D ++ + GYH
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
++ + D+ Y + N G G+ ++
Sbjct: 63 QLIIA-SVTDDDATVYQVRATNQGGSVSGTASLE 95
Score = 51.6 bits (124), Expect = 5e-07
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFAND-SIIDDSDTRVHKQLTMNSASLVVKNSQR 1492
R++ V+ + ++ P+P W+ II D ++ L++ +
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPH--------PPENLHADEFAGDSLTL 1539
D Y+++ N G + T + V +HA G+ +++
Sbjct: 72 DDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR--GEVVSI 124
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 120 bits (304), Expect = 7e-32
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY---GPW 219
S T + P+ P +TD V L WTP D SPI+++IIE + G W
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLW 64
Query: 220 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
V T +L Y FRV+AVN G PS+AS K
Sbjct: 65 HHQTEVSGTQTTA-QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
Score = 118 bits (298), Expect = 4e-31
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 574 ETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNP- 632
T V +D P+ P + D + V L+W P +D SPIT +II+ ++ +
Sbjct: 7 GPTPAPV----YDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKP 61
Query: 633 -YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
W + EV +T +L+ Y FRV+AVN G S PS+AS+ + K
Sbjct: 62 GLWHHQTEVSGTQTTA-QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
Score = 114 bits (286), Expect = 2e-29
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRE---RGGEWLRANNYP 1278
+D P+ P E+T SV L+W P + PIT + +E + + G W
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
T +L Y FRV+A+N G PS+ ++ K + +P P
Sbjct: 72 GT-QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124
Score = 113 bits (285), Expect = 3e-29
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 1306 GPGKPSKPTD-IVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQK 1364
G S PT V P+PP ++ SV LSW P D + I +I++
Sbjct: 1 GSSGSSGPTPAPVY-----DVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEY 54
Query: 1365 RKKG---GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEE 1421
G W V NLS Y+FRV+AVN G S P + S + +
Sbjct: 55 EDAMHKPGLWHHQTEVS-GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Query: 1422 Q-PNKPVMDLSGV 1433
P+K
Sbjct: 114 SEPDKNPTSGPSS 126
Score = 107 bits (268), Expect = 5e-27
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 1565
+ + V D P+PP +L + S+ L WTP D S IT +++E +D
Sbjct: 2 SSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHK 60
Query: 1566 --VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
+W + T NL+ Y FRVMA N G S P+ + K +
Sbjct: 61 PGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK-ASEPDKN 119
Query: 1624 PGAPKGV 1630
P +
Sbjct: 120 PTSGPSS 126
Score = 100 bits (250), Expect = 1e-24
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 1037 PITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE--SATGFWSKLSS 1094
P+ D P+PP ++D +S LSW P DD SPIT +++E + G W +
Sbjct: 12 PVYDVPNPPFDLE-LTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTE 69
Query: 1095 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
+ L Y FRV A N G S P E K P +
Sbjct: 70 VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK-----ASEPDKN 119
Score = 87.8 bits (218), Expect = 3e-20
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 475 GASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGT 534
G+S P D P+PP E+++ +S +LSW P DD +PI +IIE D
Sbjct: 4 GSSGPTPAPVYDVPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHKP 61
Query: 535 WSDAGMT---VSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
T + L Y FRV AVNSIG+S E ++ + + P
Sbjct: 62 GLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT-----KASEP 116
Query: 592 EKP 594
+K
Sbjct: 117 DKN 119
Score = 87.4 bits (217), Expect = 4e-20
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK--MDMETGRWVPMGDVSGT 130
+P+PP + ++ S L W P DD + I +++E + G W +VSGT
Sbjct: 16 VPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGT 73
Query: 131 YTRA-ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRP 174
T A NL +Y+FRV AVN IG+SLP K P P
Sbjct: 74 QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
Score = 67.4 bits (165), Expect = 3e-13
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 1617 PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1676
+DVP P + D + S+ L W P D SPI ++I+E + +
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 1677 DTS 1679
T
Sbjct: 72 GTQ 74
Score = 65.9 bits (161), Expect = 1e-12
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG---GDWVDANSVP 866
P+PP ++ SV LSW P D + I +I++ G W V
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Score = 60.8 bits (148), Expect = 7e-11
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
++IE D H G VS L Y FRV A N G S P E
Sbjct: 49 KFIIEYEDAMHKPGLWHHQTEVSG-TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASE 107
Query: 961 PVVAK 965
+ K
Sbjct: 108 QYLTK 112
Score = 54.7 bits (132), Expect = 1e-08
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
G S P + VP+PP ++ D + L W P D S I + +E+
Sbjct: 4 GSSGPTPAP-------VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYE 55
Query: 1183 STRTATD 1189
Sbjct: 56 DAMHKPG 62
Score = 53.5 bits (129), Expect = 3e-08
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDN--WKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMY 474
N+ PI +++IIE + W + L+ Y FR+ N
Sbjct: 43 NNSPI-----TKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSI 97
Query: 475 GASEPLDPLFP--DKPSPPEGP 494
G S P + K S P+
Sbjct: 98 GKSLPSEASEQYLTKASEPDKN 119
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 1875 VLAYVL---DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ +++ D + T +L +Y FRV A N+ G S PS S
Sbjct: 47 ITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEAS 106
Query: 1932 K 1932
+
Sbjct: 107 E 107
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 123 bits (311), Expect = 8e-32
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 36/195 (18%)
Query: 2107 EGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYI 2165
+ ++ V + + W HN ++ S + G+ IN D+G+Y+
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 2166 IRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY---------------------- 2203
+ + ++ V L+ Q + + + A
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 2204 ------------DVIWLHNNKEIKPSNDFAYSSVAH-VHTLKIAEIFPEDSGVYTCEAFN 2250
+V WL N K + ++ A I + DSG Y N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 2251 DEGESFSSCTLLVQV 2265
G S T+ V +
Sbjct: 196 KYGSETSDFTVSVFI 210
Score = 105 bits (264), Expect = 2e-25
Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 47/201 (23%)
Query: 2024 EGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSI 2082
+ ++ V + + W HN ++ S + G+ LQI+ +
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW-------LQINEPTP 68
Query: 2083 QD--------------------------------------TSFDRRQAAPRFVIKPQSAF 2104
D + + A P
Sbjct: 69 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 128
Query: 2105 CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAGDDYTFVINRTKMEDRGE 2163
EG+++ TC V P ++W N + L Q+ +K AG F IN D G+
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188
Query: 2164 YIIRAENHYGYREEVVFLNVQ 2184
Y + +N YG ++V
Sbjct: 189 YGLVVKNKYGSETSDFTVSVF 209
Score = 78.4 bits (193), Expect = 4e-16
Identities = 18/77 (23%), Positives = 24/77 (31%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W HN I+ S+ L+I E P D G Y E F+ + + L
Sbjct: 34 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
Query: 2264 QVSWYKDGNPVSDDPAT 2280
Q A
Sbjct: 94 QAYDEAYAEFQRLKQAA 110
Score = 73.0 bits (179), Expect = 3e-14
Identities = 27/103 (26%), Positives = 40/103 (38%)
Query: 264 PVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV 323
+ A + + I+ GK LN+ G+PPPEV+W + K L
Sbjct: 108 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLK 167
Query: 324 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
G +DSG Y L ++N G + FTV+V
Sbjct: 168 FEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 69.5 bits (170), Expect = 5e-13
Identities = 21/129 (16%), Positives = 44/129 (34%)
Query: 1390 SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVP 1449
+ ++ + Q + N+ + +T++ G+ ++
Sbjct: 81 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 140
Query: 1450 FMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1509
P P W N+ + +D K +A + +D G+Y L +KN G +
Sbjct: 141 VWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 200
Query: 1510 TATLHVRVL 1518
T+ V V
Sbjct: 201 TSDFTVSVF 209
Score = 66.4 bits (162), Expect = 6e-12
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 18/140 (12%)
Query: 659 EFRVIAVNEAG---------------PSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAG 703
++ + + ++ A + + I+ G
Sbjct: 73 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
K LN+ G+PPPEV+W + K L G +DSG Y L
Sbjct: 133 KALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLV 192
Query: 764 LRNTSGRDEGSFTI---VPD 780
++N G + FT+ +P+
Sbjct: 193 VKNKYGSETSDFTVSVFIPE 212
Score = 55.3 bits (133), Expect = 3e-08
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 1999 IQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
++ + + A P EG+++ TC V P ++W N + L Q+
Sbjct: 106 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCN 165
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQDT 2085
++ + I+ S D+
Sbjct: 166 LKFEAGRTAY------FTINGVSTADS 186
Score = 49.9 bits (119), Expect = 2e-06
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+V W+ +G ++ R G + +D G Y +EL + +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87
Query: 359 SFTVTV------LETISKTNTTTISSKNMMYLFERELLNLIVPD 396
+ ++ + I+ KN + + + +
Sbjct: 88 TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Score = 45.6 bits (108), Expect = 6e-05
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
+V W+ +G ++ R G + +D G Y +EL + +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87
Query: 774 SFTIV 778
+ +
Sbjct: 88 TVDLS 92
Score = 44.5 bits (105), Expect = 1e-04
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSLN 2319
+V+W +G+ + + G+ ++I T +D G+Y + G L+
Sbjct: 34 KVNWSHNGSAIRYSDR-VKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92
Query: 2320 V 2320
Sbjct: 93 G 93
Score = 44.5 bits (105), Expect = 2e-04
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
W N S I SD RV +T L + +D G+Y ++L + T+
Sbjct: 31 EDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89
Query: 1514 HVRVLDRPHPPENL 1527
+
Sbjct: 90 DLSGQAYDEAYAEF 103
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 127 bits (322), Expect = 1e-31
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 30/209 (14%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL------IRKEI 1736
S Y+ L+ +G G F V++ R++ T I A K I + H E + +R EI
Sbjct: 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALR-EI 63
Query: 1737 DIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVC 1796
++ +L HP +I L DAF + L+F+F+ +L I ++ + + YM
Sbjct: 64 KLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTL 122
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGT 1850
+ ++++H+ I+H D+KP N++ +K+ DFGLA + P ++VV T
Sbjct: 123 QGLEYLHQHWILHRDLKPNNLLLDENG--VLKLADFGLAKSFGSPNRAYTHQVV-----T 175
Query: 1851 AEFAAPEIV--EREPVGFYT---DMWAVG 1874
+ APE++ R Y DMWAVG
Sbjct: 176 RWYRAPELLFGARM----YGVGVDMWAVG 200
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Length = 681
Score = 133 bits (335), Expect = 2e-31
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 19/201 (9%)
Query: 1688 DHYDILEEIGTGAFGVVHRCR-ERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHP 1745
Y++ I G G ++ G K + S + E + + E + ++ HP
Sbjct: 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHP 139
Query: 1746 KLINLHDAFEDDDEMV-----LIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
++ + + E D ++ E++ G L + AE I Y+ ++ A+
Sbjct: 140 SIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK---LPVAEAIAYLLEILPALS 196
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PNEVVKISTGTAEFAAPEIV 1859
++H +++ D+KPENIM T +K+ID G ++++ + GT F APEIV
Sbjct: 197 YLHSIGLVYNDLKPENIM-LTEE--QLKLIDLGAVSRINSFGYLY----GTPGFQAPEIV 249
Query: 1860 EREPVGFYTDMWAVGVLAYVL 1880
P TD++ VG L
Sbjct: 250 RTGPTV-ATDIYTVGRTLAAL 269
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell
cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 125 bits (316), Expect = 2e-31
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQL 1742
+++ +E+IG G +GVV++ R + TG + A K I + E E IR EI ++ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT--ETEGVPSTAIR-EISLLKEL 59
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+HP ++ L D ++++ L+FEFL + + + + +Y+ Q+ + +
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDAS--ALTGIPLPLIKSYLFQLLQGLA 117
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTAEFA 1854
H ++H D+KP+N++ T +K+ DFGLA P +EVV T +
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEG--AIKLADFGLARAFGVPVRTYTHEVV-----TLWYR 170
Query: 1855 APEIV--EREPVGFYT---DMWAVG 1874
APEI+ + Y+ D+W++G
Sbjct: 171 APEILLGAKY----YSTAVDIWSLG 191
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 124 bits (315), Expect = 3e-31
Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 31/203 (15%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQL 1742
Y+ LE+IG G +G V + + R+T I A K + + + E +R EI ++ +L
Sbjct: 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALR-EICLLKEL 58
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
H ++ LHD D ++ L+FEF +L + + + + V +++ Q+ + +
Sbjct: 59 KHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFC 117
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTAEFAAP 1856
H +N++H D+KP+N++ +K+ +FGLA P EVV T + P
Sbjct: 118 HSRNVLHRDLKPQNLLINRNG--ELKLANFGLARAFGIPVRCYSAEVV-----TLWYRPP 170
Query: 1857 EIV--EREPVGFYT---DMWAVG 1874
+++ + Y+ DMW+ G
Sbjct: 171 DVLFGAKL----YSTSIDMWSAG 189
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 126 bits (317), Expect = 3e-31
Identities = 54/327 (16%), Positives = 94/327 (28%), Gaps = 67/327 (20%)
Query: 2006 RRQAAPRFVI-KPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMK---- 2059
R P + + G +V+ +C W + L S + +
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR 62
Query: 2060 ------------RY---AGDDYTFYSSLRKLQIDRFSIQDTSFDRR--------QAAPRF 2096
Y D S D AP +
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYW 122
Query: 2097 V----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVK-FMKRYAGDDYTF 2151
+ + +V+F C TP+++W N +E + + + ++
Sbjct: 123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY-------- 2203
V+ DRG Y EN +G + L+V + I + AN+
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI-LQAGLPANQTAVLGSDVE 241
Query: 2204 -----------DVIWLH----NNKEIKPSNDF---------AYSSVAHVHTLKIAEIFPE 2239
+ WL N ++ P A ++ + L + + E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 2240 DSGVYTCEAFNDEGESFSSCTLLVQVS 2266
D+G YTC A N G S S L+V +
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 101 bits (252), Expect = 8e-23
Identities = 42/328 (12%), Positives = 71/328 (21%), Gaps = 99/328 (30%)
Query: 2089 RRQAAPRFVI-KPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAG 2146
R P + + G +V+ +C W + L S +R
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS----ERVLV 58
Query: 2147 DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY--- 2203
+ ED G Y R ++
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 2204 -----------------------------------DVIWLHNNKEIKPSN-DFAYSSVAH 2227
+ WL N +E + +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 2228 VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ----------------------- 2264
+L + + P D G YTC N G + TL V
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 2265 ---------------VSWYKDGNP------------VSDDPATYQFTQIGQTYKMKILST 2297
+ W K V+ T + + + +
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 2298 TLDDVGQY--SA--QMGGIIAAFSLNVV 2321
T +D G+Y A +G + L V+
Sbjct: 299 TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 85.8 bits (212), Expect = 1e-17
Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 45/229 (19%)
Query: 1995 DRFSIQDTSFDRRQAAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQE 2050
+ + AP + + + +V+F C TP+++W N +E
Sbjct: 104 EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163
Query: 2051 LKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQDT---------SFDRRQA--------- 2092
+ + L ++ D F +
Sbjct: 164 FRGEHRIGGIK------LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217
Query: 2093 ----APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVK--------- 2139
P + G V+F C+V + A P + W + + V
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277
Query: 2140 ----FMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ ++ ED GEY A N G+ +L V
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 61.2 bits (148), Expect = 1e-09
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 257 EPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT 316
+ ++ + T P + P+ K + + A + G P P ++W +G+E +
Sbjct: 108 DEAEDTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG 166
Query: 317 DS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + ++V + SD G Y + N G ++T+ VLE
Sbjct: 167 EHRIGGIKLRHQQWSLV-MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216
Score = 60.8 bits (147), Expect = 2e-09
Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 1395 YTFRVIAVNEAGNSEPGKQ--SGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
++ RV +G+ E G+ + P + + + V A P
Sbjct: 90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG 149
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
P P+ W N +L SLV+++ SD G Y ++N G T
Sbjct: 150 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT 209
Query: 1513 LHVRVLDRPHP--------PENLHADEFAGDSLTL 1539
+ VL+R P N A G +
Sbjct: 210 YTLDVLERSPHRPILQAGLPANQTAVL--GSDVEF 242
Score = 56.9 bits (137), Expect = 3e-08
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQ-PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1458
+ N+ G+ Q+ + V E+ P++P++ + T G D H + QP
Sbjct: 198 VVENKFGSIR---QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI 254
Query: 1459 FWF----ANDSIIDDSDTRVHKQL--------TMNSASLVVKNSQRSDGGQYRLQLKNPA 1506
W N S + T L L + N D G+Y N
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 1507 GFDTATLHVRVLDRP 1521
GF + + VL
Sbjct: 315 GFSHHSAWLVVLPAE 329
Score = 50.0 bits (119), Expect = 5e-06
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ NK G + V + + G + + + P + W
Sbjct: 198 VVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
K ++ + + Y T++ T +D L L N + D G +T
Sbjct: 257 L---KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Score = 50.0 bits (119), Expect = 5e-06
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 671 SEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK 730
+ ++ + + + P+ K + + A + G P P ++W +G+E +
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 165
Query: 731 TDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + ++V + SD G Y + N G ++T+
Sbjct: 166 GEHRIGGIKLRHQQWSLV-MESVVPSDRGNYTCVVENKFGSIRQTYTL 212
Score = 49.2 bits (117), Expect = 1e-05
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+ + + + N+ G + ++ + + G +
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
+ + P + W K ++ + + Y T++ T +D L L N
Sbjct: 242 FHCKVYSDAQPHIQWL---KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 768 SGRDEGSFTIV 778
+ D G +T +
Sbjct: 299 TFEDAGEYTCL 309
Score = 46.5 bits (110), Expect = 6e-05
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRV 1474
P Q + +G+ + P P W + + + S+ RV
Sbjct: 8 PGPEPGQQ----------EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RV 56
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAG 1534
+ L V N+ D G Y + + VRV D P ++ ++ A
Sbjct: 57 L----VGPQRLQVLNASHEDSGAYSCRQRLTQR-VLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 1535 DSLTL----YWTPPRDNGGSEIT 1553
D+ YWT P +
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLA 134
Score = 42.3 bits (99), Expect = 0.002
Identities = 27/152 (17%), Positives = 42/152 (27%), Gaps = 24/152 (15%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
+ ++ +G VE+ G P W DG L R +G
Sbjct: 9 GPEPGQQEQLVFGSGD--AVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVL---VGPQR 62
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELL 390
+ +N DSG Y R + R F+V V + S + + +
Sbjct: 63 LQ-VLNASHEDSGAYSCRQRL-TQRVLCHFSVRVTDAPSSGDDEDGEDE------AEDTG 114
Query: 391 NLIVPDHLKNLWNMKKSLHPV-------LHCR 415
+ M K L V C
Sbjct: 115 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCP 146
Score = 41.5 bits (97), Expect = 0.003
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
+ ++ +G VE+ G P W DG L R +G
Sbjct: 9 GPEPGQQEQLVFGSGD--AVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVL---VGPQR 62
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPD 780
+ +N DSG Y R T V D
Sbjct: 63 LQ-VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 125 bits (317), Expect = 3e-31
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 34/204 (16%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE------LIRKEIDIMNQ 1741
+ Y L+++G G + V++ + + T N+ A K I LE E IR E+ ++
Sbjct: 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEI----RLEHEEGAPCTAIR-EVSLLKD 56
Query: 1742 LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
L H ++ LHD + + L+FE+L +L + + ++ V ++ Q+ + +
Sbjct: 57 LKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAY 115
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTAEFAA 1855
H + ++H D+KP+N++ +K+ DFGLA K P NEVV T +
Sbjct: 116 CHRQKVLHRDLKPQNLLI--NERGELKLADFGLARAKSIPTKTYDNEVV-----TLWYRP 168
Query: 1856 PEIV--EREPVGFYT---DMWAVG 1874
P+I+ + Y+ DMW VG
Sbjct: 169 PDILLGSTD----YSTQIDMWGVG 188
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 132 bits (332), Expect = 3e-31
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEID-------I 1738
++ L +G G+FG V + T ++A K L+K+++ +++ +
Sbjct: 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKI------LKKDVVIQDDDVECTMVEKRV 394
Query: 1739 MNQ-LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
+ P L LH F+ D + + E+++GG+L I + E + Y ++
Sbjct: 395 LALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAI 453
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAA 1855
+ + K II+ D+K +N+M + ++K+ DFG+ K + + V T GT ++ A
Sbjct: 454 GLFFLQSKGIIYRDLKLDNVMLDSEG--HIKIADFGMC-KENIWDGVTTKTFCGTPDYIA 510
Query: 1856 PEIVEREPVGFYTDMWAVGVLAY 1878
PEI+ +P G D WA GVL Y
Sbjct: 511 PEIIAYQPYGKSVDWWAFGVLLY 533
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 118
Score = 117 bits (296), Expect = 6e-31
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G S +PD P P++ TK+S+TL W+ P D G++I+ ++++
Sbjct: 1 GSSGSSGAEIFTTLSC---EPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWD 56
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ G+ + LS FR+ A N+ G S ++
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 114 bits (287), Expect = 9e-30
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTN 1281
PD P+ P + + +S++L W P+++G I + +E E G Y +
Sbjct: 14 LSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGS-KIQNFVLEWDEGKGNGEFCQCYMGSQ 72
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
F + L +FR+ A N+ G S+ P +
Sbjct: 73 KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY-----TSGCSGPSS 117
Score = 114 bits (286), Expect = 1e-29
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 222
PD P P + + K+ + L+W P D GS I +++E G E
Sbjct: 7 GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFC 65
Query: 223 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+ + L +FR+ A N G S+ T
Sbjct: 66 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Score = 109 bits (275), Expect = 4e-28
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKK 627
G S + T EPD P P + + ++ + L WK P +D GS I +++++
Sbjct: 1 GSSGSSGAEIFTTLS---CEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWD 56
Query: 628 EKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
E G ++ KI L+ +FR+ A N+ G S S+
Sbjct: 57 E-GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108
Score = 105 bits (265), Expect = 8e-27
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 1565
+G A + + P P +SLTL W P DNG S+I N+V+E +
Sbjct: 3 SGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNG-SKIQNFVLEWDEGKGN 61
Query: 1566 VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+ ++ L+ +FR+ A N YG S + + + P
Sbjct: 62 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG-----CSGPS 116
Query: 1626 A 1626
+
Sbjct: 117 S 117
Score = 104 bits (260), Expect = 4e-26
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
++ +P P P +++ T S +L WK P D GS I N+V+E E
Sbjct: 14 LSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGS 71
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + L +FR+ A N YG S E T+ P
Sbjct: 72 QKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG-----CSGPS 116
Score = 89.0 bits (221), Expect = 9e-21
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSGTYT 132
P P P + +N TK+S L+W+AP D G+ I ++V+E G + S
Sbjct: 18 PDIPNPP-RIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQF 75
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
+ L FR+ A N G S T+
Sbjct: 76 KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113
Score = 85.9 bits (213), Expect = 9e-20
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 475 GASEPLDPLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE-KMD 529
G+S +P P P ++N TK S L W+ P D G+ I ++++E
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEG 58
Query: 530 ISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
G + M + + +L FR+ A N G S E +
Sbjct: 59 KGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 72.4 bits (178), Expect = 5e-15
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
+PD P P++ TK+S+TL W+ P D G++I+ ++++ + G+
Sbjct: 17 EPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQF 75
Query: 873 TL 874
+
Sbjct: 76 KI 77
Score = 60.9 bits (148), Expect = 6e-11
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
P P P+ + T++S++L W P D GS IQ +++E
Sbjct: 7 GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWD-EGKGNGEF 64
Query: 1670 ASMAHIPDTS 1679
Sbjct: 65 CQCYMGSQKQ 74
Score = 58.6 bits (142), Expect = 4e-10
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGA 476
N I +++E E + ++ F + L+ FR+ N YG
Sbjct: 44 NGSKI-----QNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGT 98
Query: 477 SEPLDPLFP--DKPSPP 491
S + + S P
Sbjct: 99 SGFSEEVLYYTSGCSGP 115
Score = 57.8 bits (140), Expect = 7e-10
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----- 955
+V+E + G + + +L +FR+ A N G S
Sbjct: 50 NFVLEWDEGKGNGEFCQCYMGS---QKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVL 106
Query: 956 -ITTKEP 961
T+
Sbjct: 107 YYTSGCS 113
Score = 54.3 bits (131), Expect = 1e-08
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 1875 VLAYVLDVAEDT-NWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+ +VL+ E N Y+ + + L +FR+ A+N G S S
Sbjct: 48 IQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVL 106
Score = 54.3 bits (131), Expect = 1e-08
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
G S + T PD P P+I + N+ TL W P +D GSKIQ + +E+
Sbjct: 1 GSSGSSGAEIFTT---LSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWD 56
Query: 1183 STR 1185
+
Sbjct: 57 EGK 59
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 125 bits (315), Expect = 8e-31
Identities = 64/204 (31%), Positives = 113/204 (55%), Gaps = 17/204 (8%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIP----VSHNLEKELIRKEIDIMN 1740
+++++L+ +GTGA+G V R+ TG ++A K + V E R E ++
Sbjct: 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 113
Query: 1741 QL-HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
+ P L+ LH AF+ + ++ LI ++++GGELF ++ + +E EV Y+ ++ A+
Sbjct: 114 HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIVLAL 172
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKIST--GTAEFAAP 1856
+H+H+ II+ D+K ENI+ +S +V + DFGL+ + +E + GT E+ AP
Sbjct: 173 EHLHKLGIIYRDIKLENILL---DSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAP 229
Query: 1857 EIVEREPVGFYT--DMWAVGVLAY 1878
+IV G D W++GVL Y
Sbjct: 230 DIVRGGDSGHDKAVDWWSLGVLMY 253
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 123 bits (312), Expect = 1e-30
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 37/208 (17%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQL 1742
D Y + ++G G +G V++ + T A K I + H E+E IR E+ ++ +L
Sbjct: 34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH--EEEGVPGTAIR-EVSLLKEL 90
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
H +I L + + LIFE+ + ++ +S + +++ Q+ V
Sbjct: 91 QHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNP----DVSMRVIKSFLYQLINGVN 146
Query: 1801 HMHEKNIIHLDVKPENI---MCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTA 1851
H + +H D+KP+N+ + + +K+ DFGLA P +E++ T
Sbjct: 147 FCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEII-----TL 201
Query: 1852 EFAAPEIV--EREPVGFYT---DMWAVG 1874
+ PEI+ R Y+ D+W++
Sbjct: 202 WYRPPEILLGSRH----YSTSVDIWSIA 225
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin
type III, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 117
Score = 116 bits (293), Expect = 1e-30
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE-SATGFWSKLSSFV 1096
++D P PP P V+D+T S +LSW+P G P + Y++E + S + W +++ V
Sbjct: 12 LSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
++ Y V GL N Y F VRA N G+S+P + + + + G
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS---GPSSG 117
Score = 114 bits (288), Expect = 6e-30
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPV 1383
P PP P+V +TK+SVTLSW+P G YI++ + + V +
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+TV L Y F V A+N G S+P S PV ++
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
Score = 114 bits (288), Expect = 8e-30
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPT 1279
D P PS+P+VT + +SV+L+W P G P + Y +E + +
Sbjct: 11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPGTP-GTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
+TV LR Y F V AIN G PS +D V+ ++ P
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD--SGPSS 116
Score = 111 bits (280), Expect = 9e-29
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 220
S D P P +P VTD K+ V L W P G P S YIIE + W+
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQ 63
Query: 221 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
T V L+ Y F V A+N G +PS S PV +
Sbjct: 64 TVANHVKTTLYT-VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 110 bits (277), Expect = 2e-28
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 1509 DTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV-W 1567
++ + + D P PP + +S+TL W P G + Y++E + + W
Sbjct: 4 GSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTP-GTLPASAYIIEAFSQSVSNSW 62
Query: 1568 TKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG 1622
V+++V T VR L + Y F V A N GLS P+ DP++ + G
Sbjct: 63 QTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 110 bits (277), Expect = 2e-28
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKK 627
G S + + + D P P KP V D ++ V L+W+P G P + YII+
Sbjct: 1 GSSGS-----SGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAF 54
Query: 628 EKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
+ + T + L Y F V A+N G S+PS SD + +
Sbjct: 55 SQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 91.3 bits (227), Expect = 1e-21
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-ETGRWVPMGD-VSGT 130
+P PP P + +++TK+S L W+ P G Y++E + W + + V T
Sbjct: 15 LPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT 72
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
L Y F V+A+N G S P P+ +D
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 89.4 bits (222), Expect = 5e-21
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 476 ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI-SRGT 534
+ + D D P PP P +V++VTK S LSW+ P G P YIIE +
Sbjct: 6 SGKNYDLS--DLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNS 61
Query: 535 WSDAGMTV-SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEP 588
W V + Y V L YLF V+A+N G SD + ++
Sbjct: 62 WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 69.3 bits (170), Expect = 7e-14
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y+IE + W NHV TV L T Y F VRA N QGLS+P +
Sbjct: 48 AYIIEAFSQSVSNSWQTVANHVK--TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSD 105
Query: 961 PVVAK 965
PV +
Sbjct: 106 PVRTQ 110
Score = 67.8 bits (166), Expect = 2e-13
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPV 871
P PP P+V +TK+SVTLSW+P G YI++ + + V +
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Query: 872 HTLLS 876
+T+
Sbjct: 74 YTVRG 78
Score = 65.5 bits (160), Expect = 1e-12
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1617 PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1676
D+PG P P+ D T++S++L W +P G P YI+E S + H+
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70
Query: 1677 DTSL 1680
T
Sbjct: 71 TTLY 74
Score = 60.8 bits (148), Expect = 5e-11
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 427 SRYIIEMAEYGLDN-WKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL---DP 482
S YIIE + N W+TV +TV+GL Y+F +R N G S+P DP
Sbjct: 47 SAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDP 106
Query: 483 LFPDKPSPPEG 493
+ P G
Sbjct: 107 VRTQDSGPSSG 117
Score = 54.7 bits (132), Expect = 9e-09
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+P PP +PQ+ D N+ TL W +P T G Y +E S +
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNS 61
Score = 53.9 bits (130), Expect = 1e-08
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1875 VLAYVL---DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
AY++ + +W+ ++ VK Y V L Y F V+A N G S PS S
Sbjct: 46 ASAYIIEAFSQSVSNSWQTVANH-VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMS 104
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent
kinase, signaling protein,transfera cycle complex; HET:
MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 123 bits (310), Expect = 2e-30
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 37/208 (17%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE------LIRKEIDIMNQ 1741
+ LE++G G + V++ + TG A K + L+ E IR EI +M +
Sbjct: 5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEV----KLDSEEGTPSTAIR-EISLMKE 59
Query: 1742 LHHPKLINLHDAFEDDDEMVLIFEFLSG--GELFERITAPDYK--MSEAEVINYMRQVCE 1797
L H ++ L+D ++++ L+FEF+ + + T + + V + Q+ +
Sbjct: 60 LKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQ 119
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTA 1851
+ HE I+H D+KP+N++ R +K+ DFGLA P +EVV T
Sbjct: 120 GLAFCHENKILHRDLKPQNLLINKRG--QLKLGDFGLARAFGIPVNTFSSEVV-----TL 172
Query: 1852 EFAAPEIV--EREPVGFYT---DMWAVG 1874
+ AP+++ R Y+ D+W+ G
Sbjct: 173 WYRAPDVLMGSRT----YSTSIDIWSCG 196
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 121 bits (306), Expect = 3e-30
Identities = 53/295 (17%), Positives = 83/295 (28%), Gaps = 47/295 (15%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIAT-PTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+ I P G+S F C+V A ++WF N E + +R +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ--QRISVVWNDDD 60
Query: 2070 SSLRKLQIDRFSIQD---------TSFDRRQ---------AAPRFVIKPQSAFCYEGQSV 2111
SS L I +I D + F P EG+
Sbjct: 61 SS--TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 2112 KFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENH 2171
C V++ PT+ W H +++ K ++ + I K D G Y
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILK-KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 2172 YGYREEVVFLNVQRKYDLPVIHYKNHRRANKY-------------------DVIWLHNNK 2212
+ V P + + N + W + +
Sbjct: 178 ARGEINFKDIQVIVNVP-PTVQARQ-SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Query: 2213 EIKPSN--DFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
I+ D + L I + D Y C A N GE +S L V
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 114 bits (286), Expect = 1e-27
Identities = 50/290 (17%), Positives = 87/290 (30%), Gaps = 67/290 (23%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIAT-PTLTWFHNNQEL---KQSVKFMKRYAGDDY 2149
+ I P G+S F C+V A ++WF N E Q + D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEV-VFLNVQRKYDLPVIHYKNHR---------- 2198
T I ++D G Y G + E V + + +K +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK---LMFKNAPTPQEFKEGEDAV 119
Query: 2199 ---RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
+IW H +++ D + +++ + L+I I D G Y CE
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILA 178
Query: 2253 GESFSSCTLLVQV-------------------------------------SWYKDGNPV- 2274
+ + V V SW KDG P+
Sbjct: 179 RGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE 238
Query: 2275 SDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLNV 2320
+++ + + ++ I + +D +Y G A+ L V
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 98.8 bits (246), Expect = 3e-22
Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 31/202 (15%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
F P EG+ C V++ PT+ W H +++ ++Y
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY- 156
Query: 2068 FYSSLRKLQIDRFSIQDT-------------SFDRR------QAAPRFVIKPQ--SAFCY 2106
LQI D + + P + +A
Sbjct: 157 -------LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY--AGDDYTFVINRTKMEDRGEY 2164
GQSV C PT++W + + ++ + +++ + D I D EY
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Query: 2165 IIRAENHYGYREEVVFLNVQRK 2186
+ AEN G ++ + L V K
Sbjct: 270 VCIAENKAGEQDASIHLKVFAK 291
Score = 63.4 bits (154), Expect = 2e-10
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
A E + VIV P V + + T G+ ++ FP+P
Sbjct: 173 EGRILAR-GEINFKDIQVIVNVPP--TVQARQSIVNATANLGQSVTLVCDADGFPEPTMS 229
Query: 1460 WFANDSIIDDSDTRVHKQ-LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
W + I++ + K + +S+ L ++N ++D +Y +N AG A++H++V
Sbjct: 230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Query: 1519 DR 1520
+
Sbjct: 290 AK 291
Score = 55.7 bits (134), Expect = 6e-08
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 15/144 (10%)
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFAN 1463
+ + V V+ +M + K GED I ++ P W
Sbjct: 80 VVTAEDGTQSEATVNVKIFQ--KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK 137
Query: 1464 DS-IIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--FDTATLHVRVLDR 1520
+I D R +++ L ++ +++D G YR + + A + + V V
Sbjct: 138 GRDVILKKDVRFI---VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVP 194
Query: 1521 P-----HPPENLHADEFAGDSLTL 1539
P N A+ G S+TL
Sbjct: 195 PTVQARQSIVNATANL--GQSVTL 216
Score = 54.9 bits (132), Expect = 1e-07
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 248 IAVNKGGPGEPSK-ASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT 306
K V P A + + + G+ + + G P P ++
Sbjct: 173 EGRILARGEINFKDIQVIVNVPPTVQARQ---SIVNATANLGQSVTLVCDADGFPEPTMS 229
Query: 307 WTIDGKEL-KTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
WT DG+ + + + + N ++D Y N +G + S + V
Sbjct: 230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Query: 366 E 366
Sbjct: 290 A 290
Score = 53.3 bits (128), Expect = 3e-07
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 7/112 (6%)
Query: 254 GPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKE 313
G S+A+ V + K K G+ + + PP + W G++
Sbjct: 84 EDGTQSEATVNVKIFQK---LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 314 LK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ VR V S Y I K++D GTY E R + + + V
Sbjct: 141 VILKKDVRFIVLSNNYLQI---RGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 49.9 bits (119), Expect = 4e-06
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 9/113 (7%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAF-WF-ANDSIIDDSDTRVH-KQLTMNSASLVVKNS 1490
+ GE + WF N + + R+ +S++L + N+
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 1491 QRSDGGQYRLQLKNPAGFD-TATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
D G Y+ + G AT++V++ + P E G+ +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE--GEDAVI 120
Score = 48.3 bits (115), Expect = 1e-05
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHTI 746
K K G+ + + PP + W G+++ VR V S Y I
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
K++D GTY E R + + I
Sbjct: 160 ---RGIKKTDEGTYRCEGRILARGEINFKDI 187
Score = 48.3 bits (115), Expect = 2e-05
Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 7/133 (5%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTP--LKDIIIKAGKI 705
+I + K E +R A +I+ + P ++ + + G+
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV----NVPPTVQARQSIVNATANLGQS 213
Query: 706 LNVEIQFIGEPPPEVTWTIDGKEL-KTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLEL 764
+ + G P P ++WT DG+ + + + + N ++D Y
Sbjct: 214 VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 273
Query: 765 RNTSGRDEGSFTI 777
N +G + S +
Sbjct: 274 ENKAGEQDASIHL 286
Score = 43.7 bits (103), Expect = 4e-04
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWT-IDGKELKTDSVRTTVTSIGYHTI 331
++ I G+ Q G+ +++W +G++L + R +V +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 332 VNTV-NTKRSDSGTYHLELRNTSG-RDEGSFTVTVLETISKTNTTT 375
T+ N D+G Y + G + E + V + + + N T
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT 108
Score = 38.3 bits (89), Expect = 0.024
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWT-IDGKELKTDSVRTTVTSIGYHTI 746
++ I G+ Q G+ +++W +G++L + R +V +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 747 VNTV-NTKRSDSGTYHLELRNTSGRDE 772
T+ N D+G Y + G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQS 89
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 122 bits (309), Expect = 3e-30
Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 32/223 (14%)
Query: 1668 IKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL 1727
+ H Y + + Y LE++G G +GVV++ ++ G I A K I +
Sbjct: 1 MHHHHHHSSGRENLYFQGLMEKYQKLEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDA-- 57
Query: 1728 EKE-----LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK 1782
E E IR EI ++ +LHHP +++L D + + L+FEF+ +L + +
Sbjct: 58 EDEGIPSTAIR-EISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTG 115
Query: 1783 MSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP- 1840
+ ++++ Y+ Q+ V H H+ I+H D+KP+N++ + +K+ DFGLA P
Sbjct: 116 LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDG--ALKLADFGLARAFGIPV 173
Query: 1841 ----NEVVKISTGTAEFAAPEIV--EREPVGFYT---DMWAVG 1874
+EVV T + AP+++ ++ Y+ D+W++G
Sbjct: 174 RSYTHEVV-----TLWYRAPDVLMGSKK----YSTSVDIWSIG 207
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte
antigen related, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 106
Score = 115 bits (290), Expect = 3e-30
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 1220 QSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPT 1279
S P P VT + +SV+L W+ P+T Y ++ R G E
Sbjct: 2 SSGSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGV 58
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+++ L +Y FRV+A+N G G PS+ + P +
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRAR-----TGEQSGPSS 105
Score = 108 bits (272), Expect = 7e-28
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 231
P P VT+ V L W P++ Y I+ + + T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
S+ L EY FRV+AVN G G PS+A T +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
Score = 107 bits (270), Expect = 2e-27
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P PP V T SVTL+W + Y +Q R G + V ++
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYS 64
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+G LS EY FRV+AVN G P + E+
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
Score = 107 bits (268), Expect = 2e-27
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P P V + V L W P+T Y IQ + G ++ A T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVAT-T 61
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQ 684
I L+ EY FRV+AVN G PS+A +Q
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
Score = 98.9 bits (247), Expect = 2e-24
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
+ P PP + V++ T S +L+W P+T Y ++ + T + V +
Sbjct: 5 SSGPKPPIDLV-VTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVAT 60
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQ 1148
Y + GL +Y FRV A N G P E + T + P
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE-----QSGPSS 105
Score = 97.8 bits (244), Expect = 5e-24
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P PP +L E S+TL W +T Y ++ + + + V T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 1615
+ L+ S Y FRV+A N G P+ + +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
Score = 80.8 bits (200), Expect = 4e-18
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI-SRGTWSDAGMTVS 543
P PP V+ T S L+W P+ +Y I+ + G + + +
Sbjct: 5 SSGPKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVAT 60
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPE 592
Y + L EY FRV AVNSIG E + E P
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG-----EQSGPS 104
Score = 80.8 bits (200), Expect = 4e-18
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDVSGTYT 132
P PP + T +S L W + + +Y ++ T G + + V+ T
Sbjct: 8 PKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRY 63
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
L +Y FRV AVN IG P T +
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
Score = 69.3 bits (170), Expect = 4e-14
Identities = 30/155 (19%), Positives = 39/155 (25%), Gaps = 66/155 (42%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P PP V T SVTL+ W NS PV
Sbjct: 8 PKPPIDLVVTETTATSVTLT-------------------------WDSGNSEPV------ 36
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y I+ R G V+ V+ ++
Sbjct: 37 --------------------------TYYGIQYRA-AGTEGPFQEVDGVA--TTRYSIGG 67
Query: 934 LLEGTTYEFRVRAENLQGLSEP------ITTKEPV 962
L + Y FRV A N G P T ++
Sbjct: 68 LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
Score = 61.2 bits (149), Expect = 3e-11
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 416 GNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYG 475
GN P+ Y I+ G + +++ GL+ +Y FR+ N G
Sbjct: 31 GNSEPVTY-----YGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIG 85
Query: 476 ASEPLDPLFP--DKPSPPE 492
P + + + S P
Sbjct: 86 RGPPSEAVRARTGEQSGPS 104
Score = 60.0 bits (146), Expect = 9e-11
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
P P ++T S++L W P+ Y ++ R + + + + T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQE-VDGVATT 61
Query: 1679 S 1679
Sbjct: 62 R 62
Score = 50.8 bits (122), Expect = 1e-07
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 1875 VLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
V Y + T V Y + L +Y FRV A N+ G PS +
Sbjct: 36 VTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVR 94
Score = 50.4 bits (121), Expect = 2e-07
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ P PP + + + TL WD + Y +++R+ T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGT 48
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 121 bits (307), Expect = 3e-30
Identities = 52/194 (26%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 1746
Y I++++G G V+ + A K I + ++E +++ E+ +QL H
Sbjct: 13 YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN 72
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++++ D E+DD L+ E++ G L E I + +S IN+ Q+ + +KH H+
Sbjct: 73 IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIES-HGPLSVDTAINFTNQILDGIKHAHDMR 131
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIVEREPV 1864
I+H D+KP+NI+ + +K+ DFG+A L + + + GT ++ +PE + E
Sbjct: 132 IVHRDIKPQNILIDSNK--TLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEAT 189
Query: 1865 GFYTDMWAVGVLAY 1878
TD++++G++ Y
Sbjct: 190 DECTDIYSIGIVLY 203
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo
sapiens} PDB: 3enm_A
Length = 290
Score = 121 bits (305), Expect = 4e-30
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 11/197 (5%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDI-MNQLHHP 1745
D + + E+G GA+GVV + R +G I A K I + N ++ + + ++DI M + P
Sbjct: 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGG--ELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
+ + A + ++ + E + + ++++ + E + + +A++H+H
Sbjct: 67 FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH 126
Query: 1804 EK-NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPE-IVER 1861
K ++IH DVKP N++ VKM DFG++ L + I G + APE I
Sbjct: 127 SKLSVIHRDVKPSNVLINALG--QVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPE 184
Query: 1862 EPVGFYT---DMWAVGV 1875
Y+ D+W++G+
Sbjct: 185 LNQKGYSVKSDIWSLGI 201
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 115 bits (289), Expect = 5e-30
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRAN---N 1276
S P +PS +V YS S+ + ++ P GG PI Y E R G E W
Sbjct: 3 SGSSGPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDR 1336
+ T+ L+ Y R+ A+N G G+ S ++ P APK++
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV-----REPSAPKLEG 116
Query: 1337 ITKDS 1341
S
Sbjct: 117 SGPSS 121
Score = 103 bits (258), Expect = 8e-26
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 581 ARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA--- 637
+ P +P V + + + P GG PI Y + + G W +
Sbjct: 1 GSSGSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 638 LEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ + + V I L Y R+ A+N G E S AS+
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 102
Score = 99.8 bits (249), Expect = 1e-24
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP-- 1099
PS P + + + + P GG PI Y E W +
Sbjct: 8 PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 1100 --AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ GL+ Y R+ A N G+ E T P P P
Sbjct: 66 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ--PVREPSAP 112
Score = 99.8 bits (249), Expect = 1e-24
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDW---VDANSVPVPN 1381
P P +V+ + + + P+ GG I Y + R G W
Sbjct: 8 PSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 66
Query: 1382 PVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ-PNKPVMDLSG 1432
+ T+ L Y R+ A+N G E S + P+ P ++ SG
Sbjct: 67 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSG 118
Score = 96.8 bits (241), Expect = 2e-23
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 170 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 229
P P V + +++ P+ GG PI +Y E + + A
Sbjct: 4 GSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 230 TATS----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ + LK Y R+ A+N G GE S AS T
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 94.5 bits (235), Expect = 1e-22
Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK----VSSYVTT 1576
P P E + + + P GG I Y E + VW
Sbjct: 8 PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 66
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAP 1624
V + L +TY R+ A N GL + + + P P AP
Sbjct: 67 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ--PVREPSAP 112
Score = 86.0 bits (213), Expect = 1e-19
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 476 ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW 535
S PS P + ++ + P GG PIL Y E + W
Sbjct: 1 GSSGSSG-----PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVW 53
Query: 536 SDAGMTV-----SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDA 590
+ L Y R+ A+N G + + EP A
Sbjct: 54 HSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA--SEFKTQPVREPSA 111
Query: 591 P 591
P
Sbjct: 112 P 112
Score = 82.5 bits (204), Expect = 2e-18
Identities = 22/109 (20%), Positives = 29/109 (26%), Gaps = 8/109 (7%)
Query: 75 SPPEGPLKPS-NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-----VPMGDVS 128
S P P S+ +++ P GG IL Y E + W
Sbjct: 6 SGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 177
L Y R+ A+N G T P P P
Sbjct: 66 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAP 112
Score = 70.6 bits (173), Expect = 2e-14
Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 56/143 (39%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
P P +V+ + + + P+ GG I Y + R G W +
Sbjct: 8 PSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 66
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
+++I L
Sbjct: 67 GIVTI-----------------------------VGLKPE-------------------- 77
Query: 933 RLLEGTTYEFRVRAENLQGLSEP 955
TTY R+ A N +GL E
Sbjct: 78 -----TTYAVRLAALNGKGLGEI 95
Score = 69.0 bits (169), Expect = 1e-13
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 1617 PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASM-AHI 1675
P +P + V+ + + + +P GG PI +Y E R + ++ W A
Sbjct: 4 GSSGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 1676 PDTSLKYT 1683
T
Sbjct: 63 ASMEGIVT 70
Score = 55.2 bits (133), Expect = 7e-09
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ P P Q V+ ++ A + +D P GG I YK E+R+
Sbjct: 4 GSSGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 52
Score = 50.9 bits (122), Expect = 2e-07
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 429 YIIEMAEYGLDNWKT----VPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF 484
Y E G + W + + T+ GL Y R+ N G E
Sbjct: 41 YKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 100
Query: 485 P-----DKPSPP 491
+PS P
Sbjct: 101 FKTQPVREPSAP 112
Score = 45.1 bits (107), Expect = 2e-05
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1875 VLAYVLDVAED--TNWRVANDYL---VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+L Y + W + + L Y R+ A N G + S+
Sbjct: 38 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 97
Query: 1930 TSK 1932
S+
Sbjct: 98 ASE 100
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 123 bits (310), Expect = 7e-30
Identities = 58/405 (14%), Positives = 95/405 (23%), Gaps = 106/405 (26%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDY 2066
P +P E C + +W + + +
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ--------EHNA 55
Query: 2067 TFYSSLRKLQIDRFSIQD------------------TSFDRRQAAPRFVIKPQSAFCYEG 2108
L R D R+ K EG
Sbjct: 56 ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEG 115
Query: 2109 QSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFM---KRYA----GDDYTFVINRTKMED 2160
+ + C + P +TW + +R G+ Y ++ + + D
Sbjct: 116 RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 2161 RGEYIIRAENHYGYRE--------EVVFLNVQRKYDLPVIHYKNHRRANKY--------- 2203
+Y+ A+N E + V + PV Y + K
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
Query: 2204 -------DVIWLHNNKEI--KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
+ N K++ P + + L PED GVYTCE N G+
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 2255 SFS-SCTLLVQ----------------------------------VSWYKDGNPVSDDPA 2279
S L V V W + P+S
Sbjct: 296 PQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-- 353
Query: 2280 TYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
+ T + I D G Y + + G + V
Sbjct: 354 --RATVTDSG--LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 118 bits (296), Expect = 5e-28
Identities = 42/307 (13%), Positives = 73/307 (23%), Gaps = 57/307 (18%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFM---KRY 2061
R+ K EG+ + C + P +TW + +R
Sbjct: 96 RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155
Query: 2062 -----------------AGD--DYT------FYSSLRKLQIDRFSIQDTSFDRRQAAPRF 2096
D Y L + P
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215
Query: 2097 VIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL--KQSVKFMKRYAGDDYTFVIN 2154
+ G C + +F N +++ + + +
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK 275
Query: 2155 RTKMEDRGEYIIRAENHYGYREE-VVFLNVQRKYDLPVI--HYKNHRRANKYD------- 2204
T ED G Y +N G ++ + L V P + +
Sbjct: 276 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA---PKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 2205 --------VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
V+W HN K + + L I + D G Y C A N+ G+ +
Sbjct: 333 VTGLPAPNVVWSHNAKPL-SGGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDKY 387
Query: 2257 SSCTLLV 2263
+ V
Sbjct: 388 FETLVQV 394
Score = 66.5 bits (162), Expect = 4e-11
Identities = 46/284 (16%), Positives = 83/284 (29%), Gaps = 36/284 (12%)
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI 1337
+L F + G Y + A AG S+ + P
Sbjct: 60 DEGSLVFLRPQASDEGHY--QCFAETPAGVAS-SRVI-SFRKTYLIASPAKTHEKTPIE- 114
Query: 1338 TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTV----GNL---- 1389
L P I K D N+ GNL
Sbjct: 115 -GRPFQLDCVLPNAYPKPLITWK------KRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 1390 ----SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMD----LSGVRDITVKAG 1441
+ Y + A N A + E + + N +D+ KAG
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 1442 EDFSIHVPFMAFPQPAAFWFANDSIID-DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRL 1500
+ I+ + + P +F N ++ + + R+ + + L+ K + D G Y
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 1501 QLKNPAGFD-TATLHVRVLDRPH----PPENLHADEFAGDSLTL 1539
++ N G +L + V+ P P + + + G +T+
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ--GQDVTI 329
Score = 65.7 bits (160), Expect = 6e-11
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 7/142 (4%)
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR-----FVAPKIKTPLKDIIIK 286
T V + Y++ A N E + + P + KD++ K
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225
Query: 287 AGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTY 345
AG + + + P + +GK++ + R T + + T D G Y
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY 285
Query: 346 HLELRNTSGRDEG-SFTVTVLE 366
E+ N G+ + S +TV+
Sbjct: 286 TCEVDNGVGKPQKHSLKLTVVS 307
Score = 58.8 bits (142), Expect = 1e-08
Identities = 38/226 (16%), Positives = 66/226 (29%), Gaps = 25/226 (11%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
A G + + + P + T + G F L P P
Sbjct: 81 AETPAGVASSRVISFRKTYLIAS--PAKTHEKTPIE-GRPFQ-LDCVLP---NAYPKPLI 133
Query: 623 IIQKKEKGNPYWMNALEVPANKT----------DVKIPDLTKGQEYEFRVIAVNEAGPSE 672
+K+ G + + T V D++ +Y A N A E
Sbjct: 134 TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY--VCTAKNAAVDEE 191
Query: 673 PSDASDIIMC-----KQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGK 727
I P + KD++ KAG + + + P + +GK
Sbjct: 192 VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGK 251
Query: 728 ELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
++ + R T + + T D G Y E+ N G+ +
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Score = 54.5 bits (131), Expect = 2e-07
Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 26/200 (13%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSD 1471
PV+ + QP ++ + + Q + W + + +
Sbjct: 4 DKYPVLKD-QP----------AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE 52
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVLDR-PHPPENL 1527
+ + SLV Q SD G Y+ + PAG + L P
Sbjct: 53 HNAALRK--DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEK 110
Query: 1528 HADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSS-YVTTP-----FVRV 1581
E G L P IT + T P F V
Sbjct: 111 TPIE--GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168
Query: 1582 RNLAIGSTYEFRVMAENQYG 1601
+ Y++ A+N
Sbjct: 169 TKEDVSDIYKYVCTAKNAAV 188
Score = 53.8 bits (129), Expect = 4e-07
Identities = 43/258 (16%), Positives = 71/258 (27%), Gaps = 51/258 (19%)
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKD- 1340
T D+ + KY A N A + + K P ++KD
Sbjct: 166 TIVTKEDVSDIYKY--VCTAKNAAV-DEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222
Query: 1341 ------SVTL------------SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 1382
+ ++ +G + G + +
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYF---KNGK-DVNGNPEDRITR--------HNRTSGK 270
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVK 1439
+E + N G + K S + V P KP + I VK
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQ--KHSLKLTVVSAPKYEQKPE------KVIVVK 322
Query: 1440 AGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYR 1499
G+D +I P P W N + + T+ + LV+K + D G Y
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG------RATVTDSGLVIKGVKNGDKGYYG 376
Query: 1500 LQLKNPAGFDTATLHVRV 1517
+ N G V+V
Sbjct: 377 CRATNEHGDKYFETLVQV 394
Score = 53.8 bits (129), Expect = 5e-07
Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 43/211 (20%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G+ + C P + K+ G ++ ++
Sbjct: 227 GDVTMIYCMY-------GSNP----MGYPN-YFKN-------------GKDVNGNPEDRI 261
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
++ ++ T D EG Y N G + V P++
Sbjct: 262 TRHNRTSGKRLL---FKTTLPED--EGV-YT--CEVDNGVGKPQKHSLKLTVVSAPKY-- 311
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
+ P K I++K G+ + + + G P P V W+ + K L T + + I
Sbjct: 312 --EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGL---VI-- 364
Query: 334 TVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
K D G Y N G V V
Sbjct: 365 -KGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 48.4 bits (115), Expect = 2e-05
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKT-DSVRTTVTSIGYH 329
P +K +++ + +E G + +W DGK + G
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + SD G Y +G S ++
Sbjct: 65 VF---LRPQASDEGHYQCFAETPAGVAS-SRVISF 95
Score = 47.2 bits (112), Expect = 5e-05
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKT-DSVRTTVTSIGYHT 745
P +K +++ + +E G + +W DGK + G
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65
Query: 746 IVNTVNTKRSDSGTYHLELRNTSG 769
+ + SD G Y +G
Sbjct: 66 F---LRPQASDEGHYQCFAETPAG 86
Score = 46.1 bits (109), Expect = 1e-04
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 7/110 (6%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVTWTIDGKELKTD------SVRTTVT 324
+ G+ ++ P P +TW + R T
Sbjct: 99 YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 325 SIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTT 374
G SD Y +N + +E ++ ++K N+
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSG 208
Score = 44.1 bits (104), Expect = 5e-04
Identities = 22/142 (15%), Positives = 37/142 (26%), Gaps = 12/142 (8%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVT 721
A AG +S +I ++ +L + G+ ++ P P +T
Sbjct: 80 FAETPAG----VASSRVISFRKTYL-IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLIT 134
Query: 722 WTIDGKELKTD------SVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 775
W + R T G SD Y +N + +E
Sbjct: 135 WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Query: 776 TIVPDHLKNLWNTKKSLHPVLH 797
N+ PV
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQ 216
Score = 43.7 bits (103), Expect = 6e-04
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 688 APKI-KTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
APK + P K I++K G+ + + + G P P V W+ + K L T + + I
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGL---VI 364
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGS 774
K D G Y N G
Sbjct: 365 ---KGVKNGDKGYYGCRATNEHGDKYFE 389
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 120 bits (304), Expect = 7e-30
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 32/203 (15%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQL 1742
+ Y LE+IG G +GVV++ + G FA K I + E E IR EI I+ +L
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEK--EDEGIPSTTIR-EISILKEL 57
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
H ++ L+D +VL+FE L +L + + + + +++ Q+ + +
Sbjct: 58 KHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYC 116
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP-----NEVVKISTGTAEFAAP 1856
H++ ++H D+KP+N++ +K+ DFGLA P +E+V T + AP
Sbjct: 117 HDRRVLHRDLKPQNLLINREG--ELKIADFGLARAFGIPVRKYTHEIV-----TLWYRAP 169
Query: 1857 EIV--EREPVGFYT---DMWAVG 1874
+++ ++ Y+ D+W+VG
Sbjct: 170 DVLMGSKK----YSTTIDIWSVG 188
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 110
Score = 113 bits (286), Expect = 1e-29
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P P P + L W PPL DGGSPI+ Y VE ++
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ-GSEVEC 67
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDP 1145
V L + Y FR+RA N+ G E + TA P + P
Sbjct: 68 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA--PGSGPSS 109
Score = 110 bits (278), Expect = 1e-28
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 1222 PFDPPDAPSQPEVTGY-SPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPT 1279
PP P + G + L W PP GG PI+ Y VE E Y
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQG 62
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ + TV L G Y FR+ A N+ G G S+ DI P +
Sbjct: 63 SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT-----TAPGSGPSS 109
Score = 107 bits (270), Expect = 2e-27
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 1326 PDPPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPV 1383
P P P++ R + L W PP DGG+ I Y V+ D +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE-- 66
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
TV +L G+ Y+FR+ A N+ G ++
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 107 bits (268), Expect = 3e-27
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 588 PDAPEKPTVKDW-GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTD 646
P P ++ + L W PPL DGGSPI+ Y ++ + +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSE--VE 66
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ L G+ Y FR+ A N+ G S+ DI
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT 100
Score = 104 bits (262), Expect = 2e-26
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 170 PFGRPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 228
G P P + + L W PP DGGSPIS Y +E P + + +
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGS 63
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+V L G+ Y FR+ A NK G G S+ T
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
Score = 101 bits (254), Expect = 2e-25
Identities = 26/97 (26%), Positives = 35/97 (36%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P P P L W P DGG+ I Y VE +E + S
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 68
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
+L+ G Y+FR++A NK+G TA
Sbjct: 69 VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105
Score = 99.3 bits (248), Expect = 1e-24
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 475 GASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGT 534
G+S P P P P + +L W P+ DGG+PI Y +E I +
Sbjct: 1 GSSGSSGP-----PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDE 55
Query: 535 WSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
+ + V L+ K Y FR++A N +G E T A
Sbjct: 56 PREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 98.6 bits (246), Expect = 2e-24
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 1521 PHPPENLHA-DEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 1579
P P + L W PP +GGS I+ Y VE +V
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 68
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
V +L G TY FR+ A N+ G + D A P P +
Sbjct: 69 -VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA--PGSGPSS 109
Score = 65.4 bits (160), Expect = 1e-12
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 814 PDPPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVP 866
P P P++ R + L W PP DGG+ I Y V+ D +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGS 63
Score = 62.4 bits (152), Expect = 1e-11
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 1617 PFDVPGAPGAPKGVDSTED-SISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHI 1675
PG P+ + I L W P DGGSPI Y VE I D+ +
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQG 62
Query: 1676 PDTSLKYT 1683
+ +
Sbjct: 63 SEVECTVS 70
Score = 60.8 bits (148), Expect = 5e-11
Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y +E V S + TV LL G TY FR+RA N G +
Sbjct: 43 CYSVEMSP--IEKDEPREVYQGS--EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCD 98
Query: 961 PVVA 964
A
Sbjct: 99 ITTA 102
Score = 58.5 bits (142), Expect = 3e-10
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
S Y +EM+ D + V + TV L GK Y FR+R N G +
Sbjct: 42 SCYSVEMSPIEKDEPREV-YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDI- 99
Query: 487 KPSPPEGP 494
+P GP
Sbjct: 100 TTAPGSGP 107
Score = 55.8 bits (135), Expect = 3e-09
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 1139 PFTVPDPPGQPQIVDWDTNN-ATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
P P P++ L W P DGGS I Y VE
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDE 55
Score = 54.7 bits (132), Expect = 8e-09
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 1875 VLAYVLDVAE--DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y ++++ R + V SLL G Y FR++A N GF S
Sbjct: 41 ISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 97
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 120 bits (302), Expect = 2e-29
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 8/199 (4%)
Query: 1685 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI---RKEIDIMNQ 1741
+ + Y + +G G G V+ + I A K + + + + ++E +
Sbjct: 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGR 90
Query: 1742 LHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
L P ++ +HD E D ++ + ++G +L + ++ + +RQ+ A+
Sbjct: 91 LQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR-QGPLAPPRAVAIVRQIGSALDA 149
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST--GTAEFAAPEIV 1859
H H DVKPENI+ + ++DFG+A+ ++ ++ GT + APE
Sbjct: 150 AHAAGATHRDVKPENILVSADD--FAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERF 207
Query: 1860 EREPVGFYTDMWAVGVLAY 1878
+ D++A+ + Y
Sbjct: 208 SESHATYRADIYALTCVLY 226
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET:
TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A*
3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 120 bits (304), Expect = 2e-29
Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 44/228 (19%)
Query: 1675 IPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---- 1730
+ V Y+ L +IG G FG V + R RKTG A K + + + EKE
Sbjct: 5 YDSVECPFCDEV-SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN--EKEGFPI 61
Query: 1731 -LIRKEIDIMNQLHHPKLINLHD--------AFEDDDEMVLIFEFLSGGELFERITAPDY 1781
+R EI I+ L H ++NL + + L+F+F +L ++
Sbjct: 62 TALR-EIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLV 119
Query: 1782 KMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP- 1840
K + +E+ M+ + + ++H I+H D+K N++ +K+ DFGLA
Sbjct: 120 KFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVL--ITRDGVLKLADFGLARAFSLA 177
Query: 1841 ---------NEVVKISTGTAEFAAPEIV--EREPVGFYT---DMWAVG 1874
N VV T + PE++ ER+ Y D+W G
Sbjct: 178 KNSQPNRYTNRVV-----TLWYRPPELLLGERD----YGPPIDLWGAG 216
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 113 bits (284), Expect = 3e-29
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G S + PD P + S+ +SW+ P+ + ++GY V+ +
Sbjct: 1 GSSGSSGS---HDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQ 55
Query: 1366 KKG-GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPN 1424
G+ N V +L Y FRV A ++ G + G + +E Q +
Sbjct: 56 LLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE--REGVITIESQVS 113
Query: 1425 KP 1426
P
Sbjct: 114 GP 115
Score = 112 bits (283), Expect = 3e-29
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 1218 RIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANN 1276
+ PD P++ + P+S+ ++W P P+ GY VE + GE R N
Sbjct: 10 DSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNI 67
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ V DL Y FRV A ++ G G+ + ++ + P +
Sbjct: 68 PNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIE-----SQVSGPSS 117
Score = 97.9 bits (244), Expect = 5e-24
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Query: 574 ETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPY 633
++ + +R PD P + G + ++W+ P + P+ Y ++ +
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGE 61
Query: 634 WMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+T V + DL Y FRV A ++ G + I
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITI 108
Score = 97.5 bits (243), Expect = 7e-24
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEK 221
++ G PD P + + G + + W P+ + P+ Y +E + G +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHR 64
Query: 222 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
I T+ V DL Y FRV A ++ G G +T + + P
Sbjct: 65 LNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115
Score = 90.2 bits (224), Expect = 3e-21
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 1505 PAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNS 1564
+G + P P L SL + W PR + Y VE + N
Sbjct: 2 SSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNG 59
Query: 1565 TVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
+++ V V +L +Y FRV A++Q G + + I+++
Sbjct: 60 GELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQ-----VSG 114
Query: 1624 PGA 1626
P +
Sbjct: 115 PSS 117
Score = 89.4 bits (222), Expect = 5e-21
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 1017 GYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 1076
G S SS S A P P + S + P S +SW+ P + P+
Sbjct: 1 GSSGSSGSHDSRLTA--------GVPDTPTRLV-FSALGPTSLRVSWQEPRCER--PLQG 49
Query: 1077 YVVEKYESATGFWSKLS-SFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSIT 1135
Y VE G +L+ + V L N Y FRVRA++Q G E IT
Sbjct: 50 YSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE--GVIT 107
Query: 1136 AKFPFTVPDPPGQ 1148
+ + P
Sbjct: 108 IE---SQVSGPSS 117
Score = 84.4 bits (209), Expect = 3e-19
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGT 130
+P P L S + +S + W+ PR + + Y VE + G + + + T
Sbjct: 17 VPDTP-TRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIPNPAQT 73
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 174
E+L+ H Y FRV+A ++ G + IT + P
Sbjct: 74 SVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115
Score = 78.6 bits (194), Expect = 4e-17
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 11/120 (9%)
Query: 475 GASEPLDPLFP-DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRG 533
G+S D P P L S + S ++SW+ P + P+ Y +E ++ G
Sbjct: 4 GSSGSHDSRLTAGVPDTP-TRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGG 60
Query: 534 TWS--DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
+ V L+ Y+FRV+A + G E T ++ P
Sbjct: 61 ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQ-----VSGP 115
Score = 66.3 bits (162), Expect = 7e-13
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDA 862
+ + PD P + S+ +SW+ P+ + ++GY V+ + G+
Sbjct: 8 SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRL 65
Query: 863 NSVPVPNPVHTL 874
N +
Sbjct: 66 NIPNPAQTSVVV 77
Score = 65.1 bits (159), Expect = 2e-12
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
++ VP P S+ + W +PR + P+Q Y VE +L++ + +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHR 64
Query: 1670 ASMAHIPDTSL 1680
++ + TS+
Sbjct: 65 LNIPNPAQTSV 75
Score = 59.3 bits (144), Expect = 2e-10
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----I 956
GY +E + L GG +N +P V LL +Y FRVRA++ +G I
Sbjct: 49 GYSVEYQLLN-GGELHR-LNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI 106
Query: 957 TTKEPVVA 964
T + V
Sbjct: 107 TIESQVSG 114
Score = 54.7 bits (132), Expect = 9e-09
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 1874 GVLAYVLD--VAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS-- 1929
+ Y ++ + N + +V LL H Y FRV+A++ G+ +
Sbjct: 46 PLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
Query: 1930 -TSKERPKFP 1938
T + + P
Sbjct: 106 ITIESQVSGP 115
Score = 50.5 bits (121), Expect = 3e-07
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1133 SITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
S ++ VPD P + + + W PR + +QGY VE++
Sbjct: 8 SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLL 57
Score = 49.7 bits (119), Expect = 4e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP-- 485
Y +E + P + V+ L YVFR+R ++ G + +
Sbjct: 50 YSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIE 109
Query: 486 DKPSPP 491
+ S P
Sbjct: 110 SQVSGP 115
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 122 bits (306), Expect = 3e-29
Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 44/236 (18%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI---RKEIDIMNQL- 1742
+G +++TG F + I ++E+ + L
Sbjct: 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLR 136
Query: 1743 ---------------------HHPKLINLHDAFEDDDEMVLIFEFL-------SGGELFE 1774
P+ + D+ +M ++ F + E
Sbjct: 137 GIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGE 196
Query: 1775 RITA---PDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMID 1831
+ + + + QV + +H ++H ++P +I+ R V +
Sbjct: 197 VLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRG--GVFLTG 254
Query: 1832 FGLATKLDPNEVVKIST--GTAEFAAPEIVEREP-----VGFYTDMWAVGVLAYVL 1880
F + + V I E A ++ + F D W +G+ Y +
Sbjct: 255 FEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI 310
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor receptor,
extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C
2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C
1fq9_C* 1evt_C
Length = 231
Score = 116 bits (291), Expect = 6e-29
Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 36/220 (16%)
Query: 2089 RRQAAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKR 2143
+ AP + ++ + +VKF C PT+ W N +E KQ + +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 2144 YAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY 2203
++ ++ D+G Y EN YG L+V + I AN
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL-PANAS 129
Query: 2204 -------------------DVIWLHNNKE-----------IKPSNDFAYSSVAHVHTLKI 2233
+ W+ + ++ + + ++ L +
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNP 2273
+ D+G Y C+ N G++ S L V G
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 98.0 bits (244), Expect = 1e-22
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 45/223 (20%)
Query: 2006 RRQAAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKR 2060
+ AP + ++ + +VKF C PT+ W N +E KQ + +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQD----------------TSF------DRRQAAPRFVI 2098
++ L ++ D ++ R
Sbjct: 71 VRNQHWS-------LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123
Query: 2099 KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQE-----------LKQSVKFMKRYAGD 2147
P +A G V+F C+V + A P + W + ++ + +K + +
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 2148 DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLP 2190
+ D GEYI + N+ G + +L V K P
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 69.2 bits (169), Expect = 1e-12
Identities = 27/171 (15%), Positives = 43/171 (25%), Gaps = 53/171 (30%)
Query: 2204 DVIWLHNNKEIKPSNDFA-YSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+ WL N KE K + Y +L + + P D G YTC N+ G + L
Sbjct: 50 TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
Query: 2263 VQ--------------------------------------VSWYKDGNPVSDDPAT---- 2280
V + W K
Sbjct: 110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 169
Query: 2281 ------YQFTQIGQTYKMKILSTTLDDVGQYS--A--QMGGIIAAFSLNVV 2321
+ + + + T D G+Y +G + L V+
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 66.5 bits (162), Expect = 8e-12
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 14/138 (10%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPN-KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1458
+ NE G+ + + V E+ +P++ + + G D + QP
Sbjct: 94 VVENEYGSIN---HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 150
Query: 1459 FWF----------ANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF 1508
W D + + + N+ L + N +D G+Y ++ N G
Sbjct: 151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Query: 1509 DTATLHVRVLDRPHPPEN 1526
+ + VL + P
Sbjct: 211 ANQSAWLTVLPKQQAPGR 228
Score = 62.6 bits (152), Expect = 2e-10
Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
+A + + K++ P + + R V A P P P
Sbjct: 1 MAEDFVSENSNNKRA-PYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMR 52
Query: 1460 WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
W N ++ SL++++ SD G Y ++N G T H+ V++
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE 112
Query: 1520 RPH--------PPENLHADEFAGDSLTL 1539
R P N G +
Sbjct: 113 RSRHRPILQAGLPANASTVV--GGDVEF 138
Score = 58.4 bits (141), Expect = 4e-09
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 256 GEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK 315
E S P + + + + A + G P P + W +GKE K
Sbjct: 7 SENSNNKRA----PYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 316 TDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + + +++ + SD G Y + N G ++ + V+E
Sbjct: 62 QEHRIGGYKVRNQHWSLIME-SVVPSDKGNYTCVVENEYGSINHTYHLDVVE 112
Score = 50.3 bits (120), Expect = 2e-06
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 265 VTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT-----DSV 319
V + R + G + + + P + W ++ +
Sbjct: 110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 169
Query: 320 RTTVTSIGYHTIVNT-----VNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
V N N +D+G Y ++ N G+ S +TVL
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221
Score = 48.4 bits (115), Expect = 1e-05
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 688 APKIKTPLK----DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIG 742
AP K + A + G P P + W +GKE K + +
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 743 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ +++ + SD G Y + N G ++ +
Sbjct: 75 HWSLIME-SVVPSDKGNYTCVVENEYGSINHTYHL 108
Score = 44.1 bits (104), Expect = 2e-04
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 6/114 (5%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
+ NE G ++ + R + G + + + P + W
Sbjct: 94 VVENEYGSIN-HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 723 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFT 776
++ + G + ++ + S L L N + D G +
Sbjct: 153 IKHVEKNG-----SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYI 201
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 114 bits (287), Expect = 8e-29
Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 29/197 (14%)
Query: 2092 AAPRFVI--KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2149
+ P + K +A G+ + F+CR P ++WF N + ++++ K+ G +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNT 58
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN-------- 2201
+ D G Y+ RA N G E+ FL V + P I +
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ---PHIIQLKNETTYENGQVTLV 115
Query: 2202 -------KYDVIWLHNNKEIKPSND-------FAYSSVAHVHTLKIAEIFPEDSGVYTCE 2247
++ W + +L I ++ DSG Y CE
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 2248 AFNDEGESFSSCTLLVQ 2264
A + G S L ++
Sbjct: 176 AASRIGGHQKSMYLDIE 192
Score = 99.9 bits (249), Expect = 1e-23
Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 36/202 (17%)
Query: 2009 AAPRFVI--KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ P + K +A G+ + F+CR P ++WF N + ++++ + Y
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN---------EKY 51
Query: 2067 TFYSSLRKLQIDRFSIQDT--------------SFDRR---QAAPRFVIKPQSAFCYEGQ 2109
S +L + D P I+ ++ YE
Sbjct: 52 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENG 110
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQS-------VKFMKRYAGDDYTFVINRTKMEDRG 2162
V C P +TW + + + + I K+ D G
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 2163 EYIIRAENHYGYREEVVFLNVQ 2184
Y A + G ++ ++L+++
Sbjct: 171 RYDCEAASRIGGHQKSMYLDIE 192
Score = 69.1 bits (169), Expect = 4e-13
Identities = 25/139 (17%), Positives = 39/139 (28%), Gaps = 40/139 (28%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ W N K I+ + Y L + I D G Y C A N GE L V
Sbjct: 36 ISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
Query: 2265 --------------------------------VSWYK--DGNPVSDDPAT----YQFTQI 2286
++W + DG ++ + +
Sbjct: 94 VQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Query: 2287 GQTYKMKILSTTLDDVGQY 2305
+ + I L D G+Y
Sbjct: 154 HGSSSLHIKDVKLSDSGRY 172
Score = 59.4 bits (144), Expect = 1e-09
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 273 APKIKTPLK--DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
P I P K + + G+ + + G P P ++W +GK ++ + S T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET---ISKTNTTTI 376
+ N SD G Y N +G DE + V I N TT
Sbjct: 62 V---RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTY 107
Score = 59.1 bits (143), Expect = 1e-09
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH 1475
+ + ++ + T + GE+ + P+PA WF N +I++++
Sbjct: 4 AISMPQKS----------FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-- 51
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH--PPENLHADEFA 1533
L ++ L V+N SDGG Y + N AG D ++V +PH +N E
Sbjct: 52 -ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE-- 108
Query: 1534 GDSLTL 1539
+TL
Sbjct: 109 NGQVTL 114
Score = 57.9 bits (140), Expect = 3e-09
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
A N+AG E + + V QP+ + +++ T ++ P P
Sbjct: 76 RATNKAGEDE---KQAFLQVFVQPH-----IIQLKNETTYENGQVTLVCDAEGEPIPEIT 127
Query: 1460 WFANDSIIDDS------DTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
W + D R+ + S+SL +K+ + SD G+Y + + G ++
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 187
Query: 1514 HVRV 1517
++ +
Sbjct: 188 YLDI 191
Score = 52.1 bits (125), Expect = 3e-07
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 688 APKIKTPLK--DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
P I P K + + G+ + + G P P ++W +GK ++ + S T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ N SD G Y N +G DE +
Sbjct: 62 V---RNIINSDGGPYVCRATNKAGEDEKQAFL 90
Score = 50.2 bits (120), Expect = 1e-06
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL------KTDSVRTTVT 324
FV P I K+ + + GEP PE+TW K+ R V
Sbjct: 93 FVQPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151
Query: 325 SIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ ++ + K SDSG Y E + G + S + +
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 43.6 bits (103), Expect = 2e-04
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL------KTDSVRTTVTSI 741
P I K+ + + GEP PE+TW K+ R V
Sbjct: 95 QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Query: 742 GYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ ++ + K SDSG Y E + G + S +
Sbjct: 154 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
Score = 39.4 bits (92), Expect = 0.005
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
+SW+++G + ++ ++ G ++ + + D G Y A G L
Sbjct: 35 AISWFRNGKLIEENE---KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
Query: 2320 V 2320
V
Sbjct: 92 V 92
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 110 bits (278), Expect = 1e-28
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 584 EFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA---LEV 640
D P +P V + + + P GG PI Y + + G W + +
Sbjct: 3 HMDTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 641 PANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ + V I L Y R+ A+N G E S AS+
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Score = 110 bits (276), Expect = 2e-28
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRAN---N 1276
S D P +PS +V YS S+ + ++ P GG PI Y E R G W
Sbjct: 2 SHMDTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
+ T+ L+ Y R+ A+N G G+ S ++
Sbjct: 61 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Score = 105 bits (263), Expect = 1e-26
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDAN---SVPVPN 1381
P P +V+ + + + P+ GG I Y + R G W
Sbjct: 7 PSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 1382 PVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ T+ L Y R+ A+N G E S + QP
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFKTQP 104
Score = 96.7 bits (241), Expect = 1e-23
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKA---CIVPANI 229
P P V + +++ P+ GG PI +Y E + W +
Sbjct: 7 PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 230 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
++ LK Y R+ A+N G GE S AS T
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 95.9 bits (239), Expect = 2e-23
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
D PS P + + + + P GG PI Y E W +
Sbjct: 5 DTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 1100 ----AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSIT 1135
+ GL+ Y R+ A N G+ E T
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 92.5 bits (230), Expect = 3e-22
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 1518 LDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK----VSSY 1573
+D P P + ++ + + + P GG I Y E + VW
Sbjct: 4 MDTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPI 1612
V + L +TY R+ A N GL + + +
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Score = 84.0 bits (208), Expect = 3e-19
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV--- 542
D PS P + ++ + P GG PIL Y E + W
Sbjct: 5 DTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 543 --SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ L Y R+ A+N G + ++
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Score = 82.1 bits (203), Expect = 2e-18
Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 7/99 (7%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-----V 127
PS P S+ +++ P GG IL Y E + W
Sbjct: 6 TPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 128 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 166
L Y R+ A+N G T
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 79.7 bits (197), Expect = 1e-17
Identities = 27/155 (17%), Positives = 39/155 (25%), Gaps = 62/155 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
P P +V+ + + + P+ GG I Y + R G W
Sbjct: 7 PSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK---------- 55
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
W A + T+
Sbjct: 56 ------------------------------------------WYDAKEASM--EGIVTIV 71
Query: 933 RLLEGTTYEFRVRAENLQGLSEP-----ITTKEPV 962
L TTY R+ A N +GL E T +PV
Sbjct: 72 GLKPETTYAVRLAALNGKGLGEISAASEFKT-QPV 105
Score = 71.3 bits (175), Expect = 8e-15
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 1617 PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASM-AHI 1675
D P +P + V+ + + + +P GG PI +Y E R + ++ W A
Sbjct: 3 HMDTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 1676 PDTSLKYT 1683
T
Sbjct: 62 ASMEGIVT 69
Score = 53.5 bits (129), Expect = 1e-08
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRS 1183
P P Q V+ ++ A + +D P GG I YK E+R+
Sbjct: 3 HMDTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRA 46
Score = 51.2 bits (123), Expect = 1e-07
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWKT----VPGFCPKEFFTVKGLTEGKKYVFRIRTEN 472
+PI +Y E G + W + + T+ GL Y R+ N
Sbjct: 33 GGVPI-----LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 87
Query: 473 MYGASEPLDP 482
G E
Sbjct: 88 GKGLGEISAA 97
Score = 50.1 bits (120), Expect = 2e-07
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 1875 VLAYVLDVAE--DTNWRVAND---YLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+L Y + + W + + L Y R+ A N G + S+
Sbjct: 37 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 96
Query: 1930 TSK 1932
S+
Sbjct: 97 ASE 99
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase; HET:
ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 118 bits (298), Expect = 1e-28
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 11/197 (5%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDI-MNQLHHP 1745
D + + E+G GA+GVV + R +G I A K I + N ++ + + ++DI M + P
Sbjct: 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 110
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGG--ELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
+ + A + ++ + E + + ++++ + E + + +A++H+H
Sbjct: 111 FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH 170
Query: 1804 EK-NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPE-IVER 1861
K ++IH DVKP N++ VKM DFG++ L + I G + APE I
Sbjct: 171 SKLSVIHRDVKPSNVLINALG--QVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPE 228
Query: 1862 EPVGFYT---DMWAVGV 1875
Y+ D+W++G+
Sbjct: 229 LNQKGYSVKSDIWSLGI 245
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 123 bits (310), Expect = 1e-28
Identities = 62/388 (15%), Positives = 99/388 (25%), Gaps = 109/388 (28%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ + S + +V FTC T W+ NNQ L S
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS---------PRLQ 158
Query: 2068 FYSSLRKLQIDRFSIQDT-----------SFDRRQAA--------PRFVIKPQSAFCYEG 2108
+ R L + + DT S R + I P + G
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
+++ +C + +WF N + + I + + G Y +A
Sbjct: 219 ENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQA 267
Query: 2169 ENHYGYREE--VVFLNVQRKYDLPVIHYKNHRRANKYD--------------VIWLHNNK 2212
N V + V + P I N D +W NN+
Sbjct: 268 HNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQ 327
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV--------- 2263
+ S S+ TL + + D G Y C N+ S +L
Sbjct: 328 SLPVSPRLQLSN--DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385
Query: 2264 --------------------------QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILST 2297
Q SW DGN ++ I +
Sbjct: 386 ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------------ELFISNI 433
Query: 2298 TLDDVGQYS--A--QMGGIIAAFSLNVV 2321
T + G Y+ A G +
Sbjct: 434 TEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 121 bits (304), Expect = 6e-28
Identities = 51/385 (13%), Positives = 90/385 (23%), Gaps = 109/385 (28%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
F+ S + +V TC I T W+ NNQ L S
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEP-EIQNTTYLWWVNNQSLPVS---------PRLQLS 338
Query: 2070 SSLRKLQIDRFSIQDT-------------------SFDRRQAAPRFVIKPQSAFCYEGQS 2110
+ R L + + D + I P + G +
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVN 398
Query: 2111 VKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN 2170
+ +C + +W + + + I+ ++ G Y +A N
Sbjct: 399 LSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANN 447
Query: 2171 HYGYREEVVFLNVQRKYDLPVIHYKNHR----------------RANKYDVIWLHNNKEI 2214
+ +LP ++ A +W N + +
Sbjct: 448 SASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSL 507
Query: 2215 KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL------------ 2262
S TL + + D+ Y C N + S L
Sbjct: 508 PVSPR--LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565
Query: 2263 -----------------------VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTL 2299
Q SW +G P Q I T
Sbjct: 566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH----------TQVL--FIAKITP 613
Query: 2300 DDVGQYS--AQ--MGGIIAAFSLNV 2320
++ G Y+ G + ++
Sbjct: 614 NNNGTYACFVSNLATGRNNSIVKSI 638
Score = 113 bits (284), Expect = 2e-25
Identities = 63/375 (16%), Positives = 99/375 (26%), Gaps = 97/375 (25%)
Query: 2012 RFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSS 2071
+ I+ EG+ V + +W+ + T +
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 2072 LRK---------LQIDRFSIQDT-------------------SFDRRQAAPRFVIK-PQS 2102
L I DT F P+ I S
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRG 2162
+ +V FTC T W+ NNQ L S + + + + T + D
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL--QLSNGNRTLTLFNVTRNDTA 177
Query: 2163 EYIIRAENHYGY-REEVVFLNVQRKYDLPVIHYKNHR-RANK-------------YDVIW 2207
Y +N R + V LNV D P I N R+ + W
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237
Query: 2208 LHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV-- 2265
N + + L I I +SG YTC+A N + + + V
Sbjct: 238 FVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286
Query: 2266 ----------------------------------SWYKDGNPVSDDPATYQFTQIGQTYK 2291
W+ + + P Q + +T
Sbjct: 287 EPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSP-RLQLSNDNRT-- 343
Query: 2292 MKILSTTLDDVGQYS 2306
+ +LS T +DVG Y
Sbjct: 344 LTLLSVTRNDVGPYE 358
Score = 111 bits (280), Expect = 6e-25
Identities = 59/353 (16%), Positives = 104/353 (29%), Gaps = 75/353 (21%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM-----KRYAG 2063
I P + G+++ +C + +WF N + + + +G
Sbjct: 202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSG 261
Query: 2064 DDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATP 2123
YT + ++R + T + F+ S + +V TC I
Sbjct: 262 S-YTCQAHNSDTGLNR-TTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP-EIQNT 318
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYRE-EVVFLN 2182
T W+ NNQ L S + + + D+ T + D G Y +N + V LN
Sbjct: 319 TYLWWVNNQSLPVSPRL--QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376
Query: 2183 VQRKYDLPVIHYKNHR-----------RANKY---DVIWLHNNKEIKPSNDFAYSSVAHV 2228
V D P I A WL + + +
Sbjct: 377 VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT----------- 425
Query: 2229 HTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS---------------------- 2266
L I+ I ++SG+YTC+A N + + VS
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAV 485
Query: 2267 --------------WYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY 2305
W+ +G + P + + + + T +D Y
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSP---RLQLSNGNRTLTLFNVTRNDARAY 535
Score = 108 bits (272), Expect = 5e-24
Identities = 46/294 (15%), Positives = 85/294 (28%), Gaps = 68/294 (23%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
I P + G ++ +C + +W + + +
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-------------- 425
Query: 2069 YSSLRKLQIDRFSIQDT--------------------SFDRRQAAPRFVIK-PQSAFCYE 2107
++L I + +++ + P+ I S +
Sbjct: 426 ----QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIR 2167
+V FTC A T W+ N Q L S + + + + T + D Y+
Sbjct: 482 KDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRL--QLSNGNRTLTLFNVTRNDARAYVCG 538
Query: 2168 AENHYGY-REEVVFLNVQRKYDLPVIHYKNHR-----------RANKYD---VIWLHNNK 2212
+N R + V L+V D P+I + + W N
Sbjct: 539 IQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGI 598
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
+ + L IA+I P ++G Y C N +S + VS
Sbjct: 599 PQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 75.0 bits (184), Expect = 2e-13
Identities = 29/196 (14%), Positives = 52/196 (26%), Gaps = 40/196 (20%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ + S + +V FTC A T W+ N Q L S
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVS---------PRLQ 514
Query: 2068 FYSSLRKLQIDRFSIQDT-----------SFDRRQAA--------PRFVIKPQSAFCYEG 2108
+ R L + + D S +R +I P + G
Sbjct: 515 LSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG 574
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
++ +C + +P +W N + I + + G Y
Sbjct: 575 ANLNLSCHSASNPSPQYSWRINGIPQQ-----------HTQVLFIAKITPNNNGTYACFV 623
Query: 2169 ENHYGYREEVVFLNVQ 2184
N R + ++
Sbjct: 624 SNLATGRNNSIVKSIT 639
Score = 68.4 bits (167), Expect = 2e-11
Identities = 74/538 (13%), Positives = 141/538 (26%), Gaps = 79/538 (14%)
Query: 290 ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLEL 349
+L V + +W + + V T + + L +
Sbjct: 18 LLLVHNL--PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75
Query: 350 RNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLK-NLWNMKKSL 408
+N D G +T+ V + ++ + L K ++
Sbjct: 76 QNIIQNDTGFYTLHV------IKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129
Query: 409 HPVLHCR--GNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVF 466
C + V ++ + L N T+ +T +
Sbjct: 130 --AFTCEPETQDATYLWWVNNQSLPVSPRLQLSN--------GNRTLTLFNVTRNDTASY 179
Query: 467 RIRTENMYGA--SEPLDPLFPDKPSPPEGPLEVSNVTK-ESCKLSWRVPVDDGGAPILHY 523
+ T+N A S+ + P P ++ E+ LS P Y
Sbjct: 180 KCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA----SNPPAQY 235
Query: 524 IIEKMDISRGTWSDAGMTVS----LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+W G LF + + Y +A NS + T T
Sbjct: 236 ----------SWFVNGTFQQSTQELFIPNITVNNSGSY--TCQAHNSDTGLNRTTVTTIT 283
Query: 580 VARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE 639
V E +P + ED V L +P T + + L+
Sbjct: 284 VYA-EPPKPFITSNNSNPVEDEDAVALTCEP----EIQNTT--YLWWVNNQSLPVSPRLQ 336
Query: 640 VPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDII 699
+ + + + +T+ + NE D SD ++ +
Sbjct: 337 LSNDNRTLTLLSVTRNDVGPYECGIQNELS----VDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 700 IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGT 759
+ G L++ PP + +W IDG + + N +SG
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE------------LFISNITEKNSGL 440
Query: 760 YHLELRNTSGRDEGSFTI---VPDHLKNLWNTKKSLHPV-------LHCR--GNHLPI 805
Y + N++ + V L + + PV C +
Sbjct: 441 YTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTY 498
Score = 59.6 bits (144), Expect = 9e-09
Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 21/196 (10%)
Query: 1358 KGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNE---------AGNS 1408
KG V ++ +V P P ++ G + + + + S
Sbjct: 35 KGERVDGNRQIIGYVIGTQQATPGPAYS-GREIIYPNASLLIQNIIQNDTGFYTLHVIKS 93
Query: 1409 EPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID 1468
+ + P P +S V+ + + W+ N+ +
Sbjct: 94 DLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLP 152
Query: 1469 DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLDRP--HP 1523
S QL+ + +L + N R+D Y+ + +NP D+ L+V
Sbjct: 153 VSPRL---QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTIS 209
Query: 1524 PENLHADEFAGDSLTL 1539
P N G++L L
Sbjct: 210 PLNTSYRS--GENLNL 223
Score = 59.2 bits (143), Expect = 1e-08
Identities = 36/260 (13%), Positives = 72/260 (27%), Gaps = 35/260 (13%)
Query: 1271 WLRANNYPTTNLNFTVHDLRE--GGKYEFRVIAINEAGPGKPSKPTDI-VQCKEQKRKPD 1327
W + + + ++ G Y A N + T I V + K
Sbjct: 237 WFVNGTFQQSTQELFIPNITVNNSGSY--TCQAHNSDTGLNRTTVTTITVYAEPPKPFIT 294
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS---VPVPNPVH 1384
+ V+ +D+V L+ P + + + + N
Sbjct: 295 SNNSNPVED--EDAVALTCEPEIQN--------TTYLWWVNNQSLPVSPRLQLSNDNRTL 344
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
T+ +++ + + NE + V P+ P + S + G +
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDH--SDPVILNVLYGPDDPTISPS---YTYYRPGVNL 399
Query: 1445 SIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN 1504
S+ + P W + +I + L + N + G Y Q N
Sbjct: 400 SLSCHAASNPPAQYSWLIDGNIQQHTQE------------LFISNITEKNSGLYTCQANN 447
Query: 1505 PAGFDTATLHVRVLDRPHPP 1524
A + T + P
Sbjct: 448 SASGHSRTTVKTITVSAELP 467
Score = 58.0 bits (140), Expect = 3e-08
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 16/133 (12%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
N+ S PV + + G L++ PP + +W
Sbjct: 360 GIQNELS----VDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSW 415
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
IDG + + N +SG Y + N++ + T+ +
Sbjct: 416 LIDGNIQQHTQE------------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 368 ISKTNTTTISSKN 380
+ S+ +
Sbjct: 464 AELPKPSISSNNS 476
Score = 54.6 bits (131), Expect = 3e-07
Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 45/279 (16%)
Query: 1273 RANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
R YP +L + G Y + I + + V + K +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFY--TLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSK 121
Query: 1333 KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS---VPVPNPVHTVGNL 1389
V+ KD+V + P D + + + N T+ N+
Sbjct: 122 PVED--KDAVAFTCEPETQD--------ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNV 171
Query: 1390 SEGEEYTFRVIAVNEAGNSEPGKQSGPVI--VEEQPNKPVMDLSGVRDITVKAGEDFSIH 1447
+ + +++ N ++S VI V P+ P + + + ++GE+ ++
Sbjct: 172 TRNDTASYKCETQNPVS----ARRSDSVILNVLYGPDAPTISPL---NTSYRSGENLNLS 224
Query: 1448 VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG 1507
+ P WF N + + L + N ++ G Y Q N
Sbjct: 225 CHAASNPPAQYSWFVNGTFQQSTQE------------LFIPNITVNNSGSYTCQAHNSDT 272
Query: 1508 FD--TATLHVRVLDRP-----HPPENLHADEFAGDSLTL 1539
T + V P + ++ D++ L
Sbjct: 273 GLNRTTVTTITVYAEPPKPFITSNNSNPVED--EDAVAL 309
Score = 53.0 bits (127), Expect = 9e-07
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 23/144 (15%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
N ++ S V + + ++G+ LN+ PP + +W
Sbjct: 182 ETQNPVS----ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS--FTVTVL 365
++G ++ I N ++SG+Y + N+ + T+TV
Sbjct: 238 FVNGTFQQSTQE---------LFI---PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 366 E-----TISKTNTTTISSKNMMYL 384
I+ N+ + ++ + L
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVAL 309
Score = 52.6 bits (126), Expect = 1e-06
Identities = 35/251 (13%), Positives = 70/251 (27%), Gaps = 31/251 (12%)
Query: 1271 WLRANNYPTTNLNFTVHDLRE--GGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
WL N + ++ E G Y A N A G + + KP
Sbjct: 415 WLIDGNIQQHTQELFISNITEKNSGLY--TCQANNSAS-GHSRTTVKTITVSAELPKPSI 471
Query: 1329 PEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVP--NPVHTV 1386
KD+V + P G + + + N T+
Sbjct: 472 SSNNSKPVEDKDAVAFTCEPEAQ-------NTTYLWWVNGQSLPVSPRLQLSNGNRTLTL 524
Query: 1387 GNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSI 1446
N++ + + N + + V P+ P++ D + +G + ++
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANR--SDPVTLDVLYGPDTPIISPP---DSSYLSGANLNL 579
Query: 1447 HVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPA 1506
+ P P W N ++ L + ++ G Y + N A
Sbjct: 580 SCHSASNPSPQYSWRINGIPQQ------------HTQVLFIAKITPNNNGTYACFVSNLA 627
Query: 1507 GFDTATLHVRV 1517
++ +
Sbjct: 628 TGRNNSIVKSI 638
Score = 52.6 bits (126), Expect = 1e-06
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 16/117 (13%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
N + S PVT + D +G LN+ P P+ +W
Sbjct: 538 GIQNSVS----ANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSW 593
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
I+G + V + +++GTY + N + S ++
Sbjct: 594 RINGIPQQHTQV------------LFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 52.3 bits (125), Expect = 2e-06
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 7/124 (5%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ A N +T + + ++ + + +
Sbjct: 440 LYTCQANNSASGHS-RTTVKTITVSAE-LPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT 497
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTV 362
W ++G+ L T+ N R+D+ Y ++N+ + T+
Sbjct: 498 -YLWWVNGQSLPVSPRLQLSNGNRTLTL---FNVTRNDARAYVCGIQNSVSANRSDPVTL 553
Query: 363 TVLE 366
VL
Sbjct: 554 DVLY 557
Score = 51.9 bits (124), Expect = 2e-06
Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 6/124 (4%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I ++T+ + A N A + I + + + ++ +
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP--KPSISSNNSKPVEDKDAVAF 487
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTS 768
+ + W ++G+ L T+ N R+D+ Y ++N+
Sbjct: 488 TCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGNRTLTL---FNVTRNDARAYVCGIQNSV 543
Query: 769 GRDE 772
+
Sbjct: 544 SANR 547
Score = 51.9 bits (124), Expect = 3e-06
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 615 GGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
T Y+ + P N+T + + ++T+ + N +
Sbjct: 492 EAQNTT-YLWWVNGQSLPVSPRLQLSNGNRT-LTLFNVTRNDARAYVCGIQNSVS----A 545
Query: 675 DASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV 734
+ SD + + D +G LN+ P P+ +W I+G + V
Sbjct: 546 NRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV 605
Query: 735 RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ +++GTY + N + S
Sbjct: 606 ------------LFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637
Score = 49.6 bits (118), Expect = 1e-05
Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 37/302 (12%)
Query: 487 KPSPP---EGP---LEVSNVTKESCKLSW-RVPVDDGGAPILHYIIEKMDISRGTWSDAG 539
+ +P EG L V N+ + SW + DG I+ Y+I + G
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64
Query: 540 MTV----SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPT 595
+ SL Y + + S ++ +
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFY--TLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP 122
Query: 596 VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKG 655
V+D +D V +P T Y+ + P N+T + + ++T+
Sbjct: 123 VED--KDAVAFTCEPE----TQDAT-YLWWVNNQSLPVSPRLQLSNGNRT-LTLFNVTRN 174
Query: 656 QEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGE 715
++ N + SD ++ + + ++G+ LN+
Sbjct: 175 DTASYKCETQNPVS----ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 716 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 775
PP + +W ++G ++ I N ++SG+Y + N+ +
Sbjct: 231 PPAQYSWFVNGTFQQSTQE---------LFI---PNITVNNSGSYTCQAHNSDTGLNRTT 278
Query: 776 TI 777
Sbjct: 279 VT 280
Score = 45.3 bits (107), Expect = 2e-04
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 12/133 (9%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A N G +T P I T ++ + + + + W
Sbjct: 266 QAHNSDT-GLNRTTVTTITVYAEPPKPFI-TSNNSNPVEDEDAVALTCEPEIQNTT-YLW 322
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLE 366
++ + L T+++ R+D G Y ++N D + VL
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSV---TRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 367 -----TISKTNTT 374
TIS + T
Sbjct: 380 GPDDPTISPSYTY 392
Score = 44.9 bits (106), Expect = 3e-04
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 8/124 (6%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ + + E + V + + ++ + +
Sbjct: 85 FYTLHVIKSDLVNEEATGQFRVYPEL---PKPSISSNNSKPVEDKDAVAFTCEPET-QDA 140
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG-SFTV 362
W ++ + L T+ N R+D+ +Y E +N S +
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTL---FNVTRNDTASYKCETQNPVSARRSDSVIL 197
Query: 363 TVLE 366
VL
Sbjct: 198 NVLY 201
Score = 41.5 bits (97), Expect = 0.004
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 1438 VKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMN---------------S 1482
V G++ + V + W+ + + + + T +
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGF-DTATLHVRVLDRPHPPENLHADE---FAGDSLT 1538
ASL+++N ++D G Y L + + AT RV P + D++
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVA 130
Query: 1539 L 1539
Sbjct: 131 F 131
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 120 bits (302), Expect = 2e-28
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 25/213 (11%)
Query: 1682 YTSSVYDH----YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKE 1735
Y +DH Y++L+ IG G+FG V + + K A K + N ++ +E
Sbjct: 87 YVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMV---RNEKRFHRQAAEE 143
Query: 1736 IDIMNQL--------HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEA 1786
I I+ L + +I++ + F + + + FE LS L+E I ++ S
Sbjct: 144 IRILEHLRKQDKDNTMN--VIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLP 200
Query: 1787 EVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKI 1846
V + + + + +H+ IIH D+KPENI+ + + + +K+IDFG + I
Sbjct: 201 LVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYI 260
Query: 1847 STGTAEF-AAPEIVEREPVGFYTDMWAVGVLAY 1878
+ F APE++ G DMW++G +
Sbjct: 261 QS---RFYRAPEVILGARYGMPIDMWSLGCILA 290
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 110 bits (278), Expect = 2e-28
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 253 GGPGEPSKASAPVTCKPRFVAPKIKTPLK---DIIIKAGKILNVEIQFIGEPPPEVTWTI 309
G G + PVT + PKI+ P I K G+ LN+ + F G+P P+V WT
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 310 DGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
G L T R V + + T+ RSDSG Y L ++ + +D + + V+E
Sbjct: 61 GGAPLDTS--RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 103 bits (259), Expect = 6e-26
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 1406 GNSEPGKQSGPVIVEE--QPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFAN 1463
+ G + PV + E +P K + + K GE ++ VPF P+P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 1464 DSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ +D S RVH + + V+ + RSD G+Y L ++ DTAT+ +RV+++
Sbjct: 62 GAPLDTS--RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 92.8 bits (231), Expect = 3e-22
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 669 GPSEPSDASDIIMCKQRFLAPKIKTPLK---DIIIKAGKILNVEIQFIGEPPPEVTWTID 725
+ + ++ PKI+ P I K G+ LN+ + F G+P P+V WT
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 726 GKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
G L T R V + + T+ RSDSG Y L ++ + +D + I
Sbjct: 62 GAPLDTS--RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 67.0 bits (164), Expect = 4e-13
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 2091 QAAPRFVIKP---QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2147
P+ + Q+ G+ + P + W L S + R +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDF 77
Query: 2148 DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
D F + + D GEY + + + + V K
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 55.9 bits (135), Expect = 3e-09
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V+W + ++ + + + DSG Y + + ++ + V
Sbjct: 55 QVVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Query: 2264 Q 2264
Sbjct: 114 V 114
Score = 37.8 bits (88), Expect = 0.006
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 2008 QAAPRFVIKP---QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS 2054
P+ + Q+ G+ + P + W L S
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS 68
Score = 36.6 bits (85), Expect = 0.015
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
QV W K G P+ D + + D G+Y Q A +
Sbjct: 55 QVVWTKGGAPL--DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Query: 2320 VV 2321
VV
Sbjct: 113 VV 114
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 117 bits (294), Expect = 2e-28
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDI-MNQLHHP 1745
+ + L E+G+G G V + R RKTG++ A K + S N E+ + I ++D+ + P
Sbjct: 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
++ F + ++ + E + + + E + + +A+ ++ EK
Sbjct: 85 YIVQCFGTFITNTDVFIAMELMGTC-AEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK 143
Query: 1806 -NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPV 1864
+IH DVKP NI+ R +K+ DFG++ +L ++ S G A + APE ++
Sbjct: 144 HGVIHRDVKPSNILLDERG--QIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDP 201
Query: 1865 --GFYT---DMWAVGV 1875
Y D+W++G+
Sbjct: 202 TKPDYDIRADVWSLGI 217
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 113 bits (284), Expect = 2e-28
Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 24/193 (12%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ F +G+ + CRV + P ++W ++N+E+ + +
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN-RFAMLANNNL 59
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY-------- 2203
I D G Y E+ F ++ ++P + N
Sbjct: 60 QILNINKSDEGIYRCEGRVEAR--GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 2204 -----------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
+ W N K I+ + Y L + I D G Y C A N
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKA 175
Query: 2253 GESFSSCTLLVQV 2265
GE L V V
Sbjct: 176 GEDEKQAFLQVFV 188
Score = 104 bits (262), Expect = 2e-25
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 31/197 (15%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ F +G+ + CRV + P ++W ++N+E+ ++
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--- 57
Query: 2069 YSSLRKLQIDRFSIQDT-------------SFDRR------QAAPRFVI--KPQSAFCYE 2107
LQI + D D R P + K +A
Sbjct: 58 -----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 112
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIR 2167
G+ + F+CR P ++WF N + ++++ K++ G + + D G Y+ R
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI--LKGSNTELTVRNIINSDGGPYVCR 170
Query: 2168 AENHYGYREEVVFLNVQ 2184
A N G E+ FL V
Sbjct: 171 ATNKAGEDEKQAFLQVF 187
Score = 69.0 bits (169), Expect = 4e-13
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 45/158 (28%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V WL++N+E+ +D ++ +A+ + L+I I D G+Y CE + ++V
Sbjct: 33 AVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
Query: 2264 -------------------------------------QVSWYKDGNPVSDDPATYQFTQI 2286
+SW+++G + ++ Y
Sbjct: 92 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-KYILKGS 150
Query: 2287 GQTYKMKILSTTLDDVGQYS--A--QMGGIIAAFSLNV 2320
+ + + D G Y A + G L V
Sbjct: 151 NTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 64.0 bits (156), Expect = 2e-11
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
+R EA E + VIV P + + T + GE+ + P+
Sbjct: 71 IYRCEGRVEARG-EIDFRDIIVIVNVPP--AISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
PA WF N +I++++ L ++ L V+N SDGG Y + N AG D +
Sbjct: 128 PAISWFRNGKLIEENE---KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 1516 RVLDR 1520
+V +
Sbjct: 185 QVFVQ 189
Score = 59.4 bits (144), Expect = 9e-10
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 9/120 (7%)
Query: 248 IAVNKGGPGEPSKASA--PVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEV 305
+ GE V P P+ + + G+ + + G P P +
Sbjct: 75 EGRVEAR-GEIDFRDIIVIVNVPPAISMPQ---KSFNATAERGEEMTFSCRASGSPEPAI 130
Query: 306 TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
+W +GK ++ + S T+ N SD G Y N +G DE + V
Sbjct: 131 SWFRNGKLIEENEKYILKGSNTELTV---RNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 52.5 bits (126), Expect = 2e-07
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTP--LKDIIIKAGKI 705
+I ++ K E +R EA +I+ + P I P + + G+
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV----NVPPAISMPQKSFNATAERGEE 115
Query: 706 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELR 765
+ + G P P ++W +GK ++ + S T+ N SD G Y
Sbjct: 116 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV---RNIINSDGGPYVCRAT 172
Query: 766 NTSGRDEGSFTIV 778
N +G DE +
Sbjct: 173 NKAGEDEKQAFLQ 185
Score = 51.3 bits (123), Expect = 5e-07
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 331
+ + K G+ V + P P V+W +E+ T S R + + I
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+N +SD G Y E R + + + V
Sbjct: 62 ---LNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
Score = 50.5 bits (121), Expect = 1e-06
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
K GED + + P PA W ++ + ++ + + +L + N +S
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD--NRFAMLANNNLQILNINKS 67
Query: 1494 DGGQYRLQLKNPAG--FDTATLHVRVLDRPHP-----PENLHADEFAGDSLTL 1539
D G YR + + A D + V V P N A+ G+ +T
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER--GEEMTF 118
Score = 50.2 bits (120), Expect = 1e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 746
+ + K G+ V + P P V+W +E+ T S R + + I
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+N +SD G Y E R + + I+
Sbjct: 62 ---LNINKSDEGIYRCEGRVEARGEIDFRDII 90
Score = 34.4 bits (79), Expect = 0.27
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLN 2319
VSW V+ + ++IL+ D G Y + G I +
Sbjct: 33 AVSWLYHNEEVTTISDN--RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII 90
Query: 2320 VVKE 2323
V+
Sbjct: 91 VIVN 94
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 110 bits (277), Expect = 2e-28
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTTNL 1282
P AP + S + L W PA+ Y V + G N +
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
T+ +L Y FRV+A N+ G G+ S P + + +P+ +
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRV------ETQPESGPSS 119
Score = 110 bits (277), Expect = 3e-28
Identities = 22/107 (20%), Positives = 35/107 (32%)
Query: 574 ETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPY 633
++ P AP F+ L W+ P +D Y + ++G
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63
Query: 634 WMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ V I +L Y FRV+A N+ G E S +
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 110
Score = 109 bits (274), Expect = 6e-28
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 1308 GKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKK 1367
G + P P ++ + L+WR P D Y V K+
Sbjct: 1 GSSGSSGEHAPATTG-PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE 59
Query: 1368 GGD-WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
G N+ T+ NL Y FRV+A N+ G+ E S P+ VE QP
Sbjct: 60 GIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVETQPESG 116
Score = 98.3 bits (245), Expect = 4e-24
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 1029 PPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGF 1088
H PS P+ + S ++ L+W+ P D Y V +
Sbjct: 5 SSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63
Query: 1089 WSKLSSF-VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
++ + L Y FRV A+N++G E + + T P+
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA---PLRVE---TQPESGP 117
Query: 1148 QP 1149
Sbjct: 118 SS 119
Score = 97.9 bits (244), Expect = 6e-24
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 1565
+G P P ++ A + + L W P + + Y V
Sbjct: 3 SGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
Query: 1566 VWTKV-SSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAP 1624
+S+ V ++NL + Y FRVMA+N++G + + P++ + + +
Sbjct: 63 RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESS---APLRVETQPESGPSS 119
Query: 1625 G 1625
G
Sbjct: 120 G 120
Score = 95.9 bits (239), Expect = 3e-23
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 4/122 (3%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G S +P T P P + + L W P D Y +
Sbjct: 1 GSSGSSGEHAPATTGPL---PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT 57
Query: 214 PKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 272
+ E+ ++ +L Y FRV+A NK G GE S T
Sbjct: 58 KEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
Query: 273 AP 274
+
Sbjct: 118 SS 119
Score = 80.9 bits (200), Expect = 6e-18
Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGTY 131
PS P + S ++ L WR P D D L Y V R
Sbjct: 18 PSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQ 76
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLP 158
+NL+ Y FRV A NK G
Sbjct: 77 VTIQNLMPATVYIFRVMAQNKHGSGES 103
Score = 79.0 bits (195), Expect = 3e-17
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 477 SEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWS 536
E PS P + S V+ KL+WR P D L Y +
Sbjct: 7 GEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARER 65
Query: 537 --DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
+ + + L+ Y+FRV A N G E++ + + +
Sbjct: 66 VENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSG---ESSAPLRVETQPESGPSS 119
Score = 66.3 bits (162), Expect = 7e-13
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 872
P P ++ + L+WR P D Y V K+G N+
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 873 TL 874
T+
Sbjct: 78 TI 79
Score = 64.4 bits (157), Expect = 4e-12
Identities = 11/63 (17%), Positives = 18/63 (28%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
+P AP + I L W P D Y V + + +H +
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 1679 SLK 1681
+
Sbjct: 76 QVT 78
Score = 53.2 bits (128), Expect = 3e-08
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF--- 484
Y + + G+ + P E T++ L Y+FR+ +N +G+ E PL
Sbjct: 52 YSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
Query: 485 -PDKPSPP 491
P+
Sbjct: 112 QPESGPSS 119
Score = 51.6 bits (124), Expect = 9e-08
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+P P T L W P +D Y V +
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE 59
Score = 50.9 bits (122), Expect = 2e-07
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1875 VLAYVLDVAED--TNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
L Y + ++ RV N + + +L+ Y FRV A+N G + S+ +
Sbjct: 49 NLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLR 108
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 116 bits (294), Expect = 3e-28
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 22/198 (11%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQL-H 1743
D Y ++ ++G G + V K + PV +K++ R EI I+ L
Sbjct: 34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKR-EIKILENLRG 89
Query: 1744 HPKLINLHDAFEDDDEM--VLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
P +I L D +D L+FE ++ + + +++ ++ YM ++ +A+ +
Sbjct: 90 GPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY----QTLTDYDIRFYMYEILKALDY 145
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVER 1861
H I+H DVKP N+M + +++ID+GLA P + + + F PE++
Sbjct: 146 CHSMGIMHRDVKPHNVMIDHEHR-KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELL-- 202
Query: 1862 EPVGF--YT---DMWAVG 1874
V + Y DMW++G
Sbjct: 203 --VDYQMYDYSLDMWSLG 218
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease mutation,
kinase; 3.00A {Homo sapiens}
Length = 308
Score = 116 bits (292), Expect = 4e-28
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL------IRKEIDIMNQ 1741
Y+ + EIG GA+G V++ R+ +G+ A K + V + +R E+ ++ +
Sbjct: 9 SRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVR-EVALLRR 67
Query: 1742 LH---HPKLINLHDAF-----EDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINY 1791
L HP ++ L D + + ++ L+FE + ++ P + + +
Sbjct: 68 LEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPP--GLPAETIKDL 125
Query: 1792 MRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP-----NEVVKI 1846
MRQ + +H I+H D+KPENI+ + VK+ DFGLA VV
Sbjct: 126 MRQFLRGLDFLHANCIVHRDLKPENILVTSGG--TVKLADFGLARIYSYQMALTPVVV-- 181
Query: 1847 STGTAEFAAPEIVEREPVGFYTDMWAVG 1874
T + APE++ + DMW+VG
Sbjct: 182 ---TLWYRAPEVLLQSTYATPVDMWSVG 206
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 108 bits (272), Expect = 5e-28
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ PKI T + I IKAG N+E+ FIG P P TWT+ V + T
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTS 59
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + KR+DSG Y L+++N G DE F V V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 103 bits (258), Expect = 4e-26
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
L PKI T + I IKAG N+E+ FIG P P TWT+ V + T
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTS 59
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + KR+DSG Y L+++N G DE F ++
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 82.8 bits (205), Expect = 5e-19
Identities = 16/92 (17%), Positives = 30/92 (32%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
P+ + + G + I PT TW + + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
K D G Y ++ +N G E + + VQ
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 80.4 bits (199), Expect = 3e-18
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1430 LSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKN 1489
L+ R I +KAG ++ V F+ P P A W DS + + ++ S+ +
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTSIFFPS 64
Query: 1490 SQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
++R+D G Y+L++KN G D A V V
Sbjct: 65 AKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 69.7 bits (171), Expect = 3e-14
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W + + + + + ++ DSG Y + N+ GE + ++V
Sbjct: 33 TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Query: 2264 Q 2264
Q
Sbjct: 93 Q 93
Score = 52.3 bits (126), Expect = 3e-08
Identities = 7/60 (11%), Positives = 17/60 (28%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
P+ + + G + I PT TW + + + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Score = 41.2 bits (97), Expect = 2e-04
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSLN 2319
+W + + P T + S D G Y + +G A F +
Sbjct: 33 TATWTVGDSGAALAP-ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Query: 2320 V 2320
V
Sbjct: 92 V 92
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics
consortium, SGC, PR kinase, transferase-antibiotic
complex; HET: STU GOL; 1.65A {Homo sapiens}
Length = 310
Score = 115 bits (290), Expect = 7e-28
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 23/203 (11%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 1751
E +G G FG + R+TG + K + + KE+ +M L HP ++
Sbjct: 14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFI 73
Query: 1752 DAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLD 1811
D + I E++ GG L I + D + ++ +++ + + + ++H NIIH D
Sbjct: 74 GVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRD 133
Query: 1812 VKPENIMCQTRNSTNVKMIDFGLA---------------TKLDPNEVVKISTGTAEFAAP 1856
+ N + R + NV + DFGLA K + G + AP
Sbjct: 134 LNSHNCL--VRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAP 191
Query: 1857 EIVEREPVGFYT---DMWAVGVL 1876
E++ Y D+++ G++
Sbjct: 192 EMINGRS---YDEKVDVFSFGIV 211
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB:
3alo_A*
Length = 327
Score = 115 bits (291), Expect = 7e-28
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL-EKELIRKEIDI-MNQLHHP 1745
+ L EIG GA+G V++ + +G I A K I + + E++ + ++D+ M P
Sbjct: 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGG---ELFERITAPDYKMSEAEVINYM-RQVCEAVKH 1801
++ + A + + + E +S + D + E E++ + +A+ H
Sbjct: 82 YIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPE-EILGKITLATVKALNH 140
Query: 1802 MHEK-NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST-GTAEFAAPEIV 1859
+ E IIH D+KP NI+ N+K+ DFG++ +L + + K G + APE +
Sbjct: 141 LKENLKIIHRDIKPSNILLDRSG--NIKLCDFGISGQLV-DSIAKTRDAGCRPYMAPERI 197
Query: 1860 EREPVGF-YT---DMWAVGV 1875
+ Y D+W++G+
Sbjct: 198 DPSASRQGYDVRSDVWSLGI 217
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 119 bits (300), Expect = 7e-28
Identities = 41/300 (13%), Positives = 87/300 (29%), Gaps = 42/300 (14%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTW-FHNNQELKQSVKF--------- 2057
+ + + +S + E C + + + L + ++F
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171
Query: 2058 ----MKRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKF 2113
+ Y + +A P + S EG+
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231
Query: 2114 TCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGD-----DYTFVINRTKMEDRGEYIIR 2167
TC + +++ TW N + K K+ + GD T I+ ++ D G ++
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Query: 2168 AENHYGYREEVVFLNV----------QRKYDLPVIHYKNHR---RANKYD----VIWLHN 2210
A N +G L V + V +N + W++
Sbjct: 292 ANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYM 351
Query: 2211 NKEIKPSNDF-----AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
N+ + S++ +V L + + + G YT N + + + + V
Sbjct: 352 NRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411
Score = 119 bits (298), Expect = 1e-27
Identities = 47/308 (15%), Positives = 88/308 (28%), Gaps = 52/308 (16%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGD 2064
+A P + S EG+ TC + +++ TW N + K K+ + GD
Sbjct: 207 AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266
Query: 2065 DYTFYSSLRKLQIDRFSIQDT---------SFDRRQA--------APRFVIKPQ---SAF 2104
+ L I + D+ +F I P + F
Sbjct: 267 FNYERQAT--LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Query: 2105 CYEGQSVKFTCRVIAIATPTL-TWFHNNQELKQSVKFMKRYAGD-----DYTFVINRTKM 2158
+G++V A P W + N+ + + + + R K
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 2159 EDRGEYIIRAENHYGYREEVVFLNVQRK--------------------YDLPVIH-YKNH 2197
+ G Y N + V K + P I Y
Sbjct: 385 TEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCP 444
Query: 2198 RRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+ L + + S+ + + V I + +G C+A+ND G++ +
Sbjct: 445 GTEQRCSASVLPVDVQTLNSSGPPFGKL--VVQSSIDSSAFKHNGTVECKAYNDVGKTSA 502
Query: 2258 SCTLLVQV 2265
+
Sbjct: 503 YFNFAFKG 510
Score = 106 bits (265), Expect = 2e-23
Identities = 39/396 (9%), Positives = 81/396 (20%), Gaps = 103/396 (26%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ P G ++ C + W +
Sbjct: 34 PSPPSIHPGKSDLIVRVGDEIRLLCT----DPGFVKWTFEILDETNE------------- 76
Query: 2068 FYSSLRKLQIDRFSIQDT--------------SFDRRQAAPRFVIKPQSAFCYEGQSVKF 2113
+ + ++ +T + + + + +S + E
Sbjct: 77 --NKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLV 134
Query: 2114 TCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG 2173
C + T Q + + + R +
Sbjct: 135 RCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGK 193
Query: 2174 -YREEVVFLNVQRKYDLPVIHYKNHRRANK------------------YDVIWLHNNKEI 2214
E L V+ + + + W N +
Sbjct: 194 SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT 253
Query: 2215 KPSNDFAYSSVAHVH-----TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ----- 2264
K + + TL I+ DSGV+ C A N G + + TL V
Sbjct: 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 313
Query: 2265 --------------------------------VSWYKDGNPVSDDPATYQFTQIGQTYK- 2291
W +D Y ++ +
Sbjct: 314 NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRY 373
Query: 2292 ---MKILSTTLDDVGQYS--AQ--MGGIIAAFSLNV 2320
+ + + G Y+ AF++ V
Sbjct: 374 VSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Score = 76.6 bits (188), Expect = 5e-14
Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 41/212 (19%)
Query: 2008 QAAPRFVIKPQ---SAFCYEGQSVKFTCRVIAIATPTL-TWFHNNQELKQSVKFMKRYAG 2063
I P + F +G++V A P W + N+ + +
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367
Query: 2064 DDYTFYSSLRKLQIDRFSIQDT---------SFDRRQA--------APRFVIKPQSAFCY 2106
+ Y S +L + R + S P +
Sbjct: 368 ESNIRYVS--ELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYD------ 419
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELK-----------QSVKFMKRYAGDDYTF-VIN 2154
+ C PT+ W+ + Q++ G I+
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 2155 RTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
+ + G +A N G +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 71.2 bits (174), Expect = 2e-12
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 9/143 (6%)
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
T+ + + F A N G++ + + V ++ + + V GE+
Sbjct: 276 TISSARVNDSGVFMCYANNTFGSAN---VTTTLEVVDKG-FINIFPMINTTVFVNDGENV 331
Query: 1445 SIHVPFMAFPQPAAF-WFANDSIIDDSDTR----VHKQLTMNSASLVVKNSQRSDGGQYR 1499
+ V + AFP+P W + D ++ + L + + ++GG Y
Sbjct: 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391
Query: 1500 LQLKNPAGFDTATLHVRVLDRPH 1522
+ N +V V +P
Sbjct: 392 FLVSNSDVNAAIAFNVYVNTKPE 414
Score = 58.9 bits (142), Expect = 1e-08
Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 22/195 (11%)
Query: 1361 IVQKRKKGGDWVDANSVPVPNP-----VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSG 1415
+ G + + +P+P + +V E + S
Sbjct: 145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLH--CSVDQEGKSV----LSE 198
Query: 1416 PVIVEEQPNKPVMD--LSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDT 1472
I++ +P + ++ GE+F++ W +S +
Sbjct: 199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK 258
Query: 1473 RVHKQLTMNS----ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH----PP 1524
+ A+L + +++ +D G + N G T + V+D+ P
Sbjct: 259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPM 318
Query: 1525 ENLHADEFAGDSLTL 1539
N G+++ L
Sbjct: 319 INTTVFVNDGENVDL 333
Score = 56.6 bits (136), Expect = 8e-08
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 8/144 (5%)
Query: 228 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKA 287
I SV +G K V + P + +++
Sbjct: 169 GIMIKSVKRAYHRLCL--HCSVDQEGKSVLSEKFILKVRPAFK-AVPVVSVSKASYLLRE 225
Query: 288 GKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDS 342
G+ V TW + + K + ++ + + +DS
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 343 GTYHLELRNTSGRDEGSFTVTVLE 366
G + NT G + T+ V++
Sbjct: 286 GVFMCYANNTFGSANVTTTLEVVD 309
Score = 55.1 bits (132), Expect = 2e-07
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE-VT 306
A N G + V K + + + G+ +++ +++ P PE
Sbjct: 291 YANNTFGSAN-VTTTLEVVDKGFINIFPMINT--TVFVNDGENVDLIVEYEAFPKPEHQQ 347
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTV 362
W + + + + K ++ GTY + N+ +F V
Sbjct: 348 WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407
Query: 363 TV 364
V
Sbjct: 408 YV 409
Score = 50.4 bits (120), Expect = 6e-06
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 30/150 (20%)
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAF 1453
YTF + N N+ + V V +P +T + + F
Sbjct: 389 TYTF--LVSNSDVNAA---IAFNVYVNTKP----------EILTYDRLVNGMLQCVAAGF 433
Query: 1454 PQPAAFWFANDSIIDDSDTRVH-----------KQLTMNSASLVVKNSQRSDGGQYRLQL 1502
P+P W+ V + +S G +
Sbjct: 434 PEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKA 493
Query: 1503 KNPAGFDTATLHVRVLDRP----HPPENLH 1528
N G +A + HP + H
Sbjct: 494 YNDVGKTSAYFNFAFKGNNKEQIHPHHHHH 523
Score = 50.1 bits (119), Expect = 8e-06
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 696 KDIIIKAGKILNVEIQFIGEPPPE-VTWTIDGKELKTDSVRTTVTSIGYHTIVNTV---- 750
+ + G+ +++ +++ P PE W + + + +
Sbjct: 321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLT 380
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
K ++ GTY + N+ +F +
Sbjct: 381 RLKGTEGGTYTFLVSNSDVNAAIAFNVY 408
Score = 49.3 bits (117), Expect = 1e-05
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 6/168 (3%)
Query: 615 GGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
+T+Y ++ + G P + +P K + I + + +V++ G S S
Sbjct: 139 TDPEVTNYSLKGCQ-GKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLS 197
Query: 675 DASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDS 733
+ + + P + +++ G+ V TW + + K
Sbjct: 198 EKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE 257
Query: 734 VRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ ++ + + +DSG + NT G + T+
Sbjct: 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Score = 44.7 bits (105), Expect = 4e-04
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS----------VRT 321
P+I + ++ G P P + W + S + +
Sbjct: 411 TKPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNS 464
Query: 322 TVTSIGYHTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ G + ++++ + +GT + N G+ F
Sbjct: 465 SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 42.0 bits (98), Expect = 0.002
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 27/114 (23%)
Query: 2158 MEDRGEY----IIRAENHYGYREEVVFLNVQRKYDLPVIHY-KNHRRANKYD-------- 2204
++ ++ G + V P IH K+ D
Sbjct: 4 ARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSP---PSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 2205 ---VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGES 2255
V W + N + + ++G YTC + S
Sbjct: 61 PGFVKWTFEILDETNEN--------KQNEWITEKAEATNTGKYTCTNKHGLSNS 106
Score = 41.2 bits (96), Expect = 0.004
Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 37/207 (17%)
Query: 662 VIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT 721
++ + G S+PS + P I D+I++ G EI+ + P V
Sbjct: 16 LLLRVQTGSSQPSVSPGE------PSPPSIHPGKSDLIVRVGD----EIRLLCTDPGFVK 65
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDH 781
WT + + ++ + T + +++G Y ++ F P
Sbjct: 66 WTFEILDETNENKQNEWI---------TEKAEATNTGKYTCTNKHGLSNSIYVFVRDPA- 115
Query: 782 LKNLWNTKKSLHP------VLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDS---VTL 832
L+ +SL+ ++ C + + PK R D + +
Sbjct: 116 --KLFLVDRSLYGKEDNDTLVRCPLTDPEVTN-YSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 833 SWRPPKHDGG-----ARIKGYIVQKRK 854
+ +G V K
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEK 199
Score = 40.8 bits (95), Expect = 0.006
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 714 GEPPPEVTWTIDGKELKTDS----------VRTTVTSIGYHTIVNTVN-TKRSDSGTYHL 762
G P P + W + S + ++ G + ++++ + +GT
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 763 ELRNTSGRDEGSFTIV 778
+ N G+ F
Sbjct: 492 KAYNDVGKTSAYFNFA 507
Score = 40.0 bits (93), Expect = 0.008
Identities = 9/114 (7%), Positives = 23/114 (20%), Gaps = 3/114 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
K+ + + K V + + +R I
Sbjct: 113 DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 332 VNTVNTKRSDSGTYHLELRNTSG-RDEGSFTVTVLETISKTNTTTISSKNMMYL 384
+ + H + F + V ++S + +
Sbjct: 173 KSV--KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR 224
Score = 36.6 bits (84), Expect = 0.10
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
P I D+I++ G EI+ + P V WT + + ++ +
Sbjct: 34 PSPPSIHPGKSDLIVRVGD----EIRLLCTDPGFVKWTFEILDETNENKQNEWI------ 83
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
T + +++G Y ++ S V V +
Sbjct: 84 ---TEKAEATNTGKYTCTNKHGLSN---SIYVFVRD 113
Score = 34.6 bits (79), Expect = 0.45
Identities = 8/90 (8%), Positives = 18/90 (20%), Gaps = 3/90 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
K+ + + K V + + +R I
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIK 173
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + H + G+ S
Sbjct: 174 SV--KRAYHRLCLHCSVDQ-EGKSVLSEKF 200
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 111 bits (280), Expect = 9e-28
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 25/196 (12%)
Query: 2088 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2147
++ AP ++ + F C V + P ++W N +K +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR-EN 60
Query: 2148 DYTFVINRTKMEDRGEYIIRAENHYGYREE-VVFLNVQRKYDLPVIHYK-NHRRAN---- 2201
I + D G Y A N G E L V+ K P I + +
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK---PKITRPPINVKIIEGLK 117
Query: 2202 -----------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFN 2250
K V W+ + ++ ++ +V +L+I + ED+G Y C A N
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSALRENSRI---AVLESGSLRIHNVQKEDAGQYRCVAKN 174
Query: 2251 DEGESFSSCTLL-VQV 2265
G ++S L V+V
Sbjct: 175 SLGTAYSKLVKLEVEV 190
Score = 103 bits (258), Expect = 6e-25
Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 30/199 (15%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
++ AP ++ + F C V + P ++W N +K
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF--------DT 53
Query: 2065 DYTFYSSLRKLQIDRFSIQD-------------TSFDRR-----QAAPRFVIKPQSAFCY 2106
Y+ + + L I D + + + P+ P +
Sbjct: 54 RYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII 113
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
EG C + P+++W + L+++ + + + I+ + ED G+Y
Sbjct: 114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRC 170
Query: 2167 RAENHYGYRE-EVVFLNVQ 2184
A+N G ++V L V+
Sbjct: 171 VAKNSLGTAYSKLVKLEVE 189
Score = 65.5 bits (160), Expect = 8e-12
Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 39/136 (28%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV- 2263
+ W N IK + YS + L I + D G+Y C A N G + SC L
Sbjct: 39 ISWTRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
Query: 2264 ---------------------------------QVSWYKDGNPVSDDPATYQFTQIGQTY 2290
VSW K + + ++ + G
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-RIAVLESGS-- 154
Query: 2291 KMKILSTTLDDVGQYS 2306
++I + +D GQY
Sbjct: 155 -LRIHNVQKEDAGQYR 169
Score = 58.6 bits (142), Expect = 2e-09
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 54/220 (24%)
Query: 152 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK---KDGGSPISQY 208
+ E +C P QP ++ W ++ + ++ + ++ G ++
Sbjct: 20 LVEEVATFMCA-------VESYP----QPEIS-WTRNKILIKLFDTRYSIRENGQLLT-- 65
Query: 209 IIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
I + D +G + A N G ++ +
Sbjct: 66 --------------------ILSVEDSD--DGI---YCCTANNG--VGGAVESCGALQV- 97
Query: 269 PRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 328
+ PKI P ++ I G + +G P P V+W L+ +S R V G
Sbjct: 98 --KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-RIAVLESGS 154
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF---TVTVL 365
I N ++ D+G Y +N+ G V V
Sbjct: 155 LRI---HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 57.4 bits (139), Expect = 5e-09
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH-TI 331
AP I TPL+ + ++ P PE++WT + +K R ++ G TI
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 332 VNTVNTKRSDSGTYHLELRNTSG-RDEGSFTVTVLE 366
++ + SD G Y N G E + V
Sbjct: 67 ---LSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99
Score = 56.7 bits (137), Expect = 9e-09
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
+ A N G + G + V+ +P P ++ + G + M
Sbjct: 76 IYCCTANNGVG--GAVESCGALQVKMKPKITRPP-------INVKIIEGLKAVLPCTTMG 126
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--- 1509
P+P+ W DS + ++ R+ + S SL + N Q+ D GQYR KN G
Sbjct: 127 NPKPSVSWIKGDSALRENS-RIA---VLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 1510 TATLHVRVL 1518
L V V
Sbjct: 183 LVKLEVEVF 191
Score = 55.9 bits (135), Expect = 1e-08
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Query: 639 EVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDI 698
+ N + I + + + A N G + S + + + PKI P ++
Sbjct: 56 SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV-----KMKPKITRPPINV 110
Query: 699 IIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSG 758
I G + +G P P V+W L+ +S R V G I N ++ D+G
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-RIAVLESGSLRI---HNVQKEDAG 166
Query: 759 TYHLELRNTSGRDEGSFTIV 778
Y +N+ G +
Sbjct: 167 QYRCVAKNSLGTAYSKLVKL 186
Score = 55.1 bits (133), Expect = 3e-08
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH-TI 746
AP I TPL+ + ++ P PE++WT + +K R ++ G TI
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 747 VNTVNTKRSDSGTY 760
++ + SD G Y
Sbjct: 67 ---LSVEDSDDGIY 77
Score = 54.3 bits (131), Expect = 5e-08
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
Query: 1420 EEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLT 1479
E+ P PV+ + + + E + ++PQP W N +I DTR +
Sbjct: 2 EKLPKAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS--IR 58
Query: 1480 MNSASLVVKNSQRSDGGQYRLQLKNPAG-FDTATLHVRVLDRPH---PPENLHADEFAGD 1535
N L + + + SD G Y N G + ++V +P PP N+ E G
Sbjct: 59 ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIE--GL 116
Query: 1536 SLTL 1539
L
Sbjct: 117 KAVL 120
Score = 42.0 bits (99), Expect = 8e-04
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
++SW ++ + Y + GQ + ILS D G Y A +GG + +
Sbjct: 38 EISWTRNKILIKLFDTRYSIRENGQL--LTILSVEDSDDGIYCCTANNGVGGAVESCGAL 95
Query: 2320 VVKE 2323
VK
Sbjct: 96 QVKM 99
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 108 bits (272), Expect = 9e-28
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 1303 NEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIV 1362
+ GKP+ P+ V P P ++ V LSWRPP G I+ + V
Sbjct: 2 SSGSSGKPAIPSSSV-------LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTV 53
Query: 1363 QKRKKGGD-WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEE 1421
++G + N+ + TVGNL YTFRV+A NE G E S P+ V
Sbjct: 54 FFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGES---SQPIKVAT 110
Query: 1422 QPNKP 1426
QP
Sbjct: 111 QPESG 115
Score = 108 bits (271), Expect = 1e-27
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNY 1277
I S P AP S V L+W PPA G I + V G N
Sbjct: 11 IPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERALNTT 69
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+L TV +L+ Y FRV+A NE GPG+ S+P + + P +
Sbjct: 70 QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT-----QPESGPSS 118
Score = 100 bits (251), Expect = 8e-25
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 574 ETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPY 633
+ K + + P AP FV L+W+PP G I + + +G+
Sbjct: 5 SSGKPAIPSSS-VLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNR 62
Query: 634 WMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
+ + +L Y FRV+A NE GP E S +
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108
Score = 89.8 bits (223), Expect = 4e-21
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 222
P P V L W PP + G I + + + E+A
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERA 65
Query: 223 C-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+V +LK Y FRV+A N+ GPGE S+ T
Sbjct: 66 LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 86.3 bits (214), Expect = 7e-20
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 1505 PAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNS 1564
+G P P ++ + + L W PP + G I + V
Sbjct: 2 SSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGD 60
Query: 1565 TVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
+++ + + V NL + Y FRV+A N++G + + PIK + +
Sbjct: 61 NRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS---QPIKVATQPESGPS 117
Query: 1624 PG 1625
G
Sbjct: 118 SG 119
Score = 82.5 bits (204), Expect = 2e-18
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRS 1098
PS P+ + ++ LSW+PP + G I + V L++ S
Sbjct: 16 VLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERALNTTQPGS 73
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
V L+ Y FRV A N++G E
Sbjct: 74 LQLTVGNLKPEAMYTFRVVAYNEWGPGES 102
Score = 74.8 bits (184), Expect = 8e-16
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGT 130
+PS P + P ++ L WR P + G +I + V R +
Sbjct: 17 LPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERALNTTQPGSL 74
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLP 158
NL Y FRV A N+ G
Sbjct: 75 QLTVGNLKPEAMYTFRVVAYNEWGPGES 102
Score = 70.9 bits (174), Expect = 2e-14
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 475 GASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGT 534
+ +P P PS P + V+ +LSWR P + G I + +
Sbjct: 5 SSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNR 62
Query: 535 WS--DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGES 570
+ SL V L Y FRV A N G
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPG 100
Score = 64.4 bits (157), Expect = 3e-12
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 872
P P ++ V LSWRPP G I+ + V ++G + N+ +
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 873 TL 874
T+
Sbjct: 77 TV 78
Score = 55.9 bits (135), Expect = 3e-09
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
+P AP V + + L W P G IQ + V D++
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERA 65
Query: 1670 ASMAHIPDTSL 1680
+ L
Sbjct: 66 LNTTQPGSLQL 76
Score = 55.5 bits (134), Expect = 4e-09
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----- 955
+ + G A+N P TV L Y FRV A N G E
Sbjct: 50 TFTVFFS--REGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIK 107
Query: 956 ITTKEPVV 963
+ T+
Sbjct: 108 VATQPESG 115
Score = 46.6 bits (111), Expect = 6e-06
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP-- 485
+ + + G + + + P TV L Y FR+ N +G E P+
Sbjct: 51 FTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Query: 486 DKPSPP 491
S P
Sbjct: 111 QPESGP 116
Score = 45.5 bits (108), Expect = 2e-05
Identities = 14/48 (29%), Positives = 16/48 (33%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
D R N V +L Y FRV A N G + S K
Sbjct: 60 DNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIK 107
Score = 43.9 bits (104), Expect = 5e-05
Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 1131 DNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+P P V + L W P + IQ + V F
Sbjct: 6 SGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPP-AEAKGNIQTFTVFFSREGD 60
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle
cytokine, CY receptor complex, extracellular complex;
HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 117 bits (295), Expect = 9e-28
Identities = 46/395 (11%), Positives = 97/395 (24%), Gaps = 94/395 (23%)
Query: 2000 QDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL--KQSVKF 2057
+D R + V + + S+ V A + W + L +
Sbjct: 38 EDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL 97
Query: 2058 MKRYAGDDYTFYSSLRKLQIDRFSIQDT----------------SFD-RRQAAPRFVIKP 2100
R + I + + F + + ++
Sbjct: 98 QNRGVV----------SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Query: 2101 QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMED 2160
E Q C ++ P + W + + + + + +
Sbjct: 148 PYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE----LF 202
Query: 2161 RGEYIIRAENHYGYREEVVFLNVQR---KYDLPVIHYKNHRRAN----------KYDVIW 2207
+ A N G +F + LP + K + + W
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTW 262
Query: 2208 LHNNKEIKPSNDFAYS------SVAHVHTLKIAEIFPEDSGVYTCEAFN----------- 2250
NK ++ N F S ++ + ++ + D+G YTC +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIV 322
Query: 2251 ----------------DEGESFS-SC----TLLVQVSWYKDGNPVSDDPATYQFTQIGQT 2289
D+ E F S ++ +W + +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNG 377
Query: 2290 YKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLNV 2320
Y + G+Y A+ F+LN+
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 115 bits (289), Expect = 6e-27
Identities = 34/297 (11%), Positives = 75/297 (25%), Gaps = 57/297 (19%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ + ++ E Q C ++ P + W + + + ++
Sbjct: 138 RNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCK--------EESP 188
Query: 2068 FYSSLRKLQIDRFSIQD-------------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFT 2114
+ + D T F G+ +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248
Query: 2115 CRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDYTFV------INRTKMEDRGEYIIR 2167
C+ + + LTW N+ L++ F + T + ++ D G Y
Sbjct: 249 CKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
Query: 2168 AENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD------------------VIWLH 2209
+ H + + + K I+ N + D W
Sbjct: 309 SSKHPS---QSALVTIVEK---GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362
Query: 2210 NNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
+ K + +++ G Y A ND+ + TL ++
Sbjct: 363 SRKSFPCEQKGLDNG----YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 79.3 bits (195), Expect = 4e-15
Identities = 34/274 (12%), Positives = 73/274 (26%), Gaps = 40/274 (14%)
Query: 1268 GGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPD 1327
+ + L E + R A NE G + + + +
Sbjct: 177 DSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELG--RECTRLFTIDLNQTPQTTL 234
Query: 1328 PPEAPKVDRITKDSVTL-------------SWRPPKHDGGARIKGYIVQKRKKGGDWVDA 1374
P KV + + + +W + + A + +
Sbjct: 235 PQLFLKVG----EPLWIRCKAVHVNHGFGLTW---ELENKA-----LEEGNYFEMSTYST 282
Query: 1375 NSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVR 1434
N + V +++ + + + QS V + E+ + +
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVEKG--FINATNSSE 334
Query: 1435 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1494
D + E+F V F A+PQ W + + N S+ + +
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD-----NGYSISKFCNHKHQ 389
Query: 1495 GGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLH 1528
G+Y +N T + + + H
Sbjct: 390 PGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHHH 423
Score = 65.5 bits (159), Expect = 9e-11
Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 13/156 (8%)
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGED 1443
H + S G+ ++ +++ + + V E + V
Sbjct: 17 HKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAA-----------AVEVDVSAS 65
Query: 1444 FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK 1503
++ V A + W S ++ S+V+ + G+Y L ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPH--FDLQNRGVVSMVILKMTETQAGEYLLFIQ 123
Query: 1504 NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+ A T V + + + L
Sbjct: 124 SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL 159
Score = 62.0 bits (150), Expect = 1e-09
Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 40/216 (18%)
Query: 152 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 211
K+GE L + C++ +T W ++ LE + ++ +I
Sbjct: 240 KVGEPLWIRCKAV------HVNH----GFGLT-WELENKALEEGNYFEMSTYSTNRTMIR 288
Query: 212 KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 271
I+ A +++ + D G + + A + K
Sbjct: 289 ------------ILFAFVSSVARND--TGY---YTCSSSKHPS----QSALVTIVEKGFI 327
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
A +D I + ++F P TWT K GY
Sbjct: 328 NATN---SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF---PCEQKGLDNGYSIS 381
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
+ G Y N + FT+ +
Sbjct: 382 KF--CNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 60.5 bits (146), Expect = 3e-09
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Query: 263 APVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT 322
+ C R + + + + +++ W L
Sbjct: 38 EDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQ--PHF 95
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
+ + + +G Y L +++ + FTV++ T
Sbjct: 96 DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Score = 59.7 bits (144), Expect = 6e-09
Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 22/127 (17%)
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD-------- 2204
N + + Y + +E+ L Q ++ +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDL---GCALRPQSS---GTVYEAAAVEVDVSASITLQVLV 72
Query: 2205 -------VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+W+ + + V ++ I ++ +G Y ++
Sbjct: 73 DAPGNISCLWVFKHSSL-NCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 2258 SCTLLVQ 2264
T+ ++
Sbjct: 132 LFTVSIR 138
Score = 55.5 bits (133), Expect = 1e-07
Identities = 7/91 (7%), Positives = 23/91 (25%), Gaps = 2/91 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+ + + + +++ W L +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQ--PHFDLQNRGVVSM 105
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + +G Y L +++ + FT+
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 53.9 bits (129), Expect = 4e-07
Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 25/198 (12%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI-GEPP 717
+ R A NE G E + I L +T L + +K G+ L + + +
Sbjct: 205 DIRCCARNELG-RECTRLFTID------LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 718 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV-----NTKRSDSGTYHLELRNTSGR-- 770
+TW ++ K L+ + T T++ + + R+D+G Y +
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Query: 771 -----DEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRI 825
++G + + R P + + P +
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEF--CFSVRFKAYPQIRCTWTF--SRKSFPCEQKG 373
Query: 826 TKDSVTLS-WRPPKHDGG 842
+ ++S + KH G
Sbjct: 374 LDNGYSISKFCNHKHQPG 391
Score = 50.4 bits (120), Expect = 5e-06
Identities = 17/132 (12%), Positives = 30/132 (22%), Gaps = 16/132 (12%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPL--KDIIIKAGKIL 706
+ + + + + S + I +D I +
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQSALVTIVE---------KGFINATNSSEDYEIDQYEEF 344
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
++F P TWT K GY + G Y N
Sbjct: 345 CFSVRFKAYPQIRCTWTFSRKSF---PCEQKGLDNGYSISKF--CNHKHQPGEYIFHAEN 399
Query: 767 TSGRDEGSFTIV 778
+ FT+
Sbjct: 400 DDAQFTKMFTLN 411
Score = 39.7 bits (92), Expect = 0.011
Identities = 26/249 (10%), Positives = 51/249 (20%), Gaps = 60/249 (24%)
Query: 128 SGTYTRAENLIEGHDYNFRVKAVNKI----------GESLPLVCQSPITAKDPFGRPDRP 177
S +Y E R ++ + S+ L
Sbjct: 27 SSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVD-------APG--- 76
Query: 178 GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL 237
+ W H L P + +I K +
Sbjct: 77 -NISCL-WVFKHSSLNCQPHFDLQNRGVVSMVILK------------------------M 110
Query: 238 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQF 297
E + E+ + ++ + + + T + K +
Sbjct: 111 TETQAGEYLLFIQSEAT-------NYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCIS 163
Query: 298 IGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 356
P P V W + + ++ V + RN GR+
Sbjct: 164 ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL------HELFGTDIRCCARNELGRE 217
Query: 357 EGSFTVTVL 365
L
Sbjct: 218 CTRLFTIDL 226
Score = 38.1 bits (88), Expect = 0.029
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 14/131 (10%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I +T+ Q E+ + +EA + I+ + T + K +
Sbjct: 107 ILKMTETQAGEYLLFIQSEAT-------NYTILFTVSIRNTLLYTLRRPYFRKMENQDAL 159
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
P P V W + + ++ V + RN
Sbjct: 160 VCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL------HELFGTDIRCCARNE 213
Query: 768 SGRDEGSFTIV 778
GR+ +
Sbjct: 214 LGRECTRLFTI 224
Score = 37.7 bits (87), Expect = 0.045
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 37/132 (28%)
Query: 2222 YSSVAHVHTLKIAEIFPEDSGVYTCEAFN------------------------DEGESFS 2257
V H K + S Y + + D S +
Sbjct: 10 IKCVLINH--KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASIT 67
Query: 2258 -SCTL----LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQ 2308
+ + W + ++ P + + M IL T G+Y ++
Sbjct: 68 LQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSE 125
Query: 2309 MGGIIAAFSLNV 2320
F++++
Sbjct: 126 ATNYTILFTVSI 137
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 118 bits (296), Expect = 1e-27
Identities = 56/461 (12%), Positives = 123/461 (26%), Gaps = 47/461 (10%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFT 1285
D + T + W P + ++ R + TTN+
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFH-----SCHPLETTNVKIP 58
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVD-RITKDSVTL 1344
G +E + +N + K+ P+ PE + S+ L
Sbjct: 59 ALSP---GDHEVTINYLNGFQ------SKFTLNEKDVSLIPETPEILDLSADFFTSSLLL 109
Query: 1345 SWRPPK---HDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLS-------EGEE 1394
W V + + + + TV + + +
Sbjct: 110 KWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCAT 169
Query: 1395 YTFRV-IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGV-RDITVKAGEDFSIHVPFMA 1452
++ + ++ S + S ++ + + +D V AG + +I
Sbjct: 170 HSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTIC----- 224
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
+ + + + ++ + + D
Sbjct: 225 ------CMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYG 278
Query: 1513 LHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNG--GSEITNYVVEKKDYNSTVWTKV 1570
V P P+ L + + W P R G G T Y + + +
Sbjct: 279 TVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR 338
Query: 1571 SSYVT--TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPK 1628
+T T + V+ + F + N G ++ A+ I+ P P + K
Sbjct: 339 IEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINV----TERVAPHDPTSLK 394
Query: 1629 GVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
D ++ W P + + +E + K ++
Sbjct: 395 VKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVR 434
Score = 92.3 bits (228), Expect = 4e-19
Identities = 69/518 (13%), Positives = 139/518 (26%), Gaps = 57/518 (11%)
Query: 173 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 232
+ D T D W P + I+ + +C P T
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDR------FHSCH-PLETTNV 55
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILN 292
+P L G+ +E + +N + K + P+ L L
Sbjct: 56 KIPALSPGD-HEVTINYLNGFQS------KFTLNEKDVSLIPETPEILDLSADFFTSSLL 108
Query: 293 VE---IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLEL 349
++ P TW I + V +T+++ +T + + T L L
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVL---LNTMLSGKDTVQHWNWTSDLPL 165
Query: 350 RNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLH 409
+ + + + S + S + R + P + ++
Sbjct: 166 QCATHSVSIRWHIDS-PHFSGYKEWSDWSPLKNISWIRNTETNVFPQ--DKVVLAGSNM- 221
Query: 410 PVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIR 469
+ C + + G + + + + + I
Sbjct: 222 -TICCMSPTKVLS-----------GQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNII 269
Query: 470 TENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKL--SWRVPVDDG--GAPILHYII 525
PP+ P ++S T + ++ SW G G Y +
Sbjct: 270 FITDDDVYGT----VVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 526 EKMDISRGTWS---DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ + + + V ++ + F + N +G++ + +
Sbjct: 326 FESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQA----QSAVVINV 381
Query: 583 NEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEV-- 640
E P P VKD V +W P N + I+ + + + +
Sbjct: 382 TERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRG 440
Query: 641 -PANKTDVKIPDLTKGQEYEFRVIA-VNEAGP-SEPSD 675
+ V + L Y FRV S SD
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSD 478
Score = 91.6 bits (226), Expect = 7e-19
Identities = 63/413 (15%), Positives = 110/413 (26%), Gaps = 32/413 (7%)
Query: 1014 EVTGYSPSSVSLAWNPPANHGG------RPITDKPSPPQGPLDVSDITPESCSLSW---K 1064
++ SP + N + ++ P P+ +D S L W
Sbjct: 56 KIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRG 115
Query: 1065 PPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLE-------TNRQYRFRVR 1117
L + V + L + + S V + +R
Sbjct: 116 SALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIR 175
Query: 1118 AE-NQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDT---NNATLMWDRPRTDGGSK 1173
+ S E + K + + D +N T+ T S
Sbjct: 176 WHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICC-MSPTKVLSG 234
Query: 1174 IQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPE 1233
G + + + ++ D + G + PPD P +
Sbjct: 235 QIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLS 294
Query: 1234 VTGYSPSSVSLAWNPPANHG--GRPITGYYVEKRERGGEWL--RANNYPTTNLNFTVHDL 1289
+ + +WNP G G T Y + + G + R V
Sbjct: 295 CETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMH 354
Query: 1290 REGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPP 1349
+ F + N G + +V ++ P P + KV I VT SW P
Sbjct: 355 PGQEIHNFTLTGRNPLG----QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP 410
Query: 1350 KHDGGARIKGYIVQKRKKGGDWVDANSVPV---PNPVHTVGNLSEGEEYTFRV 1399
+ + I + V ++ V L+ YTFRV
Sbjct: 411 GNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463
Score = 81.2 bits (199), Expect = 1e-15
Identities = 51/396 (12%), Positives = 104/396 (26%), Gaps = 51/396 (12%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
K + L + +W PL + + ++ + +
Sbjct: 3 KDDDDKD-LKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTN------- 54
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQI-VDWDTNNA 1159
+ L + + N + ++ K +P+ P + D+ T++
Sbjct: 55 VKIPALSPGD-HEVTINYLNGFQSKF------TLNEKDVSLIPETPEILDLSADFFTSSL 107
Query: 1160 TLMWDRPR--TDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGW-WLQDSRIQ 1216
L W+ S ++++ L T W W D +Q
Sbjct: 108 LLKWNDRGSALPHPSNAT-WEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQ 166
Query: 1217 G-----RIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANH---------GGRPITGYYV 1262
I+ D P E + +SP + G +T +
Sbjct: 167 CATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCM 226
Query: 1263 EKRERGGEWLRANNYPTTNLN-----FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
+ + P +L + ++ +I I +
Sbjct: 227 SPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYP 286
Query: 1318 QCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDG--GARIKGYIVQKRKKGGDWVDAN 1375
PD P+ + + SW P + G G R Y + + G V
Sbjct: 287 --------PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR 338
Query: 1376 SVPVPNPVH--TVGNLSEGEEYTFRVIAVNEAGNSE 1409
+ N + V E + F + N G ++
Sbjct: 339 IEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ 374
Score = 75.4 bits (184), Expect = 1e-13
Identities = 73/537 (13%), Positives = 148/537 (27%), Gaps = 89/537 (16%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR-KKGGDWVDAN-SVPVPNP 870
K D + K +W P +K ++ R N +P +P
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPALSP 62
Query: 871 VHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHAT 930
++I YL+ F ++ + + ++D++ P + +S ++
Sbjct: 63 GDHEVTINYLNGF---------------QSKFTLNEKDVS-LIPETPEILDLSADFFTSS 106
Query: 931 V--------PRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLK 982
+ L + + ++ LQ + + W L
Sbjct: 107 LLLKWNDRGSALPHPSNATWEIKV--LQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLP 164
Query: 983 EICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKP 1042
C H I + +S W+P N T+
Sbjct: 165 LQCATHSVSI-----------------RWHIDSPHFSGYKEWSDWSPLKNISWIRNTE-- 205
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYD 1102
+++ P+ + GS +T + + +G +
Sbjct: 206 ---------TNVFPQD-------KVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQ 249
Query: 1103 VFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLM 1162
+ N +++ + A +P PD P + D
Sbjct: 250 TVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYP---PDVPQKLSCETHDLKEIICS 306
Query: 1163 WDRPRTDG--GSKIQGYKVEFR-STRTATDC-------GLGYQQCHADVGQTPHGWWLQD 1212
W+ R G G + Y + S ++A GQ H + L
Sbjct: 307 WNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTG 366
Query: 1213 SRIQGRIQSP--FDPPD-----APSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKR 1265
G+ QS + + P+ +V + + V+ +W P N + +E
Sbjct: 367 RNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL-CQIEIC 425
Query: 1266 ERGGEWLRAN----NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQ 1318
+ + N + + V L Y FRV + K S+ +D +
Sbjct: 426 KANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKR 481
Score = 70.4 bits (171), Expect = 4e-12
Identities = 64/489 (13%), Positives = 134/489 (27%), Gaps = 66/489 (13%)
Query: 1143 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVG 1202
D + + W P ++ ++ R C + + +
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFH----SC-HPLETTNVKIP 58
Query: 1203 QTPHGWWLQDSRIQGRIQSPFDP--------PDAPSQPEVTGYSP-SSVSLAWNPPANHG 1253
G QS F P+ P +++ SS+ L WN +
Sbjct: 59 ALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSAL 118
Query: 1254 GRPITGYY---VEKRERGGEWLRANNYPTTNLNFTVHDLR-------EGGKYEFRVIAIN 1303
P + V + R + TV + + +
Sbjct: 119 PHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHI 178
Query: 1304 EAGPGKPSKP---TDIVQCKEQKRKPDPPEAPKVDRITK--DSVTLSWRPPKHDGGARIK 1358
++ K ++ R + P+ D++ ++T+ P +I
Sbjct: 179 DSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQ-DKVVLAGSNMTICCMSPTKVLSGQI- 236
Query: 1359 GYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVI 1418
G + + N+ E +I + + +G
Sbjct: 237 ---------GNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYP- 286
Query: 1419 VEEQPNKPVMDLSGVRDITVKAGEDFSIHV-------PFMAFPQPAAFWFANDSIIDDSD 1471
P+ P + ++ + + I + P+ + +
Sbjct: 287 ----PDVP-------QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAV 335
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDR--PHPPENLHA 1529
+ LT + L V+ + + L +NP G + + + V +R PH P +L
Sbjct: 336 FHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKV 395
Query: 1530 DEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF----VRVRNLA 1585
+ +T W P + + +E NS + ++ V V L
Sbjct: 396 KDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLN 454
Query: 1586 IGSTYEFRV 1594
+ Y FRV
Sbjct: 455 PYTAYTFRV 463
Score = 68.4 bits (166), Expect = 1e-11
Identities = 39/209 (18%), Positives = 60/209 (28%), Gaps = 21/209 (10%)
Query: 71 LHIPSPPEGPLKPSNITKSSCNL--EWRAPRDDG--GTDILHYVVEKMDMETGRW--VPM 124
+ PP+ P K S T + W R G G Y + +
Sbjct: 281 VFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIE 340
Query: 125 GDVSGTYTRAENLIEGHD-YNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPT 181
G + TY + G + +NF + N +G +S ++ + A P
Sbjct: 341 GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHD------PTSLK 394
Query: 182 VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI----VPANITATSVPDL 237
V D V W P + IE E + +V L
Sbjct: 395 VKDINSTVVTFSWYLPGNFTKINL-LCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKL 453
Query: 238 KEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
Y FRV +K + S+ S
Sbjct: 454 NPYTAYTFRVRCSSKTF-WKWSRWSDEKR 481
Score = 62.3 bits (150), Expect = 1e-09
Identities = 66/520 (12%), Positives = 128/520 (24%), Gaps = 117/520 (22%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFY 546
K + L+ + +W P+ + I+ S
Sbjct: 3 KDDDDKD-LKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTN------V 55
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTV-KDWGEDFVD 605
+P L ++ + +N TL ++ P+ PE + D+ +
Sbjct: 56 KIPALSP-GDHEVTINYLNGFQSKFTLNEKDVSLI------PETPEILDLSADFFTSSLL 108
Query: 606 LAWKPP--LNDGGSPIT-DYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQ------ 656
L W S T + + + + P + L + D
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCA 168
Query: 657 EYEFRVIAVNEA----GPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQF 712
+ + ++ G E SD S + P +D ++ AG N+ I
Sbjct: 169 THSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFP-QDKVVLAGS--NMTICC 225
Query: 713 IGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
+ T + + + I T + + N
Sbjct: 226 M---------------SPTKVLSGQIGNTLRPLI-------HLYGQTVAIHILNIPV--- 260
Query: 773 GSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTL 832
++ S ++ + + PD P+ + +
Sbjct: 261 ---------------SENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIIC 305
Query: 833 SWRPPKHDG--GARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFL------ 884
SW P + G G R Y + + G V + N + L + Q +
Sbjct: 306 SWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLT 365
Query: 885 -----------------------------AEEKKHGKLLL--------AKVENGYVIEKR 907
++ + K+ IE
Sbjct: 366 GRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEIC 425
Query: 908 DLTHGGGWVPA-VNHVSPYDHHATVPRLLEGTTYEFRVRA 946
A + +H V +L T Y FRVR
Sbjct: 426 KANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRC 465
Score = 55.7 bits (133), Expect = 1e-07
Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 46/363 (12%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 1384
K D + K +W P +K ++ R ++ +V +P
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPALSP 62
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
++ + +N + + ++ P P + + A
Sbjct: 63 G--------DHEVTINYLNGFQSKFTLNEKDVSLI---PETP-------EILDLSADFFT 104
Query: 1445 SIH-----VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYR 1499
S A P P+ + ++ + T + +N+ L K++ +
Sbjct: 105 SSLLLKWNDRGSALPHPSNATWEIK-VLQNPRTEPVALVLLNT-MLSGKDTVQHWNWTSD 162
Query: 1500 LQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTP---PRDN---GGSEIT 1553
L L+ + H+ E S P+D GS +T
Sbjct: 163 LPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMT 222
Query: 1554 NYVVEKKD-----YNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
+ +T+ + Y T + + N+ + ++ + +
Sbjct: 223 ICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVF 282
Query: 1609 IDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDG--GSPIQRYIVEKRLISDDK 1666
P P I W+ R G G Y + + +
Sbjct: 283 AG--------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA 334
Query: 1667 WIK 1669
Sbjct: 335 VFH 337
Score = 50.3 bits (119), Expect = 6e-06
Identities = 76/562 (13%), Positives = 144/562 (25%), Gaps = 129/562 (22%)
Query: 587 EPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTD 646
+ D + D W PL + D I+ + P T+
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCH--------PLETTN 54
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
VKIP L+ G ++E + +N + D+ L P+ L L
Sbjct: 55 VKIPALSPG-DHEVTINYLNGFQSKFTLNEKDVS------LIPETPEILDLSADFFTSSL 107
Query: 707 NVE---IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
++ P TW I + V +T+++ +T + + T L
Sbjct: 108 LLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVL---LNTMLSGKDTVQHWNWTSDLP 164
Query: 764 LRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVD 823
L+ + + W+ + P+ R + P+ D
Sbjct: 165 LQCAT-----------HSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQ-D 212
Query: 824 RITK--DSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGY-- 879
++ ++T+ P +I G + +L+I
Sbjct: 213 KVVLAGSNMTICCMSPTKVLSGQI----------GNTLRPLIHLYGQTVAIHILNIPVSE 262
Query: 880 LSQFLAEEKKHGKLLLAKVENGYVIEK----RDLTHGGG-----WVPAV--NHVSPYDHH 928
S + V GY + TH W P V P +
Sbjct: 263 NSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTE 322
Query: 929 ATVPRLLEGTTYEFRVRAENLQGLSEPITTKEP--------VVAKNQYGKELDKWTNYDV 980
T+ + G + F P + +N G+
Sbjct: 323 YTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVV---- 378
Query: 981 LKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITD 1040
I++ + V P P+ +V + + V+ +W P N +
Sbjct: 379 ------INVTERV------------APHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL- 419
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
+E ++ + + ++ +
Sbjct: 420 ------------------------------------CQIEICKANSKKEVRNATIRGAED 443
Query: 1101 ----YDVFGLETNRQYRFRVRA 1118
V L Y FRVR
Sbjct: 444 STYHVAVDKLNPYTAYTFRVRC 465
Score = 47.3 bits (111), Expect = 5e-05
Identities = 59/465 (12%), Positives = 121/465 (26%), Gaps = 76/465 (16%)
Query: 439 DNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLD-PLFPDKPSPPEGPLEV 497
D + + + L+ G + I N + + L+ P PE
Sbjct: 42 DRFHSCHPLE-TTNVKIPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLS 99
Query: 498 SNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEY 557
++ S L W P K + + + + ++ K+
Sbjct: 100 ADFFTSSLLLKWNDRGSALPHPSNATWEIK--VLQ----NPRTEPVALVLLNTMLSGKDT 153
Query: 558 LFRVKAVNSIGESDTLETTKTTVA-RNEFDEPDAPEKPTVKDW---------GEDFVDLA 607
+ + + L+ +V+ R D P DW ++
Sbjct: 154 VQHWNWTSDL----PLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVF 209
Query: 608 WKPPLNDGGSPITDYIIQKKEKGNPYWMNALE----VPANKTDVKIPDLTKGQEYEFRVI 663
+ + GS +T + + + N L + + I ++ + +I
Sbjct: 210 PQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNII 269
Query: 664 AVNEAG-------PSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEP 716
+ + P D + C+ L K+II +
Sbjct: 270 FITDDDVYGTVVFAGYPPDVPQKLSCETHDL--------KEIICSWNPGRITGLV----G 317
Query: 717 PPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS-DSGTYHLELRNTSGRDEGSF 775
P +T+ +V + + T V + + L RN G+ + +
Sbjct: 318 PRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAV 377
Query: 776 TIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWR 835
I P P + KV I VT SW
Sbjct: 378 VINVTE-----------------------------RVAPHDPTSLKVKDINSTVVTFSWY 408
Query: 836 PPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYL 880
P + + I + V ++ +++ L
Sbjct: 409 LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKL 453
Score = 32.2 bits (72), Expect = 2.3
Identities = 53/415 (12%), Positives = 118/415 (28%), Gaps = 57/415 (13%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMGDVSGT 130
IP PE ++ SS L+W ++ + ++ + V + ++
Sbjct: 89 IPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNAT-WEIKVLQNPRTEPVALVLLNTM 147
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQS-PITAKDPFGRPDRPGQPTVTDW---- 185
+ + + LPL C + ++ + P G +DW
Sbjct: 148 LSGKDTVQHW-----------NWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLK 196
Query: 186 ---GKDHVDLEWTPPKK--DGGSPIS-QYIIEKKPKYGPWEKACI----VPANITATSVP 235
+ + P K GS ++ + K G + A +
Sbjct: 197 NISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHIL 256
Query: 236 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEI 295
++ E +I + + P+ ++ + LK+II +
Sbjct: 257 NIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHD-LKEIICSWNPGRITGL 315
Query: 296 QFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS-DSGTYHLELRNTSG 354
P +T+ +V + + T V + + L RN G
Sbjct: 316 V----GPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLG 371
Query: 355 RDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHC 414
+ + + + V E ++ + T++ K+ I + W +
Sbjct: 372 QAQSAVVINVTERVAPHDPTSLKVKD------------INSTVVTFSWYL--------PG 411
Query: 415 RGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIR 469
+ ++ + ++ + N V L Y FR+R
Sbjct: 412 NFTKINLLCQI--EICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 111 bits (279), Expect = 2e-27
Identities = 30/203 (14%), Positives = 53/203 (26%), Gaps = 47/203 (23%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ + P+S GQ VK CR WF N+E+ G+
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN---------GNTSE 66
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYRE-EVVFLNVQRKYDLPVIHYKNHRRANKY------ 2203
+ N ++D G Y+ R N++ + + L+V + +
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 2204 ----------------------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDS 2241
W N + + + E
Sbjct: 127 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQ 177
Query: 2242 GVYTCEAFNDEGESFSSCTLLVQ 2264
G Y C +ND S ++
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIII 200
Score = 101 bits (254), Expect = 4e-24
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 28/196 (14%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS---------VKF- 2057
+ + P+S GQ VK CR WF N+E+ V
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK 75
Query: 2058 -MKRY-------AGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQ 2109
Y +++ +S L + S Q + ++ + ++P S G
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLD-VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGS 134
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
++ C + P WF N L +++ +E +G Y
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHVY 185
Query: 2170 NHYGYREEVVFLNVQR 2185
N ++ +
Sbjct: 186 NDRDSQDSKKVEIIID 201
Score = 55.3 bits (133), Expect = 3e-08
Identities = 21/151 (13%), Positives = 33/151 (21%), Gaps = 68/151 (45%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV- 2263
W NKEI N L + +D+G Y C N+ FS + L
Sbjct: 50 YQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Query: 2264 ------------------------------------------------QVSWYKDGNPVS 2275
W+K+ P++
Sbjct: 101 CDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160
Query: 2276 DDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ + L+ G Y
Sbjct: 161 HETKKL----------YMVPYVDLEHQGTYW 181
Score = 50.7 bits (121), Expect = 1e-06
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 1984 SQYSSLRKLQI--DRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT 2041
++S +L + S Q + ++ + ++P S G ++ C + P
Sbjct: 90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH 149
Query: 2042 LTWFHNNQELKQS 2054
WF N L
Sbjct: 150 YQWFKNELPLTHE 162
Score = 49.1 bits (117), Expect = 5e-06
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
KI + + AG+ + + + G P + W KE+ + + +
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN------ 70
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLETISKTNTTTISSKNMMYLFERELL 390
D+G Y + N + + V + + E
Sbjct: 71 ----AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 391 NLIVP 395
+ +
Sbjct: 127 SQKLM 131
Score = 48.3 bits (115), Expect = 7e-06
Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 26/165 (15%)
Query: 630 GNP----YWM-NALEVP-ANKTDVKIPDLTKGQEYEFRVIAVNEAGPS----------EP 673
G+P W E+P N +++ + + N +
Sbjct: 44 GHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI 103
Query: 674 SDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS 733
++ + +I + G L ++ +G P P W + L ++
Sbjct: 104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163
Query: 734 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + + GTY + N + +
Sbjct: 164 KKL-------YMV---PYVDLEHQGTYWCHVYNDRDSQDSKKVEI 198
Score = 47.6 bits (113), Expect = 2e-05
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 257 EPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT 316
+ ++ +I + G L ++ +G P P W + L
Sbjct: 102 DIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH 161
Query: 317 DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS-FTVTVLE 366
++ + + + GTY + N + + + E
Sbjct: 162 ETKKL-------YMV---PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202
Score = 44.5 bits (105), Expect = 2e-04
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
KI + + AG+ + + + G P + W KE+ + + +
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN------- 70
Query: 748 NTVNTKRSDSGTYHLELRNTSGRD 771
D+G Y + N +
Sbjct: 71 ---AVHVKDAGFYVCRVNNNFTFE 91
Score = 44.1 bits (104), Expect = 2e-04
Identities = 23/146 (15%), Positives = 36/146 (24%), Gaps = 42/146 (28%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
G I P V AG+ + P WF + I +
Sbjct: 16 PRGSKITV-NP----------ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-- 62
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLDRPH------- 1522
N++ L+ D G Y ++ N F + L V +
Sbjct: 63 --------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 1523 ---------PPENLHADEFAGDSLTL 1539
P + G +L L
Sbjct: 115 SESKLQICVEPTSQKLMP--GSTLVL 138
Score = 42.6 bits (100), Expect = 7e-04
Identities = 19/148 (12%), Positives = 36/148 (24%), Gaps = 26/148 (17%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGV-----------RDITVKAGEDF 1444
+ N Q + V + P + GV + G
Sbjct: 79 FYVCRVNNNFT--FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 1445 SIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN 1504
+ + P P WF N+ + ++ +V G Y + N
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPLTHETKKL----------YMVPYVDLEHQGTYWCHVYN 186
Query: 1505 PAGF---DTATLHVRVLDRPHPPENLHA 1529
+ + L+ P+N
Sbjct: 187 DRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
Score = 31.8 bits (72), Expect = 2.2
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
Q W+K + + G T ++ + + D G Y
Sbjct: 49 QYQWFKMNKEIPN----------GNTSELIFNAVHVKDAGFYV 81
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 116 bits (291), Expect = 2e-27
Identities = 56/406 (13%), Positives = 91/406 (22%), Gaps = 112/406 (27%)
Query: 2008 QAAPRFVIKPQSA-FCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
Q P F+ +P + + C+ P + W ++ V
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV--------PGL 52
Query: 2067 TFYSSLRKLQIDRFSIQDTSFD------------------------RRQAAPRFVIKPQS 2102
SS KL F +D + R A +
Sbjct: 53 RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 112
Query: 2103 AFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELK-QSVKFMKRYA-GDDYTFVINRTK 2157
G S C + +A ++W + +E ++ +Y I
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172
Query: 2158 MED-RGEYIIRAENHYGYRE------EVVFLNVQRKYDLPVIHYKNHRRANKY------- 2203
ED Y R ++ + + P +
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL 232
Query: 2204 ----------DVIWLHNNKEIKPSNDFAYSSVAHV--HTLKIAEIFPEDSGVYTCEAFND 2251
W + + TL I + EDSG Y C N
Sbjct: 233 LCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 292
Query: 2252 EGESFSSCTLLVQ---------------------------------VSWYKDGNPVSDDP 2278
G L V VSW KDG +
Sbjct: 293 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 2279 ATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
+ ++I S +D G Y A+ L +
Sbjct: 353 SV-----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 112 bits (281), Expect = 4e-26
Identities = 50/304 (16%), Positives = 81/304 (26%), Gaps = 61/304 (20%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELK-QSVKFMKRY 2061
R A + G S C + +A ++W + +E ++ +Y
Sbjct: 99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158
Query: 2062 -----------------AGDDYTFYSSLRKLQIDRFS-------IQDTSFDRRQAAPRFV 2097
Y + R R S I + P V
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218
Query: 2098 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL--KQSVKFMKRYAGDDYTFVINR 2155
KP ++ C P+ W+ + KQ+V R T +I
Sbjct: 219 QKPLEL--MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 276
Query: 2156 TKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYK--NHRRANKYDVI------- 2206
+ED G+Y+ N G L V +
Sbjct: 277 AVVEDSGKYLCVVNNSVGGESVETVLTVTAP---LSAKIDPPTQTVDFGRPAVFTCQYTG 333
Query: 2207 -------WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSC 2259
W+ + K I S L+I + ED G+Y C ND + +S
Sbjct: 334 NPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASA 383
Query: 2260 TLLV 2263
L +
Sbjct: 384 ELKL 387
Score = 92.3 bits (229), Expect = 1e-19
Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 34/202 (16%)
Query: 1999 IQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
I + P V KP ++ C P+ W+ +
Sbjct: 203 ITEPISSSAPRTPALVQKPLEL--MVAHTISLLCPAQGFPAPSFRWYKFIEGTT-----R 255
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQ 2101
K+ + L I ++D+ S A I P
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 315
Query: 2102 SAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
+ G+ FTC+ T++W + + + S + I K ED+
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDK 365
Query: 2162 GEYIIRAENHYGYREEVVFLNV 2183
G Y N E L +
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
Score = 67.3 bits (164), Expect = 2e-11
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPN---KPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
+++ + + +V +P P + + + S+ P
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 1453 FPQPAAFWF-ANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
FP P+ W+ + ++ ++ S +L++K++ D G+Y + N G ++
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 1512 TLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
+ V P D G
Sbjct: 299 ETVLTVTAPLSAKIDPPTQTVDF--GRPAVF 327
Score = 52.2 bits (125), Expect = 1e-06
Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 36/248 (14%)
Query: 122 VPMGDVSGTYT-RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 180
V D +Y R ++ R+ ++ + + + + P +P
Sbjct: 171 VGPEDGYKSYQCRTKH---------RLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 181 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS----VPD 236
+ L G P + K + ++A ++ + S + D
Sbjct: 222 LELMVAHT-ISLLCPA----QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 276
Query: 237 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ 296
+ ++ + N G +T K + G+ Q
Sbjct: 277 AVVEDSGKYLCVVNNSVGG---ESVETVLTVT---APLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 297 FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 356
+ G P V+W DGK + I + + D G Y +RN
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSE--------SVLRIESVK---KEDKGMYQCFVRNDRESA 379
Query: 357 EGSFTVTV 364
E S + +
Sbjct: 380 EASAELKL 387
Score = 51.5 bits (123), Expect = 2e-06
Identities = 49/411 (11%), Positives = 100/411 (24%), Gaps = 93/411 (22%)
Query: 1147 GQPQI-VDWDTNNATLMWDRPR-----TDGGSKIQGYKVEFRSTRTATDCGLGYQQCHAD 1200
G P + W ++ T + D P +DG FR+ + C A
Sbjct: 30 GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP----PFRAEDYRQEVHAQVYACLA- 84
Query: 1201 VGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPE-VTGYSPSSVSLAWNPPANHGGRPITG 1259
+ G + + R + +S + P+ +
Sbjct: 85 --RNQFGSIIS-RDVHVRAVVA---QYYEADVNKEHVIRGNSAVIKCLIPS-FVADFVEV 137
Query: 1260 YYVEKRERGGEWLRANNYPTTNLNFTVHDLREG-------------GKYEFRVIAINEAG 1306
E N +P + L G Y + +
Sbjct: 138 VSWHTDEE------ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY--QCRTKHRLT 189
Query: 1307 PGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITK-----DSVTL------------SWRPP 1349
T + P P + + +++L W
Sbjct: 190 GETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY-- 247
Query: 1350 KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSE 1409
K G K +V + V + + + + + + N G
Sbjct: 248 KFIEGTTRKQAVVLNDR----------VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 1410 PGKQSGPVIVEEQPN---KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSI 1466
+ V + P TV G + P W +
Sbjct: 298 ---VETVLTVTAPLSAKIDP-------PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 347
Query: 1467 IDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
I S+ + L +++ ++ D G Y+ ++N A+ +++
Sbjct: 348 IGHSE-----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 50.7 bits (121), Expect = 3e-06
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 244 EFRVIAVNKGGPGEPSKASAP---VTCKPRFVAPKIKTPL-KDIIIKAGKILNVEIQFIG 299
++ ++ A+ +T AP+ + K + + +++ G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGR 355
P P W + V V+ + DSG Y + N+ G
Sbjct: 239 FPAPSFRWYKFIEGTTRKQ---AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 356 DEGSFTVTVLE 366
+ +TV
Sbjct: 296 ESVETVLTVTA 306
Score = 47.2 bits (112), Expect = 4e-05
Identities = 23/146 (15%), Positives = 33/146 (22%), Gaps = 24/146 (16%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
Q GPV ++E N I I P P W +D
Sbjct: 1 QKGPVFLKEPTN----------RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 50
Query: 1473 RVHKQLTMNSASLVVKN------SQRSDGGQYRLQLKNPAGFD---TATLHVRVLDRPH- 1522
+ + + LV Q Y +N G + V
Sbjct: 51 GLRQIS--SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEA 108
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNG 1548
H G+S + P
Sbjct: 109 DVNKEHVIR--GNSAVIKCLIPSFVA 132
Score = 44.5 bits (105), Expect = 3e-04
Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 34/235 (14%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
A N G + + V ++ K V G V + P + +
Sbjct: 84 ARNQFGSIISRDVHVRAVVAQYYEAD--VNKEHV-IRGNSAV-IKCLIP-SFVADFVEVV 138
Query: 623 IIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQ-----------EYEFRVIAVNEAGPS 671
E+ N + P + D K L G+ ++ +
Sbjct: 139 SWHTDEEENYF-------PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 191
Query: 672 E---PSDASDIIMCKQRFLAPKIKTPL-KDIIIKAGKILNVEIQFIGEPPPEVTWTIDGK 727
+ +I AP+ + K + + +++ G P P W +
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
Query: 728 ELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
V V+ + DSG Y + N+ G + +
Sbjct: 252 GTTRKQ---AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303
Score = 43.0 bits (101), Expect = 0.001
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
K + G+ Q+ G P V+W DGK + I
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------SVLRIE 358
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGS 774
+ + D G Y +RN E S
Sbjct: 359 SVK---KEDKGMYQCFVRNDRESAEAS 382
Score = 41.8 bits (98), Expect = 0.002
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 269 PRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSIG 327
P F +K P I +E + G P PE+ W DG + ++S G
Sbjct: 4 PVF----LKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 328 YHTIVNTV---NTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + Y RN G S V V
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVHV 98
Score = 41.1 bits (96), Expect = 0.004
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 688 APKI-KTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSIGYHT 745
P K P I +E + G P PE+ W DG + ++S G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 746 IVNTV---NTKRSDSGTYHLELRNTSGR 770
+ + Y RN G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGS 90
Score = 33.8 bits (77), Expect = 0.68
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 272 VAPKIKTPLKDIIIKAGK--ILNVEI-QFIGEPPPEVTWTIDGKELK----TDSVRTTVT 324
VA + + + G ++ I F+ + V+W D +E + V
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 325 SIGYHTIVNTVNTKRSDS-GTYHLELRNTSGRDE 357
G I D +Y ++ +
Sbjct: 162 PSGELHI---REVGPEDGYKSYQCRTKHRLTGET 192
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 114 bits (287), Expect = 2e-27
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 1643 KPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFG 1702
P D P + + + D IP L I E+IG G+FG
Sbjct: 8 HPMSDYDIPTTENLYFQGAMDGDDM------DIPWCDLN----------IKEKIGAGSFG 51
Query: 1703 VVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHPKLINLHDAFEDDDEM 1760
VHR G+ A K + + + +E+ IM +L HP ++ A +
Sbjct: 52 TVHRAEWH--GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNL 109
Query: 1761 VLIFEFLSGGELFE--RITAPDYKMSEAEVINYMRQVCEAVKHMHEKN--IIHLDVKPEN 1816
++ E+LS G L+ + ++ E ++ V + + ++H +N I+H ++K N
Sbjct: 110 SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPN 169
Query: 1817 IMCQTRNSTNVKMIDFGLATKLDPNEVVKIS-TGTAEFAAPEIVEREPVGFYTDMWAVGV 1875
++ + VK+ DFGL+ + S GT E+ APE++ EP +D+++ GV
Sbjct: 170 LLVDKKY--TVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGV 227
Query: 1876 L 1876
+
Sbjct: 228 I 228
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 107 bits (269), Expect = 2e-27
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
PD P+VT S + + W P ++G +T Y +E G Y L++
Sbjct: 7 GPDQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSM--QICYCGPGLSY 63
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
+ L Y RV A++ G G S+ V
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
Score = 98.5 bits (246), Expect = 2e-24
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 231
PD+ P VT + W P G+ +++Y +E G + +
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQI--CYCGPGLS 62
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ L Y RV A++ G G S+ A VT
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
Score = 96.6 bits (241), Expect = 1e-23
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
PD + P+V + ++W P G + Y ++ G P +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQ--ICYCGPGLSYE 64
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ LS Y RV A++ G S V P+
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPF---SEVVACVTPPSSG 102
Score = 94.7 bits (236), Expect = 6e-23
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 575 TTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW 634
++ ++ PD + P V + W+ P G+ +T+Y ++
Sbjct: 2 SSGSSG-------PDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQ 53
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+ +I L+ Y RV A++ G S+ +
Sbjct: 54 ---ICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
Score = 88.5 bits (220), Expect = 9e-21
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 1039 TDKPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFV 1096
+ S P V+ + ++W+ P G+ +T Y +E + G
Sbjct: 2 SSGSSGPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLE-WGGVEGSMQICYC-G 58
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVP 1143
+Y++ GL Y RV+A + G E+ +T P + P
Sbjct: 59 PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP--PSSGP 103
Score = 80.8 bits (200), Expect = 5e-18
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P + + + W P NG +++T Y +E ++ +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGSMQICYCGPGLS--YE 64
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
++ L+ +TY RV A + G + + + P P +
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP--PSSGPSS 105
Score = 76.2 bits (188), Expect = 2e-16
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 74 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
S P+ P + + + + W P GTD+ Y +E +E G G
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVE-GSMQICYCGPGLS 62
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLP 158
+ L Y RV+A++ +G
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPF 89
Score = 73.1 bits (180), Expect = 2e-15
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSL 544
P + P +V+ + +++W VP G + Y +E G+ L
Sbjct: 5 SSGPDQCKPP-QVTCRSATCAQVNWEVP-LSNGTDVTEYRLE-WGGVEGSMQICYCGPGL 61
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESD 571
Y++ L Y RV+A++ +G
Sbjct: 62 SYEIKGLSPATTYYCRVQALSVVGAGP 88
Score = 60.0 bits (146), Expect = 7e-11
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVP 866
PD + P+V + ++W P G + Y ++ G P
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICYCGP 59
Score = 53.8 bits (130), Expect = 1e-08
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
P P+ + + W P G+ + Y +E + I P S
Sbjct: 7 GPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQI---CYCGPGLS 62
Score = 48.1 bits (115), Expect = 1e-06
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ PD PQ+ A + W+ P G+ + Y++E+
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGV 48
Score = 47.3 bits (113), Expect = 2e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP 479
+ Y +E G P + +KGL+ Y R++ ++ GA
Sbjct: 39 TEYRLEWGGVEGSMQICYCG--PGLSYEIKGLSPATTYYCRVQALSVVGAGPF 89
Score = 46.9 bits (112), Expect = 3e-06
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP 955
Y +E G + + L TTY RV+A ++ G
Sbjct: 40 EYRLEWGG---VEGSMQICYCGP--GLSYEIKGLSPATTYYCRVQALSVVGAGPF 89
Score = 45.4 bits (108), Expect = 1e-05
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 1875 VLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
V Y L+ + + ++ Y +Y + L Y RV+A + G S
Sbjct: 38 VTEYRLEWGGVEGSMQIC--YCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVA 94
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 111 bits (278), Expect = 2e-27
Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 37/208 (17%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDD-- 2148
F + E V+F + ++ + + N +E+ + K+ +
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 2149 YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY----- 2203
+ + + ED G Y + ++ V L L + +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 2204 ---------------------------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEI 2236
++W + +EI + + TL I E
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEF 178
Query: 2237 FPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+D+G+Y +D G+ S L+ +
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 93.5 bits (232), Expect = 2e-21
Identities = 27/203 (13%), Positives = 60/203 (29%), Gaps = 46/203 (22%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
F + E V+F + ++ + + N +E+ + K+ +
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 2068 FYSSLRKLQIDRFSIQDT------------------------------------SFDRRQ 2091
++ +++ +D R+
Sbjct: 61 I-----EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 115
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDYT 2150
P FV + S +V C+V I T + W+ + +E+ K + T
Sbjct: 116 QGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICT 172
Query: 2151 FVINRTKMEDRGEYIIRAENHYG 2173
+I +D G Y + ++ G
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRG 195
Score = 72.3 bits (177), Expect = 5e-14
Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 57/158 (36%)
Query: 2205 VIWLHNNKEIKPSND--FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
V ++ N KEI + + + ++ ED G YT + + + + S+ L+
Sbjct: 35 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV 94
Query: 2263 VQ----------------------------------------------------VSWYKD 2270
+ WYKD
Sbjct: 95 GDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKD 154
Query: 2271 GNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ 2308
+S D + + I + D G Y
Sbjct: 155 EREISVDE---KHDFKDGICTLLITEFSKKDAGIYEVI 189
Score = 58.0 bits (140), Expect = 3e-09
Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 18/145 (12%)
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPS-------------KASAPVTCKPRFVAPKIKTPL 280
+ L++ +E + + + +A R P L
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 281 KDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKR 339
+ + ++ + + W D +E+ D I I +
Sbjct: 125 SWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF---SK 180
Query: 340 SDSGTYHLELRNTSGRDEGSFTVTV 364
D+G Y + L++ G+D+ +
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 58.0 bits (140), Expect = 4e-09
Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 18/146 (12%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPS-------------DASDIIMCKQRFLAPKIKTPL 695
+ L E + + + + +A R P L
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 696 KDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKR 754
+ + ++ + + W D +E+ D I I +
Sbjct: 125 SWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI---TEFSK 180
Query: 755 SDSGTYHLELRNTSGRDEGSFTIVPD 780
D+G Y + L++ G+D+ +V +
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 53.0 bits (127), Expect = 2e-07
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 15/142 (10%)
Query: 1388 NLSEGEEYTFRVIAVNEAGNSE------PGKQSGPVIVEEQPNKPVMDLSGVR-----DI 1436
L + +E T+ + + E + + G
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 126
Query: 1437 TVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDG 1495
V + + + W+ ++ I + +L++ + D
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH---DFKDGICTLLITEFSKKDA 183
Query: 1496 GQYRLQLKNPAGFDTATLHVRV 1517
G Y + LK+ G D + L +
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVD 205
Score = 52.2 bits (125), Expect = 3e-07
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 694 PLKDIIIKAGKILNVEIQFI-GEPPPEVTWTIDGKELKTDSVR--TTVTSIGYHTIVNTV 750
+ I + +Q +V + + KE+ + G +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME- 66
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNL 785
+ D GTY +L++ + + +V D K L
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 101
Score = 50.7 bits (121), Expect = 9e-07
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 279 PLKDIIIKAGKILNVEIQFI-GEPPPEVTWTIDGKELKTDSVR--TTVTSIGYHTIVNTV 335
+ I + +Q +V + + KE+ + G +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME- 66
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSK 379
+ D GTY +L++ + + + +
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 110
Score = 48.8 bits (116), Expect = 4e-06
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDD 2065
R+ P FV + S +V C+V I T + W+ + +E+ +
Sbjct: 114 RKQGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---------EK 163
Query: 2066 YTFYSSLRKLQIDRFSIQD 2084
+ F + L I FS +D
Sbjct: 164 HDFKDGICTLLITEFSKKD 182
Score = 44.2 bits (104), Expect = 2e-04
Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 1434 RDITVKAGED--FSIHVPFMAFPQPAAFWFAND-SIIDDSDTRVHKQLTMNSASLVVKNS 1490
+ + F + + N+ I + ++H + ++
Sbjct: 10 LAVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 1491 QRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
Q D G Y QL++ + +T+ + +
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 103
Score = 39.9 bits (93), Expect = 0.004
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 2264 QVSWYKDGNPVSDDPAT-YQFTQIGQTYKMKILSTTLDDVGQYSAQ 2308
+V++ + + + P + +M + +D G Y+ Q
Sbjct: 34 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A*
3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A*
3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 113 bits (285), Expect = 3e-27
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI---RKEIDIMNQLHHPK 1746
Y++ E +G G VH R+ + A K + + R+E L+HP
Sbjct: 14 YELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA 73
Query: 1747 LINLHDAFEDDDEMV----LIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
++ ++D E + ++ E++ G L + + + M+ I + C+A+
Sbjct: 74 IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT-EGPMTPKRAIEVIADACQALNFS 132
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST----GTAEFAAPEI 1858
H+ IIH DVKP NIM N VK++DFG+A + + T GTA++ +PE
Sbjct: 133 HQNGIIHRDVKPANIMISATN--AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQ 190
Query: 1859 VEREPVGFYTDMWAVGVLAY 1878
+ V +D++++G + Y
Sbjct: 191 ARGDSVDARSDVYSLGCVLY 210
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP;
3.46A {Homo sapiens}
Length = 319
Score = 113 bits (285), Expect = 3e-27
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 23/207 (11%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHH 1744
++ +I E IG G FG V+ R A + I + + E +L ++E+ Q H
Sbjct: 32 FEQLEIGELIGKGRFGQVYHGRWHGE---VAIRLIDIERDNEDQLKAFKREVMAYRQTRH 88
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
++ A + +I G L+ + + + +++ + + ++H
Sbjct: 89 ENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA 148
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLAT------KLDPNEVVKISTGTAEFAAPEI 1858
K I+H D+K +N+ ++ V + DFGL + + ++I G APEI
Sbjct: 149 KGILHKDLKSKNVFY---DNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEI 205
Query: 1859 V---------EREPVGFYTDMWAVGVL 1876
+ ++ P ++D++A+G +
Sbjct: 206 IRQLSPDTEEDKLPFSKHSDVFALGTI 232
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 115 bits (291), Expect = 4e-27
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 1749
Y + IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL----QDKRFKNRELQIMRKLDHCNIVR 111
Query: 1750 LHDAF------EDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
L F +D+ + L+ +++ + + + V YM Q+ ++ +
Sbjct: 112 LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 171
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA-----AP 1856
+H I H D+KP+N++ ++ +K+ DFG A +L E + AP
Sbjct: 172 IHSFGICHRDIKPQNLLL-DPDTAVLKLCDFGSAKQLVRGEPN-----VSYICSRYYRAP 225
Query: 1857 EIVEREPVGF--YT---DMWAVG-VLA 1877
E++ G YT D+W+ G VLA
Sbjct: 226 ELI----FGATDYTSSIDVWSAGCVLA 248
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 106 bits (265), Expect = 7e-27
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDAN-------- 1375
PP P V R++ +SV L W P+ + G I + VQ R G +W N
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 1376 ---SVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
S + +V +L Y FR++AV +++ S ++
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 102 bits (256), Expect = 1e-25
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRAN------- 1275
P+ P VT S SV L W P N G PI + V+ R G W N
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 1276 ----NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCK 1320
+ + +V DL+ Y FR++A+ K S + +
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 101 bits (252), Expect = 4e-25
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK--------------YG 217
G P P VT + V L W P+ + G PI + ++ + YG
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 218 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+ + + TA+ V DLK Y FR++AV + S SA +P
Sbjct: 60 KPKWNSELGKSFTAS-VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
Score = 95.8 bits (238), Expect = 3e-23
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPY-WMNALE------- 639
P P V ++ V L W P + G PI + +Q + G W +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 640 ----VPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQ 684
+ DL Y FR++AV ++ S+ S +
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
Score = 84.6 bits (209), Expect = 2e-19
Identities = 28/151 (18%), Positives = 39/151 (25%), Gaps = 49/151 (32%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG--GDWVDANSVPVPNPV 871
PP P V R++ +SV L W P+ + G I + VQ R G +W N
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 872 HTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATV 931
N A+V
Sbjct: 62 KW----------------------------------------------NSELGKSFTASV 75
Query: 932 PRLLEGTTYEFRVRAENLQGLSEPITTKEPV 962
L TY FR+ A ++ T
Sbjct: 76 TDLKPQHTYRFRILAVYSNNDNKESNTSAKF 106
Score = 83.0 bits (205), Expect = 9e-19
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA-------------TGF 1088
PP P +V+ ++ ES L W P + G PI + V+ G
Sbjct: 3 TYPP-TPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 1089 WSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
S +S V L+ YRFR+ A ++
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
Score = 74.2 bits (182), Expect = 1e-15
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYN-STVWTKVSSYVTTPFV 1579
+PP + + +S+ L W PR+ G I + V+ + W + +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 1580 R------------VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 1615
+ V +L TY FR++A +K + T +
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 73.8 bits (181), Expect = 1e-15
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE-KMDISRGTWSDAGMTVS--- 543
PP P V+ ++ ES L W VP + G PI+ + ++ +M R W +
Sbjct: 3 TYPPTPP-NVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 544 ----------LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTK 577
V L + Y FR+ AV S ++ T+
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSA 104
Score = 68.4 bits (167), Expect = 1e-13
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGD----- 126
PP P + ++ S L W PR+ G I+ + V+ +M + W D
Sbjct: 2 STYPPTPP-NVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 127 --------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 168
+L H Y FR+ AV ++ S +AK
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE----SNTSAK 105
Score = 55.7 bits (134), Expect = 4e-09
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDK-WIKASMAHIPDT 1678
P P +++S+ L W PR + G PI + V+ R++ K W +
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 1679 SLKYTSSVYD 1688
+
Sbjct: 61 PKWNSELGKS 70
Score = 53.8 bits (129), Expect = 2e-08
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
PP P + + L W PR + G I +KV++R +
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKN 48
Score = 52.2 bits (125), Expect = 5e-08
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 1875 VLAYVL---DVAEDTNWRVAND-----------YLVKDPTYIVHSLLQGHDYEFRVKAKN 1920
++ + + V + NW+ ND L K T V L H Y FR+ A
Sbjct: 33 IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 92
Query: 1921 AAGFSKPSSTSK 1932
+ +K S+TS
Sbjct: 93 SNNDNKESNTSA 104
Score = 44.1 bits (104), Expect = 4e-05
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 13/64 (20%)
Query: 429 YIIEMAEYGL-DNWKTV------------PGFCPKEFFTVKGLTEGKKYVFRIRTENMYG 475
+ ++ G NW+T +V L Y FRI
Sbjct: 36 FKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNN 95
Query: 476 ASEP 479
++
Sbjct: 96 DNKE 99
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 109 bits (274), Expect = 7e-27
Identities = 38/200 (19%), Positives = 57/200 (28%), Gaps = 28/200 (14%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
P + KPQ+ G F C P++ W N +++ +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 2151 FVIN---RTKMEDRGEYIIRAENHYGYREEV-VFLNVQRKYDLP------VIHYKNHR-- 2198
++ D Y AEN G L + P
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 2199 ---------RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTC 2246
+A ++ W+ N ++ SN L+I ED G Y C
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYEC 180
Query: 2247 EAFNDEGESFSSCTLL-VQV 2265
A N G S T L V+V
Sbjct: 181 VAENSMGTEHSKATNLYVKV 200
Score = 101 bits (253), Expect = 4e-24
Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 25/212 (11%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
P + KPQ+ G F C P++ W N +++ +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 2068 FYSSLRKLQIDR--------------------FSIQ-DTSFDRRQAAPRFVIKPQSAFCY 2106
+ ++ R ++ P P +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G +V TC+ I TP + W N ++ S RY+ D I ++ ED+G+Y
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS---NPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 2167 RAENHYGYRE-EVVFLNVQRKYDLPVIHYKNH 2197
AEN G + L V+ + H+ +H
Sbjct: 181 VAENSMGTEHSKATNLYVKVRRVGTKHHHHHH 212
Score = 64.4 bits (157), Expect = 3e-11
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMD---LSGVRDITVKAGEDFSIHVPFMA 1452
+ +A N G + + + E P G ++ G + +
Sbjct: 79 PYECVAENGVG--DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 1453 FPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1512
P P +W N + +D S+ R ++ L ++NS+ D G+Y +N G + +
Sbjct: 137 NPTPNIYWIKNQTKVDMSNPRY----SLKDGFLQIENSREEDQGKYECVAENSMGTEHSK 192
Query: 1513 ---LHVRVL-DRPHPPENLH 1528
L+V+V + H
Sbjct: 193 ATNLYVKVRRVGTKHHHHHH 212
Score = 56.0 bits (135), Expect = 2e-08
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV-TSIGYHT 330
P+I ++ ++ G + + G+PPP + W +GK++ R TV G +
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 331 IVN-TVNTKRSDSGTYHLELRNTSG-RDEGSFTVTVLET 367
I+ D Y N G T+T+ E
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG 103
Score = 54.4 bits (131), Expect = 6e-08
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 50/147 (34%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFP----EDSGVYTCEAFNDEGESFS-S 2258
++W N K++ + Y+ + + I I P D Y C A N G++ S
Sbjct: 37 SIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSAD 95
Query: 2259 CTLLVQ----------------------------------------VSWYKDGNPVSDDP 2278
TL + + W K+ V D
Sbjct: 96 ATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DM 153
Query: 2279 ATYQFTQIGQTYKMKILSTTLDDVGQY 2305
+ +++ ++I ++ +D G+Y
Sbjct: 154 SNPRYSLKDGF--LQIENSREEDQGKY 178
Score = 53.3 bits (128), Expect = 2e-07
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVT----CKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIG 299
+ +A N G + A A +T K P I +I+ G + + + IG
Sbjct: 79 PYECVAENGVG--DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 359
P P + W + ++ + R ++ G+ I N++ D G Y N+ G +
Sbjct: 137 NPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQI---ENSREEDQGKYECVAENSMGTEHSK 192
Query: 360 ---FTVTVLETISK 370
V V +K
Sbjct: 193 ATNLYVKVRRVGTK 206
Score = 52.9 bits (127), Expect = 2e-07
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRF--LAPKIKTPLKDIIIKAGKILNVEIQFIGEP 716
+ +A N G + +DA+ I + P I +I+ G + + + IG P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 717 PPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 774
P + W + ++ + R ++ G+ I N++ D G Y N+ G +
Sbjct: 139 TPNIYWIKNQTKVDMSNPRYSLKD-GFLQI---ENSREEDQGKYECVAENSMGTEHSK 192
Score = 52.9 bits (127), Expect = 2e-07
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV-TSIGYHTI 746
P+I ++ ++ G + + G+PPP + W +GK++ R TV G +I
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 747 VN-TVNTKRSDSGTYHLELRNTSG 769
+ D Y N G
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVG 89
Score = 49.8 bits (119), Expect = 2e-06
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
P P + G +V TC+ I TP + W N ++ S RY+
Sbjct: 105 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS---NPRYSLK 161
Query: 2065 DYTFYSSLRKLQIDRFSIQD 2084
D LQI+ +D
Sbjct: 162 DGF-------LQIENSREED 174
Score = 39.4 bits (92), Expect = 0.006
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 15/119 (12%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASL--VVKNSQ 1491
++ V+ G S + P P+ W N + + +R S+ +
Sbjct: 14 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRA 73
Query: 1492 RSDGGQYRLQLKNPAGFD---TATLHVRVLDRPH--------PPENLHADEFAGDSLTL 1539
D Y +N G ATL + D+ P + G ++ +
Sbjct: 74 GRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV--GHTVLM 130
Score = 31.3 bits (71), Expect = 2.6
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKIL--STTLDDVGQYS 2306
+ W K+G VS + Y + + + D Y
Sbjct: 37 SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle
cytokine, hematopoietic cytokine-receptor complex, cell
surface, EXTR complex; 7.80A {Homo sapiens}
Length = 527
Score = 116 bits (291), Expect = 9e-27
Identities = 43/293 (14%), Positives = 80/293 (27%), Gaps = 44/293 (15%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAI-ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
F G+ + C+ + + LTW N+ L++ F + T
Sbjct: 228 QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 2070 SSLRKLQIDRFSIQD--------------TSFDRRQAAPRFVIKP--QSAFCYEGQSVKF 2113
L + + D ++ + + + F
Sbjct: 288 RIL-FAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 2114 TCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG 2173
+ R A TW + + ++ + Y+ GEYI AEN
Sbjct: 347 SVRFKAYPQIRCTWTFSRKSFPCE----QKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 2174 YREEVVFLNVQRK------------------YDLPVIH-YKNHRRANKYDVIWLHNNKEI 2214
++ LN++RK Y LP K ++
Sbjct: 403 QFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR 462
Query: 2215 KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSW 2267
K + + TL ++E + C A+N G S + L +
Sbjct: 463 KANRKV-FGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 116 bits (291), Expect = 9e-27
Identities = 44/395 (11%), Positives = 92/395 (23%), Gaps = 94/395 (23%)
Query: 2000 QDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS--VKF 2057
+D R + V + + S+ V A + W + L
Sbjct: 38 EDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL 97
Query: 2058 MKRYAGDDYTFYSSLRKLQIDRFSIQDT----------------SFD-RRQAAPRFVIKP 2100
R + I + + F + + ++
Sbjct: 98 QNRGVV----------SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Query: 2101 QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMED 2160
E C ++ P + W + + + + + +
Sbjct: 148 PYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE----LF 202
Query: 2161 RGEYIIRAENHYGY---REEVVFLNVQRKYDLPVIHYKNHRRAN----------KYDVIW 2207
+ A N G R + LN + LP + K + + W
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTW 262
Query: 2208 LHNNKEIKPSNDFAYS------SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS---- 2257
NK ++ N F S ++ + ++ + D+G YTC + +S
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIV 322
Query: 2258 --------------------SCTLLV--------QVSWYKDGNPVSDDPATYQFTQIGQT 2289
V + +W + +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNG 377
Query: 2290 YKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
Y + G+Y F+LN+
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 111 bits (279), Expect = 3e-25
Identities = 30/305 (9%), Positives = 76/305 (24%), Gaps = 53/305 (17%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ + ++ E C ++ P + W + + + ++
Sbjct: 138 RNTLLYTLRRPYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGE--------SCKEESP 188
Query: 2068 FYSSLRKLQIDRFSIQD-------------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFT 2114
+ + D T F G+ +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248
Query: 2115 CRVIAI-ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV------INRTKMEDRGEYIIR 2167
C+ + + LTW N+ L++ F + T + ++ D G Y
Sbjct: 249 CKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
Query: 2168 AENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN---------------KYDVIWLHNNK 2212
+ H + + + K + + + + W + K
Sbjct: 309 SSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV--SWYKD 2270
+ + +++ G Y A ND+ + TL ++ +
Sbjct: 366 SFPCEQK----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE 421
Query: 2271 GNPVS 2275
+
Sbjct: 422 ASASQ 426
Score = 78.6 bits (193), Expect = 1e-14
Identities = 46/405 (11%), Positives = 99/405 (24%), Gaps = 39/405 (9%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
+ + + +L + P + GE + +
Sbjct: 139 NTLLYTLRRPYFRKMENQDAL--VCISE--SVPEPIVEWVLCDSQGESCKEESPAVVKKE 194
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
V G R A NE G T + + P++ + +
Sbjct: 195 EKVLHELFGTDI--RCCARNELGRECTRLFTIDL------NQTPQTTLPQLFLKVGEPLW 246
Query: 1344 LSWRPPKHDGGARIK-----GYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFR 1398
+ + + G + + + N + V +++ + +
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 1399 VIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1458
+ QS V + E+ + S D + E+F V F A+PQ
Sbjct: 307 CSSSKHPS------QSALVTIVEKGFINATNSS--EDYEIDQYEEFCFSVRFKAYPQIRC 358
Query: 1459 FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
W + + N S+ + + G+Y +N T + +
Sbjct: 359 TWTFSRKSFPCEQKGLD-----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
Query: 1519 DRPH---PPENLHAD-EFAGD-SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 1573
+P A G + W + + +
Sbjct: 414 RKPQVLAEASASQASCFSDGYPLPSWTWKK---CSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPF 1618
+ + + A N G S + ++ PF
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN-SPGPFPF 514
Score = 61.6 bits (149), Expect = 2e-09
Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 16/164 (9%)
Query: 1386 VGNLSEGEEYTFRVI--AVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGV--------RD 1435
GN +I N++ + +V E P L
Sbjct: 2 TGNQDLPV-IKCVLINHKNNDSSVGKSSSY---PMVSESPEDLGCALRPQSSGTVYEAAA 57
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDG 1495
+ V ++ V A + W S ++ S+V+ +
Sbjct: 58 VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH--FDLQNRGVVSMVILKMTETQA 115
Query: 1496 GQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
G+Y L +++ A T V + + + L
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL 159
Score = 61.3 bits (148), Expect = 3e-09
Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 43/229 (18%)
Query: 152 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 211
K+GE L + C+ + +T W + + E
Sbjct: 240 KVGEPLWIRCK--AVHVNH--------GFGLT----------WE---LENKALEEGNYFE 276
Query: 212 KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 271
I+ A +++ + D G + + A + K
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARND--TGY---YTCSSSKHPS----QSALVTIVEKGFI 327
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+D I + ++F P TWT K + +
Sbjct: 328 ---NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNGYS 379
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL---ETISKTNTTTIS 377
++ + G Y N + FT+ + + +++ + + S
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQAS 428
Score = 58.6 bits (141), Expect = 2e-08
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS 318
S++ + C R + + + + +++ W L
Sbjct: 34 SESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP 93
Query: 319 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
+ + G ++V + + +G Y L +++ + FTV++ T
Sbjct: 94 -HFDLQNRGVVSMV-ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Score = 55.1 bits (132), Expect = 2e-07
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 12/131 (9%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+ + + + + A I+ K +D I +
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFI---NATNSSEDYEIDQYEEFC 345
Query: 708 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
++F P TWT K + + ++ + G Y N
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNGYSISKFCNHKHQPGEYIFHAEND 400
Query: 768 SGRDEGSFTIV 778
+ FT+
Sbjct: 401 DAQFTKMFTLN 411
Score = 53.9 bits (129), Expect = 5e-07
Identities = 13/121 (10%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 664 AVNEAGPSEPS------DASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPP 717
N++ + S ++ + + C R + + + + +++
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 718 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
W L + + G ++V + + +G Y L +++ + FT+
Sbjct: 78 ISCLWVFKHSSLNCQP-HFDLQNRGVVSMV-ILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 778 V 778
Sbjct: 136 S 136
Score = 53.5 bits (128), Expect = 7e-07
Identities = 15/201 (7%), Positives = 39/201 (19%), Gaps = 59/201 (29%)
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN----------- 2201
N + + Y + +E+ L Q ++ +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLG---CALRPQSS---GTVYEAAAVEVDVSASITLQVLV 72
Query: 2202 ----KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+W+ + + F + V ++ I ++ +G Y ++
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 2258 SCTLLV--------------------------------QVSWYKDGNPVSDDPATYQFTQ 2285
T+ + V W +
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA-- 189
Query: 2286 IGQTYKMKILSTTLDDVGQYS 2306
K +
Sbjct: 190 ---VVKKEEKVLHELFGTDIR 207
Score = 44.7 bits (105), Expect = 3e-04
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIG-EPP 717
+ R A NE G E + I L +T L + +K G+ L + + +
Sbjct: 205 DIRCCARNELG-RECTRLFTID------LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 718 PEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV-----NTKRSDSGTY 760
+TW ++ K L+ + T T++ + + R+D+G Y
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Score = 42.0 bits (98), Expect = 0.002
Identities = 28/266 (10%), Positives = 49/266 (18%), Gaps = 82/266 (30%)
Query: 128 SGTYT-RAENLIEGHDYNFRVKAVNKI-------------GESLPLVCQSPITAKDPFGR 173
+G YT + + I E +
Sbjct: 302 TGYYTCSSSK-HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR-------FKAY 353
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P Q T W D G IS
Sbjct: 354 P----QIRCT-WTFSRKSFPCEQKGLDNGYSIS--------------------------- 381
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT--CKPRFVAPKIKTPLKDIIIKAGKIL 291
+ + E+ A N + KP+ ++
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQ---FTKMFTLNIRRKPQ-------------VLAEASAS 425
Query: 292 NVEIQFIGEPPPEVTWTIDGKELKTDS---------VRTTVTSIGYHTIVNTVN-TKRSD 341
G P P TW + + + G +T+N ++
Sbjct: 426 QASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIK 485
Query: 342 SGTYHLELRNTSGRDEGSFTVTVLET 367
N+ G + +
Sbjct: 486 GFLVKCCAYNSLGTSCETILLNSPGP 511
Score = 41.6 bits (97), Expect = 0.003
Identities = 12/105 (11%), Positives = 23/105 (21%), Gaps = 7/105 (6%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
+ + P P V W + + ++ +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK----- 193
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLETISKTNTTTI 376
RN GR+ FT+ + +T T
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF 238
Score = 39.7 bits (92), Expect = 0.013
Identities = 8/84 (9%), Positives = 16/84 (19%), Gaps = 6/84 (7%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+ + P P V W + + ++ +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK----- 193
Query: 748 NTVNTKRSDSGTYHLELRNTSGRD 771
RN GR+
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRE 217
Score = 36.2 bits (83), Expect = 0.13
Identities = 16/114 (14%), Positives = 27/114 (23%), Gaps = 23/114 (20%)
Query: 699 IIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS---------VRTTVTSIGYHTIVNT 749
++ G P P TW + + + G +T
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477
Query: 750 VN-TKRSDSGTYHLELRNTSGRDE--------GSFTIVPDHLKNLWNTKKSLHP 794
+N ++ N+ G G F + D TK H
Sbjct: 478 LNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDG-----GTKHHHHH 526
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 113 bits (286), Expect = 1e-26
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 34/209 (16%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
Y + IG G+FGVV + + ++ + A K + +K +E+ IM + HP +
Sbjct: 40 IAYTNCKVIGNGSFGVVFQAKLVESDEV-AIKKVL----QDKRFKNRELQIMRIVKHPNV 94
Query: 1748 INLHDAF------EDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINYMRQVCEAV 1799
++L F +D+ + L+ E++ M + YM Q+ ++
Sbjct: 95 VDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSL 154
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA----- 1854
++H I H D+KP+N++ S +K+IDFG A L E +
Sbjct: 155 AYIHSIGICHRDIKPQNLLL-DPPSGVLKLIDFGSAKILIAGE-----PNVSYICSRYYR 208
Query: 1855 APEIVEREPVGF--YT---DMWAVG-VLA 1877
APE++ G YT D+W+ G V+A
Sbjct: 209 APELI----FGATNYTTNIDIWSTGCVMA 233
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET:
NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 110 bits (276), Expect = 1e-26
Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 54/284 (19%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
++P ++ ++V C V+ + + WF N +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ----------------- 44
Query: 2070 SSLRKLQIDRFSIQDT--------------SFDRRQAAPRFVIKPQSAFCYEGQSVKFTC 2115
+S +I S+ D+ +++ S EG+ + C
Sbjct: 45 TSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRC 104
Query: 2116 RVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGY 2174
+ ++ N + K + + I +T + G Y + Y
Sbjct: 105 HAWKDKLVYNVLYYRNGKAFK--------FFHWNSNLTILKTNISHNGTYHCSGMGKHRY 156
Query: 2175 REEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPS------------NDFAY 2222
+ + V+ + PV++ + +++ L ++
Sbjct: 157 TSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL 216
Query: 2223 SSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS-SCTLLVQV 2265
+I EDSG+Y CEA ++G S L +QV
Sbjct: 217 RGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 44.1 bits (104), Expect = 3e-04
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+ V + +GK K TI+ T S +GTYH
Sbjct: 109 DKLVYNVLYYRNGKAFKFFH------WNSNLTILKT---NISHNGTYHCSGMGKHRYTSA 159
Query: 359 SFTVTVLETISKTNTTTISS 378
+VTV E +
Sbjct: 160 GISVTVKELFPAPVLNASVT 179
Score = 43.8 bits (103), Expect = 3e-04
Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 27/175 (15%)
Query: 1371 WVDANSVPVPNPVHTVGNLSEGE--EYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVM 1428
+++ + P + + + S + EY + G S +S P+ +E ++
Sbjct: 37 FLNGTATQTSTPSYRITSASVNDSGEYRC------QRGLSG---RSDPIQLEIHRGWLLL 87
Query: 1429 DLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQLTMNSASLVV 1487
+S GE ++ ++ N +++L +
Sbjct: 88 QVS---SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW---------NSNLTI 135
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE---NLHADEFAGDSLTL 1539
+ S G Y + +A + V V + P ++ + G+ +TL
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTL 190
Score = 41.4 bits (97), Expect = 0.002
Identities = 32/254 (12%), Positives = 64/254 (25%), Gaps = 36/254 (14%)
Query: 1270 EWLRANNY-PTTNLNFTVHDLRE--GGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKP 1326
+W T+ ++ + G+Y + G S P + E R
Sbjct: 35 QWFLNGTATQTSTPSYRITSASVNDSGEYRC------QRGLSGRSDPIQL----EIHRGW 84
Query: 1327 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTV 1386
+ + + L K + Y + G N T+
Sbjct: 85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY------RNGKAFKFFH---WNSNLTI 135
Query: 1387 GNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSI 1446
+ T+ + + + V V+E PV++ S + G ++
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTS---AGISVTVKELFPAPVLNASV--TSPLLEGNLVTL 190
Query: 1447 HVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPA 1506
Q + + S+ + ++R D G Y +
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSK----TLRGRNTSSEYQILTARREDSGLYWCEAATED 246
Query: 1507 GF-----DTATLHV 1515
G L V
Sbjct: 247 GNVLKRSPELELQV 260
Score = 38.7 bits (90), Expect = 0.016
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
+ V + +GK K TI + T S +GTYH
Sbjct: 109 DKLVYNVLYYRNGKAFKFFH------WNSNLTI---LKTNISHNGTYHCSGMGKHRYTSA 159
Query: 774 SFTI 777
++
Sbjct: 160 GISV 163
Score = 36.4 bits (84), Expect = 0.088
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 19/78 (24%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
+F E++ CE W+ +G +Y+
Sbjct: 11 VSVFQEETVTLHCEV--------LHLPGSSSTQWFLNGTATQTSTPSYR----------- 51
Query: 2294 ILSTTLDDVGQYSAQMGG 2311
I S +++D G+Y Q G
Sbjct: 52 ITSASVNDSGEYRCQRGL 69
Score = 33.7 bits (77), Expect = 0.59
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 716 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 775
W ++G +T + + I + +DSG Y + + D
Sbjct: 30 GSSSTQWFLNGTATQTST--------PSYRITSA---SVNDSGEYRCQRGLSGRSDPIQL 78
Query: 776 TIVPDHL 782
I L
Sbjct: 79 EIHRGWL 85
Score = 33.4 bits (76), Expect = 0.68
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 360
W ++G +T + + I + +DSG Y + + D
Sbjct: 30 GSSSTQWFLNGTATQTST--------PSYRITSA---SVNDSGEYRCQRGLSGRSDPIQL 78
Query: 361 TVTVLETISKTNTTTIS 377
+ + + ++ +
Sbjct: 79 EIHRGWLLLQVSSRVFT 95
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 105 bits (262), Expect = 1e-26
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 7/112 (6%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRAN-NYPT 1279
S +P + V +P V L W+PP + GY +E R+ W +
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPPELVPK-RLDGYVLEGRQGSQGWEVLDPAVAG 60
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
T V L + YEFR++A + PS ++ P +
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANV-----STSGLSGPSS 107
Score = 96.2 bits (239), Expect = 2e-23
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 583 NEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPA 642
+ +P + V V L W PP + Y+++ ++ + + V
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAG 60
Query: 643 NKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+T++ +P L K YEFR++A + S+PS+ +++
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS 98
Score = 94.2 bits (234), Expect = 9e-23
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS-VPVPNPVH 1384
PP R T V L W PP R+ GY+++ R+ W + V
Sbjct: 8 LSPPRGLVAVR-TPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
V L + Y FR++A + S+P +
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 90.8 bits (225), Expect = 2e-21
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPANITAT 232
P + V V L W PP+ + Y++E + WE V T
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
VP L + YEFR++A +PS + T
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99
Score = 84.2 bits (208), Expect = 2e-19
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 1041 KPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFV-- 1096
S P V+ TP L W PP + + YV+E + W L V
Sbjct: 3 SGSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLE-GRQGSQGWEVLDPAVAG 60
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
V GL + Y FR+ A VS+P N T+ P
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSG-----LSGP 105
Score = 75.7 bits (186), Expect = 3e-16
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV--TT 1576
PP L A + L+W PP + + YV+E + + W + V T
Sbjct: 6 SGLSPPRGLVAVR-TPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQG-WEVLDPAVAGTE 62
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKA 1614
+ V L YEFR++A +S P+ T + +
Sbjct: 63 TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100
Score = 69.6 bits (170), Expect = 3e-14
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 74 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGT 130
S P + + T L W P + YV+E + W + V+GT
Sbjct: 4 GSSGLSPPRGLVAVRTPRGVLLHWDPPELVPKR-LDGYVLEG-RQGSQGWEVLDPAVAGT 61
Query: 131 YTR--AENLIEGHDYNFRVKAVNKIGESLP 158
T LI+ Y FR+ A S P
Sbjct: 62 ETELLVPGLIKDVLYEFRLVAFAGSFVSDP 91
Score = 69.6 bits (170), Expect = 4e-14
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 476 ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW 535
S SPP G V+ T L W P + + Y++E W
Sbjct: 1 GSSGSSG-----LSPPRGL--VAVRTPRGVLLHWDPP-ELVPKRLDGYVLEG-RQGSQGW 51
Query: 536 SDAGMTV---SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
V VP LI Y FR+ A SD T + +
Sbjct: 52 EVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100
Score = 63.8 bits (155), Expect = 5e-12
Identities = 27/142 (19%), Positives = 38/142 (26%), Gaps = 58/142 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP R T V L W PP R+ GY++
Sbjct: 8 LSPPRGLVAVR-TPRGVLLHWDPP-ELVPKRLDGYVL----------------------- 42
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
E + G GW V+ + VP
Sbjct: 43 -------------EGRQGS--------------------QGWEVLDPAVAGTETELLVPG 69
Query: 934 LLEGTTYEFRVRAENLQGLSEP 955
L++ YEFR+ A +S+P
Sbjct: 70 LIKDVLYEFRLVAFAGSFVSDP 91
Score = 49.5 bits (118), Expect = 4e-07
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 4/70 (5%)
Query: 1614 AKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMA 1673
+P T + L W P + Y++E R W
Sbjct: 1 GSSGSS-GLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQ-GSQGWEVLD-P 56
Query: 1674 HIPDTSLKYT 1683
+ T +
Sbjct: 57 AVAGTETELL 66
Score = 49.2 bits (117), Expect = 5e-07
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1878 YVLDVAEDT-NWRVAN-DYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
YVL+ + + W V + + +V L++ YEFR+ A + S PS+T+
Sbjct: 40 YVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 43.8 bits (103), Expect = 4e-05
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKE--FFTVKGLTEGKKYVFRIRTENMYGASEPLDP--L 483
Y++E + G W+ + V GL + Y FR+ S+P + +
Sbjct: 39 GYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANV 97
Query: 484 FPDKPSPP 491
S P
Sbjct: 98 STSGLSGP 105
Score = 39.1 bits (91), Expect = 0.002
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRS 1183
+ PP + + L WD P ++ GY +E R
Sbjct: 4 GSSGLSPP-RGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQ 46
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 104 bits (262), Expect = 2e-26
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 225
A+ P P L T DGG+PI +YI++ + K V
Sbjct: 2 AEASMREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
N + L+ YE ++ A N+ G EP+ + KP +
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
Score = 104 bits (260), Expect = 4e-26
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 581 ARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEV 640
A EP P + L+ +DGG+PI +YI++ + K +V
Sbjct: 2 AEASMREPSPP-SIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 641 PANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASD 678
NK + + L YE ++ A N G SEP+
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF 97
Score = 99.5 bits (248), Expect = 1e-24
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 1326 PDPPEAPKVDR--ITKDSVTLSWRPPKHDGGARIKGYIVQKRKK-GGDWVDANSVPVPNP 1382
P P + + S LS DGGA I YIV+ R K D V
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
+ +L Y ++ A N G SEP + +
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 102
Score = 98.4 bits (245), Expect = 3e-24
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 1220 QSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYP 1278
++ P P S S L+ + GG PI Y V+ R + E
Sbjct: 3 EASMREPSPP-SIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ + L+ YE ++ A N G +P+ + P P
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSM-------PPKPNIIK 107
Score = 93.4 bits (232), Expect = 2e-22
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 1036 RPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF 1095
+PSPP + + +S LS DDGG+PI Y+V+
Sbjct: 3 EASMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 1096 -VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ L+ Y ++ A N+ G SEP + S+ K P + D
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK-PNIIKDHH 110
Score = 88.0 bits (218), Expect = 2e-20
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VT 1575
+ P PP ++H +G S L T D GG+ I Y+V+ + +
Sbjct: 5 SMREPSPP-SIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRSKDKEDQWLEKKVQGN 62
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPF 1618
+ + +L YE ++ A N+ G S+P + + K
Sbjct: 63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNI 105
Score = 83.3 bits (206), Expect = 6e-19
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
PSPP + + S L DDGG IL Y+V+ + V G
Sbjct: 9 PSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDH 65
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 171
E+L Y ++ A N++G S P V + + K
Sbjct: 66 IILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNI 105
Score = 79.9 bits (197), Expect = 1e-17
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-- 542
+PSPP + + +S KLS DDGGAPIL YI++ +
Sbjct: 6 MREPSPPS--IHGQPSSGKSFKLSIT-KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN 62
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ L Y ++ A N +G S+ + +
Sbjct: 63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 102
Score = 61.8 bits (150), Expect = 2e-11
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
Y+++ R V H + L YE ++ A N G SEP +
Sbjct: 39 LEYIVKYRS-KDKEDQWL-EKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE 96
Query: 960 EPVVAK 965
+ K
Sbjct: 97 FSMPPK 102
Score = 60.6 bits (147), Expect = 6e-11
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 814 PDPPEAPKVDR--ITKDSVTLSWRPPKHDGGARIKGYIVQKRKK-GGDWVDANSVPVPNP 870
P P + + S LS DGGA I YIV+ R K D V
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64
Query: 871 VHTL 874
L
Sbjct: 65 HIIL 68
Score = 59.5 bits (144), Expect = 1e-10
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 1613 KAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASM 1672
+A+ P P G S+ S L + DGG+PI YIV+ R +
Sbjct: 1 EAEASMREPSPPSIH-GQPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLE-- 56
Query: 1673 AHIPDTSLKYT 1683
+
Sbjct: 57 KKVQGNKDHII 67
Score = 52.1 bits (125), Expect = 5e-08
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 417 NHLPIMEAVKSRYIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENM 473
PI YI++ ++ V G K+ ++ L Y +I N
Sbjct: 34 GGAPI-----LEYIVKYRSKDKEDQWLEKKVQG--NKDHIILEHLQWTMGYEVQITAANR 86
Query: 474 YGASEPLDPLFPDKPSPPEGP 494
G SEP F P P
Sbjct: 87 LGYSEPTVYEFSMPPKPNIIK 107
Score = 49.8 bits (119), Expect = 4e-07
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 1875 VLAYVLD--VAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
+L Y++ + + + I+ L YE ++ A N G+S+P+
Sbjct: 38 ILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF 97
Query: 1933 ERPKFP 1938
P P
Sbjct: 98 SMPPKP 103
Score = 43.3 bits (102), Expect = 6e-05
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 1141 TVPDPPGQPQI--VDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
P P I + L + DGG+ I Y V++RS
Sbjct: 4 ASMREPSPPSIHGQPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSK 48
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 112 bits (283), Expect = 2e-26
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 23/205 (11%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQL--- 1742
D Y+I IG G+FG V + +R A K I N + + E+ ++ +
Sbjct: 54 DRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKII---KNKKAFLNQAQIEVRLLELMNKH 110
Query: 1743 -----HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQVC 1796
++ +++L F + + L+FE LS L++ + +++ +S + +Q+C
Sbjct: 111 DTEMKYY--IVHLKRHFMFRNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMC 167
Query: 1797 EAVKHMHEK--NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF- 1853
A+ + +IIH D+KPENI+ + +K++DFG + +L I + F
Sbjct: 168 TALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQS---RFY 224
Query: 1854 AAPEIVEREPVGFYTDMWAVGVLAY 1878
+PE++ P DMW++G +
Sbjct: 225 RSPEVLLGMPYDLAIDMWSLGCILV 249
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 113 bits (283), Expect = 2e-26
Identities = 58/392 (14%), Positives = 106/392 (27%), Gaps = 88/392 (22%)
Query: 2009 AAPRFVIKPQSA---FCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
+ P FV +P E + VK +C V P + W N ++ + F
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 2066 YTFYSSLRKLQIDRFS----------IQDTSFDRRQAAPRFVIKPQSAF-CYEGQSVKFT 2114
+ + + + + + F + +S GQ +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 2115 CRVIA-IATPTLTWFHNNQELKQSVKFMKRYA-GDDYTFVINRTKMEDRGEYIIRAENHY 2172
C + W N Q +R+ + I + + D G Y N
Sbjct: 124 CGPPPHSGELSYAWIFNEYPSYQD---NRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Query: 2173 GYREE-------VVFLNVQRKYDLPVIHYKNHR--------------RANKY---DVIWL 2208
+ ++ + P I + A ++W
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 2209 HNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ---- 2264
+ + + S L+I ED+G Y C A N G++ + L
Sbjct: 241 RADGKPIARKARRHKSN---GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297
Query: 2265 -----------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMKIL 2295
W K+G+P+ + T + I
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD---RIQIEQGT--LNIT 352
Query: 2296 STTLDDVGQY----SAQMGGIIAAFSLNVVKE 2323
L D G Y + G I ++ L+V+ E
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 94.9 bits (236), Expect = 2e-20
Identities = 39/225 (17%), Positives = 64/225 (28%), Gaps = 36/225 (16%)
Query: 1979 PLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIA 2038
+ L +++ V P++ +G +VK C +
Sbjct: 179 TVTNHKVLGPPTPL-----ILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233
Query: 2039 TPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQDT---------SFDR 2089
PT+ W + + + S L+I F +D S +
Sbjct: 234 VPTILWRRADGKP----------IARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGK 283
Query: 2090 R--------QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2141
A P +V +SV + C+ PT W N L
Sbjct: 284 NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR---- 339
Query: 2142 KRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
R + T I + D G Y AEN +G L+V +
Sbjct: 340 DRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 69.1 bits (169), Expect = 6e-12
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPN----KPVMDLSGVRDITVKAGEDFSIHVPFM 1451
+ + N N + P+I+ +P +++ + + G + +
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230
Query: 1452 AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
P P W D R H ++ L + N Q+ D G Y +N G + A
Sbjct: 231 GNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 1512 TLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
+ +P+ ++H +S+
Sbjct: 287 KGQLTFYAQPNWVQIINDIHVAM--EESVFW 315
Score = 57.2 bits (138), Expect = 3e-08
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 32/162 (19%)
Query: 1371 WVDANSVPVPNPVHTV---GNLS--------EGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
W A+ P+ G L G Y +A N G + G +
Sbjct: 239 WRRADGKPIARKARRHKSNGILEIPNFQQEDAGS-YE--CVAENSRGKNV---AKGQLTF 292
Query: 1420 EEQPN---KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHK 1476
QPN DI V E P+P W N + D R+
Sbjct: 293 YAQPNWVQII-------NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RIQ- 343
Query: 1477 QLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
+ +L + SD G Y+ +N G ++ + V+
Sbjct: 344 ---IEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 53.7 bits (129), Expect = 4e-07
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+A N G + A +T P + DI + + + E + G P P W
Sbjct: 276 VAENSRGK---NVAKGQLTFY---AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+G L T I SD+G Y N G S ++
Sbjct: 330 LKNGDPLLTR---------DRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Query: 364 VL 365
V+
Sbjct: 381 VI 382
Score = 53.3 bits (128), Expect = 5e-07
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 245 FRVIAVNKGGPGEPSKASAPVTCKPRFV----APKIKT-PLKDIIIKAGKILNVEIQFIG 299
+ + N + P+ + V PKI+ + + + G + +E +G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 359
P P + W + R + I+ N ++ D+G+Y N+ G++
Sbjct: 232 NPVPTILWRRADGKPIARKARRHK----SNGILEIPNFQQEDAGSYECVAENSRGKNVAK 287
Query: 360 FTVTVLE 366
+T
Sbjct: 288 GQLTFYA 294
Score = 50.6 bits (121), Expect = 4e-06
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 1411 GKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDS 1470
G SGPV V+E + V + + P+P W N + +D
Sbjct: 1 GPGSGPVFVQEPSH--------VMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG 52
Query: 1471 DTRVHKQLTMNSASLVVKNSQR-SDGGQYRLQLKNPAGFD---TATLHVRVLDR--PHPP 1524
+ ++ SL++ N + D G Y+ N G A L L+
Sbjct: 53 MDFRY---SVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR 109
Query: 1525 ENLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
+ G + L PP +G
Sbjct: 110 STVSVRR--GQGMVLLCGPPPHSGELSYA 136
Score = 47.1 bits (112), Expect = 5e-05
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 40/193 (20%)
Query: 1375 NSVPVPNPVHTVGNLSEGEEYTFRV-----------IAVNEAG--NSEPGKQSGPVIVEE 1421
N V + ++ +G IA N G S K +
Sbjct: 45 NGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAK----LQFAY 100
Query: 1422 QPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTM 1480
N S ++V+ G+ + P + + W N+ + R +
Sbjct: 101 LENFKTRTRS---TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV---SQ 154
Query: 1481 NSASLVVKNSQRSDGGQYRLQLKNPAGFDT---ATLHVRVLDRP-----------HPPEN 1526
+ +L + ++SD G Y + N + + + PE
Sbjct: 155 ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET 214
Query: 1527 LHADEFAGDSLTL 1539
+ A++ G ++ L
Sbjct: 215 VPAEK--GTTVKL 225
Score = 46.8 bits (111), Expect = 6e-05
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 13/91 (14%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P + DI + + + E + G P P W +G L T I
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR---------DRIQIE 345
Query: 748 NTV----NTKRSDSGTYHLELRNTSGRDEGS 774
SD+G Y N G S
Sbjct: 346 QGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Score = 46.0 bits (109), Expect = 1e-04
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 273 APKIKTPLKDIIIKAGK-----ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 327
P ++ L+ E++ G P P + W ++G ++ G
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 328 YHTIVNTVNTKRSDSGTYHLELRNTSGRD---EGSFTVTVLETISKTNTTTIS 377
I N K D+GTY N+ G E LE +T+S
Sbjct: 63 SLLINNP--NKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 113
Score = 44.8 bits (106), Expect = 3e-04
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 9/135 (6%)
Query: 649 IPDLTKGQEYEFRVIAVNEAG----PSEPSDASDIIMCKQRFLAPKIKT-PLKDIIIKAG 703
I + K + + N P+ PKI+ + + + G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
+ +E +G P P + W + R + I+ N ++ D+G+Y
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRHK----SNGILEIPNFQQEDAGSYECV 276
Query: 764 LRNTSGRDEGSFTIV 778
N+ G++ +
Sbjct: 277 AENSRGKNVAKGQLT 291
Score = 44.4 bits (105), Expect = 3e-04
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEV 720
IA N G + S + +L + ++ G+ +L
Sbjct: 81 IATNSFG----TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPP-PHSGELSY 135
Query: 721 TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
W + D+ R G I ++SD G Y + NT +
Sbjct: 136 AWIFNEYPSYQDNRRFVSQETGNLYI---AKVEKSDVGNYTCVVTNTVTNHK 184
Score = 44.1 bits (104), Expect = 4e-04
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 10/120 (8%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEV 305
IA N G + S + ++ + ++ G+ +L
Sbjct: 81 IATNSFG----TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPP-PHSGELSY 135
Query: 306 TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
W + D+ R G I ++SD G Y + NT + T L
Sbjct: 136 AWIFNEYPSYQDNRRFVSQETGNLYI---AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL 192
Score = 43.3 bits (102), Expect = 8e-04
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 688 APKIKTPLKDIIIKAGK-----ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 742
P ++ L+ E++ G P P + W ++G ++ G
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 743 YHTIVNTVNTKRSDSGTYHLELRNTSGRD 771
I N K D+GTY N+ G
Sbjct: 63 SLLINNP--NKTQDAGTYQCIATNSFGTI 89
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 110 bits (277), Expect = 2e-26
Identities = 46/195 (23%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEIDIMNQLHHPKLIN 1749
+ + IG+G+FG V++ + A K + V+ ++L + E+ ++ + H ++
Sbjct: 28 VGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 1750 LHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIH 1809
++ ++ ++ G L+ + A + K ++I+ RQ + ++H K+IIH
Sbjct: 85 FMGYS-TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIH 143
Query: 1810 LDVKPENIMCQTRNSTNVKMIDFGLAT---KLDPNEVVKISTGTAEFAAPEIVEREPVGF 1866
D+K NI N VK+ DFGLAT + + + +G+ + APE++ +
Sbjct: 144 RDLKSNNIFLHEDN--TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNP 201
Query: 1867 YT---DMWAVGVLAY 1878
Y+ D++A G++ Y
Sbjct: 202 YSFQSDVYAFGIVLY 216
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6
R beta subunit, signaling protein; 2.00A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 108 bits (270), Expect = 2e-26
Identities = 38/217 (17%), Positives = 60/217 (27%), Gaps = 18/217 (8%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
PP+ P + W+ T + ++ ++ T +
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTS 63
Query: 1284 FTV-HDLREGGKYEFRVIAINEAGPGKPS----KPTDIVQCKEQKRKPDPPEAPKVDRI- 1337
TV + E V A N G P KP+PP V
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK-------VKPNPPHNLSVINSE 116
Query: 1338 -TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW--VDANSVPVPNPVHTVGNLSEGEE 1394
+ L+W P +K I + K W + TV +L E
Sbjct: 117 ELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTE 176
Query: 1395 YTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLS 1431
Y FR+ + E G S ++P + S
Sbjct: 177 YVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213
Score = 89.7 bits (222), Expect = 7e-20
Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 16/200 (8%)
Query: 490 PPEGPLEVSNVTKESCKL--SWRVPVDDGGAPILHYIIEKMDISRGTW---SDAGMTVSL 544
PPE P +S + E K+ W + ++ ++ + + S
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSC 64
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK--DWGED 602
D + V+A N++G+ + +P+ P +V +
Sbjct: 65 TVDYSTVYFVN-IEVWVEAENALGKV---TSDHINFDPVYKVKPNPPHNLSVINSEELSS 120
Query: 603 FVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWM--NALEVPANKTDVKIPDLTKGQEYEF 660
+ L W P I Y IQ + K W + + ++ + DL EY F
Sbjct: 121 ILKLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Query: 661 RVIAVNEAGPSEPSDASDII 680
R+ + E G SD S+
Sbjct: 180 RIRCMKEDGKGYWSDWSEEA 199
Score = 87.0 bits (215), Expect = 6e-19
Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 26/214 (12%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNA---TLMWDRPRTDGGSKIQGYKVEFR-STRTATDCGL-- 1192
P + PP +P+ + N WD R + ++ +T DC
Sbjct: 1 PGSSGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKR 58
Query: 1193 -GYQQCHADVGQTPHG---WWLQDSRIQGRIQSP---FDP-----PDAPSQPEVTGYS-- 1238
C D W++ G++ S FDP P+ P V
Sbjct: 59 DTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL 118
Query: 1239 PSSVSLAWNPPANHGGRPITGYYVEKRERGGEW---LRANNYPTTNLNFTVHDLREGGKY 1295
S + L W P+ I Y ++ R + + + +T +FTV DL+ +Y
Sbjct: 119 SSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 177
Query: 1296 EFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
FR+ + E G G S ++ + +P
Sbjct: 178 VFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE 211
Score = 79.3 bits (195), Expect = 2e-16
Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 76 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT--- 130
PPE P S I + EW R+ ++ ++ T ++ T
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEW-ATHKFADCKAKRDTPTS 63
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT--DWGKD 188
T + + + V+A N +G+ K P+ P +V +
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---PNPPHNLSVINSEELSS 120
Query: 189 HVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS--VPDLKEGEEYEF 245
+ L WT P I +Y I+ + K W + T +S V DLK EY F
Sbjct: 121 ILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Query: 246 RVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
R+ + + G G S S + P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRP 208
Score = 78.9 bits (194), Expect = 4e-16
Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 9/166 (5%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF-- 1578
P P+NL G + W R+ TN+ ++ + + + TP
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHK-FADCKAKRDTPTSC 64
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPA-LTIDPIKAKHPFDVPGAPGAPKGVDSTEDSI 1637
+ E V AEN G + DP+ P + P + +
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKP-NPPHNLSV-INSEELSSIL 122
Query: 1638 SLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
L W+ P I +Y ++ R W + T +T
Sbjct: 123 KLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFT 167
Score = 63.5 bits (154), Expect = 6e-11
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 13/151 (8%)
Query: 1044 PPQGPLDVSDITPESCSL--SWKPPLDDGGSPITNYVVEKYESATGFWS--KLSSFVRSP 1099
PP+ P ++S I E + W + TN+ + K E AT ++ K +
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTL-KSEWATHKFADCKAKRDTPTS 63
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQI--VDWDTN 1157
+ V AEN G ++ K P+PP + + ++
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---PNPPHNLSVINSEELSS 120
Query: 1158 NATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
L W P ++ Y +++R+ +T
Sbjct: 121 ILKLTWTNPSIKSVIILK-YNIQYRTKDAST 150
Score = 58.8 bits (142), Expect = 2e-09
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 1040 DKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF--- 1095
KP+PP + S+ L+W P I Y ++ WS++
Sbjct: 102 VKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTA 160
Query: 1096 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
++ V L+ +Y FR+R + G + + T D P +
Sbjct: 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI---TYEDRPSKE 211
Score = 57.3 bits (138), Expect = 7e-09
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 1499 RLQLKNPAG---FDTATLHVRVLDRPHPPENLHAD--EFAGDSLTLYWTPPRDNGGSEIT 1553
++ +N G D +P+PP NL E L L WT P I
Sbjct: 79 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS-IKSVIIL 137
Query: 1554 NYVVEKKDYNSTVWTKVSSYVTTPF---VRVRNLAIGSTYEFRVMAENQYGLSKPALTID 1610
Y ++ + +++ W+++ T V++L + Y FR+ + G + +
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Query: 1611 PIKAKHPFDVPGAP 1624
D P
Sbjct: 198 EASGITYEDRPSKE 211
Score = 43.8 bits (103), Expect = 2e-04
Identities = 28/201 (13%), Positives = 44/201 (21%), Gaps = 56/201 (27%)
Query: 815 DPPEAPK-VDRITKD--SVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVD-ANSVPVPNP 870
PPE PK + I + + W + + ++ + D P
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTS 63
Query: 871 VHTLLSIGYLSQ------------------------------------FLAEEKKHGKLL 894
S Y + E+ L
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILK 123
Query: 895 L--------AKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRA 946
L + + Y I+ R + TV L T Y FR+R
Sbjct: 124 LTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 183
Query: 947 ENLQGL------SEPITTKEP 961
G SE +
Sbjct: 184 MKEDGKGYWSDWSEEASGITY 204
Score = 41.5 bits (97), Expect = 0.001
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 812 RKPDPPEAPKVDRI--TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPN 869
KP+PP V + L+W P +K I + K W +
Sbjct: 102 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 161
Query: 870 PVHT 873
+
Sbjct: 162 TRSS 165
Score = 37.3 bits (86), Expect = 0.030
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 428 RYIIEMAEYGLDNWKTVPGF---CPKEFFTVKGLTEGKKYVFRIRTENMYGA---SEPLD 481
+Y I+ W +P + FTV+ L +YVFRIR G S+ +
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Query: 482 PLFPD-KPSPPEGPLEV 497
P
Sbjct: 198 EASGITYEDRPSKEPSF 214
Score = 36.5 bits (84), Expect = 0.058
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 1885 DTNWRVAN--DYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ W D ++ V L +Y FR++ G S S+E
Sbjct: 148 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE 198
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 113 bits (283), Expect = 2e-26
Identities = 53/397 (13%), Positives = 109/397 (27%), Gaps = 91/397 (22%)
Query: 2008 QAAPRFVIKP-QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
P + + ++ C P+ W N++ +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73
Query: 2067 TFYSSLRKLQIDRF---------------SIQDTSFDRRQAAPRFVIKPQSAFC-YEGQS 2110
T R ++ + + +P + + EG
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAP 133
Query: 2111 VKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYA-GDDYTFVINRTKMED-RGEYIIR 2167
+ C + +P + W ++ E KR + G + + ++D + +Y
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQ---DKRVSQGHNGDLYFSNVMLQDMQTDYSCN 190
Query: 2168 AENHYGYREE-------VVFLNVQRKYDLPVIHYKNHRRANKY----------------- 2203
A H+ + + V P Y +++
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP 250
Query: 2204 --DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
D+ W ++ PS+ + + L+I + EDSG Y C A N G + ++
Sbjct: 251 TPDIAWYKKGGDL-PSDKAKFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Query: 2262 LVQ---------------------------------VSWYKDGNPVSDDPATYQFTQIGQ 2288
V+ V W +G P+ P G
Sbjct: 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD 367
Query: 2289 TYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNVV 2321
T + T + Y S + G ++A ++V+
Sbjct: 368 T--IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 65.3 bits (159), Expect = 1e-10
Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 15/153 (9%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIV------EEQPNKPVMDLSGVRDITVKAGEDFSIHVP 1449
+ A ++ K + V E+ + V G D +
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 1450 FMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1509
P P W+ + + + +L + N D G+Y N G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAKFE----NFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 1510 TATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
T+ VRV P+ P+NL G+ L
Sbjct: 302 RHTISVRVKAAPYWLDEPKNLILAP--GEDGRL 332
Score = 61.4 bits (149), Expect = 2e-09
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPN---KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+A N+ G+ + V V+ P +P +++ + GED + P+P
Sbjct: 293 LASNKMGSIR---HTISVRVKAAPYWLDEP-------KNLILAPGEDGRLVCRANGNPKP 342
Query: 1457 AAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVR 1516
W N + + +++ + +++ +++Q S Y+ N G+ A V
Sbjct: 343 TVQWMVNGEPLQSAPPNPNRE--VAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Query: 1517 VLD 1519
VLD
Sbjct: 401 VLD 403
Score = 59.9 bits (145), Expect = 5e-09
Identities = 54/266 (20%), Positives = 86/266 (32%), Gaps = 61/266 (22%)
Query: 122 VPMGDVSGTYT-RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 180
V + D+ Y+ A H + K+ + + ++P F P
Sbjct: 178 VMLQDMQTDYSCNARF-HFTHTIQQKNPFTLKVLTTRGVAERTP-----SFMYPQGTASS 231
Query: 181 TVTDWGKDHVDLE------------WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 228
+ G D + LE W K GG P +KA N
Sbjct: 232 QMVLRGMD-LLLECIASGVPTPDIAWY---KKGGDL-------------PSDKAKFENFN 274
Query: 229 ----ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDII 284
IT S D GE Y +A NK G + + V K AP K++I
Sbjct: 275 KALRITNVSEED--SGE-YF--CLASNKMGS---IRHTISVRVK---AAPYWLDEPKNLI 323
Query: 285 IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRS 340
+ G+ + + G P P V W ++G+ L++ + +T+ S
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN------PNREVAGDTIIFRDTQIS 377
Query: 341 DSGTYHLELRNTSGRDEGSFTVTVLE 366
Y N G + V+VL+
Sbjct: 378 SRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 49.5 bits (118), Expect = 9e-06
Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 673 PSDASDIIMCKQRFLAPKI-KTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT 731
P D S Q P I K KD I+ + +E + G P P WT + +
Sbjct: 4 PMDPSIQNELTQ---PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60
Query: 732 --DSVRTTVTSIGYHTI-VNTVNTKRSDSGTYHLELRNTSGRDE 772
D + G I + G Y RN G
Sbjct: 61 AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL 104
Score = 48.7 bits (116), Expect = 1e-05
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 659 EFRVIAVNEAGPSEPSDASDIIM----CKQRFLAPKIKTP---LKDIIIKAGKILNVEIQ 711
++ A + + P P ++ G L +E
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 712 FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 771
G P P++ W G +L +D + ++ + N DSG Y N G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAKFEN----FNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 772 EGSFTIV 778
+ ++
Sbjct: 302 RHTISVR 308
Score = 48.3 bits (115), Expect = 2e-05
Identities = 23/149 (15%), Positives = 37/149 (24%), Gaps = 20/149 (13%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
P I ++ +D V ++ I P P+ W N + +
Sbjct: 14 TQPPTITKQSA----------KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 1473 RVHKQLTMNSA---SLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVLDR--PHPP 1524
+ G+Y+ +N G L V
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123
Query: 1525 ENLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
+ + E G LTL PP I
Sbjct: 124 DPVVVQE--GAPLTLQCNPPPGLPSPVIF 150
Score = 47.9 bits (114), Expect = 3e-05
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP K++I+ G+ + + G P P V W ++G+ L++ +
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN------PNREVA 365
Query: 748 NTV----NTKRSDSGTYHLELRNTSGRDEGS 774
+T+ S Y N G +
Sbjct: 366 GDTIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
Score = 45.2 bits (107), Expect = 2e-04
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVT 306
A NK G ++ V+ P + K L ++++ G L ++ G P P +
Sbjct: 95 FARNKFGTALSNRIRLQVSKSPLWP----KENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG---RDEGSFTVT 363
W E T R + G N + Y R + + FT+
Sbjct: 151 WMSSSMEPITQDKRVSQGHNGDLYFSNV--MLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 364 VLETIS 369
VL T
Sbjct: 209 VLTTRG 214
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 111 bits (279), Expect = 3e-26
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 33/208 (15%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERK-TGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQ 1741
Y+ + EIG GA+G V + R+ K G A K + V +E IR E+ ++
Sbjct: 11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT--GEEGMPLSTIR-EVAVLRH 67
Query: 1742 LH---HPKLINLHDAF-----EDDDEMVLIFEFLSG--GELFERITAPDYKMSEAEVINY 1791
L HP ++ L D + + ++ L+FE + +++ P + + +
Sbjct: 68 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEP--GVPTETIKDM 125
Query: 1792 MRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA-TKLDP----NEVVKI 1846
M Q+ + +H ++H D+KP+NI+ + +K+ DFGLA + VV
Sbjct: 126 MFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG--QIKLADFGLARIYSFQMALTSVVV-- 181
Query: 1847 STGTAEFAAPEIVEREPVGFYTDMWAVG 1874
T + APE++ + D+W+VG
Sbjct: 182 ---TLWYRAPEVLLQSSYATPVDLWSVG 206
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide
serine/threonine-protein kinase, transferase, signaling
Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB:
4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 110 bits (276), Expect = 3e-26
Identities = 44/204 (21%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI-------RKEIDIM 1739
+ + ++IG G FG+VH+ R K ++ A K + + + + + ++E+ IM
Sbjct: 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM 77
Query: 1740 NQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
+ L+HP ++ L+ + ++ EF+ G+L+ R+ + + + + M + +
Sbjct: 78 SNLNHPNIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGI 135
Query: 1800 KHMHEKN--IIHLDVKPENI---MCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA 1854
++M +N I+H D++ NI K+ DFGL+ + V G ++
Sbjct: 136 EYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS--VHSVSGLLGNFQWM 193
Query: 1855 APEI--VEREPVGFYTDMWAVGVL 1876
APE E E D ++ ++
Sbjct: 194 APETIGAEEESYTEKADTYSFAMI 217
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal, muscle
protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A
1tnm_A 1tnn_A
Length = 106
Score = 103 bits (259), Expect = 4e-26
Identities = 30/102 (29%), Positives = 44/102 (43%)
Query: 2084 DTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKR 2143
+ A R + KP+S YEG+S +F+C PT+TW Q L S +
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 2144 YAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQR 2185
TF I+ + D G Y + EN G +E L +Q+
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 79.3 bits (196), Expect = 1e-17
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V WL + + S ++ + T +I+ + D G Y+ N EG+ + TL +Q
Sbjct: 46 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 73.9 bits (182), Expect = 1e-15
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 2001 DTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKR 2060
+ A R + KP+S YEG+S +F+C PT+TW Q L S +
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQDT 2085
T +I D
Sbjct: 65 TTKYKST-------FEISSVQASDE 82
Score = 68.9 bits (169), Expect = 6e-14
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+A +I T + + + G+ GEP P VTW G+ L T + T+ T
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + SD G Y + + N+ G+ E FT+T+ +
Sbjct: 73 E-ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 61.2 bits (149), Expect = 3e-11
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
LA +I T + + + G+ GEP P VTW G+ L T + T+ T
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + SD G Y + + N+ G+ E FT+
Sbjct: 73 E-ISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 53.9 bits (130), Expect = 1e-08
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
R +TV GE P P W ++ S R T ++ + + Q S
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISSVQAS 80
Query: 1494 DGGQYRLQLKNPAGFD--TATLHVR 1516
D G Y + ++N G TL ++
Sbjct: 81 DEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 40.4 bits (95), Expect = 6e-04
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
V+W + G +S +Q T +I S D G YS + G A F+L
Sbjct: 45 TVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Query: 2320 V 2320
+
Sbjct: 104 I 104
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex,
receptor tyrosine kinas binding, immunoglobulin domain,
kinase, membrane, nucleotid binding; HET: NAG; 2.10A
{Homo sapiens}
Length = 241
Score = 108 bits (271), Expect = 4e-26
Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 37/225 (16%)
Query: 2092 AAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAG 2146
AP + + + +V+F C TP+++W N +E + + +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 2147 DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY--- 2203
++ V+ DRG Y EN +G + L+V + I + AN+
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI-LQAGLPANQTAVL 128
Query: 2204 ----------------DVIWLHNNKE------------IKPSNDFAYSSVAHVHTLKIAE 2235
+ WL + + + + SV L++A
Sbjct: 129 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188
Query: 2236 IFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPAT 2280
+ D G Y C A N G + + L V + V D A
Sbjct: 189 VSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAG 233
Score = 93.1 bits (231), Expect = 9e-21
Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 44/214 (20%)
Query: 2009 AAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
AP + + + +V+F C TP+++W N +E + +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 2065 DYTFYSSLRKLQIDRFSIQDT---------SFDRRQA-------------APRFVIKPQS 2102
L ++ D F + P +
Sbjct: 70 QQW------SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN 123
Query: 2103 AFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVK------------FMKRYAGDDYT 2150
G V+F C+V + A P + W + + V ++ D
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ D GEY+ RA N G E+ +L+V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
Score = 69.2 bits (169), Expect = 1e-12
Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 54/171 (31%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAH-VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+ WL N +E + + + H +L + + P D G YTC N G + TL
Sbjct: 46 SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Query: 2263 VQ--------------------------------------VSWYK-----------DGNP 2273
V + W K DG P
Sbjct: 106 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP 165
Query: 2274 VSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
++ + ++++ + + D G+Y + +G AF L+V
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 64.6 bits (157), Expect = 4e-11
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 259 SKASAPV-TCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTD 317
+ V T P + P+ K + + A + G P P ++W +G+E + +
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE 59
Query: 318 S-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
+ ++V + SD G Y + N G ++T+ VLE
Sbjct: 60 HRIGGIKLRHQQWSLV-MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 109
Score = 62.3 bits (151), Expect = 2e-10
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 18/153 (11%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQ-PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1458
+ N+ G+ Q+ + V E+ P++P++ + T G D H + QP
Sbjct: 90 VVENKFGSIR---QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI 146
Query: 1459 FWF-----------ANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG 1507
W + + + L + N DGG+Y + N G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Query: 1508 FDTATLHVRVLDRPHPPENLHADEFAGDSLTLY 1540
+ V E L A ++ +++
Sbjct: 207 VAEKAFWLSVHGPRAAEEELVE---ADEAGSVH 236
Score = 59.6 bits (144), Expect = 2e-09
Identities = 26/132 (19%), Positives = 39/132 (29%), Gaps = 17/132 (12%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH 1475
P + + + V A P P P+ W N
Sbjct: 12 PYWTRPERMDK-------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH--------PPENL 1527
+L SLV+++ SD G Y ++N G T + VL+R P N
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124
Query: 1528 HADEFAGDSLTL 1539
A G +
Sbjct: 125 TAVL--GSDVEF 134
Score = 52.6 bits (126), Expect = 4e-07
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 685 RFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGY 743
+ P+ K + + A + G P P ++W +G+E + + +
Sbjct: 13 YWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71
Query: 744 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
++V + SD G Y + N G ++T+
Sbjct: 72 WSLV-MESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Score = 46.9 bits (111), Expect = 3e-05
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 12/130 (9%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ NK G + V + + G + + + P + W
Sbjct: 90 VVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 308 T----IDGKELKTDSVRTTVTSIGYHTIVNTV-------NTKRSDSGTYHLELRNTSGRD 356
++G ++ D + + N D G Y N G
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208
Query: 357 EGSFTVTVLE 366
E +F ++V
Sbjct: 209 EKAFWLSVHG 218
Score = 43.0 bits (101), Expect = 5e-04
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVK 2056
P + G V+F C+V + A P + W + + V
Sbjct: 111 PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160
Score = 43.0 bits (101), Expect = 6e-04
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
+SW K+G + Q + + + S D G Y+ + G I ++L+
Sbjct: 46 SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Query: 2320 VV 2321
V+
Sbjct: 106 VL 107
Score = 41.1 bits (96), Expect = 0.002
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
+ N+ G + ++ + + G + + + P + W
Sbjct: 90 VVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 723 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFT 776
K ++ + + Y T V S L L N S RD G +
Sbjct: 149 L---KHVEVNGSKVGPDGTPYVT-VLKSWISESVEADVRLRLANVSERDGGEYL 198
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 109 bits (275), Expect = 5e-26
Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPK 1746
Y ++ E +G GAFGVV + + R A K I E++ E+ +++++HP
Sbjct: 7 YKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQI--ESESERKAFIVELRQLSRVNHPN 62
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERI--TAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
++ L+ A + + L+ E+ GG L+ + P + A +++ Q + V ++H
Sbjct: 63 IVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHS 120
Query: 1805 ---KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVER 1861
K +IH D+KP N++ T +K+ DFG A + + + G+A + APE+ E
Sbjct: 121 MQPKALIHRDLKPPNLL-LVAGGTVLKICDFGTACDI--QTHMTNNKGSAAWMAPEVFEG 177
Query: 1862 EPVGFYTDMWAVGVL 1876
D+++ G++
Sbjct: 178 SNYSEKCDVFSWGII 192
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 115 bits (289), Expect = 6e-26
Identities = 53/383 (13%), Positives = 104/383 (27%), Gaps = 102/383 (26%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
PR I+ +++ TCR L W N + + D
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 2070 SSLRKLQIDRFSIQDT-----------------SFDRRQAAPRFV-----IKPQSAFCYE 2107
+ L I + DT + + +P +
Sbjct: 87 T----LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENK 142
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD-DYTFVINRTKMEDRGEYII 2166
++V C + K+ V R + D F I + G
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPE--KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 200
Query: 2167 RAENHYGYREEVVFLNVQRKYDLP--VIHYKNHRRAN-----------------KYDVIW 2207
A+ + + ++++ V Y + V+ + + D W
Sbjct: 201 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 260
Query: 2208 LHNNKEIKP----SNDFAYSSVAHVH----TLKIAEIFPEDSGVYTCEAFNDEGESFSSC 2259
+ + + + + D S + + TL I + D G+YTC A + +S
Sbjct: 261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 320
Query: 2260 TLLV------------------------------------QVSWYKDGNPVSDDPATYQF 2283
+ V ++ WYK+G P+ +
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH----- 375
Query: 2284 TQIGQTYKMKILSTTLDDVGQYS 2306
I + + I+ + D G Y+
Sbjct: 376 -TIKAGHVLTIMEVSERDTGNYT 397
Score = 107 bits (269), Expect = 2e-23
Identities = 31/307 (10%), Positives = 73/307 (23%), Gaps = 70/307 (22%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPT--LTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ ++V C + + + +
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRI----------S 178
Query: 2069 YSSLRKLQIDRFSIQD---------------------TSFDRRQAAPRFVIKPQSAFCYE 2107
+ S + I + I + +
Sbjct: 179 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238
Query: 2108 GQSVKFTCRVIAIATPTL--TWFHNNQELK--------QSVKFMKRYAGDDYTFVINRTK 2157
G+ + C + W + + + + + T I+
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN---------------- 2201
D+G Y A + ++ F+ V K P + + + +
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEK---PFVAFGSGMESLVEATVGERVRIPAKYL 355
Query: 2202 ---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSS 2258
++ W N ++ + ++ H L I E+ D+G YT N + S
Sbjct: 356 GYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQS 410
Query: 2259 CTLLVQV 2265
+ + V
Sbjct: 411 HVVSLVV 417
Score = 107 bits (267), Expect = 3e-23
Identities = 49/430 (11%), Positives = 101/430 (23%), Gaps = 124/430 (28%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-------- 2061
G+ V+ + + P + W+ N L+ + +
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVS 389
Query: 2062 ---AGDDYTFY-SSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRV 2117
G+ YT ++ + + + Q + +I P ++ G + TC V
Sbjct: 390 ERDTGN-YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY-QYGTTQTLTCTV 447
Query: 2118 IAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTF------------------------- 2151
AI P + W+ +E + + Y
Sbjct: 448 YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALI 507
Query: 2152 --------VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ---RKYDLPVIHYKNHRRA 2200
+ Y A N G E V+ +V P +
Sbjct: 508 EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESV 567
Query: 2201 N---------KYDVIWLHNNKEIKPSNDFAY--------------------SSVAHVHTL 2231
+ ++ W + P + +S + +
Sbjct: 568 SLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIM 627
Query: 2232 KIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV-------------------------- 2265
++ +D G Y C A + + + + V
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVS 687
Query: 2266 -----------SWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MG 2310
W+KD + +D + I +D G Y+ Q +G
Sbjct: 688 CTASGNPPPQIMWFKDNETLVEDS---GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744
Query: 2311 GIIAAFSLNV 2320
+
Sbjct: 745 CAKVEAFFII 754
Score = 106 bits (266), Expect = 4e-23
Identities = 42/343 (12%), Positives = 90/343 (26%), Gaps = 87/343 (25%)
Query: 2008 QAAPRFVIKPQSAFCY---EGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAG 2063
P+ K + G + TC V AI P + W+ +E +
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477
Query: 2064 DDYTFYSSLRKLQI----------DRFSIQDTSFDRR----------------------- 2090
+ Y ++F++ +
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Query: 2091 ----------QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL------ 2134
P ++P E +SV C LTW+ +
Sbjct: 538 RGERVISFHVTRGPEITLQPDMQP-TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596
Query: 2135 --------------KQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVF 2180
K + D + ++D+G+Y+ A++ + V
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV 656
Query: 2181 LNVQRKYDLP---VIHYKNHRRAN--------------KYDVIWLHNNKEIKPSNDFAYS 2223
+ + + +N + ++W +N+ + +
Sbjct: 657 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 716
Query: 2224 SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
L I + ED G+YTC+A + G + +++ +
Sbjct: 717 D--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 105 bits (264), Expect = 6e-23
Identities = 48/428 (11%), Positives = 91/428 (21%), Gaps = 131/428 (30%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTL--TWFHNNQELKQSVKFMKRYA 2062
+ + G+ + C + W + + + + +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 2063 GD-DYTFYSSLRKLQIDRFSIQDT---------SFDRRQA--------APRFVIKPQSAF 2104
L L ID + D ++ P
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 2105 CYE---GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
E G+ V+ + + P + W+ N L+ + + I D
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDT 393
Query: 2162 GEYIIRAENHYGYREEVVFLNVQ---------RKYDLPVIHYKNHRRAN----------K 2202
G Y + N ++ +++ + PV Y+
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 2203 YDVIWLHNNKEI---------------------------------KPSNDFAYSSVAHVH 2229
+ + W +E N FA +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ------------------------- 2264
+ S +Y CEA N G + V
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA 573
Query: 2265 -------VSWYKDGNPVSDDP-------------------ATYQFTQIGQTYKMKILSTT 2298
++WYK G AT M++ + +
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633
Query: 2299 LDDVGQYS 2306
L D G Y
Sbjct: 634 LQDQGDYV 641
Score = 96.0 bits (238), Expect = 7e-20
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 41/228 (17%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS---------VKFM 2058
P ++P E +SV C LTW+ + K +
Sbjct: 548 TRGPEITLQPDMQP-TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 2059 KRYAGDDYTFYSS----LRKLQIDRFSIQD----------------TSFDRR-----QAA 2093
+ T +S+ + +++ S+QD R+ + A
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA 666
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI 2153
P ++ G+S++ +C P + WF +N+ L + + I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTI 724
Query: 2154 NRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI----HYKNH 2197
R + ED G Y +A + G + F ++ + + H+ +H
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHHH 772
Score = 86.0 bits (212), Expect = 9e-17
Identities = 54/327 (16%), Positives = 98/327 (29%), Gaps = 44/327 (13%)
Query: 69 QWLHIPSPP--EGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW----- 121
W P + ++T EWR+ D G + + + + G+
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516
Query: 122 --VPMGDVSGTYT-RAENLIEGHD---YNFRVKAVNKI----------GESLPLVCQSPI 165
+ +VS Y A N + G +F V +I ES+ L C +
Sbjct: 517 LVIQAANVSALYKCEAVNKV-GRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA-- 573
Query: 166 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV 225
+T W K + K + +
Sbjct: 574 -----DRST----FENLT-WYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTND 623
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIII 285
+ + + ++ ++ +A ++ +T R VAP I L++
Sbjct: 624 ILIME---LKNASLQDQGDYVCLAQDRKTKKR-HCVVRQLTVLER-VAPTITGNLENQTT 678
Query: 286 KAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTY 345
G+ + V G PPP++ W D + L DS TI ++ D G Y
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI---RRVRKEDEGLY 735
Query: 346 HLELRNTSGRDEGSFTVTVLETISKTN 372
+ + G + + KTN
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKTN 762
Score = 79.0 bits (194), Expect = 1e-14
Identities = 39/330 (11%), Positives = 83/330 (25%), Gaps = 52/330 (15%)
Query: 1233 EVTGY-SPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTN---------- 1281
V P + W P V EW ++ N
Sbjct: 446 TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFA 505
Query: 1282 ---------LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ Y + A+N+ G G+ + R P+ P
Sbjct: 506 LIEGKNKTVSTLVIQAANVSALY--KCEAVNKVGRGERVISFHV------TRGPEITLQP 557
Query: 1333 KVDRITKDSVTLSWR----PP-----KHDGGARIKGYIVQKRKKGGDWVDA----NSVPV 1379
+ ++SV+L G + ++ + +D N+
Sbjct: 558 DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617
Query: 1380 PNPVHTVGNL-----SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVR 1434
N + + + S ++ + +A + + +
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR---HCVVRQLTVLERVAPTITGNLE 674
Query: 1435 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1494
+ T GE + P P WF ++ + + L + +L ++ ++ D
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS---GIVLKDGNRNLTIRRVRKED 731
Query: 1495 GGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
G Y Q + G +
Sbjct: 732 EGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 74.4 bits (182), Expect = 3e-13
Identities = 45/309 (14%), Positives = 95/309 (30%), Gaps = 27/309 (8%)
Query: 483 LFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV 542
+ + P + +VT WR D G + ++ ++ +
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE-----VNKNQFALIEGKNKT 513
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKD---- 598
+ Y + +AVN +G + V R +PT ++
Sbjct: 514 VSTLVIQAANVSALY--KCEAVNKVGRGER--VISFHVTRGPEITLQPDMQPTEQESVSL 569
Query: 599 ----WGEDFVDLAW-KPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV----KI 649
F +L W K + + + + W + +N T+ ++
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 650 PDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVE 709
+ + + ++ +A + + +AP I L++ G+ + V
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLT--VLERVAPTITGNLENQTTSIGESIEVS 687
Query: 710 IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG 769
G PPP++ W D + L DS TI ++ D G Y + + G
Sbjct: 688 CTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI---RRVRKEDEGLYTCQACSVLG 744
Query: 770 RDEGSFTIV 778
+ +
Sbjct: 745 CAKVEAFFI 753
Score = 69.4 bits (169), Expect = 1e-11
Identities = 27/262 (10%), Positives = 63/262 (24%), Gaps = 25/262 (9%)
Query: 1293 GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHD 1352
G Y + + D + +V + +
Sbjct: 99 GAY--KCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISN 156
Query: 1353 GGARIKGYIVQKRKKGGDWVDANSVPVPNPVH--TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ R +V + + T+ + A + +
Sbjct: 157 LNV-----SLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ- 210
Query: 1411 GKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWF--------- 1461
++V + LS I + GE ++ +
Sbjct: 211 --SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 268
Query: 1462 ANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ D T+ ++ ++L + RSD G Y + + VRV ++P
Sbjct: 269 HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 328
Query: 1522 HPPENLHADEF----AGDSLTL 1539
+ G+ + +
Sbjct: 329 FVAFGSGMESLVEATVGERVRI 350
Score = 65.2 bits (158), Expect = 2e-10
Identities = 41/314 (13%), Positives = 98/314 (31%), Gaps = 39/314 (12%)
Query: 481 DPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGM 540
F S G + ++ ++ + + + + + + G
Sbjct: 122 RSPFIASVSDQHGVVYITENKNKTVVIPCLGS----ISNLNVSLCARYP--EKRFVPDGN 175
Query: 541 TVSLFYDVPRLIH--RKEY--LFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTV 596
+S I Y + +A + ++ V +D +P
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 597 KDWGEDF-------------VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPAN 643
GE +D W+ P + K + G+ E+
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS-------EMKKF 288
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAG 703
+ + I +T+ + + A + + S + ++ + G
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKK---NSTFVRVHEKPFVAFGSGMESLVEATVG 345
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
+ + + +++G PPPE+ W +G L+++ T+ + TI + D+G Y +
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNH---TIKAGHVLTI---MEVSERDTGNYTVI 399
Query: 764 LRNTSGRDEGSFTI 777
L N +++ S +
Sbjct: 400 LTNPISKEKQSHVV 413
Score = 64.8 bits (157), Expect = 3e-10
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 28/234 (11%)
Query: 145 FRVKAVNKIGE---SLPLVCQSPITAKDPFGRPD-----RPGQP-----TVTDWGKDHVD 191
+A + +V D P G+ T +D
Sbjct: 198 VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 257
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN 251
W P + K + G K + I + D +G + A +
Sbjct: 258 FNWEYPSSKHQHKKLV-NRDLKTQSGSEMKKFLSTLTIDGVTRSD--QGL---YTCAASS 311
Query: 252 KGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDG 311
K S V + + G+ + + +++G PPPE+ W +G
Sbjct: 312 GLMT---KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG 368
Query: 312 KELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
L+++ T+ + TI + D+G Y + L N +++ S V+++
Sbjct: 369 IPLESNH---TIKAGHVLTI---MEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 58.6 bits (141), Expect = 2e-08
Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 22/181 (12%)
Query: 660 FRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 719
+ + A PS + D P++ + IKA ++I G+ +
Sbjct: 12 WLCVETRAASVGLPSVSLD---------LPRLSIQKDILTIKANT--TLQITCRGQRDLD 60
Query: 720 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI-V 778
W + + T + + + +D+G Y R T +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 779 PDHLKNLWNTKKSLHP----------VLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKD 828
+ + V+ C G+ + ++ +R P+ P +RI+ D
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Query: 829 S 829
S
Sbjct: 181 S 181
Score = 58.6 bits (141), Expect = 2e-08
Identities = 17/151 (11%), Positives = 39/151 (25%), Gaps = 20/151 (13%)
Query: 1396 TFRVIAVNEAGNSEPG-KQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFP 1454
+ + A P P + ++ +T+KA I
Sbjct: 11 LWLCVETRAASVGLPSVSLDLPRLSIQKD-----------ILTIKANTTLQITCR--GQR 57
Query: 1455 QPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLH 1514
W N S + + +L + +D G Y+ + ++
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 1515 VRVLDRPH------PPENLHADEFAGDSLTL 1539
V+ P ++ E ++ +
Sbjct: 118 VQDYRSPFIASVSDQHGVVYITENKNKTVVI 148
Score = 58.2 bits (140), Expect = 3e-08
Identities = 28/232 (12%), Positives = 59/232 (25%), Gaps = 16/232 (6%)
Query: 145 FRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP 204
++ S+ V + D+ G +T+ V + S
Sbjct: 101 YKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS----ISN 156
Query: 205 ISQYIIEKKPKYGPWEKACIVPANITAT-SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
++ + + P+ + + ++P A + S
Sbjct: 157 LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ-SIMYI 215
Query: 264 PVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV 323
V R + +P I + G+ L + E + + + K +
Sbjct: 216 VVVVGYRI-YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN 274
Query: 324 TSIGYHTIVNTV---------NTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + RSD G Y + + S V V E
Sbjct: 275 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326
Score = 57.8 bits (139), Expect = 3e-08
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 11/122 (9%)
Query: 245 FRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 304
+ + G PS V+ P++ + IKA ++I G+ +
Sbjct: 12 WLCVETRAASVGLPS-----VSLDL----PRLSIQKDILTIKANT--TLQITCRGQRDLD 60
Query: 305 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
W + + T + + + +D+G Y R T V
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 365 LE 366
Sbjct: 121 YR 122
Score = 55.5 bits (133), Expect = 2e-07
Identities = 16/141 (11%), Positives = 33/141 (23%), Gaps = 21/141 (14%)
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYK-NHRRANKYD------- 2204
+ + ++ V L++ P + + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL------PRLSIQKDILTIKANTTLQITCR 54
Query: 2205 ----VIWLHNNKEIKPSNDFAY---SSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+ WL N + S TL I ++ D+G Y C + S
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 2258 SCTLLVQVSWYKDGNPVSDDP 2278
+ S +
Sbjct: 115 YVYVQDYRSPFIASVSDQHGV 135
Score = 49.4 bits (117), Expect = 2e-05
Identities = 52/460 (11%), Positives = 105/460 (22%), Gaps = 90/460 (19%)
Query: 1135 TAKFPFTVPDPPGQPQIVDWDTNNATLMWDRP-RTDGGSKIQGYKVEFRSTRTATDCGLG 1193
T P + + D + G+
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY------MISYAGM- 197
Query: 1194 YQQCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQP----------------EVTGY 1237
C A + S + + + D P
Sbjct: 198 VF-CEAKINDES-----YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTE 251
Query: 1238 SPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEF 1297
+ W P + R+ + + L + G Y
Sbjct: 252 LNVGIDFNWEYP----SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY-- 305
Query: 1298 RVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITK-DSVTLSWRPPKHDGGAR 1356
A + K + V+ E+ + T + V + A+
Sbjct: 306 TCAASSGLMT---KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP---------AK 353
Query: 1357 IKGY---IVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQ 1413
GY ++ K G +++N V T+ +SE + + VI N + Q
Sbjct: 354 YLGYPPPEIKWYKNGIP-LESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEK---Q 409
Query: 1414 SGPVIVEEQPNKPVMDLSGVRDI-TVKAGEDFSIHVPFMAFPQPAAF-WFANDSI----- 1466
S V + + + S + + + + G ++ A P P W+
Sbjct: 410 SHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469
Query: 1467 ---------------------------IDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYR 1499
I+ + + N + + Y+
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529
Query: 1500 LQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+ N G + V P +S++L
Sbjct: 530 CEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSL 569
Score = 47.1 bits (111), Expect = 8e-05
Identities = 14/139 (10%), Positives = 31/139 (22%), Gaps = 5/139 (3%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++ P + + + I K + +
Sbjct: 100 AYKCFYRETDL-ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 304 -EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
+ K D R + S TI + S +G E + + +
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSY---MISYAGMVFCEAKINDESYQSIMYI 215
Query: 363 TVLETISKTNTTTISSKNM 381
V+ + S +
Sbjct: 216 VVVVGYRIYDVVLSPSHGI 234
Score = 42.4 bits (99), Expect = 0.002
Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 36/157 (22%)
Query: 244 EFRVIAVNKGGPGEPS-KASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPP 302
+ VI N + S S V P+ + +P+ + G + PP
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPV--DSYQYGTTQTLTCTVYAIPP 452
Query: 303 PE-VTWTIDGKE--------------------------------LKTDSVRTTVTSIGYH 329
P + W +E ++ + + +
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
T+ V + S Y E N GR E + V
Sbjct: 513 TVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR 549
Score = 37.8 bits (87), Expect = 0.056
Identities = 8/102 (7%), Positives = 19/102 (18%), Gaps = 28/102 (27%)
Query: 2233 IAEIFPEDSGVYTCEAFNDEGESFSSCTLL----------------------------VQ 2264
+ ++ C S +L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 2265 VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
W + + + + + I +D G Y
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102
Score = 35.5 bits (81), Expect = 0.24
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 36/164 (21%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPS-DASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
I ++++ + VI N + S S ++ + + +P+ + G
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPV--DSYQYGTTQ 441
Query: 707 NVEIQFIGEPPPE-VTWTIDGKE--------------------------------LKTDS 733
+ PPP + W +E ++ +
Sbjct: 442 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 734 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + T+ V + S Y E N GR E +
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 109 bits (275), Expect = 9e-26
Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 19/208 (9%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKF--IPVSHNLEKELIRKEIDIMNQLHHP 1745
+H I+ + +E + P+S + +I M+
Sbjct: 62 EHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTK 121
Query: 1746 KLINLHDAFEDDDEMVLIFEFLSGGELFERITA--PDYKMSEAEVINYMRQVCEAVKHMH 1803
+ + + + L + + ++ Q+ EAV+ +H
Sbjct: 122 NTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH 181
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVK-------------ISTGT 1850
K ++H D+KP NI + VK+ DFGL T +D +E + GT
Sbjct: 182 SKGLMHRDLKPSNIFFTMDD--VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT 239
Query: 1851 AEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
+ +PE + D++++G++ +
Sbjct: 240 KLYMSPEQIHGNNYSHKVDIFSLGLILF 267
Score = 66.1 bits (161), Expect = 4e-11
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 1684 SSVY-DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDIMNQ 1741
+S Y ++ ++ +G G FGVV + + +A K I + + L +E + +E+ + +
Sbjct: 1 ASRYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK 60
Query: 1742 LHHPKLINLHDAFEDDDEM 1760
L HP ++ +A+ +
Sbjct: 61 LEHPGIVRYFNAWLETPPE 79
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 108 bits (271), Expect = 1e-25
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 18/203 (8%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI----RKEIDIMNQL 1742
+ + E IG G FG V+R G+ A K + + R+E + L
Sbjct: 6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAML 63
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
HP +I L + + L+ EF GG L ++ ++ ++N+ Q+ + ++
Sbjct: 64 KHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYL 121
Query: 1803 HEKN---IIHLDVKPENI------MCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF 1853
H++ IIH D+K NI ++ +K+ DFGLA + + G +
Sbjct: 122 HDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA-REWHRTTKMSAAGAYAW 180
Query: 1854 AAPEIVEREPVGFYTDMWAVGVL 1876
APE++ +D+W+ GVL
Sbjct: 181 MAPEVIRASMFSKGSDVWSYGVL 203
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 109 bits (272), Expect = 2e-25
Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 28/203 (13%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTC-------RVIAIATPTLTWFHNNQELKQSVKFMKR 2143
++ + F EG+ V C LTW N+ + R
Sbjct: 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETR 75
Query: 2144 YAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYD--------------- 2188
D + ED G Y+ N + + L V D
Sbjct: 76 MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135
Query: 2189 ----LPVIHYKNHRRAN-KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGV 2243
L R + W ++ + N+ + SV L + ++ ED+G
Sbjct: 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK-FLSVRGTTHLLVHDVALEDAGY 194
Query: 2244 YTCEAFNDEGESFSSCTLLVQVS 2266
Y C + T +++
Sbjct: 195 YRCVLTFAHEGQQYNITRSIELR 217
Score = 95.1 bits (236), Expect = 1e-20
Identities = 40/326 (12%), Positives = 79/326 (24%), Gaps = 82/326 (25%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTC-------RVIAIATPTLTWFHNNQELKQSVKFMKR 2060
++ + F EG+ V C LTW N+ + R
Sbjct: 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETR 75
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQD---------------------TSFDRRQAAPRFVIK 2099
D L + +D F+ A F+
Sbjct: 76 MWAQDGA-------LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISY 128
Query: 2100 PQSAFCYEGQSVKFTCRVIAIA-----TPTLTWFHNNQELKQSVKFMKRYAGDDYTFVIN 2154
PQ S C ++ + W+ ++ L + + G +++
Sbjct: 129 PQILT--LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG-TTHLLVH 185
Query: 2155 RTKMEDRGEYIIRAENHYGYREEVVFLNVQ------RKYDLPVIHYKNH----------- 2197
+ED G Y + ++ + +++ ++ +PVI
Sbjct: 186 DVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLT 245
Query: 2198 ------------------RRANKYDVIWLHNNKEIKPSNDFAYSS---VAHVHTLKIAEI 2236
AN + + + YS L +
Sbjct: 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305
Query: 2237 FPEDSGV-YTCEAFNDEGESFSSCTL 2261
ED + + C N T+
Sbjct: 306 TREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 72.4 bits (177), Expect = 3e-13
Identities = 25/145 (17%), Positives = 38/145 (26%), Gaps = 42/145 (28%)
Query: 2202 KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+ ++ W N+ + A L + EDSG Y C N S L
Sbjct: 54 RINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Query: 2262 LVQ----------------------------------------VSWYKDGNPVSDDPATY 2281
V + WYKD + D
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN--E 171
Query: 2282 QFTQIGQTYKMKILSTTLDDVGQYS 2306
+F + T + + L+D G Y
Sbjct: 172 KFLSVRGTTHLLVHDVALEDAGYYR 196
Score = 58.2 bits (140), Expect = 1e-08
Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 26/157 (16%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFM-----AFP 1454
N + K S + V E + + P +
Sbjct: 99 TTRNASYCD---KMSIELRVFENT--DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT 153
Query: 1455 QPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD----T 1510
W+ + ++D + + + L+V + D G YR L T
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFL--SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211
Query: 1511 ATLHVRVLDRP--------HPPENLHADEFAGDSLTL 1539
++ +R+ + P + + A G LT+
Sbjct: 212 RSIELRIKKKKEETIPVIISPLKTISASL--GSRLTI 246
Score = 55.8 bits (134), Expect = 6e-08
Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 37/227 (16%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
GE + L C P + +T W K+ + + +
Sbjct: 33 GEPVALRCPQVPYWLWASVSP----RINLT-WHKNDSARTVPGEE-------ETRMWAQD 80
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT--CKPRF 271
++PA D G + N K S +
Sbjct: 81 ------GALWLLPALQE-----D--SGT---YVCTTRNASYC---DKMSIELRVFENTDA 121
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFI--GEPPPEVTWTIDGKELKTDSVRTTVTSIGYH 329
P I P + +G ++ ++ + ++ W D L D+ + H
Sbjct: 122 FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH 181
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTI 376
+V+ + D+G Y L + + T ++ I K TI
Sbjct: 182 LLVH--DVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI 226
Score = 55.1 bits (132), Expect = 1e-07
Identities = 25/218 (11%), Positives = 55/218 (25%), Gaps = 42/218 (19%)
Query: 2004 FDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIA-----TPTLTWFHNNQELKQSVKFM 2058
F+ A F+ PQ S C ++ + W+ ++ L + +
Sbjct: 116 FENTDAFLPFISYPQILT--LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173
Query: 2059 KRYAGDD--------------YT---FYSSLRKLQIDRFSIQDT-SFDRRQAAPRFVIKP 2100
G Y ++ + SI+ + + P +
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL 233
Query: 2101 QSAFCYEGQSVKFTCRVIAIA---TPTLTWFHNNQELKQSVKFMKRYAGDDYTFV----- 2152
++ G + C+V T+ W+ N +S R
Sbjct: 234 KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNE 293
Query: 2153 --------INRTKMEDRG-EYIIRAENHYGYREEVVFL 2181
+ ED ++ N ++ +
Sbjct: 294 NYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 54.7 bits (131), Expect = 2e-07
Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 14/131 (10%)
Query: 262 SAPVTCKPR------FVAPKIKTPLKDIIIKAG-------KILNVEIQFIGEPPPEVTWT 308
+ P T +P K G + + P +TW
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 309 IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETI 368
+ T + + + DSGTY RN S D+ S + V E
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALW-LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENT 119
Query: 369 SKTNTTTISSK 379
+
Sbjct: 120 DAFLPFISYPQ 130
Score = 48.1 bits (114), Expect = 2e-05
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI--GEPPPEV 720
N + + + P I P + +G ++ ++ + ++
Sbjct: 99 TTRNASY-CDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157
Query: 721 TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
W D L D+ + H +V+ + D+G Y L + + T
Sbjct: 158 QWYKDSLLLDKDNEKFLSVRGTTHLLVH--DVALEDAGYYRCVLTFAHEGQQYNITRS 213
Score = 46.2 bits (109), Expect = 9e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 1435 DITVKAGEDFSIHVPFMAF-------PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVV 1487
GE ++ P + + P+ W NDS ++ +L +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP-GEEETRMWAQDGALWL 85
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP 1523
+ + D G Y +N + D ++ +RV +
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA 121
Score = 46.2 bits (109), Expect = 9e-05
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 1417 VIVEEQPNKPVMDLSGVRDITVKAGEDFSIH---VPFMAFPQPAAFWF-ANDSIIDDSDT 1472
+ +++ PV+ +S ++ I+ G +I P W+ AND+ I+ +
Sbjct: 218 IKKKKEETIPVI-ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYP 276
Query: 1473 RVH-----------KQLTMNSASLVVKNSQRSD-GGQYRLQLKNPAGFDTATLHVRVLDR 1520
L+ R D ++ + N F T V+
Sbjct: 277 GGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEHHH 336
Query: 1521 PH 1522
H
Sbjct: 337 HH 338
Score = 45.1 bits (106), Expect = 2e-04
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 8/97 (8%)
Query: 688 APKIKTPLKDIIIKAG-------KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS 740
K G + + P +TW + T
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 741 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + + DSGTY RN S D+ S +
Sbjct: 78 AQDGALW-LLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Score = 43.1 bits (101), Expect = 7e-04
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 16/114 (14%)
Query: 265 VTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFI-GEPPPEVTWTIDGKELKTD---- 317
+ K P I +PLK I G + ++ G P + W
Sbjct: 218 IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Query: 318 -----SVRTTVTSIGYHTIVNTV---NTKRSDSGT-YHLELRNTSGRDEGSFTV 362
R + + I + R D + + NT TV
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 40.8 bits (95), Expect = 0.004
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 20/139 (14%)
Query: 663 IAVNEAGPSEPS---DASDIIMCKQRFLAPKIKTPLKDIIIKAGK--ILNVEIQFI-GEP 716
+ + + I K+ P I +PLK I G + ++ G P
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257
Query: 717 PPEVTWTIDGKELKTD---------SVRTTVTSIGYHTIVNTV---NTKRSDSGT-YHLE 763
+ W R + + I + R D +
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
Query: 764 LRNTSGRDEGSFTI-VPDH 781
+ NT T+ H
Sbjct: 318 VHNTLSFQTLRTTVKEHHH 336
Score = 33.9 bits (77), Expect = 0.67
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 2252 EGESFS-SCTLL-----------VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTL 2299
EGE + C + + ++W+K+ + P + Q + +L
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSAR-TVPGEEETRMWAQDGALWLLPALQ 90
Query: 2300 DDVGQYS 2306
+D G Y
Sbjct: 91 EDSGTYV 97
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 103 bits (259), Expect = 4e-25
Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 25/193 (12%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQEL---KQSVKFMKRYAGDDY 2149
+ I P G+S F C+V A ++WF N E Q + D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREE-VVFLNVQRKYDLPVI--HYKNHR-------- 2198
T I ++D G Y G + E V + + +K +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK---LMFKNAPTPQEFKEGEDAV 119
Query: 2199 ---RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
+IW H +++ D + +++ + L+I I D G Y CE
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILA 178
Query: 2253 GESFSSCTLLVQV 2265
+ + V V
Sbjct: 179 RGEINFKDIQVIV 191
Score = 86.4 bits (214), Expect = 4e-19
Identities = 36/194 (18%), Positives = 56/194 (28%), Gaps = 26/194 (13%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+ I P G+S F C+V A ++WF N E + +R +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ--QRISVVWNDDD 60
Query: 2070 SSLRKLQIDRFSIQDT------------SFDRRQA------APRFVIKPQSAFCYEGQSV 2111
SS L I +I D + F P EG+
Sbjct: 61 SS--TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 2112 KFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA-GDDYTFVINRTKMEDRGEYIIRAEN 2170
C V++ PT+ W H +++ R+ + I K D G Y
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKD--VRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Query: 2171 HYGYREEVVFLNVQ 2184
+ V
Sbjct: 177 LARGEINFKDIQVI 190
Score = 60.6 bits (147), Expect = 3e-10
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ + G S+A+ V F K K G+ + + PP + W
Sbjct: 80 VVTAE--DGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIW 134
Query: 308 TIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
G+++ VR V S Y I K++D GTY E R + + + V+
Sbjct: 135 KHKGRDVILKKDVRFIVLSNNYLQI---RGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 57.9 bits (140), Expect = 3e-09
Identities = 25/159 (15%), Positives = 40/159 (25%), Gaps = 43/159 (27%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAH---VHTLKIAEIFPEDSGVYTCEAFNDEGESFS-SC 2259
D+ W N E N S V + TL I +D+G+Y C ++G +
Sbjct: 34 DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV 93
Query: 2260 TLLVQ---------------------------------VSWYKDGNPVSDDPATYQFTQI 2286
+ + + W G V
Sbjct: 94 NVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 2287 GQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNVV 2321
++I D G Y G I + V+
Sbjct: 154 NNY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 53.3 bits (128), Expect = 1e-07
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
+ E G + + I F K K G+ + + PP + W
Sbjct: 80 VVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIW 134
Query: 723 TIDGKELK-TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
G+++ VR V S Y I K++D GTY E R + + I
Sbjct: 135 KHKGRDVILKKDVRFIVLSNNYLQI---RGIKKTDEGTYRCEGRILARGEINFKDI 187
Score = 52.5 bits (126), Expect = 2e-07
Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 16/123 (13%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+ E G + + V + ++ N P K GED I ++ P
Sbjct: 80 VVTAEDGTQS--EATVNVKIFQKLMFKNAPT-------PQEFKEGEDAVIVCDVVSSLPP 130
Query: 1457 AAFWFANDS-IIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
W +I D R +++ L ++ +++D G YR + + A + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFI---VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 1516 RVL 1518
+V+
Sbjct: 188 QVI 190
Score = 48.3 bits (115), Expect = 5e-06
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS 2054
F P EG+ C V++ PT+ W H +++
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK 144
Score = 47.1 bits (112), Expect = 1e-05
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAA-FWFANDS-IIDDSDTRV-HKQLTMNSASLVVKNS 1490
+ GE + WF+ + + + R+ +S++L + N+
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 1491 QRSDGGQYRLQLKNPAGFD-TATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
D G Y+ + G AT++V++ + P E G+ +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE--GEDAVI 120
Score = 45.6 bits (108), Expect = 4e-05
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWT-IDGKELKTDSVRTTVTSIGYH-- 329
++ I G+ Q G+ +++W +G++L + R +V
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 330 --TIVNTVNTKRSDSGTYHLELRNTSG-RDEGSFTVTVLETIS 369
TI N D+G Y + G + E + V + + +
Sbjct: 63 TLTI---YNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Score = 41.7 bits (98), Expect = 9e-04
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWT-IDGKELKTDSVRTTVTSIGYH-- 744
++ I G+ Q G+ +++W +G++L + R +V
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 745 --TIVNTVNTKRSDSGTY 760
TI N D+G Y
Sbjct: 63 TLTI---YNANIDDAGIY 77
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 116
Score = 100 bits (252), Expect = 4e-25
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYP 1278
Q P SP+S+++ W P + G I Y + E+G + + +
Sbjct: 11 TQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTD--KEQDVD 67
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
++ ++T++ L++ +Y FRV+A N+ GPG + +
Sbjct: 68 VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAV 105
Score = 93.6 bits (233), Expect = 2e-22
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G S V+ + + + P P + + S+T++W P G I+ Y +
Sbjct: 1 GSSGSSGR---VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+KG D V V + +T+ L + EY+FRV+A N+ G + V V
Sbjct: 57 EKGTDKE--QDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVS---TPDVAV 105
Score = 88.5 bits (220), Expect = 1e-20
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKK 627
G S + +T E P + + W+ P++ G I +Y +
Sbjct: 1 GSSGSSGRVETQP---EVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 628 EKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
EKG + V + I L K EY FRV+A N+ GP + +
Sbjct: 57 EKGTDKEQD---VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAV 105
Score = 82.4 bits (204), Expect = 1e-18
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 1017 GYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 1076
G S SS + +P P P L +P S +++W+ P+ G I N
Sbjct: 1 GSSGSSGRVE--------TQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQN 50
Query: 1077 YVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITA 1136
Y + E T + V S +Y + GL+ +Y FRV A N++G +
Sbjct: 51 YKLYYMEKGTDKEQDVD--VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP---DVAV 105
Query: 1137 KFPFTVPDPP 1146
+ T+ D
Sbjct: 106 R---TLSDSG 112
Score = 80.8 bits (200), Expect = 5e-18
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G S + + P + + W P G I Y +
Sbjct: 1 GSSGSS---GRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
K E+ V + + ++ LK+ EY FRV+A NK GPG + A T
Sbjct: 57 EKGTDKEQD--VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
Score = 78.5 bits (194), Expect = 3e-17
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P P NL A + S+T+ W P G EI NY + + + V V++
Sbjct: 16 QLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD--VSSHS 72
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+ L + Y FRV+A N++G + + D + G
Sbjct: 73 YTINGLKKYTEYSFRVVAYNKHGPGVST---PDVAVRTLSDSGPSSG 116
Score = 70.8 bits (174), Expect = 2e-14
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P P L+ + +S + W P G +I +Y + M+ T + + DVS
Sbjct: 17 LPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV-DVSSHSY 73
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLP 158
L + +Y+FRV A NK G +
Sbjct: 74 TINGLKKYTEYSFRVVAYNKHGPGVS 99
Score = 68.1 bits (167), Expect = 2e-13
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 475 GASEPLDPLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI 530
G+S + P P L + S ++W PV G I +Y + M+
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEK 58
Query: 531 SRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
D S Y + L EY FRV A N G
Sbjct: 59 GTDKEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGV 98
Score = 57.0 bits (138), Expect = 1e-09
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
++ + +PG + ++ SI++ W P G IQ Y + DK
Sbjct: 7 GRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQD 65
Query: 1670 ASMAHIPDTSLKYT 1683
+ +S YT
Sbjct: 66 -----VDVSSHSYT 74
Score = 57.0 bits (138), Expect = 1e-09
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P + + S+T++W P G I+ Y + +KG D V V + +T
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKE--QDVDVSSHSYT 74
Query: 874 L 874
+
Sbjct: 75 I 75
Score = 45.8 bits (109), Expect = 1e-05
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF---P 485
Y + E G D + V +T+ GL + +Y FR+ N +G +
Sbjct: 51 YKLYYMEKGTDKEQDVDVSSHS--YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL 108
Query: 486 DKPSPPEG 493
P G
Sbjct: 109 SDSGPSSG 116
Score = 43.9 bits (104), Expect = 5e-05
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 1133 SITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
+ + +P P + + T+ W+ P + G +IQ YK+ +
Sbjct: 8 RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
+ Y L E + + V +Y ++ L + +Y FRV A N G + R
Sbjct: 48 IQNYKLYYMEKGTDKEQD-VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVR 106
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus}
SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Length = 382
Score = 108 bits (271), Expect = 6e-25
Identities = 54/294 (18%), Positives = 88/294 (29%), Gaps = 53/294 (18%)
Query: 2011 PRFVIKPQSAF-CYEGQSVKFTCRVIA-IATPTLTWFHNNQEL---KQSVKFMKRYAGD- 2064
F + + EG V FTC + W N +F+ + G+
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 160
Query: 2065 -----------DYT------FYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIK-PQSAFCY 2106
+Y+ + + + + D RQ AP K P +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
GQ V C P + W + ++ + I ED G Y
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGSQT------SKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHYK--NHRRANKYDVI--------------WLHN 2210
AEN G + + + P + D+ WL +
Sbjct: 275 EAENIKGRDTYQGRIIIHAQ---PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 2211 NKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ + N S L+ +++ EDSG+Y C A N G ++S L VQ
Sbjct: 332 GQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 108 bits (271), Expect = 8e-25
Identities = 68/391 (17%), Positives = 107/391 (27%), Gaps = 88/391 (22%)
Query: 2007 RQAAPRFVIKPQSAFCYEG---QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAG 2063
R P F +P EG + V TCR A T W N ELK R
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA 60
Query: 2064 DDYTFYSSLRKLQIDRFS----------IQDTSFDRRQAAPRFVIKPQSAF-CYEGQSVK 2112
D + ++ + + + R F + + EG V
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120
Query: 2113 FTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENH 2171
FTC + W N + + I +T+ D G Y A +H
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 2172 YGYREEVVFLNVQR--------KYDLPVIHYKNHR--------------RANKY---DVI 2206
+ + VF + + P I K A +
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 2207 WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ-- 2264
W + ++ L I + ED G Y CEA N +G +++
Sbjct: 241 WRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ 294
Query: 2265 -------------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
V W +DG P++ G+ ++
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN--RIEVSGGE---LR 349
Query: 2294 ILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
L+D G Y + G + A+ L V
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 95.3 bits (237), Expect = 1e-20
Identities = 35/196 (17%), Positives = 52/196 (26%), Gaps = 34/196 (17%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
R+ A P + GQ V C P + W +
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL--------- 253
Query: 2066 YTFYSSLRKLQIDRFSIQDT---------SFDRR--------QAAPRFVIKPQSAFCYEG 2108
SS L I +D R A P ++ G
Sbjct: 254 ----SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIG 309
Query: 2109 QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
++++C P + W + Q L R ++ +ED G Y A
Sbjct: 310 SDLRWSCVASGKPRPAVRWLRDGQPLASQ----NRIEVSGGELRFSKLVLEDSGMYQCVA 365
Query: 2169 ENHYGYREEVVFLNVQ 2184
EN +G L VQ
Sbjct: 366 ENKHGTVYASAELTVQ 381
Score = 84.9 bits (210), Expect = 4e-17
Identities = 52/304 (17%), Positives = 68/304 (22%), Gaps = 84/304 (27%)
Query: 2090 RQAAPRFVIKPQSAFCYEG---QSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAG 2146
R P F +P EG + V TCR A T W N ELK RY
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD--SRYRL 58
Query: 2147 DDYTFVI-NRTKMEDRGEYIIRAENHYG-YREEVVFLNVQRKYDLPVIHYKNHRRAN--- 2201
VI N K +D G Y A N G L L +
Sbjct: 59 VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF---LQEFSAEERDPVKITE 115
Query: 2202 ---------------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTC 2246
WL N D L IA+ D G Y+C
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175
Query: 2247 EAFNDEGESFSSCTLLV------------------------------------------- 2263
A + S
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP 235
Query: 2264 --QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFS 2317
Q+ W K + ++ + I + +D G Y G
Sbjct: 236 VPQIKWRKLDGSQTS-----KWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 2318 LNVV 2321
+ +
Sbjct: 289 IIIH 292
Score = 61.4 bits (149), Expect = 1e-09
Identities = 43/267 (16%), Positives = 75/267 (28%), Gaps = 47/267 (17%)
Query: 1293 GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHD 1352
G Y + +A N G S+ + Q+ + + K+ V + PP H
Sbjct: 75 GSY--QCVATNARGTVV-SREASLRFGFLQEFSAEERDPVKITE--GWGVMFTCSPPPHY 129
Query: 1353 GGARIKGYIVQKRKKGGDWVDANSVPVPNP-------VHTVGNL-----SEGEEYTFRVI 1400
+ W+ N P P T GNL + +
Sbjct: 130 PALSYR------------WLL-NEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176
Query: 1401 AVNEAGNSEPGKQS--GPVIVEEQPNK---PVMDLSGVRDITVKAGEDFSIHVPFMAFPQ 1455
A + S + + + + P + D G+ ++ P
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 1456 PAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
P W D + + L ++N D G Y + +N G DT +
Sbjct: 237 PQIKWRKLDG-------SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Query: 1516 RVLDRPH---PPENLHADEFAGDSLTL 1539
+ +P + AD G L
Sbjct: 290 IIHAQPDWLDVITDTEADI--GSDLRW 314
Score = 54.1 bits (130), Expect = 3e-07
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 13/128 (10%)
Query: 245 FRVIAVNKGGPGEPSKASAP------VTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFI 298
+ A + S S ++ D G+++ +E
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
G P P++ W + + +++ N D GTY E N GRD
Sbjct: 233 GNPVPQIKWRKLDGSQTSKWLS-------SEPLLHIQNVDFEDEGTYECEAENIKGRDTY 285
Query: 359 SFTVTVLE 366
+ +
Sbjct: 286 QGRIIIHA 293
Score = 53.3 bits (128), Expect = 6e-07
Identities = 24/122 (19%), Positives = 31/122 (25%), Gaps = 19/122 (15%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A N G + P + D G L G+P P V W
Sbjct: 275 EAENIKGR---DTYQGRIIIH---AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTVT 363
DG+ L + + DSG Y N G S +T
Sbjct: 329 LRDGQPLASQ---------NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Query: 364 VL 365
V
Sbjct: 380 VQ 381
Score = 52.9 bits (127), Expect = 7e-07
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 18/122 (14%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
A N G G +I+ QP + D G D P+P
Sbjct: 275 EAENIKGRDT---YQGRIIIHAQPDWLDVI-------TDTEADIGSDLRWSCVASGKPRP 324
Query: 1457 AAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVR 1516
A W + + + R+ ++ L D G Y+ +N G A+ +
Sbjct: 325 AVRWLRDGQPLASQN-RIE----VSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Query: 1517 VL 1518
V
Sbjct: 380 VQ 381
Score = 51.8 bits (124), Expect = 2e-06
Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 270 RFVAPKIKTPLKDIIIKAGK-----ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVT 324
R P + + G L + PP W ++G ELK
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRL 58
Query: 325 SIGYHTIVNTVNTKRSDSGTYHLELRNTSGR---DEGSFTVTVLETISKTNTTTIS 377
G I N K D+G+Y N G E S L+ S +
Sbjct: 59 VAGDLVISN--PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVK 112
Score = 48.7 bits (116), Expect = 1e-05
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 9/90 (10%)
Query: 685 RFLAPKIKTPLKDIIIKAGK-----ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVT 739
R P + + G L + PP W ++G ELK
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRL 58
Query: 740 SIGYHTIVNTVNTKRSDSGTYHLELRNTSG 769
G I N K D+G+Y N G
Sbjct: 59 VAGDLVISN--PVKAKDAGSYQCVATNARG 86
Score = 47.9 bits (114), Expect = 2e-05
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 13/136 (9%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR------FLAPKIKTPLKDIIIKA 702
I + A + S S + D
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
Query: 703 GKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHL 762
G+++ +E G P P++ W + + +++ N D GTY
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS-------SEPLLHIQNVDFEDEGTYEC 274
Query: 763 ELRNTSGRDEGSFTIV 778
E N GRD I+
Sbjct: 275 EAENIKGRDTYQGRII 290
Score = 47.5 bits (113), Expect = 3e-05
Identities = 19/91 (20%), Positives = 24/91 (26%), Gaps = 13/91 (14%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P + D G L G+P P V W DG+ L + +
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---------NRIEVS 344
Query: 748 NTV----NTKRSDSGTYHLELRNTSGRDEGS 774
DSG Y N G S
Sbjct: 345 GGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Score = 46.4 bits (110), Expect = 8e-05
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 19/148 (12%)
Query: 1412 KQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD 1471
+ GPV E+ + A E ++ A P W N + +
Sbjct: 1 RSYGPVFEEQ--------PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP 52
Query: 1472 TRVHKQLTMNSASLVVKNS-QRSDGGQYRLQLKNPAGF---DTATLHVRVLDR--PHPPE 1525
+ + + LV+ N + D G Y+ N G A+L L +
Sbjct: 53 ---DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERD 109
Query: 1526 NLHADEFAGDSLTLYWTPPRDNGGSEIT 1553
+ E G + +PP
Sbjct: 110 PVKITE--GWGVMFTCSPPPHYPALSYR 135
Score = 39.1 bits (91), Expect = 0.016
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 10/137 (7%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVT 721
+A N G + S + FL + I G + P
Sbjct: 80 VATNARG----TVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYR 135
Query: 722 WTIDGKE--LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVP 779
W ++ + D R + G I T+ SD G Y + S
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYI---AKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 780 DHLKNLWNTKKSLHPVL 796
L + P +
Sbjct: 193 SQLSLAAEDARQYAPSI 209
Score = 37.5 bits (87), Expect = 0.048
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 10/130 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVT 306
+A N G + S + + F+ + I G + P
Sbjct: 80 VATNARG----TVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYR 135
Query: 307 WTIDGKE--LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
W ++ + D R + G I T+ SD G Y + S
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYI---AKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 365 LETISKTNTT 374
+
Sbjct: 193 SQLSLAAEDA 202
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex,
GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
PDB: 1p9m_A
Length = 303
Score = 106 bits (265), Expect = 7e-25
Identities = 45/288 (15%), Positives = 75/288 (26%), Gaps = 31/288 (10%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCH 1198
+ + W TN+ T+ ++ + + S C
Sbjct: 30 EKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC---NILTF 86
Query: 1199 ADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPIT 1258
+ Q +G + PP+ P + W+ T
Sbjct: 87 GQLEQNVYGITIISG----------LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE--T 134
Query: 1259 GYYVEKRERGGEWLRANNYPTTNLNFTV-HDLREGGKYEFRVIAINEAGPGKPS----KP 1313
+ ++ ++ T + TV + E V A N G P
Sbjct: 135 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP 194
Query: 1314 TDIVQCKEQKRKPDPPEAPKVDRI--TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 1371
V KP+PP V + L+W P +K I + K W
Sbjct: 195 VYKV-------KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW 247
Query: 1372 --VDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPV 1417
+ TV +L EY FR+ + E G S
Sbjct: 248 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEA 295
Score = 101 bits (251), Expect = 6e-23
Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 16/259 (6%)
Query: 1434 RDITVKAGEDFSIH-------VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLV 1486
V+ +F+ + + W N I + + +
Sbjct: 12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTD 71
Query: 1487 VKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRD 1546
+ + + + + + P P+NL G + W R+
Sbjct: 72 IASLN--IQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRE 129
Query: 1547 NGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVR-NLAIGSTYEFRVMAENQYGLSKP 1605
TN+ ++ + + T V + E V AEN G
Sbjct: 130 THLE--TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS 187
Query: 1606 A-LTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISD 1664
+ DP+ P + P + + L W+ P I +Y ++ R
Sbjct: 188 DHINFDPVYKVKP-NPPHNLSV-INSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDA 244
Query: 1665 DKWIKASMAHIPDTSLKYT 1683
W + T +T
Sbjct: 245 STWSQIPPEDTASTRSSFT 263
Score = 83.7 bits (206), Expect = 3e-17
Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)
Query: 490 PPEGPLEVS--NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW---SDAGMTVSL 544
PPE P +S + + W + ++ ++ + + S
Sbjct: 103 PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSC 160
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK--DWGED 602
D + V+A N++G+ + +P+ P +V +
Sbjct: 161 TVDYSTVYF-VNIEVWVEAENALGKV---TSDHINFDPVYKVKPNPPHNLSVINSEELSS 216
Query: 603 FVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWM--NALEVPANKTDVKIPDLTKGQEYEF 660
+ L W P I Y IQ + K W + + ++ + DL EY F
Sbjct: 217 ILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 275
Query: 661 RVIAVNEAGPSEPSDASD 678
R+ + E G SD S+
Sbjct: 276 RIRCMKEDGKGYWSDWSE 293
Score = 77.9 bits (191), Expect = 3e-15
Identities = 49/283 (17%), Positives = 81/283 (28%), Gaps = 33/283 (11%)
Query: 1058 SCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVR 1117
C L K + + + + + S N Q +
Sbjct: 25 VCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNIL 84
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNA---TLMWDRPRTDGGSKI 1174
Q PP +P+ + N WD R + +
Sbjct: 85 TFGQLE---------QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGR-ETHLET 134
Query: 1175 QGYKVEFRSTRTATDCGL---GYQQCHADVGQTPH---GWWLQDSRIQGRIQSP---FDP 1225
+T DC C D W++ G++ S FDP
Sbjct: 135 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP 194
Query: 1226 -----PDAPSQPEVTGYS--PSSVSLAWNPPANHGGRPITGYYVEKRERG-GEW--LRAN 1275
P+ P V S + L W P+ I Y ++ R + W +
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPE 253
Query: 1276 NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQ 1318
+ +T +FTV DL+ +Y FR+ + E G G S ++
Sbjct: 254 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS 296
Score = 76.0 bits (186), Expect = 1e-14
Identities = 43/208 (20%), Positives = 68/208 (32%), Gaps = 15/208 (7%)
Query: 71 LHIPSPPEGP--LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 128
+ PPE P L EW R+ E + D
Sbjct: 98 IISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTP 157
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR--PDRPGQPTVT--D 184
+ T + + + V+A N +G+ S DP + P+ P +V +
Sbjct: 158 TSCTVDYSTVYFVNIEVWVEAENALGKV-----TSDHINFDPVYKVKPNPPHNLSVINSE 212
Query: 185 WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS--VPDLKEGE 241
+ L WT P + +Y I+ + K W + T +S V DLK
Sbjct: 213 ELSSILKLTWTNPSIKSVIIL-KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 242 EYEFRVIAVNKGGPGEPSKASAPVTCKP 269
EY FR+ + + G G S S +
Sbjct: 272 EYVFRIRCMKEDGKGYWSDWSEEASGIT 299
Score = 54.8 bits (131), Expect = 1e-07
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 1499 RLQLKNPAG---FDTATLHVRVLDRPHPPENLHAD--EFAGDSLTLYWTPPRDNGGSEIT 1553
++ +N G D +P+PP NL E L L WT P +
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK 234
Query: 1554 NYVVEKKDYNSTVWTKVSSY---VTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 1604
Y ++ + +++ W+++ T V++L + Y FR+ + G
Sbjct: 235 -YNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 287
Score = 54.8 bits (131), Expect = 1e-07
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 1041 KPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF---V 1096
KP+PP + S+ L+W P I Y ++ WS++
Sbjct: 199 KPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 257
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYG 1123
++ V L+ +Y FR+R + G
Sbjct: 258 TRSSFTVQDLKPFTEYVFRIRCMKEDG 284
Score = 49.4 bits (117), Expect = 7e-06
Identities = 21/204 (10%), Positives = 44/204 (21%), Gaps = 15/204 (7%)
Query: 1229 PSQPEVTGYSPSSVSLAWNPPANHGGR---PITGYYVEKRERGGEWLRANNYPTTNLNFT 1285
P P V +S + + E N T + T
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN--RTASSVT 68
Query: 1286 VHDLREG-GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
D+ + ++ + P+ P+ +
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYGITIISG------LPPEKPKNLSCIVNEGKKMRC 122
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVP-VPNPVHTVGNLSEGEEYTFRVIAVN 1403
W + + ++ + D + P + V A N
Sbjct: 123 EWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 180
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPV 1427
G + + + +PN P
Sbjct: 181 ALGKVTSDHINFDPVYKVKPNPPH 204
Score = 43.3 bits (101), Expect = 7e-04
Identities = 28/334 (8%), Positives = 65/334 (19%), Gaps = 93/334 (27%)
Query: 686 FLAPKIKTPLKDIIIKAG-------KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV 738
L P + +++ + + + + W + + +
Sbjct: 2 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 61
Query: 739 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHC 798
+ T + + + ++ TI+
Sbjct: 62 RTASSVTFTDIASLNIQLTCNILTF--GQLEQNVYGITIISGL----------------- 102
Query: 799 RGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD 858
P+ P+ + W + + ++
Sbjct: 103 --------------PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHK 146
Query: 859 WVDANSVPVPN-----PVHTLLSIGYL--------------------------------S 881
+ D + T+ +
Sbjct: 147 FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNL 206
Query: 882 QFLAEEKKHGKLLL--------AKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+ E+ L L + + Y I+ R + TV
Sbjct: 207 SVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQD 266
Query: 934 LLEGTTYEFRVRAENLQGL------SEPITTKEP 961
L T Y FR+R G SE +
Sbjct: 267 LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
Score = 37.9 bits (87), Expect = 0.029
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 1885 DTNWRVAN--DYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ W D ++ V L +Y FR++ G S S+E
Sbjct: 244 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE 294
Score = 32.1 bits (72), Expect = 2.0
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 428 RYIIEMAEYGLDNWKTVPGF---CPKEFFTVKGLTEGKKYVFRIRTENMYGA---SEPLD 481
+Y I+ W +P + FTV+ L +YVFRIR G S+ +
Sbjct: 234 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 293
Query: 482 PL 483
Sbjct: 294 EA 295
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 107 bits (270), Expect = 9e-25
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLH------ 1743
Y ++ ++G G F V ++ A K + + E EI ++ +++
Sbjct: 21 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIV-RGDKVYTEAAEDEIKLLQRVNDADNTK 79
Query: 1744 -----HPKLINLHDAFE----DDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMR 1793
++ L D F + +V++FE L G L I +++ + V +
Sbjct: 80 EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISK 138
Query: 1794 QVCEAVKHMHEK-NIIHLDVKPENIM----CQTRNSTNVKMIDFGLATKLDPNEVVKIST 1848
Q+ + +MH + IIH D+KPEN++ N +K+ D G A D + I
Sbjct: 139 QLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQ- 197
Query: 1849 GTAEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
T E+ +PE++ P G D+W+ L +
Sbjct: 198 -TREYRSPEVLLGAPWGCGADIWSTACLIF 226
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding,
cell junction, cell membrane, integrin-binding protein,
membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB:
3kmw_A* 3rep_A*
Length = 271
Score = 105 bits (263), Expect = 1e-24
Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 18/200 (9%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHH 1744
+ + L ++ G + + R + GN K + V ++ +E + H
Sbjct: 9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Query: 1745 PKLINLHDAFED--DDEMVLIFEFLSGGELFERI-TAPDYKMSEAEVINYMRQVCEAVKH 1801
P ++ + A + LI ++ G L+ + ++ + +++ + + + +
Sbjct: 67 PNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAF 126
Query: 1802 MHEKN--IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIV 1859
+H I + ++M ++ + + + APE +
Sbjct: 127 LHTLEPLIPRHALNSRSVMIDEDM--TARISMADVKF----SFQSPGRMYAPAWVAPEAL 180
Query: 1860 EREPVGFYT---DMWAVGVL 1876
+++P DMW+ VL
Sbjct: 181 QKKPEDTNRRSADMWSFAVL 200
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 106 bits (266), Expect = 1e-24
Identities = 46/195 (23%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI--RKEIDIMNQLHHPKLIN 1749
+ IG+G+FG V++ + A K + V ++ R E+ ++ + H ++
Sbjct: 40 LSTRIGSGSFGTVYKGKWHGD---VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILL 96
Query: 1750 LHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIH 1809
D + ++ ++ G L++ + + K ++I+ RQ + + ++H KNIIH
Sbjct: 97 FMGYM-TKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIH 155
Query: 1810 LDVKPENIMCQTRNSTNVKMIDFGLAT---KLDPNEVVKISTGTAEFAAPEIVEREPVGF 1866
D+K NI VK+ DFGLAT + ++ V+ TG+ + APE++ +
Sbjct: 156 RDMKSNNIFLHEGL--TVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNP 213
Query: 1867 YT---DMWAVGVLAY 1878
++ D+++ G++ Y
Sbjct: 214 FSFQSDVYSYGIVLY 228
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte
antigen related, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 107
Score = 99.8 bits (249), Expect = 1e-24
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
P P + +S + L W PP + G + Y ++ + + +
Sbjct: 6 SGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ V GL Y FR+ A+N+ G+ E E + P + P
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFE----KEIRTPEDLSGPS 105
Score = 98.6 bits (246), Expect = 2e-24
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 10/110 (9%)
Query: 1225 PPDAPSQPE--VTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNL 1282
P +P ++ + ++ L W+PP G + GY ++ ++ +
Sbjct: 4 GSSGPGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+FTV L +G Y FR+ A N AG G+ + D
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT-------PEDLSGPS 105
Score = 91.3 bits (227), Expect = 9e-22
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 588 PDAPEKPT--VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P +PT + + L W PP G + Y +Q N ++ +
Sbjct: 5 SSGPGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARP-NTIDFGKDDQ 62
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ L KG Y FR+ A N AG E +
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKE 94
Score = 89.8 bits (223), Expect = 3e-21
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 177 PGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 234
PG+PT ++ + L+W PPK+ G + Y ++ + +V
Sbjct: 8 PGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTV 66
Query: 235 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
L +G Y FR+ A N+ G GE +
Sbjct: 67 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101
Score = 89.4 bits (222), Expect = 4e-21
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 1326 PDPPEAP--KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 1383
P P + ++ L W PPK G + GY +Q + + +
Sbjct: 5 SSGPGRPTMMISTTAMNTALLQWHPPKELPGE-LLGYRLQYCRADEARPNTIDFGKDDQH 63
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
TV L +G Y FR+ A N AG E
Sbjct: 64 FTVTGLHKGTTYIFRLAAKNRAGLGEE 90
Score = 87.8 bits (218), Expect = 1e-20
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P P + A ++ L W PP++ G E+ Y ++ + +
Sbjct: 8 PGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFT 65
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAP 1624
V L G+TY FR+ A+N+ GL + + + P D+ G
Sbjct: 66 VTGLHKGTTYIFRLAAKNRAGLGEEF----EKEIRTPEDLSGPS 105
Score = 82.1 bits (203), Expect = 2e-18
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 132
P P + S ++ L+W P++ G ++L Y ++ + R + +
Sbjct: 8 PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHF 64
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 181
L +G Y FR+ A N+ G + P D G +
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEE----FEKEIRTPE---DLSGPSS 106
Score = 81.7 bits (202), Expect = 2e-18
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS- 543
P P + +S + L W P + G +L Y ++ +
Sbjct: 5 SSGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDD 61
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
+ V L Y+FR+ A N G + E T D
Sbjct: 62 QHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT----PEDLSGPS 105
Score = 62.0 bits (151), Expect = 1e-11
Identities = 24/147 (16%), Positives = 35/147 (23%), Gaps = 60/147 (40%)
Query: 814 PDPPEAP--KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 871
P P + ++ L W PPK G + GY +Q + + +
Sbjct: 5 SSGPGRPTMMISTTAMNTALLQWHPPKELPGE-LLGYRLQYCRADEARPNTIDFGKDDQH 63
Query: 872 HTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATV 931
T+ L G
Sbjct: 64 FTV--------------------------------TGLHKG------------------- 72
Query: 932 PRLLEGTTYEFRVRAENLQGLSEPITT 958
TTY FR+ A+N GL E
Sbjct: 73 ------TTYIFRLAAKNRAGLGEEFEK 93
Score = 59.0 bits (143), Expect = 2e-10
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP--- 485
Y ++ T+ + FTV GL +G Y+FR+ +N G E +
Sbjct: 40 YRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPE 99
Query: 486 DKPSPPEG 493
D P G
Sbjct: 100 DLSGPSSG 107
Score = 48.6 bits (116), Expect = 9e-07
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
PG P + ++ L W P+ G + Y ++ + +
Sbjct: 6 SGPGRP-TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTID---FGKD 60
Query: 1679 SLKYT 1683
+T
Sbjct: 61 DQHFT 65
Score = 47.8 bits (114), Expect = 1e-06
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 1875 VLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+L Y L D D+ D + V L +G Y FR+ AKN AG +
Sbjct: 37 LLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKE 94
Score = 42.8 bits (101), Expect = 1e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 1141 TVPDPPGQP--QIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ PG+P I N A L W P+ G ++ GY++++
Sbjct: 3 SGSSGPGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRA 47
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Length = 405
Score = 107 bits (268), Expect = 2e-24
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 1685 SVYDHYDIL-EEIGTGAFGVVHRCRER--KTGNIFAAKFIPVSHNLEKELIRKEIDIMNQ 1741
V D ++ ++G G +G V++ + + K +A K I + R EI ++ +
Sbjct: 17 RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIE-GTGISMSACR-EIALLRE 74
Query: 1742 LHHPKLINLHDAFED--DDEMVLIFEFLS-------GGELFERITAPDYKMSEAEVINYM 1792
L HP +I+L F D ++ L+F++ + ++ V + +
Sbjct: 75 LKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLL 134
Query: 1793 RQVCEAVKHMHEKNIIHLDVKPEN--IMCQTRNSTNVKMIDFGLA----------TKLDP 1840
Q+ + + ++H ++H D+KP N +M + VK+ D G A LDP
Sbjct: 135 YQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP 194
Query: 1841 NEVVKISTGTAEFAAPEIV--EREPVGFYT---DMWAVG 1874
VV T + APE++ R YT D+WA+G
Sbjct: 195 -VVV-----TFWYRAPELLLGARH----YTKAIDIWAIG 223
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 130
Score = 99.0 bits (247), Expect = 3e-24
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 1301 AINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGY 1360
+ G G PS P + + + P PP + SV L W+PP G I Y
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDV--PGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 1361 IVQKRKKGGD--WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVI 1418
+ R + +T L Y FR+ A G G+ + ++
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKG---WGEAAEALV 118
Query: 1419 VE-EQPNKP 1426
V E+ + P
Sbjct: 119 VTTEKRSGP 127
Score = 95.5 bits (238), Expect = 5e-23
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG--GEWLRANN 1276
++ D P P +SV L W PPA G I Y + R
Sbjct: 21 ERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEV 79
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ +T L+ Y FR+ A G G+ ++ + K P +
Sbjct: 80 LAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-----EKRSGPSS 129
Score = 93.2 bits (232), Expect = 4e-22
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDY 622
+ IG+ + + R D P P + V L W+PP G I Y
Sbjct: 5 SSGRIGDGS--PSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 623 IIQ-KKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
I + + + L Y FR+ A G E ++A +
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120
Score = 90.5 bits (225), Expect = 3e-21
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 149 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 208
+ +IG+ P PI + P P + V L W PP G I Y
Sbjct: 5 SSGRIGDGSPS--HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 209 IIE--KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
I ++ + + LK Y FR+ A + G GE ++A T
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Query: 267 CKP 269
K
Sbjct: 122 EKR 124
Score = 72.0 bits (177), Expect = 1e-14
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
D P PP G + ++ S L W+PP G I Y + + T + + V +P
Sbjct: 26 DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQI-THRLNTTTANTATVEVLAP 82
Query: 1100 A---YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ Y GL+ Y FR+ A+ + G E E T P
Sbjct: 83 SARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-----EKRSGP 127
Score = 65.1 bits (159), Expect = 2e-12
Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 471 ENMYGASEPLDPL-----FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII 525
G P P D P PP G + V S +L W+ P G IL Y I
Sbjct: 6 SGRIGDGSPSHPPILERTLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQI 63
Query: 526 E-KMDISRGTWSDAGMTVS--LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+++ + + + Y L YLFR+ A G + E T
Sbjct: 64 THRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-- 121
Query: 583 NEFDEPDAP 591
++ P
Sbjct: 122 ---EKRSGP 127
Score = 65.1 bits (159), Expect = 3e-12
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSG-- 129
+P PP G + + +S L W+ P G IL Y + +++ T + ++
Sbjct: 27 VPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSA 84
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
A L Y FR+ A + G T K
Sbjct: 85 RQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125
Score = 63.2 bits (154), Expect = 1e-11
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE-KKDYNSTVWTKVSSYVTTP 1577
D P PP + E S+ L W PP G I Y + + + + V +
Sbjct: 26 DVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSA 84
Query: 1578 F-VRVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
L S Y FR+ A+ + G + A +
Sbjct: 85 RQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Score = 60.5 bits (147), Expect = 1e-10
Identities = 27/153 (17%), Positives = 40/153 (26%), Gaps = 61/153 (39%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P PP + SV L W+PP
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAP--------------------------------- 54
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+G +L Y I R T V ++P T
Sbjct: 55 ----------------NGIIL------AYQITHRLNTTTANTAT-VEVLAPSARQYTATG 91
Query: 934 LLEGTTYEFRVRAENLQGLSEP-----ITTKEP 961
L + Y FR+ A+ +G E +TT++
Sbjct: 92 LKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
Score = 58.6 bits (142), Expect = 5e-10
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 1594 VMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQ 1653
+ + G P+ PI + DVPG P + S+ L+W P G I
Sbjct: 3 SGSSGRIGDGSPSH--PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IIL 59
Query: 1654 RYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
Y + RL + A++ + ++ +YT
Sbjct: 60 AYQITHRLNTTTAN-TATVEVLAPSARQYT 88
Score = 48.5 bits (116), Expect = 1e-06
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGY 1177
+ + G P I + VP PP + T + L+W P G I Y
Sbjct: 5 SSGRIGDGSPSH--PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 1178 KVEFRSTRT 1186
++ R T
Sbjct: 62 QITHRLNTT 70
Score = 39.3 bits (92), Expect = 0.003
Identities = 8/55 (14%), Positives = 14/55 (25%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPKFP 1938
N Y L Y FR+ A+ G+ + + +
Sbjct: 70 TTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
Score = 38.5 bits (90), Expect = 0.004
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGASEPLDPLF--P 485
I N TV P +T GL Y+FRI + G E + L
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Query: 486 DKPSPP 491
+K S P
Sbjct: 122 EKRSGP 127
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 104 bits (260), Expect = 4e-24
Identities = 43/297 (14%), Positives = 84/297 (28%), Gaps = 58/297 (19%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
AP G++V C + ++ W D +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV----SNGSVEWDGPISPYWTL---------DPESPG 50
Query: 2070 SSLRKLQIDRFSIQDT---------SFDRRQA---------APRFVIKPQSAFCYEGQSV 2111
S+ L + ++T A + + Q EGQ
Sbjct: 51 ST---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEA 107
Query: 2112 KFTCRVIAI-ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN 2170
C + +++ ++ + F+I + K+ D Y+ +
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQ--VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV 165
Query: 2171 H-YGYREEVVFLNVQRKYDLP---VIHYKNHRRA--------------NKYDVIWLHNNK 2212
+ ++L V R + P + R + L
Sbjct: 166 NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225
Query: 2213 ---EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
EI ++DF + V L + + +D+G+Y+C A ND G ++ V S
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 88.9 bits (220), Expect = 6e-19
Identities = 28/213 (13%), Positives = 50/213 (23%), Gaps = 38/213 (17%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAI-ATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
+ A + + Q EGQ C + +++
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR---------KT 136
Query: 2066 YTFYSSLRKLQIDRFSIQD----------------------TSFDRRQAAPRFVIKPQSA 2103
F+S R I + + D P+ ++P
Sbjct: 137 VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKL 196
Query: 2104 FCYEGQSVKFTCRVIAIATPTLTWFHNNQ---ELKQSVKFMKRYAGDDYTFVINRTKMED 2160
G++ + C E+ + F Y +N +D
Sbjct: 197 VRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQD 256
Query: 2161 RGEYIIRAENHYGYREEVVFLNVQRKYDLPVIH 2193
G Y A N G R + V + H
Sbjct: 257 AGIYSCVASNDVGTRTATMNFQVV---ESHHHH 286
Score = 81.9 bits (202), Expect = 1e-16
Identities = 31/272 (11%), Positives = 52/272 (19%), Gaps = 72/272 (26%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
AP G++V C + ++ W T
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV----SNGSVEWDGPISPYWTL-----DPESPGSTLT 54
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR-------------- 2198
++ G Y + L V+ D +
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVK---DPAHSWNLLAQEVTVVEGQEAVLPC 111
Query: 2199 RANKYD----VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
V + + I + DS Y C+ + E
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 2255 SFS-SCTLLVQ-------------------------------------VSWYKDGNPVSD 2276
S S L V K G+ +
Sbjct: 170 STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLE 229
Query: 2277 DPATYQFT--QIGQTYKMKILSTTLDDVGQYS 2306
P F + + + + D G YS
Sbjct: 230 IPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261
Score = 62.3 bits (151), Expect = 5e-10
Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 4/127 (3%)
Query: 1404 EAGNSEPGKQSGPVI--VEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWF 1461
+ + S + V +P + GE I
Sbjct: 162 KTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL 221
Query: 1462 ANDS--IIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
+ ++ +L + D G Y N G TAT++ +V++
Sbjct: 222 KRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
Query: 1520 RPHPPEN 1526
H +
Sbjct: 282 SHHHHHH 288
Score = 51.5 bits (123), Expect = 2e-06
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 9/124 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ G + V P+IK ++ G+ +
Sbjct: 162 KTMVNGRESTSTGIWLKVNRVHP-EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 308 TIDGKELKTDSVRTTVTSIGYH-----TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
G + + Y ++ D+G Y N G +
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV---DFQDAGIYSCVASNDVGTRTATMNF 277
Query: 363 TVLE 366
V+E
Sbjct: 278 QVVE 281
Score = 50.7 bits (121), Expect = 3e-06
Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 48/158 (30%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V W + + S TL +++G Y C D ++ L V+
Sbjct: 32 VEWDGPISPYWTLDPESPGS-----TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK 86
Query: 2265 -----------------------------------VSWYKDGNPVSDDPATYQFTQIGQT 2289
VS ++G Y F+
Sbjct: 87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR-- 144
Query: 2290 YKMKILSTTLDDVGQY--SAQMGG---IIAAFSLNVVK 2322
I + D Y + G L V +
Sbjct: 145 -GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181
Score = 48.0 bits (114), Expect = 2e-05
Identities = 17/167 (10%), Positives = 38/167 (22%), Gaps = 9/167 (5%)
Query: 616 GSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ D + +E G + + I + + S S
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST-ST 173
Query: 676 ASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVR 735
+ + + P+IK ++ G+ + G +
Sbjct: 174 GIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN 233
Query: 736 TTVTSIGYH-----TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ Y ++ D+G Y N G +
Sbjct: 234 SDFQDNYYKKVRALSL---NAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 45.3 bits (107), Expect = 1e-04
Identities = 11/150 (7%), Positives = 39/150 (26%), Gaps = 22/150 (14%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH--VPFMAFPQPA 1457
+ + + + V++ +++TV G++ + + + +
Sbjct: 69 TELEDPMAGS---TTIHLYVKD---PAHSWNLLAQEVTVVEGQEAVLPCLITD-PALKDS 121
Query: 1458 AFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPA-GFDTATLHVR 1516
T +++ ++ D Y + + + ++
Sbjct: 122 VSLMREGGRQVLRKTVY---FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
Query: 1517 VLDRPH-------PPENLHADEFAGDSLTL 1539
V P L G++ +
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIR--GEAAQI 206
Score = 43.4 bits (102), Expect = 5e-04
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 27/128 (21%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH 1475
PVI P ++ V+ GE ++ + W S D
Sbjct: 5 PVIEPSGP-----------ELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPES- 48
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH----PPENLHADE 1531
++L +N+ + G YR + T+H+ V D H + + E
Sbjct: 49 -----PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVE 103
Query: 1532 FAGDSLTL 1539
G L
Sbjct: 104 --GQEAVL 109
Score = 40.7 bits (95), Expect = 0.004
Identities = 13/136 (9%), Positives = 30/136 (22%), Gaps = 10/136 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIG-EPPPEVT 306
+ G + V +++ + G+ + V+
Sbjct: 69 TELEDPMAGS-TTIHLYVKDPAHS----WNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE-LRNTSGRDEGSFTVTVL 365
+G + I K DS TY + + N + V
Sbjct: 124 LMREGGRQVLRKTVYFFSPWRGFII---RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Query: 366 ETISKTNTTTISSKNM 381
+ + +
Sbjct: 181 RVHPEPPQIKLEPSKL 196
Score = 36.5 bits (84), Expect = 0.083
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
AP I+ +++++ G+ + V W T + +++ T
Sbjct: 4 APVIEPSGPELVVEPGE----TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTL---TTR 56
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
N ++GTY + + V +
Sbjct: 57 NA---TFKNTGTYRCTELEDPMAGSTTIHLYVKD 87
Score = 34.5 bits (79), Expect = 0.33
Identities = 18/149 (12%), Positives = 43/149 (28%), Gaps = 17/149 (11%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP I+ +++++ G+ + V W T + +++ T
Sbjct: 4 APVIEPSGPELVVEPGE----TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTL---TTR 56
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI-VPDHLKNLWNTKKSLHP------VLHCRG 800
N ++GTY + + V D + + + VL C
Sbjct: 57 NA---TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI 113
Query: 801 NHLPIMEAVKSRKPDPPEAPKVDRITKDS 829
+ ++V + + +
Sbjct: 114 TDPALKDSVSLMREGGRQVLRKTVYFFSP 142
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 105 bits (263), Expect = 4e-24
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAA-KFIPVSHNLEK--ELIRKEIDIMNQL---- 1742
Y+I++ +G GAFG V C + K G A K + N+++ E R EI ++ L
Sbjct: 16 YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIV---KNVDRYCEAARSEIQVLEHLNTTD 72
Query: 1743 ----HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQVCE 1797
+ + + FE + ++FE L G ++ I + + Q+C+
Sbjct: 73 PNSTFR--CVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICK 129
Query: 1798 AVKHMHEKNIIHLDVKPENIM-----------------CQTRNSTNVKMIDFGLATKLDP 1840
+V +H + H D+KPENI+ +T + ++K++DFG AT D
Sbjct: 130 SVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE 189
Query: 1841 NEVVKISTGTAEF-AAPEIVEREPVGFYTDMWAVG 1874
+ +ST APE++ D+W++G
Sbjct: 190 HHSTLVSTR---HYRAPEVILALGWSQPCDVWSIG 221
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 105 bits (262), Expect = 5e-24
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 17/189 (8%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI 2153
P ++ +A G V C+V W E +V +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP-SLGLTLA 217
Query: 2154 NRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY---------D 2204
N T +R AEN G E V +NV + +
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPS 277
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHV-------HTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+ WL N + ++ + L++ + ++G YT A N G++ +
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 337
Query: 2258 SCTLLVQVS 2266
S +
Sbjct: 338 SIMAAFMDN 346
Score = 81.7 bits (201), Expect = 3e-16
Identities = 28/196 (14%), Positives = 46/196 (23%), Gaps = 28/196 (14%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
P ++ +A G V C+V W E +V
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV--------MKSGGLP 210
Query: 2071 SLRKLQIDRFSIQDT-------------SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRV 2117
SL + S + + Q F Q E V
Sbjct: 211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV 270
Query: 2118 IAIATPTLTWFHNNQELKQSVKFMKRYAGDDY-------TFVINRTKMEDRGEYIIRAEN 2170
P+L W N L ++ + +N+ + G Y + A N
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 2171 HYGYREEVVFLNVQRK 2186
+G +
Sbjct: 331 PFGQASASIMAAFMDN 346
Score = 60.9 bits (147), Expect = 2e-09
Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 18/154 (11%)
Query: 1375 NSVPVPNPVHTVGNL-SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGV 1433
S +P+ T+ N+ S+ A N+ G +E V V+ + P
Sbjct: 205 KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE-------VSVQVNVSFPASV---- 253
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQL------TMNSASLVV 1487
+ T + I P P+ W N S+++++ + L T+ L +
Sbjct: 254 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ G Y L NP G +A++ +D P
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 59.4 bits (143), Expect = 6e-09
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
P +K + + + G + + Q G + W + E +++ T+ N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 334 TVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFE 386
T + N GR E S V V S T + + F
Sbjct: 219 --VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFS 269
Score = 56.7 bits (136), Expect = 5e-08
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 16/126 (12%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A N G A V V ++ + G+P P + W
Sbjct: 231 WAENDVGR-----AEVSVQ-----VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 308 TIDGKELK-TDSVRTTVTSIGYHTIVNT-----VNTKRSDSGTYHLELRNTSGRDEGSFT 361
+G L T + T + V ++G Y L N G+ S
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340
Query: 362 VTVLET 367
++
Sbjct: 341 AAFMDN 346
Score = 55.1 bits (132), Expect = 1e-07
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 681 MCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS 740
M P +K + + + G + + Q G + W + E +++
Sbjct: 151 MPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP 210
Query: 741 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVP 779
T+ N T + N GR E S +
Sbjct: 211 SLGLTLAN--VTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Score = 53.6 bits (128), Expect = 4e-07
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 42/157 (26%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPE-DSGVYTCEAFNDEGESFSSCTLL 2262
W+ E + S L +A + + + TC A ND G + S +
Sbjct: 189 QAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246
Query: 2263 VQ-----------------------------VSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
V + W +G+ +++ + +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 2294 ------ILSTTLDDVGQYS--AQ--MGGIIAAFSLNV 2320
+ T + G Y+ A G A+
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 51.3 bits (122), Expect = 2e-06
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 16/121 (13%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
A N+ G +E + ++ + G+P P + W
Sbjct: 231 WAENDVGRAE----------VSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 723 TIDGKELK-TDSVRTTVTSIGYHTIVNT-----VNTKRSDSGTYHLELRNTSGRDEGSFT 776
+G L T + T + V ++G Y L N G+ S
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340
Query: 777 I 777
Sbjct: 341 A 341
Score = 50.1 bits (119), Expect = 5e-06
Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 30/183 (16%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ +V G+D + A W + + + + + +
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDL 223
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSL----------TLYWTP 1543
+ +N G ++ V V P + A E + +L W
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVS-FPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF 282
Query: 1544 PRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAI-GSTYE----FRVMAEN 1598
GS + S ++T+ VR L + T+ + ++A N
Sbjct: 283 N----GSVLNE--------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 1599 QYG 1601
+G
Sbjct: 331 PFG 333
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 101 bits (252), Expect = 7e-24
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 26/200 (13%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD--- 2148
+PR + P + + C+V PT+ WF + + + + K R D
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 2149 -YTFVINRTKMEDRGEYIIRAENHYGY-REEVVFLNVQRKYDLPVIHYKNHR-------- 2198
+ + K +D GEY A+N G L + D + K+ R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETAL 127
Query: 2199 ----RAN---KYDVIWLHNNKEIKPSNDFAYSSVAHV-----HTLKIAEIFPEDSGVYTC 2246
+ +IW+ + + ++ + + V L I+ + P D G Y C
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Query: 2247 EAFNDEGESFSSC-TLLVQV 2265
A N G SS L+VQV
Sbjct: 188 IAQNLVGTRESSYAKLIVQV 207
Score = 94.2 bits (234), Expect = 2e-21
Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 32/215 (14%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+PR + P + + C+V PT+ WF + + + + K R D
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 2069 YSSLRKLQIDRFSIQDT------------SFDRRQA-------APRFVIKPQSAFCYEGQ 2109
+ + QD R A F ++P+ +G+
Sbjct: 68 FFY---RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE 124
Query: 2110 SVKFTC-RVIAIATPTLTWFHNNQELKQSVKFMKRYAG-----DDYTFVINRTKMEDRGE 2163
+ C I PTL W + L + D +I+ + D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184
Query: 2164 YIIRAENHYGYRE-EVVFLNVQRKYDLPVIHYKNH 2197
Y A+N G RE L VQ K H+ +H
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVK---AAAHHHHH 216
Score = 57.2 bits (138), Expect = 8e-09
Identities = 23/146 (15%), Positives = 41/146 (28%), Gaps = 44/146 (30%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSV----AHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS-S 2258
+ W + + + + ++ A + +D G Y C A N G++ S
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 2259 CTLLVQ-----------------------------------VSWYKDGNPVSDDPATYQF 2283
+L + + W KDG P+ D A
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFG 159
Query: 2284 T----QIGQTYKMKILSTTLDDVGQY 2305
+I + I + D G Y
Sbjct: 160 ASSRVRIVDGGNLLISNVEPIDEGNY 185
Score = 52.6 bits (126), Expect = 3e-07
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 24/180 (13%)
Query: 1366 KKGGDWVDANS-----VPVPNPV----HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGP 1416
K G+ V N V + T+ E + + +A N G + S
Sbjct: 44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA----VSRH 99
Query: 1417 VIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRV- 1474
++ + +D V GE + P P+P W + +DD
Sbjct: 100 ASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF 158
Query: 1475 ---HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVLDRPHPPENLH 1528
+ ++ +L++ N + D G Y+ +N G A L V+V + + H
Sbjct: 159 GASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV--KAAAHHHHH 216
Score = 51.8 bits (124), Expect = 6e-07
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 263 APVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT 322
AP+ ++ +P+I D+++K + + + G+P P + W DG+ + T+ ++
Sbjct: 1 APLA--GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58
Query: 323 VTSI--GYHTIVNTV-NTKRSDSGTYHLELRNTSG 354
G T+ K D G Y +N G
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
Score = 51.0 bits (122), Expect = 1e-06
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVE-IQFIGEPPPEVT 306
+A N+ G S + + + + KD + G+ +E G P P +
Sbjct: 87 VAKNRVG----QAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNT-----VNTKRSDSGTYHLELRNTSGRDEGSF- 360
W DG L D + + IV+ N + D G Y +N G E S+
Sbjct: 143 WIKDGVPL-DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
Query: 361 TVTVLE 366
+ V
Sbjct: 202 KLIVQV 207
Score = 51.0 bits (122), Expect = 1e-06
Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
+ + E+ +A N G + AS I L + KD + G+ +
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA----VLRDDFRVEPKDTRVAKGETALL 128
Query: 709 E-IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNT-----VNTKRSDSGTYHL 762
E G P P + W DG L D + + IV+ N + D G Y
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPL-DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Query: 763 ELRNTSGRDEGS 774
+N G E S
Sbjct: 188 IAQNLVGTRESS 199
Score = 48.3 bits (115), Expect = 9e-06
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI--GY 743
+ +P+I D+++K + + + G+P P + W DG+ + T+ ++ G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 744 HTIVNTV-NTKRSDSGTYHLELRNTSG 769
T+ K D G Y +N G
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVG 93
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 1410 PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDD 1469
G+ P I+E P D+ VK E +++ P+P WF + +
Sbjct: 4 AGQYQSPRIIEH----P-------TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVST 52
Query: 1470 SDTRVHKQLTMNSA---SLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVLDRPH- 1522
++ + H+ + A ++ + DGG+Y KN G A+L + VL R
Sbjct: 53 NEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-RDDF 111
Query: 1523 --PPENLHADEFAGDSLTL 1539
P++ + G++ L
Sbjct: 112 RVEPKDTRVAK--GETALL 128
Score = 33.3 bits (76), Expect = 0.57
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQI---GQTYKMKILSTTLDDVGQYS 2306
+ W+KDG PVS + Q + + D G+Y
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4
Length = 182
Score = 99.9 bits (249), Expect = 7e-24
Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
A + + P +GQ VK C V + P + W + ++ + + +
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 2069 YSSLRKLQIDRFSIQD-------------TSFDRR-----QAAPRFVIKPQSAFCYEGQS 2110
+ L + D T + + P F ++P+
Sbjct: 61 F-----LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAP 115
Query: 2111 VKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAE 2169
+ +C + P T+ W+ ++ V+N T + + A
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGP---------APSPSVLNVTGVTQSTMFSCEAH 166
Query: 2170 NHYGYRE-EVVFLNVQ 2184
N G +++Q
Sbjct: 167 NLKGLASSRTATVHLQ 182
Score = 96.0 bits (239), Expect = 2e-22
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 33/194 (17%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY-- 2149
A + + P +GQ VK C V + P + W + ++ + + +
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREE-VVFLNVQRKYDLPVIHYK-NHRRANK----- 2202
+ + D G Y + E+ V+L V+ +P +
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE---GVPFFTVEPKDLAVPPNAPFQ 117
Query: 2203 -----------YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND 2251
++W +I L + S +++CEA N
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTG--VTQSTMFSCEAHNL 168
Query: 2252 EGESFSSCTLLVQV 2265
+G + SS T V +
Sbjct: 169 KGLA-SSRTATVHL 181
Score = 54.0 bits (130), Expect = 5e-08
Identities = 14/140 (10%), Positives = 34/140 (24%), Gaps = 47/140 (33%)
Query: 2204 DVIWLHNNKEIKPSNDFAY--SSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
D+ W+ + ++ + S + L + + D+G Y C+ + S
Sbjct: 33 DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 92
Query: 2262 L-----------------------------------VQVSWYKDGNPVSDDPATYQFTQI 2286
L V + W++ + +
Sbjct: 93 LTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP----- 147
Query: 2287 GQTYKMKILSTTLDDVGQYS 2306
+ T + +S
Sbjct: 148 -----SVLNVTGVTQSTMFS 162
Score = 52.1 bits (125), Expect = 2e-07
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT-DSVRTTVTSIGYHTI 331
K+ + + G+ + + G P++ W DG ++ D + V+ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLE 366
++ + +RSD+G Y ++ + + +TV
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 50.6 bits (121), Expect = 9e-07
Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD-TRVHKQLTMNSASLVVKNSQR 1492
+TV G+ ++ +P W + +++ + D + L +K+ +R
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 1493 SDGGQYRLQLKNPAGFD-TATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
SD G+Y Q+++ + + + + V P P++L L
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPP--NAPFQL 118
Score = 50.2 bits (120), Expect = 1e-06
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT-DSVRTTVTSIGYHTI 746
K+ + + G+ + + G P++ W DG ++ D + V+ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 747 VNTVNTKRSDSGTYHLELRNTSG 769
++ + +RSD+G Y ++ +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGE 84
Score = 47.1 bits (112), Expect = 1e-05
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 17/118 (14%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 306
+ G +T + P KD+ + + + +G P P +
Sbjct: 78 QVEDGGE--TEISQPVWLTVE---GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
W ++ + +V ++ T + S + E N G S T TV
Sbjct: 133 WWRGTTKIGGPAPSPSVLNV----------TGVTQSTMFSCEAHNLKGLAS-SRTATV 179
Score = 44.8 bits (106), Expect = 7e-05
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQS 2054
+ P F ++P+ + +C + P T+ W+ ++
Sbjct: 96 EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP 143
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 26/124 (20%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+ Q + VE P +P +D+ V F + + P+P
Sbjct: 78 QVEDGGETEI--SQPVWLTVEGVPFFTVEP-------KDLAVPPNAPFQLSCEAVGPPEP 128
Query: 1457 AA-FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD---TAT 1512
W+ + I V+ + + + + N G TAT
Sbjct: 129 VTIVWWRGTTKIGGPAPS----------PSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 178
Query: 1513 LHVR 1516
+H++
Sbjct: 179 VHLQ 182
Score = 42.5 bits (100), Expect = 4e-04
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 16/111 (14%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 721
+ + P KD+ + + + +G P P +
Sbjct: 78 QVEDGGETEISQPVWLTV-----EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
W ++ + +V ++ T + S + E N G
Sbjct: 133 WWRGTTKIGGPAPSPSVLNV----------TGVTQSTMFSCEAHNLKGLAS 173
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding,
transferase-transfera inhibitor complex; HET: 046; 1.34A
{} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A*
3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A*
3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 102 bits (257), Expect = 1e-23
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 1665 DKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKF 1720
D + LK+ L+++G G FG V CR + TG + A K
Sbjct: 3 DPTQ------FEERHLKF----------LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKK 46
Query: 1721 IPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDE--MVLIFEFLSGGELFERITA 1778
+ S +EI+I+ L H ++ + LI E+L G L + +
Sbjct: 47 LQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQK 106
Query: 1779 PDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKL 1838
++ +++ Y Q+C+ ++++ K IH D+ NI+ + N VK+ DFGL L
Sbjct: 107 HKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENR--VKIGDFGLTKVL 164
Query: 1839 DPNEVVKISTGTAEF----AAPE-IVEREPVGFYT--DMWAVGVLAY 1878
++ E APE + E + F D+W+ GV+ Y
Sbjct: 165 PQDKEFFKVKEPGESPIFWYAPESLTESK---FSVASDVWSFGVVLY 208
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 106
Score = 96.6 bits (241), Expect = 1e-23
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
P + SP+S+ + W PPA G P+ GY + E + N L+
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTG--KEQNIEVDGLS 62
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
+ + L++ +Y R +A N GPG + +V
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV 96
Score = 86.5 bits (215), Expect = 4e-20
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P P E + + S+ ++W PP + G ++GY + + ++ V +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGP-VQGYRLFCTEVSTG--KEQNIEVDGLSYK 64
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+ L + EY+ R +A N G PG + + V
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYG---PGVSTDDITV 95
Score = 85.4 bits (212), Expect = 9e-20
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 575 TTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW 634
++ ++ P E + + W+PP G P+ Y + E
Sbjct: 2 SSGSSG-------PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKE 53
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
N + + K+ L K EY R +A N GP +D +
Sbjct: 54 QN---IEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITV 95
Score = 77.3 bits (191), Expect = 7e-17
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P P + L +P S ++W+PP G P+ Y + E +TG + V +Y
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE--VDGLSY 63
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ GL+ +Y R A N+YG + IT T+ D
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTD---DITVV---TLSDSG 102
Score = 72.3 bits (178), Expect = 4e-15
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P + + W PP G P+ Y + E+ + + +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQN--IEVDGLSYK 64
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ LK+ EY R +A N+ GPG + VT
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
Score = 70.0 bits (172), Expect = 3e-14
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P P E L+ + + +S + W P G + Y + ++ TG+ + +V G +
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLSYK 64
Query: 134 AENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 170
E L + +Y+ R A N+ G + + T D
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV---TLSDS 101
Score = 69.6 bits (171), Expect = 3e-14
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P P ENL A + S+ + W PP G + Y + + ++ + V +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE--VDGLSYK 64
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+ L + Y R +A N+YG D I D + G
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVST---DDITVVTLSDSGPSSG 106
Score = 63.0 bits (154), Expect = 6e-12
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYD 547
P P E L+ + + S ++W P G P+ Y + ++S G + L Y
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLSYK 64
Query: 548 VPRLIHRKEYLFRVKAVNSIGES 570
+ L EY R A N G
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPG 87
Score = 53.8 bits (130), Expect = 1e-08
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P E + + S+ ++W PP + G ++GY + + ++ V +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGP-VQGYRLFCTEVSTG--KEQNIEVDGLSYK 64
Query: 874 L 874
L
Sbjct: 65 L 65
Score = 47.2 bits (113), Expect = 2e-06
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
PG + V ++ SI + W P + G P+Q Y + +S K I
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQN-----IEVD 59
Query: 1679 SLKYT 1683
L Y
Sbjct: 60 GLSYK 64
Score = 41.5 bits (98), Expect = 3e-04
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP--D 486
Y + E + + + ++GL + +Y R N YG D +
Sbjct: 41 YRLFCTEVSTGKEQNIEV--DGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL 98
Query: 487 KPSPP 491
S P
Sbjct: 99 SDSGP 103
Score = 41.1 bits (97), Expect = 3e-04
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ P P Q V + + W+ P G +QGY++ T
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGK 52
Score = 40.3 bits (95), Expect = 6e-04
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
V Y L E + + N V +Y + L + +Y R A N G +
Sbjct: 38 VQGYRLFCTEVSTGKEQN-IEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV 96
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9,
KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 96.4 bits (240), Expect = 1e-23
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 1217 GRIQSPFDPPDAPS-QPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRE-RGGEWLRA 1274
G S P P Q E +S +L+W P P GY +E + GG++
Sbjct: 1 GSSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREV 59
Query: 1275 NNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
Y TV L Y RV A N+ G SK +
Sbjct: 60 --YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQ 100
Score = 93.3 bits (232), Expect = 2e-22
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P+ P L+ S +LSWK P P Y++E + G + ++ +
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV-GKETMC 67
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAK 1137
V GL N Y RV+A N+ GVS + T++
Sbjct: 68 TVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE 103
Score = 91.0 bits (226), Expect = 1e-21
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 1326 PDPPEA-PKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRK-KGGDWVDANSVPVPNPV 1383
P P + +S TLSW+ P GYI++ GG + + +
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTVP-ADGYILELDDGNGGQFREV--YVGKETM 66
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
TV L Y RV A N+ G S S ++++
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPY---SKTLVLQTSEGSG 106
Score = 89.8 bits (223), Expect = 3e-21
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P+ P L+ +S L W+ P Y++E D G++ + T
Sbjct: 9 VPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREVYVGKETMC 67
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLP 158
+ L YN RVKA NK G S
Sbjct: 68 TVDGLHFNSTYNARVKAFNKTGVSPY 93
Score = 89.1 bits (221), Expect = 5e-21
Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 166 TAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKAC 223
++ P P Q + L W P P YI+E G + +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVY 60
Query: 224 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+ T +V L Y RV A NK G SK T +
Sbjct: 61 VGKE--TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
Score = 87.9 bits (218), Expect = 1e-20
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSL 544
P+ P LE S LSW+ P P YI+E D + G + + +
Sbjct: 7 GPVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREVYVGKET 65
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESD-----TLETTKTT 579
V L Y RVKA N G S L+T++ +
Sbjct: 66 MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGS 105
Score = 87.1 bits (216), Expect = 3e-20
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 581 ARNEFDEPDAPE-KPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE 639
+ + P P + + L+WK P P YI++ + +
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV 61
Query: 640 VPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
T + L Y RV A N+ G S S +
Sbjct: 62 GKE--TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 99
Score = 80.2 bits (198), Expect = 7e-18
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 1521 PHPPE-NLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 1579
P P L +S TL W P + Y++E D N + +V T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYVGKETMCT 68
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKP 1605
V L STY RV A N+ G+S
Sbjct: 69 -VDGLHFNSTYNARVKAFNKTGVSPY 93
Score = 53.6 bits (129), Expect = 2e-08
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
Y+L++ + + Y+ K+ V L Y RVKA N G S S T
Sbjct: 41 ADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97
Score = 52.8 bits (127), Expect = 3e-08
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDP--LF 484
YI+E+ + ++ V + TV GL Y R++ N G S L
Sbjct: 42 DGYILELDDGNGGQFREV-YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQ 100
Query: 485 PDKPSPPE 492
+ S P
Sbjct: 101 TSEGSGPS 108
Score = 51.3 bits (123), Expect = 1e-07
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP 955
GY++E D +GG + + TV L +TY RV+A N G+S
Sbjct: 43 GYILELDD-GNGGQFREVY---VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY 93
Score = 50.5 bits (121), Expect = 2e-07
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 814 PDPPEA-PKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRK-KGGDWVDANSVP 866
P P + +S TLSW+ P GYI++ GG + +
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTVP-ADGYILELDDGNGGQFREVYVGK 63
Score = 50.1 bits (120), Expect = 3e-07
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 1614 AKHPFDVPGAP-GAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASM 1672
+ VP P + + +S +L W +P P YI+E + ++ +
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREV-- 59
Query: 1673 AHIPDTS 1679
+T
Sbjct: 60 YVGKETM 66
Score = 44.8 bits (106), Expect = 2e-05
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 1135 TAKFPFTVPDPP-GQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
++ VP P Q + N+ATL W +P GY +E
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQ 55
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 104 bits (259), Expect = 3e-23
Identities = 56/417 (13%), Positives = 113/417 (27%), Gaps = 53/417 (12%)
Query: 1048 PLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA----YD 1102
P V DI ++ L W + G+ + + ++ W KLS + +
Sbjct: 11 PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 1103 VFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLM 1162
L + + R+RAE S F G P++ + A ++
Sbjct: 69 SLKLNVYEEIKLRIRAEK-ENTSSW-----YEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 122
Query: 1163 WDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSR---IQGRI 1219
P T + F + G ++ ++ + L ++ +
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA 182
Query: 1220 QSPF-----------------DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYV 1262
+ P + + L W+ + + +
Sbjct: 183 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHA 242
Query: 1263 EKRERGGEWLR-------ANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTD 1315
+ G L N TT F ++ + G Y RV A + S ++
Sbjct: 243 FLKRNPGNHLYKWKQIPDCENVKTTQCVFP-QNVFQKGIYLLRVQASDGNN---TSFWSE 298
Query: 1316 IVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPP-----KHDGGARIKGYIVQKRKKGGD 1370
++ + + P + R DS + P Y + + +
Sbjct: 299 EIKFDTEIQAFLLPPVFNI-RSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSN 357
Query: 1371 WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGN-SEPGKQSGPVIVEEQPNKP 1426
+ TV NL Y + A ++ S V + +P
Sbjct: 358 --AERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNT 412
Score = 88.5 bits (218), Expect = 4e-18
Identities = 55/368 (14%), Positives = 109/368 (29%), Gaps = 42/368 (11%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDAN---SVPVPNPV 1383
P+ +VD I D+ L W G + +K G D W+ + ++
Sbjct: 10 SPQKVEVD-IIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGED 1443
+ L+ EE R+ A E +S S + Q P + L ED
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA---------ED 117
Query: 1444 FSIHVPFMAFPQPAAFW------FANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQ 1497
+I + + + W F +I + + V +++ + +
Sbjct: 118 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYC 177
Query: 1498 YRLQLKNPAG-----FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEI 1552
+++ + ++ PP + L W N ++
Sbjct: 178 LKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV 237
Query: 1553 T---NYVVEKKDYNSTVWTKV---SSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
++ + W ++ + TT V +N+ Y RV A + S +
Sbjct: 238 QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 297
Query: 1607 LTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQ-----RYIVEKRL 1661
I P + S DS + P+ G +P+ Y +
Sbjct: 298 EEIKFDTEIQA--FLLPPVFN--IRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWE 353
Query: 1662 ISDDKWIK 1669
+ + K
Sbjct: 354 NTSNAERK 361
Score = 83.9 bits (206), Expect = 1e-16
Identities = 51/394 (12%), Positives = 103/394 (26%), Gaps = 32/394 (8%)
Query: 1228 APSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNY---PTTNLN 1283
+P + EV + + L WN G + + ++ W++ + +T N
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVG--NVTFSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
F+ L + + R+ A E + K Q P+ + I
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 126
Query: 1344 LSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVN 1403
+ Y + K + + H + LS Y +V A
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGVEE--RIENIYSRHKIYKLSPETTYCLKVKAAL 184
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF---- 1459
+ G V + + + ++ + + + F
Sbjct: 185 LTSW-----KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQW 239
Query: 1460 --WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR-SDGGQYRLQLK----NPAGFDTAT 1512
F + + N + Q G Y L+++ N F +
Sbjct: 240 LHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 299
Query: 1513 LHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVW----- 1567
+ + + DS +Y P+ +G + + Y W
Sbjct: 300 IKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLI--YEIIFWENTSN 357
Query: 1568 TKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
+ V V NL + Y + A
Sbjct: 358 AERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDE 391
Score = 78.9 bits (193), Expect = 4e-15
Identities = 38/283 (13%), Positives = 81/283 (28%), Gaps = 32/283 (11%)
Query: 415 RGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMY 474
+ + + ++ + Y + + + + + + L+ Y +++ +
Sbjct: 129 KDSVMWALDGLSFTYSLVIWKNSSGVEERIEN--IYSRHKIYKLSPETTYCLKVKAALLT 186
Query: 475 G-----ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI---LHYIIE 526
S + P +V ++ L W + + ++
Sbjct: 187 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKR 246
Query: 527 KMDISRGTW---SDAGMTVSLFYDVPR-LIHRKEYLFRVKAVNSIGESD-TLETTKTTVA 581
W D + P+ + + YL RV+A + S + E T
Sbjct: 247 NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI 306
Query: 582 RNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD-----YIIQKKEKGNPYWMN 636
+ P + D + P G +P+ Y I E +
Sbjct: 307 QAFLLPPVFNIRSL-----SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE-- 359
Query: 637 ALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAG----PSEPSD 675
++ KTDV +P+L Y + A S SD
Sbjct: 360 -RKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSD 401
Score = 73.5 bits (179), Expect = 3e-13
Identities = 48/277 (17%), Positives = 83/277 (29%), Gaps = 17/277 (6%)
Query: 428 RYIIEMAEYGLDNWKTVPGF----CPKEFFTVKGLTEGKKYVFRIRTENMYGAS----EP 479
+ + + G+DNW + G K F+ L ++ RIR E +S +
Sbjct: 38 TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDS 97
Query: 480 LDPLFPDKPSPPEGPLEVSNVTKESCKLSWR--VPVDDGGAPILHYIIEKMDISRGTWSD 537
P + PPE LE + + Y + S G
Sbjct: 98 FTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER 157
Query: 538 AGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK 597
S + + +L Y +VKA + + + +E PE V
Sbjct: 158 IENIYS-RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 216
Query: 598 DWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPA-----NKTDVKIPDL 652
+++V L W + + K + ++P V ++
Sbjct: 217 VQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNV 275
Query: 653 TKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAP 689
+ Y RV A + S S+ Q FL P
Sbjct: 276 FQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLP 312
Score = 71.2 bits (173), Expect = 1e-12
Identities = 47/410 (11%), Positives = 101/410 (24%), Gaps = 42/410 (10%)
Query: 82 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 132
P + + L W + G + + + W+ +
Sbjct: 10 SPQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD-HVD 191
+ L + R++A + S S + P P V +D +
Sbjct: 68 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHLEAEDKAIV 121
Query: 192 LEWTPPKKDGGSP-ISQYIIEKKPKYGPWEKACIVPANITATSV--PDLKEGEEYEFRVI 248
+ +P KD + + L Y +V
Sbjct: 122 IHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVK 181
Query: 249 AVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT 308
A + ++ + +L +
Sbjct: 182 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLK------WDYTYANMTF 235
Query: 309 IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETI 368
+ I + N K T + +N +G + + V
Sbjct: 236 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKT----TQCVFPQNVF--QKGIYLLRVQA-- 287
Query: 369 SKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHC--RGNHLPIMEAVK 426
++ S + F+ E+ ++P N+ ++ S H + + + P+++
Sbjct: 288 --SDGNNTSFWSEEIKFDTEIQAFLLPPVF-NIRSLSDSFHIYIGAPKQSGNTPVIQDYP 344
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGA 476
Y I E + + + K TV L Y + R M
Sbjct: 345 LIYEIIFWENTSNAERKIIE--KKTDVTVPNLKPLTVYCVKARAHTMDEK 392
Score = 68.9 bits (167), Expect = 7e-12
Identities = 34/213 (15%), Positives = 61/213 (28%), Gaps = 19/213 (8%)
Query: 69 QWLHIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG---TDILHYVVEKMDMETGRWVPMG 125
+ P ++ + L+W + + ++ +W +
Sbjct: 200 KTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIP 259
Query: 126 DVSGTYTR----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 181
D T +N+ + Y RV+A + S T P
Sbjct: 260 DCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA---FLLPPVFN 316
Query: 182 VTDWGKDHVDLEWTPPKKDGGSPISQ-----YIIEKKPKYGPWEKACIVPANITATSVPD 236
+ D + PK+ G +P+ Q Y I E+ + T +VP+
Sbjct: 317 IRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAER--KIIEKKTDVTVPN 373
Query: 237 LKEGEEYEFRVIA-VNKGGPGEPSKASAPVTCK 268
LK Y + A + S S V K
Sbjct: 374 LKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406
Score = 61.2 bits (147), Expect = 2e-09
Identities = 55/392 (14%), Positives = 106/392 (27%), Gaps = 40/392 (10%)
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEYEFRV 247
L W + G+ + + + NIT+T S L EE + R+
Sbjct: 25 LRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 82
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A + S K + P++ +D I I V W
Sbjct: 83 RAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIV--------IHISPGTKDSVMW 134
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
+DG T S+ S G + + ++ E ++ + V
Sbjct: 135 ALDGLSF-TYSLVIWKNSSGVEERIENIYSRHKIYKLSP----------ETTYCLKVKAA 183
Query: 368 ISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKS 427
+ + + S E + ++ N L +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQW--LH 241
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTV----KGLTEGKKYVFRIRTENMYGASEPLD-- 481
++ L WK +P C T + + + Y+ R++ + S +
Sbjct: 242 AFLKRNPGNHLYKWKQIPD-CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI 300
Query: 482 PLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI-----LHYIIEKMDISRGTWS 536
+ + P+ +S + P G P+ L Y I + +
Sbjct: 301 KFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAER 360
Query: 537 DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIG 568
+ VP L Y + +A
Sbjct: 361 KI-IEKKTDVTVPNLKPLTVYCVKARAHTMDE 391
Score = 60.8 bits (146), Expect = 3e-09
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 10/210 (4%)
Query: 73 IPSPPEGPLKPSN--ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 130
PPE L+ + I + Y + +G + ++
Sbjct: 105 QIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSR 164
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 190
+ L Y +VKA + + P V+ +++V
Sbjct: 165 HK-IYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 223
Query: 191 DLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATSV---PDLKEGEEYE 244
L+W + + ++ + K N+ T ++ + Y
Sbjct: 224 -LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYL 282
Query: 245 FRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
RV A + S+ T F+ P
Sbjct: 283 LRVQASDGNNTSFWSEEIKFDTEIQAFLLP 312
Score = 56.6 bits (135), Expect = 6e-08
Identities = 37/367 (10%), Positives = 80/367 (21%), Gaps = 49/367 (13%)
Query: 507 LSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV-----SLFYDVPRLIHRKEYLFRV 561
L W + G + + + W + +L +E R+
Sbjct: 25 LRWNRSDESVG--NVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 82
Query: 562 KAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD 621
+A S + T + + P+ + K +
Sbjct: 83 RAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFT 142
Query: 622 YIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIM 681
Y + + + + + KI L+ Y +V A + +
Sbjct: 143 YSLVIWKNSSGVEER---IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCI 199
Query: 682 CKQRFLAPKIKTPLKDIIIKAGKIL-----NVEIQFIGEPPPEVTWTIDGKELKTDSVRT 736
++ + +L + F + G L
Sbjct: 200 KTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIP 259
Query: 737 TVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVL 796
++ V N G Y L ++ + G + W+ + +
Sbjct: 260 DCENVKTTQCVFPQNV--FQKGIYLLRVQASDGNNTSF-----------WSEEIKFDTEI 306
Query: 797 HCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPP-----KHDGGARIKGYIVQ 851
PP R DS + P Y +
Sbjct: 307 QA--------------FLLPPV--FNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEII 350
Query: 852 KRKKGGD 858
+ +
Sbjct: 351 FWENTSN 357
Score = 56.2 bits (134), Expect = 8e-08
Identities = 64/538 (11%), Positives = 120/538 (22%), Gaps = 160/538 (29%)
Query: 590 APEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---VPANKTD 646
+P+K V ++F+ L W G+ + ++ G W+ + + K +
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
L +E + R+ A E S S K + P++ +D I
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIV----- 121
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
I V W +DG T S+ S G + + ++
Sbjct: 122 ---IHISPGTKDSVMWALDGLSF-TYSLVIWKNSSGVEERIENIYSRHKIYKLSP----- 172
Query: 767 TSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRIT 826
E ++ + PV + PP +
Sbjct: 173 -----ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVEN---------ELPPPENIEVSVQ 218
Query: 827 KDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAE 886
+ L W + + VQ +L FL
Sbjct: 219 NQNYVLKWDYTYANM-----TFQVQ---------------------------WLHAFLKR 246
Query: 887 EKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR-LLEGTTYEFRVR 945
H W + + P+ + + Y RV+
Sbjct: 247 NPG--------------------NHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQ 286
Query: 946 AENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFD 1005
A + S + + +
Sbjct: 287 ASDGNNTSFWSEEIKF---------DTEIQA--------------------------FLL 311
Query: 1006 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKP 1065
PP + S + P G P+
Sbjct: 312 PPVFNIRSLSD-----SFHIYIGAPKQSGNTPVIQDYPL--------------------- 345
Query: 1066 PLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYG 1123
Y + +E+ + K+ + V L+ Y + RA
Sbjct: 346 ----------IYEIIFWENTSNAERKII--EKKTDVTVPNLKPLTVYCVKARAHTMDE 391
Score = 53.9 bits (128), Expect = 4e-07
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 42/302 (13%)
Query: 916 VPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPV------------- 962
+ +++ + + +L + R+RAE + S
Sbjct: 54 LSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPEVH 112
Query: 963 ---------VAKNQYGKELDKWT------NYDVLKEICQIHLPQIVDGKPVIAKSPFDPP 1007
+ + K+ W Y ++ + + ++ K P
Sbjct: 113 LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP 172
Query: 1008 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPL 1067
+ +V +S + P + + ++ PP+ ++ L W
Sbjct: 173 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSV--QNQNYVLKWDYTY 230
Query: 1068 DDGGSPIT---NYVVEKYESATGFWSKLSSFVRSPAYDVF---GLETNRQYRFRVRAENQ 1121
+ + ++ + W ++ + Y RV+A +
Sbjct: 231 ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 290
Query: 1122 YGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDG-GSKIQGYKVE 1180
S E T PP +++ + P+ G IQ Y +
Sbjct: 291 NNTSFWSEEIKFDTEI--QAFLLPPVFNIRS--LSDSFHIYIGAPKQSGNTPVIQDYPLI 346
Query: 1181 FR 1182
+
Sbjct: 347 YE 348
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein
kinase, proto-oncogene, phosphoprotein, disease mutation,
SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Length = 326
Score = 102 bits (255), Expect = 3e-23
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 39/260 (15%)
Query: 1637 ISLVWSKPRHDGGSPIQRYIV-----EKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYD 1691
+S HD P + D + LK+
Sbjct: 1 MSYYHHHHHHDYDIPTTENLYFQGAMGSAFEDRDPTQ------FEERHLKF--------- 45
Query: 1692 ILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
L+++G G FG V CR + TG + A K + S +EI+I+ L H +
Sbjct: 46 -LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 104
Query: 1748 INLHDAFEDDDE--MVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK 1805
+ + LI E+L G L + + ++ +++ Y Q+C+ ++++ K
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 164
Query: 1806 NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPE-IVE 1860
IH D+ NI+ + N VK+ DFGL L ++ E APE + E
Sbjct: 165 RYIHRDLATRNILVENENR--VKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTE 222
Query: 1861 REPVGFYT--DMWAVGVLAY 1878
+ F D+W+ GV+ Y
Sbjct: 223 SK---FSVASDVWSFGVVLY 239
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 98.0 bits (244), Expect = 4e-23
Identities = 38/199 (19%), Positives = 61/199 (30%), Gaps = 33/199 (16%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQSVKFMKRYAGDD 2148
Q PR V + V C + + + + W N EL + R +
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-----RKNASN 55
Query: 2149 YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR---------- 2198
+ IN+ + ED GEY + + V+ P I
Sbjct: 56 MEYRINKPRAEDSGEYHCVYHF-VSAPKANATIEVKAA---PDITGHKRSENKNEGQDAM 111
Query: 2199 ---RANKY---DVIWLHNNKEIKPSND-----FAYSSVAHVHTLKIAEI-FPEDSGVYTC 2246
++ Y + +W + F + + L I + ED G Y C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 2247 EAFNDEGESFSSCTLLVQV 2265
A N G + S L V+V
Sbjct: 172 NATNSIGSASVSTVLRVRV 190
Score = 97.6 bits (243), Expect = 5e-23
Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 36/201 (17%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQSVKFMKRYAGDD 2065
Q PR V + V C + + + + W N EL + R +
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-----RKNASN 55
Query: 2066 YTFYSSLRKLQIDRFSIQDT-----------SFDRR-----QAAPRFVIKPQSAFCYEGQ 2109
+I++ +D+ + +AAP +S EGQ
Sbjct: 56 ME-------YRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQ 108
Query: 2110 SVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY----AGDDYT--FVINRTKMEDRGE 2163
C+ + P W + + + ++YT ++N ED GE
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 2164 YIIRAENHYGYREEVVFLNVQ 2184
Y A N G L V+
Sbjct: 169 YECNATNSIGSASVSTVLRVR 189
Score = 61.4 bits (149), Expect = 2e-10
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 48/158 (30%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
W N E+ + A + +I + EDSG Y C + ++ T+ V+
Sbjct: 37 SYWTKNGVELTATRKNASN-----MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK 90
Query: 2265 ---------------------------------VSWYKDGNPVSDDPAT----YQFTQIG 2287
W K N V ++ + +
Sbjct: 91 AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150
Query: 2288 QTYKMKILSTTL-DDVGQYSAQ----MGGIIAAFSLNV 2320
++ I++ + +D G+Y +G + L V
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 52.9 bits (127), Expect = 1e-07
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV----RTTVTSI 326
AP I + G+ + + +G P PE W + + R + +
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 327 GYHTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+T +N VN D G Y N+ G S + V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 47.5 bits (113), Expect = 9e-06
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 1402 VNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1458
+ + + + V+ P R G+D ++ + +P P
Sbjct: 75 YHFVSAPK---ANATIEVKAAPDITGHK-------RSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 1459 FWFANDSIIDD----SDTRVHKQLTMNSASLVVKNSQ-RSDGGQYRLQLKNPAGFD--TA 1511
W ++ + + S R N L + N Q D G+Y N G +
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 1512 TLHVRV 1517
L VRV
Sbjct: 185 VLRVRV 190
Score = 47.5 bits (113), Expect = 9e-06
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKELKTDSVRTTVTSIGYH 329
P+I T + II + + ++ + WT +G EL +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEY--- 58
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
I + DSG YH + + + T+ V
Sbjct: 59 RI---NKPRAEDSGEYHCV-YHFVSAPKANATIEVKA 91
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV----RTTVTSIGY 743
AP I + G+ + + +G P PE W + + R + +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 744 HTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTI 777
+T +N VN D G Y N+ G S +
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
Score = 42.9 bits (101), Expect = 4e-04
Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPA--AFWFANDSIIDDS 1470
Q+ P IV + I + ++ + ++W N + +
Sbjct: 1 QNEPRIVTSE-----------EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT 49
Query: 1471 DTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH---PPENL 1527
++ + + D G+Y + A + V P +
Sbjct: 50 RKNA------SNMEYRINKPRAEDSGEYHCV-YHFVSAPKANATIEVKAAPDITGHKRSE 102
Query: 1528 HADEFAGDSLTLY 1540
+ +E G +Y
Sbjct: 103 NKNE--GQDAMMY 113
Score = 41.8 bits (98), Expect = 8e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKELKTDSVRTTVTSIGYHT 745
P+I T + II + + ++ + WT +G EL +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEY---R 59
Query: 746 IVNTVNTKRSDSGTY 760
I + DSG Y
Sbjct: 60 I---NKPRAEDSGEY 71
Score = 36.4 bits (84), Expect = 0.061
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 2263 VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS---AQMGGIIAAFSLN 2319
+ W K+G ++ + + +I +D G+Y + A ++
Sbjct: 35 MYSYWTKNGVELTAT------RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIE 88
Query: 2320 V 2320
V
Sbjct: 89 V 89
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase;
HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A*
2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 102 bits (256), Expect = 5e-23
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 33/212 (15%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQLHH 1744
+ + + +G GA+GVV + TG I A K I P L +EI I+ H
Sbjct: 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKH 68
Query: 1745 PKLINLHDAF-----EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
+I + + E+ +E+ +I E + +L I+ +S+ + ++ Q AV
Sbjct: 69 ENIITIFNIQRPDSFENFNEVYIIQELM-QTDLHRVISTQM--LSDDHIQYFIYQTLRAV 125
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEFA---- 1854
K +H N+IH D+KP N++ NS ++K+ DFGLA +D + +
Sbjct: 126 KVLHGSNVIHRDLKPSNLLI---NSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEF 182
Query: 1855 -------APEIVEREPVGF--YT---DMWAVG 1874
APE++ + Y+ D+W+ G
Sbjct: 183 VATRWYRAPEVM----LTSAKYSRAMDVWSCG 210
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 102 bits (255), Expect = 6e-23
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 39/215 (18%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAA-KFIPVSHNLEK--ELIRKEIDIMNQL---- 1742
Y+I+ +G G FG V C + G A K I N+ K E R EI+++ ++
Sbjct: 21 YEIVGNLGEGTFGKVVECLDHARGKSQVALKII---RNVGKYREAARLEINVLKKIKEKD 77
Query: 1743 ----HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQVCE 1797
+ + D F M + FE L G FE + +++ V + Q+C
Sbjct: 78 KENKFL--CVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCH 134
Query: 1798 AVKHMHEKNIIHLDVKPENIM-----------------CQTRNSTNVKMIDFGLATKLDP 1840
A++ +HE + H D+KPENI+ ++ +T++++ DFG AT
Sbjct: 135 ALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE 194
Query: 1841 NEVVKISTGTAEF-AAPEIVEREPVGFYTDMWAVG 1874
+ ++T PE++ D+W++G
Sbjct: 195 HHTTIVATR---HYRPPEVILELGWAQPCDVWSIG 226
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 94.3 bits (235), Expect = 6e-23
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
APR ++ +S GQ+ +F V + T + W+HN EL++S K T
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I +D G Y N+ G + L+V
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 84.3 bits (209), Expect = 2e-19
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+V W HN E++ S+ Y++ + V TL+I + +DSG Y N +GE+ TL V
Sbjct: 39 EVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Query: 2264 Q 2264
Sbjct: 99 T 99
Score = 69.2 bits (170), Expect = 4e-14
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
APR ++ +S GQ+ +F V + T + W+HN EL++S K T
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L+I D+
Sbjct: 66 -------LEILDCHTDDS 76
Score = 63.9 bits (156), Expect = 3e-12
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 263 APVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT 322
P T AP+I ++ + G+ + +P EV W +G EL+ S
Sbjct: 1 GPFTLD---HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHY 57
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ G T+ ++ DSGTY N G T+ V
Sbjct: 58 TNTSGVLTLE-ILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 58.8 bits (143), Expect = 2e-10
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP+I ++ + G+ + +P EV W +G EL+ S + G T+
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
++ DSGTY N G T+
Sbjct: 68 -ILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 51.9 bits (125), Expect = 5e-08
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 1415 GPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRV 1474
GP ++ P +R V G++ + + P W+ N + +S ++
Sbjct: 1 GPFTLDHAPRI----TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS-KI 55
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHVR 1516
H T +L + + D G YR N G ATL V
Sbjct: 56 HYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ 2308
+V WY +G + + +T ++IL DD G Y A
Sbjct: 39 EVKWYHNGVELQESS-KIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 102 bits (255), Expect = 7e-23
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 39/217 (17%)
Query: 1690 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQL----- 1742
+ ++ ++G G FG V C+ +A K + N++K + E DI+ ++
Sbjct: 37 FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVV---RNIKKYTRSAKIEADILKKIQNDDI 93
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQVCEAVKH 1801
++ ++ H F D M LIFE L G L+E IT +Y ++ Y ++ +A+ +
Sbjct: 94 NNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY 152
Query: 1802 MHEKNIIHLDVKPENIM-----------------------CQTRNSTNVKMIDFGLATKL 1838
+ + ++ H D+KPENI+ ST +K+IDFG AT
Sbjct: 153 LRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFK 212
Query: 1839 DPNEVVKISTGTAEF-AAPEIVEREPVGFYTDMWAVG 1874
I+T APE++ +DMW+ G
Sbjct: 213 SDYHGSIINT---RQYRAPEVILNLGWDVSSDMWSFG 246
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 100 bits (250), Expect = 1e-22
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 1665 DKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKF 1720
D I + LKY + ++G G FG V CR TG + A K
Sbjct: 16 DPTI------FEERHLKY----------ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQ 59
Query: 1721 IPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDE--MVLIFEFLSGGELFERITA 1778
+ S ++ ++EI I+ LH ++ + L+ E+L G L + +
Sbjct: 60 LQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR 119
Query: 1779 PDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKL 1838
++ + ++ Y Q+C+ ++++ + +H D+ NI+ ++ VK+ DFGLA L
Sbjct: 120 HRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAH--VKIADFGLAKLL 177
Query: 1839 DPNEVVKISTGTAEF----AAPE-IVEREPVGFYT--DMWAVGVLAY 1878
++ + + APE + + F D+W+ GV+ Y
Sbjct: 178 PLDKDYYVVREPGQSPIFWYAPESLSDNI---FSRQSDVWSFGVVLY 221
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 92.7 bits (231), Expect = 2e-22
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD- 2148
AP+ + QS +G F RV+ P W+ N ++++S + + D+
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 2149 YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
VI ED +++A N G FL VQ K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 79.6 bits (197), Expect = 1e-17
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 2204 DVIWLHNNKEIKPSNDF-AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+ W N +I+ S+ Y +V L I ++ EDS +A N GE+ S LL
Sbjct: 36 ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Query: 2263 VQ 2264
VQ
Sbjct: 96 VQ 97
Score = 65.8 bits (161), Expect = 6e-13
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
AP+ + QS +G F RV+ P W+ N ++++S + + +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW--PED 59
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
L I + +D+
Sbjct: 60 NVCE----LVIRDVTGEDS 74
Score = 60.4 bits (147), Expect = 5e-11
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 269 PRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIG 327
P APKI ++ + G + ++ +G+P PE W +G +++ +
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 328 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+V + DS + ++ N +G + V
Sbjct: 61 VCELVIR-DVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 55.0 bits (133), Expect = 5e-09
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 746
APKI ++ + G + ++ +G+P PE W +G +++ + +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDE 772
V + DS + ++ N +G
Sbjct: 65 VIR-DVTGEDSASIMVKAINIAGETS 89
Score = 53.0 bits (128), Expect = 2e-08
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ TV G D V + P P W+ N I+ SD N LV+++
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE 72
Query: 1494 DGGQYRLQLKNPAGFDT--ATLHVR 1516
D ++ N AG + A L V+
Sbjct: 73 DSASIMVKAINIAGETSSHAFLLVQ 97
Score = 43.0 bits (102), Expect = 6e-05
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ WYK+G + Y + ++ I T +D
Sbjct: 36 ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 78
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal
regulated kinase 3, serine phosphorylation, threonine
phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 99.3 bits (248), Expect = 3e-22
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
+ Y L+ +G G G+V + A K I ++ + +EI I+ +L H
Sbjct: 9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHD 68
Query: 1746 KLINLHDAF--------------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINY 1791
++ + + + + + ++ E++ +L + + E +
Sbjct: 69 NIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM-ETDLANVLEQGP--LLEEHARLF 125
Query: 1792 MRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTN--VKMIDFGLATKLDPNEVVKIS-T 1848
M Q+ +K++H N++H D+KP N+ N+ + +K+ DFGLA +DP+ K +
Sbjct: 126 MYQLLRGLKYIHSANVLHRDLKPANLFI---NTEDLVLKIGDFGLARIMDPHYSHKGHLS 182
Query: 1849 G---TAEFAAPEIVEREPVGF--YT---DMWAVG 1874
T + +P ++ + YT DMWA G
Sbjct: 183 EGLVTKWYRSPRLL----LSPNNYTKAIDMWAAG 212
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural
genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Length = 432
Score = 101 bits (253), Expect = 3e-22
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 39/222 (17%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLE-KELIRKEIDIMNQL 1742
V D+Y I IG G++G V+ ++ T A K + ++ K ++R EI I+N+L
Sbjct: 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILR-EITILNRL 82
Query: 1743 HHPKLINLHDAF-----EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
+I L+D DE+ ++ E +L + P + ++E + + +
Sbjct: 83 KSDYIIRLYDLIIPDDLLKFDELYIVLEIA-DSDLKKLFKTPIF-LTEEHIKTILYNLLL 140
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+HE IIH D+KP N + N +VK+ DFGLA ++ + I E P
Sbjct: 141 GENFIHESGIIHRDLKPANCLL---NQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEP 197
Query: 1857 EIVEREPVGFYT------------------------DMWAVG 1874
+ T D+W+ G
Sbjct: 198 GPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTG 239
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm,
cytoskeleton, disease mutation, immunoglobulin domain;
NMR {Homo sapiens}
Length = 116
Score = 92.1 bits (229), Expect = 6e-22
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 2081 SIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF 2140
+ AP F+ KPQS EG SVK C++ AI P L W NN+ ++ +
Sbjct: 3 HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62
Query: 2141 MKRYAGDD--YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ Y + T +I +D G Y + A N G L+V
Sbjct: 63 ISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 73.2 bits (180), Expect = 3e-15
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 2205 VIWLHNNKEIKPSND--FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+ W NN+ ++ + D Y TL I ++ +D+G YT A N+ G + + L
Sbjct: 47 LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 2263 VQV 2265
V
Sbjct: 107 VTA 109
Score = 67.0 bits (164), Expect = 3e-13
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 1998 SIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF 2057
+ AP F+ KPQS EG SVK C++ AI P L W NN+ ++ +
Sbjct: 3 HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62
Query: 2058 MKRYAGDDYTFYSSLRKLQIDRFSIQDT 2085
+ Y + L I + +D
Sbjct: 63 ISLYQDNTGRV-----TLLIKDVNKKDA 85
Score = 64.0 bits (156), Expect = 5e-12
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS--IGYH 329
AP + + G + +E Q PPP++ W + + ++ ++ R ++ G
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKT 371
T++ + + D+G Y + N +G + + V ++T
Sbjct: 74 TLL-IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114
Score = 57.8 bits (140), Expect = 6e-10
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS--IGYHT 745
AP + + G + +E Q PPP++ W + + ++ ++ R ++ G T
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
++ + + D+G Y + N +G + +
Sbjct: 75 LL-IKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 56.3 bits (136), Expect = 3e-09
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH-KQLTMNSASLVVKNSQR 1492
+ V G+ + A P P FW N+ ++ + R+ Q +L++K+ +
Sbjct: 23 QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK 82
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPH 1522
D G Y + N AG T + V RP+
Sbjct: 83 KDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 37.4 bits (87), Expect = 0.008
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQ-TYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSL 2318
++ W ++ V + Q + I D G Y+ A G L
Sbjct: 46 KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Query: 2319 NV 2320
+V
Sbjct: 106 DV 107
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 98.9 bits (247), Expect = 6e-22
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 39/220 (17%)
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL 1742
+ D + + G G FG V +E+ TG A K + ++ + + L
Sbjct: 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQ-IMQDLAVL 76
Query: 1743 HHPKLINLHDAF-----EDDDEM--VLIFEFLSGGELFERI---TAPDYKMSEAEVINYM 1792
HHP ++ L F D ++ ++ E++ L + ++
Sbjct: 77 HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYV-PDTLHRCCRNYYRRQVAPPPILIKVFL 135
Query: 1793 RQVCEAVKHMHEK--NIIHLDVKPENIMCQTRNSTN--VKMIDFGLATKLDPNEVVKIST 1848
Q+ ++ +H N+ H D+KP N++ N + +K+ DFG A KL P+E
Sbjct: 136 FQLIRSIGCLHLPSVNVCHRDIKPHNVLV---NEADGTLKLCDFGSAKKLSPSE-----P 187
Query: 1849 GTAEFA-----APEIVEREPVGF--YT---DMWAVG-VLA 1877
A APE++ G YT D+W+VG + A
Sbjct: 188 NVAYICSRYYRAPELI----FGNQHYTTAVDIWSVGCIFA 223
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural
genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Length = 458
Score = 100 bits (250), Expect = 8e-22
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 44/227 (19%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-VSHNLE--KELIRKEIDIMNQL 1742
+ D Y+I IGTG++G V ++ + A K I V +L K ++R EI I+N+L
Sbjct: 51 IPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILR-EIAILNRL 109
Query: 1743 HHPKLINLHD-----AFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
+H ++ + D E DE+ ++ E + + P Y ++E + + +
Sbjct: 110 NHDHVVKVLDIVIPKDVEKFDELYVVLEIA-DSDFKKLFRTPVY-LTELHIKTLLYNLLV 167
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLA-----TKLDPNEVVKISTGTA 1851
VK++H I+H D+KP N + N +VK+ DFGLA + +++
Sbjct: 168 GVKYVHSAGILHRDLKPANCLV---NQDCSVKVCDFGLARTVDYPENGNSQLPISPREDD 224
Query: 1852 EFAAPEIVEREPVGFYT------------------------DMWAVG 1874
+ T D+W++G
Sbjct: 225 MNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIG 271
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase,
PMK, STK26, stress-activated protein kinase, structural
genomics, PSI; 2.09A {Homo sapiens}
Length = 353
Score = 98.5 bits (246), Expect = 9e-22
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
+ Y +G+GA+G V ++++G A K + P + + +E+ ++ +
Sbjct: 22 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQ 81
Query: 1744 HPKLINLHDAF------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
H +I L D F + + L+ F+ +L + + SE ++ + Q+ +
Sbjct: 82 HENVIGLLDVFTPASSLRNFYDFYLVMPFM-QTDLQKIMGLK---FSEEKIQYLVYQMLK 137
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPN---EVVKISTGTAEF 1853
+K++H ++H D+KP N+ N +K++DFGLA D VV T +
Sbjct: 138 GLKYIHSAGVVHRDLKPGNLAV---NEDCELKILDFGLARHADAEMTGYVV-----TRWY 189
Query: 1854 AAPEIVEREPVGF--YT---DMWAVG 1874
APE++ + + Y D+W+VG
Sbjct: 190 RAPEVI----LSWMHYNQTVDIWSVG 211
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 91.6 bits (228), Expect = 9e-22
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
P+I +D ++AG+ + + + G P TW K+++ V + + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKL 65
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ ++ G Y L + N G + +TV++
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 89.7 bits (223), Expect = 3e-21
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ P+ + P+ G+SV+ +V T TW +++++S + +
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLP 2190
I + E G Y + EN G R+ V L V K D P
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
Score = 87.4 bits (217), Expect = 2e-20
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
D V+AGE + W I +S+ + + + N + L + +++
Sbjct: 15 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQE 73
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
G Y L ++N G A +++ V+D+P PP
Sbjct: 74 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
Score = 84.7 bits (210), Expect = 2e-19
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P+I +D ++AG+ + + + G P TW K+++ V + + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKL 65
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ ++ G Y L + N G + +
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 70.0 bits (172), Expect = 3e-14
Identities = 14/61 (22%), Positives = 20/61 (32%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W+ K+I+ S + + L I E G YT N G + L V
Sbjct: 38 TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Query: 2264 Q 2264
Sbjct: 98 V 98
Score = 58.1 bits (141), Expect = 5e-10
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ P+ + P+ G+SV+ +V T TW +++++S + +
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 2068 F 2068
Sbjct: 65 L 65
Score = 38.5 bits (90), Expect = 0.003
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQM----GGIIAAFSLN 2319
+W K + + + K+ IL+ + G Y+ + G A +L
Sbjct: 38 TCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Query: 2320 VV 2321
VV
Sbjct: 97 VV 98
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA;
1.95A {Leishmania major}
Length = 362
Score = 98.5 bits (246), Expect = 1e-21
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 31/211 (14%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL-----------IRK 1734
+ Y + I +G++G V + G A K + + + + + + +
Sbjct: 20 MQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLR 78
Query: 1735 EIDIMNQLHHPKLINLHDAF-----EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVI 1789
EI ++N HHP ++ L D F ++ L+ E + +L + I +S +
Sbjct: 79 EIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELM-RTDLAQVIHDQRIVISPQHIQ 137
Query: 1790 NYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKIST 1848
+M + + +HE ++H D+ P NI+ ++ + DF LA + +
Sbjct: 138 YFMYHILLGLHVLHEAGVVHRDLHPGNILL---ADNNDITICDFNLAREDTADANKTHYV 194
Query: 1849 GTAEFAAPEIVEREPVGF--YT---DMWAVG 1874
+ APE+V + F +T DMW+ G
Sbjct: 195 THRWYRAPELV----MQFKGFTKLVDMWSAG 221
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 97.4 bits (243), Expect = 1e-21
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 45/232 (19%)
Query: 1665 DKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV- 1723
D + LK + ++G G FG V T + V
Sbjct: 24 DPTV------FHKRYLK----------KIRDLGEGHFGKVSLYCYDPTND---GTGEMVA 64
Query: 1724 --------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDE--MVLIFEFLSGGELF 1773
+ EIDI+ L+H +I ED + L+ E++ G L
Sbjct: 65 VKALKADAGPQHRSGWKQ-EIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLR 123
Query: 1774 ERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFG 1833
+ + P + + A+++ + +Q+CE + ++H ++ IH D+ N++ VK+ DFG
Sbjct: 124 DYL--PRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRL--VKIGDFG 179
Query: 1834 LATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT--DMWAVGVLAY 1878
LA + + APE + E + FY D+W+ GV Y
Sbjct: 180 LAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYK---FYYASDVWSFGVTLY 228
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 91.2 bits (226), Expect = 1e-21
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 9/118 (7%)
Query: 1311 SKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-----KR 1365
S + + K P P V ++T S+ L W + + + ++ +
Sbjct: 3 SGSSGMEPHKVVP--LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEED 60
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
K + H V L Y FR+ + +G E E
Sbjct: 61 PKMHSYGVI--YTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 89.6 bits (222), Expect = 5e-21
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 1213 SRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-----KRER 1267
S G P P P V + S+ L W+ + ++ + +
Sbjct: 3 SGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62
Query: 1268 GGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQ 1322
+ Y V L Y+FR+ + +G + S + +E
Sbjct: 63 MHSYGVI--YTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 86.5 bits (214), Expect = 7e-20
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-----KKPKYGPWEKACIVPAN 228
+P P V ++L W +K+ + + + PK + I
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV--IYTGY 73
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
T V L+ Y+FR+ + G E S + T +
Sbjct: 74 ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114
Score = 84.6 bits (209), Expect = 3e-19
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPIT----NYVVEKYESATGFWSKLSS 1094
S P P+ V +T S L W + + +E+ + + + +
Sbjct: 13 VVPLSKPHPPV-VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71
Query: 1095 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
+ + V GLE Y+FR++ + G E + + T T P
Sbjct: 72 -GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT-----TRESGP 117
Score = 80.4 bits (198), Expect = 8e-18
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI----LHYIIEKMDISRGTWSDAGM 540
KP PP V VT S +L W + + L + IE+ D ++
Sbjct: 16 LSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71
Query: 541 TVSLFYDVPRLIHRKEYLFRVKAVNSIGESD-----TLETTK 577
+ + V L R Y FR+K + GE + ++ TT+
Sbjct: 72 GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113
Score = 80.4 bits (198), Expect = 8e-18
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 1504 NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEIT----NYVVEK 1559
+ V L +PHPP S+ LYW + + +E+
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPVVGKVTH---HSIELYWDLEQKEKRQGPQEQWLRFSIEE 58
Query: 1560 KDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
+D + + + T V V L + Y+FR+ + G +
Sbjct: 59 EDPKMHSYGVIYTGYATRHV-VEGLEPRTLYKFRLKVTSPSGEYEY 103
Score = 80.4 bits (198), Expect = 9e-18
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 11/117 (9%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD----YI 623
G S + V P P V ++L W + + +
Sbjct: 1 GSSGSSGMEPHKV-----VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFS 55
Query: 624 IQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
I++++ + T + L Y+FR+ + +G E S +
Sbjct: 56 IEEEDPKMHSYGVI--YTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVA 110
Score = 78.1 bits (192), Expect = 5e-17
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI----LHYVVEKMDMETGRWVPMGDVSG 129
S P P+ +T S L W + + L + +E+ D + + +
Sbjct: 16 LSKPHPPVV-GKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYA 74
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
T E L Y FR+K + GE S T ++
Sbjct: 75 TRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 73.5 bits (180), Expect = 2e-15
Identities = 22/154 (14%), Positives = 39/154 (25%), Gaps = 60/154 (38%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P V ++T S+ L W + + + ++
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLR---------------------- 53
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+ IE+ D + + Y V
Sbjct: 54 ----------------------------FSIEEED-PKMHSYGVI---YTGYATRHVVEG 81
Query: 934 LLEGTTYEFRVRAENLQGLSEP------ITTKEP 961
L T Y+FR++ + G E TT+E
Sbjct: 82 LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 50.7 bits (121), Expect = 2e-07
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL--FP 485
R+ IE + + ++ + V+GL Y FR++ + G E +
Sbjct: 53 RFSIEEEDPKMHSYGVI-YTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111
Query: 486 DKPSPP 491
+ S P
Sbjct: 112 TRESGP 117
Score = 47.6 bits (113), Expect = 2e-06
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 1614 AKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
H P P T SI L W + + Q + + +D
Sbjct: 9 EPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62
Score = 46.9 bits (111), Expect = 4e-06
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 5/60 (8%)
Query: 1123 GVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
G S S P P + ++ L WD + + Q + F
Sbjct: 1 GSSGS-----SGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFS 55
Score = 41.9 bits (98), Expect = 3e-04
Identities = 10/65 (15%), Positives = 21/65 (32%)
Query: 1874 GVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
L + ++ + Y ++V L Y+FR+K + +G + S
Sbjct: 50 QWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSV 109
Query: 1934 RPKFP 1938
Sbjct: 110 ATTRE 114
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 90.9 bits (226), Expect = 1e-21
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYP 1278
S P +SVSL W P G I Y ++ E+ E +
Sbjct: 4 GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK 62
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
TV L+ G +Y F+V A AG G+ S+ ++ + P P
Sbjct: 63 AVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEV--------ETGKPSGP 108
Score = 80.9 bits (200), Expect = 4e-18
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P + +R + SV+L W+ P+ G I Y ++ +K + +++ T
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRAT 69
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE-EQPNKP 1426
V L G Y F+V A AG G+ S + VE +P+ P
Sbjct: 70 VSGLKPGTRYVFQVRARTSAG---CGRFSQAMEVETGKPSGP 108
Score = 72.4 bits (178), Expect = 5e-15
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P + G+ V L W+ P G I +Y I+ EK + + A T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKAVTT 66
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
+ L G Y F+V A AG S A ++
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEV 100
Score = 68.1 bits (167), Expect = 1e-13
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 231
P + G+ V L W P++ G I +Y I+ K + + A T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
+V LK G Y F+V A G G S+A T KP
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105
Score = 65.1 bits (159), Expect = 1e-12
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
PS + S SL W+ P G I Y ++ YE S + +
Sbjct: 9 AAPSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTT 66
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
V GL+ +Y F+VRA G S + P P
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCGRF-----SQAMEVETGKPSGP 108
Score = 59.3 bits (144), Expect = 2e-10
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P + + S++L W P G I Y ++ + + + + + T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGA 1626
V L G+ Y F+V A G + + ++ + P P +
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFS---QAMEVE--TGKPSGPSS 110
Score = 53.1 bits (128), Expect = 2e-08
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P + +R + SV+L W+ P+ G I Y ++ +K + +++ T
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRAT 69
Query: 874 L 874
+
Sbjct: 70 V 70
Score = 52.4 bits (126), Expect = 4e-08
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE-KMDISRGTWSDAGMTVS 543
PS + + S L W+ P G IL Y I+ V+
Sbjct: 8 QAAPSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVT 65
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
V L Y+F+V+A S G + + +P P
Sbjct: 66 TRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET-----GKPSGP 108
Score = 52.4 bits (126), Expect = 4e-08
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSGTYT 132
PS ++ ++S +L W+ P G IL Y ++ + + T
Sbjct: 11 PSQVVV-IRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTLKAVTTRA 68
Query: 133 RAENLIEGHDYNFRVKAVNKIGES 156
L G Y F+V+A G
Sbjct: 69 TVSGLKPGTRYVFQVRARTSAGCG 92
Score = 43.5 bits (103), Expect = 5e-05
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWI 1668
P + + + S+SL+W +P G I Y ++ +
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQS 57
Score = 36.6 bits (85), Expect = 0.013
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
P + + +L+W P G I Y++++
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYY 49
Score = 36.2 bits (84), Expect = 0.021
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
D + + V L G Y F+V+A+ +AG + S
Sbjct: 52 DKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQA 97
Score = 34.6 bits (80), Expect = 0.081
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP--D 486
Y I+ E + TV GL G +YVF++R G +
Sbjct: 44 YEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 103
Query: 487 KPSPP 491
KPS P
Sbjct: 104 KPSGP 108
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase
inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB:
4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A*
Length = 302
Score = 96.6 bits (241), Expect = 1e-21
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 43/239 (17%)
Query: 1658 EKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFA 1717
+K D H LK + ++G G FG V CR G+
Sbjct: 7 KKPATEVDPT------HFEKRFLKR----------IRDLGEGHFGKVELCRYDPEGD--- 47
Query: 1718 AKFIPV---------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDE--MVLIFEF 1766
V N +L + EI+I+ L+H ++ +D + LI EF
Sbjct: 48 NTGEQVAVKSLKPESGGNHIADLKK-EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEF 106
Query: 1767 LSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTN 1826
L G L E + K++ + + Y Q+C+ + ++ + +H D+ N++ ++ +
Sbjct: 107 LPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQ-- 164
Query: 1827 VKMIDFGLATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT--DMWAVGVLAY 1878
VK+ DFGL ++ ++ + APE +++ + FY D+W+ GV +
Sbjct: 165 VKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK---FYIASDVWSFGVTLH 220
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 90.0 bits (224), Expect = 2e-21
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMK-RYAGDDY 2149
+A P F + EGQ V + RV P ++W N Q ++ + G
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I + D G Y +A N YG R+ L V+
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 80.0 bits (198), Expect = 6e-18
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2205 VIWLHNNKEIKPSND-FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V WL N + ++P FA + + L+I D+G YTC+A N+ G L V
Sbjct: 37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Query: 2264 Q 2264
+
Sbjct: 97 R 97
Score = 65.8 bits (161), Expect = 7e-13
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+A P F + EGQ V + RV P ++W N Q ++ + A
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG-- 60
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L +L+I D
Sbjct: 61 ----LCRLRILAAERGDA 74
Score = 59.6 bits (145), Expect = 8e-11
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
P K L D ++ G+ + + I+ GEP P V+W + + ++ D R + G
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + +R D+G Y + N G + + V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 56.9 bits (138), Expect = 7e-10
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
D +V+ G+D + + P+P W N + R ++ L + ++R
Sbjct: 13 MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERG 72
Query: 1494 DGGQYRLQLKNPAGFD--TATLHVR 1516
D G Y + N G A L VR
Sbjct: 73 DAGFYTCKAVNEYGARQCEARLEVR 97
Score = 56.5 bits (137), Expect = 1e-09
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P K L D ++ G+ + + I+ GEP P V+W + + ++ D R + G +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDE 772
+ +R D+G Y + N G +
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQ 89
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
VSW ++ PV D + G +++IL+ D G Y+
Sbjct: 36 VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 93.7 bits (233), Expect = 3e-21
Identities = 36/204 (17%), Positives = 58/204 (28%), Gaps = 27/204 (13%)
Query: 2086 SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMK--R 2143
S + PR V P +G+ C+ TPT+ W+ + ++ + R
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 2144 YAGDD-----YTFVINRTKMEDRGEYIIRAENHYGY-REEVVFLNVQRKYDLPVIHYKNH 2197
V R D G Y+ A N+ G L V D + +
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 2198 R-----------RANKYD----VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSG 2242
+ + + W + + ++ L I D+G
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER---ITIRGGKLMITYTRKSDAG 178
Query: 2243 VYTCEAFNDEGESFSS-CTLLVQV 2265
Y C N GE S L V
Sbjct: 179 KYVCVGTNMVGERESEVAELTVLE 202
Score = 93.0 bits (231), Expect = 5e-21
Identities = 38/213 (17%), Positives = 64/213 (30%), Gaps = 31/213 (14%)
Query: 2003 SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMK--R 2060
S + PR V P +G+ C+ TPT+ W+ + ++ + R
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQD-------------TSFDRR------QAAPRFVIKPQ 2101
+ + ++ R S D + F P
Sbjct: 62 MLLPSGSLFFL--RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119
Query: 2102 SAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMED 2160
G+ C+ PT++W + L +R +I T+ D
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK---DERITIRGGKLMITYTRKSD 176
Query: 2161 RGEYIIRAENHYGYRE-EVVFLNVQRKYDLPVI 2192
G+Y+ N G RE EV L V + P
Sbjct: 177 AGKYVCVGTNMVGERESEVAELTVLER---PSF 206
Score = 61.7 bits (150), Expect = 2e-10
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 16/160 (10%)
Query: 1372 VDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLS 1431
+ + S+ VH + + Y +A N G + S +E +
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVC--VARNYLGEA----VSHDASLEVAILRDDF-RQ 116
Query: 1432 GVRDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNS 1490
D+ V GE + P P+P W + S +DD D R+ T+ L++ +
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI----TIRGGKLMITYT 172
Query: 1491 QRSDGGQYRLQLKNPAGFD-TATLHVRVLDRPH---PPEN 1526
++SD G+Y N G + + VL+RP +
Sbjct: 173 RKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAAH 212
Score = 54.8 bits (132), Expect = 5e-08
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 48/220 (21%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
GE L C++ GRP PT+ W K G + + +
Sbjct: 24 GEPATLNCKA-------EGRP----TPTIE-WYKG-------------GERVETDKDDPR 58
Query: 214 PKYGPWEKACIVPAN---ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
++P+ +E + +A N G S + +
Sbjct: 59 SHRM------LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG----EAVSHDASLEVA 108
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 327
+ + D+++ G+ ++ G P P ++W DG L R T+ G
Sbjct: 109 ILRDDFRQNPSDVMVAVGE--PAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG-G 165
Query: 328 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF-TVTVLE 366
I T++SD+G Y N G E +TVLE
Sbjct: 166 KLMI---TYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 54.0 bits (130), Expect = 9e-08
Identities = 28/145 (19%), Positives = 40/145 (27%), Gaps = 47/145 (32%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVA-------HVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
+ W + ++ D S + D GVY C A N GE+
Sbjct: 40 TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Query: 2257 SSCTLLV------------------------------------QVSWYKDGNPVSDDPAT 2280
S L +SW KDG+P+ D
Sbjct: 100 SHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL--DDKD 157
Query: 2281 YQFTQIGQTYKMKILSTTLDDVGQY 2305
+ T G + I T D G+Y
Sbjct: 158 ERITIRGGK--LMITYTRKSDAGKY 180
Score = 52.1 bits (125), Expect = 4e-07
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 683 KQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV----RTTV 738
+Q P+I D+I+ G+ + + G P P + W G+ ++TD +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 739 TSIG--YHTIVNTVNTKRSDSGTYHLELRNTSG 769
G + + R D G Y RN G
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 51.7 bits (124), Expect = 5e-07
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPE 719
+A N G + DAS + L + D+++ G+ ++ G P P
Sbjct: 90 VARNYLGEAVSHDASLEVA----ILRDDFRQNPSDVMVAVGE--PAVMECQPPRGHPEPT 143
Query: 720 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 774
++W DG L R T+ G I T++SD+G Y N G E
Sbjct: 144 ISWKKDGSPLDDKDERITIRG-GKLMI---TYTRKSDAGKYVCVGTNMVGERESE 194
Score = 51.3 bits (123), Expect = 8e-07
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 268 KPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV----RTTV 323
+ P+I D+I+ G+ + + G P P + W G+ ++TD +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 324 TSIG--YHTIVNTVNTKRSDSGTYHLELRNTSG 354
G + + R D G Y RN G
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 45.2 bits (107), Expect = 9e-05
Identities = 16/111 (14%), Positives = 25/111 (22%), Gaps = 29/111 (26%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
F P G+ C+ PT++W + L + + G
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---- 166
Query: 2069 YSSLRKLQIDRFSIQDT---------SFDRRQAA---------PRFVIKPQ 2101
L I D R++ P FV
Sbjct: 167 ------LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAA 211
Score = 38.6 bits (90), Expect = 0.010
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 26/140 (18%)
Query: 1412 KQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII--DD 1469
+ P IVE P D+ V GE +++ P P W+ + D
Sbjct: 6 EDFPPRIVEH----P-------SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
Query: 1470 SDTRVHKQLTMNSA----SLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVLDRPH 1522
D R H+ L + + +V R D G Y +N G A+L V +L R
Sbjct: 55 DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL-RDD 113
Query: 1523 ---PPENLHADEFAGDSLTL 1539
P ++ G+ +
Sbjct: 114 FRQNPSDVMVAV--GEPAVM 131
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 90.1 bits (224), Expect = 3e-21
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNY 1277
+ + P P + S +S+ L+W PP + I Y + ++ GE R
Sbjct: 11 VITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIE 67
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
P T+ + + L+ Y FR+ A + G G + + + P +
Sbjct: 68 PGTS--YRLQGLKPNSLYYFRLAARSPQGLGASTAEISA-----RTMQSSGPSS 114
Score = 80.8 bits (200), Expect = 6e-18
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G S +Q Q P P K + ++ S+ LSW PP+ D I Y + +
Sbjct: 1 GSSGSSGD---IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYK 54
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+ P + + L Y FR+ A + G G + +
Sbjct: 55 DGEHGE-EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQG---LGASTAEISA 104
Score = 76.2 bits (188), Expect = 2e-16
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P P + E + L+W PP +D I +Y + K+ + T
Sbjct: 16 GVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI--TIEPGT 70
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
++ L Y FR+ A + G +
Sbjct: 71 SYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
Score = 72.8 bits (179), Expect = 3e-15
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
P P + S LSW PP D I NY + + G +++
Sbjct: 16 GVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRIT-IEPGT 70
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEP 1127
+Y + GL+ N Y FR+ A + G+
Sbjct: 71 SYRLQGLKPNSLYYFRLAARSPQGLGAS 98
Score = 71.2 bits (175), Expect = 1e-14
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 1511 ATLHVRVL-DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK 1569
+ V P P N A+ + S+ L WTPPR + I NY + KD +
Sbjct: 7 GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SDT--IANYELVYKDGEHGEEQR 63
Query: 1570 VSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK-HPFDVPGA 1623
++ T + ++ L S Y FR+ A + GL I A+ P +
Sbjct: 64 ITIEPGTSYR-LQGLKPNSLYYFRLAARSPQGLGAS---TAEISARTMQSSGPSS 114
Score = 68.1 bits (167), Expect = 1e-13
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 222
I G P +P + + L WTPP+ D I+ Y + K E+
Sbjct: 7 GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQR 63
Query: 223 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ + + LK Y FR+ A + G G + + T
Sbjct: 64 ITIEPGTSYR-LQGLKPNSLYYFRLAARSPQGLGASTAEISART 106
Score = 64.3 bits (157), Expect = 3e-12
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P P K +++S L W PR D I +Y + D E G + GT
Sbjct: 17 VPGQPLN-FKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEPGTSY 72
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLP 158
R + L Y FR+ A + G
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLGAS 98
Score = 60.8 bits (148), Expect = 6e-11
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 475 GASEPLDPLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI 530
G+S + P P + ++ S LSW P D I +Y + D
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDG 56
Query: 531 SRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDA 590
G + Y + L Y FR+ A + G + T + + + P +
Sbjct: 57 EHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS--TAEISARTMQSSGPSS 114
Score = 49.6 bits (119), Expect = 5e-07
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
I+ VPG P K +E SI L W+ PR D I Y + + + +
Sbjct: 7 GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQR 63
Query: 1670 ASMAHIPDTSLK 1681
++ P TS +
Sbjct: 64 ITIE--PGTSYR 73
Score = 46.9 bits (112), Expect = 4e-06
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVP 866
P P K + ++ S+ LSW PP+ D I Y + + ++
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIE 67
Score = 39.2 bits (92), Expect = 0.002
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 1874 GVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ Y L + + + +Y + L Y FR+ A++ G ++
Sbjct: 45 TIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISA 104
Query: 1934 R 1934
R
Sbjct: 105 R 105
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----- 955
Y + +D HG + L + Y FR+ A + QGL
Sbjct: 48 NYELVYKDGEHG----EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEIS 103
Query: 956 ITTKEPVV 963
T +
Sbjct: 104 ARTMQSSG 111
Score = 36.9 bits (86), Expect = 0.013
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 1133 SITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
I VP P + + L W PR+D I Y++ ++
Sbjct: 8 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDG 56
Score = 36.2 bits (84), Expect = 0.021
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP 479
Y + + + + P + ++GL Y FR+ + G
Sbjct: 49 YELVYKDGEHGEEQRIT-IEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS 98
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 98.8 bits (246), Expect = 3e-21
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
V Y L+ IG+GA G+V + A K + P + + +E+ +M ++
Sbjct: 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN 119
Query: 1744 HPKLINLHDAF------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
H +I+L + F E+ ++ L+ E + L + I + + + Q+
Sbjct: 120 HKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQME---LDHERMSYLLYQMLC 175
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+KH+H IIH D+KP NI+ S +K++DFGLA + ++ T + AP
Sbjct: 176 GIKHLHSAGIIHRDLKPSNIVV---KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 232
Query: 1857 EIVEREPVGFYTDMWAVG 1874
E++ D+W+VG
Sbjct: 233 EVILGMGYKENVDIWSVG 250
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 90.4 bits (224), Expect = 4e-21
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPAN--------HGGRPITGYYVEKRERGGEWLRAN 1275
+P + +V L W+PP++ + GY V G + +
Sbjct: 16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 1276 NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV 1334
Y N T++DL+ Y +V A + G PS+ +PD P P++
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA---EIFTTLSCEPDIPNPPRI 131
Score = 77.3 bits (190), Expect = 1e-16
Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 12/126 (9%)
Query: 1036 RPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS--------PITNYVVEKYESATG 1087
+ S P SDI + L+W PP + Y V +
Sbjct: 12 KAFEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD 70
Query: 1088 FWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
K + L+ Y +V+AE P E + PD P
Sbjct: 71 GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE---AEIFTTLSCEPDIPN 127
Query: 1148 QPQIVD 1153
P+I
Sbjct: 128 PPRISG 133
Score = 74.3 bits (182), Expect = 2e-15
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 11/124 (8%)
Query: 1311 SKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGAR--------IKGYIV 1362
S + + K + P I +V L+W PP + GY V
Sbjct: 3 SGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEV 62
Query: 1363 QKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ 1422
G D + T+ +L +Y +V A + P S I
Sbjct: 63 LISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIFTTL 119
Query: 1423 PNKP 1426
+P
Sbjct: 120 SCEP 123
Score = 67.7 bits (165), Expect = 4e-13
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 13/122 (10%)
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGA--------PILHYIIEKMDISR-GT 534
F S P S++ + L+W P + Y + + G
Sbjct: 14 FEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGK 72
Query: 535 WSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKP 594
+ + + L +Y +V+A + + ++ + EPD P P
Sbjct: 73 YKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKG---TPSEAEIFTTLSCEPDIPNPP 129
Query: 595 TV 596
+
Sbjct: 130 RI 131
Score = 67.3 bits (164), Expect = 5e-13
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 15/117 (12%)
Query: 568 GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGS--------PI 619
G S ET KP D V L W PP + +
Sbjct: 4 GSSGDEETKAFE------ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPEL 57
Query: 620 TDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
Y + G ++ +T++ + DL +Y +V A + PS+A
Sbjct: 58 YGYEVLISSTGKDGKYKSV-YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
Score = 66.9 bits (163), Expect = 6e-13
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--------ILHYVVEKMDM-ETGRWVP 123
+ S P S+I + L W P + + Y V + G++
Sbjct: 17 LLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 124 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 183
+ T +L DY+ +V+A + P PD P P ++
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPS---EAEIFTTLSCEPDIPNPPRIS 132
Query: 184 D 184
Sbjct: 133 G 133
Score = 65.8 bits (160), Expect = 2e-12
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS--------PISQYIIEKKP 214
K +P +D V L W+PP + Y +
Sbjct: 7 GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66
Query: 215 KYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT--CKP-RF 271
+ + T ++ DLK +Y +V A G PS+A T C+P
Sbjct: 67 TGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126
Query: 272 VAPKIKTP 279
P+I P
Sbjct: 127 NPPRISGP 134
Score = 64.2 bits (156), Expect = 6e-12
Identities = 18/126 (14%), Positives = 30/126 (23%), Gaps = 11/126 (8%)
Query: 1516 RVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSE--------ITNYVVEKKDYNSTVW 1567
A + ++ L W+PP E + Y V
Sbjct: 13 AFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGK 72
Query: 1568 TKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAP 1627
K + + +L Y +V AE P + P P P
Sbjct: 73 YKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIFTTLSCEPDIPNPP 129
Query: 1628 KGVDST 1633
+ +
Sbjct: 130 RISGPS 135
Score = 54.2 bits (130), Expect = 2e-08
Identities = 18/145 (12%), Positives = 29/145 (20%), Gaps = 49/145 (33%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P I +V L+W PP V +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELY------------------- 58
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
GY + G + + + + T+
Sbjct: 59 ---------------------------GYEVLISSTGKDGKY---KSVYVGEETNITLND 88
Query: 934 LLEGTTYEFRVRAENLQGLSEPITT 958
L Y +V+AE P
Sbjct: 89 LKPAMDYHAKVQAEYNSIKGTPSEA 113
Score = 41.5 bits (97), Expect = 4e-04
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 410 PVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIR 469
P G Y + ++ G D + T+ L Y +++
Sbjct: 41 PSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQ 100
Query: 470 TENMYGASEPLDPLF-------PDKPSPP 491
E P + PD P+PP
Sbjct: 101 AEYNSIKGTPSEAEIFTTLSCEPDIPNPP 129
Score = 37.7 bits (87), Expect = 0.011
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 1874 GVLAYVLDVAE-DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS--- 1929
+ Y + ++ + + + Y+ ++ ++ L DY +V+A+ + PS
Sbjct: 56 ELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI 115
Query: 1930 --TSKERPKFP 1938
T P P
Sbjct: 116 FTTLSCEPDIP 126
Score = 37.3 bits (86), Expect = 0.013
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 8/68 (11%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGS--------PIQRYIVEKRL 1661
+ K + P D ++ L WS P + Y V
Sbjct: 7 GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66
Query: 1662 ISDDKWIK 1669
D K
Sbjct: 67 TGKDGKYK 74
Score = 35.0 bits (80), Expect = 0.083
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 36/136 (26%)
Query: 1132 NSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSK--------IQGYKVEFRS 1183
K + +P D L W P + + + GY+V S
Sbjct: 7 GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66
Query: 1184 T--------------RTATDCGL----GYQ---QCHADVGQTPHGWWLQDSRIQGRIQSP 1222
T T L Y Q + + +
Sbjct: 67 TGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI-------FTTL 119
Query: 1223 FDPPDAPSQPEVTGYS 1238
PD P+ P ++G S
Sbjct: 120 SCEPDIPNPPRISGPS 135
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 96.6 bits (241), Expect = 5e-21
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQLHH 1744
V Y L IG GA+G+V + A K I P H + +EI I+ + H
Sbjct: 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRH 84
Query: 1745 PKLINLHDAF-----EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAV 1799
+I ++D E ++ ++ + + +L++ + +S + ++ Q+ +
Sbjct: 85 ENIIGINDIIRAPTIEQMKDVYIVQDLM-ETDLYKLLKTQH--LSNDHICYFLYQILRGL 141
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKIS-TG---TAEFA 1854
K++H N++H D+KP N++ N+T ++K+ DFGLA DP+ T T +
Sbjct: 142 KYIHSANVLHRDLKPSNLLL---NTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 1855 APEIVEREPVGF--YT---DMWAVG 1874
APEI+ + YT D+W+VG
Sbjct: 199 APEIM----LNSKGYTKSIDIWSVG 219
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 94.4 bits (235), Expect = 6e-21
Identities = 25/196 (12%), Positives = 50/196 (25%), Gaps = 34/196 (17%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHH 1744
Y +L G + + A F+ L + ++++
Sbjct: 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDK 90
Query: 1745 PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
P + + D +++ E++ GG L E S I M+ + A H
Sbjct: 91 PGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHR 147
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPV 1864
+ P + +V + +P
Sbjct: 148 AGVALSIDHPSRVR--VSIDGDVVLAYPATMPDANP------------------------ 181
Query: 1865 GFYTDMWAVGVLAYVL 1880
D+ +G Y L
Sbjct: 182 --QDDIRGIGASLYAL 195
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase; HET:
BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X*
2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A*
2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A*
3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 96.2 bits (240), Expect = 6e-21
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 32/206 (15%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
V + Y L +G+GA+G V + KTG A K + P + + +E+ ++ +
Sbjct: 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK 86
Query: 1744 HPKLINLHDAF------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
H +I L D F E+ +++ L+ + G +L + K+++ V + Q+
Sbjct: 87 HENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILR 143
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPN---EVVKISTGTAEF 1853
+K++H +IIH D+KP N+ N +K++DFGLA V T +
Sbjct: 144 GLKYIHSADIIHRDLKPSNLAV---NEDCELKILDFGLARHTADEMTGYVA-----TRWY 195
Query: 1854 AAPEIVEREPVGF--YT---DMWAVG 1874
APEI+ + + Y D+W+VG
Sbjct: 196 RAPEIM----LNWMHYNQTVDIWSVG 217
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of
fibronectin-III domains, FOU fibronectin-III domains PER
chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A*
1egj_A* 1c8p_A
Length = 419
Score = 97.4 bits (241), Expect = 6e-21
Identities = 52/385 (13%), Positives = 111/385 (28%), Gaps = 31/385 (8%)
Query: 1237 YSPSSVSLAWNPPANHGGR-PITGYY---VEKRERGGEWLRANNYPTTNLNFTVHDLREG 1292
S ++ W + +T + E L + + + R
Sbjct: 14 DYTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCV 73
Query: 1293 GKYEFRVIAINEAGPGKPSKP--TDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPK 1350
+ V+ + +P +P T + Q +P P ++ +D L+W
Sbjct: 74 IPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQIS-TDQDHFLLTWSVAL 132
Query: 1351 HDGGAR-----IKGYIVQKRKKGGDWVDANSVPVPNPVHTVG--NLSEGEEYTFRVIAVN 1403
+ + V ++ W DA + T+G +L Y RV
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFAN 1463
G+ G+ S ++P + G + + + A+
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAA-VLSCSWEVRKEVASSVSFG 251
Query: 1464 DSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQY--RLQLKNPAGFDTATLHVRVLD-- 1519
D L S V++ S ++ ++ + +PA + V+
Sbjct: 252 LFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAE 311
Query: 1520 ---------RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKV 1570
+ PP + GDS +L W + + ++ + +T
Sbjct: 312 KHIKSSVNIQMAPPSLQVTKD--GDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSK 369
Query: 1571 SSYVTTPF-VRVRNLAIGSTYEFRV 1594
+ + + + L + Y RV
Sbjct: 370 TETLQNAHSMALPALEPSTRYWARV 394
Score = 90.1 bits (222), Expect = 1e-18
Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 37/309 (11%)
Query: 1044 PPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYE-------SATGFWSKLSSF 1095
P P D+ + L+W L S + ++E + + L S
Sbjct: 108 QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 167
Query: 1096 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
L + Y RVR G + P QPQ ++
Sbjct: 168 TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECF 227
Query: 1156 TNNATLM---WDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQ----------------Q 1196
+ A ++ W+ + S G + + +
Sbjct: 228 FDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHH 287
Query: 1197 CHADV----GQTPHGWWLQDSRIQGRIQSPFD-PPDAPSQPEVTGYSPSSVSLAWNPPAN 1251
C V + +Q R + I+S + PS VT S SL W
Sbjct: 288 CQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQ-VTKDG-DSYSLRWETMKM 345
Query: 1252 HGGRPITGYYVEKRERGGEWLRAN-NYPTTNLNFTVHDLREGGKYEFRVIAI--NEAGPG 1308
+ ++ R+ W + + + L +Y RV G
Sbjct: 346 RYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNG 405
Query: 1309 KPSKPTDIV 1317
S+ ++
Sbjct: 406 IWSEWSEAR 414
Score = 78.5 bits (192), Expect = 7e-15
Identities = 48/394 (12%), Positives = 90/394 (22%), Gaps = 47/394 (11%)
Query: 1057 ESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS-------FVRSPAYDVFGLETN 1109
+ W D N + +S + P
Sbjct: 17 SHITCRWADTQDAQRL--VNVTL-IRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCV 73
Query: 1110 RQYRFRVRAENQYGVSEPLE-LDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRT 1168
+ V + Y +P L +T V P + + D ++ L W
Sbjct: 74 IPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALG 133
Query: 1169 DGGSKIQ-----GYKVEFRST-----------RTATDCGLGYQ------------QCHAD 1200
S ++V ++ + LG + +
Sbjct: 134 SPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLA 193
Query: 1201 VGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGY 1260
G G + S P D + + +S +W G
Sbjct: 194 PGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFF-DGAAVLSCSWEVRKEVASSVSFGL 252
Query: 1261 YVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCK 1320
+ K + ++ ++ + A G+ +
Sbjct: 253 FY-KPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQP-RRA 310
Query: 1321 EQKRKPD---PPEAPKVD-RITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS 1376
E+ K P + DS +L W K + +Q RK W D+ +
Sbjct: 311 EKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKT 370
Query: 1377 VPVPNP-VHTVGNLSEGEEYTFRVIAVNEAGNSE 1409
+ N + L Y RV
Sbjct: 371 ETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
Score = 76.6 bits (187), Expect = 3e-14
Identities = 34/257 (13%), Positives = 67/257 (26%), Gaps = 21/257 (8%)
Query: 439 DNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFP-------DKPSPP 491
++ + + + L YV R+RT G+ P +P
Sbjct: 159 EDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDE 218
Query: 492 EGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV--SLFYDVP 549
P + + LS V A + + + + S
Sbjct: 219 AQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREG 278
Query: 550 RLIHRKEYLFRVKAVNSIGESDTLETTK-----TTVARNEFDEPDAPEKPTVKDWGEDFV 604
+ ++ + + + + + + + P KD D
Sbjct: 279 LGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKD--GDSY 336
Query: 605 DLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIA 664
L W+ + IQ ++ + + E N + +P L Y RV
Sbjct: 337 SLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRV 396
Query: 665 VNEAG-----PSEPSDA 676
SE S+A
Sbjct: 397 RTSRTGYNGIWSEWSEA 413
Score = 73.5 bits (179), Expect = 2e-13
Identities = 47/327 (14%), Positives = 87/327 (26%), Gaps = 32/327 (9%)
Query: 551 LIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKP 610
+I + ++ S L T + TV + +P P + + F+ L W
Sbjct: 73 VIPCQSFVVTDVDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRDLQISTDQDHFL-LTWSV 130
Query: 611 PLNDGGSP-----ITDYIIQKKEKGNPYWMNALEVPANKTDVKI--PDLTKGQEYEFRVI 663
L S ++ + K + W +A + +N + + L Y RV
Sbjct: 131 ALGSPQSHWLSPGDLEFEVVYKRLQDS-WEDAAILLSNTSQATLGPEHLMPSSTYVARVR 189
Query: 664 AVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT 723
G S P + +++ + + E EV
Sbjct: 190 TRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW--EVRKEVAS- 246
Query: 724 IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLK 783
SV + + V + + E + I
Sbjct: 247 ---------SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLH-TRHHCQIPVPDP- 295
Query: 784 NLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVD-RITKDSVTLSWRPPKHDGG 842
+ H + +KS P + DS +L W K
Sbjct: 296 -------ATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYE 348
Query: 843 ARIKGYIVQKRKKGGDWVDANSVPVPN 869
+ +Q RK W D+ + + N
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQN 375
Score = 61.2 bits (147), Expect = 2e-09
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 8/188 (4%)
Query: 85 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYN 144
SC+ E R + L Y + + R ++
Sbjct: 230 GAAVLSCSWEVRKEVASSVSFGLFYKPS--PDAGSAVLLREEECSPVLREGLGSLHTRHH 287
Query: 145 FRVKAVNKIGESLPLVCQSPITAKDPFGRPD--RPGQPTVT-DWGKDHVDLEWTPPKKDG 201
++ + +V P A+ + P++ D L W K
Sbjct: 288 CQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRY 347
Query: 202 GSPISQYIIEKKPKYGPWEKACIVPA-NITATSVPDLKEGEEYEFRVIA--VNKGGPGEP 258
+ I+ + W+ + N + ++P L+ Y RV G G
Sbjct: 348 EHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW 407
Query: 259 SKASAPVT 266
S+ S +
Sbjct: 408 SEWSEARS 415
Score = 60.0 bits (144), Expect = 5e-09
Identities = 31/262 (11%), Positives = 70/262 (26%), Gaps = 41/262 (15%)
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---------- 951
+ + + L + + L+ +TY RVR G
Sbjct: 147 FEVVYKRLQDSWEDAA-ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKW 205
Query: 952 ----------LSEPITTKEPVVAKN--------QYGKELDKWTNYDVLKEICQIHLPQIV 993
E + KE+ ++ + + ++
Sbjct: 206 SPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVL 265
Query: 994 DGKPVIAKSPFDPPDAP--------SQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPP 1045
+ + + + P+ + VS+ H + + +PP
Sbjct: 266 LREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPP 325
Query: 1046 QGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFW-SKLSSFVRSPAYDVF 1104
L V+ +S SL W+ + ++ + + SK + + + +
Sbjct: 326 S--LQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALP 382
Query: 1105 GLETNRQYRFRVRAENQYGVSE 1126
LE + +Y RVR
Sbjct: 383 ALEPSTRYWARVRVRTSRTGYN 404
Score = 58.9 bits (141), Expect = 1e-08
Identities = 52/403 (12%), Positives = 102/403 (25%), Gaps = 40/403 (9%)
Query: 85 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT------YTRAENLI 138
+ +C L V + +E D+ + +I
Sbjct: 15 YTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVI 74
Query: 139 EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 198
+ PL + +T +P P ++ +DH L W+
Sbjct: 75 PCQSFVVTDVDYFSFQPDRPLGTRLTVT-LTQHVQPPEPRDLQIST-DQDHFLLTWSVAL 132
Query: 199 KDGGSP-----ISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVN 251
S ++ + K WE A I+ +N + + L Y RV
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192
Query: 252 KGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDG 311
G + S P + +++ + + E EV ++
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW--EVRKEVASSVSF 250
Query: 312 KELKTDSVRTTVTSIG-YHTIVNTVNTKRSDSGT-YHLELRNTSGRDEGSFTVTVLETIS 369
S + + T +H ++ G + V+V
Sbjct: 251 GLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV--QPR 308
Query: 370 KTNTTTISSKNMMYLFERELLNLIVPDHLKNL-WNMKKSLHPVLHCRGNHLPIMEAVKSR 428
+ SS N+ L + +L W K + +
Sbjct: 309 RAEKHIKSSVNI--QMAPPSLQVTKDGDSYSLRWETMKMRYEHIDH-------------T 353
Query: 429 YIIEMAEYGLDNWKT--VPGFCPKEFFTVKGLTEGKKYVFRIR 469
+ I+ + WK + L +Y R+R
Sbjct: 354 FEIQYRKDT-ATWKDSKTETLQNAHSMALPALEPSTRYWARVR 395
Score = 56.2 bits (134), Expect = 9e-08
Identities = 34/274 (12%), Positives = 78/274 (28%), Gaps = 19/274 (6%)
Query: 412 LHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTE 471
L R N +E V +M + + VP C + F + +
Sbjct: 37 LIRRVNEDL-LEPVSCDLSDDMPWSACPHPRCVPRRC---VIPCQSFVVTDVDYFSFQPD 92
Query: 472 NMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAP-----ILHYIIE 526
G + +P P L++S ++ L+W V + + L + +
Sbjct: 93 RPLGTRLTVTLTQHVQPPEPRD-LQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVV 150
Query: 527 KMDISRGTWSDAGMTV---SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARN 583
+ A + L+ Y+ RV+ + G + +K +
Sbjct: 151 YKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVC 210
Query: 584 EFDEPDAPEKPTVKDW---GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEV 640
+P +P + G + +W+ S + + K + L
Sbjct: 211 WDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASS--VSFGLFYKPSPDAGSAVLLRE 268
Query: 641 PANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
++ + + ++ + A +
Sbjct: 269 EECSPVLREGLGSLHTRHHCQIPVPDPATHGQYI 302
Score = 55.4 bits (132), Expect = 1e-07
Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 16/261 (6%)
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAG 1534
H + + ++ +D + Q P G T+ + +P P +L
Sbjct: 64 HPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRL-TVTLTQHVQPPEPRDLQI-STDQ 121
Query: 1535 DSLTLYWTPPRDNGGSEITN-----YVVEKKDYNST--VWTKVSSYVTTPFVRVRNLAIG 1587
D L W+ + S + + V K + + S + + +L
Sbjct: 122 DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPS 181
Query: 1588 STYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLV--WSKPR 1645
STY RV G PG P+ ++ D +++ + R
Sbjct: 182 STYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVR 241
Query: 1646 HDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHY----DILEEIGTGAF 1701
+ S + + K + + S++ + + + G +
Sbjct: 242 KEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQY 301
Query: 1702 GVVHRCRERKTGNIFAAKFIP 1722
V + R R +I ++ I
Sbjct: 302 IVSVQPR-RAEKHIKSSVNIQ 321
Score = 49.6 bits (117), Expect = 1e-05
Identities = 41/375 (10%), Positives = 107/375 (28%), Gaps = 40/375 (10%)
Query: 1341 SVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEE------ 1394
+T W + R+ + +R + + +
Sbjct: 18 HITCRWADTQ--DAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIP 75
Query: 1395 YTFRVIAVNEAGNSEPGKQSG--PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
V+ + + +P + G + Q +P RD+ + +D + +A
Sbjct: 76 CQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEP----RDLQISTDQDHFLLTWSVA 131
Query: 1453 FPQPAAFWFANDSII-------DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK-- 1503
P + W + + L N++ + Y +++
Sbjct: 132 LGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTR 191
Query: 1504 ---------NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITN 1554
P+ + P+NL L+ W ++ S ++
Sbjct: 192 LAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASS-VSF 250
Query: 1555 YVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKA 1614
+ K ++ + +P +R ++ + + ++ + + +++ P +A
Sbjct: 251 GLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRA 310
Query: 1615 KHPF----DVPGAPGAPKG-VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
+ ++ AP P V DS SL W + + ++ R +
Sbjct: 311 EKHIKSSVNIQMAP--PSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDS 368
Query: 1670 ASMAHIPDTSLKYTS 1684
+ S+ +
Sbjct: 369 KTETLQNAHSMALPA 383
Score = 40.4 bits (93), Expect = 0.008
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 4/80 (5%)
Query: 72 HIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
+I P P S +L W + + ++ +
Sbjct: 319 NIQMAP--PSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNA 376
Query: 132 TRA--ENLIEGHDYNFRVKA 149
L Y RV+
Sbjct: 377 HSMALPALEPSTRYWARVRV 396
Score = 35.7 bits (81), Expect = 0.17
Identities = 46/442 (10%), Positives = 110/442 (24%), Gaps = 80/442 (18%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNY------------VVEKKDYNSTVWTKV 1570
P + L +T W +D N V + W+
Sbjct: 5 PLQTLRCYNDYTSHITCRWADTQDAQRL--VNVTLIRRVNEDLLEPVSCDLSDDMPWSAC 62
Query: 1571 SSYVTTP---FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAP 1627
P + ++ + F + G ++ P D+
Sbjct: 63 PHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ------ 116
Query: 1628 KGVDSTEDSISLVWSKPRHDGGSPIQ-----RYIVEKRLISDDKWIKASMAHIPDTSLKY 1682
+ + +D L WS S + V + D W A++ +
Sbjct: 117 --ISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKR-LQDSWEDAAILLSNTSQATL 173
Query: 1683 TSSVYDHYDILEEIGTGAFGVVHRCRER---KTGNIFAAKFIPVSHNLEKELIRKEIDIM 1739
+ R R G+ + + S + +
Sbjct: 174 GPEHLMP------------SSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD--------S 213
Query: 1740 NQLHHPKLINLHDAFEDDDEMVLIFEFLSGG------ELFERITAPDYKMSEAEVINYMR 1793
+ NL F+ + +E LF + +
Sbjct: 214 QPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSP 273
Query: 1794 QVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF 1853
+ E + +H ++ + V + + +V+ + + +++
Sbjct: 274 VLREGLGSLHTRHHCQIPVP--DPATHGQYIVSVQPRRAE--KHIKSSVNIQM------- 322
Query: 1854 AAPEIVEREPVGFYT-------DMWAVGVLAYVLDVAED-TNWRVAN-DYLVKDPTYIVH 1904
A P + + Y+ + + + +D W+ + + L + +
Sbjct: 323 APPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALP 382
Query: 1905 SLLQGHDYEFRVKAKNAAGFSK 1926
+L Y RV+ + +
Sbjct: 383 ALEPSTRYWARVRVRTSRTGYN 404
Score = 33.4 bits (75), Expect = 1.0
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 1884 EDTNWRVANDYLVKDPTYI--VHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPKFPLHS 1941
+W A L L+ Y RV+ + A G SK P+ S
Sbjct: 154 LQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDS 213
Query: 1942 WLTGDHRNRTNSINQKNLIKMR 1963
+ + + +
Sbjct: 214 QPGDEAQPQNLECFFDGAAVLS 235
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 96.3 bits (240), Expect = 6e-21
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
V Y L+ IG+GA G+V + A K + P + + +E+ +M ++
Sbjct: 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN 82
Query: 1744 HPKLINLHDAF------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
H +I L + F E+ ++ ++ E + L + I + + + Q+
Sbjct: 83 HKNIIGLLNVFTPQKSLEEFQDVYIVMELM-DANLCQVIQME---LDHERMSYLLYQMLC 138
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
+KH+H IIH D+KP NI+ S +K++DFGLA + ++ T + AP
Sbjct: 139 GIKHLHSAGIIHRDLKPSNIVV---KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 195
Query: 1857 EIVEREPVGFYTDMWAVG 1874
E++ D+W+VG
Sbjct: 196 EVILGMGYKENVDIWSVG 213
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET: ITI;
2.70A {Homo sapiens}
Length = 327
Score = 95.0 bits (237), Expect = 8e-21
Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 1669 KASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----- 1723
+A + + +T K ++ +G+GAFG V++ G IPV
Sbjct: 6 QALLRILKETEFK----------KIKVLGSGAFGTVYKGLWIPEGE---KVKIPVAIKEL 52
Query: 1724 ----SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAP 1779
S KE++ E +M + +P + L + LI + + G L + +
Sbjct: 53 REATSPKANKEILD-EAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREH 110
Query: 1780 DYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD 1839
+ ++N+ Q+ + + ++ ++ ++H D+ N++ +T VK+ DFGLA L
Sbjct: 111 KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQH--VKITDFGLAKLLG 168
Query: 1840 PNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
E + G + A E I+ R YT D+W+ GV
Sbjct: 169 AEEKEYHAEG-GKVPIKWMALESILHRI----YTHQSDVWSYGVT 208
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 94.8 bits (235), Expect = 8e-21
Identities = 42/315 (13%), Positives = 79/315 (25%), Gaps = 74/315 (23%)
Query: 2016 KPQSAFCYEGQSVKFTCRVIAI-ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRK 2074
+ + C + T+TW+ ++ + S + R
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK------- 63
Query: 2075 LQIDRFSIQD----------TSFDRRQAAPRFVIKPQSAFCY-----------EGQSVKF 2113
L ++D +S+ R ++ + CY
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 2114 TCRVIAIA------TPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIR 2167
C + P L W+ + + L ++G ++ + RG Y
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCH 180
Query: 2168 AENHYGYREEVVFLNVQ------RKYDLPVIHYKNHRRANKY-----------------D 2204
A Y ++ + ++ K PVI +
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI 240
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHV------------HTLKIAEIFPED-SGVYTCEAFND 2251
W N I + V L I+EI +TC A N
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 300
Query: 2252 EGESFSSCTLLVQVS 2266
G + L+ V+
Sbjct: 301 HGIDAAYIQLIYPVT 315
Score = 61.7 bits (149), Expect = 7e-10
Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 47/148 (31%)
Query: 2202 KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
K + W ++ + S + A H L EDSG Y C N +
Sbjct: 35 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Query: 2262 LV-------------------------------------------QVSWYKDGNPVSDDP 2278
++ WYKD P+ D
Sbjct: 95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN 154
Query: 2279 ATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ G ++ +++ G Y+
Sbjct: 155 IHF----SGVKDRLIVMNVAEKHRGNYT 178
Score = 53.6 bits (128), Expect = 3e-07
Identities = 20/157 (12%), Positives = 38/157 (24%), Gaps = 24/157 (15%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAF------ 1453
+ N + + E + + + D + P+M F
Sbjct: 80 VVRNSSYCL---RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN 136
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD---- 1509
P W+ + + + + L+V N G Y
Sbjct: 137 ELPKLQWYKDCKPLLLDNIHF----SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 1510 TATLHVRVLDRPHP-------PENLHADEFAGDSLTL 1539
T + L+ P P N + G + L
Sbjct: 193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Score = 50.1 bits (119), Expect = 5e-06
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
E +TW D + + + + + V K DSG Y+ +RN+S
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW-FVPAKVEDSGHYYCVVRNSSYCLRI 90
Query: 359 SFTVTVLET 367
+ +E
Sbjct: 91 KISAKFVEN 99
Score = 47.4 bits (112), Expect = 3e-05
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 13/113 (11%)
Query: 265 VTCKPRFVAPKIKTPLKDII-IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTV 323
+ + P I +P + + + G + + G+ W +G + D
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 324 T-----------SIGYHTIVNTVNTKRSD-SGTYHLELRNTSGRDEGSFTVTV 364
T++N + + +NT G D +
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 47.4 bits (112), Expect = 4e-05
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 16/133 (12%)
Query: 663 IAVNEAGPSEPSDASDI---IMCKQRFLAPKIKTPLKDII-IKAGKILNVEIQFIGEPPP 718
A + I + + + P I +P + + + G + + G+
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD 239
Query: 719 EVTWTIDGKELKTDSVRTTVT-----------SIGYHTIVNTVNTKRSD-SGTYHLELRN 766
W +G + D T++N + + +N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299
Query: 767 TSGRDEGSFTIVP 779
T G D ++
Sbjct: 300 THGIDAAYIQLIY 312
Score = 46.6 bits (110), Expect = 5e-05
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 1417 VIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRV-- 1474
+ E +P +PV+ + V G + A+W N S+ID+ D +
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 1475 ---------HKQLTMNSASLVVKNSQRSD-GGQYRLQLKNPAGFDTAT--LHVRV 1517
+K+ + L + + + KN G D A L V
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 44.7 bits (105), Expect = 2e-04
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
P++ W D K L D++ + + +N G Y T +
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVK-DRLIV---MNVAEKHRGNYTCHASYTYLGKQY 190
Query: 359 SFTVTVLETISKTNTTTI 376
T + + N T
Sbjct: 191 PITRVIEFITLEENKPTR 208
Score = 43.6 bits (102), Expect = 6e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
E +TW D + + + + + V K DSG Y+ +RN+S
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW-FVPAKVEDSGHYYCVVRNSSYCLRI 90
Query: 774 SFTI 777
+
Sbjct: 91 KISA 94
Score = 40.9 bits (95), Expect = 0.004
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 1435 DITVKAGEDFSIHVPFMAFPQPAAF-WFANDS---IIDDSDTRVHKQLTMNSASLVVKNS 1490
+ A E P W+ +DS + + +R+H+ + L +
Sbjct: 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ----HKEKLWFVPA 69
Query: 1491 QRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
+ D G Y ++N + + + ++
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 103
Score = 40.9 bits (95), Expect = 0.004
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
P++ W D K L D++ + + +N G Y T +
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVK-DRLIV---MNVAEKHRGNYTCHASYTYLGKQY 190
Query: 774 SFT 776
T
Sbjct: 191 PIT 193
Score = 37.0 bits (85), Expect = 0.059
Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 6/88 (6%)
Query: 2005 DRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-- 2061
+ + P V ++ G ++ C V + W N + + +
Sbjct: 203 ENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYY 262
Query: 2062 ---AGDDYTFYSSLRKLQIDRFSIQDTS 2086
+ + + L I +
Sbjct: 263 SVENPANKRRSTLITVLNISEIESRFYK 290
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight
junction formation, immunoglobulin superfamily, immune
system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB:
3eoy_G
Length = 209
Score = 91.9 bits (228), Expect = 8e-21
Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 37/208 (17%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD---- 2147
+ E VK +C ++P + W + + + V + +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 2148 ----DYTFVINRTKMEDRGEYIIRAENHYG--YREEVVFLNVQRKYDLPVIHYKN----- 2196
ED G Y G Y E V L V P N
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP---PSKPTVNIPSSA 119
Query: 2197 -----------HRRAN-KYDVIWLHNNKEIKPS-------NDFAYSSVAHVHTLKIAEIF 2237
+ + + W + + + ++ +Y L +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 2238 PEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
D+G Y+CEA N G +S + ++
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 90.0 bits (223), Expect = 5e-20
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 28/204 (13%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ E VK +C ++P + W + + + V + +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 2069 YSSLRK-LQIDRFSIQD-------------TSFDRR------QAAPRFVIKPQSAFCYEG 2108
+ L + + +D S+ P + G
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 2109 QSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF-------VINRTKMED 2160
TC TWF + + + K + ++ Y V + D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 2161 RGEYIIRAENHYGYREEVVFLNVQ 2184
GEY A N YG + ++
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRME 206
Score = 63.1 bits (153), Expect = 8e-11
Identities = 45/220 (20%), Positives = 60/220 (27%), Gaps = 42/220 (19%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
+ L C G P V W K D G K
Sbjct: 19 NNPVKLSCAY-------SGFS----SPRVE----------W---KFDQGDTTRLVCYNNK 54
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
++ +P IT SV G Y + +GG + + V
Sbjct: 55 ITASYEDRVTFLPTGITFKSVTREDTGT-YTC--MVSEEGGNSY-GEVKVKLI---VLVP 107
Query: 274 PKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
P T G + G PP E TW DG + T+ T S +
Sbjct: 108 PSKPTVNIPSSATIGN--RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 331 IVNTV------NTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ T SD+G Y E RN G S V +
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 58.4 bits (141), Expect = 3e-09
Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 50/152 (32%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVH--------TLKIAEIFPEDSGVYTCEAFNDEGESF 2256
V W + + + A + + ED+G YTC + G S+
Sbjct: 36 VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSY 95
Query: 2257 SSCTLLVQV------------------------------------SWYKDGNPVSDDPAT 2280
+ + V +W+KDG + +P +
Sbjct: 96 GEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS 155
Query: 2281 YQ------FTQIGQTYKMKILSTTLDDVGQYS 2306
+ + T ++ + D G+YS
Sbjct: 156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 187
Score = 58.0 bits (140), Expect = 3e-09
Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 20/186 (10%)
Query: 1343 TLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
+ W K D G + + + V T +++ + T+ +
Sbjct: 35 RVEW---KFDQGDTTRLVCYNNKITASY---EDRVTFLPTGITFKSVTREDTGTYTCMVS 88
Query: 1403 NEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWF 1461
E GNS G+ +IV P+KP ++ + G + P WF
Sbjct: 89 EEGGNSY-GEVKVKLIVLVPPSKPTVN----IPSSATIGNRAVLTCSEQDGSPPSEYTWF 143
Query: 1462 ANDSIIDDSDTRVHKQ------LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATL 1513
+ ++ + L + LV SD G+Y + +N G + +
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Query: 1514 HVRVLD 1519
+ ++
Sbjct: 204 RMEAVE 209
Score = 53.4 bits (128), Expect = 1e-07
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
P + G TC TWF + + + K + ++ Y
Sbjct: 105 LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
+ +L D S DT
Sbjct: 165 VLNPTTGELVFDPLSASDT 183
Score = 53.0 bits (127), Expect = 2e-07
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+T+ + + E G S +I+ + P T G
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV----LVPPSKPTVNIPSSATIGN--R 124
Query: 708 VEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV------NTKRSDSG 758
+ G PP E TW DG + T+ T S + + T SD+G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 759 TYHLELRNTSGRDEGSFTI 777
Y E RN G S +
Sbjct: 185 EYSCEARNGYGTPMTSNAV 203
Score = 51.9 bits (124), Expect = 4e-07
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 24/138 (17%)
Query: 1414 SGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII------ 1467
G V V ++ + + + F P W +
Sbjct: 2 MGSVTVHSSE----------PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY 51
Query: 1468 -DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--FDTATLHVRVLDRPH-- 1522
+ ++T + K+ R D G Y + G + + + VL P
Sbjct: 52 NNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP 111
Query: 1523 -PPENLHADEFAGDSLTL 1539
A G+ L
Sbjct: 112 TVNIPSSATI--GNRAVL 127
Score = 51.1 bits (122), Expect = 7e-07
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV---RTTVTSIGYH 329
+ + + ++ I + + + G P V W D + + T +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 330 TIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
T + T + R D+GTY + G G V +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
Score = 49.2 bits (117), Expect = 4e-06
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV---RTTVTSIGYH 744
+ + + ++ I + + + G P V W D + + T +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 745 TIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
T + T + R D+GTY + G G +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 96.0 bits (238), Expect = 9e-21
Identities = 52/330 (15%), Positives = 88/330 (26%), Gaps = 45/330 (13%)
Query: 1112 YRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDW-DTNNATLMWDRPR-TD 1169
Y F + S E +PP +IVD L W P D
Sbjct: 12 YTFLISTTFGCTSSSDTE-----------IKVNPPQDFEIVDPGYLGYLYLQWQPPLSLD 60
Query: 1170 GGSKIQ-GYKVEFR-----------------STRTATDCGLGYQQCHADVGQ--TPHGWW 1209
+ Y++++R + G+ Q
Sbjct: 61 HFKECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQ 120
Query: 1210 LQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG 1269
+ I P + Y+ + +W P E
Sbjct: 121 SSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPG-IGVLLDTNYNLFYWYEGLD 179
Query: 1270 EWLRANNYPTTNLN-----FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKR 1324
L+ +Y + F + + + V +E P + S +
Sbjct: 180 HALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSS---YFTFQLQNIV 236
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 1384
KP PP R + + L W P AR Y ++ R+ V + V N +
Sbjct: 237 KPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV---TATVENETY 293
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQS 1414
T+ +E + F V + S+ G S
Sbjct: 294 TLKTTNETRQLCFVVRSKVNIYCSDDGIWS 323
Score = 90.2 bits (223), Expect = 7e-19
Identities = 42/317 (13%), Positives = 92/317 (29%), Gaps = 30/317 (9%)
Query: 1297 FRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS-VTLSWRPPKHD--G 1353
F +A+ S + + K +PP+ ++ + L W+PP
Sbjct: 3 FVCLAVGCLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHF 62
Query: 1354 GARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG-NLSEGEEYTFRVIAVNEAGNSEPGK 1412
Y ++ R G ++ N + G +L++G E + + N
Sbjct: 63 KECTVEYELKYRNIG--SETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGS-EV 119
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITV------------KAGEDFSIHVPFMAFPQPAAFW 1460
QS + + + V+D+ K G + + F +W
Sbjct: 120 QSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLF-----YW 174
Query: 1461 FANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG---FDTATLHVRV 1517
+ + + + + T ++
Sbjct: 175 YEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQN 234
Query: 1518 LDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP 1577
+ +P PP L + + L W+ P + +Y +E ++ ++T+ T T
Sbjct: 235 IVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVENETY- 293
Query: 1578 FVRVRNLAIGSTYEFRV 1594
++ F V
Sbjct: 294 --TLKTTNETRQLCFVV 308
Score = 77.5 bits (190), Expect = 1e-14
Identities = 31/266 (11%), Positives = 67/266 (25%), Gaps = 24/266 (9%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKY----VFRIRTENMYGASEPLDPL 483
Y ++ G + WKT+ + L +G + + + N
Sbjct: 68 EYELKYRNIGSETWKTIITK-NLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAET 126
Query: 484 FPDKPSPPEGPLEVSNVT-----KESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW--- 535
V ++ + SW+ P + + +
Sbjct: 127 TYWISPQGIPETXVQDMDCVYYNWQYLLCSWK-PGIGVLLDTNYNLFYWYEGLDHALQCV 185
Query: 536 ---SDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPE 592
G + + K++ V + + ++ T +P P
Sbjct: 186 DYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENK---PIRSSYFTFQLQNIVKPLPPV 242
Query: 593 KPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDL 652
T + L W PL + DY I+ +E +
Sbjct: 243 YLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV----TATVENETYTLKTT 298
Query: 653 TKGQEYEFRVIAVNEAGPSEPSDASD 678
+ ++ F V + S+ S+
Sbjct: 299 NETRQLCFVVRSKVNIYCSDDGIWSE 324
Score = 64.4 bits (156), Expect = 2e-10
Identities = 43/298 (14%), Positives = 89/298 (29%), Gaps = 39/298 (13%)
Query: 587 EPDAPEKPTVKDWGE-DFVDLAWKPPLND--GGSPITDYIIQKKEKGNPYWMNALEVPAN 643
+ + P+ + D G ++ L W+PPL+ +Y ++ + G+ W + N
Sbjct: 31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKT--IITKN 88
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDI--IIK 701
DL KG E + + +S +T ++D+ +
Sbjct: 89 LHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYY 148
Query: 702 AGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT---VTSIGYHTIVNTVNTKRSDSG 758
+ L + + + + D + + G + + SD
Sbjct: 149 NWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYK 208
Query: 759 TYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPE 818
+++ + +S + + KP PP
Sbjct: 209 DFYICVNGSSENKPIRSSY--------------------------FTFQLQNIVKPLPPV 242
Query: 819 APKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLS 876
R + + L W P AR Y ++ R+ V + V N +TL +
Sbjct: 243 YLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV---TATVENETYTLKT 297
Score = 60.6 bits (146), Expect = 2e-09
Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 16/242 (6%)
Query: 463 KYVFRIRTENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESC-KLSWRVP--VDDGGAP 519
++ +G + D K +PP+ E+ + L W+ P +D
Sbjct: 9 GCLYTFLISTTFGCTSSSDT--EIKVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHFKEC 65
Query: 520 ILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVN---SIGESDTLETT 576
+ Y ++ +I TW + D L E + E +
Sbjct: 66 TVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAE 125
Query: 577 KTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMN 636
T + + + ++ +WKP + T+Y + +G + +
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIG--VLLDTNYNLFYWYEGLDHALQ 183
Query: 637 ALEVPANKTD-----VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKI 691
++ + + +++ V +E P S + + + L P
Sbjct: 184 CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243
Query: 692 KT 693
T
Sbjct: 244 LT 245
Score = 59.8 bits (144), Expect = 5e-09
Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 11/154 (7%)
Query: 1520 RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 1579
+++ + L W P TNY + + Y+
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQCVDYIKADGQ 193
Query: 1580 RVR------NLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDST 1633
+ + + V ++ + + ++ P +
Sbjct: 194 NIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPL---PPVYLTFTRES 250
Query: 1634 EDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
I L WS P + Y +E R
Sbjct: 251 SCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV 284
Score = 59.4 bits (143), Expect = 6e-09
Identities = 48/317 (15%), Positives = 87/317 (27%), Gaps = 48/317 (15%)
Query: 813 KPDPPEAPKVDRITKDS-VTLSWRPPKHD--GGARIKGYIVQKRKKGGDWVDANSVPVPN 869
K +PP+ ++ + L W+PP Y ++ R G ++ N
Sbjct: 31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG--SETWKTIITKN 88
Query: 870 PVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHA 929
+ L + + L + W +SP
Sbjct: 89 LHYKDGF------DLNKGIEAXIHTLLPWQCT-----NGSEVQSSWAETTYWISPQGIPE 137
Query: 930 TVPRLLEGTTYEFR-VRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDV---LKEIC 985
T + ++ Y ++ + G+ + T + + + +Y C
Sbjct: 138 TXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGC 197
Query: 986 QIHLPQIVDGKP----VIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDK 1041
+ + D K V S P S + K
Sbjct: 198 RFPYLEASDYKDFYICVNGSSENKPI-------------RSSYFTFQLQNI-------VK 237
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P PP L + + L W PL + +Y +E E T + V + Y
Sbjct: 238 PLPPVY-LTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTAT---VENETY 293
Query: 1102 DVFGLETNRQYRFRVRA 1118
+ RQ F VR+
Sbjct: 294 TLKTTNETRQLCFVVRS 310
Score = 56.0 bits (134), Expect = 9e-08
Identities = 22/225 (9%), Positives = 48/225 (21%), Gaps = 19/225 (8%)
Query: 69 QWLHIPSPPEGPLKPSNIT-----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 123
I ++ W+ + ++
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCV 185
Query: 124 MGDVSGTYTRA-----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 178
+ + D+ V ++ P+ +P P
Sbjct: 186 DYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENK---PIRSSYFTFQLQNIVKPLPPV 242
Query: 179 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 238
T T + L+W+ P + Y IE + ++
Sbjct: 243 YLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT---ATVENETYTLKTTN 299
Query: 239 EGEEYEFRVIAVNK---GGPGEPSKASAPVTCKPRFVAPKIKTPL 280
E + F V + G S+ S + ++ K
Sbjct: 300 ETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRF 344
Score = 55.6 bits (133), Expect = 1e-07
Identities = 22/215 (10%), Positives = 55/215 (25%), Gaps = 11/215 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
+PP+ L+W+ P D + Y ++ ++ + W + + Y
Sbjct: 32 VNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHY 91
Query: 132 TRAENLIEGHDYNFRVKAVN--KIGESLPLVCQSPITAKDPFG-RPDRPGQPTVTDWGKD 188
+L +G + G + P G +
Sbjct: 92 KDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQ 151
Query: 189 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK--ACIVPANITAT---SVPDLKEGEEY 243
++ W P + + + I + + +++
Sbjct: 152 YLLCSWKPG-IGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDF 210
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKT 278
V ++ P S + + + + P T
Sbjct: 211 YICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLT 245
Score = 51.3 bits (122), Expect = 2e-06
Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 13/151 (8%)
Query: 1044 PPQGPLDVSDITPESCSL--SWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P D+ + L SWKP + TNY + + + ++++
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIG--VLLDTNYNLFYWYEGLDHALQCVDYIKADGQ 193
Query: 1102 ------DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
+ + V ++ + P PP
Sbjct: 194 NIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVK---PLPPVYLTFTRES 250
Query: 1156 TNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ L W P ++ Y++E R T
Sbjct: 251 SCEIKLKWSIPLGPIPARCFDYEIEIREDDT 281
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 97.5 bits (243), Expect = 1e-20
Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 1650 SPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRE 1709
+ + + DKW + T + + ++G G +G V+
Sbjct: 198 PKRNKPTIYGVSPNYDKWE------MERTDIT----------MKHKLGGGQYGEVYEGVW 241
Query: 1710 RKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSG 1769
+K A K + +E + KE +M ++ HP L+ L + +I EF++
Sbjct: 242 KKYSLTVAVKTLKEDTMEVEEFL-KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY 300
Query: 1770 GEL--FERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNV 1827
G L + R ++S ++ Q+ A++++ +KN IH ++ N + + V
Sbjct: 301 GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHL--V 357
Query: 1828 KMIDFGLATKLDPNEVVKISTGT--AEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
K+ DFGL+ + + + ++ APE + +D+WA GVL +
Sbjct: 358 KVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW 410
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 88.8 bits (220), Expect = 1e-20
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 1222 PFDPPDAPS-QPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE---------- 1270
P+ PS + E+ S ++++ W I+ Y ++ G+
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSV 68
Query: 1271 --WLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
W+ N + +TVH L+ G +Y F V AIN+AG ++ Q K P
Sbjct: 69 DSWMIVPNIKQNH--YTVHGLQSGTRYIFIVKAINQAGSRNSEPTR--LKTNSQPFKSGP 124
Query: 1329 PEA 1331
Sbjct: 125 SSG 127
Score = 87.7 bits (217), Expect = 3e-20
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE--KYESATGF------- 1088
P+PP ++ + ++ ++ W I++Y ++ + F
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSV 68
Query: 1089 -WSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVP 1143
+ ++ Y V GL++ +Y F V+A NQ G T PF
Sbjct: 69 DSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLK-TNSQPFKSG 123
Score = 81.9 bits (202), Expect = 3e-18
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 1326 PDPPEA-PKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG------------DWV 1372
P+PP ++ + D++T+ W I Y +Q G W+
Sbjct: 16 PNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 1373 DANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
++ + +TV L G Y F V A+N+AG+ + + P
Sbjct: 73 IVPNIKQNH--YTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGP 124
Score = 81.1 bits (200), Expect = 6e-18
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 14/124 (11%)
Query: 163 SPITAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 221
S D P+ P + + D + + W IS Y ++ G
Sbjct: 5 SSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANF 61
Query: 222 AC--------IVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 271
++ NI V L+ G Y F V A+N+ G +P
Sbjct: 62 ISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121
Query: 272 VAPK 275
P
Sbjct: 122 SGPS 125
Score = 79.6 bits (196), Expect = 2e-17
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 476 ASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGT- 534
+ E LD L P+PP E+ + ++ + W D I Y ++ +
Sbjct: 6 SGEGLDYL--TAPNPPSIREELCTASHDTITVHWI---SDDEFSISSYELQYTIFTGQAN 60
Query: 535 ----------WSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNE 584
W Y V L Y+F VKA+N G ++ T T ++
Sbjct: 61 FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPF 120
Query: 585 FDEPDA 590
P +
Sbjct: 121 KSGPSS 126
Score = 77.3 bits (190), Expect = 1e-16
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 18/113 (15%)
Query: 67 ALQWLHIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM---------- 116
L +L P+PP + + + + W + I Y ++
Sbjct: 9 GLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLY 65
Query: 117 -ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 168
W+ + ++ + L G Y F VKA+N+ G P K
Sbjct: 66 NSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS----EPTRLK 114
Score = 75.7 bits (186), Expect = 5e-16
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 1509 DTATLHVRVLDRPHPPE-NLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST-- 1565
++ + L P+PP + D++T++W I++Y ++ +
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
Query: 1566 ---------VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH 1616
W V + + V L G+ Y F V A NQ G T ++
Sbjct: 61 FISLYNSVDSWMIVPNIKQNHYT-VHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ- 118
Query: 1617 PFDVPGAPG 1625
PF + G
Sbjct: 119 PFKSGPSSG 127
Score = 73.4 bits (180), Expect = 3e-15
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 13/123 (10%)
Query: 578 TTVARNEFDEPDAPE-KPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMN 636
+ + P+ P + + D + + W I+ Y +Q
Sbjct: 6 SGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFI 62
Query: 637 ALEVPAN---------KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFL 687
+L + + + L G Y F V A+N+AG +
Sbjct: 63 SLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKS 122
Query: 688 APK 690
P
Sbjct: 123 GPS 125
Score = 67.2 bits (164), Expect = 4e-13
Identities = 25/153 (16%), Positives = 41/153 (26%), Gaps = 51/153 (33%)
Query: 814 PDPPEA-PKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
P+PP ++ + D++T+ W I Y +Q G
Sbjct: 16 PNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQA------------- 59
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
L + V ++ +H TV
Sbjct: 60 --------------------------------NFISLYNSVDSWMIVPNIK--QNHYTVH 85
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
L GT Y F V+A N G T+ ++
Sbjct: 86 GLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118
Score = 52.6 bits (126), Expect = 5e-08
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 429 YIIEMAEY-----------GLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGAS 477
Y ++ + +D+W VP + +TV GL G +Y+F ++ N G+
Sbjct: 48 YELQYTIFTGQANFISLYNSVDSWMIVPN-IKQNHYTVHGLQSGTRYIFIVKAINQAGSR 106
Query: 478 EPLDPLFPDKPSPPE 492
P +
Sbjct: 107 NSEPTRLKTNSQPFK 121
Score = 49.9 bits (119), Expect = 5e-07
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPKFPLHS 1941
+W + + +K Y VH L G Y F VKA N AG T + P S
Sbjct: 66 NSVDSWMIVPN--IKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKS 122
Score = 43.7 bits (103), Expect = 7e-05
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1613 KAKHPFDVPGAP-GAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
+ P P + ++ D+I++ W I Y ++ + +
Sbjct: 8 EGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
Score = 42.2 bits (99), Expect = 2e-04
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 1139 PFTVPDPP-GQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDC 1190
T P+PP + ++ + T+ W +D I Y++++ +
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHW---ISDDEFSISSYELQYTIFTGQANF 61
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein
kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB:
3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 94.0 bits (234), Expect = 1e-20
Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 30/207 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINL- 1750
+LE +G G +G V R + G A K S + + E+ L H ++
Sbjct: 12 LLECVGKGRYGEVWRGSWQ--GENVAVKIFS-SRDEKSWFRETELYNTVMLRHENILGFI 68
Query: 1751 ---HDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK-- 1805
+ ++ LI + G L++ + + + + + + H+H +
Sbjct: 69 ASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCLRIVLSIASGLAHLHIEIF 126
Query: 1806 ------NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVV-----KISTGTAEFA 1854
I H D+K +NI+ + + + D GLA + GT +
Sbjct: 127 GTQGKPAIAHRDLKSKNIL--VKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYM 184
Query: 1855 APEIVEREPVGFYT------DMWAVGV 1875
APE+++ D+WA G+
Sbjct: 185 APEVLDETIQVDCFDSYKRVDIWAFGL 211
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 95.6 bits (238), Expect = 1e-20
Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 65/241 (26%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
Y + + +GTG+FG+V + ++G FA K + + +E+DIM L H +
Sbjct: 7 KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVL----QDPRYKNRELDIMKVLDHVNI 62
Query: 1748 INLHDAF--------------------------------------EDDDEMVLIFEFLSG 1769
I L D F + + +I E++
Sbjct: 63 IKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD 122
Query: 1770 --GELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNV 1827
++ + + + Y+ Q+ AV +H I H D+KP+N++ +
Sbjct: 123 TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVN-SKDNTL 181
Query: 1828 KMIDFGLATKLDPNEVVKISTGTAEFA-----APEIVEREPVGF--YT---DMWAVG-VL 1876
K+ DFG A KL P+E A APE++ +G YT D+W++G V
Sbjct: 182 KLCDFGSAKKLIPSE-----PSVAYICSRFYRAPELM----LGATEYTPSIDLWSIGCVF 232
Query: 1877 A 1877
Sbjct: 233 G 233
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 87.4 bits (217), Expect = 1e-20
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ AP F + EGQ C V P +TW N Q ++ +
Sbjct: 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAE 65
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I ED G Y AEN G ++ V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 76.2 bits (188), Expect = 1e-16
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ WL N + I+ + A V L I + PED G YTC A N G+ S + V
Sbjct: 43 ITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 63.5 bits (155), Expect = 4e-12
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS 318
S S+ + P F + LKD + G+ ++ G P P +TW ++G+ ++
Sbjct: 2 SSGSSGMEVAPSFS-----SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56
Query: 319 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
G + + D GTY N G+ S VTV
Sbjct: 57 STCEA---GVAELH-IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 63.1 bits (154), Expect = 5e-12
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ AP F + EGQ C V P +TW N Q ++ + T
Sbjct: 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA----------RST 58
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
+ + +L I +D
Sbjct: 59 CEAGVAELHIQDALPEDH 76
Score = 55.4 bits (134), Expect = 3e-09
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP + LKD + G+ ++ G P P +TW ++G+ ++ G +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA---GVAELH 67
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGS 774
+ D GTY N G+ S
Sbjct: 68 -IQDALPEDHGTYTCLAENALGQVSCS 93
Score = 47.7 bits (114), Expect = 2e-06
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+D V G+DF + P P W N I + + A L ++++
Sbjct: 19 KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAGVAELHIQDALPE 74
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRV 1517
D G Y +N G + + V V
Sbjct: 75 DHGTYTCLAENALGQVSCSAWVTV 98
Score = 37.3 bits (87), Expect = 0.007
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+++W +G P+ + T ++ I +D G Y+
Sbjct: 42 RITWLLNGQPIQYA----RSTCEAGVAELHIQDALPEDHGTYT 80
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 93.5 bits (232), Expect = 2e-20
Identities = 46/302 (15%), Positives = 85/302 (28%), Gaps = 60/302 (19%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ P G +V C ++ W S + G
Sbjct: 2 GSIPVIEPSVPELVVKPGATVTLRCV----GNGSVEWDGPP-----SPHWTLYSDGSSSI 52
Query: 2068 FYSSLRKLQIDRFSIQDT---------SFDRRQA---------APRFVIKPQSAFCYEGQ 2109
L + + Q+T A A + + Q +E Q
Sbjct: 53 -------LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQ 105
Query: 2110 SVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDD-YTFVINRTKMEDRGEYIIR 2167
C + + ++ + + Y+ + F I+R K +Y
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVR---GRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162
Query: 2168 AENHYG-YREEVVFLNVQRKYDLP--VIHYKNHRRANK----------------YDVIWL 2208
A + L VQ+ P + + +DV
Sbjct: 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQ 222
Query: 2209 HNNKEIK--PSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
HNN ++ +DF + V TL + ++ + +G Y+C A N +G+ +S V S
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Query: 2267 WY 2268
Sbjct: 283 AG 284
Score = 76.9 bits (189), Expect = 6e-15
Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 40/218 (18%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATPTLTWFH-NNQELKQSVKFMKRYAGD 2064
+ A + + Q +E Q C + + ++ + L + +
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY------- 138
Query: 2065 DYTFYSSLRKLQIDRFSIQD----------------------TSFDRRQAAPRFVIKPQS 2102
+S I R P + P
Sbjct: 139 ---SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAE 195
Query: 2103 AFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELK--QSVKFMKRYAGDDYTFVINRTKME 2159
G++ + C ++ + HNN +L Q F T +++ +
Sbjct: 196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ 255
Query: 2160 DRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNH 2197
G Y A N G +F V + +H
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFRVVES---AGNSHHHH 290
Score = 61.1 bits (148), Expect = 1e-09
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 17/164 (10%)
Query: 1371 WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVN---------EAGNSEPGKQSGP--VIV 1419
V P+ N S + F + A S + V
Sbjct: 124 LVRVRGRPLMRH----TNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179
Query: 1420 EEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDS--IIDDSDTRVHKQ 1477
++ P ++ GE I + + +++ + + H
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 1478 LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+L + G Y N G + ++ RV++
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 50.3 bits (120), Expect = 3e-06
Identities = 13/124 (10%), Positives = 28/124 (22%), Gaps = 9/124 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
A+ G V P + +++ G+ + +
Sbjct: 162 SALMGGRKVMSISIRLKVQKVIPGP-PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 308 TIDGKELKTDSVRTTVTSIGYH-----TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTV 362
++ + Y + +G Y N G+ S
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV---DFQHAGNYSCVASNVQGKHSTSMFF 277
Query: 363 TVLE 366
V+E
Sbjct: 278 RVVE 281
Score = 44.6 bits (105), Expect = 2e-04
Identities = 11/153 (7%), Positives = 36/153 (23%), Gaps = 20/153 (13%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFP 1454
T+R + + + V++ +++ V +D + +
Sbjct: 65 TYRCTEPGDPLGGS---AAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 1455 QPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG-FDTATL 1513
+ T + ++ Y+ + ++
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYS---FSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175
Query: 1514 HVRVLDRPH-------PPENLHADEFAGDSLTL 1539
++V P L G++ +
Sbjct: 176 RLKVQKVIPGPPALTLVPAELVRIR--GEAAQI 206
Score = 44.2 bits (104), Expect = 3e-04
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
S PVI P ++ VK G ++ N S+ D
Sbjct: 2 GSIPVIEPSVP-----------ELVVKPGATVTLRC------------VGNGSVEWDGPP 38
Query: 1473 RVHKQLTM--NSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP----PEN 1526
H L +S+ L N+ + G YR +A +H+ V D P +
Sbjct: 39 SPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE 98
Query: 1527 LHADEFAGDSLTL 1539
+ E L
Sbjct: 99 VVVFE--DQDALL 109
Score = 41.9 bits (98), Expect = 0.002
Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 9/134 (6%)
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNV 708
I Q +++ A+ S + + + K P + +++ G+ +
Sbjct: 148 IHRAKFIQSQDYQCSALMGGRKVM-SISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQI 206
Query: 709 EIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH-----TIVNTVNTKRSDSGTYHLE 763
+ ++ + Y + +G Y
Sbjct: 207 VCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL---DQVDFQHAGNYSCV 263
Query: 764 LRNTSGRDEGSFTI 777
N G+ S
Sbjct: 264 ASNVQGKHSTSMFF 277
Score = 41.1 bits (96), Expect = 0.003
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
P I+ + ++++K G + + G V W S T+ S G +I
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP------PSPHWTLYSDGSSSI 52
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++T N ++GTY + + V +
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD 87
Score = 40.7 bits (95), Expect = 0.004
Identities = 8/81 (9%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
P + P G++ + C ++ + +N + +
Sbjct: 181 KVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNR 240
Query: 2065 DYTFYSSLRKLQIDRFSIQDT 2085
+ L +D+ Q
Sbjct: 241 YQKVLT----LNLDQVDFQHA 257
Score = 40.3 bits (94), Expect = 0.006
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 17/148 (11%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
P I+ + ++++K G + + G V W S T+ S G +I++
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP------PSPHWTLYSDGSSSILS 54
Query: 749 TVNTKRSDSGTYHLELRNTSGRDEGSFTI---VPDHLKNLWNTKKSLHP----VLHCRGN 801
T N ++GTY + + P N+ + + +L C
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLT 114
Query: 802 HLPIMEAVKSRKPDPPEAPKVDRITKDS 829
+ V + + +
Sbjct: 115 DPVLEAGVSLVRVRGRPLMRHTNYSFSP 142
Score = 39.2 bits (91), Expect = 0.013
Identities = 14/142 (9%), Positives = 31/142 (21%), Gaps = 14/142 (9%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ---FIGE 300
+R G + V R +++++ + + +
Sbjct: 65 TYRCTEPGDPLGGS-AAIHLYVKDPARP----WNVLAQEVVVFEDQ--DALLPCLLTDPV 117
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG-RDEGS 359
V+ + + TI K S Y S
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPWHGFTI---HRAKFIQSQDYQCSALMGGRKVMSIS 174
Query: 360 FTVTVLETISKTNTTTISSKNM 381
+ V + I T+ +
Sbjct: 175 IRLKVQKVIPGPPALTLVPAEL 196
Score = 35.3 bits (81), Expect = 0.17
Identities = 6/73 (8%), Positives = 17/73 (23%), Gaps = 8/73 (10%)
Query: 691 IKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+++++ + + + V+ + + TI
Sbjct: 92 WNVLAQEVVVFEDQ--DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTI- 148
Query: 748 NTVNTKRSDSGTY 760
K S Y
Sbjct: 149 --HRAKFIQSQDY 159
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP
binding, phosphoryla transferase; HET: ATP; 1.75A {Homo
sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 92.7 bits (231), Expect = 2e-20
Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 31/206 (15%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIMNQLH 1743
E +G G F + + R+ G+ V N + +M++L
Sbjct: 12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE-AASMMSKLS 70
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
H L+ + DE +L+ EF+ G L + ++ + +Q+ A+ +
Sbjct: 71 HKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE 130
Query: 1804 EKNIIHLDVKPENIM------CQTRNSTNVKMIDFGLATKLDPNEVVKIS---TGTAEFA 1854
E +IH +V +NI+ +T N +K+ D G++ + P ++++
Sbjct: 131 ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWV------ 184
Query: 1855 APE-IVEREPVGFYT---DMWAVGVL 1876
PE I D W+ G
Sbjct: 185 PPECIENP---KNLNLATDKWSFGTT 207
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 92.8 bits (231), Expect = 3e-20
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 1691 DILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINL 1750
+ E IG G FG V R + R G A K S EI L H ++
Sbjct: 6 VLQESIGKGRFGEVWRGKWR--GEEVAVKIFS-SREERSWFREAEIYQTVMLRHENILGF 62
Query: 1751 HDAFEDDD----EMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK- 1805
A D+ ++ L+ ++ G LF+ + Y ++ +I + H+H +
Sbjct: 63 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHMEI 120
Query: 1806 -------NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNE-----VVKISTGTAEF 1853
I H D+K +NI+ + + + D GLA + D GT +
Sbjct: 121 VGTQGKPAIAHRDLKSKNIL--VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRY 178
Query: 1854 AAPEIVEREPVGFYT------DMWAVGV 1875
APE+++ + D++A+G+
Sbjct: 179 MAPEVLDDSINMKHFESFKRADIYAMGL 206
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 93.7 bits (233), Expect = 3e-20
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 30/207 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 1751
+ E IG G FG V R + R G A K S EI L H ++
Sbjct: 46 LQESIGKGRFGEVWRGKWR--GEEVAVKIFS-SREERSWFREAEIYQTVMLRHENILGFI 102
Query: 1752 DAFEDDD----EMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK-- 1805
A D+ ++ L+ ++ G LF+ + Y ++ +I + H+H +
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHMEIV 160
Query: 1806 ------NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNE-----VVKISTGTAEFA 1854
I H D+K +NI+ + + + D GLA + D GT +
Sbjct: 161 GTQGKPAIAHRDLKSKNIL--VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 218
Query: 1855 APEIVEREPVGFY------TDMWAVGV 1875
APE+++ + D++A+G+
Sbjct: 219 APEVLDDSINMKHFESFKRADIYAMGL 245
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A
{Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 88.4 bits (219), Expect = 4e-20
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVI 2118
++ +G T + K++ + +++ + ++ P F EG + +F C+V
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66
Query: 2119 AIATPTLTWFHNNQELKQSVKFMKRYAGDD-YTFVINRTKMEDRGEYIIRAENHYGYREE 2177
P + WF ++ +K+S F Y + + I+ +D +Y +A N G
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 2178 VVFLNVQ 2184
L V+
Sbjct: 127 TAELLVE 133
Score = 75.3 bits (185), Expect = 1e-15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2204 DVIWLHNNKEIKPSNDFAYS-SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+V+W ++ +K S F +L I+E+ +D YTC+A N GE+ + LL
Sbjct: 72 EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Query: 2263 VQV 2265
V+
Sbjct: 132 VET 134
Score = 63.3 bits (154), Expect = 2e-11
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 1998 SIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF 2057
+++ + ++ P F EG + +F C+V P + WF ++ +K+S F
Sbjct: 29 FLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF 88
Query: 2058 MKRYAGDDYTFYSSLRKLQIDRFSIQDT 2085
Y + L I D
Sbjct: 89 QIDYDEEG------NCSLTISEVCGDDD 110
Score = 59.9 bits (145), Expect = 3e-10
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 2/120 (1%)
Query: 249 AVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT 308
+N V + V P + D+ + G + + G P PEV W
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF 76
Query: 309 IDGKELKTDS-VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
D +K + G ++ D Y + N+ G + + V
Sbjct: 77 KDDNPVKESRHFQIDYDEEGNCSLT-ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 57.6 bits (139), Expect = 2e-09
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 15/115 (13%)
Query: 664 AVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT 723
+N + + ++ + P + D+ + G + + G P PEV W
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF 76
Query: 724 IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
D +K + I + G L + G D+ +T
Sbjct: 77 KDDNPVKES---------RHFQID------YDEEGNCSLTISEVCGDDDAKYTCK 116
Score = 56.0 bits (135), Expect = 6e-09
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 5/145 (3%)
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGE 1442
+ + I N+ N + + EE+P+ + D+ V G
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENED---AFLEEVAEEKPHVKPYFTKTILDMEVVEGS 57
Query: 1443 DFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQL 1502
+P P WF +D+ + +S + SL + D +Y +
Sbjct: 58 AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117
Query: 1503 KNPAGFD--TATLHVRVLDRPHPPE 1525
N G TA L V + + E
Sbjct: 118 VNSLGEATCTAELLVETMGKEGEGE 142
Score = 39.1 bits (91), Expect = 0.004
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQ-TYKMKILSTTLDDVGQYS 2306
+V W+KD NPV + +Q + + I DD +Y+
Sbjct: 72 EVMWFKDDNPVKESRH-FQIDYDEEGNCSLTISEVCGDDDAKYT 114
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich
fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1
b.1.1.4
Length = 212
Score = 90.0 bits (223), Expect = 4e-20
Identities = 30/207 (14%), Positives = 51/207 (24%), Gaps = 38/207 (18%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF--------MKRYA 2145
E +S+K TC ++P + W V + R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYG--YREEVVFLNVQRKYDLPVIHYKNHR----- 2198
+ +D GEY G Y E + L V P +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP---PSKPTISVPSSVTI 118
Query: 2199 --------RANKYD----VIWLHNNKEIKPSNDFAYSSVAHVH--------TLKIAEIFP 2238
+ W + + ++ + + L +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 2239 EDSGVYTCEAFNDEGESFSSCTLLVQV 2265
DSG Y C+A N G + S +
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDA 205
Score = 80.8 bits (199), Expect = 7e-17
Identities = 25/203 (12%), Positives = 49/203 (24%), Gaps = 29/203 (14%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
E +S+K TC ++P + W V + + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 2071 -SLRKLQIDRFSIQDT-------------SFDRR------QAAPRFVIKPQSAFCYEGQS 2110
S + + +D ++ P + G
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 2111 VKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYA--------GDDYTFVINRTKMEDR 2161
TC +WF + + + R + + D
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 2162 GEYIIRAENHYGYREEVVFLNVQ 2184
GEY +A+N YG ++
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204
Score = 58.8 bits (142), Expect = 2e-09
Identities = 39/221 (17%), Positives = 64/221 (28%), Gaps = 43/221 (19%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
ES+ L C T G P V W K GS + +
Sbjct: 16 NESIKLTC----TYS---GFS----SPRVE----------W---KFVQGSTTALVCYNSQ 51
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 273
++ + IT + + E+ + +GG + S +T V
Sbjct: 52 ITAPYADRVTFSSSGIT---FSSVTRKDNGEYTCMVSEEGGQNY-GEVSIHLT---VLVP 104
Query: 274 PKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
P T + G + G PP E +W DG + T + T +
Sbjct: 105 PSKPTISVPSSVTIGN--RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 331 IVNTV-------NTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
++ DSG Y+ + +N G S +
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 53.4 bits (128), Expect = 2e-07
Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 21/187 (11%)
Query: 1343 TLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
+ W K G+ + A+ V + T +++ + + +
Sbjct: 32 RVEW---KFVQGSTTALVCYNSQITAPY---ADRVTFSSSGITFSSVTRKDNGEYTCMVS 85
Query: 1403 NEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWF 1461
E G + G+ S + V P+KP + +V G + P WF
Sbjct: 86 EEGGQNY-GEVSIHLTVLVPPSKPTI----SVPSSVTIGNRAVLTCSEHDGSPPSEYSWF 140
Query: 1462 ANDSIIDDSD-------TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TAT 1512
+ + +D + S L+ D G+Y Q +N G +
Sbjct: 141 KDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA 200
Query: 1513 LHVRVLD 1519
H+ ++
Sbjct: 201 AHMDAVE 207
Score = 49.2 bits (117), Expect = 4e-06
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSI--GYHT 330
+ T D+ + + + + + G P V W + G + +T+ T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 331 IVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
++ + R D+G Y + G++ G ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
Score = 49.2 bits (117), Expect = 4e-06
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 25/136 (18%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFW-------FANDSIID 1468
+ Q D+ V E + + F P W A
Sbjct: 2 GSVYTAQS-----------DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNS 50
Query: 1469 DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG--FDTATLHVRVLDRPH---P 1523
++T +S+ + + R D G+Y + G + ++H+ VL P
Sbjct: 51 QITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI 110
Query: 1524 PENLHADEFAGDSLTL 1539
G+ L
Sbjct: 111 SVPSSVTI--GNRAVL 124
Score = 48.8 bits (116), Expect = 5e-06
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILN 707
+T+ E+ + E G + ++ + + P T + G
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGG----QNYGEVSIHLTVLVPPSKPTISVPSSVTIGN--R 121
Query: 708 VEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV-------NTKRSDS 757
+ G PP E +W DG + T + T + ++ DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 758 GTYHLELRNTSGRDEGS 774
G Y+ + +N G S
Sbjct: 182 GEYYCQAQNGYGTAMRS 198
Score = 47.3 bits (112), Expect = 2e-05
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSI--GYHT 745
+ T D+ + + + + + G P V W + G + +T+ T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 746 IVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
++ + R D+G Y + G++ G +I
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97
Score = 44.6 bits (105), Expect = 1e-04
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELK-QSVKFMKRYAGDD 2065
P + G TC +WF + + K + +
Sbjct: 102 LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 2066 YTFYSSLRKLQIDRFSIQDT 2085
+T L D + D+
Sbjct: 162 FTIDPKSGDLIFDPVTAFDS 181
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 85.8 bits (213), Expect = 5e-20
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAGDDYT 2150
PRF+ P++ EG+ + +V + P ++W+ N + ++ M ++
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
+ + D G Y A+N G V L+V K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 72.7 bits (179), Expect = 2e-15
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2204 DVIWLHNNKEIKPSNDF-AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
DV W N + ++ + S +H+L + D+G Y C A N GE+ + L
Sbjct: 36 DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Query: 2263 VQV 2265
V
Sbjct: 96 VLA 98
Score = 61.6 bits (150), Expect = 2e-11
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
PRF+ P++ EG+ + +V + P ++W+ N + ++ +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L + D
Sbjct: 64 ------LIFEVVRASDA 74
Score = 61.2 bits (149), Expect = 3e-11
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHT 330
P+ +++ I G+ ++ + G P P+V+W ++G+ +++D + V+ G H+
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++ + SD+G Y +N +G + + VL
Sbjct: 64 LI-FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 54.6 bits (132), Expect = 5e-09
Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 746
P+ +++ I G+ ++ + G P P+V+W ++G+ +++D + V+ G H++
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + SD+G Y +N +G + +
Sbjct: 65 I-FEVVRASDAGAYACVAKNRAGEATFTVQL 94
Score = 48.9 bits (117), Expect = 5e-07
Identities = 20/87 (22%), Positives = 33/87 (37%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
++++ G + P P W+ N + D SL+ + + S
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS 72
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDR 1520
D G Y KN AG T T+ + VL +
Sbjct: 73 DAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSLN 2319
VSWY +G V D + + D G Y+ G L+
Sbjct: 36 DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Query: 2320 VV 2321
V+
Sbjct: 96 VL 97
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 93.6 bits (233), Expect = 6e-20
Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 43/222 (19%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
V Y++++++G GA+G+V + +R+TG + A K I ++ + + +EI I+ +L
Sbjct: 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS 66
Query: 1744 -HPKLINLHDAF--EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
H ++NL + ++D ++ L+F+++ +L I A + + Q+ + +K
Sbjct: 67 GHENIVNLLNVLRADNDRDVYLVFDYM-ETDLHAVIRANI--LEPVHKQYVVYQLIKVIK 123
Query: 1801 HMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPNEVVKISTGTAEFA----- 1854
++H ++H D+KP NI+ N+ +VK+ DFGL+ V + +
Sbjct: 124 YLHSGGLLHRDMKPSNILL---NAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENF 180
Query: 1855 -----------------APEIVEREPVGF--YT---DMWAVG 1874
APEI+ +G YT DMW++G
Sbjct: 181 DDDQPILTDYVATRWYRAPEIL----LGSTKYTKGIDMWSLG 218
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 85.8 bits (213), Expect = 6e-20
Identities = 18/94 (19%), Positives = 30/94 (31%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ P V Q KF + PT W + + + Q K+ +
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I++T D G Y +N G L ++
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 78.9 bits (195), Expect = 2e-17
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
IW + K I + S L+I + DSG+YTC N G SSC L +
Sbjct: 37 TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Query: 2264 Q 2264
+
Sbjct: 97 K 97
Score = 65.0 bits (159), Expect = 1e-12
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 263 APVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTT 322
P++ KP V T L+D + + + ++ GEP P WT DGK +
Sbjct: 1 GPISSKPVIV-----TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL 55
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
G + T SDSG Y ++N++G S +T+
Sbjct: 56 SEDKGGFFLE-IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 62.7 bits (153), Expect = 8e-12
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ P V Q KF + PT W + + + Q K+ +
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L+I + D+
Sbjct: 64 -------LEIHKTDTSDS 74
Score = 59.2 bits (144), Expect = 1e-10
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P I T L+D + + + ++ GEP P WT DGK + G + +
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG---------GKYKLS 56
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
D G + LE+ T D G +T
Sbjct: 57 E-------DKGGFFLEIHKTDTSDSGLYTCT 80
Score = 48.4 bits (116), Expect = 8e-07
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+D TV + V P+P A W + I + L + + S
Sbjct: 14 QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTDTS 72
Query: 1494 DGGQYRLQLKNPAGFDT--ATLHVRVL 1518
D G Y +KN AG + L ++ +
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 41.5 bits (98), Expect = 2e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
W KDG ++ Y+ ++ + ++I T D G Y+
Sbjct: 37 TAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTDTSDSGLYT 78
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative
splicing, ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O*
2wwm_C 2wwk_O
Length = 107
Score = 85.9 bits (213), Expect = 7e-20
Identities = 20/93 (21%), Positives = 34/93 (36%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ P F+ P+ G + C V+ P + W Q+L S + G ++
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
++ D G Y+ RA N G + V
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 77.0 bits (190), Expect = 1e-16
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V+W +++ S ++ + H L + P D+GVY C A N GE++++ + V
Sbjct: 45 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Query: 2265 V 2265
Sbjct: 105 E 105
Score = 63.9 bits (156), Expect = 4e-12
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 258 PSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTD 317
P KAS+ + P + + + +G ++ +GEPPP V W G++L
Sbjct: 2 PMKASSG----DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS 57
Query: 318 SVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
R + + G + +D+G Y RN +G + VTVLE
Sbjct: 58 E-RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 60.5 bits (147), Expect = 5e-11
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ P F+ P+ G + C V+ P + W Q+L S + G ++
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG- 70
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L + D
Sbjct: 71 ------LLLTAALPTDA 81
Score = 57.4 bits (139), Expect = 7e-10
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 669 GPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKE 728
GP + S + P + + + +G ++ +GEPPP V W G++
Sbjct: 1 GPMKASS-------GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQ 53
Query: 729 LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
L R + + G + +D+G Y RN +G + +
Sbjct: 54 LAASE-RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 51.2 bits (123), Expect = 9e-08
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 1415 GPVIVE--EQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
GP+ +Q + P L R + V +G + + + P P W + S+
Sbjct: 1 GPMKASSGDQGSPPCF-LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE- 58
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
R+ L++ + +D G Y + +N AG A V VL+ P
Sbjct: 59 RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSLN 2319
V W K G ++ F G + + + + D G Y + G AA ++
Sbjct: 44 VVVWEKGGQQLAASE-RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Query: 2320 V 2320
V
Sbjct: 103 V 103
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor
chain, ifnar1, fibronect III, type I interferon receptor
chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 91.9 bits (227), Expect = 7e-20
Identities = 39/301 (12%), Positives = 78/301 (25%), Gaps = 45/301 (14%)
Query: 1145 PPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTR-------------TATDCG 1191
P + ++ D N L W+R G+ + +++ T T+T C
Sbjct: 6 SPQKVEVDIIDDNF-ILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 1192 L------GYQQCHADV---GQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSV 1242
Y++ + + W+ D P + + ++
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVD-----SFTPFRKAQIGPPEVHLEA-EDKAI 116
Query: 1243 SLAWNPPANHG-----GRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEF 1297
+ +P Y + + ++ L Y
Sbjct: 117 VIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE--RIENIYSRHKIYKLSPETTYCL 174
Query: 1298 RVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARI 1357
+V A K + + K PP + + L W + ++
Sbjct: 175 KVKAALLTSW-KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV 233
Query: 1358 KGYIV-QKRKKGGDWVDANSVPVPNPVHT-----VGNLSEGEEYTFRVIAVNEAGNSEPG 1411
+ KR G +P V T N+ + Y RV A + S
Sbjct: 234 QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
Query: 1412 K 1412
+
Sbjct: 294 E 294
Score = 89.6 bits (221), Expect = 4e-19
Identities = 45/277 (16%), Positives = 84/277 (30%), Gaps = 23/277 (8%)
Query: 429 YIIEMAEYGLDNWKTVPG-------FCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLD 481
+ + + G+DNW + G C F+ L ++ RIR E +S
Sbjct: 35 FSFDYQKTGMDNWIKLSGCQNITSTKCN---FSSLKLNVYEEIKLRIRAEKENTSSWYEV 91
Query: 482 PLFPDKPSPPEGPLEVS-NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISR----GTWS 536
F GP EV ++ + D L + +
Sbjct: 92 DSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVE 151
Query: 537 DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTV 596
+ + + + +L Y +VKA + + + +E PE V
Sbjct: 152 ERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEV 211
Query: 597 KDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK------IP 650
+++V L W + + K + ++P + +VK
Sbjct: 212 SVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIP-DCENVKTTQCVFPQ 269
Query: 651 DLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFL 687
++ + Y RV A + S S+ Q FL
Sbjct: 270 NVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFL 306
Score = 74.6 bits (182), Expect = 5e-14
Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 37/302 (12%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDA---NSVPVPNPV 1383
P+ +VD I D+ L W G + +K G +W+ ++
Sbjct: 6 SPQKVEVD-IIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGED 1443
+ L+ EE R+ A E +S S + Q P + L ED
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA---------ED 113
Query: 1444 FSIHVPFMAFPQPAAFWFANDSIID------DSDTRVHKQLTMNSASLVVKNSQRSDGGQ 1497
+I + + + W + + + V +++ + +
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP--ETT 171
Query: 1498 Y--RLQLKNPAG-----FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGS 1550
Y +++ + ++ PP + L W N
Sbjct: 172 YCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTF 231
Query: 1551 EI---TNYVVEKKDYNSTVWTKVSS---YVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 1604
++ ++ + W ++ TT V +N+ Y RV A + S
Sbjct: 232 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 291
Query: 1605 PA 1606
+
Sbjct: 292 WS 293
Score = 72.3 bits (176), Expect = 3e-13
Identities = 45/306 (14%), Positives = 87/306 (28%), Gaps = 43/306 (14%)
Query: 1041 KPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
P P V DI ++ L W + G+ + + ++ W KLS
Sbjct: 2 DPLKS--PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNIT 57
Query: 1100 A----YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
+ + L + + R+RAE + S E+D+ F PP ++ +
Sbjct: 58 STKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTP--FRKAQIGPPEVH--LEAE 112
Query: 1156 TNNATLMWDRPRTDGGS-----KIQGYKVEFR-STRTATDCGLGYQQCHADVGQTPHGW- 1208
+ D Y + ++ + H +P
Sbjct: 113 DKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTY 172
Query: 1209 -------------WLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGR 1255
S + + + P EV+ + + V L W+ +
Sbjct: 173 CLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTF 231
Query: 1256 PI---TGYYVEKR-ERGGEWLRAN---NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPG 1308
+ + +W + N TT F ++ + G Y RV A +
Sbjct: 232 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFP-QNVFQKGIYLLRVQASDGNNTS 290
Query: 1309 KPSKPT 1314
S+
Sbjct: 291 FWSEEI 296
Score = 67.3 bits (163), Expect = 1e-11
Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 27/210 (12%)
Query: 82 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--- 134
P + + L W + G + + + W+ + +
Sbjct: 6 SPQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 63
Query: 135 --ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK-DHVD 191
L + R++A + S S + P P V + +
Sbjct: 64 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHLEAEDKAIV 117
Query: 192 LEWTPPKKDGGS-----PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR 246
+ +P KD Y + E+ + + + L Y +
Sbjct: 118 IHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE--RIENIYSRHKIYKLSPETTYCLK 175
Query: 247 VIAVNKGGP--GEPSKASAPVTCKPRFVAP 274
V A G S T + P
Sbjct: 176 VKAALLTSWKIGVYSPVHCIKTTVENELPP 205
Score = 66.9 bits (162), Expect = 2e-11
Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 16/204 (7%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD-----ILHYVVEKMDMETGRWVPMGDVS 128
PPE L+ + + + D Y + +G + ++
Sbjct: 102 IGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIY 158
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 188
+ + L Y +VKA + + P V+ ++
Sbjct: 159 SRH-KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN 217
Query: 189 HVDLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATS---VPDLKEGEE 242
+V L+W + + ++ + K N+ T ++ +
Sbjct: 218 YV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGI 276
Query: 243 YEFRVIAVNKGGPGEPSKASAPVT 266
Y RV A + S+ T
Sbjct: 277 YLLRVQASDGNNTSFWSEEIKFDT 300
Score = 55.7 bits (133), Expect = 6e-08
Identities = 54/387 (13%), Positives = 103/387 (26%), Gaps = 101/387 (26%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---VPA 642
D +P+K V ++F+ L W G+ + ++ G W+ + +
Sbjct: 2 DPLKSPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITS 58
Query: 643 NKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKA 702
K + L +E + R+ A E S F + +
Sbjct: 59 TKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWY-------EVDSFTPFRKAQIGPPEVHLE 110
Query: 703 GKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSG---- 758
+ + I V W +DG T S+ S G + + ++
Sbjct: 111 AEDKAIVIHISPGTKDSVMWALDGLSF-TYSLVIWKNSSGVEERIENIYSRHKIYKLSPE 169
Query: 759 -TYHLELR--NTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPD 815
TY L+++ + G ++ +H + N LP
Sbjct: 170 TTYCLKVKAALLTSWKIGVYS--------------PVHCIKTTVENELP----------- 204
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLL 875
PPE +V + + L W + + VQ
Sbjct: 205 PPENIEVS-VQNQNYVLKWDYTYANM-----TFQVQ------------------------ 234
Query: 876 SIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR-L 934
+L FL + H W + + P+ +
Sbjct: 235 ---WLHAFLKRNPGN--------------------HLYKWKQIPDCENVKTTQCVFPQNV 271
Query: 935 LEGTTYEFRVRAENLQGLSEPITTKEP 961
+ Y RV+A + S +
Sbjct: 272 FQKGIYLLRVQASDGNNTSFWSEEIKF 298
Score = 54.9 bits (131), Expect = 1e-07
Identities = 39/308 (12%), Positives = 80/308 (25%), Gaps = 30/308 (9%)
Query: 188 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 243
D+ L W + G+ + + + NIT+T S L EE
Sbjct: 17 DNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEI 74
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ R+ A + F + + + + I
Sbjct: 75 KLRIRAEKENTS--------SWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKD 126
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
V W +DG V +S + + S Y L E ++ +
Sbjct: 127 SVMWALDGLSFTYSLVIWKNSS----GVEERIENIYSRHKIYKLSP-------ETTYCLK 175
Query: 364 VLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIME 423
V + + + S E + ++ N L +
Sbjct: 176 VKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV-- 233
Query: 424 AVKSRYIIEMAEYGLDNWKTVPG---FCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
++ L WK +P + + + + Y+ R++ + S
Sbjct: 234 QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
Query: 481 DPLFPDKP 488
+ + D
Sbjct: 294 EEIKFDTE 301
Score = 47.6 bits (112), Expect = 3e-05
Identities = 46/335 (13%), Positives = 88/335 (26%), Gaps = 67/335 (20%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT-L 874
P+ +VD I D+ L W G + +K G D N + + +
Sbjct: 6 SPQKVEVD-IIDDNFILRWNRSDESVGNVT--FSFDYQKTGMD----NWIKLSGCQNITS 58
Query: 875 LSIGYLSQFLAEEKKHGKLLLAKVENG---YVIEKRDLTHGGGWVPAVNHVSPYDHHATV 931
+ S L ++ + A+ EN Y ++ P H+ D +
Sbjct: 59 TKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 118
Query: 932 ----------PRLLEGTTYEFRVR-AENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDV 980
L+G ++ + + +N G+ E I +L T Y +
Sbjct: 119 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYS----RHKIYKLSPETTYCL 174
Query: 981 LKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITD 1040
V A S V N P
Sbjct: 175 K----------------VKAALLTSWKIGV---------YSPVHCIKTTVENELPPPENI 209
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI---TNYVVEKYESATGFWSKLSS--F 1095
+ + ++ L W + + ++ + W ++
Sbjct: 210 E----------VSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCEN 259
Query: 1096 VRSPAYDVF-GLETNRQYRFRVRAENQYGVSEPLE 1129
V++ + Y RV+A + S E
Sbjct: 260 VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 294
Score = 33.4 bits (75), Expect = 0.76
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSK 1932
++ Q Y RV+A + S S K
Sbjct: 265 CVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIK 297
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 86.0 bits (213), Expect = 7e-20
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNL 1282
P A S VT SPSS+SLAW P G + Y V+ E+G E T+
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKP 1313
+ L+ G Y +V A +EAG G +
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 79.1 bits (195), Expect = 2e-17
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 1384
P +V R + S++L+W P+ G + Y V+ K +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ L G Y +V A +EAG G + Q
Sbjct: 67 ELRGLKRGASYLVQVRARSEAG---YGPFGQEHHSQTQL 102
Score = 75.2 bits (185), Expect = 4e-16
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P A V + LAW P G + DY ++ EKG + + ++
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
++ L +G Y +V A +EAG
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHS 98
Score = 65.2 bits (159), Expect = 1e-12
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 232
P VT + L W P+ G + Y ++ K + +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ LK G Y +V A ++ G G + T
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT 100
Score = 62.5 bits (152), Expect = 1e-11
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRS 1098
P + V+ +P S SL+W P G + +Y V+ +E S +
Sbjct: 6 SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
++ GL+ Y +VRA ++ G
Sbjct: 64 NRAELRGLKRGASYLVQVRARSEAGYGPF 92
Score = 58.6 bits (142), Expect = 3e-10
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTT-PFV 1579
P ++ + SL+L W PR G + +Y V+ + + + V T+
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+R L G++Y +V A ++ G ++ D + G
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFG---QEHHSQTQLDSGPSSG 109
Score = 57.1 bits (138), Expect = 1e-09
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--KMDMETGRWVPMGDVSGTY 131
P ++ + + SS +L W PR G +L Y V+ + E V S
Sbjct: 8 PPAVSD-IRVTRSSPSSLSLAWAVPRAPSGA-VLDYEVKYHEKGAEGPSSVRFLKTSENR 65
Query: 132 TRAENLIEGHDYNFRVKAVNKIGES 156
L G Y +V+A ++ G
Sbjct: 66 AELRGLKRGASYLVQVRARSEAGYG 90
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIE--KMDISRGTWSDAGMTVS 543
P + V+ + S L+W VP G +L Y ++ + + T
Sbjct: 6 SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGES 570
++ L YL +V+A + G
Sbjct: 64 NRAELRGLKRGASYLVQVRARSEAGYG 90
Score = 48.2 bits (115), Expect = 1e-06
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 872
P +V R + S++L+W P+ G + Y V+ K +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 873 TL 874
L
Sbjct: 67 EL 68
Score = 45.5 bits (108), Expect = 1e-05
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
P A + S+ S+SL W+ PR G + Y V+ + +
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 1679 SLK 1681
+
Sbjct: 65 RAE 67
Score = 40.1 bits (94), Expect = 8e-04
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPIT 957
Y ++ + G +V + ++ A + L G +Y +VRA + G +
Sbjct: 40 DYEVKYHE--KGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHH 97
Query: 958 TK 959
++
Sbjct: 98 SQ 99
Score = 39.0 bits (91), Expect = 0.002
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ P ++ ++ +L W PR G + Y+V++
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEK 48
Score = 39.0 bits (91), Expect = 0.002
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
V + ++ R + + L +G Y +V+A++ AG+
Sbjct: 43 VKYHEKGAEGPSSVRFLK---TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 35.1 bits (81), Expect = 0.043
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEP 479
Y ++ E G + +V E ++GL G Y+ ++R + G
Sbjct: 40 DYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPF 92
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 119
Score = 86.3 bits (214), Expect = 7e-20
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNY 1277
+++ D P + +S+ ++W P G +TGY + E +
Sbjct: 11 VRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYL 69
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
P L + V L Y V A+ G G+ S T P P +
Sbjct: 70 PNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST-----ISSGVPPSGPSS 118
Score = 78.6 bits (194), Expect = 3e-17
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-K 1364
G S P +V+ E P P I S+ +SW+ P G + GY + +
Sbjct: 1 GSSGSSGPQ-LVRTHEDV--PGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWE 56
Query: 1365 RKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ + +P + V L+ YT V A+ G G+ S I P
Sbjct: 57 EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSASTISSGVP 112
Score = 78.2 bits (193), Expect = 4e-17
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
D P + + + + ++W+ P G +T Y I +E +P
Sbjct: 16 DVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTL 74
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ ++ LT Y V A+ G + S ++
Sbjct: 75 EYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 67.8 bits (166), Expect = 2e-13
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 221
P + P G + ++ + + W P + G ++ Y I +
Sbjct: 7 GPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRV 65
Query: 222 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 262
+P V L Y V A+ G G+ S ++
Sbjct: 66 THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 63.6 bits (155), Expect = 7e-12
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 10/110 (9%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
D P P L S+I S +SW+ P + G +T Y + +E ++++ ++ +
Sbjct: 16 DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI-SWEEYNRTNTRVTHYLPNV 72
Query: 1100 A--YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
Y V GL Y V A G + S + P P
Sbjct: 73 TLEYRVTGLTALTTYTIEVAAMTSKGQGQV-----SASTISSGVPPSGPS 117
Score = 61.7 bits (150), Expect = 3e-11
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
D P P +L E SL + W P + G +T Y + ++YN T
Sbjct: 16 DVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTL 74
Query: 1579 -VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGA 1626
RV L +TY V A G + + + P P +
Sbjct: 75 EYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGV-----PPSGPSS 118
Score = 55.1 bits (133), Expect = 6e-09
Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 475 GASEPLDPLF----PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDI 530
G+S P D P P L S + S K+SW+ P + G + Y I +
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEY 58
Query: 531 SRGTWS--DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEP 588
+R V+L Y V L Y V A+ S G+ +T ++ P
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGV-----PP 113
Query: 589 DAPE 592
P
Sbjct: 114 SGPS 117
Score = 54.4 bits (131), Expect = 1e-08
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV--EKMDMETGRWVPMGDVSGT 130
+P P L S I +S + W+ P + G + Y + E+ + R
Sbjct: 17 VPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTL 74
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 174
R L Y V A+ G+ S I++ P P
Sbjct: 75 EYRVTGLTALTTYTIEVAAMTSKGQGQVS--ASTISSGVPPSGP 116
Score = 50.9 bits (122), Expect = 2e-07
Identities = 22/152 (14%), Positives = 33/152 (21%), Gaps = 60/152 (39%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P P I S+ +SW+ P
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGE---------------------------------- 43
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
K+G L GY I + +++ V
Sbjct: 44 ---------------KNGILT------GYRISWE--EYNRTNTRVTHYLPNVTLEYRVTG 80
Query: 934 LLEGTTYEFRVRAENLQG---LSEPITTKEPV 962
L TTY V A +G +S +
Sbjct: 81 LTALTTYTIEVAAMTSKGQGQVSASTISSGVP 112
Score = 44.0 bits (104), Expect = 4e-05
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
P + DVPG G + + S+ + W +P G + Y + +
Sbjct: 7 GPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNT-- 63
Query: 1670 ASMAHIPDTSLKYT 1683
++P+ +L+Y
Sbjct: 64 RVTHYLPNVTLEYR 77
Score = 37.0 bits (86), Expect = 0.012
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
Y I EY N + + V GLT Y + G +
Sbjct: 51 YRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
Query: 488 PSPPEGP 494
PP GP
Sbjct: 111 V-PPSGP 116
Score = 36.3 bits (84), Expect = 0.025
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
TN RV + Y V L Y V A + G + S+++
Sbjct: 58 YNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 35.9 bits (83), Expect = 0.030
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 1132 NSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
+ VP P G + + + W P G + GY++ +
Sbjct: 7 GPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWE 56
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A*
1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A*
3mj2_A*
Length = 267
Score = 90.3 bits (225), Expect = 1e-19
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 1751
++EIG+G FG+VH + A K I E++ I E ++M +L HPKL+ L+
Sbjct: 12 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQLY 69
Query: 1752 DAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLD 1811
+ + L+ EF+ G L + + + ++ VCE + ++ E +IH D
Sbjct: 70 GVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRD 129
Query: 1812 VKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPEIVEREPVGFY 1867
+ N + +K+ DFG+ + ++ S+ +F A+PE+ Y
Sbjct: 130 LAARNCLVGENQV--IKVSDFGMTRFVLDDQYT--SSTGTKFPVKWASPEVFSF---SRY 182
Query: 1868 T---DMWAVGVLAY 1878
+ D+W+ GVL +
Sbjct: 183 SSKSDVWSFGVLMW 196
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase;
HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Length = 367
Score = 92.4 bits (230), Expect = 1e-19
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 32/206 (15%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLH 1743
V Y L+ +G+GA+G V + +TG A K + P L + +E+ ++ +
Sbjct: 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMR 82
Query: 1744 HPKLINLHDAF------EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCE 1797
H +I L D F +D + L+ F+ G +L + + K+ E + + Q+ +
Sbjct: 83 HENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLK 139
Query: 1798 AVKHMHEKNIIHLDVKPENIMCQTRNST-NVKMIDFGLATKLDPN---EVVKISTGTAEF 1853
++++H IIH D+KP N+ N +K++DFGLA + D VV T +
Sbjct: 140 GLRYIHAAGIIHRDLKPGNLAV---NEDCELKILDFGLARQADSEMTGYVV-----TRWY 191
Query: 1854 AAPEIVEREPVGF--YT---DMWAVG 1874
APE++ + + YT D+W+VG
Sbjct: 192 RAPEVI----LNWMRYTQTVDIWSVG 213
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32,
immunoglobulin superfamily, low responder polymorphism,
cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A
3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Length = 170
Score = 87.6 bits (217), Expect = 1e-19
Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 37/190 (19%)
Query: 2092 AAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDD 2148
A P+ V+K P + SV TC+ ++ WFHN + +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------- 51
Query: 2149 YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN-----------H 2197
+ D GEY + + V L V ++ + + H
Sbjct: 52 -PSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCH 108
Query: 2198 RRANK--YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGES 2255
+K V + N K K S+ T I + SG Y C
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHL--------DPTFSIPQANHSHSGDYHCTGNIGYTLF 160
Query: 2256 FS-SCTLLVQ 2264
S T+ VQ
Sbjct: 161 SSKPVTITVQ 170
Score = 76.8 bits (189), Expect = 6e-16
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 26/186 (13%)
Query: 2009 AAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGD- 2064
A P+ V+K P + SV TC+ ++ WFHN + + R+ +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANN 60
Query: 2065 ----DYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAI 2120
+YT Q + S+ D + P F EG+++ C
Sbjct: 61 NDSGEYTC-------QTGQTSLSDPVHLTVLFEWLVLQTPHLEF-QEGETIMLRCHSWKD 112
Query: 2121 ATP-TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG-YREEV 2178
+T+F N + K S D TF I + G+Y Y + +
Sbjct: 113 KPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKP 164
Query: 2179 VFLNVQ 2184
V + VQ
Sbjct: 165 VTITVQ 170
Score = 38.6 bits (90), Expect = 0.007
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE- 357
+P +VT+ +GK K + T + I S SG YH
Sbjct: 112 DKPLVKVTFFQNGKSQKFSHLDPTFS-IP--------QANHSHSGDYHCTGNIGYTLFSS 162
Query: 358 GSFTVTV 364
T+TV
Sbjct: 163 KPVTITV 169
Score = 36.7 bits (85), Expect = 0.030
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQLTMN 1481
P K V+ L I V + ++ P+ + WF N + +
Sbjct: 2 PPKAVLKLEP-PWINVLQEDSVTLTCQGARSPESDSIQWFHNG-----------NLIPTH 49
Query: 1482 SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+ + +D G+Y Q + D L V +L E G+++ L
Sbjct: 50 TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQE--GETIML 105
Score = 36.3 bits (84), Expect = 0.040
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 360
+ W +G + T + + +DSG Y + TS D
Sbjct: 33 ESDSIQWFHNGNLIPTHTQPSYRFKA-----------NNNDSGEYTCQTGQTSLSDPVHL 81
Query: 361 TVTVLETISKTNTTTISSKNMMYL 384
TV + +T + L
Sbjct: 82 TVLFEWLVLQTPHLEFQEGETIML 105
Score = 35.9 bits (83), Expect = 0.066
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 770
+P +VT+ +GK K + T + I S SG YH
Sbjct: 112 DKPLVKVTFFQNGKSQKFSHLDPTFS-IP--------QANHSHSGDYHCTGNIGYTL 159
Score = 34.0 bits (78), Expect = 0.23
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 21/89 (23%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
+ EDS TC+ + + W+ +GN +
Sbjct: 14 INVLQEDSVTLTCQG--------ARSPESDSIQWFHNGNLIPTHTQPSY----------- 54
Query: 2294 ILSTTLDDVGQYS--AQMGGIIAAFSLNV 2320
+D G+Y+ + L V
Sbjct: 55 RFKANNNDSGEYTCQTGQTSLSDPVHLTV 83
Score = 34.0 bits (78), Expect = 0.30
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVK 2056
+ P F EG+++ C +T+F N + K S
Sbjct: 84 LFEWLVLQTPHLEF-QEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL 132
Score = 33.3 bits (76), Expect = 0.42
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 19/117 (16%)
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFA 1462
+ G + S PV + V+ + + GE + +F
Sbjct: 69 QTGQTS---LSDPVHLTVLFEWLVLQTP---HLEFQEGETIMLRCHSWKDKPLVKVTFFQ 122
Query: 1463 NDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVR 1516
N S + + + S G Y T+ V+
Sbjct: 123 NGKSQKFSHL---------DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 31.7 bits (72), Expect = 1.6
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 11/57 (19%)
Query: 716 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
+ W +G + T + + +DSG Y + TS D
Sbjct: 33 ESDSIQWFHNGNLIPTHTQPSYRFKA-----------NNNDSGEYTCQTGQTSLSDP 78
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 90.9 bits (226), Expect = 1e-19
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
V HY + IG G+FGV+ A KF + +R E L
Sbjct: 8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKF--EPRRSDAPQLRDEYRTYKLLAGC 65
Query: 1746 KLI-NLHDAFEDDDEMVLIFEFL--SGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
I N++ ++ VL+ + L S +L + K S V +Q+ V+ +
Sbjct: 66 TGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDL---CGRKFSVKTVAMAAKQMLARVQSI 122
Query: 1803 HEKNIIHLDVKPENIMC---QTRNSTNVKMIDFGLATK-LDPNEVVKIS-------TGTA 1851
HEK++++ D+KP+N + ++N+ + ++DFG+ DP I +GTA
Sbjct: 123 HEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA 182
Query: 1852 EFA 1854
+
Sbjct: 183 RYM 185
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 85.1 bits (211), Expect = 1e-19
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAGDDYT 2150
P F+ P EG+ + C+V + TP L+W + + ++ M ++
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLP 2190
+I D G Y A N G + L V K P
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 71.6 bits (176), Expect = 8e-15
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2204 DVIWLHNNKEIKPSNDF-AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
D+ W + K ++P + VH+L I + D+G+YTC A N G++ S L+
Sbjct: 40 DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Query: 2263 VQVS 2266
V
Sbjct: 100 VAAK 103
Score = 64.7 bits (158), Expect = 2e-12
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHT 330
P D+ ++ GK+ ++ + G P P+++W +DGK ++ DS + V G H+
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++ D+G Y N +G++ S + V
Sbjct: 68 LI-IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 59.3 bits (144), Expect = 1e-10
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
P F+ P EG+ + C+V + TP L+W + + ++ +
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L I+ + +D
Sbjct: 68 ------LIIEPVTSRDA 78
Score = 58.1 bits (141), Expect = 4e-10
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 746
P D+ ++ GK+ ++ + G P P+++W +DGK ++ DS + V G H++
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ D+G Y N +G++ S +V
Sbjct: 69 I-IEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 55.5 bits (134), Expect = 4e-09
Identities = 18/93 (19%), Positives = 33/93 (35%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
D+TV+ G+ + P P W + + SL+++
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
D G Y N AG ++ +L + V + P +
Sbjct: 77 DAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--AQ--MGGIIAAFSLN 2319
+SW DG PV D A + + + I T D G Y+ A G + L
Sbjct: 40 DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Query: 2320 V 2320
V
Sbjct: 100 V 100
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 88.4 bits (219), Expect = 1e-19
Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 29/196 (14%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQSVKFMKRYAGDDYTF 2151
P + EG+ + C L+ W N + ++ + + +
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 2152 VINRTKMEDRGEYIIRAENHYGYRE-EVVFLNVQRKYDLPVIHYKNH---RRANKY---- 2203
I + D+G Y + + F+ + + Y + + Y
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 2204 ---------------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
D+ W + + + + + S LKI I ED G+Y CEA
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEGIYECEA 184
Query: 2249 FNDEGESFSSCTLLVQ 2264
N G+ + VQ
Sbjct: 185 ENIRGKDKHQARIYVQ 200
Score = 86.1 bits (213), Expect = 9e-19
Identities = 28/203 (13%), Positives = 54/203 (26%), Gaps = 40/203 (19%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQSVKFMKRYAGDDYTF 2068
P + EG+ + C L+ W N + ++ + + +
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN- 67
Query: 2069 YSSLRKLQIDRFSIQD---------------------------TSFDRRQAAPRFVIKPQ 2101
L I D + V++ +
Sbjct: 68 ------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 2102 SAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDR 2161
+ GQ+V C + P + W + + + + I ++ED
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST----SGAVLKIFNIQLEDE 177
Query: 2162 GEYIIRAENHYGYREEVVFLNVQ 2184
G Y AEN G + + VQ
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQ 200
Score = 59.9 bits (145), Expect = 7e-10
Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 52/163 (31%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV- 2263
WL N + + D L IA + D G Y+C + +
Sbjct: 42 YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
Query: 2264 ------------------------------------------QVSWYKDGNPVSDDPATY 2281
+ W K P+ P+T
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM---PSTA 158
Query: 2282 QFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLNV 2320
+ + G +KI + L+D G Y G + V
Sbjct: 159 EISTSGAV--LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 59.5 bits (144), Expect = 1e-09
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFV----APKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
+ P+ P I KD+ G+ + +E +G P P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGS 359
++ W + + + + + V N + D G Y E N G+D+
Sbjct: 144 DIRWRKVLEPMPSTA---------EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
Query: 360 FTVTV 364
+ V
Sbjct: 195 ARIYV 199
Score = 52.2 bits (125), Expect = 4e-07
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNK---PVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+ + + P+I + P + +D+ G++ ++ + P P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143
Query: 1457 AAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVR 1516
W + + +++ + A L + N Q D G Y + +N G D +
Sbjct: 144 DIRWRKVLEPMPSTA-----EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Query: 1517 V 1517
V
Sbjct: 199 V 199
Score = 50.3 bits (120), Expect = 1e-06
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 17/123 (13%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFL----APKIKTPLKDIIIKAGKILNVEIQFIGEPPP 718
+ + ++ I KD+ G+ + +E +G P P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143
Query: 719 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGS 774
++ W + + + + + V N + D G Y E N G+D+
Sbjct: 144 DIRWRKVLEPMPSTA---------EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
Query: 775 FTI 777
I
Sbjct: 195 ARI 197
Score = 49.1 bits (117), Expect = 4e-06
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 1999 IQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
I + V++ + + GQ+V C + P + W + + + +
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS 161
Query: 2059 KRYAGDDYTFYSSLRKLQIDRFSIQD 2084
+S L+I ++D
Sbjct: 162 -----------TSGAVLKIFNIQLED 176
Score = 41.8 bits (98), Expect = 0.001
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKEL--KTDSVRTTVTSI 326
++ P ++ +K GK + + P +++ W ++ + D R +
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 327 GYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNT 373
G I N + SD G Y + + S L I + T
Sbjct: 66 GNLYIANV---EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109
Score = 41.4 bits (97), Expect = 0.001
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 1435 DITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
++ VK G+ + P FP ++ + + + ++ + +L + N + S
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHA 1529
D G Y + +P+ + L
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY 112
Score = 39.1 bits (91), Expect = 0.008
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKEL--KTDSVRTTVTSI 741
+L P ++ +K GK + + P +++ W ++ + D R +
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 742 GYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
G I N + SD G Y + + S
Sbjct: 66 GNLYIANV---EASDKGNYSCFVSSPSITKS 93
Score = 31.4 bits (71), Expect = 2.5
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 2263 VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ W + PV +F + I + D G YS
Sbjct: 40 LSYRWLLNEFPVFITMDKRRFVSQT-NGNLYIANVEASDKGNYS 82
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 88.0 bits (218), Expect = 2e-19
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 29/188 (15%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELK--QSVKFMKRYAGDDYT 2067
FV P + G + C++ P + W + Q L+ S + D+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 2068 FYSSLRKLQIDRFSIQDT------------SFDRR------QAAPRFVIKPQSAFCYEGQ 2109
+ + +L+I + DT +F + + P F+ +P+
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 2110 SVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
+C+ P L W + L + G ++ + + A
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATA-------PGHGPQRSLHVPGLNKTSSFSCEA 175
Query: 2169 ENHYGYRE 2176
N G
Sbjct: 176 HNAKGVTT 183
Score = 83.0 bits (205), Expect = 8e-18
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 38/200 (19%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGDDY--- 2149
FV P + G + C++ P + W + Q L+ + + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 2150 ------TFVINRTKMEDRGEYIIRAENHYGYRE-EVVFLNVQRKYDLPVIHYK-NHRRAN 2201
I ++ D G+Y + + ++ ++ LP + R
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVA 119
Query: 2202 K----------------YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYT 2245
D++WL + + + HV L + ++
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFS 172
Query: 2246 CEAFNDEGESFSSCTLLVQV 2265
CEA N +G + S + +
Sbjct: 173 CEAHNAKGVTTSRTATITVL 192
Score = 50.7 bits (121), Expect = 8e-07
Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 52/147 (35%)
Query: 2204 DVIWLHNNKEIKPSNDFAYS---------SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
+V WL + + ++ ++ V L+I + D+G Y C F
Sbjct: 34 EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT 93
Query: 2255 SFSSCTLL-----------------------------------VQVSWYKDGNPVSDDPA 2279
S + V + W +D P++ P
Sbjct: 94 FVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP- 152
Query: 2280 TYQFTQIGQTYKMKILSTTLDDVGQYS 2306
G + + L+ +S
Sbjct: 153 -------GHGPQRSLHVPGLNKTSSFS 172
Score = 48.7 bits (116), Expect = 4e-06
Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 48/218 (22%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G + L CQ + G P P V W +D G + +
Sbjct: 17 GLTGTLRCQLQVQ-----GEP-----PEVH-WLRD-------------GQILELADSTQT 52
Query: 214 PKYGPWEKACIVPAN----ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
++ IT+ + D G+ Y+ + +
Sbjct: 53 QVPLGEDEQDDWIVVSQLRITSLQLSD--TGQ-YQ--CLVFLGHQTFVSQPGYVGL---- 103
Query: 270 RFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGY 328
P +D + A N+ Q G P P ++ W D L T S+
Sbjct: 104 -EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSL-- 160
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVL 365
+ + ++ E N G + T+TVL
Sbjct: 161 ------HVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 45.3 bits (107), Expect = 6e-05
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 269 PRFVAPKIKTPLKDIIIKAGKILNVE-IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 327
F + P +I G + + PPEV W DG+ L+ T +G
Sbjct: 3 SPF----VGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57
Query: 328 YHTIVNTV--------NTKRSDSGTYHLELRNTSGRDEG-SFTVTVLE 366
+ + + + SD+G Y + V +
Sbjct: 58 EDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 44.5 bits (105), Expect = 1e-04
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQS 2054
+ P F+ +P+ +C+ P L W + L +
Sbjct: 104 EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA 151
Score = 43.0 bits (101), Expect = 4e-04
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 1434 RDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRV--------HKQLTMNSAS 1484
+IT G ++ + P W + I++ +D+ + + +
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAG-FDTATLHVRVLDRPH---PPENLHADEFAGDSLTL 1539
L + + Q SD GQY+ + F + +V + P+ PE+ L
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA--NTPFNL 126
Score = 42.6 bits (100), Expect = 5e-04
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 689 PKIKTPLKDIIIKAGKILNVE-IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+I G + + PPEV W DG+ L+ T +G
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 748 NTV--------NTKRSDSGTYHLELRNTSGRDE 772
+ + + + SD+G Y +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV 95
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 17/121 (14%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 721
+ + P +D + A N+ Q G P P ++
Sbjct: 86 LVFLGHQTFVSQPGYVGL-----EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLL 140
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF---TIV 778
W D L T S+ + + ++ E N G T++
Sbjct: 141 WLQDAVPLATAPGHGPQRSL--------HVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Query: 779 P 779
P
Sbjct: 193 P 193
Score = 38.7 bits (90), Expect = 0.010
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 26/131 (19%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQP---NKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
+ Q G V +E P +P D TV A F++ P+P
Sbjct: 86 LVFLGHQTFV--SQPGYVGLEGLPYFLEEP-------EDRTVAANTPFNLSCQAQGPPEP 136
Query: 1457 AA-FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDT-ATLH 1514
W + + + + + + + N G T T
Sbjct: 137 VDLLWLQDAVPLATAPGH--------GPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTAT 188
Query: 1515 VRVLDRPHPPE 1525
+ VL P +
Sbjct: 189 ITVL----PQQ 195
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 90.5 bits (225), Expect = 2e-19
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
V + Y + +IG+G+FG ++ + G A K + + E I +
Sbjct: 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKL--ECVKTKHPQLHIESKIYKMMQGG 64
Query: 1746 KLI-NLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
I + + D V++ E L G L + K S V+ Q+ ++++H
Sbjct: 65 VGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS 123
Query: 1805 KNIIHLDVKPENI-MCQTRNSTNVKMIDFGLATK-LDPNEVVKIS-------TGTAEFA 1854
KN IH DVKP+N M + V +IDFGLA K D I TGTA +A
Sbjct: 124 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA 182
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 84.7 bits (210), Expect = 2e-19
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD--Y 2149
AP F +K + +EG V FTCRV P + WF + +++ D
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLP 2190
+ + ++D G Y I A N G L VQ P
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 77.4 bits (191), Expect = 7e-17
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 2205 VIWLHNNKEIKPSNDF--AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+ W + K+I P +D + +L +D G YT A N +G + L+
Sbjct: 40 IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 2263 VQV 2265
VQ
Sbjct: 100 VQA 102
Score = 63.5 bits (155), Expect = 5e-12
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
AP F +K + +EG V FTCRV P + WF + +++ D T
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L ++ D
Sbjct: 67 -----SLHTTASTLDDD 78
Score = 57.4 bits (139), Expect = 7e-10
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS--IGYHT 330
AP + LK I G + + G P P++ W DGK++ S T+ G +
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ T + D G Y + N GR + + V
Sbjct: 68 LH-TTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 56.2 bits (136), Expect = 2e-09
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP + LK I G + + G P P++ W DGK++ S ++TI
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS--------DHYTI- 58
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+R GT L ++ D+G++TI+
Sbjct: 59 -----QRDLDGTCSLHTTASTLDDDGNYTIM 84
Score = 55.4 bits (134), Expect = 4e-09
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFAND-SIIDDSDTRVHKQLTMNSASLVVKNSQR 1492
+ + G + P+P +WF + I SD ++ + SL S
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
D G Y + NP G + T + V P
Sbjct: 76 DDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 41.2 bits (97), Expect = 3e-04
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQ-TYKMKILSTTLDDVGQYSAQ----MGGIIAAFSL 2318
++ W+KDG +S Y + T + ++TLDD G Y+ G I L
Sbjct: 39 KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Query: 2319 NV 2320
V
Sbjct: 99 MV 100
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 90.0 bits (224), Expect = 2e-19
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 34/223 (15%)
Query: 1663 SDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP 1722
+ DKW + T + + ++G G +G V+ +K A K +
Sbjct: 4 NYDKWE------MERTDIT----------MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 47
Query: 1723 VSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGEL--FERITAPD 1780
+E + KE +M ++ HP L+ L + +I EF++ G L + R
Sbjct: 48 EDTMEVEEFL-KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQ 106
Query: 1781 YKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP 1840
++S ++ Q+ A++++ +KN IH D+ N + + VK+ DFGL+ +
Sbjct: 107 -EVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHL--VKVADFGLSRLMTG 163
Query: 1841 NEVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVL 1876
+ A+F APE + ++ D+WA GVL
Sbjct: 164 DTYTA--HAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVL 201
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A*
3eqr_A* 3eqp_B*
Length = 291
Score = 90.0 bits (224), Expect = 3e-19
Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 1663 SDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHR--CRERKTGNIFAA-- 1718
+ I + L+ +LE++G G+FGVV R + A
Sbjct: 9 QSLTCL------IGEKDLR----------LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVK 52
Query: 1719 --KFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERI 1776
K +S + +E++ M+ L H LI L+ M ++ E G L +R+
Sbjct: 53 CLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLY-GVVLTPPMKMVTELAPLGSLLDRL 111
Query: 1777 TAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLAT 1836
+ Y QV E + ++ K IH D+ N++ TR+ VK+ DFGL
Sbjct: 112 RKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDL--VKIGDFGLMR 169
Query: 1837 KLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
L N+ + + APE + R ++ D W GV
Sbjct: 170 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRT----FSHASDTWMFGVT 213
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB:
1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 91.0 bits (225), Expect = 3e-19
Identities = 42/359 (11%), Positives = 84/359 (23%), Gaps = 98/359 (27%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQEL----------KQSVKFMKRYAGDDYTFYSSLR 2073
+G +V+ TC + W ++NQ K K R +
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 2074 KLQIDRFSIQD---------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT 2124
L I I+D + Q + +GQS+ T ++P+
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPS 127
Query: 2125 LTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + Q T +++ +++D G + + E + + V
Sbjct: 128 VQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
Query: 2185 RKYDLPVIHYK--------------NHRRANKYDVIWLHNNKEIKPSNDFAYS------- 2223
I YK + +W + + +
Sbjct: 178 AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS 237
Query: 2224 --------------SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ----- 2264
+ TL A SG T G+ L+V
Sbjct: 238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQL 297
Query: 2265 -----------------VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+S + + + K + + G +
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLKLENKE------------AKVSKREKAVWVLNPEAGMWQ 344
Score = 65.2 bits (158), Expect = 8e-11
Identities = 52/367 (14%), Positives = 97/367 (26%), Gaps = 62/367 (16%)
Query: 1928 SSTSKERPKFPLHSWLTGDHR---NRTNSINQKNLIKMRDRIRSKYEGWDECVLPLGRLS 1984
+++ K+ +F W + S K K+ DR S+ WD
Sbjct: 17 TASQKKSIQF---HWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD---------- 63
Query: 1985 QYSSLRKLQIDRFSIQD---------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVI 2035
L I I+D + Q + +GQS+ T
Sbjct: 64 --QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESP 121
Query: 2036 AIATPTLTWFHNNQELKQSVK--FMKRYAGDDYTFY---------SSLRKLQIDRFSIQD 2084
++P++ + Q K + + D + K+ I + Q
Sbjct: 122 PGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 181
Query: 2085 TSFDRRQAAPRFVIKPQSAFCYEGQ---SVKFTCRVIAIATP----TLTWFHNNQELKQS 2137
S + V + S + + ++ T + +K+
Sbjct: 182 ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRV 241
Query: 2138 VKFMKRYAGDDYTFVINRTK----MEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIH 2193
+ K G + + G + E G + V L V R L
Sbjct: 242 TQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNL 301
Query: 2194 Y--KNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND 2251
+ K + NKE K S K + ++G++ C +
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSK-----------REKAVWVLNPEAGMWQCLLSDS 350
Query: 2252 EGESFSS 2258
S
Sbjct: 351 GQVLLES 357
Score = 45.6 bits (107), Expect = 1e-04
Identities = 13/140 (9%), Positives = 34/140 (24%), Gaps = 24/140 (17%)
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFAN 1463
E + + Q + D + G+ ++ + P+
Sbjct: 85 EVEDQKEEVQLLVFGLTANS-----------DTHLLQGQSLTLTLESPPGSSPSVQC--- 130
Query: 1464 DSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP 1523
+ +L V + D G + + + + VL
Sbjct: 131 --------RSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 182
Query: 1524 PENLHADEFAGDSLTLYWTP 1543
++ E G+ + +
Sbjct: 183 SSIVYKKE--GEQVEFSFPL 200
Score = 41.3 bits (96), Expect = 0.003
Identities = 25/203 (12%), Positives = 54/203 (26%), Gaps = 25/203 (12%)
Query: 1400 IAVNEAGNSE-------PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMA 1452
+ E Q IV ++ + V + K +
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219
Query: 1453 FPQP---AAFWFANDSIIDDSDTRVHKQLTMNSASLVVK----NSQRSDGGQYRLQLKNP 1505
F N + T+ K L + Q + G L L+
Sbjct: 220 ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAK 279
Query: 1506 AGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITN--YVVEKKDYN 1563
G +++ V+ +NL + + S L + +N ++++ V +
Sbjct: 280 TGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPE 339
Query: 1564 STVWT---------KVSSYVTTP 1577
+ +W + S +
Sbjct: 340 AGMWQCLLSDSGQVLLESNIKVL 362
Score = 40.6 bits (94), Expect = 0.005
Identities = 15/146 (10%), Positives = 36/146 (24%), Gaps = 21/146 (14%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGE------- 300
+ + + A I + ++ L ++ +
Sbjct: 160 TVLQNQKK---VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ 216
Query: 301 ------PPPEVTWTIDGKELKTDSVRTTVT-----SIGYHTIVNTVNTKRSDSGTYHLEL 349
+T+ + KE+ V + H + + + SG L L
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 350 RNTSGRDEGSFTVTVLETISKTNTTT 375
+G+ + V+ T
Sbjct: 277 EAKTGKLHQEVNLVVMRATQLQKNLT 302
Score = 40.6 bits (94), Expect = 0.005
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 278 TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNT 337
T D + G+ L + ++ P V + +V+ +
Sbjct: 101 TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL----------- 149
Query: 338 KRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ DSGT+ + + E + V
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 40.6 bits (94), Expect = 0.006
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 23/120 (19%)
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAAFWFANDSII----------------DDSDTRVHKQLT 1479
+ K G+ + W ++ I +D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 1480 MNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+ L++KN + D Y ++++ + + V + H + G SLTL
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANS-DTHLLQ--GQSLTL 116
Score = 39.8 bits (92), Expect = 0.008
Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 18/161 (11%)
Query: 693 TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNT 752
T D + G+ L + ++ P V + +V+ +
Sbjct: 101 TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL----------- 149
Query: 753 KRSDSGTYHLELRNTSGRDEGSFTI-VPDHLKNLWNTKKS------LHPVLHCRGNHLPI 805
+ DSGT+ + + E I V K K L L
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209
Query: 806 MEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIK 846
+ + + + +S + D ++
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250
Score = 37.1 bits (85), Expect = 0.059
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 266 TCKPRFVAPKIKTPLKDIIIKA-GKILNVEIQFIGEPPPEVTWT--IDGKELKTDSVRTT 322
T K+ + ++++A N+ + G P++ + ++ KE K
Sbjct: 273 TLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK---- 328
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
V ++G + L + SG+ + VL
Sbjct: 329 -----REKA---VWVLNPEAGMWQCLLSD-SGQVLLESNIKVL 362
Score = 34.8 bits (79), Expect = 0.37
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 716 PPPEVTWTIDGKELKTDSVRTTVT-----SIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 770
+T+ + KE+ V + H + + + SG L L +G+
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282
Query: 771 DEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSV 830
+L + T+ + L C + + S K + EA R V
Sbjct: 283 LHQEV-----NLVVMRATQLQKN--LTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV 335
Query: 831 TLS 833
Sbjct: 336 LNP 338
Score = 30.9 bits (69), Expect = 5.6
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 21/117 (17%)
Query: 281 KDIII-KAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV---- 335
K +++ K G + + + + W + + + +T
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 336 ------------NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKN 380
N K DS TY E+ + + V + ++T + ++
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQK----EEVQLLVFGLTANSDTHLLQGQS 113
Score = 30.1 bits (67), Expect = 9.8
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 702 AGKILNVEIQFIGEPPPEVTWT--IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGT 759
N+ + G P++ + ++ KE K V ++G
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK---------REKA---VWVLNPEAGM 342
Query: 760 YHLELRNTSGRDEGSFTI 777
+ L + SG+ I
Sbjct: 343 WQCLLSD-SGQVLLESNI 359
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 116
Score = 84.4 bits (209), Expect = 3e-19
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 8/121 (6%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR 1365
G S P ++ + PD P + V R + + +SW PP + ++GYI+
Sbjct: 1 GSSGSSGP---ENDLDESQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNI-VVRGYIIGYG 55
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNK 1425
+ V +++ L Y + A N AG P +
Sbjct: 56 VGSPYA-ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVP--LYESATTRSITSG 112
Query: 1426 P 1426
P
Sbjct: 113 P 113
Score = 80.2 bits (198), Expect = 9e-18
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 8/110 (7%)
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTN 1281
PD PS V + + ++W PP N + GY + +
Sbjct: 14 ESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYA-ETVRVDSKQ 70
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+++ L Y + A N AG G P + + P +
Sbjct: 71 RYYSIERLESSSHYVISLKAFNNAGEGVPL--YESAT---TRSITSGPSS 115
Score = 79.4 bits (196), Expect = 2e-17
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 5/112 (4%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 222
P D PD+P V + + + WTPP + YII E
Sbjct: 7 GPENDLDESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAETV 64
Query: 223 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
V + S+ L+ Y + A N G G P T + P
Sbjct: 65 -RVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGP 113
Score = 72.9 bits (179), Expect = 3e-15
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 584 EFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPAN 643
E PD P V+ + + ++W PPLN + YII G+PY + V +
Sbjct: 14 ESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGV-GSPYA-ETVRVDSK 69
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
+ I L Y + A N AG P
Sbjct: 70 QRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
Score = 67.8 bits (166), Expect = 2e-13
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P P L V +SW PPL+ + Y++ Y + + + + Y
Sbjct: 18 PDQPSS-LHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIG-YGVGSPYAETVRVDSKQRYY 73
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ LE++ Y ++A N G PL S T + ++ P
Sbjct: 74 SIERLESSSHYVISLKAFNNAGEGVPLY--ESATTR---SITSGPS 114
Score = 67.8 bits (166), Expect = 2e-13
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P P +LH + + + WTPP + + Y++ + T +
Sbjct: 18 PDQPSSLHVRPQT-NCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAETVRVDSKQRYYS- 74
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
+ L S Y + A N G P + + P +
Sbjct: 75 IERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGPSS 115
Score = 57.4 bits (139), Expect = 8e-10
Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 64/165 (38%)
Query: 804 PIMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDAN 863
P + +S+ PD P + V R + + +SW PP + ++GYI+
Sbjct: 8 PENDLDESQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYA---E 62
Query: 864 SVPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVS 923
+V V + Y IE
Sbjct: 63 TVRVDSKQRY----------------------------YSIE------------------ 76
Query: 924 PYDHHATVPRLLEGTTYEFRVRAENLQGLSEP----ITTKEPVVA 964
RL + Y ++A N G P TT+
Sbjct: 77 ---------RLESSSHYVISLKAFNNAGEGVPLYESATTRSITSG 112
Score = 55.9 bits (135), Expect = 3e-09
Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 5/102 (4%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P P + + W P + + Y++ D Y
Sbjct: 17 VPDQPSSLH--VRPQTNCIIMSWTPPLNPNIV-VRGYIIGYGVGSPYAETVRVDSKQRYY 73
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 174
E L Y +KA N GE +PL T + P
Sbjct: 74 SIERLESSSHYVISLKAFNNAGEGVPLY--ESATTRSITSGP 113
Score = 54.7 bits (132), Expect = 7e-09
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 475 GASEPLDPLFPDKPSPPEGPLEVS-NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRG 533
G+S P + D+ P+ P + +SW P++ + YII S
Sbjct: 4 GSSGPEN--DLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPY 60
Query: 534 TWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ + +Y + RL Y+ +KA N+ GE L + TT
Sbjct: 61 AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATT 106
Score = 45.1 bits (107), Expect = 2e-05
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 1610 DPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1658
P VP P + V + I + W+ P + ++ YI+
Sbjct: 7 GPENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLNPNI-VVRGYIIG 53
Score = 37.0 bits (86), Expect = 0.010
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
V Y++ + + K Y + L Y +KA N AG P S
Sbjct: 47 VRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYES 103
Score = 37.0 bits (86), Expect = 0.013
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF--PD 486
YII G +TV + +++++ L YV ++ N G PL
Sbjct: 50 YIIGYGV-GSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108
Query: 487 KPSPPE 492
S P
Sbjct: 109 ITSGPS 114
Score = 35.1 bits (81), Expect = 0.059
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 1134 ITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR 1182
VPD P + TN + W P + ++GY + +
Sbjct: 9 ENDLDESQVPDQPSSLHVRP-QTNCIIMSWTPPL-NPNIVVRGYIIGYG 55
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 83.5 bits (207), Expect = 4e-19
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W ++++ S + + V L + +I D G Y C+ ND GE S L V
Sbjct: 33 QVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Query: 2264 Q 2264
+
Sbjct: 93 K 93
Score = 81.2 bits (201), Expect = 2e-18
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ A EG VK+ C++ T +TW+ ++L+ S K+ Y
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ D G Y + N YG L V+
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 54.2 bits (131), Expect = 7e-09
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ A EG VK+ C++ T +TW+ ++L+ S K+ Y
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI- 59
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L + + D
Sbjct: 60 ------LYVKDITKLDD 70
Score = 52.7 bits (127), Expect = 2e-08
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ + + + G + + +VTW ++L+ G +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + D GTY ++ N G D + V
Sbjct: 61 Y-VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 50.4 bits (121), Expect = 1e-07
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 1415 GPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTR 1473
G ++ + + + G + Q W+ +++S+ +
Sbjct: 1 GAMVSGQ-----------IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-K 48
Query: 1474 VHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
A L VK+ + D G YR ++ N G D++ + V
Sbjct: 49 YEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 49.2 bits (118), Expect = 4e-07
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ + + + G + + +VTW ++L+ G +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDE 772
+ + D GTY ++ N G D
Sbjct: 61 Y-VKDITKLDDGTYRCKVVNDYGEDS 85
Score = 43.1 bits (102), Expect = 5e-05
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 2263 VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
QV+WY + + Y+ T + + T D G Y
Sbjct: 32 TQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDITKLDDGTYR 74
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 90.8 bits (226), Expect = 4e-19
Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 30/228 (13%)
Query: 1659 KRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAA 1718
R + DKW+ + L + E+IG G FG V R R + A
Sbjct: 101 HRAVPKDKWV------LNHEDLV----------LGEQIGRGNFGEVFSGRLRADNTLVAV 144
Query: 1719 KFIPVSHNLEKEL-IRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERIT 1777
K + + + +E I+ Q HP ++ L + ++ E + GG+ +
Sbjct: 145 KSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204
Query: 1778 APDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK 1837
++ ++ + ++++ K IH D+ N + +N +K+ DFG++ +
Sbjct: 205 TEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNV--LKISDFGMS-R 261
Query: 1838 LDPNEVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVLAY 1878
+ + V S G + APE + G Y+ D+W+ G+L +
Sbjct: 262 EEADGVYAASGGLRQVPVKWTAPEALNY---GRYSSESDVWSFGILLW 306
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 89.7 bits (223), Expect = 4e-19
Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 41/230 (17%)
Query: 1662 ISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCR---ERKTGNIFAA 1718
+ I +T L+ L+ +G+G FG VH+ E ++ I
Sbjct: 3 MKVLARI------FKETELR----------KLKVLGSGVFGTVHKGVWIPEGESIKIPVC 46
Query: 1719 ----KFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFE 1774
+ + + + + L H ++ L + L+ ++L G L +
Sbjct: 47 IKVIEDKSGRQSFQAVT--DHMLAIGSLDHAHIVRLL-GLCPGSSLQLVTQYLPLGSLLD 103
Query: 1775 RITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGL 1834
+ + ++N+ Q+ + + ++ E ++H ++ N++ ++ + V++ DFG+
Sbjct: 104 HVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQ--VQVADFGV 161
Query: 1835 ATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
A L P++ + + A+ A E I + YT D+W+ GV
Sbjct: 162 ADLLPPDDKQLLYSE-AKTPIKWMALESIHFGK----YTHQSDVWSYGVT 206
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding, cardiomyopathy;
1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T
2wwm_D 2y9r_T*
Length = 100
Score = 83.1 bits (206), Expect = 5e-19
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS--VKFMKRYAGDDYT 2150
P+ P EG+ + C TP +TW +++ +F D T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+I + +D G Y + N +G V ++++
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 81.6 bits (202), Expect = 2e-18
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHT 330
+ PKI+ DI I GK+L V F GEP PEVTW+ G+++ + R + + T
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ ++ ++ D G Y L L N G D + + +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 75.8 bits (187), Expect = 2e-16
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 687 LAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK-TDSVRTTVTSIGYHT 745
+ PKI+ DI I GK+L V F GEP PEVTW+ G+++ + R + + T
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ ++ ++ D G Y L L N G D + I
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 69.6 bits (171), Expect = 3e-14
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 2204 DVIWLHNNKEIKPSND--FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+V W ++I F + + TL I ++ +D G+YT N+ G ++ +
Sbjct: 36 EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Query: 2262 LVQ 2264
++
Sbjct: 96 HIR 98
Score = 66.2 bits (162), Expect = 5e-13
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT-RVHKQLTMNSASLVVKNSQR 1492
DI++ G+ ++ F P P W I + R H + T + +L++ + Q+
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLD 1519
DGG Y L L N G D+AT+++ +
Sbjct: 73 QDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 53.1 bits (128), Expect = 2e-08
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS--VKFMKRYAGDDYT 2067
P+ P EG+ + C TP +TW +++ +F D T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L I QD
Sbjct: 65 -------LIIMDVQKQDG 75
Score = 40.0 bits (94), Expect = 7e-04
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 2264 QVSWYKDGNPV-SDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ----MGGIIAAFSL 2318
+V+W G + S + + + I+ D G Y+ G A ++
Sbjct: 36 EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Query: 2319 NV 2320
++
Sbjct: 96 HI 97
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 83.2 bits (206), Expect = 5e-19
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 1327 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHT 1385
PP KV IT + ++W+PP I+G +V +K + T
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ NL Y R++A N S P
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPP 83
Score = 80.9 bits (200), Expect = 3e-18
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 589 DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK 648
P V + + W+PP+ PI ++ K +P +++ ++ T +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ +L YE R++A N S P +
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 80.1 bits (198), Expect = 7e-18
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 1227 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLNFT 1285
P +VT + ++ + W PP PI G V + + ++ + T
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+ +L YE R++A N P T
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 72.4 bits (178), Expect = 3e-15
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 175 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATS 233
P VT+ + W PP PI ++ K P ++ + + ++IT+ +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKAS 262
+ +L+ YE R++A N P +
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 70.5 bits (173), Expect = 2e-14
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK-VSSYVT 1575
+L PP N+ + + W PP I +V N V +
Sbjct: 1 MLQ---PPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSS 53
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
+ + NL +TYE R++A N S P T
Sbjct: 54 ITSLTLTNLEPNTTYEIRIVARNGQQYSPPVST 86
Score = 69.7 bits (171), Expect = 2e-14
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA-- 1100
PP + V++IT + ++W+PP+ PI +V + + + + S
Sbjct: 3 QPPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVT-FGRKNDPSDETTVDLTSSITS 56
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1140
+ LE N Y R+ A N S P+ T
Sbjct: 57 LTLTNLEPNTTYEIRIVARNGQQYSPPVS-TTFTTGSLEH 95
Score = 63.9 bits (156), Expect = 3e-12
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 75 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 134
PP +K +NIT ++ + W+ P I +V D++ + T
Sbjct: 3 QPPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 135 --ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 171
NL Y R+ A N S P+ + T
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVS-TTFTTGSLEH 95
Score = 60.9 bits (148), Expect = 3e-11
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 489 SPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS--LFY 546
PP ++V+N+T + ++W+ P+ PI ++ + + S
Sbjct: 3 QPPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
+ L Y R+ A N S + TT TT +
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGS 92
Score = 53.2 bits (128), Expect = 2e-08
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITT 958
G ++ ++ T+ L TTYE R+ A N Q S P++T
Sbjct: 30 EGILVTFG--RKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVST 86
Score = 49.3 bits (118), Expect = 4e-07
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 815 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHT 873
PP KV IT + ++W+PP I+G +V +K + T
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 874 L 874
L
Sbjct: 59 L 59
Score = 44.7 bits (106), Expect = 1e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1875 VLAYVL--DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ ++ D + D + + +L YE R+ A+N +S P ST+
Sbjct: 29 IEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 41.2 bits (97), Expect = 2e-04
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF 484
++ + +T T+ L Y RI N S P+ F
Sbjct: 32 ILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTF 88
Score = 34.7 bits (80), Expect = 0.062
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 1144 DPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
PP ++ + A + W P I+G V F +D
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSD 44
Score = 33.9 bits (78), Expect = 0.100
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 1623 APGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
P K + T + + W P PI+ +V +D TS
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITS 56
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 89.3 bits (222), Expect = 6e-19
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 29/202 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
++ +G+GAFG V++ G IPV S KE++ E +M +
Sbjct: 19 KIKVLGSGAFGTVYKGLWIPEGE---KVKIPVAIKELREATSPKANKEILD-EAYVMASV 74
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
+P + L + LI + + G L + + + ++N+ Q+ + + ++
Sbjct: 75 DNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL 133
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPE- 1857
++ ++H D+ N++ +T +VK+ DFGLA L E + G + A E
Sbjct: 134 EDRRLVHRDLAARNVLVKTPQ--HVKITDFGLAKLLGAEEKEYHAEG-GKVPIKWMALES 190
Query: 1858 IVEREPVGFYT---DMWAVGVL 1876
I+ R YT D+W+ GV
Sbjct: 191 ILHRI----YTHQSDVWSYGVT 208
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus,
virus/receptor complex; 15.00A {Homo sapiens} SCOP:
i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 89.0 bits (220), Expect = 6e-19
Identities = 38/306 (12%), Positives = 77/306 (25%), Gaps = 61/306 (19%)
Query: 2013 FVIKPQSAFCYEGQSVKFTCRVIAIATPT-----LTWFHNNQELKQSVKFMK-------- 2059
V P + G SV C + LTW + + +V
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 2060 ---RYAGDDYTFYSSLRKLQIDRFSIQD--------TSFDRR----------QAAPRFVI 2098
+ L++ ++D +F + A P+
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 2099 KPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDY---TFVIN 2154
+ Q C +TW + + + + +G +++
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 2155 RTKMEDRGEYIIRAENHYG--YREEVVFLNVQRKYDLPVIHYKNHRRANKYDVI------ 2206
+ D + E+ + V L V ++ + Y N+ + +
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 2207 ---------WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
W + P +VA L I + + C N G +
Sbjct: 243 SNPEPTGYNWSTTMGPLPPF------AVAQGAQLLIRPVDKPINTTLICNVTNALGARQA 296
Query: 2258 SCTLLV 2263
T+ V
Sbjct: 297 ELTVQV 302
Score = 72.4 bits (177), Expect = 2e-13
Identities = 24/203 (11%), Positives = 39/203 (19%), Gaps = 42/203 (20%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
A P+ + Q C +TW + + + + +
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV-PGFLSGTV 173
Query: 2067 TFYSSLRKLQIDRFSIQDTSFDRR------------------------QAAPRFVIKPQS 2102
T S + +S P I
Sbjct: 174 TVTSLWI--------LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 225
Query: 2103 AFCY-EGQSVKFTCRVIAIATPT-LTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMED 2160
Y TC + PT W L +I
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV------AQGAQLLIRPVDKPI 279
Query: 2161 RGEYIIRAENHYGYREEVVFLNV 2183
I N G R+ + + V
Sbjct: 280 NTTLICNVTNALGARQAELTVQV 302
Score = 60.5 bits (146), Expect = 2e-09
Identities = 32/289 (11%), Positives = 59/289 (20%), Gaps = 85/289 (29%)
Query: 2096 FVIKPQSAFCYEGQSVKFTCRVIAIATPT-----LTWFHNNQELK--------------- 2135
V P + G SV C + LTW + +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 2136 ---QSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENH-YGYREEVVFLNVQRKYDLPV 2191
+ V + + + ++ED G Y G R ++L V K
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 2192 IHYKNHRRANKY--------------DVIWLHNNKEIKPSNDFAYSS---VAHVHTLKIA 2234
K + W + + ++ V +
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 2235 EIFPEDSGVYTCEAFNDEGESF--SSCTLLVQ---------------------------- 2264
D TC+ ++ E + L V
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 2265 -------VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+W P+ + Q ++ I
Sbjct: 243 SNPEPTGYNWSTTMGPLPP-------FAVAQGAQLLIRPVDKPINTTLI 284
Score = 51.6 bits (123), Expect = 1e-06
Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 28/219 (12%)
Query: 153 IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE---WTPPKKDGGSPISQYI 209
+G+S+ L C + W + + + S +
Sbjct: 14 LGDSVTLPCYLQ-------VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 210 IEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
A + + V D EG Y + P +
Sbjct: 67 FVAARLGAELRNASLR---MFGLRVED--EGN-YTCLFVT----FPQGSRSVDIWLRV-- 114
Query: 270 RFVAPKIKTPLKDIIIKAGKILNVE-IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 328
P+ ++ + + + + G PP ++TW D + S S G
Sbjct: 115 -LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS-GT 172
Query: 329 HTIVNT---VNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
T+ + V + + D ++ + S TV +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211
Score = 44.7 bits (105), Expect = 2e-04
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 11/118 (9%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 306
++ V + + + + P P
Sbjct: 195 KVEHESFEKP---QLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYN 251
Query: 307 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
W+ L V I + + T + N G + TV V
Sbjct: 252 WSTTMGPLP----PFAVAQGAQLLIRPV---DKPINTTLICNVTNALGARQAELTVQV 302
Score = 40.5 bits (94), Expect = 0.005
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 689 PKIKTPLKDIIIKAGKILNVE-IQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P+ ++ + + + + G PP ++TW D + S S G T+
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS-GTVTVT 176
Query: 748 NT---VNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ V + + D ++ + S T+
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTV 209
Score = 39.7 bits (92), Expect = 0.009
Identities = 11/116 (9%), Positives = 26/116 (22%), Gaps = 11/116 (9%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 721
+E+ ++ + + + + + P P
Sbjct: 195 KVEHESFEKPQLLTVNLTV---YYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYN 251
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
W+ L V I + + T + N G + T+
Sbjct: 252 WSTTMGPLP----PFAVAQGAQLLIRPV---DKPINTTLICNVTNALGARQAELTV 300
Score = 37.4 bits (86), Expect = 0.041
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 12/119 (10%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF 1459
+E+ Q V + V +SG + + ++ + P+P +
Sbjct: 195 KVEHESF---EKPQLLTVNLTVYYPPEVS-ISGYDNNWYLGQNEATLTCDARSNPEPTGY 250
Query: 1460 -WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
W + A L+++ + + N G A L V+V
Sbjct: 251 NWSTTMGPLPPF-------AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 83.8 bits (207), Expect = 7e-19
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 9/117 (7%)
Query: 1219 IQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPIT---GYYVEKRERGGEWLRAN 1275
+ P P + + +V ++W + + + Y V R +
Sbjct: 12 VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71
Query: 1276 NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ TT+L++T L+ YEF V+ S +
Sbjct: 72 SEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA------HATTYEASGPSS 122
Score = 73.8 bits (181), Expect = 2e-15
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPP---KHDGGARIKGYIV 1362
G S V + PP + +T D+V +SW K+ + ++ Y V
Sbjct: 1 GSSGSSGFPTSVP--DLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTV 58
Query: 1363 QKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ R S + +T L Y F V+ +S
Sbjct: 59 RWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106
Score = 68.0 bits (166), Expect = 2e-13
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 163 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPW 219
P + D P D V + W K S + Y + + +
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 220 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
K + + LK YEF V+ S + T
Sbjct: 68 AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Score = 65.3 bits (159), Expect = 2e-12
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 574 ETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD---YIIQKKEKG 630
+ T + P D V ++W ++ Y ++ +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 631 NPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ L YEF V+ S S
Sbjct: 65 SASA-KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSM 108
Score = 64.5 bits (157), Expect = 4e-12
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 1037 PITDKPSPPQGPLDV--SDITPESCSLSWKPPLDDGGSPITN---YVVEKYESATGFWSK 1091
+ D +P P+ V +T ++ +SW + Y V S +
Sbjct: 11 SVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKY 70
Query: 1092 LSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
S S +Y GL+ N Y F V S + A T
Sbjct: 71 KSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW---SMTAHAT---TYEASGP 120
Score = 64.1 bits (156), Expect = 4e-12
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGG---SEITNYVVEKKDYNSTVWTKVSSYVTTP 1577
PP + A D++ + W SE+ Y V + S S T+
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
L + YEF VM S ++T
Sbjct: 79 SYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
Score = 56.4 bits (136), Expect = 3e-09
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWVPMGDVSG 129
PP G ++ +T + + W ++ +++ Y V + D +
Sbjct: 19 MLPPVG-VQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTS 77
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGES 156
A L Y F V S
Sbjct: 78 LSYTATGLKPNTMYEFSVMVTKNRRSS 104
Score = 52.6 bits (126), Expect = 6e-08
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 475 GASEPLDPLFPDKPSPPEGP--LEVSNVTKESCKLSWRVPVDDGG---APILHYIIE-KM 528
G+S + PD +P P ++ +T ++ ++SW + + Y + +
Sbjct: 4 GSSGFPTSV-PDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRT 62
Query: 529 DISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
S + T SL Y L Y F V + S
Sbjct: 63 SFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
Score = 46.8 bits (111), Expect = 5e-06
Identities = 20/154 (12%), Positives = 29/154 (18%), Gaps = 59/154 (38%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP + +T D+V +SW +
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVR------------------------ 54
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y + R + + T
Sbjct: 55 ---------------------------LYTVRWRTSFSASAKYKSED---TTSLSYTATG 84
Query: 934 LLEGTTYEFRVRAENLQGLSEP-----ITTKEPV 962
L T YEF V + S TT E
Sbjct: 85 LKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEAS 118
Score = 38.3 bits (89), Expect = 0.005
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 1878 YVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
+ + ++ + +Y L YEF V S S T+
Sbjct: 60 WRTSFSASAKYKSED---TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHAT 113
Score = 35.2 bits (81), Expect = 0.048
Identities = 8/51 (15%), Positives = 13/51 (25%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP 479
Y + + K +T GL Y F + +S
Sbjct: 56 YTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106
Score = 31.0 bits (70), Expect = 1.6
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 1608 TIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKP---RHDGGSPIQRYIVEKRLISD 1664
+ P P + V T D++ + W+ ++ S ++ Y V R
Sbjct: 6 SGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS 65
Query: 1665 DKWIKASMAHIPDTSLKYT 1683
TSL YT
Sbjct: 66 ASA---KYKSEDTTSLSYT 81
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 88.5 bits (220), Expect = 7e-19
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 1664 DDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV 1723
D K + +L E+G G FG V + R K I V
Sbjct: 1 DKKLF------LKRDNLLIADI---------ELGCGNFGSVRQGVYRMRK-----KQIDV 40
Query: 1724 --------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFER 1775
+ + E + +E IM+QL +P ++ L + ++L+ E GG L +
Sbjct: 41 AIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLI-GVCQAEALMLVMEMAGGGPLHKF 99
Query: 1776 ITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLA 1835
+ ++ + V + QV +K++ EKN +H D+ N++ R+ K+ DFGL+
Sbjct: 100 LVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRH--YAKISDFGLS 157
Query: 1836 TKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVLAY 1878
L ++ + ++ APE I R+ ++ D+W+ GV +
Sbjct: 158 KALGADDSYYTARSAGKWPLKWYAPECINFRK----FSSRSDVWSYGVTMW 204
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 88.8 bits (219), Expect = 8e-19
Identities = 39/294 (13%), Positives = 67/294 (22%), Gaps = 46/294 (15%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
+ PP L VS + +W PP N + + K + +
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASS----NCSLWYFSHFGDKQDKKIA-PETRR 56
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNAT 1160
L + + + DP + +N +
Sbjct: 57 SIEVPLNERICLQVGSQCSTNESEKP----SILVEKCISPPEGDPESAVTELQCIWHNLS 112
Query: 1161 LM---WDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQ-----CHADV------GQTPH 1206
M W R RS C +++ C D+ H
Sbjct: 113 YMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172
Query: 1207 GWWLQDSRIQGRIQS--------PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPIT 1258
+ G+I+ PD P ++ + + + W P N R +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCLF 231
Query: 1259 GYYVEKRERGGEWLRANNYPTTNLN-------------FTVHDLREGGKYEFRV 1299
Y VE E F V + R+
Sbjct: 232 -YEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 80.7 bits (198), Expect = 4e-16
Identities = 49/324 (15%), Positives = 91/324 (28%), Gaps = 53/324 (16%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEF-------RSTRTATDCGLG 1193
T P P + + W+ P + Y F + T +
Sbjct: 3 TQP-PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEVP 61
Query: 1194 YQ---------QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSL 1244
QC + + P + DP A ++ + ++ S +
Sbjct: 62 LNERICLQVGSQCSTNESEKPSILVEKCISP-----PEGDPESAVTELQCIWHNLSYMKC 116
Query: 1245 AWNPPANHGGRPITGYYVEKRERGGEW-------LRANNYPTTNLNFTVHDLREGGKYEF 1297
+W P N P T Y + R E R Y + + T ++
Sbjct: 117 SWLPGRNTS--PDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSV 174
Query: 1298 RVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARI 1357
+++ + AG KPS + + KPDPP + D + + W P++ +
Sbjct: 175 QIMVKDNAGKIKPS---FNIVPLTSRVKPDPPHIKNL-SFHNDDLYVQWENPQNFISRCL 230
Query: 1358 KGYIVQKRKKGGDWVDANSVPVPNPV-------------HTVGNLSEGEEYTFRVIAVNE 1404
Y V+ + + V V + T R+
Sbjct: 231 F-YEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTN 289
Query: 1405 AGNSEPGKQ----SGPVIVEEQPN 1424
E K S + + ++ N
Sbjct: 290 KLCYEDDKLWSNWSQEMSIGKKRN 313
Score = 68.8 bits (167), Expect = 4e-12
Identities = 37/290 (12%), Positives = 72/290 (24%), Gaps = 34/290 (11%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG 1387
P V +V +W PP+ Y K +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPE-----TRRSIEV 60
Query: 1388 NLSEGEEYTFRVIAVNEAGNSE-PGKQSGPVIVEEQPNKPVMDLS----GVRDITV--KA 1440
L+E + E P V +L + +
Sbjct: 61 PLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLP 120
Query: 1441 GEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRL 1500
G + S + + + + + I + Q S L + ++
Sbjct: 121 GRNTSPDTNYTLY----YWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQI 176
Query: 1501 QLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVV 1557
+K+ AG + + +P PP + F D L + W P++ + Y V
Sbjct: 177 MVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNL-SFHNDDLYVQWENPQNFISRCLF-YEV 234
Query: 1558 EKKDYNSTVWTKV-------------SSYVTTPFVRVRNLAIGSTYEFRV 1594
E + + + T V + + R+
Sbjct: 235 EVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 68.0 bits (165), Expect = 7e-12
Identities = 27/210 (12%), Positives = 59/210 (28%), Gaps = 17/210 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
PP + V+ + +V WNPP Y+ ++ + +
Sbjct: 5 PP--VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETR-----RS 57
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
L E + KPS + + + +
Sbjct: 58 IEVPLNERICLQVGSQCSTNES-EKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKC 116
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH-------TVGNLSEGEEYTF 1397
SW P ++ Y + + + + + T S E+++
Sbjct: 117 SWLPGRNTS--PDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSV 174
Query: 1398 RVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
+++ + AG +P P+ +P+ P
Sbjct: 175 QIMVKDNAGKIKPSFNIVPLTSRVKPDPPH 204
Score = 62.2 bits (150), Expect = 6e-10
Identities = 28/212 (13%), Positives = 52/212 (24%), Gaps = 14/212 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
PP L S + W P L Y D + +
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKKIAPETRRSI 58
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 193
L E + E P + + + ++
Sbjct: 59 EVPLNERICLQVGSQCSTNESEK-PSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCS 117
Query: 194 WTPPKKDGGSPISQYIIEKKPKYGPWEKAC-------IVPANITATSVPDLKEGEEYEFR 246
W P + SP + Y + + C + E++ +
Sbjct: 118 WLPGR--NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQ 175
Query: 247 VIAVNKGGPGEPSKASAPVTCKPRFVAPKIKT 278
++ + G +PS P+T + + P IK
Sbjct: 176 IMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKN 207
Score = 61.8 bits (149), Expect = 7e-10
Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 13/213 (6%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFY 546
+ PP L VS + +W P L Y D +
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEV- 60
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDL 606
L R + + E + + ++ E D A + ++
Sbjct: 61 ---PLNERICLQVGSQCSTNESEKPS-ILVEKCISPPEGDPESAVTELQCIWHNLSYMKC 116
Query: 607 AWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT------DVKIPDLTKGQEYEF 660
+W P N SP T+Y + + + D+ + +++
Sbjct: 117 SWLPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSV 174
Query: 661 RVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKT 693
+++ + AG +PS + + + P IK
Sbjct: 175 QIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKN 207
Score = 61.5 bits (148), Expect = 9e-10
Identities = 25/259 (9%), Positives = 63/259 (24%), Gaps = 29/259 (11%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYG--ASEPLDPLF 484
S + + D L E + S ++
Sbjct: 32 SNCSLWYFSHFGDKQDKKIA-PETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCI 90
Query: 485 PDKP-SPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTW------SD 537
P E+ + + +P +Y + S
Sbjct: 91 SPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFR 150
Query: 538 AGMTVSLFYDVPRL--IHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPT 595
G +D+ ++ +++ ++ ++ G ++ + V +PD P
Sbjct: 151 EGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAG---KIKPSFNIVPLTSRVKPDPPHIKN 207
Query: 596 VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW------------MNALEVPAN 643
+ + D + + W+ P N + Y ++ N
Sbjct: 208 LS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTETHNVFYVQEAKCENPEFERNVEN 265
Query: 644 KTDVKIPDLTKGQEYEFRV 662
+ +P + R+
Sbjct: 266 TSCFMVPGVLPDTLNTVRI 284
Score = 55.3 bits (132), Expect = 9e-08
Identities = 34/361 (9%), Positives = 73/361 (20%), Gaps = 77/361 (21%)
Query: 587 EPDAPEKP-TVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
E P +V V W PP + + +
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASS----NCSLWYFSHFGDKQDKKIAP--ETR 55
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKI 705
L + + I + +
Sbjct: 56 RSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVT------------- 102
Query: 706 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELR 765
++ + + +W G+ D+ T ++ + +
Sbjct: 103 -ELQCIWHNLSYMKCSWL-PGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSF- 159
Query: 766 NTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRI 825
+ + + SF + + + + P + + KPDPP +
Sbjct: 160 DLTKVKDSSFEQHSVQI-MVKDNAGKIKPSFNI-------VPLTSRVKPDPPHIKNL-SF 210
Query: 826 TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLA 885
D + + W P++ + Y V+ + + V
Sbjct: 211 HNDDLYVQWENPQNFISRCLF-YEVEVNNSQTETHNVFYVQEAKCE-------------- 255
Query: 886 EEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVR 945
P VP +L T R+R
Sbjct: 256 ------------------------------NPEFERNVENTSCFMVPGVLPDTLNTVRIR 285
Query: 946 A 946
Sbjct: 286 V 286
Score = 49.1 bits (116), Expect = 1e-05
Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 37/244 (15%)
Query: 53 RTNTAQFAVGKCALALQWLHIPSPPEGPLKPSNIT-----KSSCNLEWRAPRDDGGTDIL 107
+ + K ++ ++ P + + + S W R+ +
Sbjct: 71 GSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN--TSPDT 128
Query: 108 HYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD--------YNFRVKAVNKIGESLPL 159
+Y + + ++ + ++ ++ + G+ P
Sbjct: 129 NYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKP- 187
Query: 160 VCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPW 219
I +PD P ++ + D + ++W P+ + Y +E
Sbjct: 188 --SFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCL-FYEVEVNNSQTET 243
Query: 220 EKACIVPA-------------NITATSVPDLKEGEEYEFRVIA----VNKGGPGEPSKAS 262
V N + VP + R+ + S S
Sbjct: 244 HNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWS 303
Query: 263 APVT 266
++
Sbjct: 304 QEMS 307
Score = 43.0 bits (100), Expect = 7e-04
Identities = 30/321 (9%), Positives = 76/321 (23%), Gaps = 48/321 (14%)
Query: 811 SRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 870
+ P V +V +W PP+ Y K + +
Sbjct: 1 TETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETR---RS 57
Query: 871 VHTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNH----VSPYD 926
+ L+ Q + + E ++ ++ ++ G + +
Sbjct: 58 IEVPLNERICLQV------GSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNL 111
Query: 927 HHATV-----PRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQY----GKELDKWTN 977
+ T Y +L+ + + + +
Sbjct: 112 SYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQ 171
Query: 978 YDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRP 1037
+ V + ++ + PD P ++ + + + W P N R
Sbjct: 172 HSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRC 229
Query: 1038 ITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
+ + + T+ V E+ +
Sbjct: 230 LF-------------------YEVEVNNSQTE-----THNVFYVQEAKCENPEFERNVEN 265
Query: 1098 SPAYDVFGLETNRQYRFRVRA 1118
+ + V G+ + R+R
Sbjct: 266 TSCFMVPGVLPDTLNTVRIRV 286
Score = 38.0 bits (87), Expect = 0.030
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 462 KKYVFRIRTENMYGASEPLDPLFP----DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGG 517
+++ +I ++ G +P + P KP PP ++ + + + W P +
Sbjct: 170 EQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPH--IKNLSFHNDDLYVQWENPQNFIS 227
Query: 518 APILHYIIEKMDISRGTWS--------------DAGMTVSLFYDVPRLIHRKEYLFRVKA 563
L Y +E + T + + + + + VP ++ R++
Sbjct: 228 R-CLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo
sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A*
2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A*
3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A*
3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 91.0 bits (226), Expect = 9e-19
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 24/232 (10%)
Query: 1650 SPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRE 1709
+ + + ++ D W IP SL+ + ++G G FG V
Sbjct: 162 TVCPTSKPQTQGLAKDAWE------IPRESLR----------LEVKLGQGCFGEVWMGTW 205
Query: 1710 RKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSG 1769
T + A K + + + +E +M +L H KL+ L+ ++ + + E++S
Sbjct: 206 NGTTRV-AIKTLKPGTMSPEAFL-QEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSK 262
Query: 1770 GELFERITAPDYK-MSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVK 1828
G L + + K + ++++ Q+ + ++ N +H D++ NI+ K
Sbjct: 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLV--CK 320
Query: 1829 MIDFGLATKLDPNEVVKISTGT--AEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
+ DFGLA ++ NE ++ APE +D+W+ G+L
Sbjct: 321 VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT 372
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 89.0 bits (221), Expect = 9e-19
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 29/211 (13%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 1747
+LE G FG V + + A K P+ + E+ + + H +
Sbjct: 24 MPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQ-NEYEVYSLPGMKHENI 80
Query: 1748 INLHDA----FEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
+ A D ++ LI F G L + + A +S E+ + + + ++H
Sbjct: 81 LQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLH 138
Query: 1804 EK----------NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GT 1850
E I H D+K +N++ +N+ + DFGLA K + + + GT
Sbjct: 139 EDIPGLKDGHKPAISHRDIKSKNVL--LKNNLTACIADFGLALKFEAGKSAGDTHGQVGT 196
Query: 1851 AEFAAPEIVEREPVGFYT-----DMWAVGVL 1876
+ APE++E DM+A+G++
Sbjct: 197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLV 227
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 82.5 bits (204), Expect = 1e-18
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 1224 DPPDAPSQPEVTGY--SPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTT 1280
PDAP +++ + + W PP + G I Y VE G W +
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMW---ASQRAA 61
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
+ + +L Y RV A+ G G S I K P
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSI-----TTIKGSGP 105
Score = 78.3 bits (193), Expect = 3e-17
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 1326 PDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 1383
PD P ++ R + + W PP H G I+ YIV+ + G S +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSK--MWASQRAASNF 64
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ NL YT RV AV G G S +
Sbjct: 65 TEIKNLLVNTLYTVRVAAVTSRG---IGNWSDSKSITTIKGSG 104
Score = 77.1 bits (190), Expect = 9e-17
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 586 DEPDAPEKPTVKDW--GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPAN 643
PDAP + E + W PP++ G I +YI++ G+ W + A
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS---QRAA 61
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
+I +L Y RV AV G SD+ I
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSI 97
Score = 68.6 bits (168), Expect = 8e-14
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 1040 DKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
P P+ L + W PP+ G I Y+VE S + W+ S
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR--AAS 62
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
++ L N Y RV A G+
Sbjct: 63 NFTEIKNLLVNTLYTVRVAAVTSRGIGNW 91
Score = 66.7 bits (163), Expect = 4e-13
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 1521 PHPPENLHADEFAGD--SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P P NL + +W PP G I Y+VE S +W + F
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR--AASNF 64
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKP 1605
++NL + + Y RV A G+
Sbjct: 65 TEIKNLLVNTLYTVRVAAVTSRGIGNW 91
Score = 63.6 bits (155), Expect = 4e-12
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 174 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 231
PD P ++ + + W PP G I +YI+E + A
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRS--GSKMWASQRAASNF 64
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
T + +L Y RV AV G G S + + T K
Sbjct: 65 TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
Score = 60.1 bits (146), Expect = 7e-11
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 74 PSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
P P L + W P G I Y+VE + W + +T
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR-AASNFT 65
Query: 133 RAENLIEGHDYNFRVKAVNKIGES 156
+NL+ Y RV AV G
Sbjct: 66 EIKNLLVNTLYTVRVAAVTSRGIG 89
Score = 54.4 bits (131), Expect = 9e-09
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 486 DKPSPPEGP-LEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSL 544
P P L + + W P+ G I YI+E W+ S
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQ-RAASN 63
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGE---SDTLETT 576
F ++ L+ Y RV AV S G SD+ T
Sbjct: 64 FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSIT 98
Score = 47.4 bits (113), Expect = 2e-06
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL--FPD 486
YI+E + G W + F +K L Y R+ G D
Sbjct: 43 YIVEYSRSGSKMWASQR--AASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100
Query: 487 KPSPP 491
K S P
Sbjct: 101 KGSGP 105
Score = 46.7 bits (111), Expect = 4e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 814 PDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 871
PD P ++ R + + W PP H G I+ YIV+ + G S +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSK--MWASQRAASNF 64
Query: 872 HTL 874
+
Sbjct: 65 TEI 67
Score = 40.9 bits (96), Expect = 5e-04
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 1622 GAPGAPKGV-----DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
P AP+ + E I W+ P H G I+ YIVE W
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS 57
Score = 35.9 bits (83), Expect = 0.023
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 1141 TVPDPPGQPQIVDWDTNNA--TLMWDRPRTDGGSKIQGYKVEFRST 1184
+ PD P Q+ W P G I+ Y VE+ +
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRS 50
Score = 35.1 bits (81), Expect = 0.047
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 1885 DTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPK 1936
W + +LL Y RV A + G S +
Sbjct: 52 SKMWASQR---AASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 88.5 bits (220), Expect = 1e-18
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIMNQLH 1743
I + IG+G G V R R G + +PV ++ E IM Q
Sbjct: 53 IEKIIGSGDSGEVCYGRLRVPGQ----RDVPVAIKALKAGYTERQRRDFLSEASIMGQFD 108
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
HP +I L +++ E++ G L + D + + +++ +R V ++++
Sbjct: 109 HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS 168
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPEIV 1859
+ +H D+ N++ + K+ DFGL+ L+ + +T + APE +
Sbjct: 169 DLGYVHRDLAARNVLVDSNLV--CKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAI 226
Query: 1860 EREPVGFYT---DMWAVGVLAY 1878
++ D+W+ GV+ +
Sbjct: 227 AF---RTFSSASDVWSFGVVMW 245
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 87.2 bits (217), Expect = 1e-18
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 1751
+L+E+G+G FGVV + + ++ A K I E E +E M +L HPKL+ +
Sbjct: 12 LLKELGSGQFGVVKLGKWKGQYDV-AVKMIKEGSMSEDEFF-QEAQTMMKLSHPKLVKFY 69
Query: 1752 DAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLD 1811
+ + ++ E++S G L + + + ++++ VCE + + IH D
Sbjct: 70 GVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRD 129
Query: 1812 VKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPEIVEREPVGFY 1867
+ N + VK+ DFG+ + ++ +S+ +F +APE+ Y
Sbjct: 130 LAARNCLVDRDLC--VKVSDFGMTRYVLDDQY--VSSVGTKFPVKWSAPEVFHY---FKY 182
Query: 1868 T---DMWAVGVLAY 1878
+ D+WA G+L +
Sbjct: 183 SSKSDVWAFGILMW 196
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 88.6 bits (220), Expect = 1e-18
Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINL- 1750
++++IG G +G V + R G A K + EI + H ++
Sbjct: 41 MVKQIGKGRYGEVWMGKWR--GEKVAVKVFF-TTEEASWFRETEIYQTVLMRHENILGFI 97
Query: 1751 ---HDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN- 1806
++ LI ++ G L++ + + ++ + H+H +
Sbjct: 98 AADIKGTGSWTQLYLITDYHENGSLYDYLK--STTLDAKSMLKLAYSSVSGLCHLHTEIF 155
Query: 1807 -------IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNE-----VVKISTGTAEFA 1854
I H D+K +NI+ + + + D GLA K + GT +
Sbjct: 156 STQGKPAIAHRDLKSKNIL--VKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYM 213
Query: 1855 APEI------VEREPVGFYTDMWAVGV 1875
PE+ DM++ G+
Sbjct: 214 PPEVLDESLNRNHFQSYIMADMYSFGL 240
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A*
3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Length = 283
Score = 87.3 bits (217), Expect = 1e-18
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 1662 ISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI 1721
+ W I L L+E+GTG FGVV + R ++ A K I
Sbjct: 14 LGYGSW------EIDPKDLT----------FLKELGTGQFGVVKYGKWRGQYDV-AIKMI 56
Query: 1722 PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDY 1781
E E I E +M L H KL+ L+ + +I E+++ G L + +
Sbjct: 57 KEGSMSEDEFIE-EAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH 115
Query: 1782 KMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPN 1841
+ +++ + VCEA++++ K +H D+ N + + VK+ DFGL+ + +
Sbjct: 116 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGV--VKVSDFGLSRYVLDD 173
Query: 1842 EVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVLAY 1878
E S+ ++F + PE++ ++ D+WA GVL +
Sbjct: 174 EYT--SSVGSKFPVRWSPPEVLMY---SKFSSKSDIWAFGVLMW 212
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 126
Score = 82.5 bits (204), Expect = 2e-18
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 1303 NEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI--TKDSVTLSWRPPKHDGGARIKGY 1360
+ G + + + PE P + S+ +SW PP++ ++GY
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIV-VRGY 60
Query: 1361 IVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
+ V +T+ NL Y + A N G P +
Sbjct: 61 AIGYGIGSPHA-QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIP--LYESAVTR 117
Query: 1421 EQPNKP 1426
+ P
Sbjct: 118 PHTSGP 123
Score = 76.0 bits (187), Expect = 3e-16
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
P+ PS V +S+ ++W PP N + GY + G +
Sbjct: 26 RVPEVPSSLHVRPLV-TSIVVSWTPPENQNI-VVRGYAIGYGI-GSPHAQTIKVDYKQRY 82
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+T+ +L Y + A N G G P + + P +
Sbjct: 83 YTIENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPH---TSGPSS 125
Score = 74.4 bits (183), Expect = 1e-15
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 151 NKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ 207
+ + L ++ + D P+ P V + + WTPP+ +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNI-VVRG 59
Query: 208 YIIEKKPKYG---PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 264
Y I YG P + V ++ +L Y + A N G G P
Sbjct: 60 YAIG----YGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YES 113
Query: 265 VTCKPRFVAP 274
+P P
Sbjct: 114 AVTRPHTSGP 123
Score = 70.2 bits (172), Expect = 4e-14
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 9/128 (7%)
Query: 565 NSIGE---SDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD 621
+S +D L +E P+ P V+ + ++W PP N +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNI-VVRG 59
Query: 622 YIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIM 681
Y I ++V + I +L Y + A N G P + +
Sbjct: 60 YAIGYGI--GSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YESAV 115
Query: 682 CKQRFLAP 689
+ P
Sbjct: 116 TRPHTSGP 123
Score = 65.2 bits (159), Expect = 2e-12
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 5/120 (4%)
Query: 1504 NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYN 1563
+ +T + P P +LH S+ + WTPP + + Y + +
Sbjct: 11 DWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPENQNI-VVRGYAIGYGIGS 68
Query: 1564 STVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
T Y + + NL S Y + A N G P + + P +
Sbjct: 69 PHAQTIKVDYKQRYYT-IENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGPSS 125
Score = 65.2 bits (159), Expect = 2e-12
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 1017 GYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 1076
P++ L+ T P P L V S +SW PP + +
Sbjct: 5 SSGPATDWLSAETF--ESDLDETRVPEVPSS-LHVRP-LVTSIVVSWTPPENQNI-VVRG 59
Query: 1077 YVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITA 1136
Y + Y + + + Y + L+ + Y ++A N G PL S
Sbjct: 60 YAIG-YGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY--ESAVT 116
Query: 1137 KFPFTVPDPPG 1147
+ P
Sbjct: 117 R---PHTSGPS 124
Score = 53.2 bits (128), Expect = 3e-08
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P P +S + W P + + Y + D Y
Sbjct: 28 PEVPSSLH--VRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDYKQRYYT 84
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 174
ENL Y +KA N +GE +PL + P
Sbjct: 85 IENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGP 123
Score = 50.9 bits (122), Expect = 2e-07
Identities = 23/152 (15%), Positives = 39/152 (25%), Gaps = 62/152 (40%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P+ P + V R S+ +SW PP++ ++GY + ++ V
Sbjct: 28 PEVPSSLHV-RPLVTSIVVSWTPPENQNIV-VRGYAIGYGIGSPHA---QTIKVDYKQRY 82
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y IE
Sbjct: 83 ----------------------------YTIE---------------------------N 87
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTKEPVVAK 965
L + Y ++A N G P+ E V +
Sbjct: 88 LDPSSHYVITLKAFNNVGEGIPLY--ESAVTR 117
Score = 49.8 bits (119), Expect = 5e-07
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 485 PDKPSPPEGPLEVS-NVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
D+ PE P + S +SW P + + Y I S +
Sbjct: 22 LDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDYKQ 80
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+Y + L Y+ +KA N++GE L + T
Sbjct: 81 RYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVT 116
Score = 39.7 bits (93), Expect = 0.001
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 1603 SKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1658
+ VP P + V SI + W+ P + ++ Y +
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLH-VRPLVTSIVVSWTPPENQNI-VVRGYAIG 63
Score = 37.4 bits (87), Expect = 0.009
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 1120 NQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD--TNNATLMWDRPRTDGGSKIQGY 1177
+ + ++ T + P P + + + W P ++GY
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGY 60
Query: 1178 KVEFR 1182
+ +
Sbjct: 61 AIGYG 65
Score = 36.7 bits (85), Expect = 0.019
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
V Y + + K Y + +L Y +KA N G P S
Sbjct: 57 VRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES 113
Score = 33.2 bits (76), Expect = 0.34
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 429 YIIEMAEYGLDNWK----TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
Y I YG+ + V + ++T++ L YV ++ N G PL
Sbjct: 60 YAIG---YGIGSPHAQTIKVDY--KQRYYTIENLDPSSHYVITLKAFNNVGEGIPL 110
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S
de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 81.3 bits (201), Expect = 2e-18
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1327 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHT 1385
D P +V +T S+T+SW PP A I GY + G +VP + T
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ L+ G EY V A+ + S P
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPP 83
Score = 80.9 bits (200), Expect = 3e-18
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 589 DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK 648
DAP V + + + ++W PP + IT Y I P L VP + T V
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
I LT G EY V A+ + S P +
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 77.9 bits (192), Expect = 3e-17
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 175 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 233
D P VT+ + + WTPP + I+ Y I P GP K VP + T+ +
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 271
+ L G EY V A+ P + T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGTQ-TTGGHHH 95
Score = 74.8 bits (184), Expect = 4e-16
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 1227 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNFT 1285
DAP+ +VT + +S++++W PP+ ITGY + G + P ++ + T
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPSA----TITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+ L G +Y V A+ + P T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 67.1 bits (164), Expect = 2e-13
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 75 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 134
P L+ +N+T +S + W P I Y + V + T
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPPSAT----ITGYRITYTPSNGPGEPKELTVPPSSTSV 57
Query: 135 --ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 171
L G +Y V A+ ES PLV + T
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGGHHH 95
Score = 65.9 bits (161), Expect = 6e-13
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA-- 1100
P L V+++T S ++SW PP + IT Y + Y + G V +
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPP----SATITGYRIT-YTPSNGPGEPKELTVPPSSTS 56
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1140
+ GL +Y V A S PL T
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPLVG-TQTTGGHHH 95
Score = 65.1 bits (159), Expect = 1e-12
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSY 1573
+LD P +L S+T+ WTPP + IT Y + N K V
Sbjct: 1 MLD---APTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPS 53
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
T+ V + L G Y V A S P
Sbjct: 54 STS--VTITGLTPGVEYVVSVYALKDNQESPPL 84
Score = 64.4 bits (157), Expect = 2e-12
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 489 SPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---LF 545
P L+V+NVT S +SW P A I Y I + +TV
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKE-LTVPPSSTS 56
Query: 546 YDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ L EY+ V A+ ES L T+TT
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGH 93
Score = 52.4 bits (126), Expect = 3e-08
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY I ++G G + V P T+ L G Y V A S P+ +
Sbjct: 31 GYRITYTP-SNGPGEPKELT-VPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQ 88
Score = 47.0 bits (112), Expect = 2e-06
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 815 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG-DWVDANSVPVPNPVHT 873
D P +V +T S+T+SW PP A I GY + G +VP + T
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 874 L 874
+
Sbjct: 59 I 59
Score = 37.0 bits (86), Expect = 0.007
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
+ Y I TVP T+ GLT G +YV + S PL
Sbjct: 30 TGYRITYTPSNGPGEPKELTVPP--SSTSVTITGLTPGVEYVVSVYALKDNQESPPL 84
Score = 37.0 bits (86), Expect = 0.007
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 1622 GAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
AP + + T+ SI++ W+ P + I Y + + K TS
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTS 56
Score = 36.6 bits (85), Expect = 0.009
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ + L G +Y V A S P +
Sbjct: 56 SVTITGLTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 33.2 bits (76), Expect = 0.16
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 1144 DPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
D P Q+ + + T+ W P + I GY++ + + +
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGE 44
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin
signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Length = 656
Score = 90.7 bits (225), Expect = 2e-18
Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 32/270 (11%)
Query: 1633 TEDSISLVW--SKPRHDGGSPIQRYIVEKRLISDDKWIKASM----AHIPDTSLKYTSSV 1686
+ S + K I + ++ + S A I D YT
Sbjct: 322 NGATQSFIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPS 381
Query: 1687 YDHYDI-------LEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKE 1730
Y+I IG G FG VH+ N + V S ++ ++
Sbjct: 382 TRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPEN----PAMAVAIKTCKNCTSDSVREK 437
Query: 1731 LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVIN 1790
++ E M Q HP ++ L ++ + I E + GEL + + + A +I
Sbjct: 438 FLQ-EALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKFSLDLASLIL 495
Query: 1791 YMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGT 1850
Y Q+ A+ ++ K +H D+ N++ + + VK+ DFGL+ ++ + K S G
Sbjct: 496 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDC--VKLGDFGLSRYMEDSTYYKASKGK 553
Query: 1851 --AEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
++ APE + +D+W GV +
Sbjct: 554 LPIKWMAPESINFRRFTSASDVWMFGVCMW 583
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 114
Score = 81.7 bits (202), Expect = 2e-18
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 1225 PPDAPSQPEVTGY--SPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRA---NNYPT 1279
P AP V P +V ++W PP G IT Y + +
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISG 66
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
L + DL Y FR+ A N G G S P
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILF 103
Score = 73.6 bits (181), Expect = 2e-15
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 588 PDAPEKPTV--KDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMN--ALEVPAN 643
AP+ TV ++ V ++W+PPL G IT YI+ N + + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
+ +I DL Y FR+ A N G SD
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 72.8 bits (179), Expect = 4e-15
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 1326 PDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDA---NSVPVP 1380
P+ V +V +SW+PP G +I YI+ +D ++
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 1381 NPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
H + +L+ Y FR+ A N G G S P++
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFR 104
Score = 61.3 bits (149), Expect = 4e-11
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 174 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWE---KACIVPAN 228
P TV V + W PP + G I+ YI+ + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
+ DL Y FR+ A N G G S P+ +
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPL---SDPILFR 104
Score = 58.2 bits (141), Expect = 4e-10
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 1042 PSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
S P+ + + P + +SW+PPL+ G IT Y++ S
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 1101 ---YDVFGLETNRQYRFRVRAENQYGVSEP 1127
+ + L + Y FR++A N GV
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97
Score = 57.8 bits (140), Expect = 5e-10
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 1521 PHPPENL--HADEFAGDSLTLYWTPPRDNGGSEITNYVVE---KKDYNSTVWTKVSSYVT 1575
P++L E ++ + W PP + G +IT Y++ K+ W +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
++ +L + + Y FR+ A N G+
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97
Score = 50.1 bits (120), Expect = 3e-07
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 74 PSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVE---KMDMETGRWVPMGDVSG 129
S P+ + + + W+ P + G I Y++ ++ W+ +SG
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISG 66
Query: 130 TYTRA--ENLIEGHDYNFRVKAVNKIGES 156
+L Y FR++A N G
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVG 95
Score = 46.6 bits (111), Expect = 4e-06
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 488 PSPPEGP-LEVSNVTKESCKLSWRVPVDDGGAPILHYIIE---KMDISRGTWSDAGMTVS 543
S P+ + + +SW+ P++ G I YI+ +I W T+S
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIM--ETIS 65
Query: 544 ---LFYDVPRLIHRKEYLFRVKAVNSIGES 570
L + + L Y FR++A NS G
Sbjct: 66 GDRLTHQIMDLNLDTMYYFRIQARNSKGVG 95
Score = 43.5 bits (103), Expect = 5e-05
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 814 PDPPEAPKV--DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 871
P+ V +V +SW+PP G +I YI+ +D + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 872 HTLLSIGYL 880
I L
Sbjct: 68 RLTHQIMDL 76
Score = 40.4 bits (95), Expect = 7e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPI- 956
Y++ + + +S + L T Y FR++A N +G LS+PI
Sbjct: 43 AYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPIL 102
Query: 957 --TTKEPV 962
T K
Sbjct: 103 FRTLKVSG 110
Score = 36.6 bits (85), Expect = 0.017
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 1621 PGAPGAPK--GVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
AP + ++ + W P G I YI+ L + M I
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 1679 SLKYT 1683
L +
Sbjct: 68 RLTHQ 72
Score = 34.3 bits (79), Expect = 0.085
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 429 YIIEMAEYG---LDNWK--TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
YI+ +D+W T+ G + + L Y FRI+ N G DP+
Sbjct: 44 YILFYTLDKNIPIDDWIMETISG--DRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPI 101
Query: 484 F---PDKPSPPEG 493
P G
Sbjct: 102 LFRTLKVSGPSSG 114
Score = 33.1 bits (76), Expect = 0.22
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
T+ + L Y FR++A+N+ G S
Sbjct: 70 THQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 32.7 bits (75), Expect = 0.34
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 1143 PDPPGQPQIVDWDTNNATLM--WDRPRTDGGSKIQGYKVEFRSTRTATD 1189
P ++ + ++ W P G KI Y + + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPI 56
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase;
HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7
Length = 535
Score = 89.9 bits (223), Expect = 3e-18
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 24/232 (10%)
Query: 1650 SPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRE 1709
+ + + ++ D W IP SL+ + ++G G FG V
Sbjct: 245 TVCPTSKPQTQGLAKDAWE------IPRESLR----------LEVKLGQGCFGEVWMGTW 288
Query: 1710 RKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSG 1769
T + A K + + + +E +M +L H KL+ L+ ++ + + E++S
Sbjct: 289 NGTTRV-AIKTLKPGTMSPEAFL-QEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSK 345
Query: 1770 GELFERITAPDYK-MSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVK 1828
G L + + K + ++++ Q+ + ++ N +H D++ NI+ K
Sbjct: 346 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLV--CK 403
Query: 1829 MIDFGLATKLDPNEVVKISTGT--AEFAAPEIVEREPVGFYTDMWAVGVLAY 1878
+ DFGLA ++ NE ++ APE +D+W+ G+L
Sbjct: 404 VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT 455
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1 interferon,
soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Length = 329
Score = 87.6 bits (216), Expect = 3e-18
Identities = 36/291 (12%), Positives = 80/291 (27%), Gaps = 52/291 (17%)
Query: 2023 YEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDR--- 2079
G+ C I + + + + + R + L
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDS 101
Query: 2080 -------------FSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTL 2125
+Q + P + + ++ + C ++ A +
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161
Query: 2126 TWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQR 2185
TW+ NNQEL +Y+ +I+ ++ED G Y + + ++ +
Sbjct: 162 TWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218
Query: 2186 K--------YDLPVIHYKNH------------------RRANKYDVIWLHNNKEIKPSND 2219
+ +I + + W + + I +
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 2220 FAYSSVA-----HVHTLKIAEIFPEDSG-VYTCEAFNDEGESFSSCTLLVQ 2264
YS + TL + E G YTC N + + T++++
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 67.2 bits (163), Expect = 1e-11
Identities = 24/186 (12%), Positives = 48/186 (25%), Gaps = 33/186 (17%)
Query: 2106 YEGQSVKFTCRVIAIAT---------PTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRT 2156
G+ C I + + W + + + I
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL-----NRRVKNGDLWIANY 96
Query: 2157 KMEDRGE-YIIRAENHYGYREE-VVFLNVQRK-------YDLPV-------IHYKNHRRA 2200
D Y+ G + +V ++++ Y+L ++
Sbjct: 97 TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAK 156
Query: 2201 NKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCT 2260
+ ++ W NN+E+ L I EDSG Y C D+ +
Sbjct: 157 HYNNITWYKNNQELIIDGTK---YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIV 213
Query: 2261 LLVQVS 2266
+
Sbjct: 214 VSRCKI 219
Score = 62.5 bits (151), Expect = 5e-10
Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 47/214 (21%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ P + + ++ + C ++ A +TW+ NNQEL D
Sbjct: 126 RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII----------DGT 175
Query: 2067 TFYSSLRKLQIDRFSIQDT--------------------------SFDRRQAAPRFVIKP 2100
+ S + L I ++D+ + Q +I
Sbjct: 176 KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILD 235
Query: 2101 QSAFCYEGQSVKFTCRVIAIATP----TLTWFHNNQEL-----KQSVKFMKRYAGDDYTF 2151
G+ TC ++ + + W + + + + T
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295
Query: 2152 VINRTKMEDRGE-YIIRAENHYGYREEVVFLNVQ 2184
E G Y R N+Y + + ++
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 52.1 bits (124), Expect = 1e-06
Identities = 28/176 (15%), Positives = 40/176 (22%), Gaps = 48/176 (27%)
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVA 2226
N E D + H N V W K +P N +
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYND---KDNVVNWEKIGKTRRPLNRRVKNG-- 89
Query: 2227 HVHTLKIAEIFPEDSG-VYTCEAFNDEGESFSSCTLLV---------------------- 2263
L IA DS Y C G+
Sbjct: 90 ---DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 2264 -------------QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
++WYK+ + D Y + I + L+D G+Y
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKY----SQSGQNLIIHNPELEDSGRYD 198
Score = 51.0 bits (121), Expect = 3e-06
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 256 GEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVTWTIDGKEL 314
G+ + P ++ +++ + + +TW + +EL
Sbjct: 114 GDCVQGIVRSH---IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL 170
Query: 315 KTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETIS 369
D + + + I N + DSG Y + R + V+ + ++
Sbjct: 171 IIDGTKYSQSG-QNLII---HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILT 221
Score = 47.1 bits (111), Expect = 4e-05
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 10/117 (8%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPEVT 721
+ G I P ++ +++ + + +T
Sbjct: 108 TVTTKNGDCVQGIVRSHIRKP-----PSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162
Query: 722 WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
W + +EL D + + + I N + DSG Y + R + +
Sbjct: 163 WYKNNQELIIDGTKYSQSG-QNLII---HNPELEDSGRYDCYVHYDDVRIKNDIVVS 215
Score = 43.3 bits (101), Expect = 6e-04
Identities = 13/134 (9%), Positives = 37/134 (27%), Gaps = 13/134 (9%)
Query: 1390 SEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVP 1449
Y + G+ + + + P+ ++ ++
Sbjct: 100 DSHRRYL--CTVTTKNGDCV--QGIVRSHIRKPPSCIPET----YELGTHDKYGIDLYCG 151
Query: 1450 FM-AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF 1508
+ A W+ N+ + T+ + + +L++ N + D G+Y +
Sbjct: 152 ILYAKHYNNITWYKNNQELIIDGTKY----SQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207
Query: 1509 DTATLHVRVLDRPH 1522
+ V
Sbjct: 208 IKNDIVVSRCKILT 221
Score = 41.4 bits (96), Expect = 0.002
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 10/130 (7%)
Query: 1432 GVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID---DSDTRVHKQLTMNSASLVVK 1488
G + GE FS P + + + D++++ TR + + L +
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIA 94
Query: 1489 NSQRSD-GGQYRLQLKNPAGF-DTATLHVRVLDRP---HPPENLHADEFAGDSLTLYWTP 1543
N +D +Y + G + + P L + + LY
Sbjct: 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD--KYGIDLYCGI 152
Query: 1544 PRDNGGSEIT 1553
+ IT
Sbjct: 153 LYAKHYNNIT 162
Score = 31.0 bits (69), Expect = 5.3
Identities = 7/82 (8%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATP----TLTWFHNNQELKQSVKFMKRYA 2062
Q +I G+ TC ++ + + W + + + +
Sbjct: 225 SQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSIL 284
Query: 2063 GDDYTFYSSLRKLQIDRFSIQD 2084
+ L + + +
Sbjct: 285 TSSGGITEAT--LYFENVTEEY 304
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 83.4 bits (206), Expect = 3e-18
Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 37/194 (19%)
Query: 2089 RRQAAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYA 2145
R + P+ V+ PQ E SV C+ + WFHN +
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------ 54
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN--------- 2196
++ I+ + D GEY + + V L V + L
Sbjct: 55 ----SYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHL 108
Query: 2197 --HRRANKY--DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
H N V +L N K+ K + H I + +DSG Y C
Sbjct: 109 RCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGS 160
Query: 2253 GESFSSCTLLVQVS 2266
+ SS T+ + ++
Sbjct: 161 K-NVSSETVNITIT 173
Score = 67.2 bits (164), Expect = 1e-12
Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 20/186 (10%)
Query: 2006 RRQAAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVK--FMKR 2060
R + P+ V+ PQ E SV C+ + WFHN + F+
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA 60
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIA- 2119
+D Y Q + ++ D + P+ F E + C
Sbjct: 61 ATVNDSGEYRC----QTNLSTLSDPVQLEVHIGWLLLQAPRWVF-KEEDPIHLRCHSWKN 115
Query: 2120 IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN-HYGYREEV 2178
A +T+ N ++ K + F I + ++D G Y R E
Sbjct: 116 TALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSET 167
Query: 2179 VFLNVQ 2184
V + +
Sbjct: 168 VNITIT 173
Score = 39.5 bits (92), Expect = 0.004
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 16/122 (13%)
Query: 1419 VEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQ 1477
E+ P K V+ L + +V + ++ P+ + WF N+
Sbjct: 2 TEDLP-KAVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE-----------SL 48
Query: 1478 LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSL 1537
++ ++S + + +D G+YR Q D L V + E D +
Sbjct: 49 ISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE--EDPI 106
Query: 1538 TL 1539
L
Sbjct: 107 HL 108
Score = 37.9 bits (88), Expect = 0.012
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE- 357
+VT+ +GK+ K + I DSG+Y S
Sbjct: 115 NTALHKVTYLQNGKDRKY-FHHNSDFHIP--------KATLKDSGSYFCRGLVGSKNVSS 165
Query: 358 GSFTVTVLE 366
+ +T+ +
Sbjct: 166 ETVNITITQ 174
Score = 33.7 bits (77), Expect = 0.37
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 770
+VT+ +GK+ K + I DSG+Y S
Sbjct: 115 NTALHKVTYLQNGKDRKY-FHHNSDFHIP--------KATLKDSGSYFCRGLVGSKN 162
Score = 33.3 bits (76), Expect = 0.50
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
+ +DS C+ + W+ + + +S ++Y
Sbjct: 17 YSVLEKDSVTLKCQG--------AYSPEDNSTQWFHNESLISSQASSYF----------- 57
Query: 2294 ILSTTLDDVGQYSAQMGGII--AAFSLNV 2320
I + T++D G+Y Q L V
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSDPVQLEV 86
Score = 31.0 bits (70), Expect = 2.5
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 360
W + + + + + + +DSG Y + ++ D
Sbjct: 36 EDNSTQWFHNESLISSQASSYFIDAA-----------TVNDSGEYRCQTNLSTLSDPVQL 84
Query: 361 TVTVLETISKTNTTTISSKNMMYL 384
V + + + ++ ++L
Sbjct: 85 EVHIGWLLLQAPRWVFKEEDPIHL 108
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 81.3 bits (201), Expect = 3e-18
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 6/108 (5%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
P + S++L+W P G I Y + E+ ++ +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNT 64
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ LR G Y +V A AG GK S Q P +
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCF-----QTLTDSGPSS 107
Score = 73.6 bits (181), Expect = 1e-15
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P T S+TLSW P+ G I Y ++ +K + +++
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ L G Y +V A AG GK SG + + +
Sbjct: 67 IDGLRPGMVYVVQVRARTVAGY---GKFSGKMCFQTLTDSG 104
Score = 66.3 bits (162), Expect = 5e-13
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
P + L+W P G I DY I+ EK + + N+ +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEF-NSSMARSQTN 63
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
+I L G Y +V A AG + S
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 63.6 bits (155), Expect = 5e-12
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
PS + T S +LSW P G I +Y + YE ++ + ++
Sbjct: 6 SGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTN 63
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGV---SEPLE 1129
+ GL Y +VRA G S +
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 96
Score = 62.1 bits (151), Expect = 1e-11
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P + L W P++ G I Y I K + + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPS 259
+ L+ G Y +V A G G+ S
Sbjct: 67 IDGLRPGMVYVVQVRARTVAGYGKFS 92
Score = 59.4 bits (144), Expect = 1e-10
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P +H S+TL W P G I +Y + + + + T
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNT 64
Query: 1579 VRVRNLAIGSTYEFRVMAENQYG 1601
R+ L G Y +V A G
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAG 87
Score = 51.7 bits (124), Expect = 6e-08
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS-GTYT 132
PS + + T S L W P G IL Y + + E + S
Sbjct: 8 PSTVPI-MHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Query: 133 RAENLIEGHDYNFRVKAVNKIG 154
R + L G Y +V+A G
Sbjct: 66 RIDGLRPGMVYVVQVRARTVAG 87
Score = 47.1 bits (112), Expect = 3e-06
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGM-TVS 543
PS + + T S LSW P G IL Y I + ++ + + +
Sbjct: 5 SSGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQT 62
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIG 568
+ L Y+ +V+A G
Sbjct: 63 NTARIDGLRPGMVYVVQVRARTVAG 87
Score = 45.9 bits (109), Expect = 7e-06
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P T S+TLSW P+ G I Y ++ +K + +++
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 874 L 874
+
Sbjct: 67 I 67
Score = 44.4 bits (105), Expect = 3e-05
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWI 1668
P V +T SI+L W +P G I Y + +++
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFN 54
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPI- 956
Y I + H + + A + L G Y +VRA + G S +
Sbjct: 40 DYEIRYYEKEHNE---FNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 96
Query: 957 -TTKEPV 962
T
Sbjct: 97 FQTLTDS 103
Score = 35.5 bits (82), Expect = 0.032
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
+ P V + TL W +P G I Y++ +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEH 50
Score = 34.7 bits (80), Expect = 0.056
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1897 KDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ T + L G Y +V+A+ AG+ K S
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 34.3 bits (79), Expect = 0.094
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF--PD 486
Y I E + + + + GL G YV ++R + G + +
Sbjct: 41 YEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100
Query: 487 KPSPPE 492
S P
Sbjct: 101 TDSGPS 106
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis,
ATP-binding, developmental protein, differentiation,
glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 81.2 bits (201), Expect = 3e-18
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ AP ++ G+S++ +C P + WF +N+ L + +
Sbjct: 8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRN 65
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I R + ED G Y +A + G + F ++
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 75.8 bits (187), Expect = 3e-16
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
++W +N+ + + L I + ED G+YTC+A + G + ++
Sbjct: 41 QIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
Query: 2264 QVS 2266
+ +
Sbjct: 99 EGA 101
Score = 61.6 bits (150), Expect = 2e-11
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
VAP I L++ G+ + V G PPP++ W D + L DS TI
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTN 372
++ D G Y + + G + + KTN
Sbjct: 69 ---RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 61.2 bits (149), Expect = 3e-11
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ AP ++ G+S++ +C P + WF +N+ L +
Sbjct: 8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED---------SGIV 58
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
R L I R +D
Sbjct: 59 LKDGNRNLTIRRVRKEDE 76
Score = 53.9 bits (130), Expect = 1e-08
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
AP I L++ G+ + V G PPP++ W D + L DS TI
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI- 68
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
++ D G Y + + G + +
Sbjct: 69 --RRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 53.9 bits (130), Expect = 1e-08
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ T GE + P P WF ++ + + L + +L ++ ++
Sbjct: 18 ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS---GIVLKDGNRNLTIRRVRKE 74
Query: 1494 DGGQYRLQLKNPAGFD--TATLHVRVLDRPHPPE 1525
D G Y Q + G A + E
Sbjct: 75 DEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108
Score = 37.7 bits (88), Expect = 0.006
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
Q+ W+KD + +D + + I +D G Y+
Sbjct: 41 QIMWFKDNETLVEDS-GIVLKDGNRN--LTIRRVRKEDEGLYT 80
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 86.8 bits (214), Expect = 5e-18
Identities = 34/259 (13%), Positives = 63/259 (24%), Gaps = 22/259 (8%)
Query: 1434 RDITVKAGEDFSIHVPFM-AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR 1492
+T G+ ++ P + W +R L++++ Q
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA----GMGRRLLLRSVQL 69
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEI 1552
D G Y AG T+H+ V P P+ + ++ W P S
Sbjct: 70 HDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRST--PSLT 124
Query: 1553 TNYVV----EKKDYNSTVWTKVSSYVTTPFVRV---RNLAIGSTYEFRVMAENQYGLSKP 1605
T V+ + + S Y + + G
Sbjct: 125 TKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFS 184
Query: 1606 ALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRH-DGGSPIQRYIVEKRLISD 1664
D P V +S+ W P + R+ + R
Sbjct: 185 KTQTFQGCGILQPDPPANITV-TAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS 243
Query: 1665 DKWIKASMAHIPDTSLKYT 1683
+ + + D
Sbjct: 244 KTF---TTWMVKDLQHHCV 259
Score = 81.8 bits (201), Expect = 2e-16
Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 18/217 (8%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLR-----ANNYP 1278
PP+ P S+V W P + T + R+
Sbjct: 93 VPPEEPQLSCFRKSPLSNVVCEWGPRSTPS--LTTKAVLLVRKFQNSPAEDFQEPCQYSQ 150
Query: 1279 TTNLN--FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDR 1336
+ + Y + + G K SK +PDPP V
Sbjct: 151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGS-KFSKTQTFQG--CGILQPDPPANITVTA 207
Query: 1337 ITKDS--VTLSWRPPKH-DGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGE 1393
+ ++ ++++W+ P + + ++ R + V + + G
Sbjct: 208 VARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGL 267
Query: 1394 EYTFRVIAVNEAGNSEPGKQSGPVIV---EEQPNKPV 1427
+ ++ A E G E + S + E + P
Sbjct: 268 RHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPA 304
Score = 80.3 bits (197), Expect = 7e-16
Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 17/207 (8%)
Query: 483 LFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAP---ILHYIIEKMDISRGTWSDAG 539
L D P + W P +L + +
Sbjct: 89 LLVDVPPEEPQLSCFRKSPLSNVVCEWG-PRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQ 147
Query: 540 MTV-----SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKP 594
+ S VP Y+ + +S+G + T +PD P
Sbjct: 148 YSQESQKFSCQLAVP-EGDSSFYIVSMCVASSVGSK---FSKTQTFQGCGILQPDPPANI 203
Query: 595 TVKDWGED--FVDLAWKPPLN-DGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPD 651
TV + ++ + W+ P + + + ++ + + + + V + I D
Sbjct: 204 TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTF-TTWMVKDLQHHCVIHD 262
Query: 652 LTKGQEYEFRVIAVNEAGPSEPSDASD 678
G + ++ A E G E S+ S
Sbjct: 263 AWSGLRHVVQLRAQEEFGQGEWSEWSP 289
Score = 76.1 bits (186), Expect = 2e-14
Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 37/327 (11%)
Query: 1054 ITPESCSLSWKPP---LDDGGSPITNY--VVEKYESATGFWSKLSSFVRSPAYDVFGLET 1108
+ P C G +T VE ++AT W S G+
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60
Query: 1109 NRQYR-FRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLM--WDR 1165
R ++ Y V PP +PQ+ + + + +
Sbjct: 61 RLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWG 116
Query: 1166 PRTDGGSKIQGYKVEFRSTRT----------ATDCGLGYQQCHADVGQTP---HGWWLQD 1212
PR+ + + R + C V + + +
Sbjct: 117 PRSTPSLTTK-AVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV 175
Query: 1213 SRIQGRIQSP--------FDPPDAPSQPEVT--GYSPSSVSLAWNPPAN-HGGRPITGYY 1261
+ G S PD P+ VT +P +S+ W P + + +
Sbjct: 176 ASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFE 235
Query: 1262 VEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKE 1321
+ R + + +HD G ++ ++ A E G G+ S+ +
Sbjct: 236 LRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP 295
Query: 1322 QKRKPDPPEAPKVDRITKDSVTLSWRP 1348
PP +V + T
Sbjct: 296 WTESRSPPAENEVSTPMQALTTNKDDD 322
Score = 76.1 bits (186), Expect = 2e-14
Identities = 28/213 (13%), Positives = 53/213 (24%), Gaps = 10/213 (4%)
Query: 71 LHIPSPPEGP--LKPSNITKSSCNLEWRAPRDDGGTD--ILHYVVEKMDMETGRWVP--- 123
L + PPE P S+ EW T +L + P
Sbjct: 89 LLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQY 148
Query: 124 -MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV 182
+ A + Y + + +G P T
Sbjct: 149 SQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANI-TVTA 207
Query: 183 TDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGE 241
+ + W P + ++ + + + +V + D G
Sbjct: 208 VARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGL 267
Query: 242 EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
+ ++ A + G GE S+ S P +
Sbjct: 268 RHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESR 300
Score = 76.1 bits (186), Expect = 2e-14
Identities = 32/352 (9%), Positives = 84/352 (23%), Gaps = 47/352 (13%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 328
P + + G +V + E V W + + R
Sbjct: 5 RCPAQEVARGVLTSLPGD--SVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG--- 59
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERE 388
++ + + DSG Y +GR G+ + V + + + +
Sbjct: 60 RRLLLR-SVQLHDSGNYSC---YRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCE- 114
Query: 389 LLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFC 448
W + + D +
Sbjct: 115 -------------WGPRSTPSLTTKAV-----------LLVRKFQNSPAEDFQEPCQYSQ 150
Query: 449 PKEFFTV---KGLTEGKKYVFRIRTENMYGASE----PLDPLFPDKPSPPEGP-LEVSNV 500
+ F+ + Y+ + + G+ +P PP +
Sbjct: 151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVAR 210
Query: 501 TKESCKLSWRVPVD-DGGAPILHYIIEKMDISRGTWSDAGMT-VSLFYDVPRLIHRKEYL 558
++W+ P + L + + T++ + + + ++
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHV 270
Query: 559 FRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKP 610
+++A G+ + E + + + P + V +
Sbjct: 271 VQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDDD 322
Score = 61.8 bits (149), Expect = 8e-10
Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 6/150 (4%)
Query: 1499 RLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDS--LTLYWTPPRD-NGGSEI 1552
+ + + G T T + +P PP N+ A + L++ W P N
Sbjct: 172 SMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231
Query: 1553 TNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPI 1612
+ + + S +T + + G + ++ A+ ++G + +
Sbjct: 232 LRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291
Query: 1613 KAKHPFDVPGAPGAPKGVDSTEDSISLVWS 1642
+ P + + +
Sbjct: 292 MGTPWTESRSPPAENEVSTPMQALTTNKDD 321
Score = 58.7 bits (141), Expect = 8e-09
Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 2/127 (1%)
Query: 1041 KPSPPQGP-LDVSDITPESCSLSWKPPLD-DGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
+P PP + P S++W+ P + + + + ++
Sbjct: 196 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 255
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNN 1158
+ + ++ ++RA+ ++G E E PP + ++
Sbjct: 256 HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQAL 315
Query: 1159 ATLMWDR 1165
T D
Sbjct: 316 TTNKDDD 322
Score = 44.9 bits (105), Expect = 2e-04
Identities = 43/368 (11%), Positives = 89/368 (24%), Gaps = 77/368 (20%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH 744
P + + G +V + E V W + + R
Sbjct: 6 CPAQEVARGVLTSLPGD--SVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG---R 60
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLP 804
++ + + DSG Y +GR G+ ++ D
Sbjct: 61 RLLLR-SVQLHDSGNYSC---YRAGRPAGTVHLLVDVP---------------------- 94
Query: 805 IMEAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS 864
P+ P+ + +V W P + ++ RK +
Sbjct: 95 ---------PEEPQLSCFRKSPLSNVVCEWGPRST--PSLTTKAVLLVRKFQNSPAEDFQ 143
Query: 865 VPVPNPVHTLLSIGYLSQFLAEEKKHGKLLLAKVENG-------YVIEKRDLTHGGGWVP 917
P + L+ + + + G L
Sbjct: 144 EPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANI 203
Query: 918 AVNHVSPYDHHATV--------PRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYG 969
V V+ +V +E R RAE S+ TT ++
Sbjct: 204 TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER----SKTFTTWMVKDLQHHCV 259
Query: 970 -KELDKWTNYDVLKEICQIH-LPQIVDGK------PVIAKSPFDPPDAPSQPEVTGYSPS 1021
+ + V Q+ + G+ + + P++ EV+ +
Sbjct: 260 IHDAWSGLRHVV-----QLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQA 314
Query: 1022 SVSLAWNP 1029
+ +
Sbjct: 315 LTTNKDDD 322
Score = 40.2 bits (93), Expect = 0.006
Identities = 26/178 (14%), Positives = 45/178 (25%), Gaps = 17/178 (9%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
P + G SV TC + T+ W R+AG
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---PSRWAGMGRR 61
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHN 2210
++ ++ D G Y V L V + P + + W
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPAG---TVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP- 117
Query: 2211 NKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWY 2268
+ V ++ + P + C+ + + SC L V
Sbjct: 118 -------RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQK--FSCQLAVPEGDS 166
Score = 36.4 bits (83), Expect = 0.10
Identities = 9/93 (9%), Positives = 21/93 (22%), Gaps = 6/93 (6%)
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKI-----PDLTKGQEY 658
V W P + ++ +K + +P ++ K Y
Sbjct: 111 VVCEWGPR-STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY 169
Query: 659 EFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKI 691
+ + G + + P
Sbjct: 170 IVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN 202
Score = 36.4 bits (83), Expect = 0.11
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 10/124 (8%)
Query: 159 LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP 218
+ P P+ P +V EW P ++ +K + P
Sbjct: 83 PAGTVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRS-TPSLTTKAVLLVRKFQNSP 138
Query: 219 WE------KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 272
E + + + Y + + G + +
Sbjct: 139 AEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPD 198
Query: 273 APKI 276
P
Sbjct: 199 PPAN 202
Score = 33.7 bits (76), Expect = 0.71
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPS--------STSKERPKFPLHSWLTGDHRNRT 1951
++H G + +++A+ G + S + E P + ++ + T
Sbjct: 257 HCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALT 316
Query: 1952 NSINQKNLI 1960
+ + N++
Sbjct: 317 TNKDDDNIL 325
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 86.7 bits (215), Expect = 6e-18
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 19/183 (10%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
V ++ + ++IG G FG + + T A K + E QL
Sbjct: 7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKL--EPMKSRAPQLHLEYRFYKQLGSG 64
Query: 1746 KLI-NLHDAFEDDDEMVLIFEFL--SGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
I ++ ++ E L S +LF+ D S V+ Q+ ++++
Sbjct: 65 DGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDL---CDRTFSLKTVLMIAIQLISRMEYV 121
Query: 1803 HEKNIIHLDVKPENIM---CQTRNSTNVKMIDFGLATK-LDPNEVVKIS-------TGTA 1851
H KN+I+ DVKPEN + + + +IDF LA + +DP I TGTA
Sbjct: 122 HSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTA 181
Query: 1852 EFA 1854
+
Sbjct: 182 RYM 184
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 80.2 bits (198), Expect = 8e-18
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
PP ++ D+ + W ++ V G P
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+G LS YT RV + G S +G V ++ P
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSST--LTGRVTTKKAP 99
Score = 72.8 bits (179), Expect = 3e-15
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P +D D + W P+ + G P N T+
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
+ L Y RV + GG
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 69.8 bits (171), Expect = 3e-14
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + +PP+ L SD++ ++ + W+ P+ V S G + +
Sbjct: 1 GSSGSSGLAPPRH-LGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEA 55
Query: 1095 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
+ + + L ++ Y RV G S L T K P P P
Sbjct: 56 PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLT-GRVTTKK----APSPSSGP 105
Score = 69.8 bits (171), Expect = 3e-14
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 9/108 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
P + S + + W RP+ V G P +
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSA 62
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ L Y RV + G T V K+ P P P
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGGSSTL--TGRVTTKKA---PSPSSGP 105
Score = 68.2 bits (167), Expect = 1e-13
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P D D + W+ P+ + + E P N T
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQ-TEAPGNATSA 62
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ L+ Y RV + G S
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92
Score = 62.1 bits (151), Expect = 1e-11
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
PP +L + + D+ ++W + V + +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 1581 VRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L+ +TY RV G S
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSSTL 89
Score = 60.5 bits (147), Expect = 6e-11
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P L S+++ + + W + V + E G + G T
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSE-GGHSGQTEAPGNATS 61
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
A L Y RV + G S L + T K P
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV-TTKKAP 99
Score = 59.0 bits (143), Expect = 2e-10
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWS----DAGMTVS 543
P L S+V+ ++ ++ W P+ + + G T
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAPR----PVRLVRVTYVSSEGGHSGQTEAPGNAT-- 60
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+ L Y RV + G S TL TT
Sbjct: 61 -SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTT 95
Score = 47.0 bits (112), Expect = 3e-06
Identities = 19/146 (13%), Positives = 28/146 (19%), Gaps = 61/146 (41%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP ++ D+ + W P PV
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWE------------------------------GAPRPV-- 35
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+ + GG A +
Sbjct: 36 --------------------------RLVRVTYV--SSEGGHSGQTE-APGNATSAMLGP 66
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTK 959
L TTY RV G S +T +
Sbjct: 67 LSSSTTYTVRVTCLYPGGGSSTLTGR 92
Score = 37.8 bits (88), Expect = 0.005
Identities = 9/72 (12%), Positives = 15/72 (20%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
+ + + L+ Y R+ G S L
Sbjct: 36 RLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTT 95
Query: 487 KPSPPEGPLEVS 498
K +P S
Sbjct: 96 KKAPSPSSGPSS 107
Score = 33.9 bits (78), Expect = 0.12
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ ++ L Y RV G S +
Sbjct: 61 SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92
Score = 32.0 bits (73), Expect = 0.49
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ PP D + A + W+ ++ +V + S+
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSS 45
Score = 30.5 bits (69), Expect = 1.8
Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 4/47 (8%)
Query: 1621 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
P D + D+ + W P++ V
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHS 50
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 85.0 bits (211), Expect = 1e-17
Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 47/233 (20%)
Query: 1663 SDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP 1722
S + I ++ + IG G FG VH+ N +
Sbjct: 6 STRDYE------IQRERIE----------LGRCIGEGQFGDVHQGIYMSPEN----PALA 45
Query: 1723 V---------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELF 1773
V S ++ ++ ++ E M Q HP ++ L ++ + I E + GEL
Sbjct: 46 VAIKTCKNCTSDSVREKFLQ-EALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELR 103
Query: 1774 ERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFG 1833
+ Y + A +I Y Q+ A+ ++ K +H D+ N++ + + VK+ DFG
Sbjct: 104 SFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDC--VKLGDFG 161
Query: 1834 LATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVLAY 1878
L+ ++ + K + APE I R +T D+W GV +
Sbjct: 162 LSRYMEDSTYYK--ASKGKLPIKWMAPESINFRR----FTSASDVWMFGVCMW 208
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 88.5 bits (219), Expect = 1e-17
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 1695 EIGTGAFGVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIMNQLHHPK 1746
E+G G FG V + R K I V + + E + +E IM+QL +P
Sbjct: 343 ELGCGNFGSVRQGVYRMRK-----KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY 397
Query: 1747 LINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
++ L + ++L+ E GG L + + ++ + V + QV +K++ EKN
Sbjct: 398 IVRLI-GVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN 456
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPEIVERE 1862
+H ++ N++ R+ K+ DFGL+ L ++ + ++ APE +
Sbjct: 457 FVHRNLAARNVLLVNRHY--AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF- 513
Query: 1863 PVGFYT---DMWAVGVLAY 1878
++ D+W+ GV +
Sbjct: 514 --RKFSSRSDVWSYGVTMW 530
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 79.4 bits (196), Expect = 1e-17
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPV 1383
+ D P +V +T + ++W PP + G+ + K +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+++GNL EY +I+ +S P
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNP 84
Score = 74.0 bits (182), Expect = 1e-15
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
DAP + VKD + + W PP P+ + + K P +++ ++
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQY 58
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
I +L EYE +I+ S P+ +
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSSNPAKET 88
Score = 70.5 bits (173), Expect = 2e-14
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLN 1283
DAPSQ EV + ++ + W PP+ P+ G+ + + +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPSQ----PVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+++ +L+ +YE +I+ P+K T
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKET 88
Score = 70.1 bits (172), Expect = 2e-14
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 173 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITA 231
R D P Q V D + W PP P+ + + K P + +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
S+ +LK EYE +I+ P+K +
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 66.6 bits (163), Expect = 3e-13
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
+ P ++V D+T + ++W PP P+ + + Y + + +
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELT-YGIKDVPGDRTTIDLTEDE 55
Query: 1101 --YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
Y + L+ + +Y + + S P T T +
Sbjct: 56 NQYSIGNLKPDTEYEVSLISRRGDMSSNPA----KETFT---TGLAAALEHH 100
Score = 62.8 bits (153), Expect = 7e-12
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 9/92 (9%)
Query: 1520 RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTT 1576
R P + + + + W PP + + + + ++
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
+ NL + YE +++ S PA
Sbjct: 58 --YSIGNLKPDTEYEVSLISRRGDMSSNPAKE 87
Score = 56.6 bits (137), Expect = 1e-09
Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P ++ ++T ++ + W P + + + + D++ +
Sbjct: 3 LDAPSQ-IEVKDVTDTTALITWMPPSQP----VDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
NL +Y + + S P ++ T
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAA 95
Score = 55.9 bits (135), Expect = 2e-09
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 20/113 (17%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLF- 545
+ P +EV +VT + ++W P P+ + + T+ L
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDR---TTIDLTE 53
Query: 546 ----YDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKP 594
Y + L EY + + S+ + T TT A +
Sbjct: 54 DENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT-------GLAAALEH 99
Score = 53.9 bits (130), Expect = 1e-08
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 60/146 (41%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
+ D P +V +T + ++W PP + G+ + K D ++ + +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPG-DRTTIDLTEDEN 56
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
Y I +L
Sbjct: 57 Q----------------------------YSIG--NLKPD-------------------- 66
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITT 958
T YE + + S P
Sbjct: 67 -----TEYEVSLISRRGDMSSNPAKE 87
Score = 38.5 bits (90), Expect = 0.003
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 4/69 (5%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGASEPLDPLF-- 484
+ + + +T E +++ L +Y + + +S P F
Sbjct: 32 GFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 91
Query: 485 -PDKPSPPE 492
Sbjct: 92 GLAAALEHH 100
Score = 37.4 bits (87), Expect = 0.007
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSS----TSKERPKFPLHS 1941
Y + +L +YE + ++ S P+ T H
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLAAALEHHHH 102
Score = 33.9 bits (78), Expect = 0.095
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 1143 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
D P Q ++ D A + W P + G+++ +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDV 42
Score = 32.4 bits (74), Expect = 0.40
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 4/59 (6%)
Query: 1621 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
AP + D T+ + + W P P+ + + + +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 94
Score = 79.0 bits (195), Expect = 1e-17
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 1327 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKK-GGDWVDANSVPVPNPVHT 1385
D P+ + DS+ ++W P+ ++ Y V G +
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ L G EYT V+A+++ S+P
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQP 83
Score = 70.1 bits (172), Expect = 2e-14
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 589 DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK 648
D P+ D D + +AW+ P ++ Y + + + +
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ L G EY V+A+++ S+P +
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQPLIGT 87
Score = 67.0 bits (164), Expect = 2e-13
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 175 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATS 233
DRP TD D + + W P+ +S+Y + E
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 267
+ L+ G EY V+A++ +P +
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 92
Score = 66.7 bits (163), Expect = 2e-13
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 1227 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTNLNFT 1285
D P T S+ +AW P ++ Y V G
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPS 1311
+ LR G +Y V+A+++ +P
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQPL 84
Score = 64.7 bits (158), Expect = 1e-12
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 75 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 134
P+G L +++ S + W +P+ + Y V E G G A
Sbjct: 3 DRPKG-LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 135 --ENLIEGHDYNFRVKAVNKIGESLPLV 160
+ L G +Y V A++ ES PL+
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLI 85
Score = 62.8 bits (153), Expect = 7e-12
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 1043 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRSPAY 1101
P+G L +D+ +S ++W+ P ++ Y V G +
Sbjct: 3 DRPKG-LAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLE 1129
++ GL +Y V A + S+PL
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLI 85
Score = 60.5 bits (147), Expect = 5e-11
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK-VSSYVTTPFVRV 1581
P+ L + DS+ + W P+ ++ Y V + + +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 1582 RNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L GS Y V+A + S+P
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPL 84
Score = 58.2 bits (141), Expect = 3e-10
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 489 SPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV--SLFY 546
P+G L ++V +S K++W P + Y + G
Sbjct: 3 DRPKG-LAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
++ L EY V A++ ES L T++T
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLIGTQST 90
Score = 48.6 bits (116), Expect = 7e-07
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y + G + A + L G+ Y V A + S+P+ +
Sbjct: 31 RYRVTYSSP--EDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQ 88
Score = 45.9 bits (109), Expect = 6e-06
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 815 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTL 874
D P+ + DS+ ++W P+ ++ Y V + P
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 875 LS 876
L
Sbjct: 59 LQ 60
Score = 38.5 bits (90), Expect = 0.002
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 1883 AEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
ED + ++ T + L G +Y V A + S+P +
Sbjct: 39 PEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGT 87
Score = 37.0 bits (86), Expect = 0.008
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 427 SRYIIEMAEYGLDNWKTVPGFCPKE-FFTVKGLTEGKKYVFRIRTENMYGASEPL 480
SRY + + + P +E ++GL G +Y + + S+PL
Sbjct: 30 SRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPL 84
Score = 32.4 bits (74), Expect = 0.33
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 1144 DPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
D P D D ++ + W+ P+ ++ Y+V + S
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIH 44
Score = 32.0 bits (73), Expect = 0.45
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 1619 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1678
++ P D DSI + W P+ + RY V D +
Sbjct: 1 NID-RPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEED 55
Query: 1679 S 1679
+
Sbjct: 56 T 56
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 83.4 bits (205), Expect = 2e-17
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 18/198 (9%)
Query: 1224 DPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTN-- 1281
+ +A + + + + + G + +E + P
Sbjct: 38 ELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKE 97
Query: 1282 ----LNFTVHDLREGGKYEFRVIAINEA-----GPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ EG ++ + K +I++ + +P
Sbjct: 98 VLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDF 157
Query: 1333 KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEG 1392
K I K +VT++W P+ G ++GYI+ K D + +T L+
Sbjct: 158 KASEINKKNVTVTWTEPETTEG--LEGYILYK-----DGKKVAEIGKDETSYTFKKLNRH 210
Query: 1393 EEYTFRVIAVNEAGNSEP 1410
Y F++ A G
Sbjct: 211 TIYNFKIAAKYSNGEVSS 228
Score = 75.7 bits (185), Expect = 6e-15
Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 26/222 (11%)
Query: 1106 LETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDR 1165
LE + + E G+ E + + + FT+ + V+ +++ + +
Sbjct: 18 LEALEEVQVGENIEVGVGIDELVNAE---AFAYDFTLNYDENAFEYVEAISDDGVFVNAK 74
Query: 1166 PRTDGGSKIQGY--------------KVEFRSTRTA--TDCGLGYQQCHADVGQTPHGWW 1209
DG ++ KV R+ ++ + G
Sbjct: 75 KIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAG 134
Query: 1210 LQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG 1269
+ + SP + + + + +V++ W P G + GY + + G
Sbjct: 135 TEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILY---KDG 189
Query: 1270 EWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
+ + ++T L Y F++ A G
Sbjct: 190 KKV--AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK 229
Score = 75.0 bits (183), Expect = 1e-14
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 20/245 (8%)
Query: 1369 GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV- 1427
G +A V + + + GE V ++E N+E + +E + V
Sbjct: 4 GKLKEAAEVTGSVSLEALEEVQVGENIEVGV-GIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 1428 ---MDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSAS 1484
D V ++ G+ + P PA A + ++ T ++
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKT--------EGSN 114
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPP 1544
L V NS DG ++ +P + A E ++T+ WT P
Sbjct: 115 LSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEP 174
Query: 1545 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 1604
G + Y++ K + ++ T+ + L + Y F++ A+ G
Sbjct: 175 ETTEG--LEGYILYK---DGKKVAEIGKDETS--YTFKKLNRHTIYNFKIAAKYSNGEVS 227
Query: 1605 PALTI 1609
++
Sbjct: 228 SKESL 232
Score = 72.7 bits (177), Expect = 7e-14
Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 23/228 (10%)
Query: 458 LTEGKKYVFRIRTENMYGASEPLDPLFPD----KPSPPEGPLEVSNVTKESCKLSWRVPV 513
L ++ E G E ++ V ++ + ++ + +
Sbjct: 18 LEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKK-I 76
Query: 514 DDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAV-----NSIG 568
+DG +L + + + +V
Sbjct: 77 EDGKVRVLVSSLTGEPLPAKEVL-----AKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHE 131
Query: 569 ESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKE 628
+ T +T + + + + V + W P G + YI+ K
Sbjct: 132 IAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKDG 189
Query: 629 KGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
K E+ ++T L + Y F++ A G ++
Sbjct: 190 K------KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
Score = 70.3 bits (171), Expect = 4e-13
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 18/201 (8%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+ I+ + + +DG +L + ++
Sbjct: 51 LNYDENAFEYVEAISDDGVFVNAKKI-EDGKVRVLVS-----SLTGEPLPAKEVLAKVVL 104
Query: 133 RAENLIEGHDYNFRVKAVNK-----IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 187
RAE EG + + +V + + I P + ++ K
Sbjct: 105 RAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINK 164
Query: 188 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 247
+V + WT P+ G + YI+ K +K + + T+ + L Y F++
Sbjct: 165 KNVTVTWTEPETTEG--LEGYILYKD-----GKKVAEIGKDETSYTFKKLNRHTIYNFKI 217
Query: 248 IAVNKGGPGEPSKASAPVTCK 268
A G ++ T +
Sbjct: 218 AAKYSNGEVSSKESLTLRTAR 238
Score = 68.0 bits (165), Expect = 2e-12
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 1015 VTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 1074
G N + P S+I ++ +++W P G +
Sbjct: 123 GDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--L 180
Query: 1075 TNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSI 1134
Y++ K +Y L + Y F++ A+ G E
Sbjct: 181 EGYILYKDGKKVAEIG-----KDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLR 235
Query: 1135 TAK 1137
TA+
Sbjct: 236 TAR 238
Score = 66.1 bits (160), Expect = 1e-11
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 72 HIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
I P K S I K + + W P G + Y++ K G+ V T
Sbjct: 148 EIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK----DGKKVAEIGKDETS 201
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 168
+ L YNF++ A GE + TA+
Sbjct: 202 YTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 65.0 bits (157), Expect = 3e-11
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 17/141 (12%)
Query: 453 FTVKGLTEGKKYVFRIRT-----------ENMYGASEPLDPLFPDKPSPPEGPLEVSNVT 501
+ TEG + ++ P+ P + S +
Sbjct: 104 LRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEIN 163
Query: 502 KESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRV 561
K++ ++W P G + YI+ K + Y +L Y F++
Sbjct: 164 KKNVTVTWTEPETTEG--LEGYILYKDGKKVAEIGKDETS----YTFKKLNRHTIYNFKI 217
Query: 562 KAVNSIGESDTLETTKTTVAR 582
A S GE + E+ AR
Sbjct: 218 AAKYSNGEVSSKESLTLRTAR 238
Score = 44.9 bits (105), Expect = 1e-04
Identities = 35/272 (12%), Positives = 72/272 (26%), Gaps = 46/272 (16%)
Query: 216 YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN-KGGPGEPSKASAPV-TCKPRFVA 273
+G ++A V +++ ++ +++ GE E V + +V
Sbjct: 3 HGKLKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 274 PKIK--TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ I+ GK+ + GEP P V + +
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAK--------VVLRAEAKTEGSN 114
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLN 391
++ N+ D E+ T + ++ S
Sbjct: 115 LSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASE------------- 161
Query: 392 LIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKE 451
I ++ W ++ + YI+ D K +
Sbjct: 162 -INKKNVTVTWTEPETTEGLEG---------------YILYK-----DGKKVAEIGKDET 200
Query: 452 FFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
+T K L Y F+I + G + L
Sbjct: 201 SYTFKKLNRHTIYNFKIAAKYSNGEVSSKESL 232
Score = 44.2 bits (103), Expect = 2e-04
Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 54/248 (21%)
Query: 633 YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIK 692
A EV + + ++ + + E V + + + A D + ++
Sbjct: 5 KLKEAAEVTGSVS-LEALEEVQVGE-NIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 693 ------TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ I+ GK+ + GEP P V + +
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAK--------VVLRAEAKTEGSN 114
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIM 806
++ N+ D +H + I
Sbjct: 115 LSVTNSSVGDGEGL-------------------------------VHEIAGTEKTVNIIE 143
Query: 807 EAVKSRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVP 866
+P K I K +VT++W P+ G ++GYI+ K D +
Sbjct: 144 GTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK-----DGKKVAEIG 196
Query: 867 VPNPVHTL 874
+T
Sbjct: 197 KDETSYTF 204
Score = 42.2 bits (98), Expect = 0.001
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 1873 VGVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
G+ Y+L + + + + +Y L + Y F++ AK + G +
Sbjct: 178 EGLEGYILY----KDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
Score = 41.5 bits (96), Expect = 0.002
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 21/160 (13%)
Query: 1535 DSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKV------SSYVTTPFVRVRNLAIGS 1588
D + + G + +E V + + +R GS
Sbjct: 54 DENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGS 113
Query: 1589 TYEFRVMA-----ENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSK 1643
+ + ++ T++ I+ P V K + + ++++ W++
Sbjct: 114 NLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTE 173
Query: 1644 PRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYT 1683
P G ++ YI+ K D K + A I YT
Sbjct: 174 PETTEG--LEGYILYK----DGKKV----AEIGKDETSYT 203
Score = 41.1 bits (95), Expect = 0.002
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
GY++ K G V + + T +L T Y F++ A+ G +
Sbjct: 182 GYILYK-----DGKKV---AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLT 233
Query: 961 PVVAK 965
A+
Sbjct: 234 LRTAR 238
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 78.7 bits (194), Expect = 2e-17
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTT 1280
P + VT + SS ++W + ++G+ VE + G+ + + P+T
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+ + DL G KY V I+E G T
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 91
Score = 77.9 bits (192), Expect = 3e-17
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 1384
+ V IT S +SW + G+ V+ + + GD +P
Sbjct: 6 HLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTATSV 61
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ +L G +Y V ++E G
Sbjct: 62 NIPDLLPGRKYIVNVYQISEDGEQSL 87
Score = 71.0 bits (174), Expect = 1e-14
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 170 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPAN 228
P G +VT+ + W +S + +E + G + +P+
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
T+ ++PDL G +Y V +++ G +++ T
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 68.7 bits (168), Expect = 5e-14
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
+V + ++W ++ + ++ + L++P+ T
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTAT 59
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
V IPDL G++Y V ++E G ++
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILST 91
Score = 66.4 bits (162), Expect = 3e-13
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
+ IT SS + W + D + + VE E G D+ T T
Sbjct: 6 HLVATS-ESVTEITASSFVVSWVSASDT----VSGFRVEYELSEEGDEPQYLDLPSTATS 60
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 166
+L+ G Y V +++ GE ++ S T
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 65.6 bits (160), Expect = 7e-13
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 1040 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
V++IT S +SW D ++ + VE S G + +
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 1100 -AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSIT 1135
+ ++ L R+Y V ++ G + + T
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 61.8 bits (150), Expect = 1e-11
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSS-YVTTP 1577
+ E S + W D ++ + VE + + T
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASDT----VSGFRVEYELSEEGDEPQYLDLPSTAT 59
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
V + +L G Y V ++ G L+
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILS 90
Score = 59.4 bits (144), Expect = 9e-11
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-- 543
V+ +T S +SW D + + +E G + +
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQY-LDLPST 57
Query: 544 -LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
++P L+ ++Y+ V ++ GE + +T T
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Score = 51.0 bits (122), Expect = 9e-08
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
G+ +E L+ G P + +P LL G Y V + G I +
Sbjct: 35 GFRVEYE-LSEEGDE-PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 92
Query: 961 P 961
Sbjct: 93 Q 93
Score = 45.2 bits (107), Expect = 1e-05
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 872
+ V IT S +SW + G+ V+ + + GD +P
Sbjct: 6 HLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTATSV 61
Query: 873 TL 874
+
Sbjct: 62 NI 63
Score = 39.8 bits (93), Expect = 8e-04
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 1617 PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1676
P + + T S + W + + VE L + +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 1677 DTS 1679
TS
Sbjct: 58 ATS 60
Score = 34.0 bits (78), Expect = 0.081
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 427 SRYIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
S + +E + +P + L G+KY+ + + G +
Sbjct: 34 SGFRVEYELSEEGDEPQYLDLPS--TATSVNIPDLLPGRKYIVNVYQISEDGEQSLI 88
Score = 33.6 bits (77), Expect = 0.10
Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 1139 PFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
P + + ++ + W + G++VE+ +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEE 45
Score = 33.6 bits (77), Expect = 0.13
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ + LL G Y V + G ++ +
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease
MU ectodermal dysplasia, glycoprotein, heparin-binding,
immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A*
3euu_A 3dar_A 1wvz_A
Length = 100
Score = 78.3 bits (193), Expect = 2e-17
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 2091 QAAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAG 2146
+ AP + ++ + +VKF C PT+ W N +E KQ +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 2147 DD-YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
+ ++ ++ D+G Y EN YG L+V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 66.7 bits (163), Expect = 3e-13
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 2205 VIWLHNNKEIKPSNDF-AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+ WL N KE K + Y +L + + P D G YTC N+ G + L V
Sbjct: 40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 59.0 bits (143), Expect = 2e-10
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 269 PRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 328
P + K + + A + G P P + W +GKE K +
Sbjct: 5 PYWTNT-EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
H + + SD G Y + N G ++ + V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 54.4 bits (131), Expect = 7e-09
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT 1472
+ P + + R V A P P P W N
Sbjct: 2 KRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 54
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
++ SL++++ SD G Y ++N G T H+ V+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 53.2 bits (128), Expect = 2e-08
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 2008 QAAPRFV----IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAG 2063
+ AP + ++ + +VKF C PT+ W N +E KQ +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 2064 DDYTFYSSLRKLQIDRFSIQDT 2085
+ + L ++ D
Sbjct: 62 NQHW------SLIMESVVPSDK 77
Score = 49.0 bits (117), Expect = 5e-07
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 688 APKIKTPLK----DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 743
AP K + A + G P P + W +GKE K +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 744 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFT 776
H + + SD G Y + N G ++
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 96
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS--A--QMGGIIAAFSLN 2319
+ W K+G + + Q + + + S D G Y+ + G I + L+
Sbjct: 39 TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Query: 2320 VV 2321
VV
Sbjct: 99 VV 100
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 86.3 bits (214), Expect = 2e-17
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 34/230 (14%)
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN 1714
++ D W IP SLK + +++G G FG V K
Sbjct: 171 SSKPQKPWEKDAWE------IPRESLK----------LEKKLGAGQFGEVWMATYNKHTK 214
Query: 1715 IFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFE 1774
+ A K + + + E ++M L H KL+ LH + + I EF++ G L +
Sbjct: 215 V-AVKTMKPGSMSVEAFL-AEANVMKTLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLD 271
Query: 1775 RITAPDYK-MSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFG 1833
+ + + ++I++ Q+ E + + ++N IH D++ NI+ K+ DFG
Sbjct: 272 FLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL--VCKIADFG 329
Query: 1834 LATKLDPNEVVKISTGTAEFA----APEIVEREPVGFYT---DMWAVGVL 1876
LA ++ NE G A+F APE + G +T D+W+ G+L
Sbjct: 330 LARVIEDNEYTA-REG-AKFPIKWTAPEAIN---FGSFTIKSDVWSFGIL 374
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune
system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB:
3sgk_C*
Length = 204
Score = 81.9 bits (202), Expect = 2e-17
Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 37/194 (19%)
Query: 2089 RRQAAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATPTLT-WFHNNQELKQSVKFMKRYA 2145
R + P+ V+ PQ E SV C+ T WFHN +
Sbjct: 1 RTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS------ 54
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN--------- 2196
++ I+ ++D GEY + + + V L V + L
Sbjct: 55 ----SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHL 108
Query: 2197 --HRRANK--YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
H N + V +L N K K + H I + +DSG Y C
Sbjct: 109 RCHSWKNTALHKVTYLQNGKGRKYFH--------HNSDFYIPKATLKDSGSYFCRGLVGS 160
Query: 2253 GESFSSCTLLVQVS 2266
+ SS T+ + ++
Sbjct: 161 K-NVSSETVQITIT 173
Score = 65.7 bits (160), Expect = 9e-12
Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 30/199 (15%)
Query: 2006 RRQAAPRFVIK--PQSAFCYEGQSVKFTCRVIAIATPTLT-WFHNNQELKQSVK--FMKR 2060
R + P+ V+ PQ E SV C+ T WFHN + F+
Sbjct: 1 RTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDA 60
Query: 2061 YAGDDYTFYSSLRKLQIDRFSIQDTSFDRR-----QAAPRFVIKPQSAFCYEGQSVKFTC 2115
DD Y R Q ++ + P+ F E + C
Sbjct: 61 ATVDDSGEY---------RCQTQLSTLSDPVQLEVHIGWLLLQAPRWVF-KEEDPIHLRC 110
Query: 2116 RVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAEN-HYG 2173
+T+ N + K + F I + ++D G Y R
Sbjct: 111 HSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKN 162
Query: 2174 YREEVVFLNVQRKYDLPVI 2192
E V + + + + I
Sbjct: 163 VSSETVQITITQGLAVSTI 181
Score = 37.2 bits (86), Expect = 0.029
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR-DE 357
+VT+ +GK K + I DSG+Y S
Sbjct: 115 NTALHKVTYLQNGKGRK-YFHHNSDFYIP--------KATLKDSGSYFCRGLVGSKNVSS 165
Query: 358 GSFTVTVLETISKTNTTTISS 378
+ +T+ + ++ + ++
Sbjct: 166 ETVQITITQGLAVSTISSFFP 186
Score = 34.9 bits (80), Expect = 0.20
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 1421 EQPNKPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQL 1478
E K V+ L + V + P+ + + ++ +
Sbjct: 3 EDLPKAVVFLEP-QWYRVLEKDSVTLKCQGA--YSPEDQSTQWFHN----------ESLI 49
Query: 1479 TMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLT 1538
+ ++S + + D G+YR Q + D L V + E D +
Sbjct: 50 SSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKE--EDPIH 107
Query: 1539 L 1539
L
Sbjct: 108 L 108
Score = 32.2 bits (73), Expect = 1.3
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
+ +DS C+ + W+ + + +S ++Y
Sbjct: 17 YRVLEKDSVTLKCQG--------AYSPEDQSTQWFHNESLISSQASSYF----------- 57
Query: 2294 ILSTTLDDVGQYS--AQMGGIIAAFSLNV 2320
I + T+DD G+Y Q+ + L V
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSDPVQLEV 86
Score = 31.0 bits (70), Expect = 3.2
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 770
+VT+ +GK K + I DSG+Y S
Sbjct: 115 NTALHKVTYLQNGKGRK-YFHHNSDFYIP--------KATLKDSGSYFCRGLVGSKN 162
Score = 30.2 bits (68), Expect = 5.9
Identities = 14/142 (9%), Positives = 37/142 (26%), Gaps = 18/142 (12%)
Query: 1390 SEGEEYTFRVIAVNEAGN----SEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFS 1445
S+ Y V+++G ++ S PV +E ++ K +
Sbjct: 51 SQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAP---RWVFKEEDPIH 107
Query: 1446 IHVPFMAFPQPAAF-WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN 1504
+ + N +++ + + D G Y +
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYFH---------HNSDFYIPKATLKDSGSYFCRGLV 158
Query: 1505 PAG-FDTATLHVRVLDRPHPPE 1525
+ + T+ + +
Sbjct: 159 GSKNVSSETVQITITQGLAVST 180
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 83.8 bits (208), Expect = 2e-17
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 34/223 (15%)
Query: 1662 ISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI 1721
+D+W +P +LK ++E +G G FG V + A K +
Sbjct: 3 WWEDEWE------VPRETLK----------LVERLGAGQFGEVWMGYYNGHTKV-AVKSL 45
Query: 1722 PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPD- 1780
+ E ++M QL H +L+ L+ + + I E++ G L + + P
Sbjct: 46 KQGSMSPDAFL-AEANLMKQLQHQRLVRLYAVVTQEPIYI-ITEYMENGSLVDFLKTPSG 103
Query: 1781 YKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP 1840
K++ ++++ Q+ E + + E+N IH D++ NI+ S K+ DFGLA ++
Sbjct: 104 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLS--CKIADFGLARLIED 161
Query: 1841 NEVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVL 1876
NE G A+F APE + G +T D+W+ G+L
Sbjct: 162 NEYTA-REG-AKFPIKWTAPEAINY---GTFTIKSDVWSFGIL 199
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 79.2 bits (195), Expect = 3e-17
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 1293 GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHD 1352
+ + + Q D P +V T S+ +SW P
Sbjct: 3 HHHHHHSSDYKDDDDKGENLYF-------QGSVSDVPTKLEVVAATPTSLLISWDAP--- 52
Query: 1353 GGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPG 1411
++ Y + G V +VP T+ L G +YT V AV
Sbjct: 53 -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA- 110
Query: 1412 KQSGPVIV 1419
S P+ +
Sbjct: 111 -GSKPISI 117
Score = 76.5 bits (188), Expect = 2e-16
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 554 RKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLN 613
+ + + + +V D P K V + ++W P
Sbjct: 2 KHHHHHHSSDYKDDDDKGENLYFQGSV-------SDVPTKLEVVAATPTSLLISWDAP-- 52
Query: 614 DGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEP 673
+ Y I E G + VP +K+ I L G +Y V AV
Sbjct: 53 --AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110
Query: 674 S 674
Sbjct: 111 G 111
Score = 75.3 bits (185), Expect = 6e-16
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 14/127 (11%)
Query: 141 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD 200
H ++ + D P + V + + W P
Sbjct: 3 HHHHHHSSDYKDDDDKGE-------NLYFQGSVSDVPTKLEVVAATPTSLLISWDAP--- 52
Query: 201 GGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 259
+ Y I G VP + + ++ LK G +Y V AV
Sbjct: 53 -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 260 KASAPVT 266
S P++
Sbjct: 112 --SKPIS 116
Score = 69.5 bits (170), Expect = 6e-14
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 1221 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPT 1279
D P++ EV +P+S+ ++W+ PA + Y + G ++ P
Sbjct: 24 FQGSVSDVPTKLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPG 79
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
+ T+ L+ G Y V A+
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Score = 62.2 bits (151), Expect = 2e-11
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
P L+V TP S +SW P + Y + Y G V
Sbjct: 26 GSVSDVPTK-LEVVAATPTSLLISWDAP----AVTVRYYRIT-YGETGGNSPVQEFTVPG 79
Query: 1099 PA--YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAK 1137
+ GL+ Y V A + SI +
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 57.6 bits (139), Expect = 1e-09
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+ P L+ T +S + W AP + +Y + + V V G+ +
Sbjct: 28 VSDVPTK-LEVVAATPTSLLISWDAPAVT----VRYYRITYGETGGNSPVQEFTVPGSKS 82
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLP 158
A L G DY V AV + L
Sbjct: 83 TATISGLKPGVDYTITVYAVTGLRLMLA 110
Score = 55.7 bits (134), Expect = 5e-09
Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 13/113 (11%)
Query: 475 GASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGT 534
P LEV T S +SW P + +Y I + +
Sbjct: 16 DDKGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNS 70
Query: 535 WS-----DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ + L +Y V AV + + R
Sbjct: 71 PVQEFTVPGSKST---ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 54.5 bits (131), Expect = 1e-08
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 9/89 (10%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTP 1577
P L SL + W P + Y + + + V +T
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKST- 83
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L G Y V A L
Sbjct: 84 -ATISGLKPGVDYTITVYAVTGLRLMLAG 111
Score = 43.7 bits (103), Expect = 6e-05
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
D P +V T S+ +SW P ++ Y + + GG+ VP T
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNS-PVQEFTVPGSKST 83
Score = 41.4 bits (97), Expect = 4e-04
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL----SEPI 956
Y I + T G V V AT+ L G Y V A L S+PI
Sbjct: 58 YYRITYGE-TGGNSPVQEFT-VPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115
Query: 957 TT 958
+
Sbjct: 116 SI 117
Score = 39.1 bits (91), Expect = 0.002
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 11/90 (12%)
Query: 1590 YEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGG 1649
+ L V P + V +T S+ + W P
Sbjct: 5 HHHHSSDYKDDDDKGENLYF-------QGSVSDVPTKLEVVAATPTSLLISWDAPA---- 53
Query: 1650 SPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
++ Y + + ++ ++
Sbjct: 54 VTVRYYRITYGETGGNSPVQEFTVPGSKST 83
Score = 37.9 bits (88), Expect = 0.006
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 1110 RQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTD 1169
+ F +V D P + ++V + + WD P
Sbjct: 3 HHHHHHSSDYKDDDDKGE-------NLYFQGSVSDVPTKLEVVAATPTSLLISWDAPA-- 53
Query: 1170 GGSKIQGYKVEFRSTRTAT 1188
++ Y++ + T +
Sbjct: 54 --VTVRYYRITYGETGGNS 70
Score = 34.1 bits (78), Expect = 0.14
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
T + L G DY V A S
Sbjct: 83 TATISGLKPGVDYTITVYAVTGLRLMLAGSKP 114
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 82.2 bits (202), Expect = 3e-17
Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 13/208 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRW-----VPMGD 126
P+ P ++T +S +W + + IL + D + V
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 127 VSGTYTRAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAK-DPFGRPDRPGQPTVT 183
+ +NL+ V+A N +G ES L K +P P V
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVV 124
Query: 184 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGE 241
+ L W P K + + +P+ + + + L +
Sbjct: 125 SHQPGCLWLSWKPWKPSEYMEQ-ECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAP 183
Query: 242 EYEFRVIAVNKGGPGEPSKASAPVTCKP 269
Y ++ + PG S S + +P
Sbjct: 184 VYTLQMRCIRSSLPGFWSPWSPGLQLRP 211
Score = 81.4 bits (200), Expect = 5e-17
Identities = 28/209 (13%), Positives = 65/209 (31%), Gaps = 16/209 (7%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDG--GAPILHYIIEKMDISRGTWSDAGMTV--- 542
P+ P + ++T S W + + IL + D +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 543 --SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK--- 597
+ L+ + V+A N +G + E+ K + + + + P +
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLG---SSESPKLCLDPMDVVKLEPPMLQALDIGP 121
Query: 598 ---DWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTK 654
+ L+WKP + + + W +P++K ++ L +
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 655 GQEYEFRVIAVNEAGPSEPSDASDIIMCK 683
Y ++ + + P S S + +
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 78.3 bits (192), Expect = 6e-16
Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 17/210 (8%)
Query: 1225 PPDAPSQPE-VTGYSPSSVSLAWNPPANHG--GRPITGYYVEKRERGGEWLRANNYPTTN 1281
PP +PS + + +S+ W P I + + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 1282 LN----FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDR- 1336
+L V A N G + K K +PP +D
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDP---MDVVKLEPPMLQALDIG 120
Query: 1337 -----ITKDSVTLSWRPPKHDGGARIKGYI-VQKRKKGGDWVDANSVPVPNPVHTVGNLS 1390
+ LSW+P K + + Q + KG +W +P + L
Sbjct: 121 PDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLH 180
Query: 1391 EGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
+ YT ++ + + S + +
Sbjct: 181 QAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 72.9 bits (178), Expect = 4e-14
Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 35/209 (16%)
Query: 1145 PPGQPQIV----DWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHAD 1200
PP P + TN+ W+ + FRS G C A
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 1201 VGQ-------------TPHGWWLQDSRIQGRIQSP---FDP-----PDAPS------QPE 1233
Q W+Q + G +SP DP + P P+
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 1234 VTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE--WLRANNYPTTNLNFTVHDLRE 1291
V + P + L+W P + + + W + P++ F + L +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQE-CELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 1292 GGKYEFRVIAINEAGPGKPSKPTDIVQCK 1320
Y ++ I + PG S + +Q +
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 59.4 bits (143), Expect = 1e-09
Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 16/177 (9%)
Query: 1521 PHPPENLHADEFAGD--SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
P P NL SL W P + T+++++ + + +
Sbjct: 5 PASPSNLSC-LMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVA 61
Query: 1579 VRVRN--------LAIGSTYEFRVMAENQYGLSK-PALTIDPIKAKH--PFDVPGAPGAP 1627
+ +N L + V AEN G S+ P L +DP+ P + P
Sbjct: 62 KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGP 121
Query: 1628 KGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTS 1684
V + L W + + + + + W +
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCG 178
Score = 52.1 bits (124), Expect = 4e-07
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 14/159 (8%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
P+ P + +T S W+P + T+++++ + S + + A
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPE--THLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 1101 -------YDVFGLETNRQYRFRVRAENQYG--VSEPLELD-NSITAKFPFTVPDPPGQPQ 1150
L + V+AEN G S L LD + P + P
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 1151 IVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+V L W + + + ++ ++ +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQE-CELRYQPQLKGAN 160
Score = 51.4 bits (122), Expect = 8e-07
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 10/143 (6%)
Query: 1469 DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLDRPHPPE 1525
D+ + N+ S+ KN +Q +N G L + + PP
Sbjct: 54 DTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPM 113
Query: 1526 NLHAD------EFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTT-PF 1578
D L L W P + + E + + WT V ++
Sbjct: 114 LQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQ 173
Query: 1579 VRVRNLAIGSTYEFRVMAENQYG 1601
+ L Y ++
Sbjct: 174 FELCGLHQAPVYTLQMRCIRSSL 196
Score = 49.8 bits (118), Expect = 2e-06
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 1040 DKPSPPQGP-----LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
K PP DV P LSWKP + + + W+ +
Sbjct: 107 VKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFH 166
Query: 1095 F-VRSPAYDVFGLETNRQYRFRVRAENQYGV------SEPLEL 1130
+++ GL Y ++R S L+L
Sbjct: 167 LPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQL 209
Score = 41.7 bits (97), Expect = 0.001
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 12/111 (10%)
Query: 1328 PPEAPK----VDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 1383
PP +P + +T +S+ W P + + R + +++P
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 1384 H-------TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
NL + V A N G+SE K + + P+
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPM 113
Score = 36.7 bits (84), Expect = 0.047
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL------SEP 955
+ + G W V H+ + L + Y ++R S
Sbjct: 148 CELRYQPQLKGANWTL-VFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPG 206
Query: 956 ITTK 959
+ +
Sbjct: 207 LQLR 210
Score = 35.6 bits (81), Expect = 0.11
Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 12/140 (8%)
Query: 177 PGQPT----VTDWGKDHVDLEWTPPKKDGGSPIS---QYIIEKKPKYGPWEKACIVPANI 229
P P+ + + + +W P + P S + + + A
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 230 TATS----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIII 285
+ +L + V A N G E K + P ++ +
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDV 123
Query: 286 KAGKILNVEIQFIGEPPPEV 305
+ + + + + P E
Sbjct: 124 VSHQPGCLWLSWKPWKPSEY 143
Score = 34.4 bits (78), Expect = 0.27
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPS 1928
+ NW + + + L Q Y +++ ++ S
Sbjct: 157 KGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWS 201
Score = 34.0 bits (77), Expect = 0.40
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 10/141 (7%)
Query: 588 PDAPEKPT-VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVP----- 641
P +P + + + + W+P + P T +I++ +P
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLP-TSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 642 --ANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDII 699
N + +L Q V A N G SE M + P ++
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 700 IKAGKILNVEIQFIGEPPPEV 720
+ + + + + + P E
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEY 143
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 84.8 bits (210), Expect = 3e-17
Identities = 29/195 (14%), Positives = 70/195 (35%), Gaps = 34/195 (17%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 1748
+ + ++IG+G FG+++ A + V + L E+ ++ I
Sbjct: 38 QWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFS-ELKFYQRVAKKDCI 96
Query: 1749 NLHDAFEDDDEM-------------------VLIFEFL--SGGELFERITAPDYKMSEAE 1787
+ D + ++ E L ++ + + ++
Sbjct: 97 KKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQ----NGTFKKST 152
Query: 1788 VINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK-LDPNEVVKI 1846
V+ ++ + ++++HE +H D+K N++ +N V + D+GL+ + +
Sbjct: 153 VLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQY 212
Query: 1847 S-------TGTAEFA 1854
GT EF
Sbjct: 213 QENPRKGHNGTIEFT 227
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 84.5 bits (209), Expect = 3e-17
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 1687 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR-KEIDIMNQLHHP 1745
D+ +LE IG G +G V++ A K ++ + I K I + + H
Sbjct: 12 LDNLKLLELIGRGRYGAVYKGSLD--ERPVAVKVFSFAN--RQNFINEKNIYRVPLMEHD 67
Query: 1746 KLINL-----HDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK 1800
+ + E +L+ E+ G L + ++ + V +
Sbjct: 68 NIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS--LHTSDWVSSCRLAHSVTRGLA 125
Query: 1801 HMHE---------KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIS---- 1847
++H I H D+ N++ +N + DFGL+ +L N +V+
Sbjct: 126 YLHTELPRGDHYKPAISHRDLNSRNVL--VKNDGTCVISDFGLSMRLTGNRLVRPGEEDN 183
Query: 1848 -----TGTAEFAAPEIVE-------REPVGFYTDMWAVGVL 1876
GT + APE++E E DM+A+G++
Sbjct: 184 AAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLI 224
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 84.2 bits (207), Expect = 3e-17
Identities = 34/269 (12%), Positives = 69/269 (25%), Gaps = 20/269 (7%)
Query: 1433 VRDITVKAGEDFSIH-----VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVV 1487
V V G+ + P+P W + + T S + +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQES-IITL 65
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHA-DEFAGDSLTLYWTPPRD 1546
+ + + + +R P P NL SL W P +
Sbjct: 66 PHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPE 125
Query: 1547 NGGSEITNYVVEKKDYNSTVWTKVSSYV--------TTPFVRVRNLAIGSTYEFRVMAEN 1598
T++ ++ T+ S + + + ++L + V AEN
Sbjct: 126 THLP--TSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAEN 183
Query: 1599 QYGLSKP---ALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRY 1655
G S L + P + +P+ + L W + +
Sbjct: 184 ALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCE 243
Query: 1656 IVEKRLISDDKWIKASMAHIPDTSLKYTS 1684
+ K + W + +
Sbjct: 244 LRHKPQRGEASWALVGPLPLEALQYELCG 272
Score = 79.2 bits (194), Expect = 1e-15
Identities = 43/262 (16%), Positives = 72/262 (27%), Gaps = 25/262 (9%)
Query: 37 SYQTGIVRVNCVDCLDRTNTAQFAVGKCALAL---------QWLHIPSPPEGPLKPS--- 84
Q A C+L L PP P S
Sbjct: 50 RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLM 109
Query: 85 NITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETG-----RWVPMGDVSGTYTRAENL 137
N+T SS +W + + L + + +T VP S ++L
Sbjct: 110 NLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHL 169
Query: 138 IEGHDYNFRVKAVNKIG--ESLPL-VCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEW 194
+ + V+A N +G S L + + +P P + L W
Sbjct: 170 LLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229
Query: 195 TPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANITATSVPDLKEGEEYEFRVIAVNK 252
P + + + KP+ G W +P + L Y ++ +
Sbjct: 230 EPWQPGLHINQ-KCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW 288
Query: 253 GGPGEPSKASAPVTCKPRFVAP 274
PG S S + + A
Sbjct: 289 PLPGHWSDWSPSLELRTTERAA 310
Score = 77.3 bits (189), Expect = 6e-15
Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 21/226 (9%)
Query: 472 NMYGASEPLDPLFPDKPSPPEGPLEVS---NVTKESCKLSWRVPVDDG--GAPILHYIIE 526
N + + LD + PP P +S N+T S W + + L
Sbjct: 80 NWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKS 139
Query: 527 KMDISRGTWS-----DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
+ + S L+ + V+A N++G T + + +
Sbjct: 140 RGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALG---TSMSPQLCLD 196
Query: 582 RNEFDEPDAPEKPTV------KDWGEDFVDLAWKPPLNDGGSPITDYIIQ-KKEKGNPYW 634
+ + + P T+ + L+W+P ++ K ++G W
Sbjct: 197 PMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQRGEASW 255
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDII 680
+P ++ L Y ++ + P SD S +
Sbjct: 256 ALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSL 301
Score = 76.5 bits (187), Expect = 1e-14
Identities = 45/319 (14%), Positives = 83/319 (26%), Gaps = 40/319 (12%)
Query: 1128 LELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTA 1187
+ L + ITA P+ A L + Q +
Sbjct: 12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71
Query: 1188 TDCGLGYQQCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPE-VTGYSPSSVSLAW 1246
C + G + + R PP P + + SS+ W
Sbjct: 72 QAFL----SCSLNWGNSLQILDQVELRAG-------YPPAIPHNLSCLMNLTTSSLICQW 120
Query: 1247 NPPANHGGRPITGYYVEKRERGGEWLRANNYP-------TTNLNFTVHDLREGGKYEFRV 1299
P P + + RG + ++ ++ + L V
Sbjct: 121 EPGPE-THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWV 179
Query: 1300 IAINEAGPGKPS----KPTDIVQCKEQKRKPDPPEAPKVDRI------TKDSVTLSWRPP 1349
A N G P D+V K +PP +D + LSW P
Sbjct: 180 QAENALGTSMSPQLCLDPMDVV-------KLEPPMLRTMDPSPEAAPPQAGCLQLSWEPW 232
Query: 1350 KHDGGARIKGYIVQKRKKGGD--WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGN 1407
+ K ++ + + G+ W +P+ + + L YT ++ +
Sbjct: 233 QPGLHINQK-CELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLP 291
Query: 1408 SEPGKQSGPVIVEEQPNKP 1426
S + +
Sbjct: 292 GHWSDWSPSLELRTTERAA 310
Score = 68.0 bits (165), Expect = 8e-12
Identities = 35/221 (15%), Positives = 58/221 (26%), Gaps = 35/221 (15%)
Query: 1141 TVPDPPGQPQ----IVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQ 1196
PP P +++ T++ W+ + F+S G
Sbjct: 94 RAGYPPAIPHNLSCLMNLTTSSLICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILD 152
Query: 1197 CHADVGQ-------------TPHGWWLQDSRIQGRIQS--------------PFDPPDAP 1229
C GQ G W+Q G S P
Sbjct: 153 CVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMD 212
Query: 1230 SQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE--WLRANNYPTTNLNFTVH 1287
PE + L+W P + + + GE W P L + +
Sbjct: 213 PSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQRGEASWALVGPLPLEALQYELC 271
Query: 1288 DLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
L Y ++ I PG S + ++ + +R P
Sbjct: 272 GLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312
Score = 51.1 bits (121), Expect = 2e-06
Identities = 20/143 (13%), Positives = 34/143 (23%), Gaps = 10/143 (6%)
Query: 1469 DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLDRPHPPE 1525
DS + + S+ K+ +Q +N G L + + PP
Sbjct: 148 DSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPM 207
Query: 1526 NLHAD------EFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF- 1578
D L L W P + + K W V
Sbjct: 208 LRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQ 267
Query: 1579 VRVRNLAIGSTYEFRVMAENQYG 1601
+ L + Y ++
Sbjct: 268 YELCGLLPATAYTLQIRCIRWPL 290
Score = 44.9 bits (105), Expect = 2e-04
Identities = 27/232 (11%), Positives = 46/232 (19%), Gaps = 70/232 (30%)
Query: 915 WVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDK 974
+ V LL V+AEN G S
Sbjct: 150 ILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMS------------------- 190
Query: 975 WTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHG 1034
+D V+ P PE + L
Sbjct: 191 --------------PQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQL--------- 227
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
SW+P + K + W+ +
Sbjct: 228 ---------------------------SWEPWQPGLHINQKCELRHKPQRGEASWALVGP 260
Query: 1095 F-VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDP 1145
+ + Y++ GL Y ++R + S+ + P
Sbjct: 261 LPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312
Score = 42.6 bits (99), Expect = 0.001
Identities = 31/211 (14%), Positives = 59/211 (27%), Gaps = 22/211 (10%)
Query: 1229 PSQPEVTGYSPSSVSLAWNPPANHGG-RPITGYYVEKRERGGEWLRANNYPTTNLNFTVH 1287
S P V P + S +H P + + + G + + T T+
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 1288 DLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPK----VDRITKDSVT 1343
L F ++N + ++ R PP P + +T S+
Sbjct: 67 HLNHT--QAFLSCSLNWGNSLQILDQVEL-------RAGYPPAIPHNLSCLMNLTTSSLI 117
Query: 1344 LSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT-------VGNLSEGEEYT 1396
W P + + + +G +S+ P +L +
Sbjct: 118 CQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMG 176
Query: 1397 FRVIAVNEAGNSEPGKQSGPVIVEEQPNKPV 1427
V A N G S + + + P+
Sbjct: 177 IWVQAENALGTSMSPQLCLDPMDVVKLEPPM 207
Score = 42.2 bits (98), Expect = 0.001
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 21/240 (8%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV-VEKMDMETGRWVPMGDVSGTY 131
S P L IT +SC ++ D IL + E + + G
Sbjct: 6 SVSAPIVHLG-DPIT-ASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 132 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT-VTDWGKDHV 190
T + + G SL ++ Q + A P P P + + + +
Sbjct: 64 TLPHLNHTQAFLSCSLNW----GNSLQILDQVELRAGYP---PAIPHNLSCLMNLTTSSL 116
Query: 191 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT-------SVPDLKEGEEY 243
+W P + P S + K + + + + L +
Sbjct: 117 ICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNM 175
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
V A N G + + P ++T + +++ + EP
Sbjct: 176 GIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW--EPWQ 233
Score = 38.8 bits (89), Expect = 0.019
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ +W + ++ Y + LL Y +++ S S
Sbjct: 251 GEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPS 300
Score = 37.2 bits (85), Expect = 0.053
Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 20/241 (8%)
Query: 487 KPSPPEGPLEV-SNVTKESCKLSWRVPVDDGGAPILHYII-EKMDISRGTWSDAGMTVSL 544
S + + +T SC + D IL + E R G S+
Sbjct: 4 HISVSAPIVHLGDPITA-SCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESI 62
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPT-VKDWGEDF 603
+ + NS+ D +E P P + + +
Sbjct: 63 ITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYP-------PAIPHNLSCLMNLTTSS 115
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTD------VKIPDLTKGQE 657
+ W+P + P + + K +GN + D + L Q
Sbjct: 116 LICQWEPG-PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQN 174
Query: 658 YEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPP 717
V A N G S M + P ++T + +++ + EP
Sbjct: 175 MGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW--EPW 232
Query: 718 P 718
Sbjct: 233 Q 233
Score = 36.4 bits (83), Expect = 0.089
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 7/66 (10%)
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL------SEP 955
+ + W V + + LL T Y ++R S
Sbjct: 242 CELRHKPQRGEASWAL-VGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPS 300
Query: 956 ITTKEP 961
+ +
Sbjct: 301 LELRTT 306
Score = 34.5 bits (78), Expect = 0.42
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 813 KPDPPEAPKVDRI------TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD--WVDANS 864
K +PP +D + LSW P + K ++ + + G+ W
Sbjct: 202 KLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQRGEASWALVGP 260
Query: 865 VPVPNPVHTLLS 876
+P+ + L
Sbjct: 261 LPLEALQYELCG 272
Score = 30.7 bits (68), Expect = 6.3
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 428 RYIIEM-AEYGLDNWKTVPGFCPKEF-FTVKGLTEGKKYVFRIRTENMYGA------SEP 479
+ + + G +W V + + + GL Y +IR S
Sbjct: 241 KCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPS 300
Query: 480 LDPLFPDKPSPP 491
L+ ++ + P
Sbjct: 301 LELRTTERAAAP 312
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 113
Score = 78.3 bits (193), Expect = 4e-17
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPI---TGYYVEKRERGGEWLRANNYPTTN 1281
P P + + S ++ + W + + I Y V + + N T
Sbjct: 8 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 67
Query: 1282 LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
L++ V L+ YEF V+ S
Sbjct: 68 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
Score = 68.3 bits (167), Expect = 1e-13
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPP---KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 1382
PP + ++ D++ ++W KH + Y V+ + +
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 1383 VHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+ V L Y F V+ +S S
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHG 102
Score = 59.1 bits (143), Expect = 2e-10
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 177 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P + D + + W K + Y + K K A +
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
V LK YEF V+ S
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGT 103
Score = 57.9 bits (140), Expect = 5e-10
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITN---YVVEKKDYNSTVWTKVSSYVTTP 1577
PP + A + D++ + W +IT+ Y V K ++ TT
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
V L + YEF VM S + + G
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS---MTAHGTTFELSGPSSG 113
Score = 57.5 bits (139), Expect = 7e-10
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN---YVVEKYESATGFWSKLSSF 1095
+ P P + S ++ ++ ++W IT+ Y V + ++
Sbjct: 5 SSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 64
Query: 1096 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
+ +Y V GL+ N Y F V S
Sbjct: 65 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 96
Score = 56.4 bits (136), Expect = 2e-09
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 4/91 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD---YIIQKKEKGNPYWMNALEVPANK 644
P D + + W ITD Y ++ K A
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYKNANATT 67
Query: 645 TDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ L YEF V+ S S
Sbjct: 68 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 98
Score = 48.7 bits (116), Expect = 9e-07
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWVPMGDVSG 129
PP G ++ S ++ + + W + TD +Y V K ++ + +
Sbjct: 9 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 67
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGES 156
L Y F V S
Sbjct: 68 LSYLVTGLKPNTLYEFSVMVTKGRRSS 94
Score = 46.8 bits (111), Expect = 4e-06
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGG---APILHYIIE-KMDISRGTWSDAGM 540
P P ++ S ++ ++ +++W +Y + K +I T
Sbjct: 5 SSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 64
Query: 541 TVSLFYDVPRLIHRKEYLFRVKAVNSIGESD 571
+L Y V L Y F V S
Sbjct: 65 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSST 95
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/154 (11%), Positives = 30/154 (19%), Gaps = 59/154 (38%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP + ++ D++ ++W +I
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSR------------------------ 44
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
Y + + + + V
Sbjct: 45 ---------------------------YYTVRWKTNIPANTKY---KNANATTLSYLVTG 74
Query: 934 LLEGTTYEFRVRAENLQGLSEP-----ITTKEPV 962
L T YEF V + S TT E
Sbjct: 75 LKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELS 108
Score = 36.7 bits (85), Expect = 0.013
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 1878 YVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ ++ +T ++ AN +Y+V L YEF V S S T
Sbjct: 50 WKTNIPANTKYKNAN---ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 99
Score = 34.0 bits (78), Expect = 0.12
Identities = 9/67 (13%), Positives = 13/67 (19%), Gaps = 4/67 (5%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF---- 484
Y + N K + V GL Y F + +S
Sbjct: 46 YTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 105
Query: 485 PDKPSPP 491
Sbjct: 106 ELSGPSS 112
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 77.5 bits (191), Expect = 5e-17
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLN 1283
P++ EV +P+S+ ++W+ + + Y + E GG+ ++ P
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQ 1318
T+ L+ G Y V A + PG +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
Score = 77.1 bits (190), Expect = 7e-17
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 1321 EQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPV 1379
P +V T S+ +SW +K Y + + GGD V +VP
Sbjct: 3 SGSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPG 61
Query: 1380 PNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
T+ L G +YT V A + + P+ +
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYE--PNSPISI 99
Score = 75.9 bits (187), Expect = 2e-16
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P K V D + ++W + + Y I E G + VP +
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPS 674
I L G +Y V A + P
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 69.4 bits (170), Expect = 4e-14
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 232
P + V D + + W + Y I G + VP +
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
++ LK G +Y V A + PG ++P++
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEP--NSPIS 98
Score = 64.4 bits (157), Expect = 2e-12
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
S P L+V D TP S +SW + Y + Y G V
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRIT-YGETGGDSPVQEFTVPGYYS 64
Query: 1101 -YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAK 1137
+ GL+ Y V A + + SI +
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 57.8 bits (140), Expect = 5e-10
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
S P L+ + T +S + W A ++ +Y + + V V G Y+
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLP 158
A L G DY V A +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYE 92
Score = 57.5 bits (139), Expect = 6e-10
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTPFV 1579
P L + SL + W + + Y + + + V Y +T
Sbjct: 10 VPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST--A 66
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L G Y V A + +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 55.5 bits (134), Expect = 3e-09
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---L 544
S P LEV + T S K+SW + +Y I + + TV
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQE-FTVPGYYS 64
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ L +Y V A ++ + + R
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 48.2 bits (115), Expect = 1e-06
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P +V T S+ +SW +K Y + + GGD VP T
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDS-PVQEFTVPGYYST 65
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL----SEPI 956
Y I + GG V Y AT+ L G Y V A + + PI
Sbjct: 40 YYRITYGET--GGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPI 97
Query: 957 TTK 959
+
Sbjct: 98 SIN 100
Score = 37.0 bits (86), Expect = 0.009
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+V P + ++VD + + WD + ++ Y++ + T
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGET 48
Score = 36.3 bits (84), Expect = 0.014
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
V P + VD+T S+ + W ++ Y + D ++ +P
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFT--VPGYY 63
Query: 1680 LKYT 1683
T
Sbjct: 64 STAT 67
Score = 34.3 bits (79), Expect = 0.076
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
T + L G DY V A + ++
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNS 95
Score = 29.0 bits (65), Expect = 5.2
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP 479
Y I E G D+ TVPG T+ GL G Y + + +
Sbjct: 39 KYYRITYGETGGDSPVQEFTVPG--YYSTATISGLKPGVDYTITVYAYDTFFPGYE 92
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 82.6 bits (205), Expect = 6e-17
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 37/227 (16%)
Query: 1662 ISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHR--CRERKTGNIFAA- 1718
+ ++ I + + +G G FG V+ K I A
Sbjct: 2 MGGPQY------GIAREDVV----------LNRILGEGFFGEVYEGVYTNHKGEKINVAV 45
Query: 1719 KFIPVSHNL-EKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERIT 1777
K L KE E IM L HP ++ L +++ +I E GEL +
Sbjct: 46 KTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI-GIIEEEPTWIIMELYPYGELGHYLE 104
Query: 1778 APDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK 1837
+ ++ Y Q+C+A+ ++ N +H D+ NI+ + VK+ DFGL+
Sbjct: 105 RNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPEC--VKLGDFGLSRY 162
Query: 1838 LDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
++ + K +PE I R +T D+W V
Sbjct: 163 IEDEDYYK--ASVTRLPIKWMSPESINFRR----FTTASDVWMFAVC 203
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 77.2 bits (190), Expect = 6e-17
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 1384
PP A + +T +V L+W+P A Y+V+ + V V P
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ L G +Y V ++ SE
Sbjct: 64 LLDGLEPGRDYEVSVQSLRGPEGSEA 89
Score = 71.4 bits (175), Expect = 7e-15
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + P PP L ++ +TP + L+W+P + T+Y+V ++ +
Sbjct: 1 GSSGSSGPLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEERE 55
Query: 1095 F-VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
V P + GLE R Y V++ SE I A+ T P
Sbjct: 56 VQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR----GIRAR---TPTSGP 101
Score = 71.4 bits (175), Expect = 8e-15
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 575 TTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW 634
++ ++ P T+ V L W+P + T Y+++
Sbjct: 2 SSGSSGP------LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGE 50
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
EV + +V + L G++YE V ++ SE
Sbjct: 51 EEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Score = 68.7 bits (168), Expect = 8e-14
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 6/88 (6%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNLN 1283
P P + +P +V L W P A T Y V
Sbjct: 8 PLPPPRALTLAAVTPRTVHLTWQPSA-----GATHYLVRCSPASPKGEEEEREVQVGRPE 62
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPS 1311
+ L G YE V ++ +
Sbjct: 63 VLLDGLEPGRDYEVSVQSLRGPEGSEAR 90
Score = 62.2 bits (151), Expect = 1e-11
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 177 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVP 235
P T+ V L W P + + Y++ P E+ V +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 236 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
L+ G +YE V ++ E A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 59.1 bits (143), Expect = 1e-10
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P PP L + +T + +L W+ HY+V +V
Sbjct: 8 PLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPE 62
Query: 134 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
+ L G DY V+++ S ++ P
Sbjct: 63 VLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
Score = 57.9 bits (140), Expect = 4e-10
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFVRV 1581
PP L ++ L W P + T+Y+V + + V P V +
Sbjct: 11 PPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLL 65
Query: 1582 RNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVP 1621
L G YE V + S+ I+A+ P P
Sbjct: 66 DGLEPGRDYEVSVQSLRGPEGSEAR----GIRARTPTSGP 101
Score = 55.2 bits (133), Expect = 4e-09
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-- 543
P PP L ++ VT + L+W+ A HY++ S + V
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEE-REVQVG 59
Query: 544 -LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPE 592
+ L ++Y V+++ S+ T P
Sbjct: 60 RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRART-------PTSGPS 102
Score = 48.3 bits (115), Expect = 1e-06
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANSVPVPNPVH 872
PP A + +T +V L+W+P A Y+V+ + V V P
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63
Query: 873 TL 874
L
Sbjct: 64 LL 65
Score = 43.7 bits (103), Expect = 5e-05
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
Y++ + G V + L G YE V++ SE +
Sbjct: 36 THYLVRCSPASPKGEEEERE--VQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Query: 960 E 960
Sbjct: 94 A 94
Score = 38.3 bits (89), Expect = 0.003
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 427 SRYIIEMAEYGLDNW---KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
+ Y++ + + V P+ + GL G+ Y +++ SE
Sbjct: 36 THYLVRCSPASPKGEEEEREVQVGRPE--VLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Query: 484 FPDKPSPPE 492
S P
Sbjct: 94 ARTPTSGPS 102
Score = 37.5 bits (87), Expect = 0.006
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 1874 GVLAYVL--DVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
G Y++ A + V P ++ L G DYE V++ S+
Sbjct: 34 GATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Score = 30.6 bits (69), Expect = 1.7
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 5/59 (8%)
Query: 1621 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
P A T ++ L W + Y+V S + +
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPE 62
Score = 28.3 bits (63), Expect = 9.2
Identities = 6/44 (13%), Positives = 8/44 (18%), Gaps = 5/44 (11%)
Query: 1143 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRT 1186
PP + L W + Y V
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASP 47
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 85.1 bits (210), Expect = 9e-17
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 1686 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 1745
V + + + +IG+G+FG ++ +T A K V + + E I L
Sbjct: 5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENV--KTKHPQLLYESKIYRILQGG 62
Query: 1746 KLI-NLHDAFEDDDEMVLIFEFL--SGGELFERITAPDYKMSEAEVINYMRQVCEAVKHM 1802
I N+ + D VL+ + L S +LF K+S V+ Q+ V+ +
Sbjct: 63 TGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFC---SRKLSLKTVLMLADQMINRVEFV 119
Query: 1803 HEKNIIHLDVKPENI-MCQTRNSTNVKMIDFGLATK-LDPNEVVKIS-------TGTAEF 1853
H K+ +H D+KP+N M R + V +IDFGLA K D + I TGTA +
Sbjct: 120 HSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARY 179
Query: 1854 A 1854
A
Sbjct: 180 A 180
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 81.9 bits (203), Expect = 1e-16
Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 1656 IVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNI 1715
+ + W + LK +L+ IG G FG V R GN
Sbjct: 5 VAAQDEFYRSGWA------LNMKELK----------LLQTIGKGEFGDVMLGDYR--GNK 46
Query: 1716 FAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA-FEDDDEMVLIFEFLSGGEL-- 1772
A K I + L E +M QL H L+ L E+ + ++ E+++ G L
Sbjct: 47 VAVKCIKNDATAQAFL--AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD 104
Query: 1773 FERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDF 1832
+ R + ++ + VCEA++++ N +H D+ N++ N K+ DF
Sbjct: 105 YLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNV--AKVSDF 161
Query: 1833 GLATKLDPNEVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVL 1876
GL + + T + APE + ++ D+W+ G+L
Sbjct: 162 GLT------KEASSTQDTGKLPVKWTAPEALRE---KKFSTKSDVWSFGIL 203
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A*
2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A*
3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 83.6 bits (207), Expect = 1e-16
Identities = 44/236 (18%), Positives = 92/236 (38%), Gaps = 44/236 (18%)
Query: 1660 RLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAK 1719
+ + + + T++ I + +G G FG V R + K
Sbjct: 33 QTVHEFAK------ELDATNIS----------IDKVVGAGEFGEVCSGRLKLPSK----K 72
Query: 1720 FIPV---------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGG 1770
I V + ++ + E IM Q HP +I L ++++ E++ G
Sbjct: 73 EISVAIKTLKVGYTEKQRRDFLG-EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENG 131
Query: 1771 ELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTN-VKM 1829
L + D + + +++ +R + +K++ + +H D+ NI+ NS K+
Sbjct: 132 SLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI---NSNLVCKV 188
Query: 1830 IDFGLATKLDPNEVVKISTGTAEF----AAPEIVEREPVGFYT---DMWAVGVLAY 1878
DFGL L+ + +T + +PE + +T D+W+ G++ +
Sbjct: 189 SDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAY---RKFTSASDVWSYGIVLW 241
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 81.5 bits (202), Expect = 2e-16
Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 47/235 (20%)
Query: 1662 ISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI 1721
I + + L +E+G+G FG V + +
Sbjct: 6 IRPKEVY------LDRKLLTLED---------KELGSGNFGTVKKGYYQMKK-----VVK 45
Query: 1722 PV----------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGE 1771
V L+ EL+ E ++M QL +P ++ + + + +L+ E G
Sbjct: 46 TVAVKILKNEANDPALKDELLA-EANVMQQLDNPYIVRMI-GICEAESWMLVMEMAELGP 103
Query: 1772 LFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMID 1831
L + + + + +I + QV +K++ E N +H D+ N++ T++ K+ D
Sbjct: 104 LNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQH--YAKISD 160
Query: 1832 FGLATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAVGVLAY 1878
FGL+ L +E + ++ APE I + ++ D+W+ GVL +
Sbjct: 161 FGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK----FSSKSDVWSFGVLMW 211
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET:
ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 82.4 bits (204), Expect = 2e-16
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIMNQLH 1743
+ IG G FG V++ + + K +PV ++ E IM Q
Sbjct: 48 RQKVIGAGEFGEVYKGMLKTSS---GKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 104
Query: 1744 HPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
H +I L M++I E++ G L + + D + S +++ +R + +K++
Sbjct: 105 HHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA 164
Query: 1804 EKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKL-DPNEVVKISTGTAEF----AAPEI 1858
N +H D+ NI+ + K+ DFGL+ L D E ++G + APE
Sbjct: 165 NMNYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEATYTTSG-GKIPIRWTAPEA 221
Query: 1859 VEREPVGFYT---DMWAVGVLAY 1878
+ +T D+W+ G++ +
Sbjct: 222 ISY---RKFTSASDVWSFGIVMW 241
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 81.3 bits (200), Expect = 2e-16
Identities = 36/287 (12%), Positives = 72/287 (25%), Gaps = 67/287 (23%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQ 2083
+ TC + + W +QE Q + + D TF S L + +
Sbjct: 14 VSSTFVLTCS----GSAPVVWERMSQEPPQEMAKAQ-----DGTFSSVLT---LTNLTGL 61
Query: 2084 DT-----------SFDRRQAAPRFV-------------IKPQSAFCYEGQSVKFTCRVIA 2119
DT + + ++ + F E + CRV
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-T 120
Query: 2120 IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVV 2179
+T ++ V + + + + + YI + +
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQ---------RGFSGIFEDRSYICKTTIGDREVDSDA 171
Query: 2180 FLNVQRKYDLPVIHYKNHR---------------RAN-KYDVIWLHNNKEIK-----PSN 2218
+ + + + + N + W + KE ++
Sbjct: 172 YYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTD 231
Query: 2219 DFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
L I EDSG YTC + + + V
Sbjct: 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 74.7 bits (183), Expect = 3e-14
Identities = 25/192 (13%), Positives = 60/192 (31%), Gaps = 11/192 (5%)
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA----GDDYTFYS 2070
+ F E + CRV +T ++ V + + +D ++
Sbjct: 100 AEELFIFLTEITEITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYIC 158
Query: 2071 SLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHN 2130
+ S + + ++ + +G+++ C VI W +
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 2131 NQELKQSVKFMKRYAGDDY-----TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQR 2185
+E + V+ + + D I ++ED G Y ++ +N+
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Query: 2186 KYDLPVIHYKNH 2197
+ H+ +H
Sbjct: 279 -VESGHHHHHHH 289
Score = 68.6 bits (167), Expect = 4e-12
Identities = 29/282 (10%), Positives = 61/282 (21%), Gaps = 78/282 (27%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+ TC + + W +QE Q + + + D GEY
Sbjct: 14 VSSTFVLTCS----GSAPVVWERMSQEPPQEMA-KAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 2167 RAENHYGYREE---VVFLNVQRKYDLPVIHYKNHRRAN----------------KYDVIW 2207
+ G + +++ V + + + V
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTL 128
Query: 2208 LHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV---- 2263
++ + + + Y C+ + E S +
Sbjct: 129 HEKKGDVALP---------VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179
Query: 2264 --------------------------------QVSWYKDGNPVSDDPATYQFTQIGQTYK 2291
W + Y
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 2292 MK----ILSTTLDDVGQYS--AQ--MGGIIAAFSLNV-VKES 2324
++ I S L+D G Y+ + ++N+ V ES
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281
Score = 56.6 bits (136), Expect = 3e-08
Identities = 34/279 (12%), Positives = 78/279 (27%), Gaps = 26/279 (9%)
Query: 1252 HGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
G P+ + + + ++ L T + G+Y + G
Sbjct: 23 SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY--FCTHNDSRGLETDE 80
Query: 1312 KPTDIVQCKEQKR--KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG 1369
+ + + P+ E + +T+ R +V +K G
Sbjct: 81 RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR-------VTDPQLVVTLHEKKG 133
Query: 1370 DWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMD 1429
D ++PVP H G E+ ++ S V +
Sbjct: 134 D----VALPVP-YDHQRGFSGIFEDRSYICKTTIGDREV----DSDAYYVYRLQVSSINV 184
Query: 1430 LSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDS----IIDDSDTRVHKQLTMNSASL 1485
V+ GE+ ++ + W +++ + + L
Sbjct: 185 SVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSIL 244
Query: 1486 VVKNSQRSDGGQYRLQLKNPAGF--DTATLHVRVLDRPH 1522
+ +++ D G Y + D +++ V++ H
Sbjct: 245 HIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283
Score = 52.0 bits (124), Expect = 9e-07
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 9/125 (7%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 307
+ + +++ G+ + + IG W
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSS---INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSG--RDEGSFT 361
T KE T + + ++ + + DSGTY + + +DE +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Query: 362 VTVLE 366
+TV+E
Sbjct: 276 ITVVE 280
Score = 47.8 bits (113), Expect = 2e-05
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 663 IAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW 722
+ + + + + + + +++ G+ + + IG W
Sbjct: 159 KTTIGDREVD---SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 723 TIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
T KE T + + ++ + + DSGTY + + + I
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 47.0 bits (111), Expect = 4e-05
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
+ +G+++ C VI W + +E + V+ + + D
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 2071 SLRKLQIDRFSIQDT 2085
S L I ++D+
Sbjct: 242 S--ILHIPSAELEDS 254
Score = 33.1 bits (75), Expect = 0.85
Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 691 IKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV 750
+ P ++++ + V W +E + + +++
Sbjct: 3 VTPPGPELVLNVSSTFVLT----CSGSAPVVWERMSQEPPQE--MAKAQDGTFSSVLTLT 56
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
N D+G Y ++ G + +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRL 84
Score = 33.1 bits (75), Expect = 0.87
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 276 IKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV 335
+ P ++++ + V W +E + + +++
Sbjct: 3 VTPPGPELVLNVSSTFVLT----CSGSAPVVWERMSQEPPQE--MAKAQDGTFSSVLTLT 56
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
N D+G Y ++ G + +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 75.6 bits (186), Expect = 2e-16
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLN 1283
P++ EV +P+S+ ++W+ P + + Y + E GG ++ P ++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
T+ L G Y V A E G + I
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 75.6 bits (186), Expect = 3e-16
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 1384
P +V T S+ +SW P + Y + + GG+ V +VP +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
T+ LS G +YT V A E P+ +
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISI 96
Score = 74.8 bits (184), Expect = 5e-16
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P K V + ++W P+ S + Y I E G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPM--SSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
I L+ G +Y V A E S I
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 70.2 bits (172), Expect = 2e-14
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 232
P + V + + W P S + Y I G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
++ L G +Y V A + G +P++ R
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINYR 99
Score = 64.4 bits (157), Expect = 2e-12
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
S P L+V TP S +SW P+ S + Y + Y G V +
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAPMS--SSSVYYYRIT-YGETGGNSPVQEFTVPYSSS 60
Query: 1101 -YDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
+ GL Y V A +
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Score = 60.9 bits (148), Expect = 4e-11
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+ S P L+ T +S + W AP + +Y + + V V + +
Sbjct: 4 VSSVPTK-LEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 168
A L G DY V A + + SPI+
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISIN 97
Score = 60.6 bits (147), Expect = 5e-11
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 8/99 (8%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTP 1577
P L SL + W P + + Y + + + V +T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSST- 61
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH 1616
+ L+ G Y V A + + PI +
Sbjct: 62 -ATISGLSPGVDYTITVYAWGEDSAGYMFMY-SPISINY 98
Score = 54.4 bits (131), Expect = 7e-09
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---L 544
S P LEV T S +SW P+ + +Y I + + TV
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQE-FTVPYSSS 60
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTV 580
+ L +Y V A + ++
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
Score = 47.5 bits (113), Expect = 2e-06
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 811 SRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 870
S P +V T S+ +SW P + Y + + GG+ VP
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNS-PVQEFTVPYS 58
Query: 871 VHT 873
T
Sbjct: 59 SST 61
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/65 (20%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
Y I + GG V AT+ L G Y V A
Sbjct: 36 YYRITYGET--GGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYS- 92
Query: 961 PVVAK 965
P+
Sbjct: 93 PISIN 97
Score = 38.6 bits (90), Expect = 0.002
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+V P + ++V + + WD P + + Y++ + T
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGET 44
Score = 37.8 bits (88), Expect = 0.005
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
V P + V +T S+ + W P S + Y + + ++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQ 51
Score = 33.2 bits (76), Expect = 0.17
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 1872 AVGVLAYVLDVAEDTNWRVANDYLVKDP--TYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+ V Y + E ++ V T + L G DY V A
Sbjct: 31 SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Query: 1930 TS 1931
S
Sbjct: 91 YS 92
Score = 31.7 bits (72), Expect = 0.67
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 428 RYIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPL 480
Y I E G ++ TVP T+ GL+ G Y + A
Sbjct: 36 YYRITYGETGGNSPVQEFTVPY--SSSTATISGLSPGVDYTITVYAWGEDSAGYMF 89
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro immune
system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A*
1j89_A* 1j87_A*
Length = 176
Score = 78.0 bits (192), Expect = 2e-16
Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 35/187 (18%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
P+ + P ++G++V TC + WFHN +++ +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------SLN 54
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN-----------HRRAN 2201
I K ED GEY + + E V+L V + L + H N
Sbjct: 55 IVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRN 112
Query: 2202 K--YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSC 2259
Y VI+ + + +K + H + I EDSG Y C + + S
Sbjct: 113 WDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQL-DYESE 163
Query: 2260 TLLVQVS 2266
L + V
Sbjct: 164 PLNITVI 170
Score = 73.0 bits (179), Expect = 1e-14
Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 24/182 (13%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELK---QSVKFMKRYAGD-- 2064
P+ + P ++G++V TC + WFHN + S+ + D
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSG 64
Query: 2065 DYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATP 2123
+Y Q + + + + + +++ + EGQ + C
Sbjct: 65 EYKC-------QHQQVNESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG-YREEVVFLN 2182
+ ++ + + L +Y +++ I +ED G Y + Y E + +
Sbjct: 117 KVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Query: 2183 VQ 2184
V
Sbjct: 169 VI 170
Score = 39.1 bits (91), Expect = 0.006
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNS 1482
P KP + L+ + GE+ ++ F + ++ + ++ +
Sbjct: 2 PQKPKVSLNP-PWNRIFKGENVTLTCNGNNFFEVSSTKWFHN----------GSLSEETN 50
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+SL + N++ D G+Y+ Q + + L V E G L L
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVME--GQPLFL 105
Score = 37.2 bits (86), Expect = 0.023
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWTIDGKELKTD 317
S PV + ++ ++ G+ L + +V + DG+ LK
Sbjct: 73 VNESEPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY- 129
Query: 318 SVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLE 366
SI N DSGTY+ + E +TV++
Sbjct: 130 WYENHNISIT--------NATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171
Score = 35.3 bits (81), Expect = 0.11
Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 1390 SEGEEYTFRVIAVNEAGN----SEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFS 1445
++G + +S PV +E + ++ S V G+
Sbjct: 48 ETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS---AEVVMEGQPLF 104
Query: 1446 IH-VPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN 1504
+ + + ++ + + + ++ + N+ D G Y K
Sbjct: 105 LRCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKV 155
Query: 1505 PAG-FDTATLHVRVLDRP 1521
+++ L++ V+ P
Sbjct: 156 WQLDYESEPLNITVIKAP 173
Score = 33.3 bits (76), Expect = 0.55
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 19/78 (24%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
IF ++ TC ++ + W+ +G+ + ++
Sbjct: 14 NRIFKGENVTLTCNG--------NNFFEVSSTKWFHNGSLSEETNSSLN----------- 54
Query: 2294 ILSTTLDDVGQYSAQMGG 2311
I++ +D G+Y Q
Sbjct: 55 IVNAKFEDSGEYKCQHQQ 72
Score = 32.9 bits (75), Expect = 0.60
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 360
W +G + + + + K DSG Y + + + +
Sbjct: 33 EVSSTKWFHNGSLSEETNSSLNIVNA-----------KFEDSGEYKCQHQQVNESEPVYL 81
Query: 361 TVTVLETISKTNTTTI 376
V + + + +
Sbjct: 82 EVFSDWLLLQASAEVV 97
Score = 32.2 bits (73), Expect = 1.2
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
+V + DG+ LK SI N DSGTY+ + E
Sbjct: 112 NWDVYKVIYYKDGEALKY-WYENHNISIT--------NATVEDSGTYYCTGKVWQLDYE 161
Score = 30.2 bits (68), Expect = 4.6
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 11/67 (16%)
Query: 716 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSF 775
W +G + + + + K DSG Y + + + +
Sbjct: 33 EVSSTKWFHNGSLSEETNSSLNIVNA-----------KFEDSGEYKCQHQQVNESEPVYL 81
Query: 776 TIVPDHL 782
+ D L
Sbjct: 82 EVFSDWL 88
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 80.9 bits (199), Expect = 3e-16
Identities = 34/299 (11%), Positives = 69/299 (23%), Gaps = 61/299 (20%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ P G ++ TC + W +
Sbjct: 9 EPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTFKTYFNEMVE----------- 53
Query: 2067 TFYSSLRKLQIDRFSIQDT--------------SFDRRQAAPRFVIKPQSAFCYEGQSVK 2112
+ + ++ T + + + + F E
Sbjct: 54 ---NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDAL 110
Query: 2113 FTCRVIAIATPTLTWFH-NNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENH 2171
C + + + + L + F + N + R A+
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 2172 YG-YREEVVFLNVQRKYDLPVIHYKNHRRAN------------------KYDVIWLHNNK 2212
+ L V+ + + +WL N
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP 228
Query: 2213 EIKPSNDFAYSSVAH-------VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ + ++S TL I+ +DSGV+ C A N G + + TL V
Sbjct: 229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 68.2 bits (166), Expect = 5e-12
Identities = 25/198 (12%), Positives = 51/198 (25%), Gaps = 22/198 (11%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH-NNQELKQSVKF------------ 2057
+ + F E C + + + + L + F
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN 151
Query: 2058 -MKRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCR 2116
+ Y + + + +A P + S +G + C
Sbjct: 152 VKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCT 211
Query: 2117 VIAIATP-TLTWFHNNQEL-------KQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRA 2168
+ ++T W N + S T I+ +++D G ++ A
Sbjct: 212 IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA 271
Query: 2169 ENHYGYREEVVFLNVQRK 2186
N +G L V K
Sbjct: 272 NNTFGSANVTTTLKVVEK 289
Score = 62.1 bits (150), Expect = 5e-10
Identities = 31/295 (10%), Positives = 65/295 (22%), Gaps = 79/295 (26%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2149
+ P G ++ TC + W +
Sbjct: 9 EPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTFKTYFNEMVE-------NKKN 57
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANK------- 2202
++ + + G Y N +++ V+ L ++ + +
Sbjct: 58 EWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP 114
Query: 2203 ------YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEI-FPEDSGVYTCEAFND---- 2251
+ + + P++ + I + C A D
Sbjct: 115 LTDPQVSQYSLIECDGKSLPTD--LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL 172
Query: 2252 -----------------------------EGESFS-SCT-----LLVQVSWYKDGNPVSD 2276
+G++F+ CT V W K
Sbjct: 173 HSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQH 232
Query: 2277 DPATYQFTQIGQTYKMKILST------TLDDVGQYS--AQ--MGGIIAAFSLNVV 2321
+ + + T +DD G + A G +L VV
Sbjct: 233 IAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 52.4 bits (125), Expect = 7e-07
Identities = 20/165 (12%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 1371 WVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVN------EAGNSEPGKQSGP--VIVEEQ 1422
++ + +P + V N G A + A S + V E
Sbjct: 125 LIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA 184
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFAND------SIIDDSDTRVH 1475
+ +K G+ F++ W + + + +
Sbjct: 185 IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG 244
Query: 1476 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDR 1520
+L + +++ D G + N G T ++V+++
Sbjct: 245 DFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 50.5 bits (120), Expect = 3e-06
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 8/126 (6%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVT 306
A G K + V + + P + P ++K G V
Sbjct: 164 AAQRDGTWLHSDKFTLKVREAIKAI-PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222
Query: 307 WTIDGKELKT--DSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSF 360
W + + + ++ + + DSG + NT G +
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTT 282
Query: 361 TVTVLE 366
T+ V+E
Sbjct: 283 TLKVVE 288
Score = 40.5 bits (94), Expect = 0.004
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 5/116 (4%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-IDGKELKTDSVRTTVTSIGYH 329
K+ + K V + + DGK L TD
Sbjct: 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL-TFVPNPKAGI 147
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVTVLETISKTNTTTISSKNMMYL 384
TI N + + FT+ V E I ++ + +
Sbjct: 148 TIKNVK--RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK 201
Score = 38.9 bits (90), Expect = 0.013
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 7/120 (5%)
Query: 665 VNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTWT 723
G SD + + + P + P ++K G V W
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWL 224
Query: 724 IDGKELKT--DSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + + ++ + + DSG + NT G + T+
Sbjct: 225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 37.0 bits (85), Expect = 0.054
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 31/133 (23%)
Query: 1410 PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDD 1469
PG+ S P I Q ++ V+AG+ S+ D +
Sbjct: 7 PGEPSPPSIHPAQS-----------ELIVEAGDTLSLT------------CIDPDFVRWT 43
Query: 1470 SDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP---PEN 1526
T ++ + + + ++ + G Y N ++++V V D
Sbjct: 44 FKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLP 100
Query: 1527 LHADEFAGDSLTL 1539
L E +
Sbjct: 101 LFGKE--DSDALV 111
Score = 36.2 bits (83), Expect = 0.096
Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 36/198 (18%)
Query: 671 SEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK 730
S+PS + P I ++I++AG + P V WT
Sbjct: 1 SQPSASP------GEPSPPSIHPAQSELIVEAGD----TLSLTCIDPDFVRWTFKT---- 46
Query: 731 TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKK 790
+ + +GTY N S + L+
Sbjct: 47 ----YFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGL 99
Query: 791 SLHP------VLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDS---VTLSWRPPKHDG 841
L ++ C + + D P + +T+ +
Sbjct: 100 PLFGKEDSDALVRCPLTDPQV-SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR 158
Query: 842 G-----ARIKGYIVQKRK 854
A+ G + K
Sbjct: 159 LCVRCAAQRDGTWLHSDK 176
Score = 35.5 bits (81), Expect = 0.19
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 10/113 (8%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ K D + P D +D A + +KN +R+
Sbjct: 99 LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFV---PNPKAGITIKNVKRA 155
Query: 1494 -DGGQYRLQLKNPAG-FDTATLHVRVLDRPHPPENLHADEF-----AGDSLTL 1539
R + + ++V + + E GD+ T+
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV 208
Score = 34.3 bits (78), Expect = 0.43
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 262 SAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRT 321
S P P I ++I++AG + P V WT
Sbjct: 1 SQPSASPGEPSPPSIHPAQSELIVEAGD----TLSLTCIDPDFVRWTFKT--------YF 48
Query: 322 TVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + +GTY N S V V +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRD 90
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 77.7 bits (191), Expect = 4e-16
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 29/180 (16%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQEL----------KQSVKFMKRYAGDDYTFYSSLR 2073
+G +V+ TC + W ++NQ K K R +
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 2074 KLQIDRFSIQD---------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPT 2124
L I I+D + Q + +GQS+ T ++P+
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPS 128
Query: 2125 LTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + Q T +++ +++D G + + E + + V
Sbjct: 129 VQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 76.9 bits (189), Expect = 7e-16
Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 34/181 (18%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD-----------------DY 2149
+G +V+ TC + W ++NQ + G ++
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR---RANKY--- 2203
+I K+ED YI E+ + +V + D ++ ++ +
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQSLTLTLESPPGSSP 127
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V + TL ++++ +DSG +TC ++ + ++V
Sbjct: 128 SVQCRSPRGKNIQGG----------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Query: 2264 Q 2264
Sbjct: 178 L 178
Score = 42.3 bits (99), Expect = 5e-04
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 282 DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSD 341
D + G+ L + ++ P V + +V+ + + D
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL-----------ELQD 154
Query: 342 SGTYHLELRNTSGRDEGSFTVTVL 365
SGT+ + + E + VL
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 39.6 bits (92), Expect = 0.004
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 23/120 (19%)
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAAFWFANDSI----------------IDDSDTRVHKQLT 1479
+ K G+ + W ++ I ++D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 1480 MNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL 1539
+ L++KN + D Y ++++ + + V + H + G SLTL
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANS-DTHLLQ--GQSLTL 117
Score = 37.3 bits (86), Expect = 0.029
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 697 DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSD 756
D + G+ L + ++ P V + +V+ + + D
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL-----------ELQD 154
Query: 757 SGTYHLELRNTSGRDEGSFTIV 778
SGT+ + + E IV
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIV 176
Score = 35.0 bits (80), Expect = 0.15
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 11/87 (12%)
Query: 1435 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1494
D + G+ ++ + P+ + +L V + D
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQC-----------RSPRGKNIQGGKTLSVSQLELQD 154
Query: 1495 GGQYRLQLKNPAGFDTATLHVRVLDRP 1521
G + + + + VL
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 35.0 bits (80), Expect = 0.17
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 27/139 (19%)
Query: 1928 SSTSKERPKFPLHSWLTGDHR---NRTNSINQKNLIKMRDRIRSKYEGWDECVLPLGRLS 1984
+++ K+ +F W + S K K+ DR S+ WD
Sbjct: 18 TASQKKSIQF---HWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD---------- 64
Query: 1985 QYSSLRKLQIDRFSIQD---------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVI 2035
L I I+D + Q + +GQS+ T
Sbjct: 65 --QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESP 122
Query: 2036 AIATPTLTWFHNNQELKQS 2054
++P++ + Q
Sbjct: 123 PGSSPSVQCRSPRGKNIQG 141
Score = 30.7 bits (69), Expect = 3.7
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 17/102 (16%)
Query: 695 LKDIII-KAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV--- 750
+K +++ K G + + + + W + + + +T
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 751 -------------NTKRSDSGTYHLELRNTSGRDEGSFTIVP 779
N K DS TY E+ + + +
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLT 102
Score = 30.7 bits (69), Expect = 4.2
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 18/103 (17%)
Query: 280 LKDIII-KAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV--- 335
+K +++ K G + + + + W + + + +T
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 336 -------------NTKRSDSGTYHLELRNTSGRDE-GSFTVTV 364
N K DS TY E+ + + F +T
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 75.1 bits (185), Expect = 4e-16
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
A F + + E + FTC+ T+TW EL+ S K G
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 2152 VINRTKMEDRGEYIIRAEN 2170
I+ + D Y
Sbjct: 66 TISALEKADSDTYTCDIGQ 84
Score = 71.2 bits (175), Expect = 7e-15
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W E++ S S L I+ + DS YTC+ G++ S LLV
Sbjct: 38 TVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93
Query: 2264 Q 2264
Q
Sbjct: 94 Q 94
Score = 57.3 bits (139), Expect = 6e-10
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
A F + + E + FTC+ T+TW EL+ S K G
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL---- 61
Query: 2069 YSSLRKLQIDRFSIQDT 2085
+L I D+
Sbjct: 62 ---TLRLTISALEKADS 75
Score = 51.2 bits (123), Expect = 1e-07
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQMGGIIAAFSLNV 2320
V+W K + +Q +Q G T ++ I + D Y+ +G + L V
Sbjct: 38 TVTWRKGLLELRASGK-HQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLV 93
Score = 48.1 bits (115), Expect = 1e-06
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 273 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
A L ++ ++ + + P VTW EL+ G H
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRAS---------GKHQ 55
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ T L + D ++T +
Sbjct: 56 P-------SQEGLTLRLTISALEKADSDTYTCDI 82
Score = 47.3 bits (113), Expect = 2e-06
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 21/93 (22%)
Query: 688 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
A L ++ ++ + + P VTW EL+ G H
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRAS---------GKHQ 55
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ T L + D ++T
Sbjct: 56 P-------SQEGLTLRLTISALEKADSDTYTCD 81
Score = 40.0 bits (94), Expect = 8e-04
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 10/93 (10%)
Query: 1434 RDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQ 1491
++ V+ F+ P W + S + + L + +
Sbjct: 16 TNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASG-KHQPSQEGLTLRLTISALE 71
Query: 1492 RSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
++D Y G + + V R P
Sbjct: 72 KADSDTYTCD----IGQAQSRAQLLVQGRRSGP 100
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine kinase,
AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens}
Length = 298
Score = 80.4 bits (199), Expect = 4e-16
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIF---AAKFIPVSHNL-EKELIRKEIDIMNQLHHPKL 1747
IG G FGVV+ A K + + + E +E +M L+HP +
Sbjct: 25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84
Query: 1748 INLHDAFEDDDEMVLI-FEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKN 1806
+ L + + + ++ G+L + I +P + ++I++ QV ++++ E+
Sbjct: 85 LALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQK 144
Query: 1807 IIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGT-AEF----AAPE-IVE 1860
+H D+ N M + VK+ DFGLA + E + A A E +
Sbjct: 145 FVHRDLAARNCMLDESFT--VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQT 202
Query: 1861 REPVGFYT---DMWAVGVL 1876
+T D+W+ GVL
Sbjct: 203 ----YRFTTKSDVWSFGVL 217
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 82.4 bits (204), Expect = 5e-16
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 40/235 (17%)
Query: 1651 PIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRER 1710
++ + + W + LK +L+ IG G FG V R
Sbjct: 172 VMEGTVAAQDEFYRSGWA------LNMKELK----------LLQTIGKGEFGDVMLGDYR 215
Query: 1711 KTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA-FEDDDEMVLIFEFLSG 1769
GN A K I + L E +M QL H L+ L E+ + ++ E+++
Sbjct: 216 --GNKVAVKCIKNDATAQAFL--AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK 271
Query: 1770 GELFERITAPDYKM-SEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVK 1828
G L + + + + ++ + VCEA++++ N +H D+ N++ N K
Sbjct: 272 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNV--AK 329
Query: 1829 MIDFGLATKLDPNEVVKISTGTAEFA----APEIVEREPVGFYT---DMWAVGVL 1876
+ DFGL E + APE + ++ D+W+ G+L
Sbjct: 330 VSDFGLT-----KEASSTQDT-GKLPVKWTAPEALRE---KKFSTKSDVWSFGIL 375
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 79.1 bits (194), Expect = 5e-16
Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 4/190 (2%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
+ + ++ ++ W + +T +Y K + + ++Y +
Sbjct: 36 STLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEIT 95
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
+ L++ + ++ + P +P + + + P PE + ++++ + L
Sbjct: 96 SGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLEL 155
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNE 1404
+W + ++VQ R SV ++ ++ + YTFRV +
Sbjct: 156 NWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVDY-RHKFSLPSVDGQKRYTFRVRSRFN 211
Query: 1405 AGNSEPGKQS 1414
S
Sbjct: 212 PLCGSAQHWS 221
Score = 68.3 bits (166), Expect = 3e-12
Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 23/226 (10%)
Query: 464 YVFRIRTENMYGASEPLDPLFPDKPSPPEGPLE-----VSNVTKESCKLSWRVPVDDGGA 518
+ A L + D S PL V NV +C +W+ +
Sbjct: 9 TILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNC--TWQSSSEPQPT 66
Query: 519 PILHYIIEKMDISRGTW------SDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDT 572
+ + K + +T + + ++ +++ T
Sbjct: 67 NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQAT 126
Query: 573 LETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNP 632
+ P APE T+ E ++L W + ++++Q + +
Sbjct: 127 -----QMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDH 178
Query: 633 YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASD 678
W + + +P + + Y FRV + S+
Sbjct: 179 SWTE--QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222
Score = 61.4 bits (148), Expect = 5e-10
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 13/210 (6%)
Query: 66 LALQWLHIPSPPEGPLKPSNIT-----KSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETG 119
L + S L + N W++ + T++ LHY + D +
Sbjct: 23 FFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKV 82
Query: 120 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 179
+ S T L + + ++ V P + + P P
Sbjct: 83 QKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPEN 142
Query: 180 PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKE 239
T+ + ++L W + +++++ + + S+P +
Sbjct: 143 LTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTE-QSVDYRHKFSLPSVDG 198
Query: 240 GEEYEFRV---IAVNKGGPGEPSKASAPVT 266
+ Y FRV G S+ S P+
Sbjct: 199 QKRYTFRVRSRFNPLCGSAQHWSEWSHPIH 228
Score = 55.2 bits (132), Expect = 6e-08
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 1487 VKNSQRSDGGQYRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTP 1543
++ + + +QL++P T L ++ L P PENL + + L L W
Sbjct: 100 LQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNN 159
Query: 1544 PRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+ ++V+ + WT+ S F + ++ Y FRV
Sbjct: 160 RFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFS-LPSVDGQKRYTFRV 206
Score = 52.9 bits (126), Expect = 4e-07
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P + F + + W + + +T + K N K S Y+ + +
Sbjct: 37 TLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDK-VQKCSHYLFSEEIT 95
Query: 1581 VR----NLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDS 1636
I F V ++ + A + +P AP +E
Sbjct: 96 SGCQLQKKEIHLYQTFVVQLQDPREPRRQA---TQMLKLQNLVIPWAPENLTLHKLSESQ 152
Query: 1637 ISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAH 1674
+ L W+ + ++V+ R D W + S+ +
Sbjct: 153 LELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVDY 187
Score = 48.3 bits (114), Expect = 1e-05
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
P P+ L + ++ L+W + ++V+ W++ S
Sbjct: 136 IPWAPEN-LTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV-DYRHK 190
Query: 1101 YDVFGLETNRQYRFRVRA 1118
+ + ++ ++Y FRVR+
Sbjct: 191 FSLPSVDGQKRYTFRVRS 208
Score = 40.6 bits (94), Expect = 0.004
Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 13/153 (8%)
Query: 1042 PSPPQGPLDVSDITP--ESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSP 1099
+V E + +W+ + + +T + K K S ++ S
Sbjct: 34 SVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSD-NDKVQKCSHYLFSE 92
Query: 1100 AYDVF----GLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWD 1155
E + F V+ ++ P + +P P +
Sbjct: 93 EITSGCQLQKKEIHLYQTFVVQLQDPRE---PRRQATQMLKLQNLVIPWAPENLTLHKLS 149
Query: 1156 TNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ L W+ + + V++R+ +
Sbjct: 150 ESQLELNWNNRFL---NHCLEHLVQYRTDWDHS 179
Score = 36.3 bits (83), Expect = 0.092
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSV 865
P PE + ++++ + L+W + ++VQ R SV
Sbjct: 136 IPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSV 185
Score = 30.5 bits (68), Expect = 6.4
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIR--TENMYGA----SEPLD 481
++++ +W + F++ + K+Y FR+R + G+ SE
Sbjct: 167 EHLVQYRTDWDHSWTEQS-VDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSH 225
Query: 482 PLFPDKPSPPEGP 494
P+ + E P
Sbjct: 226 PIHWGSNTSKENP 238
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 74.8 bits (184), Expect = 5e-16
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 1384
+ P + +T + L+W P R GY++ GG + +P H
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEIL-LPGGITSH 61
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ L Y R+ A+ P
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPP 87
Score = 69.4 bits (170), Expect = 4e-14
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
+AP E +P + L W P GY + GG+ P +
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQEIL-LPGGITSH 61
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+ L Y R+ A+ P +
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 66.7 bits (163), Expect = 4e-13
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + P+ L+ ++TP + L+W P Y++ + + G ++
Sbjct: 1 GSSGSSGLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLS-FHTPGGQTQEILL 54
Query: 1095 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVP 1143
++ + GL + Y R++A + P+ + T + P
Sbjct: 55 PGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVST-SFTTGGLRISGP 102
Score = 64.8 bits (158), Expect = 2e-12
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 587 EPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTD 646
+AP K+ L W P Y++ G + +P T
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQ--EILLPGGITS 60
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
++ L Y R+ A+ P S
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 64.0 bits (156), Expect = 3e-12
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWT-KVSSYVTTPFV 1579
P +L A E + L WT P Y++ + +T+
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITS--H 61
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
++ L ++Y R+ A L P T
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 62.9 bits (153), Expect = 9e-12
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
+ P + L WT P + Y++ G ++ ++P IT+
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEI-LLPGGITSHQ 62
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
+ L Y R+ A+ P S T R P
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPVSTSF-TTGGLRISGP 102
Score = 53.6 bits (129), Expect = 1e-08
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 484 FPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
P LE VT + L+W P Y++ T
Sbjct: 4 GSSGLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGI 58
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ + L Y R++A+ + T+ TT
Sbjct: 59 TSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGL 97
Score = 52.8 bits (127), Expect = 2e-08
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P L+ +T + L W P Y++ + T +
Sbjct: 8 LEAPRD-LEAKEVTPRTALLTWTEPPVR----PAGYLLSFHTPGGQTQEILLPGGITSHQ 62
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPL 159
L YN R++A+ P+
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPV 88
Score = 45.5 bits (108), Expect = 1e-05
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 859
+ P + +T + L+W P R GY++ GG
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQT 49
Score = 42.1 bits (99), Expect = 2e-04
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 900 NGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITT 958
GY++ T GG + + + L T+Y R++A Q L P++T
Sbjct: 36 AGYLLSFH--TPGGQTQEIL--LPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVST 90
Score = 36.7 bits (85), Expect = 0.011
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
++ + L Y R++A P STS
Sbjct: 60 SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 33.2 bits (76), Expect = 0.17
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ + P + + A L W P + GY + F +
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTP 45
Score = 33.2 bits (76), Expect = 0.21
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 453 FTVKGLTEGKKYVFRIRTENMYGASEPLDPLF----PDKPSPPEG 493
+ GL Y R++ P+ F P G
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPSSG 105
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 1621 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1658
AP + + T + L W++P Y++
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLS 41
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 75.2 bits (185), Expect = 5e-16
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWN-PPANHGGRPITGYYVEKRERGGEWLRANN---YPTT 1280
P P + +++ L W PA++ PI G+Y+ R +
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 67
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
++ L+ Y+ ++ NE G + S + C+ + R
Sbjct: 68 RYWHSISHLQPETSYDIKMQCFNEGGESEFSNV---MICETKARSGPSS 113
Score = 62.9 bits (153), Expect = 1e-11
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWR-PPKHDGGARIKGYIVQKRKKGGDWVDAN---SVPVPN 1381
P D + + ++ L W P + I G+ + R D V
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 1382 PVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
H++ +L Y ++ NE G SE S +I E
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 104
Score = 60.6 bits (147), Expect = 6e-11
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWK-PPLNDGGSPITDYII--QKKEKGNPYWMNALEVPANK 644
P E + L W P ++ +PI + I + + N V ++
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 645 TDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
I L Y+ ++ NE G SE S+
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 53.3 bits (128), Expect = 2e-08
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 1039 TDKPSPPQGPLDVS--DITPESCSLSWK-PPLDDGGSPITNYVVEKYESAT---GFWSKL 1092
+ P GP + + L W P + +PI + + + + + K
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 1093 SSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + L+ Y +++ N+ G SE + + G
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN---VMICETKARSGPSSG 114
Score = 52.5 bits (126), Expect = 5e-08
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 1523 PPENLHADEFAGDSLTLYWT-PPRDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTTPF 1578
P D ++ L W P N + I + + N + + K +
Sbjct: 11 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYW 70
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLS 1603
+ +L ++Y+ ++ N+ G S
Sbjct: 71 HSISHLQPETSYDIKMQCFNEGGES 95
Score = 50.9 bits (122), Expect = 1e-07
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 177 PGQPTVTDWGKDHVDLEWT-PPKKDGGSPISQYIIEKKPK----YGPWEKACIVPANITA 231
P + + L+W P + +PI + I +P ++K +V +
Sbjct: 12 PYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-MVEGDRYW 70
Query: 232 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
S+ L+ Y+ ++ N+GG E S + C+
Sbjct: 71 HSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 104
Score = 45.9 bits (109), Expect = 9e-06
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGMTV- 542
P V + + L W +P + PI + I SD +
Sbjct: 5 SSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 543 ---SLFYDVPRLIHRKEYLFRVKAVNSIGES 570
++ + L Y +++ N GES
Sbjct: 65 EGDRYWHSISHLQPETSYDIKMQCFNEGGES 95
Score = 42.5 bits (100), Expect = 1e-04
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVV---EKMDMETGRWVPMGDVSG 129
+ P + +++ L+W P + T I + + + V G
Sbjct: 9 VAGPYI-TFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM-VEG 66
Query: 130 TYTRA--ENLIEGHDYNFRVKAVNKIGES 156
+L Y+ +++ N+ GES
Sbjct: 67 DRYWHSISHLQPETSYDIKMQCFNEGGES 95
Score = 39.0 bits (91), Expect = 0.003
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 814 PDPPEAPKVDRITKDSVTLSWR-PPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
P D + + ++ L W P + I G+ + R D +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 873 TLLSIGYL 880
SI +L
Sbjct: 69 YWHSISHL 76
Score = 35.9 bits (83), Expect = 0.026
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPI- 956
G+ I R + V + ++ L T+Y+ +++ N G S +
Sbjct: 43 GFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMI 102
Query: 957 -TTKEPVV 963
TK
Sbjct: 103 CETKARSG 110
Score = 31.3 bits (71), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 1145 PPGQPQIVDWDTNNAT---LMWDR-PRTDGGSKIQGYKVEFRSTRTATD 1189
P P I D N T L W P ++ + I G+ + +R T + D
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDND 56
Score = 30.9 bits (70), Expect = 1.5
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+ + L Y+ +++ N G S+ S+
Sbjct: 70 WHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 30.1 bits (68), Expect = 2.9
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 429 YIIEMAEYGLDN---WKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLF- 484
+ I DN +K + + ++ L Y +++ N G SE + +
Sbjct: 44 FYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
Query: 485 ----PDKPSP 490
PS
Sbjct: 104 ETKARSGPSS 113
Score = 29.4 bits (66), Expect = 4.4
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 1619 DVP-GAPGAPKGVDSTEDSISLVWSK-PRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1676
P P E +I L W P + +PI + + R D +
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVE 65
Query: 1677 DTSLKYT 1683
++
Sbjct: 66 GDRYWHS 72
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 74.8 bits (184), Expect = 6e-16
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGD-WVDANSVPVPNPVH 1384
PP + T DS+ +SW PP R+ Y + G + SVP
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
T+ +L +Y V A+ AG SE
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEA 89
Score = 72.5 bits (178), Expect = 3e-15
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P + D + ++W PP + Y + ++ VP ++ V
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+PDL +Y V A+ AG SE A+
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 70.2 bits (172), Expect = 2e-14
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 1220 QSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYP 1278
S PS + +P S+ ++W PP + Y++ G ++ + P
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPPLG----RVLHYWLTYAPASGLGPEKSVSVP 57
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
+ T+ DL+ KY V AI AG + T
Sbjct: 58 GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 69.8 bits (171), Expect = 3e-14
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 232
P + D + + WTPP + Y + P G EK+ VP +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
++PDL+ +Y V A+ G E A+
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 66.7 bits (163), Expect = 3e-13
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + SPP L ++ TP+S +SW PP + +Y + Y A+G + S
Sbjct: 1 GSSGSSGRSPPSN-LALASETPDSLQVSWTPP----LGRVLHYWLT-YAPASGLGPEKSV 54
Query: 1095 FVRSPA--YDVFGLETNRQYRFRVRAENQYGVSEPLE 1129
V + L+ +YR V A G SE +
Sbjct: 55 SVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVS 91
Score = 60.5 bits (147), Expect = 6e-11
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTP 1577
PP NL DSL + WTPP + +Y + + K V +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVPGARSH- 62
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTI 1609
V + +L + Y V A G S+
Sbjct: 63 -VTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 59.0 bits (143), Expect = 2e-10
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
SPP L ++ T S + W P +LHY + V G +
Sbjct: 7 GRSPPSN-LALASETPDSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPL 159
+L Y V A+ G S +
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAV 90
Score = 55.9 bits (135), Expect = 2e-09
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---L 544
SPP L +++ T +S ++SW P+ +LHY + S + ++V
Sbjct: 8 RSPPSN-LALASETPDSLQVSWTPPLG----RVLHYWLTYAPASGLGPEKS-VSVPGARS 61
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+P L +Y V A+ + G S+ + T T
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACP 99
Score = 45.9 bits (109), Expect = 7e-06
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTK 959
Y + G G +V+ V H T+P L T Y V A G SE ++
Sbjct: 37 HYWLTYAP-ASGLGPEKSVS-VPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 45.1 bits (107), Expect = 1e-05
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
PP + T DS+ +SW PP R+ Y + G SV VP
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLG-PEKSVSVPGARSH 62
Score = 35.1 bits (81), Expect = 0.043
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ L Y V A AAG S+ S +
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 34.3 bits (79), Expect = 0.078
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 1619 DVPGAPGAPKGV---DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
P + T DS+ + W+ P + Y + S K
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEK 52
Score = 33.6 bits (77), Expect = 0.17
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ PP + ++ + W P ++ Y + +
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPA 45
Score = 33.2 bits (76), Expect = 0.19
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 427 SRYIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
Y + A + +VPG + T+ L KY + G SE +
Sbjct: 36 LHYWLTYAPASGLGPEKSVSVPG--ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Query: 484 FP-DKPSPP 491
PS P
Sbjct: 94 GQTACPSGP 102
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein,
skeletal muscle fast- isoform, MYBPCF, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 74.3 bits (183), Expect = 7e-16
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA----GD 2147
V + + G V+ V + + W N EL + F RY G
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 2148 DYTFVINRTKMEDRGEYIIRAEN 2170
+ + + EDRG Y +
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNG 88
Score = 63.5 bits (155), Expect = 4e-12
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 2204 DVIWLHNNKEIKPSNDFAY----SSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSC 2259
V+W+ N E+ + F H L +++ ED G Y +
Sbjct: 38 QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ----CEA 93
Query: 2260 TLLVQ 2264
L+V+
Sbjct: 94 ELIVE 98
Score = 54.6 bits (132), Expect = 5e-09
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
V + + G V+ V + + W N EL + F RY +
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARY---RFKK 62
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L +D
Sbjct: 63 DGKRHILIFSDVVQEDR 79
Score = 49.6 bits (119), Expect = 3e-07
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 17/93 (18%)
Query: 274 PKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
I TPL+D + G + VE+ E +V W +G EL +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKARYRF----- 60
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ D + L + D G + V
Sbjct: 61 -------KKDGKRHILIFSDVVQEDRGRYQVIT 86
Score = 48.5 bits (116), Expect = 8e-07
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 689 PKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
I TPL+D + G + VE+ E +V W +G EL +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKARYRF----- 60
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ D + L + D G + ++
Sbjct: 61 -------KKDGKRHILIFSDVVQEDRGRYQVI 85
Score = 48.1 bits (115), Expect = 1e-06
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDP---ATYQFTQIGQTYKMKILSTTLDDVGQ 2304
G+ + + QV W K+G ++ + A Y+F + G+ + + +D G+
Sbjct: 22 VGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81
Query: 2305 YSAQMGGIIAAFSLNV 2320
Y G L V
Sbjct: 82 YQVITNGGQCEAELIV 97
Score = 37.3 bits (87), Expect = 0.007
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 1425 KPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSD---TRVHKQLT 1479
PV+ ++ + D V G+ ++ V + W N + D R +
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 1480 MNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
L+ + + D G+Y++ A L V
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVITNGGQC--EAELIV 97
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens}
PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A*
3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A*
3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A*
...
Length = 298
Score = 79.6 bits (197), Expect = 7e-16
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 30/204 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
E IG G FG V+ K I + + E IM
Sbjct: 29 FNEVIGRGHFGCVYHGTLLDNDG----KKIHCAVKSLNRITDIGEVSQFLT-EGIIMKDF 83
Query: 1743 HHPKLINLHDA-FEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
HP +++L + +++ ++ G+L I + + ++I + QV + +K+
Sbjct: 84 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 143
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA-----AP 1856
+ K +H D+ N M + + VK+ DFGLA + E + T A
Sbjct: 144 LASKKFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMAL 201
Query: 1857 E-IVEREPVGFYT---DMWAVGVL 1876
E + + +T D+W+ GVL
Sbjct: 202 ESLQTQ----KFTTKSDVWSFGVL 221
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 77.5 bits (190), Expect = 8e-16
Identities = 33/207 (15%), Positives = 53/207 (25%), Gaps = 24/207 (11%)
Query: 74 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 129
LKP + S N L+W+ R G + Y V+ +W D G
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWG 60
Query: 130 TYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 184
T +E Y RV+A + S + + P P
Sbjct: 61 TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQV 118
Query: 185 WGKDHVDLEW--TPPKKDGGSPIS-------QYIIEKKPKYGPWEKACIVPANITATSVP 235
G V L P + +S Y + ++ + A +
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINN-SLEKEQKVYEGAHRAVEIE 177
Query: 236 DLKEGEEYEFRVIAVNK--GGPGEPSK 260
L Y + S+
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDRRSQRSE 204
Score = 75.2 bits (184), Expect = 6e-15
Identities = 31/213 (14%), Positives = 54/213 (25%), Gaps = 22/213 (10%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRA---NNYPTT 1280
P + + + ++ L W P G + Y+V+ + G +W
Sbjct: 7 ESLKPQRVQFQSRNFHNI-LQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKD 1340
+ + T Y RV A + + S E K DPP
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWE--TKIDPPVMNITQVNGSL 122
Query: 1341 SVTLSWRPPKHDGGARIK----------GYIVQKRKKGGDWVDANSVPVPNPVHTVGNLS 1390
V L P + K Y V + + + + L+
Sbjct: 123 LVILHA-PNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEK-EQKVYEGAHRAVEIEALT 180
Query: 1391 EGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
Y + ++S E P
Sbjct: 181 PHSSYCVVAEIYQPMLD-RRSQRS-EERCVEIP 211
Score = 70.2 bits (171), Expect = 3e-13
Identities = 34/209 (16%), Positives = 57/209 (27%), Gaps = 31/209 (14%)
Query: 487 KPSPPEGPLEVSNVTKES----CKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAG--- 539
+ P+ V +S L W+ P Y ++ + W +
Sbjct: 7 ESLKPQ------RVQFQSRNFHNILQWQ-PGRALTGNSSVYFVQYKIYGQRQWKNKEDCW 59
Query: 540 MTVSLFYDVPRLI--HRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK 597
T L D+ ++ Y RV+A ++ S+ T + T +P P +
Sbjct: 60 GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQ 117
Query: 598 DWGEDFVDL----AWKPPLNDGGSPITD-----YIIQKKEKGNPYWMNALEVPANKTDVK 648
G V L + I D Y + E V+
Sbjct: 118 VNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEG--AHRAVE 175
Query: 649 IPDLTKGQEYEFRVIAVNEA--GPSEPSD 675
I LT Y S+ S+
Sbjct: 176 IEALTPHSSYCVVAEIYQPMLDRRSQRSE 204
Score = 62.5 bits (151), Expect = 1e-10
Identities = 26/162 (16%), Positives = 44/162 (27%), Gaps = 21/162 (12%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSS--YVTTPF-- 1578
P+ + + L W P R G + Y V+ K Y W
Sbjct: 10 KPQRVQF-QSRNFHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWGTQELSCD 67
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSIS 1638
+ I Y RV A + S+ ++T + P + S+
Sbjct: 68 LTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWW---ETKIDPPVMN-ITQVNGSLL 123
Query: 1639 LVWSKPRHDGGSPIQR-----------YIVEKRLISDDKWIK 1669
++ P ++ Y V S +K K
Sbjct: 124 VILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK 165
Score = 60.6 bits (146), Expect = 6e-10
Identities = 27/215 (12%), Positives = 50/215 (23%), Gaps = 46/215 (21%)
Query: 1141 TVPDPPGQPQIVDWDTNNA--TLMWDRPRTDGGSKIQGYKVEFRSTR------------- 1185
+PQ V + + N L W R Y V+++
Sbjct: 3 QSTHESLKPQRVQFQSRNFHNILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGT 61
Query: 1186 TATDCGLGYQ----------QCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVT 1235
C L + + A + + W R ++ DPP
Sbjct: 62 QELSCDLTSETSDIQEPYYGRVRAASAGS-YSEWSMTPRFTPWWETKIDPPVMNITQVNG 120
Query: 1236 GYSPSSVSLAWNPPANHGGRPIT-----------GYYVEKRERGGEWLRANNYPTTNLNF 1284
S+ + + P Y V E + Y +
Sbjct: 121 -----SLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQ-KVYEGAHRAV 174
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQC 1319
+ L Y + S+ ++ +C
Sbjct: 175 EIEALTPHSSYCVVAEIYQP-MLDRRSQRSE-ERC 207
Score = 55.9 bits (134), Expect = 2e-08
Identities = 22/159 (13%), Positives = 38/159 (23%), Gaps = 23/159 (14%)
Query: 427 SRYIIEMAEYGLDNWKTVPG-------FCPKEFFTVKGLTEGKKYVFRIRTENMYGASE- 478
S Y ++ YG WK C T + + Y R+R + SE
Sbjct: 38 SVYFVQYKIYGQRQWKNKEDCWGTQELSCD---LTSETSDIQEPYYGRVRAASAGSYSEW 94
Query: 479 -PLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI-----------LHYIIE 526
P + + P+ S + P L Y +
Sbjct: 95 SMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVF 154
Query: 527 KMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVN 565
++ S ++ L Y +
Sbjct: 155 IINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQ 193
Score = 49.0 bits (116), Expect = 5e-06
Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 14/183 (7%)
Query: 587 EPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---VPAN 643
E P++ + + L W+P + Y +Q K G W N +
Sbjct: 7 ESLKPQRVQFQSRNFHNI-LQWQPG-RALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAG 703
D+ + Y RV A + SE S + + P + I +
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMN-----ITQVN 119
Query: 704 KILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLE 763
L V + P K + + + + K + +E
Sbjct: 120 GSLLVILH----APNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVE 175
Query: 764 LRN 766
+
Sbjct: 176 IEA 178
Score = 48.2 bits (114), Expect = 7e-06
Identities = 26/158 (16%), Positives = 40/158 (25%), Gaps = 17/158 (10%)
Query: 1039 TDKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-- 1095
T P V L W+P + Y V+ W
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNILQWQPG-RALTGNSSVYFVQYKIYGQRQWKNKEDCWG 60
Query: 1096 VRSPAYDV--FGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVD 1153
+ + D+ + Y RVRA + SE T DPP
Sbjct: 61 TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWW--ETKIDPPVMNITQV 118
Query: 1154 WDTNN----ATLMWDRPRTDGGSKIQ-----GYKVEFR 1182
+ A + R + + I+ Y+V
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII 156
Score = 45.5 bits (107), Expect = 6e-05
Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 6/106 (5%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANS---VPVP 1380
+ P+ + L W+P + G Y VQ + G W +
Sbjct: 7 ESLKPQRVQFQ-SRNFHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 1381 NPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ T E Y RV A + SE E P
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110
Score = 32.8 bits (74), Expect = 0.85
Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 12/76 (15%)
Query: 1534 GDSLTLYWTPPRDNGGSEITN-----------YVVEKKDYNSTVWTKVSSYVTTPFVRVR 1582
SL + P + Y V + + KV +
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVE-IE 177
Query: 1583 NLAIGSTYEFRVMAEN 1598
L S+Y
Sbjct: 178 ALTPHSSYCVVAEIYQ 193
Score = 32.1 bits (72), Expect = 1.8
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 1836 TKLDPNEVVKISTGTA---EFAAPEIVEREPVGFYTDMWAVGVLAYVLDVAEDTNWRVAN 1892
TK+DP + + AP + R + L Y + + ++ +
Sbjct: 106 TKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK 165
Query: 1893 DYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
Y + +L Y + + S S+ER
Sbjct: 166 VYEGAHRAVEIEALTPHSSYCVVAEIYQ-PMLDRRSQRSEER 206
Score = 30.5 bits (68), Expect = 5.8
Identities = 10/110 (9%), Positives = 21/110 (19%), Gaps = 12/110 (10%)
Query: 1022 SVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN----- 1076
+ S + R + P+ S + P
Sbjct: 85 AASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIE 144
Query: 1077 ------YVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAEN 1120
Y V ++ K+ ++ L + Y
Sbjct: 145 DYYELLYRVFIINNSLEKEQKVYEGAHRA-VEIEALTPHSSYCVVAEIYQ 193
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 78.0 bits (191), Expect = 8e-16
Identities = 41/213 (19%), Positives = 61/213 (28%), Gaps = 21/213 (9%)
Query: 73 IPSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 128
+P G KP+NIT S N L+W P G + Y V+ +W+ +
Sbjct: 2 VPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECR 60
Query: 129 GTYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 183
AE H Y RV+A+ S + P P T
Sbjct: 61 NINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP--PEVALTT 118
Query: 184 DWGKDHVDLE--WTPPKKDGGSPISQYIIEKKPKY------GPWEKACIVPANITATSVP 235
D V L + P+S I KY + +
Sbjct: 119 DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLT 178
Query: 236 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
L+ Y V + G P ++ S +
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR-RAQPSEKQCAR 210
Score = 75.3 bits (184), Expect = 6e-15
Identities = 30/198 (15%), Positives = 53/198 (26%), Gaps = 16/198 (8%)
Query: 1241 SVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRAN---NYPTTNLNFTVHDLREGGKYE 1296
L W PP G +T Y V+ +WL + N T + + +Y
Sbjct: 23 KNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYY 81
Query: 1297 FRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGAR 1356
RV AI K ++ E + P ++ +T + ++
Sbjct: 82 ARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLP 141
Query: 1357 IK--------GYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNS 1408
+ Y V + S V N + L Y V +
Sbjct: 142 VSMQQIYSNLKYNVSVLNTKSNRT--WSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPP- 198
Query: 1409 EPGKQSGPVIVEEQPNKP 1426
+ S ++
Sbjct: 199 RRAQPSEKQCARTLKDQS 216
Score = 64.9 bits (157), Expect = 2e-11
Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF---- 1578
P N+ L WTPP G ++T Y V+ Y W S
Sbjct: 11 KPANITFLSI-NMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSIS 1638
+ Y RV A SK A + P + + E SIS
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEV----ALTTDEKSIS 124
Query: 1639 LVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
+V + P +P + +++ S+ K+
Sbjct: 125 VVLTAPEKWKRNPEDLPVSMQQIYSNLKY 153
Score = 64.5 bits (156), Expect = 3e-11
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 23/196 (11%)
Query: 499 NVTKES----CKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAG---MTVSLFYDVPRL 551
N+T S L W P G + Y ++ + W + + D+
Sbjct: 14 NITFLSINMKNVLQWTPPEGLQG-VKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAE 72
Query: 552 I--HRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWK 609
+ +Y RV+A+ S E+ + P T + + K
Sbjct: 73 TSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEK 132
Query: 610 PPLNDGGSPITD--------YIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFR 661
N P++ Y + + + + L Y
Sbjct: 133 WKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTW---SQCVTNHTLVLTWLEPNTLYCVH 189
Query: 662 VIAVNEA--GPSEPSD 675
V + ++PS+
Sbjct: 190 VESFVPGPPRRAQPSE 205
Score = 51.8 bits (123), Expect = 6e-07
Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 21/182 (11%)
Query: 590 APEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---VPANKTD 646
P T V L W PP G +T Y +Q G W+N E + D
Sbjct: 11 KPANITFLSINMKNV-LQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
+ +Y RV A+ S+ +++ + + P + K +
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVA-----LTTDEKSI 123
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
+V + P + + + S++ +++ Y+ V + T+ + N
Sbjct: 124 SVVLT----APEKWKRNPEDLPV---SMQQIYSNLKYNVSV----LNTKSNRTWSQCVTN 172
Query: 767 TS 768
+
Sbjct: 173 HT 174
Score = 47.2 bits (111), Expect = 2e-05
Identities = 19/158 (12%), Positives = 38/158 (24%), Gaps = 21/158 (13%)
Query: 428 RYIIEMAEYGLDNWKTVPGFC-----PKEFFTVKGLTEGKKYVFRIRTENMYGASEP--L 480
Y ++ YG W C + + +Y R+R S+
Sbjct: 40 TYTVQYFIYGQKKWLNKSE-CRNINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAES 98
Query: 481 DPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI------------LHYIIEKM 528
+P + P ++S + P P L Y + +
Sbjct: 99 GRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVL 158
Query: 529 DISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNS 566
+ + + L Y V++
Sbjct: 159 NTKSNRTWSQ-CVTNHTLVLTWLEPNTLYCVHVESFVP 195
Score = 47.2 bits (111), Expect = 2e-05
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLS--SFVRSPAYDV--FGLETNRQYRFRV 1116
L W PP G +T Y V+ + W S + D+ + QY RV
Sbjct: 26 LQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARV 84
Query: 1117 RAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQI-VDWDTNNATLMWDRPRTDGGSKIQ 1175
RA S+ + + +F + G P++ + D + +++ P +
Sbjct: 85 RAIWGTKCSKW-----AESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPED 139
Score = 46.8 bits (110), Expect = 3e-05
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANS---VPVPNPV 1383
P L W PP+ G ++ Y VQ G W++ + +
Sbjct: 11 KPANITFL-SINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ +Y RV A+ S+ + E P
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP 111
Score = 45.6 bits (107), Expect = 7e-05
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 27/183 (14%)
Query: 188 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 243
L+WTPP+ Y ++ NI T S +Y
Sbjct: 22 MKNVLQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQY 80
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
RV A+ + +++ + P + K ++V + P
Sbjct: 81 YARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVA-----LTTDEKSISVVLT----APE 131
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+ + + S++ +++ Y+ V + T+ + N + +T
Sbjct: 132 KWKRNPEDLPV---SMQQIYSNLKYNVSV----LNTKSNRTWSQCVTNH------TLVLT 178
Query: 364 VLE 366
LE
Sbjct: 179 WLE 181
Score = 33.3 bits (75), Expect = 0.76
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 1620 VPGAPGAPKGV--DSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASM-AHIP 1676
V G P + S L W+ P G + Y V+ + KW+ S +I
Sbjct: 5 VSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECRNIN 63
Query: 1677 DTSLKYTSSVYDHY 1690
T ++ D+
Sbjct: 64 RTYCDLSAETSDYE 77
Score = 31.0 bits (69), Expect = 3.5
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 1534 GDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWT----------KVSSYVTTPFVRVRN 1583
S+++ T P + V ++ Y++ + S VT + +
Sbjct: 120 EKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTW 179
Query: 1584 LAIGSTYEFRVMAEN 1598
L + Y V +
Sbjct: 180 LEPNTLYCVHVESFV 194
Score = 30.2 bits (67), Expect = 7.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANS 864
P L W PP+ G ++ Y VQ G W++ +
Sbjct: 11 KPANITFL-SINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSE 58
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 139
Score = 75.2 bits (184), Expect = 9e-16
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 30/129 (23%)
Query: 1421 EQPNKPVMDLSGV--RDITVKAGEDFSIHVPFMAFPQPAAFWF----------------- 1461
++P K +D G I V AG + VP P P W
Sbjct: 11 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 1462 -----------ANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDT 1510
+ ++ +++ RV + T + + V+ +++ D G Y + +KNP G D
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 1511 ATLHVRVLD 1519
L V+V+D
Sbjct: 131 VNLTVKVID 139
Score = 71.7 bits (175), Expect = 2e-14
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 28/131 (21%)
Query: 264 PVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT--------------- 308
P+ I++ AG L +++ G+P P V W
Sbjct: 9 SRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAP 68
Query: 309 -------------IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGR 355
D K L R V + +I ++ D G Y + ++N G
Sbjct: 69 DAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 128
Query: 356 DEGSFTVTVLE 366
D+ + TV V++
Sbjct: 129 DQVNLTVKVID 139
Score = 60.1 bits (145), Expect = 2e-10
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 33/128 (25%)
Query: 683 KQRFLAPKIKTPL-----KDIIIKAGKILNVEIQFIGEPPPEVTWT-------------- 723
R PKI I++ AG L +++ G+P P V W
Sbjct: 8 SSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPA 67
Query: 724 --------------IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG 769
D K L R V + +I ++ D G Y + ++N G
Sbjct: 68 PDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 127
Query: 770 RDEGSFTI 777
D+ + T+
Sbjct: 128 EDQVNLTV 135
Score = 49.7 bits (118), Expect = 8e-07
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 34/128 (26%)
Query: 2090 RQAAPRFVI-----KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY 2144
RQ P+ + P + G ++ + PT+ W + ++
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 69
Query: 2145 A-----------------------------GDDYTFVINRTKMEDRGEYIIRAENHYGYR 2175
A D F + + ED G Y + +N G
Sbjct: 70 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 129
Query: 2176 EEVVFLNV 2183
+ + + V
Sbjct: 130 QVNLTVKV 137
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 74.4 bits (183), Expect = 1e-15
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF-MKRYAGDD 2148
+ + + EG S F CR+ + WF + L + + G
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 2149 YTFVINRTKMEDRGEYIIRAEN 2170
+ + + ++D G A +
Sbjct: 70 HVLTLRQLALKDSGTIYFEAGD 91
Score = 62.8 bits (153), Expect = 1e-11
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSS-VAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
V W + + + + H L + ++ +DSG EA G+ +S L
Sbjct: 44 PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR 99
Query: 2263 VQ 2264
V
Sbjct: 100 VT 101
Score = 61.3 bits (149), Expect = 4e-11
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS 318
S +S V + I L+D+ ++ G + V W +D L +
Sbjct: 3 SGSSGLVQGRR----VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
Query: 319 -VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
GYH + DSGT + E +G S + V E
Sbjct: 59 LNEIDAQPGGYHVLT-LRQLALKDSGTIYFE----AGDQRASAALRVTE 102
Score = 55.5 bits (134), Expect = 4e-09
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS-VRTTVTSIGYHTI 746
I L+D+ ++ G + V W +D L + GYH +
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72
Query: 747 VNTVNTKRSDSGTY 760
DSGT
Sbjct: 73 T-LRQLALKDSGTI 85
Score = 55.5 bits (134), Expect = 4e-09
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF 2057
+ + + EG S F CR+ + WF + L +
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Score = 50.9 bits (122), Expect = 2e-07
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQMGGIIAAFSLNV 2320
V W+ D P+ + Q G + + + L D G + G A+ +L V
Sbjct: 44 PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAALRV 100
Score = 46.6 bits (111), Expect = 4e-06
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 1411 GKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDS 1470
G +V+ + + DL D+ V+ G + WF + + + +
Sbjct: 1 GSSGSSGLVQGRRVHIIEDL---EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN 57
Query: 1471 DTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ L ++ D G + AG A+ +RV ++P
Sbjct: 58 ELNEIDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 74.0 bits (182), Expect = 1e-15
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 1325 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 1384
PD P + +T+ L W+PP+ + Y +Q G + A P +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ +L YT V + + P
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSP 87
Score = 72.9 bits (179), Expect = 3e-15
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
PD P+Q + L W PP N P+ Y ++ G L+A P + +++
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
+HDL Y V + P+ T + P + +T +
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITFTT-------GLEAPRDLEAKEVTPSGPS 113
Score = 72.5 bits (178), Expect = 4e-15
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + P P L ++T L WKPP +P+ Y ++ + + +
Sbjct: 1 GSSGSSGPDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQ-VTAPGAPPLQAET 54
Query: 1095 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDW 1154
+ Y + L + Y VR ++ P + F T + P + +
Sbjct: 55 PGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSP------ASITFT-TGLEAPRDLEAKEV 107
Query: 1155 DTNNAT 1160
+ +
Sbjct: 108 TPSGPS 113
Score = 68.6 bits (168), Expect = 1e-13
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
PD P + + E F L WKPP +P+ Y IQ G P E P + D
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPL--QAETPGSAVDY 61
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ DL Y V + + P+ +
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASIT 91
Score = 63.2 bits (154), Expect = 7e-12
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 173 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 232
PD P Q + + L W PP+ +P+ Y I+ P +A P +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
+ DL Y V + P+ +
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITF 92
Score = 62.5 bits (152), Expect = 2e-11
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 1520 RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 1579
P P L A L+W PP+ + + Y ++ + + +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPALT 1608
+ +L + + Y V L+ PA
Sbjct: 63 -LHDLVLHTNYTATVRGLRGPNLTSPASI 90
Score = 56.7 bits (137), Expect = 2e-09
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFY 546
P P L N+T+ L W+ P P+ Y I+ ++ Y
Sbjct: 7 GPDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDY 61
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKD 598
+ L+ Y V+ + + T TT +AP K+
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITFTT-------GLEAPRDLEAKE 106
Score = 52.8 bits (127), Expect = 3e-08
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P P L+ N+T+ L W+ P++ + Y ++ S
Sbjct: 8 PDGPTQ-LRALNLTEGFAVLHWKPPQNP----VDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPL 159
+L+ +Y V+ + + P
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPA 88
Score = 49.0 bits (117), Expect = 8e-07
Identities = 22/147 (14%), Positives = 33/147 (22%), Gaps = 62/147 (42%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
PD P + +T+ L W+PP+ + Y +Q G + A P +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61
Query: 873 TLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVP 932
L DL
Sbjct: 62 PL--------------------------------HDLVLH-------------------- 69
Query: 933 RLLEGTTYEFRVRAENLQGLSEPITTK 959
T Y VR L+ P +
Sbjct: 70 -----TNYTATVRGLRGPNLTSPASIT 91
Score = 42.8 bits (101), Expect = 1e-04
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 428 RYIIEMAEYGLDNW-KTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPD 486
Y I++ G PG + + L Y +R + P F
Sbjct: 37 TYDIQVTAPGAPPLQAETPG--SAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTT 94
Query: 487 KPSPPEGPLEVSNVTKES 504
P LE VT
Sbjct: 95 GLEAPR-DLEAKEVTPSG 111
Score = 34.3 bits (79), Expect = 0.11
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
+ PD P Q + ++ A L W P+ + + Y ++ +
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPP 49
Score = 33.2 bits (76), Expect = 0.21
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
Y +H L+ +Y V+ + P+S +
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASIT 91
Score = 31.3 bits (71), Expect = 0.99
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
P P + ++ TE L W P+ +P+ Y ++ A P ++
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ----AETPGSA 58
Query: 1680 LKYT 1683
+ Y
Sbjct: 59 VDYP 62
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 73.7 bits (181), Expect = 1e-15
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
+ ++ P + L W Y + + EW +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEW----HQMVLEPRV 64
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
+ L+ Y RV + GPG S +
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF 96
Score = 67.1 bits (164), Expect = 2e-13
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
+ K+ + + L+W + Y + + +W V P
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEW----HQMVLEPRVL 65
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ L Y RV + G PG S P
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLG---PGPFSPDHEFRTSP 100
Score = 58.6 bits (142), Expect = 2e-10
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 7/94 (7%)
Query: 588 PDAPEKPTVK--DWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
++ ++K ++L W Y + + + LE
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLE-----P 62
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDI 679
V + L Y RV + GP S +
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF 96
Score = 58.6 bits (142), Expect = 2e-10
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
+ S L + P L+W +Y + + V
Sbjct: 6 SGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQD----EEWHQMVLE 61
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYG 1123
P + L+ + Y RVR G
Sbjct: 62 PRVLLTKLQPDTTYIVRVRTLTPLG 86
Score = 50.9 bits (122), Expect = 1e-07
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
+ ++L W + Y + + +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL----HV--LNQDEEWHQMVLEPR 63
Query: 234 --VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
+ L+ Y RV + GPG S T P
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPS 102
Score = 49.0 bits (117), Expect = 6e-07
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
+L + L L W R +Y + + + + V P V
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDE----EWHQMVLEPRVL 65
Query: 1581 VRNLAIGSTYEFRVMAENQYG 1601
+ L +TY RV G
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLG 86
Score = 45.9 bits (109), Expect = 7e-06
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
S LK L W R L Y + ++ + V
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ---MVLEPRVL 65
Query: 134 AENLIEGHDYNFRVKAVNKIGES 156
L Y RV+ + +G
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPG 88
Score = 41.3 bits (97), Expect = 3e-04
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII---EKMDISRGTWSDAGMTVSL 544
S L++ +L+W L Y + + + + + ++
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLT- 67
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGES 570
+L Y+ RV+ + +G
Sbjct: 68 -----KLQPDTTYIVRVRTLTPLGPG 88
Score = 40.9 bits (96), Expect = 5e-04
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 859
+ K+ + + L+W + Y + + +W
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEW 55
Score = 37.5 bits (87), Expect = 0.006
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 1874 GVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKE 1933
G L+Y L V +V +P ++ L Y RV+ G S +
Sbjct: 40 GNLSYELHVLNQDE---EWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF 96
Query: 1934 R 1934
R
Sbjct: 97 R 97
Score = 34.0 bits (78), Expect = 0.11
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
Y + + + + V + + L Y+ R+RT G P P +
Sbjct: 43 SYELHVLNQDEEWHQMVL----EPRVLLTKLQPDTTYIVRVRTLTPLGPG-PFSPDHEFR 97
Query: 488 PSPPEGP 494
SPP GP
Sbjct: 98 TSPPSGP 104
Score = 33.2 bits (76), Expect = 0.23
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 920 NHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPIT 957
H + + +L TTY RVR G S
Sbjct: 55 WHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHE 95
Score = 30.5 bits (69), Expect = 1.6
Identities = 5/42 (11%), Positives = 10/42 (23%), Gaps = 5/42 (11%)
Query: 1622 GAPGAPKGVD-----STEDSISLVWSKPRHDGGSPIQRYIVE 1658
+ G+ + L W+ R Y +
Sbjct: 6 SGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELH 47
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 80.7 bits (198), Expect = 1e-15
Identities = 37/307 (12%), Positives = 73/307 (23%), Gaps = 71/307 (23%)
Query: 1998 SIQDTSFDRRQAAPRFVIKPQSAFCYE-GQSVKFTCRVIAI---ATPTLTWFHNNQELKQ 2053
+ + P + S E C + + + + +Q L
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP 234
Query: 2054 SVKFMKRYAGDDYTFYSSLRKLQIDRF-------------SIQDTSFDRRQAAPRFVIKP 2100
+V Y D ++ +S+ D S + + P +
Sbjct: 235 TV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Query: 2101 QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMED 2160
EG V C A TL G ++ T ++
Sbjct: 291 TKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL------------GPRAQLLLKATPEDN 338
Query: 2161 RGEYIIRAENHYG----YREEVVFLNVQRKYDLPVIHYKNHR-----------------R 2199
+ A ++ + L V P + ++
Sbjct: 339 GRSFSCSATLEVAGQLIHKNQTRELRVLYG---PRLDERDCPGNWTWPENSQQTPMCQAW 395
Query: 2200 AN-KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSS 2258
N ++ L + P + + + G Y C A + +GE
Sbjct: 396 GNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTRE 442
Query: 2259 CTLLVQV 2265
T+ V
Sbjct: 443 VTVNVLS 449
Score = 80.7 bits (198), Expect = 2e-15
Identities = 39/285 (13%), Positives = 69/285 (24%), Gaps = 40/285 (14%)
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH--NNQELKQSVKFMKRYAGDDYTFYSSL 2072
+ P G SV TC L +EL K Y + S
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQP 63
Query: 2073 R-KLQIDRFSIQDTSFDRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIA---IATPTLTW 2127
+F P V + P ++ G+++ C+V A T+
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123
Query: 2128 FHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKY 2187
+ELK+ + T + + + R E + +F N Y
Sbjct: 124 LRGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180
Query: 2188 DLPVIHYKNHRR-------------------------ANKYDVIWLHNNKEIKPSNDFAY 2222
L ++ V ++ + P+
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT--- 237
Query: 2223 SSVAHVHTLKIAEIFPEDSGVY--TCEAFNDEGESFSSCTLLVQV 2265
+ ED G TC + T+ +
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 70.3 bits (171), Expect = 4e-12
Identities = 31/295 (10%), Positives = 76/295 (25%), Gaps = 56/295 (18%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELKQSVKFMKRYAG---- 2063
R + P ++ G+++ C+V A T+ +ELK+ +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146
Query: 2064 -----DDYTFYSSLRKLQIDR------FSIQDTSFDRRQAAPRFVIKPQSAFCYE-GQSV 2111
+S +L + + + P + S E
Sbjct: 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206
Query: 2112 KFTCRVIAI---ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRT-KMEDRGEYIIR 2167
C + + + + +Q L +V Y D ++ + + ED G +
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 2168 AENHYG--YREEVVFLNVQRKYDLPVIHYKNHRRANKYDVI--------------WLHNN 2211
G +E + + + P + + +V +
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ 321
Query: 2212 KEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
+ L + ++ ++C A + ++
Sbjct: 322 PLGPRA------------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364
Score = 59.1 bits (142), Expect = 9e-09
Identities = 62/494 (12%), Positives = 119/494 (24%), Gaps = 102/494 (20%)
Query: 1075 TNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNS- 1133
+ ++ + S ++ + G+ET + + N V E +
Sbjct: 7 SKVILPRGGSVL-----VTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 1134 ------------ITAKFPFTVPDPPGQPQIVDWDTN--------------------NATL 1161
TAK TV P + ++ + N T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 1162 MW---DRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQGR 1218
+ ++ + + +V G + C ++ P G L ++
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFS-CRTELDLRPQGLELFENTSAPY 180
Query: 1219 IQSPFDPPDAPSQPEVTGYSP--SSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRAN- 1275
F P P Q + ++ + G P++ V G + L
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD---GLFPVSEAQV-HLALGDQRLNPTV 236
Query: 1276 --NYPTTNLNFTVHDLRE-GGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ + +V E G I + + I PE
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS 296
Query: 1333 KVDRIT-------KDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
+ +T + VTL+ P P
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVP--------------------------AQPLGPRAQLL 330
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGK-QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDF 1444
+ E +F A E K Q+ + V P + + + T
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP--RLDERDCPGNWTWPENSQQ 388
Query: 1445 SIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN 1504
+ P P + + R G Y + ++
Sbjct: 389 TPMCQAWGNPLPELKCLKDGTF--------------PLPIGESVTVTRDLEGTYLCRARS 434
Query: 1505 PAGFDTATLHVRVL 1518
G T + V VL
Sbjct: 435 TQGEVTREVTVNVL 448
Score = 52.9 bits (126), Expect = 9e-07
Identities = 31/157 (19%), Positives = 39/157 (24%), Gaps = 33/157 (21%)
Query: 226 PANITATSVPDLKEGEEYEFRV-------------IAVNKGGPGEPSKASAP---VTCKP 269
A +T VP G + + A + K V P
Sbjct: 310 RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 369
Query: 270 RFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH 329
R + + Q G P PE+ DG TVT
Sbjct: 370 RLD---ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT----- 421
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
R GTY R+T G TV VL
Sbjct: 422 ---------RDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 47.6 bits (112), Expect = 4e-05
Identities = 20/115 (17%), Positives = 26/115 (22%), Gaps = 14/115 (12%)
Query: 664 AVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT 723
A E + + + Q G P PE+
Sbjct: 346 ATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL 405
Query: 724 IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
DG TVT R GTY R+T G T+
Sbjct: 406 KDGTFPLPIGESVTVT--------------RDLEGTYLCRARSTQGEVTREVTVN 446
Score = 39.5 bits (91), Expect = 0.012
Identities = 22/219 (10%), Positives = 45/219 (20%), Gaps = 74/219 (33%)
Query: 2098 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH--NNQELKQSVKFMKRYAGDDYTFVINR 2155
+ P G SV TC L +EL + V
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLP---------GNNRKVYEL 54
Query: 2156 TKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIK 2215
+ +++ + + + G FL V
Sbjct: 55 SNVQEDSQPMCYSNCPDGQSTAKTFLTVYW------------------------------ 84
Query: 2216 PSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS-SCTL-------LVQVSW 2267
PE + ++ G++ + C + + V
Sbjct: 85 ---------------------TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123
Query: 2268 YKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ + +P +L +S
Sbjct: 124 LRGEKELKREP----AVGEPAEVTTTVLVRRDHHGANFS 158
Score = 39.5 bits (91), Expect = 0.014
Identities = 31/215 (14%), Positives = 53/215 (24%), Gaps = 41/215 (19%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 213
G++L L CQ G P TV + +L+ P + +
Sbjct: 101 GKNLTLRCQVE------GGAP--RANLTVV-LLRGEKELKREPAVGEPAEVTT------- 144
Query: 214 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRV-IAVNKGGPGEPSKASAPVTCKPRFV 272
+ G + R + + G SAP + +
Sbjct: 145 --------------TVLVRRDHH---GANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPP-PEVTWTI--DGKELKTDSVRTTVTSIGYH 329
+ +++ V G P E + + L T
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN----PTVTYGNDSF 243
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ +V+ D GT L G TV
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278
Score = 35.6 bits (81), Expect = 0.19
Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 6/152 (3%)
Query: 1392 GEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFM 1451
G ++ R E + + + P V ++ ++
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 1452 -AFPQPAA--FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF 1508
FP A D ++ + T + + + V ++ + +
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA--SVSVTAEDEGTQRLTCAVILGNQS 271
Query: 1509 DTATLHVRVLDRPHPPENLHADEF-AGDSLTL 1539
V + P P L E G +T+
Sbjct: 272 QETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303
Score = 34.1 bits (77), Expect = 0.53
Identities = 28/252 (11%), Positives = 60/252 (23%), Gaps = 26/252 (10%)
Query: 515 DGGAPILHYIIE----KMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGES 570
+GGAP + + + ++ R V+ V R H + R +
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 571 DTLETTKTTVARNEFDEPDAPEKPTVKDWGE--DFVDLAWKPPLNDGGSPITDYIIQKKE 628
+ E T F P P + E + DG P+++ +
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL---DGLFPVSEAQVHLAL 227
Query: 629 KGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLA 688
+ + +T E R+ G + + +
Sbjct: 228 GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI----YSF 283
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
P L + G + V+ + + +
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKA---------- 333
Query: 749 TVNTKRSDSGTY 760
T + ++
Sbjct: 334 ---TPEDNGRSF 342
Score = 32.1 bits (72), Expect = 2.3
Identities = 26/239 (10%), Positives = 55/239 (23%), Gaps = 35/239 (14%)
Query: 139 EGHDYNFRVKAVNKI---GESLPLVCQSPITAK--DPFGRPDRPGQPTVTDWGKDHVDLE 193
+ H NF + + G L +P + P + P V + +
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD-TQGTVV 209
Query: 194 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN---ITATSVPDLKEGEEYEFRVIAV 250
+ DG P+S+ + + A+ ++ +
Sbjct: 210 CSL---DGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVI 266
Query: 251 NKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTID 310
E VT P L + G + V+ + +
Sbjct: 267 LGNQSQE---TLQTVTIY---SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPA 320
Query: 311 GKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTY----HLELRNTSGRDEGSFTVTVL 365
+ T + ++ LE+ + + VL
Sbjct: 321 QPLGPRAQLLLKA-------------TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 73.1 bits (180), Expect = 2e-15
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
A + G++ F + + W Q L S G +
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 2151 FVINRTKMEDRGEYIIRAEN 2170
+++ ++ GE +A N
Sbjct: 62 LILHNCQLGMTGEVSFQAAN 81
Score = 65.8 bits (161), Expect = 5e-13
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W + + S D H L + +G + +A N + S+ L V
Sbjct: 35 HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK----SAANLKV 90
Query: 2264 Q 2264
+
Sbjct: 91 K 91
Score = 52.3 bits (126), Expect = 3e-08
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
GE+ L V W G P++ P + + G+ + + + + L G+ S
Sbjct: 19 VGETAHFEIELSEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHILILHNCQLGMTGEVSF 77
Query: 2308 QMGGIIAAFSLNV 2320
Q +A +L V
Sbjct: 78 QAANTKSAANLKV 90
Score = 50.8 bits (122), Expect = 9e-08
Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
A + G++ F + + W Q L S G +
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L + + T
Sbjct: 62 -------LILHNCQLGMT 72
Score = 48.4 bits (116), Expect = 6e-07
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
+++ PL + + G+ + EI+ + EP W + G+ L + G I+
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHILI 63
Query: 334 TVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
N + +G + + + + V E
Sbjct: 64 LHNCQLGMTGEVSF----QAANTKSAANLKVKE 92
Score = 48.1 bits (115), Expect = 9e-07
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
+++ PL + + G+ + EI+ + EP W + G+ L + G I+
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHILI 63
Query: 749 TVNTKRSDSGTY 760
N + +G
Sbjct: 64 LHNCQLGMTGEV 75
Score = 43.1 bits (102), Expect = 5e-05
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 1425 KPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNS 1482
+ + + V GE F I + + P W + S
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL---SEPDVHGQWKLKGQPLAASP-DCEIIEDGKK 59
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
L++ N Q G+ Q N A L V+ L
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKS--AANLKVKEL 93
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 73.2 bits (180), Expect = 2e-15
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ + F C V + T W+ N E++ S + + G +
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHK 64
Query: 2151 FVINRTKMEDRGEYIIRAEN 2170
VI+ + ED G+Y +
Sbjct: 65 LVIDDVRPEDEGDYTFVPDG 84
Score = 65.5 bits (160), Expect = 1e-12
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W N E++PS S V H L I ++ PED G YT S L
Sbjct: 38 TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNF 95
Query: 2264 Q 2264
Sbjct: 96 L 96
Score = 53.9 bits (130), Expect = 1e-08
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 258 PSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTD 317
S +S ++ + D+ +KA + + + + + W +G E++
Sbjct: 2 SSGSSGQ---------LEVLQDIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRPS 51
Query: 318 SVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
R T++ +G + + + D G Y + S + LE
Sbjct: 52 K-RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFLE 97
Score = 51.6 bits (124), Expect = 7e-08
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ + F C V + T W+ N E++ S + + G
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGR--- 61
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
KL ID +D
Sbjct: 62 ----FHKLVIDDVRPEDE 75
Score = 49.7 bits (119), Expect = 4e-07
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
++ + D+ +KA + + + + + W +G E++ R T++ +G +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRPSK-RITISHVGRFHKL 65
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIVP 779
+ + D G Y + +
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALSLSAKLNFLE 97
Score = 48.2 bits (115), Expect = 1e-06
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1430 LSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVV 1487
L + D+TVKA E F V + + W+ N + S R+ LV+
Sbjct: 12 LQDIADLTVKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSK-RITISHVGRFHKLVI 67
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
+ + D G Y A +A L+ + P
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPS 104
Score = 46.2 bits (110), Expect = 6e-06
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
E C + V WYK+G V + +G+ +K+ I +D G Y+
Sbjct: 22 AAEQAVFKCEVSDEKVTGKWYKNGVEVRPSK-RITISHVGRFHKLVIDDVRPEDEGDYTF 80
Query: 2308 QMGGIIAAFSLNV 2320
G + S +
Sbjct: 81 VPDGYALSLSAKL 93
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 79.0 bits (194), Expect = 2e-15
Identities = 42/321 (13%), Positives = 84/321 (26%), Gaps = 62/321 (19%)
Query: 2002 TSFDRRQAAPRFVIK-PQSAFCYEGQSVKFTCRVIAIATP----TLTWFHNNQELKQSVK 2056
T + P V++ S + + G V C +TW + KQ+V
Sbjct: 5 TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64
Query: 2057 FMKRYAGDDYTFYSSLR-----------KLQIDRFSIQD--------TSFDRRQ------ 2091
G R +++ R ++D +F
Sbjct: 65 IYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLN 124
Query: 2092 ----AAPRFVIKPQSAF-----CYEGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFM 2141
A P I+ A + + + TC ++W + + +
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR 184
Query: 2142 KRYAGDDY--TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR- 2198
+ + ++ + H +E + LNVQ + ++ + + +
Sbjct: 185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY 244
Query: 2199 ------------RAN--KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVY 2244
AN + W N + + I +G Y
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTY 299
Query: 2245 TCEAFNDEGESFSSCTLLVQV 2265
CEA N G + +
Sbjct: 300 ICEATNPIGTRSGQVEVNITE 320
Score = 44.0 bits (103), Expect = 4e-04
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 27/162 (16%)
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAG 288
++ + D EG Y P ++ +T P +++A
Sbjct: 96 LSRLELED--EGV-YICEF----ATFPTGNRESQLNLT---VMAKPTNWIEGTQAVLRAK 145
Query: 289 KILNVEIQFI------GEPPPEVTWTIDGKELKTDSV----RTTVTSIGYHTIVNTVNTK 338
K + ++ G+PP V+W K TVT I + + V ++
Sbjct: 146 KGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL---VPSR 202
Query: 339 RSDSGTYHLELRNTSGRDEGSFTVTVLE----TISKTNTTTI 376
+ + + R + S T+ V TI +
Sbjct: 203 EAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY 244
Score = 42.4 bits (99), Expect = 0.001
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 8/97 (8%)
Query: 272 VAPKIK-TPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYH 329
P++ + + + PP E WT L
Sbjct: 230 YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE------AQNR 283
Query: 330 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
T+ S +GTY E N G G V + E
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320
Score = 39.0 bits (90), Expect = 0.016
Identities = 37/313 (11%), Positives = 72/313 (23%), Gaps = 37/313 (11%)
Query: 1233 EVTGYSPSS--VSLAWNPPANHGGRPITGYYVEKRERGGEWLR----ANNYPTTNLNFTV 1286
PS + W N + + Y R T+ +
Sbjct: 37 SFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRL 96
Query: 1287 HDLREG--GKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTL 1344
L G Y G ++ + + +A + +D L
Sbjct: 97 SRLELEDEGVYICEF---ATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153
Query: 1345 SWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNL--------SEGEEYT 1396
+G V + + + PN TV + + +
Sbjct: 154 VATCTSANGKPPSV---VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLA 210
Query: 1397 FRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQP 1456
I + + V+ +P + + G D + A P
Sbjct: 211 --CIVNYHMDRFKESLT---LNVQY---EPEVTIEGFDGNWYLQRMDVKLTCKADANPPA 262
Query: 1457 AAF-WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHV 1515
+ W + + N S G Y + NP G + + V
Sbjct: 263 TEYHWTTLNGSLPKGVE------AQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Query: 1516 RVLDRPHPPENLH 1528
+ + + H
Sbjct: 317 NITEAAALEHHHH 329
Score = 36.7 bits (84), Expect = 0.076
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 8/92 (8%)
Query: 688 APKIK-TPLKDIIIKAGKILNVEIQFIGEPPP-EVTWTIDGKELKTDSVRTTVTSIGYHT 745
P++ + + + PP E WT L T
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE------AQNRT 284
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ S +GTY E N G G +
Sbjct: 285 LFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Score = 34.3 bits (78), Expect = 0.41
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 714 GEPPPEVTWTIDGKELKTDSV----RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSG 769
G+PP V+W K TVT I + + V ++ + + +
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL---VPSREAHQQSLACIVNYHMD 218
Query: 770 RDEGSFTI 777
R + S T+
Sbjct: 219 RFKESLTL 226
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding, phosphorylation,
receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A*
2p0c_A*
Length = 313
Score = 78.5 bits (194), Expect = 2e-15
Identities = 40/207 (19%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIF---AAKFIPVSHNLEKELIR--KEIDIMNQLHHPK 1746
+ + +G G FG V ++ A K + + ++ ++E+ E M HP
Sbjct: 38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97
Query: 1747 LINL-----HDAFEDDDEMVLIFEFLSGGELFE-----RITAPDYKMSEAEVINYMRQVC 1796
+I L + + + ++I F+ G+L R+ + ++ +M +
Sbjct: 98 VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA 157
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTA---EF 1853
++++ +N +H D+ N M + + V + DFGL+ K+ + + ++
Sbjct: 158 LGMEYLSNRNFLHRDLAARNCMLRDDMT--VCVADFGLSKKIYSGDYYRQGRIAKMPVKW 215
Query: 1854 AAPE-IVEREPVGFYT---DMWAVGVL 1876
A E + + YT D+WA GV
Sbjct: 216 IAIESLAD----RVYTSKSDVWAFGVT 238
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 72.8 bits (179), Expect = 2e-15
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ ++ EG+S F C + A+ W + + S +F G Y
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 2151 FVINRTKMEDRGEYIIRAEN 2170
V+ D GE +
Sbjct: 67 LVVREAAPSDAGEVVFSVRG 86
Score = 66.3 bits (162), Expect = 4e-13
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+W K + S+ F + + L + E P D+G S +L+V
Sbjct: 40 PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIV 95
Query: 2264 QV 2265
+
Sbjct: 96 RE 97
Score = 51.6 bits (124), Expect = 6e-08
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 2252 EGESFS-SCTL-----LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY 2305
EGES S C L W G V +Q T+ G+ Y + + D G+
Sbjct: 22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQGRKYILVVREAAPSDAGEV 80
Query: 2306 SAQMGGIIAAFSLNV 2320
+ G+ + SL V
Sbjct: 81 VFSVRGLTSKASLIV 95
Score = 51.6 bits (124), Expect = 6e-08
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ ++ EG+S F C + A+ W + + S +F G Y
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L + + D
Sbjct: 67 -------LVVREAAPSDA 77
Score = 49.7 bits (119), Expect = 3e-07
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKT 316
S +S I LK + + G+ + WT+ GK + +
Sbjct: 3 SGSSGH---------VGITKRLKTMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGS 52
Query: 317 DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
S R T G I+ SD+G + ++ V E
Sbjct: 53 SS-RFQATRQGRKYILVVREAAPSDAGEVVF----SVRGLTSKASLIVRE 97
Score = 48.5 bits (116), Expect = 7e-07
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 689 PKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
I LK + + G+ + WT+ GK + + S R T G I
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSS-RFQATRQGRKYI 66
Query: 747 VNTVNTKRSDSGTYHLELRNTSGR 770
+ SD+G +R + +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSK 90
Score = 47.4 bits (113), Expect = 2e-06
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 1426 PVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSA 1483
V ++ + V GE F + A W + S R
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSS-RFQATRQGRKY 65
Query: 1484 SLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
LVV+ + SD G+ ++ A+L VR +R P
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTS--KASLIVR--ERSGPS 102
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 78.5 bits (194), Expect = 2e-15
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 29/208 (13%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIF---AAKFIPVSHNLEKELIR--KEIDIMNQLHHPK 1746
+ +G G FG V + ++ F A K + ++ +E M + HP
Sbjct: 27 LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPH 86
Query: 1747 LINL------HDAFEDDDEMVLIFEFLSGGELFE-----RITAPDYKMSEAEVINYMRQV 1795
+ L A ++I F+ G+L RI + + ++ +M +
Sbjct: 87 VAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDI 146
Query: 1796 CEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTA---E 1852
++++ +N IH D+ N M + V + DFGL+ K+ + + + +
Sbjct: 147 ACGMEYLSSRNFIHRDLAARNCMLAEDMT--VCVADFGLSRKIYSGDYYRQGCASKLPVK 204
Query: 1853 FAAPE-IVEREPVGFYT---DMWAVGVL 1876
+ A E + + YT D+WA GV
Sbjct: 205 WLALESLAD----NLYTVHSDVWAFGVT 228
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 79.0 bits (195), Expect = 3e-15
Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 29/194 (14%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNI-----FAAKFIPVSH-----------NLEKELI 1732
+ + IG G FG ++ + ++ K P + K
Sbjct: 36 AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ 95
Query: 1733 RKEIDIMNQLHHPKLINLH----DAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEV 1788
++ +L + + +I + G +L + A + S V
Sbjct: 96 IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTV 154
Query: 1789 INYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK-LDPNEVVKIS 1847
+ ++ + ++++HE +H D+K N++ +N V ++D+GLA + +
Sbjct: 155 LQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYA 214
Query: 1848 -------TGTAEFA 1854
GT EF
Sbjct: 215 ADPKRCHDGTIEFT 228
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle,
hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 72.4 bits (178), Expect = 3e-15
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 2089 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2148
++ F KP+S G F A + W ++ S K+ G
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 2149 YTFVINRTKMEDRGEYIIRAEN 2170
+T + D+G Y + A +
Sbjct: 63 HTLTVREVGPADQGSYAVIAGS 84
Score = 64.7 bits (158), Expect = 1e-12
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V W +I SN + ++ HTL + E+ P D G Y A G S L V
Sbjct: 39 VRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 53.5 bits (129), Expect = 1e-08
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
G V+V W + G+ +S Y G + + + D G Y+
Sbjct: 22 AGSPAVFEAETERAGVKVRWQRGGSDISASN-KYGLATEGTRHTLTVREVGPADQGSYAV 80
Query: 2308 QMGGIIAAFSLNVV 2321
G F L V+
Sbjct: 81 IAGSSKVKFDLKVI 94
Score = 53.1 bits (128), Expect = 2e-08
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
++ F KP+S G F A + W ++ S K+ G
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 2066 YT 2067
+T
Sbjct: 63 HT 64
Score = 48.9 bits (117), Expect = 5e-07
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 274 PKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ + + AG + E + +V W G ++ + S + + + G
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETE---RAGVKVRWQRGGSDI-SASNKYGLATEGTRHT 64
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ +D G+Y + +G + F + V+E
Sbjct: 65 LTVREVGPADQGSYAVI----AGSSKVKFDLKVIE 95
Score = 42.7 bits (101), Expect = 8e-05
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 689 PKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ + + AG + E + +V W G ++ + S + + + G
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETE---RAGVKVRWQRGGSDI-SASNKYGLATEGTRHT 64
Query: 747 VNTVNTKRSDSGTY 760
+ +D G+Y
Sbjct: 65 LTVREVGPADQGSY 78
Score = 41.2 bits (97), Expect = 3e-04
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 23/111 (20%)
Query: 1409 EPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSI 1466
EPGK+ ++ R + V AG F W S
Sbjct: 2 EPGKKPVSAFSKKP-----------RSVEVAAGSPAVFEAET---ERAGVKVRWQRGGSD 47
Query: 1467 IDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHV 1515
I S+ + +L V+ +D G Y + AG L V
Sbjct: 48 ISASN-KYGLATEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKV 93
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 75.9 bits (186), Expect = 3e-15
Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 17/193 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN- 1283
PP P + + + + W P GG P RE +Y T N
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPG-TDGGLPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 1284 --FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV----DRI 1337
F Y V A N+ G + V +PDPP V
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIV---QPDPPLELAVEVKQPED 118
Query: 1338 TKDSVTLSWRPPKH---DGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHTVGNLSEGE 1393
K + + W PP G Y ++ K +K +W + +L G+
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW--EIHFAGQQTEFKILSLHPGQ 176
Query: 1394 EYTFRVIAVNEAG 1406
+Y +V + G
Sbjct: 177 KYLVQVRCKPDHG 189
Score = 70.5 bits (172), Expect = 2e-13
Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 22/203 (10%)
Query: 490 PPEGPLEVSNVTKESCKL--SWRVPVDDGGAPILHYIIEKMDISRGTWSD-----AGMTV 542
PP P + WR DGG P +Y + + G
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPG-TDGGLPT-NYSLTYHREGETLMHECPDYITGGPN 60
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK----D 598
S + + Y+ V A N +G S + + V +PD P + V+ +
Sbjct: 61 SCHFGKQYTSMWRTYIMMVNATNQMGSS---FSDELYVDVTYIVQPDPPLELAVEVKQPE 117
Query: 599 WGEDFVDLAWKPPLN---DGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKG 655
+ ++ + W PP G Y I+ K + W + +T+ KI L G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE--IHFAGQQTEFKILSLHPG 175
Query: 656 QEYEFRVIAVNEAGP-SEPSDAS 677
Q+Y +V + G S S A+
Sbjct: 176 QKYLVQVRCKPDHGYWSAWSPAT 198
Score = 62.0 bits (150), Expect = 2e-10
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP--- 1577
P PE ++ T +W P D G TNY + T+ + Y+T
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 1578 -FVRVRNLAIGSTYEFRVMAENQYGLSKPA-LTIDPIKAKHPFDVPGAPGAPKGVDSTED 1635
+ ++ TY V A NQ G S L +D P K + +
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 1636 SISLVWSKPRH---DGGSPIQRYIVEKRLISDDKW 1667
+ + WS P G Y + + +W
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW 156
Score = 52.8 bits (126), Expect = 3e-07
Identities = 32/188 (17%), Positives = 49/188 (26%), Gaps = 27/188 (14%)
Query: 1145 PPGQPQIVDWDTNNATLM---WDRPRTDGGSKIQGYKVEFRSTRTATDC----GLGYQQC 1197
PPG+P+I + N W G +C G C
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 1198 HADVGQTPHG----WWLQDSRIQGRIQSP---FDP-----PDAPSQPEVT----GYSPSS 1241
H T + + G S D PD P + V
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPY 122
Query: 1242 VSLAWNPPAN---HGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFR 1298
+ + W+PP G Y + + ++ F + L G KY +
Sbjct: 123 LWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE-WEIHFAGQQTEFKILSLHPGQKYLVQ 181
Query: 1299 VIAINEAG 1306
V + G
Sbjct: 182 VRCKPDHG 189
Score = 52.0 bits (124), Expect = 4e-07
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 11/138 (7%)
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAG---FDTATLHVRVLDRPHPPENLHA-- 1529
+ NS + + + N G D + V + +P PP L
Sbjct: 54 YITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEV 113
Query: 1530 --DEFAGDSLTLYWTPPR---DNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNL 1584
E L + W+PP G Y + K + W + T F + +L
Sbjct: 114 KQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFK-ILSL 172
Query: 1585 AIGSTYEFRVMAENQYGL 1602
G Y +V + +G
Sbjct: 173 HPGQKYLVQVRCKPDHGY 190
Score = 51.6 bits (123), Expect = 5e-07
Identities = 39/206 (18%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 76 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT- 132
PP P + + WR D G + P G +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 133 --RAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPTVT----D 184
+ Y V A N++G S L + PD P + V +
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQ-----PDPPLELAVEVKQPE 117
Query: 185 WGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEG 240
K ++ ++W+PP G Y I KP+ WE T + L G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--HFAGQQTEFKILSLHPG 175
Query: 241 EEYEFRVIAVNKGGPGEPSKASAPVT 266
++Y +V G S S
Sbjct: 176 QKYLVQVRCKPDHGYW--SAWSPATF 199
Score = 51.6 bits (123), Expect = 6e-07
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 1044 PPQGPLDVSDITPESCSL--SWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
PP P +P + W+P DGG P TNY + + + ++
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPG-TDGGLP-TNYSLTYHREGETLMHECPDYITGGPN 60
Query: 1101 ---YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQI----VD 1153
+ R Y V A NQ G S EL +T PDPP + + +
Sbjct: 61 SCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVT---YIVQPDPPLELAVEVKQPE 117
Query: 1154 WDTNNATLMWDRPRT---DGGSKIQGYKVEFRSTRTAT 1188
+ W P G Y++ + + A
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE 155
Score = 46.2 bits (109), Expect = 4e-05
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 1041 KPSPPQGP---LDVSDITPESCSLSWKPP----LDDGGSPITNYVVEKYESATGFWSKLS 1093
+P PP + + + W PP L G + Y + W ++
Sbjct: 102 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLL-YEIRLKPEKAAEW-EIH 159
Query: 1094 SFVRSPAYDVFGLETNRQYRFRVRAENQYGV----SEPLELDNSITAKFPFTVPD 1144
+ + + L ++Y +VR + +G S I FT+ D
Sbjct: 160 FAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT----FIQIPSDFTMND 210
Score = 36.6 bits (84), Expect = 0.051
Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 9/105 (8%)
Query: 177 PGQPTVTDW---GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
PG+P + K+ W P DGG P + Y + + C S
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGT-DGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 234 ----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 274
Y V A N+ G + VT + P
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPP 106
Score = 36.6 bits (84), Expect = 0.061
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 921 HVSPYDHHATVPRLLEGTTYEFRVRAENLQGL----SEP--ITTKEPVVAKN 966
H + + L G Y +VR + G S I +
Sbjct: 159 HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFTMND 210
Score = 36.2 bits (83), Expect = 0.066
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWM---NALEVPANK 644
P PE + ++ W+P DGG P T+Y + +G + + N
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPG-TDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 645 TDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAP 689
+ + Y V A N+ G S + + + P
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPP 106
Score = 34.7 bits (79), Expect = 0.22
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGF-SKPSSTS 1931
+ W + + + + + SL G Y +V+ K G+ S S +
Sbjct: 152 KAAEWEI--HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
Score = 30.8 bits (69), Expect = 4.1
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGA-SEPLDPLFPD 486
Y I + W+ + F + L G+KY+ ++R + +G S F
Sbjct: 143 LYEIRLKPEKAAEWEIHF-AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ 201
Query: 487 KPS 489
PS
Sbjct: 202 IPS 204
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 72.5 bits (178), Expect = 3e-15
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 589 DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVK 648
AP+ V + ED + L+W P + ++IQ +E L VP ++
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 649 IPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ L G EY + V S P A
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
Score = 72.1 bits (177), Expect = 4e-15
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 1327 DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHT 1385
P+ V +T+DS+ LSW P A +++Q + + +VP +
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEP 1410
+ L G EYT + V S P
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNP 83
Score = 68.6 bits (168), Expect = 7e-14
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 175 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 233
P V++ +D + L WT P + ++I+ + VP + +
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
+ LK G EY + V G P A
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 64.0 bits (156), Expect = 2e-12
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 1227 DAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-EWLRANNYPTTNLNFT 1285
AP V+ + S+ L+W P + ++ +E P + ++
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPS 1311
+ L+ G +Y + + P
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 62.5 bits (152), Expect = 8e-12
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 1044 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA--Y 1101
P+ L VS++T +S LSW P + +++++ Y+ + ++ V Y
Sbjct: 4 APKN-LVVSEVTEDSLRLSWTAPD----AAFDSFMIQ-YQESEKVGEAINLTVPGSERSY 57
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPP 1146
D+ GL+ +Y + S PL S T
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPL----SAEFT---TGGHHH 95
Score = 60.2 bits (146), Expect = 7e-11
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNS---TVWTKVSSY 1573
+L P+NL E DSL L WT P + +++++ ++ + V
Sbjct: 1 MLP---APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGS 53
Query: 1574 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ + L G+ Y + S P
Sbjct: 54 ERS--YDLTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 57.8 bits (140), Expect = 4e-10
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+P+P L S +T+ S L W AP ++++ + E V G+
Sbjct: 2 LPAPKN--LVVSEVTEDSLRLSWTAPDAA----FDSFMIQYQESEKVGEAINLTVPGSER 55
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 171
L G +Y + V S PL + T
Sbjct: 56 SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEF-TTGGHHH 95
Score = 52.1 bits (125), Expect = 4e-08
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 490 PPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS---LFY 546
P L VS VT++S +LSW P A ++I+ + + + +TV Y
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAIN-LTVPGSERSY 57
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
D+ L EY + V S+ L TT
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGG 92
Score = 45.5 bits (108), Expect = 8e-06
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKE 960
++I+ ++ G + V + + L GT Y + S P++ +
Sbjct: 31 SFMIQYQESEKVGEAINLT--VPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 35.9 bits (83), Expect = 0.023
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+Y + L G +Y + S P S
Sbjct: 56 SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
Score = 32.8 bits (75), Expect = 0.24
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 453 FTVKGLTEGKKYVFRIRTENMYGASEPL 480
+ + GL G +Y I S PL
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 30.5 bits (69), Expect = 1.5
Identities = 4/43 (9%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+ P + + ++ L W P + + ++++ +
Sbjct: 1 MLPAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQES 39
Score = 28.6 bits (64), Expect = 6.3
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 1623 APGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKY 1682
AP + TEDS+ L W+ P + ++++ + +P + Y
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLT--VPGSERSY 57
Query: 1683 T 1683
Sbjct: 58 D 58
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 72.4 bits (178), Expect = 3e-15
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2149
RF + EG + C + ++A P + W + N L+ K+ R G
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML 63
Query: 2150 TFVINRTKMEDRGEYIIRAEN 2170
V+ + +D G Y +
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGD 84
Score = 70.8 bits (174), Expect = 1e-14
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V W + N ++P + ++ + L + + P+DSG Y+C G+ +S TL V
Sbjct: 39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
Score = 56.2 bits (136), Expect = 2e-09
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
RF + EG + C + ++A P + W + N L+ K+ R G
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA-- 61
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
+ +L + QD+
Sbjct: 62 -----MLELVVRNLRPQDS 75
Score = 50.8 bits (122), Expect = 1e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 2263 VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQMGGIIAAFSLNV 2320
V W N + Y Q G ++ + + D G+YS G + +L V
Sbjct: 37 APVKWCYGNNVLRPGDK-YSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSATLTV 93
Score = 45.0 bits (107), Expect = 1e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 17/92 (18%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
+ + LKD+ + G + P V W L+ +++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG---------DKYSL- 56
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
R + L +RN +D G ++ +
Sbjct: 57 ------RQEGAMLELVVRNLRPQDSGRYSCSF 82
Score = 43.9 bits (104), Expect = 3e-05
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+ + LKD+ + G + P V W L+ +++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG---------DKYSL- 56
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
R + L +RN +D G ++
Sbjct: 57 ------RQEGAMLELVVRNLRPQDSGRYSCS 81
Score = 40.0 bits (94), Expect = 9e-04
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 1425 KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSAS 1484
PV ++D+ V G ++ + P W ++++ D + +
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNNVLRPGD-KYSLRQEGAMLE 64
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
LVV+N + D G+Y G T + + V P P
Sbjct: 65 LVVRNLRPQDSGRYSCS----FGDQTTSATLTVTALPSGP 100
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 78.6 bits (194), Expect = 4e-15
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 30/204 (14%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
E IG G FG V+ K I + + E IM
Sbjct: 93 FNEVIGRGHFGCVYHGTLLDNDG----KKIHCAVKSLNRITDIGEVSQFLT-EGIIMKDF 147
Query: 1743 HHPKLINLHDA-FEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKH 1801
HP +++L + +++ ++ G+L I + + ++I + QV + +K
Sbjct: 148 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKF 207
Query: 1802 MHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFA-----AP 1856
+ K +H D+ N M + + VK+ DFGLA + E + T A
Sbjct: 208 LASKKFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMAL 265
Query: 1857 E-IVEREPVGFYT---DMWAVGVL 1876
E + + +T D+W+ GVL
Sbjct: 266 ESLQTQ----KFTTKSDVWSFGVL 285
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU
genomics, berkeley structural genomics center, BSGC, cell
A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 73.5 bits (180), Expect = 4e-15
Identities = 22/110 (20%), Positives = 31/110 (28%), Gaps = 13/110 (11%)
Query: 2088 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMK----- 2142
R FV P S + G SV+ C + P + W+ Q +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 2143 --------RYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ T I+ ED G Y RA N V+
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 57.7 bits (139), Expect = 1e-09
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 2005 DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGD 2064
R FV P S + G SV+ C + P + W+ Q + A
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 2065 DYTFYSSLRK------LQIDRFSIQDT 2085
D + + ID +DT
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDT 102
Score = 55.4 bits (133), Expect = 8e-09
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 2204 DVIWLHNNKEIKPSNDFAYS-------------SVAHVHTLKIAEIFPEDSGVYTCEAFN 2250
++ W + + T+ I + ED+G Y C A N
Sbjct: 52 EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
Query: 2251 DEGESFSSCTLLVQ 2264
D + + V+
Sbjct: 112 DPDRNHLTRAPRVK 125
Score = 48.9 bits (116), Expect = 1e-06
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 12/118 (10%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKT------DSVRTTVT 324
G + + + +G P PE+ W +G+ D R
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 325 SIGYHTIVNTVNT------KRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTI 376
I + +T D+GTY N R+ + V ++ +
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136
Score = 45.8 bits (108), Expect = 2e-05
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
G + + + +G P PE+ W +G+ + G
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ---LWDGARLDR 77
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFT 776
++ + + D G++
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYE 106
Score = 43.5 bits (102), Expect = 9e-05
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 13/124 (10%)
Query: 1406 GNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDS 1465
G+S +V + + G +H + P P W+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAGF-VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
Query: 1466 IIDDSDTRVHKQLTM------------NSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
+D +++ + ++++ + D G Y + N + T
Sbjct: 61 GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTR 120
Query: 1514 HVRV 1517
RV
Sbjct: 121 APRV 124
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 74.9 bits (183), Expect = 6e-15
Identities = 27/190 (14%), Positives = 47/190 (24%), Gaps = 48/190 (25%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
E SV TC +TWF + + + D + + + RG Y
Sbjct: 17 EDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQC 66
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN------------------------- 2201
+ + +V + K+ + +
Sbjct: 67 KGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSI 126
Query: 2202 -------------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
+++W HN+K I D H E SG Y C
Sbjct: 127 SGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 186
Query: 2249 FNDEGESFSS 2258
+ E +
Sbjct: 187 RGSKPEDANF 196
Score = 63.0 bits (152), Expect = 7e-11
Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 35/183 (19%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELKQS----------------------------V 2055
E SV TC +TWF + + +
Sbjct: 17 EDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73
Query: 2056 KFMKRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAF--CYEGQSVKF 2113
K ++ Y + + D D D Q+ + G +V
Sbjct: 74 KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVIL 133
Query: 2114 TCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG 2173
TC + W HN++ + + +D+ + +++E G Y+
Sbjct: 134 TCPQYP--GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKP 191
Query: 2174 YRE 2176
Sbjct: 192 EDA 194
Score = 43.0 bits (100), Expect = 5e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 715 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 774
P E+ W + K + D + S H + ++ SG Y R + D
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF-SELEQSGYYVCYPRGSKPEDANF 196
Query: 775 FTIV 778
+ +
Sbjct: 197 YLYL 200
Score = 42.6 bits (99), Expect = 6e-04
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGS 359
P E+ W + K + D + S H + ++ SG Y R + D
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF-SELEQSGYYVCYPRGSKPEDANF 196
Query: 360 FT 361
+
Sbjct: 197 YL 198
Score = 42.2 bits (98), Expect = 8e-04
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 7/94 (7%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ W + K I + + G+Y C+ ++ + +
Sbjct: 32 ITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84
Query: 2265 VSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTT 2298
K DD + G ++ T
Sbjct: 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT 118
Score = 38.3 bits (88), Expect = 0.016
Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 11/120 (9%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
+TW DGK + + ++G + + G Y + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLG--------SNAKDPRGMYQCKGSQNKSKPLQ 77
Query: 774 SFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRITKDSVTLS 833
+ + K + + + + P I+ +V L+
Sbjct: 78 VYYRMGSADD---AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Score = 38.0 bits (87), Expect = 0.018
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 8/80 (10%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+TW DGK + + ++G + + G Y + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLG--------SNAKDPRGMYQCKGSQNKSKPLQ 77
Query: 359 SFTVTVLETISKTNTTTISS 378
+ +K +
Sbjct: 78 VYYRMGSADDAKKDAAKKDD 97
Score = 33.7 bits (76), Expect = 0.40
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 8/121 (6%)
Query: 1401 AVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFW 1460
A +A + K+ N+ + ++ +G + P +P W
Sbjct: 88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILW 145
Query: 1461 FANDSIIDDSDTRVHKQLTMNSASLVVKN-SQRSDGGQYRLQLKNPAGFD---TATLHVR 1516
ND I + K + + L +K S+ G Y + D L R
Sbjct: 146 QHNDKNIGGDED--DKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
Query: 1517 V 1517
V
Sbjct: 204 V 204
Score = 31.8 bits (71), Expect = 2.1
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 2229 HTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQ 2288
H +K+ + + S + TC+A ++W+KDG + + +G
Sbjct: 8 HLVKVYDYQEDGSVLLTCDAEAKN------------ITWFKDGKMIGFLTEDKKKWNLG- 54
Query: 2289 TYKMKILSTTLDDVGQYS 2306
S D G Y
Sbjct: 55 -------SNAKDPRGMYQ 65
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold,
fibronectin type III modules, helical bundle, cytokine,
ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens}
Length = 317
Score = 77.2 bits (189), Expect = 7e-15
Identities = 37/293 (12%), Positives = 76/293 (25%), Gaps = 28/293 (9%)
Query: 1321 EQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIK-GYIVQKRKKGGDWVDANSVPV 1379
++K PP + V L W+P + Y V+ D +
Sbjct: 7 DEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE----TR 62
Query: 1380 PNPVHTVGNLSEGEEYTFRVIAVNEAGN--SEPGKQSGPVIVEEQPNKPVMDLSGVRDIT 1437
V L G + R I N+ S P +++L+ + T
Sbjct: 63 ITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHA-PPGSPGTSIVNLTCTTNTT 121
Query: 1438 VKAGEDFSIHVPFMA---FPQPAA----------FWFANDSIIDDSDTRVHKQLTMNSAS 1484
+ + A + + + +
Sbjct: 122 EDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFP 181
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYW 1541
S+ D + + + +D+ +PP N+ A E G +++ W
Sbjct: 182 RTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTA-EIEGTRMSIQW 240
Query: 1542 TPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
P +Y V+ + + + + S Y+ +V
Sbjct: 241 EKPVSAFPIHCFDYEVKIHNTRNGYLQIEKLMTNA---FISIIDDLSKYDVQV 290
Score = 72.6 bits (177), Expect = 2e-13
Identities = 44/372 (11%), Positives = 81/372 (21%), Gaps = 81/372 (21%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPIT-NYVVEKYESATGFWSKLSSFVRSP 1099
PP + L WKP D + Y V+ + +
Sbjct: 11 SLLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET----RITE 65
Query: 1100 AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNA 1159
+ V L R +N + ++ + PPG P
Sbjct: 66 SKAVTILHMGFSASVRTILQNDHS--------LLASSWASAELHAPPGSP---------- 107
Query: 1160 TLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQDSRIQGRI 1219
G+ I +T YQ + H W+ +
Sbjct: 108 -----------GTSIVNLTCTTNTTEDNYSRLRSYQ-------VSLHCTWMVGTDAPEDT 149
Query: 1220 QSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPT 1279
Q E YS +
Sbjct: 150 QYFLYYRYGSWTEECQEYSMDT--------------------------------LGRNIA 177
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITK 1339
T + V ++ +P D + + +PP I
Sbjct: 178 CWFPRTFILSKGRDWLAVLVNGSSKHS---AIRPFDQLFALHAIDQINPPLNVTA-EIEG 233
Query: 1340 DSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRV 1399
+++ W P Y V+ ++ + + + + +Y +V
Sbjct: 234 TRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYL---QIEKLMTNAFISIIDDLSKYDVQV 290
Query: 1400 IAVNEAGNSEPG 1411
A + E G
Sbjct: 291 RAAVSSMCREAG 302
Score = 67.6 bits (164), Expect = 1e-11
Identities = 35/257 (13%), Positives = 73/257 (28%), Gaps = 34/257 (13%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
Y +++ D+++T E V L G R +N S +
Sbjct: 46 EYQVKINAPKEDDYETRI----TESKAVTILHMGFSASVRTILQN--DHSLLASSWASAE 99
Query: 488 PSPPEGPLE----------------VSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDIS 531
P G S + L V Y + S
Sbjct: 100 LHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGS 159
Query: 532 RG------TWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEF 585
+ G ++ ++ ++ + V VN + + A +
Sbjct: 160 WTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVL-VNGSSKHSAIRPFDQLFALHAI 218
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
D+ + P T + + + W+ P++ DY ++ N Y ++ T
Sbjct: 219 DQINPPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYL----QIEKLMT 273
Query: 646 DVKIPDLTKGQEYEFRV 662
+ I + +Y+ +V
Sbjct: 274 NAFISIIDDLSKYDVQV 290
Score = 54.1 bits (129), Expect = 2e-07
Identities = 28/275 (10%), Positives = 57/275 (20%), Gaps = 20/275 (7%)
Query: 587 EPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPIT-DYIIQKKEKGNPYWMNALEVPANKT 645
P T+K G V L WKP + + +Y ++ +
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDY-----ETRITE 65
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKI 705
+ L G R I N+ S + + L
Sbjct: 66 SKAVTILHMGFSASVRTILQND-HSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDN 124
Query: 706 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELR 765
+ + T + + + G
Sbjct: 125 YSRLR----SYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWF 180
Query: 766 NTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPKVDRI 825
+ + + S H + + + +PP I
Sbjct: 181 PRTFILSKGRDWL-----AVLVNGSSKHSAIRPFDQLFALHAID---QINPPLNVTA-EI 231
Query: 826 TKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWV 860
+++ W P Y V+ ++
Sbjct: 232 EGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYL 266
Score = 47.2 bits (111), Expect = 4e-05
Identities = 48/311 (15%), Positives = 86/311 (27%), Gaps = 34/311 (10%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIK-GYIVQKRKKGGDWVDANSVPVPNPV 871
PP + V L W+P + Y V+ D + + +
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE--TRITESKA 68
Query: 872 HTLLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATV 931
T+L +G+ + + LL W A H P T
Sbjct: 69 VTILHMGFSASVRTILQNDHSLL-----------------ASSWASAELHAPP-GSPGTS 110
Query: 932 PRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQ 991
L TT L+ + V + + Y E CQ
Sbjct: 111 IVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQ-EYSM 169
Query: 992 IVDGKPVIAKSPFDPPDAPSQPE----VTGYSPSSVSLAWNPPANHGGRPITDKPSPPQG 1047
G+ + P + + V G S S ++ D+ +PP
Sbjct: 170 DTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFAL---HAIDQINPPLN 226
Query: 1048 PLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLE 1107
+ I S+ W+ P+ +Y V+ + + G+ + ++
Sbjct: 227 -VTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQIEKLMTN---AFISIID 281
Query: 1108 TNRQYRFRVRA 1118
+Y +VRA
Sbjct: 282 DLSKYDVQVRA 292
Score = 46.0 bits (108), Expect = 1e-04
Identities = 36/305 (11%), Positives = 77/305 (25%), Gaps = 48/305 (15%)
Query: 181 TVTDWGKDHVDLEWTPPKKDGGSPIS-QYIIEKKPKYGPWEKACIVPANITATSVPDLKE 239
T+ G V L+W P ++ +Y ++ + + +V L
Sbjct: 19 TIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE----TRITESKAVTILHM 74
Query: 240 GEEYEFRVIAVNKGG--PGEPSKASAPVTC-----KPRFVAPKIKTPLKDIIIKAGKILN 292
G R I N + A + T + ++
Sbjct: 75 GFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVS 134
Query: 293 VEIQF-IGEPPPEVT-------WTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGT 344
+ + +G PE T + +E + S+ T +I + +K D
Sbjct: 135 LHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLA 194
Query: 345 YHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNM 404
+ + + L I + N + I + W
Sbjct: 195 VLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAE------------IEGTRMSIQWE- 241
Query: 405 KKSLHPVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKY 464
PV + Y +++ + + + + KY
Sbjct: 242 ----KPVSAFPIHCF--------DYEVKIHNTRNGYLQIEK---LMTNAFISIIDDLSKY 286
Query: 465 VFRIR 469
++R
Sbjct: 287 DVQVR 291
Score = 45.3 bits (106), Expect = 2e-04
Identities = 29/230 (12%), Positives = 54/230 (23%), Gaps = 24/230 (10%)
Query: 483 LFPDK---PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI-LHYIIEKMDISRGTWSDA 538
L PD+ PP + L W+ D + L Y ++ +
Sbjct: 4 LLPDEKISLLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-- 60
Query: 539 GMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPE------ 592
++ V L R N + + +
Sbjct: 61 -TRITESKAVTILHMGFSASVRTILQNDHSLLAS-SWASAELHAPPGSPGTSIVNLTCTT 118
Query: 593 ---KPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGN-----PYWMNALEVPANK 644
+ V L + T Y + + Y M+ L
Sbjct: 119 NTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIAC 178
Query: 645 TDVKIPDLTKGQE-YEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKT 693
+ L+KG++ V ++ P D + + P T
Sbjct: 179 WFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVT 228
Score = 39.1 bits (90), Expect = 0.012
Identities = 31/227 (13%), Positives = 57/227 (25%), Gaps = 27/227 (11%)
Query: 72 HIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGT 130
I P + L+W+ D ++ L Y V+ + +
Sbjct: 9 KISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET---RITE 65
Query: 131 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD----------RPGQP 180
L G ++ V+ + + SL + P G P +
Sbjct: 66 SKAVTILHMG--FSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTED 123
Query: 181 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC---IVPANITATS---- 233
+ V L T +QY + +YG W + C + +
Sbjct: 124 NYSRLRSYQVSLHCTWMVGTDAPEDTQYFL--YYRYGSWTEECQEYSMDTLGRNIACWFP 181
Query: 234 --VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKT 278
K + V +K P + + P T
Sbjct: 182 RTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVT 228
Score = 37.2 bits (85), Expect = 0.051
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 13/154 (8%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST------VWTKVSSYV 1574
+N SL W D E T Y + + + T + +
Sbjct: 119 NTTEDNYSRLRSYQVSLHCTWMVGTD--APEDTQYFLYYRYGSWTEECQEYSMDTLGRNI 176
Query: 1575 TTPFVRVRNLAIGS-TYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDST 1633
F R L+ G V +++ +P D + A H D P +
Sbjct: 177 ACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPF---DQLFALHAIDQINPPLNVT-AEIE 232
Query: 1634 EDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKW 1667
+S+ W KP Y V+ +
Sbjct: 233 GTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYL 266
Score = 30.6 bits (68), Expect = 6.2
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 80 PLKPSNIT----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE 135
P N+T + +++W P Y V+ + G + T
Sbjct: 221 INPPLNVTAEIEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQIEKLM--TNAFIS 278
Query: 136 NLIEGHDYNFRVKA 149
+ + Y+ +V+A
Sbjct: 279 IIDDLSKYDVQVRA 292
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 132
Score = 72.4 bits (178), Expect = 8e-15
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 1219 IQSPFDPPD-APSQPEVTGYSPSSVSLAWNPPA--NHGGRPITGYYVEKRERGGEWLRAN 1275
+++ D P AP + + S+ + W PPA G+ ITGY + R+ +
Sbjct: 11 VRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKIRYRKASRKSDVTE 69
Query: 1276 -NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKV 1334
T L+ + L G +Y FRV A+ G G + + + + D P+V
Sbjct: 70 TLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW---LSAETFESDLDETRVPEV 126
Score = 58.5 bits (142), Expect = 4e-10
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPD-PPEAPKVDRITKDSVTLSWRPP---KHDGGARIKGYI 1361
G S V+ P P+ ++ S+ + W+PP +G +I GY
Sbjct: 1 GSSGSSGDV-AVRTLSDV--PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYK 55
Query: 1362 VQKRKKGGDWVDANS-VPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV- 1419
++ RK + V + L G EY FRV A+ G G + +
Sbjct: 56 IRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAE 112
Query: 1420 --EEQPNKP-VMDLSGV 1433
E ++ V ++SG
Sbjct: 113 TFESDLDETRVPEVSGP 129
Score = 55.8 bits (135), Expect = 5e-09
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 586 DEPD-APEKPTVKDWGEDFVDLAWKPPLND---GGSPITDYIIQKKEKGNPYWMNALEVP 641
D P AP+ +++ + + W+PP G IT Y I+ ++ + V
Sbjct: 16 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVS 73
Query: 642 ANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ I L +G EY FRV A+ G +D
Sbjct: 74 GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD 107
Score = 46.6 bits (111), Expect = 7e-06
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 1523 PPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTT 1576
P+NL + S+ ++W PP NG +IT Y + + + T VS T
Sbjct: 21 APQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSG--TQ 76
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPK 1628
+ L G+ Y FRV A G D + A+ P+
Sbjct: 77 LSQLIEGLDRGTEYNFRVAALTINGTGPAT---DWLSAETFESDLDETRVPE 125
Score = 46.2 bits (110), Expect = 1e-05
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDD---GGSPITNYVVEKYESATGFWSKLSSF 1095
D PS PQ L + +S + W+PP G IT Y + +Y A+ +
Sbjct: 16 DVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNG--QITGYKI-RYRKASRKSDVTETL 71
Query: 1096 VRSPA--YDVFGLETNRQYRFRVRAENQYGV---SEPLELDNSITAKFPFTVPDPPGQPQ 1150
V + GL+ +Y FRV A G ++ L T + +
Sbjct: 72 VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSA---------ETFESDLDETR 122
Query: 1151 IVD 1153
+ +
Sbjct: 123 VPE 125
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 190 VDLEWTPPKKD---GGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEF 245
+ + W PP G I+ Y I + + +V + + L G EY F
Sbjct: 35 IMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNF 92
Query: 246 RVIAVNKGGPGEPSKASAPVTCK 268
RV A+ G G + ++ +
Sbjct: 93 RVAALTINGTGPA---TDWLSAE 112
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 74 PS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
PS P+ L S + W+ P I Y + V VSGT
Sbjct: 18 PSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQ 76
Query: 132 TRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVT 183
E L G +YNFRV A+ G + L + T + P +
Sbjct: 77 LSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE---TFESDLDETRVPEVSGPS 130
Score = 36.6 bits (85), Expect = 0.021
Identities = 24/152 (15%), Positives = 39/152 (25%), Gaps = 60/152 (39%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLL 875
P+ ++ S+ + W+PP
Sbjct: 21 APQNLSLEVRNSKSIMIHWQPP-------------------------------------- 42
Query: 876 SIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLL 935
A ++G++ GY I R VS + L
Sbjct: 43 ---------APATQNGQIT------GYKIRYRK--ASRKSDVTETLVSGTQLSQLIEGLD 85
Query: 936 EGTTYEFRVRAENLQG---LSEPI--TTKEPV 962
GT Y FRV A + G ++ + T E
Sbjct: 86 RGTEYNFRVAALTINGTGPATDWLSAETFESD 117
Score = 34.6 bits (80), Expect = 0.10
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
D PS P+ L + +S + W+ I Y I SR + +
Sbjct: 16 DVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSG 74
Query: 544 --LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTV 596
L + L EY FRV A+ G T A + D P V
Sbjct: 75 TQLSQLIEGLDRGTEYNFRVAALTINGTG---PATDWLSAETFESDLDETRVPEV 126
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 74.8 bits (183), Expect = 9e-15
Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 24/211 (11%)
Query: 82 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 132
P ++ + L W + Y V + W + S T
Sbjct: 7 SPPSVWFEAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTA 64
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 192
+L + Y RV+AV+ S V + + + G +
Sbjct: 65 VTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV--GSVNLEIHNGFILGKI 122
Query: 193 EWTPPKKDGGSP--------ISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 244
+ PK +Y I + G + S+ E E+
Sbjct: 123 QLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFT-HKKVKHEQFSLLTSGEVGEFC 181
Query: 245 FRVIAV--NKGGPGEPSKASAPVTCKPRFVA 273
+V ++ G SK + F
Sbjct: 182 VQVKPSVASRSNKGMWSKEECISLTRQYFTV 212
Score = 59.0 bits (142), Expect = 2e-09
Identities = 29/218 (13%), Positives = 47/218 (21%), Gaps = 28/218 (12%)
Query: 488 PSPPEGPLEVSNVTKES----CKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
PSPP +V E+ L W Y + + +W+
Sbjct: 6 PSPP-------SVWFEAEFFHHILHWTPIPQQS--ESTCYEVALLRYGIESWNSISQCSQ 56
Query: 544 -----LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKD 598
L L H Y RV+AV+ S T
Sbjct: 57 TLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV--GSVNLEIH 114
Query: 599 WGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA------LEVPANKTDVKIPDL 652
G + P + I + +
Sbjct: 115 NGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTS 174
Query: 653 TKGQEYEFRVIAVNEAGP--SEPSDASDIIMCKQRFLA 688
+ E+ +V + S I + +Q F
Sbjct: 175 GEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQYFTV 212
Score = 57.8 bits (139), Expect = 6e-09
Identities = 27/171 (15%), Positives = 44/171 (25%), Gaps = 17/171 (9%)
Query: 1244 LAWNPPANHGGRPITGYYVEKRERG-GEWLRA-NNYPTTNLNFTVH--DLREGGKYEFRV 1299
L W P T Y V G W T + + T DL Y RV
Sbjct: 22 LHWTPIPQQS--ESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 1300 IAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLS-WRPPKHDGGA--- 1355
A++ + + + E + + RP
Sbjct: 80 RAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFI--LGKIQLPRPKMAPAQDTYE 137
Query: 1356 ----RIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAV 1402
+ Y + RK G + V + ++ E E+ +V
Sbjct: 138 SIFSHFREYEIAIRKVPGQFT-FTHKKVKHEQFSLLTSGEVGEFCVQVKPS 187
Score = 56.3 bits (135), Expect = 2e-08
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 17/159 (10%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRV- 1581
P ++ + L+WTP SE T Y V Y W +S T +
Sbjct: 7 SPPSVWFEAE-FFHHILHWTPIPQ--QSESTCYEVALLRYGIESWNSISQCSQTLSYDLT 63
Query: 1582 ---RNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSIS 1638
+L + Y RV A + S+ +T + +
Sbjct: 64 AVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEV--TLTVGSVNLEIHNGFILGK 121
Query: 1639 LVWSKPRHDGGSP--------IQRYIVEKRLISDDKWIK 1669
+ +P+ + Y + R +
Sbjct: 122 IQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFT 160
Score = 49.4 bits (117), Expect = 3e-06
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 16/137 (11%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFG----LETNRQYRFRV 1116
L W P S T Y V W+ +S ++ +YD+ L + YR RV
Sbjct: 22 LHWTPI--PQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 1117 RAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGG----- 1171
RA + S+ + + + + RP+
Sbjct: 80 RAVDGSRHSQWTVTNTRFS--VDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYE 137
Query: 1172 ---SKIQGYKVEFRSTR 1185
S + Y++ R
Sbjct: 138 SIFSHFREYEIAIRKVP 154
Score = 44.7 bits (105), Expect = 1e-04
Identities = 19/154 (12%), Positives = 39/154 (25%), Gaps = 18/154 (11%)
Query: 428 RYIIEMAEYGLDNWKTVPG-----FCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP--- 479
Y + + YG+++W ++ T+ L Y R+R + S+
Sbjct: 35 CYEVALLRYGIESWNSISQCSQTLSYDLTAVTLD-LYHSNGYRARVRAVDGSRHSQWTVT 93
Query: 480 --LDPLFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAP-------ILHYIIEKMDI 530
+ + LE+ N R + Y I +
Sbjct: 94 NTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKV 153
Query: 531 SRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAV 564
+ + E+ +VK
Sbjct: 154 PGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPS 187
Score = 33.6 bits (76), Expect = 0.58
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 1218 RIQSPFDPPDAPSQPEVTGYSPS-SVSLAWNPPANHGGRP--------ITGYYVEKRERG 1268
S + + ++ + P + Y + R+
Sbjct: 95 TRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVP 154
Query: 1269 GEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGP--GKPSKPTDIVQCKE 1321
G++ + + F++ E G++ +V + G SK I ++
Sbjct: 155 GQFTF-THKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQ 208
Score = 30.1 bits (67), Expect = 6.2
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 1340 DSVTLSWRPPKHDGGARIKGYIVQKRKKG-GDWVDANS---VPVPNPVHTVGNLSEGEEY 1395
L W P + Y V + G W + + +L Y
Sbjct: 18 FHHILHWTPIP--QQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGY 75
Query: 1396 TFRVIAVNEAGNSEP 1410
RV AV+ + +S+
Sbjct: 76 RARVRAVDGSRHSQW 90
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 71.3 bits (175), Expect = 9e-15
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2149
RF ++ EG + C + + W + L+ ++ + G
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSK--VAPVEWKKGPETLRDGGRYSLKQDGTRC 62
Query: 2150 TFVINRTKMEDRGEYIIRAEN 2170
I+ + D GEY
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQ 83
Score = 67.8 bits (166), Expect = 2e-13
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W + ++ ++ L+I ++ D+G Y+C G+ +S TL V
Sbjct: 37 PVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTV 92
Query: 2264 QV 2265
+
Sbjct: 93 RA 94
Score = 54.3 bits (131), Expect = 9e-09
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
RF ++ EG + C + + W + L+ ++ + G
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGT-- 60
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
+LQI S+ D
Sbjct: 61 -----RCELQIHDLSVADA 74
Score = 50.8 bits (122), Expect = 2e-07
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 2252 EGESFS-SCTL--LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ 2308
EG + + C L + V W K + D Y Q G +++I ++ D G+YS
Sbjct: 22 EGATATLQCELSKVAPVEWKKGPETLRDGG-RYSLKQDGTRCELQIHDLSVADAGEYSCM 80
Query: 2309 MGGIIAAFSLNV 2320
G + +L V
Sbjct: 81 CGQERTSATLTV 92
Score = 48.1 bits (115), Expect = 1e-06
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 273 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
+ LK G L E+ V W + L D R ++ G
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL----SKVAPVEWKKGPETL-RDGGRYSLKQDGTRC 62
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + +D+G Y G++ S T+TV
Sbjct: 63 ELQIHDLSVADAGEYSCM----CGQERTSATLTVRA 94
Score = 45.1 bits (107), Expect = 1e-05
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 22/93 (23%)
Query: 688 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
+ LK G L E+ V W + L+ G ++
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL----SKVAPVEWKKGPETLRDG---------GRYS 54
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + D L++ + S D G ++ +
Sbjct: 55 L-------KQDGTRCELQIHDLSVADAGEYSCM 80
Score = 35.8 bits (83), Expect = 0.030
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 1425 KPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSAS 1484
P ++ G ++ W + D R +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGG-RYSLKQDGTRCE 63
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL 1518
L + + +D G+Y +ATL VR L
Sbjct: 64 LQIHDLSVADAGEYSCMCGQERT--SATLTVRAL 95
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type
myosin-binding protein C, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 100
Score = 70.8 bits (174), Expect = 1e-14
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ + + G+ + C + W N +++S + G +
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRIHKL 63
Query: 2152 VINRTKMEDRGEYIIRAEN 2170
VI ED G+Y+ +
Sbjct: 64 VIANALTEDEGDYVFAPDA 82
Score = 64.7 bits (158), Expect = 1e-12
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
W N ++ S+ +H L IA ED G Y D + V
Sbjct: 37 GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFA--PDAYNVTLPAKVHVI 94
Query: 2265 V 2265
Sbjct: 95 S 95
Score = 53.1 bits (128), Expect = 2e-08
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ + + G+ + C + W N +++S + G
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGR---- 59
Query: 2069 YSSLRKLQIDRFSIQDT 2085
+ KL I +D
Sbjct: 60 ---IHKLVIANALTEDE 73
Score = 52.3 bits (126), Expect = 3e-08
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
KI TPL D + GK + ++ + P WT +G ++ R V G +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESD-RLKVVQKGRIHKL 63
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
N D G Y + V V+
Sbjct: 64 VIANALTEDEGDY--VFAPDAYNVTLPAKVHVIS 95
Score = 47.7 bits (114), Expect = 2e-06
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 2252 EGESFS-SCTL--LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS-- 2306
G+ C + + W K+G PV + + Q G+ +K+ I + +D G Y
Sbjct: 21 LGKEICLKCEISENIPGKWTKNGLPVQESD-RLKVVQKGRIHKLVIANALTEDEGDYVFA 79
Query: 2307 AQMGGIIAAFSLNVV 2321
+ ++V+
Sbjct: 80 PDAYNVTLPAKVHVI 94
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
KI TPL D + GK + ++ + P WT +G ++ R V G +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESD-RLKVVQKGRIHKL 63
Query: 748 NTVNTKRSDSGTY 760
N D G Y
Sbjct: 64 VIANALTEDEGDY 76
Score = 44.2 bits (105), Expect = 2e-05
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 1430 LSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKN 1489
L+ + D TV G++ + W N + +SD R+ LV+ N
Sbjct: 11 LTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD-RLKVVQKGRIHKLVIAN 67
Query: 1490 SQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ D G Y A T V V+ P
Sbjct: 68 ALTEDEGDY--VFAPDAYNVTLPAKVHVISGP 97
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 70.8 bits (174), Expect = 1e-14
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ + + G+ V+ C + TP + W + + +++S K+ G
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 2152 VINRTKMEDRGEYIIRAENHYG 2173
VI ++D GEY E
Sbjct: 66 VIRGASLKDAGEYTCEVEASKS 87
Score = 70.0 bits (172), Expect = 2e-14
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
V WL + K I+ S + + L I +D+G YTCE + + +L V+
Sbjct: 39 VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVE 94
Query: 2265 V 2265
Sbjct: 95 E 95
Score = 51.1 bits (123), Expect = 8e-08
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ + + G+ V+ C + TP + W + + +++S K+ G
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT---- 61
Query: 2069 YSSLRKLQIDRFSIQDT 2085
+ L I S++D
Sbjct: 62 ---MAMLVIRGASLKDA 75
Score = 50.4 bits (121), Expect = 2e-07
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
GE C L V W KD + Y G + I +L D G+Y+
Sbjct: 22 PGEDVELRCELSRAGTPVHWLKDRKAIRKSQK-YDVVCEGTMAMLVIRGASLKDAGEYTC 80
Query: 2308 QMGGIIAAFSLNV 2320
++ + SL+V
Sbjct: 81 EVEASKSTASLHV 93
Score = 48.1 bits (115), Expect = 1e-06
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 15/112 (13%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS 318
S +S P I PL+D + G+ + + + P V W D K ++
Sbjct: 3 SGSSGP---------AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ 52
Query: 319 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISK 370
+ V G ++ D+G Y E+ + + ++ V E S
Sbjct: 53 -KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVEEKASG 99
Score = 46.1 bits (110), Expect = 6e-06
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 1426 PVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASL 1485
P + + D V GED + P W + I S + A L
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTPVH-WLKDRKAIRKSQ-KYDVVCEGTMAML 65
Query: 1486 VVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
V++ + D G+Y +++ TA+LHV + P
Sbjct: 66 VIRGASLKDAGEYTCEVEASKS--TASLHVEE--KASGPS 101
Score = 44.2 bits (105), Expect = 3e-05
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
I PL+D + G+ + + + P V W D K ++ + V G ++
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ-KYDVVCEGTMAMLV 66
Query: 749 TVNTKRSDSGTYHLELRNTSG 769
D+G Y E+ +
Sbjct: 67 IRGASLKDAGEYTCEVEASKS 87
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 74.0 bits (181), Expect = 1e-14
Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 21/193 (10%)
Query: 1244 LAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAIN 1303
L W PA G+ + + + TT L + G + RV A
Sbjct: 19 LQWESPAFAKGQ--LTFTAQYLSYRIFQDKCMQ--TTLTECDFSSLSKYGDHTLRVRAEF 74
Query: 1304 EAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIK----- 1358
+ S I PP + D + + + PK +
Sbjct: 75 ---ADEHSDWVQITFSPVDDTIIGPPGM--QVEVLADCLHMRFLAPKIENEYETWTMKNV 129
Query: 1359 ----GYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQS 1414
Y VQ K+G D + + NL Y +V N + G+ S
Sbjct: 130 YNSWTYNVQYWKQGTDEK--FQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRN-KAGEWS 186
Query: 1415 GPVIVEEQPNKPV 1427
PV + ++ V
Sbjct: 187 EPVCEQTTHDETV 199
Score = 66.7 bits (162), Expect = 4e-12
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 24/200 (12%)
Query: 82 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENL 137
P N+ +S N L+W +P G L + + + + + T +L
Sbjct: 4 PPENVRMNSVNFKNILQWESPAFAKGQ--LTFTAQYLSYRIFQDK-CMQTTLTECDFSSL 60
Query: 138 IEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 197
+ D+ RV+A S + G P + D + + + P
Sbjct: 61 SKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLA-----DCLHMRFLAP 115
Query: 198 KKDGGS---------PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 248
K + Y ++ + + + + +L+ Y +V
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 249 AVNKGGPGEPSKASAPVTCK 268
+ S PV +
Sbjct: 174 GFLPDRNK-AGEWSEPVCEQ 192
Score = 65.9 bits (160), Expect = 6e-12
Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 26/192 (13%)
Query: 499 NVTKES----CKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHR 554
NV S L W P G L + + + R T D L
Sbjct: 7 NVRMNSVNFKNILQWESPAFAKG--QLTFTAQYLS-YRIFQDKCMQTTLTECDFSSLSKY 63
Query: 555 KEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLND 614
++ RV+A + SD ++ T + V P + D + + + P +
Sbjct: 64 GDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVL-----ADCLHMRFLAPKIE 118
Query: 615 GGS---------PITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAV 665
Y +Q ++G ++ + +L Y +V
Sbjct: 119 NEYETWTMKNVYNSWTYNVQYWKQGTDEKF---QITPQYDFEVLRNLEPWTTYCVQVRGF 175
Query: 666 NEA--GPSEPSD 675
E S+
Sbjct: 176 LPDRNKAGEWSE 187
Score = 58.6 bits (141), Expect = 2e-09
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 19/156 (12%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVR 1582
PPEN+ + L W P G + + Y + T
Sbjct: 4 PPENVRMNSV-NFKNILQWESPAFAKGQ--LTFTAQYLSYRI--FQDKCMQTTLTECDFS 58
Query: 1583 NLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWS 1642
+L+ + RV AE S PG V+ D + + +
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQ-----VEVLADCLHMRFL 113
Query: 1643 KPRHDGGS---------PIQRYIVEKRLISDDKWIK 1669
P+ + Y V+ D+ +
Sbjct: 114 APKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ 149
Score = 47.8 bits (113), Expect = 9e-06
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIA 249
L+W P G + + Y ++ C+ T T L + ++ RV A
Sbjct: 19 LQWESPAFAKGQLT--FTAQYL-SYRIFQDKCM---QTTLTECDFSSLSKYGDHTLRVRA 72
Query: 250 VNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTI 309
+ + + P ++ + L++ TWT+
Sbjct: 73 EFADEHSDWVQITFSPVDDTIIGPPGMQ------VEVLADCLHMRFLAPKIENEYETWTM 126
Query: 310 D 310
Sbjct: 127 K 127
Score = 47.0 bits (111), Expect = 2e-05
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAEN 1120
L W+ P G + + Y S F K D L + RVRAE
Sbjct: 19 LQWESPAFAKGQ--LTFTAQ-YLSYRIFQDKCMQ-TTLTECDFSSLSKYGDHTLRVRAEF 74
Query: 1121 QYGVSEPLELDNSITAKFPFTVPDPPGQPQ----IVDWDTNNATLMWDRPRTDGGSKIQG 1176
S+ +++ S P + + + ++
Sbjct: 75 ADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWT 134
Query: 1177 YKVEFRSTRT 1186
Y V++ T
Sbjct: 135 YNVQYWKQGT 144
Score = 46.7 bits (110), Expect = 2e-05
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG 1387
PPE +++ L W P G + Q
Sbjct: 4 PPENVRMN-SVNFKNILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQTT--LTECDFS 58
Query: 1388 NLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRD 1435
+LS+ ++T RV A +S+ + + + + P M + + D
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106
Score = 46.3 bits (109), Expect = 3e-05
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 12/136 (8%)
Query: 590 APEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKI 649
PE + + L W+ P G + Q + T+
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQ--LTFTAQYLSYRIFQDK---CMQTTLTECDF 57
Query: 650 PDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVE 709
L+K ++ RV A S+ + + P ++ + L++
Sbjct: 58 SSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQ------VEVLADCLHMR 111
Query: 710 IQFIGEPPPEVTWTID 725
TWT+
Sbjct: 112 FLAPKIENEYETWTMK 127
Score = 45.5 bits (107), Expect = 6e-05
Identities = 17/149 (11%), Positives = 37/149 (24%), Gaps = 13/149 (8%)
Query: 428 RYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDK 487
+ + Y + K + L++ + R+R E S+ + F
Sbjct: 32 TFTAQYLSYRIFQDKCMQTTLT--ECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPV 89
Query: 488 PSPPEGPLEVS-NVTKESCKLSWRVPVDDGGA---------PILHYIIEKMDISRGTWSD 537
GP + V + + + P + Y ++
Sbjct: 90 DDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ 149
Query: 538 AGMTVSLFYDVPRLIHRKEYLFRVKAVNS 566
F + L Y +V+
Sbjct: 150 -ITPQYDFEVLRNLEPWTTYCVQVRGFLP 177
Score = 33.2 bits (75), Expect = 0.58
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 1534 GDSLTLYWTPPRDNGGSEITN---------YVVEKKDYNSTVWTKVSSYVTTPFVRVRNL 1584
D L + + P+ E Y V+ + +++ F +RNL
Sbjct: 105 ADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT--PQYDFEVLRNL 162
Query: 1585 AIGSTYEFRVMA 1596
+TY +V
Sbjct: 163 EPWTTYCVQVRG 174
Score = 33.2 bits (75), Expect = 0.73
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 1015 VTGYSPSSVSLAWNPPANHGG-RPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSP 1073
S P + P + L + + P+ + + + +
Sbjct: 73 EFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNS 132
Query: 1074 ITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRA 1118
T Y V+ ++ T +++ + + LE Y +VR
Sbjct: 133 WT-YNVQYWKQGTDEKFQIT--PQYDFEVLRNLEPWTTYCVQVRG 174
Score = 31.2 bits (70), Expect = 2.5
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 926 DHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGK 970
L + + RVRAE S+ + V G
Sbjct: 52 LTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGP 96
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation,
transferase-transfer inhibitor complex; HET: 0F4; 2.20A
{Homo sapiens}
Length = 297
Score = 76.1 bits (188), Expect = 1e-14
Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 57/243 (23%)
Query: 1665 DKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV- 1723
HI + + E+G GAFG V + V
Sbjct: 8 HVQ------HIKRRDIV----------LKRELGEGAFGKVFLAECY--NLSPTKDKMLVA 49
Query: 1724 -------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGEL--FE 1774
+ K+ R E +++ L H ++ + D D ++++FE++ G+L F
Sbjct: 50 VKALKDPTLAARKDFQR-EAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108
Query: 1775 RITAPDY-------------KMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQT 1821
R PD ++ +++++ Q+ + ++ ++ +H D+ N +
Sbjct: 109 RAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGA 168
Query: 1822 RNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT---DMWAV 1873
VK+ DFG++ + + ++ G PE I+ +T D+W+
Sbjct: 169 NLL--VKIGDFGMSRDVYSTDYYRV-GGHTMLPIRWMPPESIMY----RKFTTESDVWSF 221
Query: 1874 GVL 1876
GV+
Sbjct: 222 GVI 224
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 76.5 bits (189), Expect = 1e-14
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN 1714
+I +L ++KW P +L+ + +G GAFG V G
Sbjct: 29 FIDPTQLPYNEKW------EFPRNNLQ----------FGKTLGAGAFGKVVEATAF--GL 70
Query: 1715 IFAAKFIPV--------SHNLEKELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFE 1765
+ V +H EKE + E+ IM+ L H ++NL A +++I E
Sbjct: 71 GKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 130
Query: 1766 FLSGGEL-------------FERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDV 1812
+ G+L + S +++++ QV + + + KN IH DV
Sbjct: 131 YCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDV 190
Query: 1813 KPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFY 1867
N++ + K+ DFGLA + + + A APE I + Y
Sbjct: 191 AARNVLLTNGH--VAKIGDFGLARDIMNDSNYIVKGN-ARLPVKWMAPESIFD----CVY 243
Query: 1868 T---DMWAVGVLAY 1878
T D+W+ G+L +
Sbjct: 244 TVQSDVWSYGILLW 257
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 73.1 bits (179), Expect = 1e-14
Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 38/185 (20%)
Query: 2024 EGQSVKFTCRVIAIATPTL--TWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFS 2081
G + TC + AT W LK+ +K + S
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL--------------PGQKTEFKVDS 57
Query: 2082 IQD--------------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAI-ATPTLT 2126
T+ + PR S EG++ C+ ++
Sbjct: 58 DDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 2127 WFHNNQELKQ------SVKFMKRYAGDDYTFVINRTKME-DRGEYIIRAENHYGYREEVV 2179
W+ + +F + I ME D G+Y + G + ++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 2180 FLNVQ 2184
L V+
Sbjct: 178 TLRVR 182
Score = 70.8 bits (173), Expect = 9e-14
Identities = 28/184 (15%), Positives = 43/184 (23%), Gaps = 39/184 (21%)
Query: 2107 EGQSVKFTCRVIAIATPTL--TWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEY 2164
G + TC + AT W LK+ + GEY
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFKVDSDDQWGEY 64
Query: 2165 IIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR-------------RANKY----DVIW 2207
+ + P + ++ D W
Sbjct: 65 SCVFLPEPMGT---ANIQLHGP---PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
Query: 2208 LHNNKEIKPSND------FAYSSVAHVHTLKIAEIFPE-DSGVYTCEAFNDEGESFSSCT 2260
+ F SS L I + E D G Y C + +G + T
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178
Query: 2261 LLVQ 2264
L V+
Sbjct: 179 LRVR 182
Score = 43.5 bits (102), Expect = 2e-04
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 1366 KKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNK 1425
KGG + +++P V + + EY+ + + E + + GP V+
Sbjct: 35 LKGGVVLKEDALPGQKTEFKVDSDDQWGEYS--CVFLPEPMGTANIQLHGPPRVKAVK-- 90
Query: 1426 PVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAF-WF-----ANDSIIDDSDTRVHKQLT 1479
+ GE + + P + W+ + ++++ S++R +
Sbjct: 91 --------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 1480 MNSASLVVKN-SQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
+ L ++N + +D GQYR + G D A + +RV
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 41.2 bits (96), Expect = 0.001
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTW-----TIDGKELKTDSVRTTVT 324
P++K I G+ + + PP + W + D + R V+
Sbjct: 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 325 SIGYHTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTVTV 364
S + ++ N +D G Y ++ G D+ T+ V
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 38.5 bits (89), Expect = 0.010
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAI-ATPTLTWFHNNQELKQSV--KFMKRYAGD 2064
PR S EG++ C+ ++ W+ +++ R+
Sbjct: 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 2065 DYTFYSSLR 2073
S L
Sbjct: 141 SSQGRSELH 149
Score = 35.8 bits (82), Expect = 0.078
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPP-EVTW-----TIDGKELKTDSVRTTVTSIG 742
P++K I G+ + + PP + W + D + R V+S
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 743 YHTIVNTVN-TKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ ++ N +D G Y ++ G D+ T+
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 34.2 bits (78), Expect = 0.30
Identities = 9/70 (12%), Positives = 14/70 (20%), Gaps = 13/70 (18%)
Query: 299 GEPPPEV--TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 356
W G LK D++ T G Y
Sbjct: 24 DSATEVTGHRWLKGGVVLKEDALPGQKTEF--------KVDSDDQWGEYSCVFLPEPM-- 73
Query: 357 EGSFTVTVLE 366
G+ + +
Sbjct: 74 -GTANIQLHG 82
Score = 33.8 bits (77), Expect = 0.38
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 2263 VQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
W K G + +D Q K + + D G+YS
Sbjct: 30 TGHRWLKGGVVLKEDALPGQ--------KTEFKVDSDDQWGEYS 65
Score = 33.1 bits (75), Expect = 0.64
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 19/99 (19%)
Query: 714 GEPPPEV--TWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 771
W G LK D++ T G Y
Sbjct: 24 DSATEVTGHRWLKGGVVLKEDALPGQKTEF--------KVDSDDQWGEYSCVFLPEPM-- 73
Query: 772 EGSFTIVPDHLKNLWNTKKSLHP------VLHCRGNHLP 804
G+ I + K S H +L C+ +P
Sbjct: 74 -GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP 111
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte
antigen related, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 103
Score = 70.4 bits (173), Expect = 1e-14
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPP--ANHGGRPITGYYVEKRERGGEWLRANNYPTTNL 1282
P P VTG + S+ LAW+PP A GR I Y V R+ + N TT+
Sbjct: 8 PSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI--TTDT 64
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
FT+ L+ Y+ +V A G G S
Sbjct: 65 RFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQS 98
Score = 56.9 bits (138), Expect = 8e-10
Identities = 23/98 (23%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDG--GARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
P+ V +T + L+W PP G RI Y V R N T
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITTDTR--FT 67
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQP 1423
+ L Y +V A G G S + P
Sbjct: 68 LTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSRTMP 102
Score = 55.4 bits (134), Expect = 3e-09
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 581 ARNEFDEPD-APEKPTVKDWGEDFVDLAWKPPLNDG--GSPITDYIIQKKEKGNPYWMNA 637
+ P P+ V +LAW PP+ G I Y + ++ +
Sbjct: 1 GSSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQ---QE 56
Query: 638 LEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
L+ T + L Y+ +V A G S
Sbjct: 57 LQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP 94
Score = 48.8 bits (117), Expect = 7e-07
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDDG--GSPITNYVVEKYESATGFWSKLSSFV 1096
PS PQ L V+ +T + L+W PP+ G I +Y V + + + +
Sbjct: 6 SGPSGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITTD 63
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
+ + GL+ + Y +VRA G
Sbjct: 64 TR--FTLTGLKPDTTYDIKVRAWTSKGSGPL 92
Score = 48.5 bits (116), Expect = 8e-07
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRD---NGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 1579
P+NLH + L W PP NG I +Y V +D NS + + T
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAERNG--RIISYTVVFRDINSQQELQNITTDTR--F 66
Query: 1580 RVRNLAIGSTYEFRVMAENQYG 1601
+ L +TY+ +V A G
Sbjct: 67 TLTGLKPDTTYDIKVRAWTSKG 88
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 177 PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACIVPANITATSV 234
P VT +L W PP G I Y + + E T ++
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQ--NITTDTRFTL 68
Query: 235 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
LK Y+ +V A G G S + +
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPL---SPSIQSR 99
Score = 35.7 bits (83), Expect = 0.023
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRWVPMGDVSGTY 131
P+ L + +T S+ L W P G I+ Y V D+ + + + + T
Sbjct: 9 SGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQEL-QNITTDTR 65
Query: 132 TRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQ 162
L Y+ +V+A G S + +
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSR 99
Score = 35.0 bits (81), Expect = 0.050
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
PS P+ L V+ +T + +L+W + + I+ Y + DI+ +T
Sbjct: 6 SGPSGFPQN-LHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQN-ITTD 63
Query: 544 LFYDVPRLIHRKEYLFRVKAVNSIGES 570
+ + L Y +V+A S G
Sbjct: 64 TRFTLTGLKPDTTYDIKVRAWTSKGSG 90
Score = 33.4 bits (77), Expect = 0.16
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDG--GARIKGYIVQKRKKGGDWVDANSVPVPN 869
P+ V +T + L+W PP G RI Y V R N
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITTDTR 65
Score = 30.3 bits (69), Expect = 1.8
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 1896 VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
D + + L Y+ +V+A + G S +
Sbjct: 61 TTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS 95
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 70.7 bits (173), Expect = 2e-14
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVH 1384
D P +V T S+ +SW + + Y + G V +VP P
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSG 1415
T+ L G +YT V AV + G +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTY 90
Score = 68.0 bits (166), Expect = 1e-13
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
D P V + ++W Y I E G + VP
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
I L G +Y V AV + P +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 66.5 bits (162), Expect = 6e-13
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLNF 1284
D P EV +P+S+ ++W+ Y + E GG ++ P
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGRG----SYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 1285 TVHDLREGGKYEFRVIAINEAGPGKPSKPT 1314
T+ L+ G Y V A+ + P T
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 66.5 bits (162), Expect = 6e-13
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANIT 230
G D P V + + W + Y I G + VP +
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 231 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA---SAPVTCKPR 270
++ LK G +Y V AV P +P++ R
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYR 100
Score = 59.2 bits (143), Expect = 2e-10
Identities = 23/117 (19%), Positives = 32/117 (27%), Gaps = 12/117 (10%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
P+ L+V TP S +SW Y + Y G V P
Sbjct: 4 SDVPRD-LEVVAATPTSLLISWDSG----RGSYQYYRIT-YGETGGNSPVQEFTVPGPVH 57
Query: 1101 -YDVFGLETNRQYRFRVRAENQYGVSEPLELDNS---ITAKFPFTVPDPPGQPQIVD 1153
+ GL+ Y V A + I+ + T D P Q
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYR-TEIDKPSQHHHHH 113
Score = 54.9 bits (132), Expect = 7e-09
Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+ P L+ T +S + W + R +Y + + V V G
Sbjct: 3 VSDVPRD-LEVVAATPTSLLISWDSGRGS----YQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 133 RA--ENLIEGHDYNFRVKAVN---KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 184
A L G DY V AV + +SPI+ D+P Q
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTE-IDKPSQHHHHH 113
Score = 50.3 bits (120), Expect = 2e-07
Identities = 18/109 (16%), Positives = 26/109 (23%), Gaps = 14/109 (12%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK---VSSYVTTP 1577
P +L SL + W R Y + + + V V T
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHT- 58
Query: 1578 FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDP-----IKAKHPFDVP 1621
+ L G Y V A + I + D P
Sbjct: 59 -ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 47.2 bits (112), Expect = 3e-06
Identities = 22/116 (18%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV---SL 544
P LEV T S +SW +Y I + + TV
Sbjct: 4 SDVPRD-LEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQE-FTVPGPVH 57
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTT--VARNEFDEPDAPEKPTVKD 598
+ L +Y V AV T ++ N E D P +
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHHHH 113
Score = 46.4 bits (110), Expect = 6e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
D P +V T S+ +SW + + Y + + GG+ VP PVHT
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNS-PVQEFTVPGPVHT 58
Score = 37.2 bits (86), Expect = 0.009
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTS 1679
V P + V +T S+ + W R Q Y + + ++ +P
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFT--VPGPV 56
Query: 1680 LKYT 1683
T
Sbjct: 57 HTAT 60
Score = 34.5 bits (79), Expect = 0.079
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 1142 VPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
V D P ++V + + WD R Q Y++ + T
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGET 41
Score = 34.5 bits (79), Expect = 0.085
Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP 955
Y I + T G V V H AT+ L G Y V A
Sbjct: 33 YYRITYGE-TGGNSPVQEFT-VPGPVHTATISGLKPGVDYTITVYAVTDHKPHAD 85
Score = 29.5 bits (66), Expect = 4.3
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 427 SRYIIEMAEYGLDNWK---TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPL 483
Y I E G ++ TVPG P T+ GL G Y + +
Sbjct: 32 QYYRITYGETGGNSPVQEFTVPG--PVHTATISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Query: 484 FPDKPS 489
+ + P
Sbjct: 90 YHESPI 95
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich,
C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 70.1 bits (172), Expect = 2e-14
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFV 2152
+ V++P+ G +V TC V A +P + W + L +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------PSPVLI 60
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ +D+G Y A + +E +++
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 57.8 bits (140), Expect = 4e-10
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ W+ + + L + EI P+D G Y+C A + S + +
Sbjct: 42 IHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Query: 2265 V 2265
+
Sbjct: 93 I 93
Score = 51.3 bits (123), Expect = 8e-08
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS 2054
+ V++P+ G +V TC V A +P + W + L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP 54
Score = 49.3 bits (118), Expect = 3e-07
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 271 FVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 328
++ + + G L E+ +P P++ W DG L +
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVP--AQPSPQIHWMKDGVPLPLPPSPVLILP--- 62
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGS--FTVTVLE 366
D GTY ++S + S +++++E
Sbjct: 63 -------EIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 44.7 bits (106), Expect = 2e-05
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 688 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
++ + + G L E+ +P P++ W DG L +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVP--AQPSPQIHWMKDGVPLPLPPSPVLILP----- 62
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
D GTY ++S + S +
Sbjct: 63 -----EIGPQDQGTYSCVATHSSHGPQESRAV 89
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 21/112 (18%)
Query: 1406 GNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDS 1465
G+S +V +P V G ++ A P P W +
Sbjct: 1 GSSGSSGLEEVQLVV-EP----------EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGV 49
Query: 1466 IIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
+ S L++ D G Y + + + V +
Sbjct: 50 PLPLP----------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 30.5 bits (69), Expect = 1.7
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
Q+ W KDG P+ P + + + D G YS
Sbjct: 41 QIHWMKDGVPLPLPP----------SPVLILPEIGPQDQGTYS 73
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 77.0 bits (190), Expect = 2e-14
Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 67/265 (25%)
Query: 1650 SPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRE 1709
+ + E L D +W +P L + + +G GAFG V
Sbjct: 47 QGMLAGVSEYELPEDPRW------ELPRDRLV----------LGKPLGEGAFGQVVLAEA 90
Query: 1710 RKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL-HHPKLINLHDAFEDDDE 1759
+ V + +LI E+++M + H +INL A D
Sbjct: 91 IGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS-EMEMMKMIGKHKNIINLLGACTQDGP 149
Query: 1760 MVLIFEFLSGGEL---------------FERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
+ +I E+ S G L + P+ ++S ++++ QV ++++
Sbjct: 150 LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS 209
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPV 1864
K IH D+ N++ N +K+ DFGLA + + K +T R PV
Sbjct: 210 KKCIHRDLAARNVLVTEDN--VMKIADFGLARDIHHIDYYKKTTNG----------RLPV 257
Query: 1865 ----------GFYT---DMWAVGVL 1876
YT D+W+ GVL
Sbjct: 258 KWMAPEALFDRIYTHQSDVWSFGVL 282
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 70.6 bits (173), Expect = 2e-14
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 1218 RIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGR-PITGYYVEKRERGGEWLRANN 1276
+ + PP P V + + V L W +TGY V R ++
Sbjct: 10 NVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL- 68
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
TN L Y V A + G G S+ I + P +
Sbjct: 69 --NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRI-----PRITSSGPSS 116
Score = 54.1 bits (130), Expect = 1e-08
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 16/119 (13%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPDPPEAP---KVDRITKDSVTLSWRPPK-HDGGARIKGYI 1361
G S ++ K PP P V T V L+W K + + + GY
Sbjct: 1 GSSGSSGTVNV------TTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYK 54
Query: 1362 VQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
V R + V + N L E+Y V A + G G S + +
Sbjct: 55 VFYRTSSQNNVQVLNT---NKTSAELVLPIKEDYIIEVKATTDGG---DGTSSEQIRIP 107
Score = 47.5 bits (113), Expect = 2e-06
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 166 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACI 224
T K P P +P V + V L W K + S ++ Y + + + +
Sbjct: 13 TKKTP---PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--V 67
Query: 225 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 259
+ N T+ + L E+Y V A GG G S
Sbjct: 68 LNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
Score = 46.8 bits (111), Expect = 4e-06
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 1039 TDKPSPPQGPLDVS-DITPESCSLSWKP-PLDDGGSPITNYVVEKYESATGFWSKLSSFV 1096
T K P Q P +V + T L+W+ + S +T Y V Y +++ + +
Sbjct: 13 TKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV-FYRTSS--QNNVQVLN 69
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ L Y V+A G S + P P
Sbjct: 70 TNKTSAELVLPIKEDYIIEVKATTDGGDGTS-----SEQIRIPRITSSGPS 115
Score = 44.8 bits (106), Expect = 2e-05
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKP-PLNDGGSPITDYIIQKKEKGNPYWMNALEVPANK 644
P P V + + V L W+ + S +T Y + + + NK
Sbjct: 16 TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV---LNTNK 72
Query: 645 TDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
T ++ L ++Y V A + G S+
Sbjct: 73 TSAELV-LPIKEDYIIEVKATTDGGDGTSSE 102
Score = 44.1 bits (104), Expect = 4e-05
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 1523 PPENLHADEFAGDSLTLYWTP-PRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRV 1581
PP N+ + L W SE+T Y V Y ++ V T
Sbjct: 21 PPGNVVW-NATDTKVLLNWEQVKAMENESEVTGYKVF---YRTSSQNNVQVLNTNKTSAE 76
Query: 1582 RNLAIGSTYEFRVMAENQYGLSKPALTIDPIK-AKHPFDVPGA 1623
L I Y V A G + + I+ + P +
Sbjct: 77 LVLPIKEDYIIEVKATTDGGDGTSS---EQIRIPRITSSGPSS 116
Score = 33.3 bits (76), Expect = 0.26
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 487 KPSPPEGP--LEVSNVTKESCKLSWR-VPVDDGGAPILHYIIE-KMDISRGTWSDAGMTV 542
K +PP P V N T L+W V + + + Y + +
Sbjct: 14 KKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKT 73
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGE---SDTLETTKTT 579
S +P ++Y+ VKA G+ S+ + + T
Sbjct: 74 SAELVLPIK---EDYIIEVKATTDGGDGTSSEQIRIPRIT 110
Score = 32.5 bits (74), Expect = 0.39
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1140 FTVPDPPGQ-PQIVDWDTNNATLM--WDR-PRTDGGSKIQGYKVEFRSTR 1185
T PP Q P V W+ + ++ W++ + S++ GYKV +R++
Sbjct: 12 TTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS 61
Score = 32.5 bits (74), Expect = 0.43
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 75 SPPEGPLKPSNI----TKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 129
+PP P P N+ T + L W + +++ Y V + V + + +
Sbjct: 16 TPPSQP--PGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV-FYRTSSQNNVQVLNTNK 72
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGE 155
T L DY VKA G+
Sbjct: 73 TSAE-LVLPIKEDYIIEVKATTDGGD 97
Score = 32.5 bits (74), Expect = 0.49
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 809 VKSRKPDPPEAPK--VDRITKDSVTLSWRPPK-HDGGARIKGYIVQKRKKGGDWVDANSV 865
V ++K P + P V T V L+W K + + + GY V R + V +
Sbjct: 11 VTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT 70
Query: 866 PVPNPVHTL 874
+ L
Sbjct: 71 NKTSAELVL 79
Score = 30.2 bits (68), Expect = 2.6
Identities = 9/30 (30%), Positives = 9/30 (30%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
T L DY VKA G S
Sbjct: 73 TSAELVLPIKEDYIIEVKATTDGGDGTSSE 102
Score = 30.2 bits (68), Expect = 2.7
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG---LSEPIT 957
GY + R + V N + L Y V+A G SE I
Sbjct: 52 GYKVFYRTSSQNNVQVLNTNK------TSAELVLPIKEDYIIEVKATTDGGDGTSSEQIR 105
Query: 958 T 958
Sbjct: 106 I 106
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 74.9 bits (185), Expect = 2e-14
Identities = 40/217 (18%), Positives = 85/217 (39%), Gaps = 42/217 (19%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
+EE+G FG V++ G + V L +E E + +L
Sbjct: 13 FMEELGEDRFGKVYKGHLF--GPAPGEQTQAVAIKTLKDKAEGPLREEFRH-EAMLRARL 69
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGEL---------------FERITAPDYKMSEAE 1787
HP ++ L D + +IF + S G+L + + +
Sbjct: 70 QHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPD 129
Query: 1788 VINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIS 1847
++ + Q+ ++++ +++H D+ N++ + + VK+ D GL ++ + K+
Sbjct: 130 FVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLN--VKISDLGLFREVYAADYYKLL 187
Query: 1848 TGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
+ APE I+ G ++ D+W+ GV+
Sbjct: 188 GN-SLLPIRWMAPEAIMY----GKFSIDSDIWSYGVV 219
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 69.7 bits (171), Expect = 3e-14
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 2/93 (2%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
P + P + + C+ P ++W + T
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--EQGTL 64
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I ++ D G Y A + G L+V
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 59.7 bits (145), Expect = 1e-10
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
P I + + ++ + G+P P ++W +G R T+ G I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI- 66
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
N + SD+GTY ++SG S + V E+
Sbjct: 67 --KNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 54.7 bits (132), Expect = 4e-09
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ WL + +++ TL+I + D+G YTC A + GE+ S L V
Sbjct: 40 ISWLKEGFTFPGRDP--RATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Query: 2265 VS 2266
S
Sbjct: 98 ES 99
Score = 52.4 bits (126), Expect = 4e-08
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P I + + ++ + G+P P ++W +G R T+ G I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI- 66
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGS 774
N + SD+GTY ++SG S
Sbjct: 67 --KNLRISDTGTYTCVATSSSGETSWS 91
Score = 50.1 bits (120), Expect = 2e-07
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ T+ + P P W D R +L +KN + S
Sbjct: 16 ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA---TIQEQGTLQIKNLRIS 72
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLD 1519
D G Y + +G + + + V +
Sbjct: 73 DTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 47.4 bits (113), Expect = 2e-06
Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
P + P + + C+ P ++W
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT--- 63
Query: 2069 YSSLRKLQIDRFSIQDT 2085
LQI I DT
Sbjct: 64 ------LQIKNLRISDT 74
Score = 30.1 bits (68), Expect = 2.0
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+SW K+G + G ++I + + D G Y+
Sbjct: 39 VISWLKEGFTFPGRDPRATIQEQGT---LQIKNLRISDTGTYT 78
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 75.4 bits (186), Expect = 3e-14
Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
++ +G GAFG V+ + G + V S E + + E I+++
Sbjct: 34 LIRGLGHGAFGEVYEGQVS--GMPNDPSPLQVAVKTLPEVCSEQDELDFLM-EALIISKF 90
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGEL--FERITAPDY----KMSEAEVINYMRQVC 1796
+H ++ ++ E ++GG+L F R T P ++ ++++ R +
Sbjct: 91 NHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIA 150
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTN-VKMIDFGLATKLDPNEVVKISTGTAEFA- 1854
+++ E + IH D+ N + K+ DFG+A + + G A
Sbjct: 151 CGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR-KGGCAMLPV 209
Query: 1855 ---APE-IVEREPVGFYT---DMWAVGVL 1876
PE +E G +T D W+ GVL
Sbjct: 210 KWMPPEAFME----GIFTSKTDTWSFGVL 234
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of
N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 75.9 bits (187), Expect = 3e-14
Identities = 54/273 (19%), Positives = 101/273 (36%), Gaps = 67/273 (24%)
Query: 1642 SKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAF 1701
++ +P+ + E L D KW P L + + +G G F
Sbjct: 51 TRLSSTADTPMLAGVSEYELPEDPKW------EFPRDKLT----------LGKPLGEGCF 94
Query: 1702 GVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL-HHPKLINLH 1751
G V + + V + +L+ E+++M + H +INL
Sbjct: 95 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS-EMEMMKMIGKHKNIINLL 153
Query: 1752 DAFEDDDEMVLIFEFLSGGEL---------------FERITAPDYKMSEAEVINYMRQVC 1796
A D + +I E+ S G L ++ P+ +M+ ++++ Q+
Sbjct: 154 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 213
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
++++ + IH D+ N++ N +K+ DFGLA ++ + K +T
Sbjct: 214 RGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDYYKKTTNG------ 265
Query: 1857 EIVEREPV----------GFYT---DMWAVGVL 1876
R PV YT D+W+ GVL
Sbjct: 266 ----RLPVKWMAPEALFDRVYTHQSDVWSFGVL 294
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of
N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo
sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A*
2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A*
3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A*
3ky2_A ...
Length = 334
Score = 75.4 bits (186), Expect = 3e-14
Identities = 56/273 (20%), Positives = 100/273 (36%), Gaps = 67/273 (24%)
Query: 1642 SKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAF 1701
H P+ + E L D KW P L + + +G GAF
Sbjct: 5 HHHHHHSQDPMLAGVSEYELPEDPKW------EFPRDKLT----------LGKPLGEGAF 48
Query: 1702 GVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL-HHPKLINLH 1751
G V + + V + +L+ E+++M + H +INL
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS-EMEMMKMIGKHKNIINLL 107
Query: 1752 DAFEDDDEMVLIFEFLSGGEL---------------FERITAPDYKMSEAEVINYMRQVC 1796
A D + +I E+ S G L ++ P+ +M+ ++++ Q+
Sbjct: 108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 167
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAP 1856
++++ + IH D+ N++ N +K+ DFGLA ++ + K +T
Sbjct: 168 RGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDYYKKTTNG------ 219
Query: 1857 EIVEREPV----------GFYT---DMWAVGVL 1876
R PV YT D+W+ GVL
Sbjct: 220 ----RLPVKWMAPEALFDRVYTHQSDVWSFGVL 248
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 75.4 bits (186), Expect = 3e-14
Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 49/218 (22%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
+ IG G FG V + R +K G + S + ++ E++++ +L
Sbjct: 29 FQDVIGEGNFGQVLKARIKKDG-----LRMDAAIKRMKEYASKDDHRDFAG-ELEVLCKL 82
Query: 1743 -HHPKLINLHDAFEDDDEMVLIFEFLSGGEL---------------FERITAPDYKMSEA 1786
HHP +INL A E + L E+ G L F + +S
Sbjct: 83 GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQ 142
Query: 1787 EVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKI 1846
+++++ V + ++ +K IH D+ NI+ K+ DFGL+ + V +
Sbjct: 143 QLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY--VAKIADFGLSRGQE----VYV 196
Query: 1847 STGTAEF----AAPE-IVEREPVGFYT---DMWAVGVL 1876
A E + YT D+W+ GVL
Sbjct: 197 KKTMGRLPVRWMAIESLNYS----VYTTNSDVWSYGVL 230
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain,
hormone-growth factor complex; 1.50A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A*
3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A*
3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A
3bu3_A* ...
Length = 322
Score = 75.0 bits (185), Expect = 4e-14
Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 52/248 (20%)
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN 1714
Y + D+W + + + E+G G+FG+V+ + G
Sbjct: 8 YFSAADVYVPDEW------EVAREKIT----------MSRELGQGSFGMVYEGVAK--GV 49
Query: 1715 IFAAKFIPV---------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 1765
+ V S E + E +M + + ++ L ++I E
Sbjct: 50 VKDEPETRVAIKTVNEAASMRERIEFLN-EASVMKEFNCHHVVRLLGVVSQGQPTLVIME 108
Query: 1766 FLSGGEL--FERITAPDY-------KMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPEN 1816
++ G+L + R P S +++I ++ + + +++ +H D+ N
Sbjct: 109 LMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARN 168
Query: 1817 IMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AAPE-IVEREPVGFYT--- 1868
M VK+ DFG+ + + + G +PE + + G +T
Sbjct: 169 CMVAEDF--TVKIGDFGMTRDIYETDYYR-KGGKGLLPVRWMSPESLKD----GVFTTYS 221
Query: 1869 DMWAVGVL 1876
D+W+ GV+
Sbjct: 222 DVWSFGVV 229
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein
C, immunoglobulin domain, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 69.3 bits (170), Expect = 4e-14
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 2092 AAPRFVIKPQSAF-CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
+ F A+ +G V+F + A + W+ N QE++ S K++ + G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 2151 FVINRTKMEDRGEYIIRAEN 2170
IN +M D EY + A +
Sbjct: 65 LFINNCQMTDDSEYYVTAGD 84
Score = 67.0 bits (164), Expect = 3e-13
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+V W N +EI+PS + + L I D Y A G+ S L V
Sbjct: 38 EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV 93
Query: 2264 Q 2264
+
Sbjct: 94 R 94
Score = 52.8 bits (127), Expect = 2e-08
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
+G L ++V WYK+G + Y F G + I + + D +Y
Sbjct: 22 KGGRVRFVVELADPKLEVKWYKNGQEIRPST-KYIFEHKGCQRILFINNCQMTDDSEYYV 80
Query: 2308 QMGGIIAAFSLNV 2320
G + L V
Sbjct: 81 TAGDEKCSTELFV 93
Score = 49.7 bits (119), Expect = 3e-07
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 2009 AAPRFVIKPQSAF-CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ F A+ +G V+F + A + W+ N QE++ S K++ + G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC--- 61
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
R L I+ + D
Sbjct: 62 ----QRILFINNCQMTDD 75
Score = 45.8 bits (109), Expect = 6e-06
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 273 APKIKTPLKDII-IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
L + G + ++ + +P EV W +G+E++ + + G I
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPST-KYIFEHKGCQRI 64
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ N + +D Y++ +G ++ S + V
Sbjct: 65 LFINNCQMTDDSEYYVT----AGDEKCSTELFVRS 95
Score = 42.0 bits (99), Expect = 2e-04
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 688 APKIKTPLKDII-IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
L + G + ++ + +P EV W +G+E++ + + G I
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPST-KYIFEHKGCQRI 64
Query: 747 VNTVNTKRSDSGTY 760
+ N + +D Y
Sbjct: 65 LFINNCQMTDDSEY 78
Score = 34.3 bits (79), Expect = 0.082
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 20/110 (18%)
Query: 1414 SGPVIVEEQPNKPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSD 1471
SG + V G F + + A P+ W+ N I S
Sbjct: 6 SGAAFAKILDP----------AYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPST 52
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ + L + N Q +D +Y + AG + + + V P
Sbjct: 53 -KYIFEHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 69.0 bits (169), Expect = 4e-14
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV-- 1383
P +V T S+ +SW + + Y + + GG+ VP
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNS-PVQEFTVPGSSST 59
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
T+ LS G +YT V A + P +
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYY--SYSPSSI 93
Score = 68.6 bits (168), Expect = 7e-14
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P K V + ++W S ++ Y I E G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPS 674
I L+ G +Y V A S
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 67.0 bits (164), Expect = 2e-13
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE-WLRANNYPTTNLN 1283
P++ EV +P+S+ ++W+ + ++ Y + E GG ++ P ++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPS 1311
T+ L G Y V A S
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 63.6 bits (155), Expect = 3e-12
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 232
P + V + + W S +S Y I G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 233 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
++ L G +Y V A S +P +
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYS--YSPSS 92
Score = 60.5 bits (147), Expect = 4e-11
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA- 1100
S P L+V TP S +SW S ++ Y + Y G V +
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAS----SSSVSYYRIT-YGETGGNSPVQEFTVPGSSS 58
Query: 1101 -YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAK 1137
+ GL Y V A Y +SI +
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 50.5 bits (121), Expect = 2e-07
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTV---SL 544
S P LEV T S +SW + + +Y I + + TV S
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQE-FTVPGSSS 58
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVAR 582
+ L +Y V A S + + + R
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 49.7 bits (119), Expect = 3e-07
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 132
+ S P L+ T +S + W A + +Y + + V V G+ +
Sbjct: 4 VSSVPTK-LEVVAATPTSLLISWDASSSS----VSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 133 RA--ENLIEGHDYNFRVKAVNKIGESLP 158
A L G DY V A +
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYY 86
Score = 48.9 bits (117), Expect = 5e-07
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP--- 1577
P L SL + W S ++ Y + Y T T P
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRIT---YGETGGNSPVQEFTVPGSS 57
Query: 1578 -FVRVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L+ G Y V A Y +
Sbjct: 58 STATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 42.4 bits (100), Expect = 1e-04
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 811 SRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNP 870
S P +V T S+ +SW + + Y + + GG+ VP
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNS-PVQEFTVPGS 56
Query: 871 VHT 873
T
Sbjct: 57 SST 59
Score = 37.8 bits (88), Expect = 0.005
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL----SEPI 956
Y I + T G V V AT+ L G Y V A P
Sbjct: 34 YYRITYGE-TGGNSPVQEFT-VPGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPS 91
Query: 957 TT 958
+
Sbjct: 92 SI 93
Score = 33.9 bits (78), Expect = 0.082
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRST 1184
+V P + ++V + + WD S + Y++ + T
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGET 42
Score = 33.5 bits (77), Expect = 0.15
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
T + L G DY V A + S +
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 32.4 bits (74), Expect = 0.33
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 1620 VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1669
V P + V +T S+ + W S + Y + + ++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQ 49
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 72.8 bits (178), Expect = 5e-14
Identities = 34/197 (17%), Positives = 51/197 (25%), Gaps = 23/197 (11%)
Query: 481 DPLFPDKPS--PPEGPLEVSNVTKE----SCKLSWRVPVDDGGAPI---LHYIIEKMDIS 531
DP F K + GP E+ T+ C W G P Y +E
Sbjct: 9 DPKFESKAALLAARGPEELLCFTERLEDLVC--FWEEAASAGVGPGQYSFSYQLEDEPWK 66
Query: 532 RGTWS-----DAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFD 586
+ RV A + + V
Sbjct: 67 LCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV------ 120
Query: 587 EPDAPEKPTVKDWGE-DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
DAP + E V L W PP + Y + + +E+ +T
Sbjct: 121 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT 180
Query: 646 DVKIPDLTKGQEYEFRV 662
+ + +L Y F V
Sbjct: 181 ECVLSNLRGRTRYTFAV 197
Score = 66.3 bits (161), Expect = 7e-12
Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 20/205 (9%)
Query: 76 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDI---LHYVVEKMDMETGRWVPMGDVSGT 130
GP + T+ +L W G Y +E + R G
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 131 YTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW 185
+ RV A + ++ + + D P
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV------LLDAPVGLVARLA 133
Query: 186 G-KDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEY 243
HV L W PP + + +Y ++ G + + T + +L+ Y
Sbjct: 134 DESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRY 193
Query: 244 EFRVIAVNKGGP--GEPSKASAPVT 266
F V A G S+ S PV+
Sbjct: 194 TFAVRARMAEPSFGGFWSEWSEPVS 218
Score = 64.0 bits (155), Expect = 5e-11
Identities = 30/194 (15%), Positives = 42/194 (21%), Gaps = 17/194 (8%)
Query: 1216 QGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRAN 1275
+ ++ P + + W A+ G P Y + W
Sbjct: 11 KFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGP-GQYSFSYQLEDEPWKLCR 69
Query: 1276 NYPTTNLN--------FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPD 1327
+ D E RV A + A + V D
Sbjct: 70 LHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV------LLD 123
Query: 1328 PPEAPKV-DRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDAN-SVPVPNPVHT 1385
P V L W PP Y V G +
Sbjct: 124 APVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECV 183
Query: 1386 VGNLSEGEEYTFRV 1399
+ NL YTF V
Sbjct: 184 LSNLRGRTRYTFAV 197
Score = 56.6 bits (136), Expect = 1e-08
Identities = 23/175 (13%), Positives = 40/175 (22%), Gaps = 20/175 (11%)
Query: 1521 PHPPENLH--ADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 1578
PE L + L +W G Y + + T
Sbjct: 21 ARGPEELLCFTERLE--DLVCFWEEAASAGVG-PGQYSFSYQLEDEPWKLCRLHQAPTAR 77
Query: 1579 VRVRN--------LAIGSTYEFRVMAENQYGLSKPALTI-DPIKAKHPFDVPGAPGAPKG 1629
VR + E RV A + + I + + P +
Sbjct: 78 GAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLA---- 133
Query: 1630 VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTS 1684
+ L W P + RY V+ ++ T ++
Sbjct: 134 --DESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSN 186
Score = 50.1 bits (119), Expect = 2e-06
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 1497 QYRLQLK--NPAGFDTATLHVRVLDRPHPPENLHA-DEFAGDSLTLYWTPPRDNGGSEIT 1553
L++ + A +H+ + P L A + L W PP + +
Sbjct: 96 PLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHI 155
Query: 1554 NYVVEKKDYNST-VWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
Y V+ +V + NL + Y F V
Sbjct: 156 RYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197
Score = 47.0 bits (111), Expect = 2e-05
Identities = 18/139 (12%), Positives = 30/139 (21%), Gaps = 10/139 (7%)
Query: 1310 PSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGG 1369
P P + K PE + + W G Y + +
Sbjct: 5 PPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAA-SAGVGPGQYSFSYQLEDE 63
Query: 1370 DWVDANSVPVPNPVHTVGN--------LSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEE 1421
W P V S RV A + A V++ +
Sbjct: 64 PWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLD 123
Query: 1422 QP-NKPVMDLSGVRDITVK 1439
P + ++
Sbjct: 124 APVGLVARLADESGHVVLR 142
Score = 46.6 bits (110), Expect = 3e-05
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 1039 TDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSFVR 1097
P G + L W PP + + Y V+ G ++
Sbjct: 119 VVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEG 178
Query: 1098 SPAYDVFGLETNRQYRFRVRA 1118
+ L +Y F VRA
Sbjct: 179 RTECVLSNLRGRTRYTFAVRA 199
Score = 46.6 bits (110), Expect = 3e-05
Identities = 29/198 (14%), Positives = 43/198 (21%), Gaps = 26/198 (13%)
Query: 1125 SEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFR-S 1183
P D +K P + + W+ G Y ++
Sbjct: 3 FPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWE-EAASAGVGPGQYSFSYQLE 61
Query: 1184 TRTATDCGLGYQQCHADVGQTPHGWWLQDSRI---------------QGRIQSPFDP--- 1225
C L Q G L + R
Sbjct: 62 DEPWKLCRL--HQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEV 119
Query: 1226 --PDAPSQPEVTGYS-PSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRANNYPTTN 1281
DAP V L W PP Y V+ +G ++
Sbjct: 120 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGR 179
Query: 1282 LNFTVHDLREGGKYEFRV 1299
+ +LR +Y F V
Sbjct: 180 TECVLSNLRGRTRYTFAV 197
Score = 44.3 bits (104), Expect = 2e-04
Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 14/170 (8%)
Query: 1029 PPANHGGRPITDKPSPPQGPLDVSDITP--ESCSLSWKPPLDDGGSPIT---NYVVEKYE 1083
PP +GP ++ T E W+ G P +Y +E
Sbjct: 5 PPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEP 64
Query: 1084 SATGFWSKLSSFVRSPAY----DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFP 1139
+ + + + + RV A + I
Sbjct: 65 WKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHR-----VIHINEV 119
Query: 1140 FTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+ P G + ++ + L W P + Y+V+ + + A
Sbjct: 120 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGS 169
Score = 39.3 bits (91), Expect = 0.008
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 6/128 (4%)
Query: 439 DNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP-LDPLFPDKPSPPEGPLEV 497
V +C + R+ + + P G +
Sbjct: 75 TARGAVRFWC---SLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVAR 131
Query: 498 SNVTKESCKLSWRVPVDDGGAPILHYIIE--KMDISRGTWSDAGMTVSLFYDVPRLIHRK 555
L W P + + Y ++ + + + L R
Sbjct: 132 LADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRT 191
Query: 556 EYLFRVKA 563
Y F V+A
Sbjct: 192 RYTFAVRA 199
Score = 31.2 bits (70), Expect = 3.5
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 588 PDAPEKPTVKDWGEDFVDLA--WKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKT 645
PE+ + E DL W+ + G P + E + P +
Sbjct: 21 ARGPEELLC--FTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARG 78
Query: 646 DVK------IPDLTKGQEYEFRVIAVNEAGPSEPS 674
V+ D + E RV A + A
Sbjct: 79 AVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRV 113
Score = 30.8 bits (69), Expect = 3.7
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRA----ENLQGL----S 953
Y ++ G G V V + + L T Y F VRA + G S
Sbjct: 157 YEVDVSA-GQGAGSVQRVEILEG-RTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWS 214
Query: 954 EPITTKEP 961
EP++ P
Sbjct: 215 EPVSLLTP 222
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 72.4 bits (177), Expect = 5e-14
Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 25/194 (12%)
Query: 82 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-----KMDMETGRWVPMGDVSGTYT 132
P ++ S N L W G ++Y VE + + W+P S T
Sbjct: 9 APQQLSVLSTNMKHLLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 133 RA----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 188
+++ YN RV+A S + + P + PG D
Sbjct: 67 PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR--PGMEITKDGFHL 124
Query: 189 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 248
++LE P + + + G E +V + + ++ G Y +
Sbjct: 125 VIELEDLGP------QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQ 178
Query: 249 AVNK--GGPGEPSK 260
K G S+
Sbjct: 179 TFVKAIGRYSAFSQ 192
Score = 65.9 bits (160), Expect = 9e-12
Identities = 32/190 (16%), Positives = 49/190 (25%), Gaps = 21/190 (11%)
Query: 1244 LAWNPPANHGGRPITGYYVEKRERGGEWLRAN---------NYPTTNLNFTVHDLREGGK 1294
L W+P G Y VE + ++ + T D+
Sbjct: 24 LMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVT-DDITATVP 80
Query: 1295 YEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGG 1354
Y RV A + S K + ITKD L D G
Sbjct: 81 YNLRVRATLGSQTSAWS------ILKHPFNRQSTILTRPGMEITKDGFHLVIEL--EDLG 132
Query: 1355 ARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQS 1414
+ + + R++ G V + + G Y + +A S
Sbjct: 133 PQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGR-YSAFS 191
Query: 1415 GPVIVEEQPN 1424
VE Q
Sbjct: 192 QTECVEVQGE 201
Score = 62.0 bits (150), Expect = 2e-10
Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 26/193 (13%)
Query: 498 SNVTKES----CKLSWRVPVDDGGAPILHYIIE-----KMDISRGTWSDAGM---TVSLF 545
++ S L W + G ++Y +E + + W + T
Sbjct: 11 QQLSVLSTNMKHLLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPE 68
Query: 546 YDVPRLIHRKE-YLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFV 604
DV I Y RV+A S N + +
Sbjct: 69 CDVTDDITATVPYNLRVRATLGSQTSAWSILKHPF---NRQSTILTRPGMEITK-DGFHL 124
Query: 605 DLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIA 664
+ + P ++++ + + V + V + + G Y +
Sbjct: 125 VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQT 179
Query: 665 VNEA--GPSEPSD 675
+A S S
Sbjct: 180 FVKAIGRYSAFSQ 192
Score = 57.8 bits (139), Expect = 4e-09
Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 20/167 (11%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE-----KKDYNSTVWTKVS--SYVT 1575
P+ L L W+P G E Y VE + Y S +W S S
Sbjct: 9 APQQLSVLST-NMKHLLMWSPVIAPG--ETVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65
Query: 1576 TPFVRV-RNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTE 1634
P V ++ Y RV A S ++ KHPF+ G++ T+
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSIL------KHPFNRQSTILTRPGMEITK 119
Query: 1635 DSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLK 1681
D LV D G + ++V M +
Sbjct: 120 DGFHLVIE--LEDLGPQFE-FLVAYWRREPGAEEHVKMVRSGGIPVH 163
Score = 53.9 bits (129), Expect = 8e-08
Identities = 22/200 (11%), Positives = 46/200 (23%), Gaps = 28/200 (14%)
Query: 1140 FTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHA 1199
+ P Q ++ + + LMW G Y VE++ + +
Sbjct: 4 VAILPAPQQLSVLSTNMKH-LLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSW 60
Query: 1200 DVGQTPH-----GWWLQDSRIQGRIQS--------------PFDPPDAPSQPEVTGYSPS 1240
R+++ PF+ +
Sbjct: 61 CSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKD 120
Query: 1241 SVSLAWNPPANHGGRPITGYYVEKRERG-GEWLRANNYPTTNLNFTVHDLREGGKYEFRV 1299
L P + V R G + + + + G Y +
Sbjct: 121 GFHLVIELEDLG---PQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKA 177
Query: 1300 IAINEAGPGKPSKPTDIVQC 1319
+ G+ S + +C
Sbjct: 178 QTFVK-AIGRYSAFSQ-TEC 195
Score = 48.5 bits (115), Expect = 5e-06
Identities = 29/185 (15%), Positives = 44/185 (23%), Gaps = 25/185 (13%)
Query: 395 PDHLK-NLWNMKKSLH--PVLHCRGNHLPIMEAVKSRYIIEMA-EYGLDNWKTVPG---- 446
P L NMK L PV+ +E Y E Y W
Sbjct: 10 PQQLSVLSTNMKHLLMWSPVIAPGETVYYSVE-----YQGEYESLYTSHIWIPSSWCSLT 64
Query: 447 ---FCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKE 503
C T +T Y R+R S P +TK+
Sbjct: 65 EGPECD---VT-DDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKD 120
Query: 504 SCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS--LFYDVPRLIHRKEYLFRV 561
L + P +++ G M S + + + Y +
Sbjct: 121 GFHLVIELED---LGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKA 177
Query: 562 KAVNS 566
+
Sbjct: 178 QTFVK 182
Score = 44.3 bits (104), Expect = 1e-04
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 21/170 (12%)
Query: 169 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP--ISQYIIEKKPKYGPWEKACIVP 226
D P Q +V H+ L W+P G + +Y E + Y
Sbjct: 2 DEVAILPAPQQLSVLSTNMKHL-LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSW 60
Query: 227 -ANITATS---VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKD 282
+ D+ Y RV A S P + +
Sbjct: 61 CSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME---- 116
Query: 283 IIIKAGKILNVEIQFIGEPPPEVTWTI------DGKELKTDSVRTTVTSI 326
I K G L +E++ + P+ + + G E VR+ +
Sbjct: 117 -ITKDGFHLVIELE---DLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPV 162
Score = 40.8 bits (95), Expect = 0.002
Identities = 22/114 (19%), Positives = 30/114 (26%), Gaps = 16/114 (14%)
Query: 1061 LSWKPPLDDGGSPITNYVVE-----KYESATGFWSKLSSF--VRSPAYDV-FGLETNRQY 1112
L W P Y VE + + W S P DV + Y
Sbjct: 24 LMWSPV--IAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPY 81
Query: 1113 RFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRP 1166
RVRA S L K PF ++ + L+ +
Sbjct: 82 NLRVRATLGSQTSAWSIL------KHPFNRQSTILTRPGMEITKDGFHLVIELE 129
Score = 40.1 bits (93), Expect = 0.004
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 11/107 (10%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANS-VPVPNPVHTV 1386
P+ V T L W P G Y V+ + + ++ +P T
Sbjct: 9 APQQLSVL-STNMKHLLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65
Query: 1387 G-------NLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
G +++ Y RV A + S P +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR 112
Score = 34.7 bits (79), Expect = 0.20
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 1036 RPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF 1095
P + + P +IT + L + P ++V + G +
Sbjct: 101 HPFNRQSTILTRP--GMEITKDGFHLVIELE---DLGPQFEFLVAYWRREPGAEEHVKMV 155
Query: 1096 V-RSPAYDVFGLETNRQYRFRVRA 1118
+ +E Y + +
Sbjct: 156 RSGGIPVHLETMEPGAAYCVKAQT 179
Score = 33.1 bits (75), Expect = 0.70
Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 24/172 (13%)
Query: 583 NEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPA 642
+E AP++ +V + L W P Y ++ + + + + + +P+
Sbjct: 2 DEVAILPAPQQLSVLSTNMKHL-LMWSPV--IAPGETVYYSVEYQGEYESLYTSHIWIPS 58
Query: 643 NK-TDVKIP------DLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPL 695
+ + + P D+T Y RV A + S S + L
Sbjct: 59 SWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME-- 116
Query: 696 KDIIIKAGKILNVEIQFIGEPPPEVTWTI------DGKELKTDSVRTTVTSI 741
I K G L +E++ + P+ + + G E VR+ +
Sbjct: 117 ---ITKDGFHLVIELE---DLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPV 162
Score = 30.4 bits (68), Expect = 5.1
Identities = 7/77 (9%), Positives = 16/77 (20%), Gaps = 7/77 (9%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF-V 1579
+ G L + ++V V + V
Sbjct: 109 ILTRPGMEI-TKDGFHLVIELEDLGPQ-----FEFLVAYWRREPGAEEHVKMVRSGGIPV 162
Query: 1580 RVRNLAIGSTYEFRVMA 1596
+ + G+ Y +
Sbjct: 163 HLETMEPGAAYCVKAQT 179
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 72.0 bits (176), Expect = 6e-14
Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 33/190 (17%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQEL-----------KQSVKFMKRYAG-----DDYT 2150
E +V + +A W+ N + Y+G + +
Sbjct: 13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS 72
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEV-VFLNVQRKYDLPVIHYKNHRRANKYDVI--- 2206
+ M+D G Y + + R + V +V + P + N V
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 2207 ----------WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
WL N++ ++ + S + L+I I ED+G Y CE N
Sbjct: 133 LSNDIGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Query: 2257 S-SCTLLVQV 2265
S S L +
Sbjct: 191 SNSIKLDIIF 200
Score = 60.8 bits (147), Expect = 5e-10
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 34/191 (17%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNN------QELKQSVKFMKRYAGDDY----TFYSSLR 2073
E +V + +A W+ N + + + G Y YS+
Sbjct: 13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-G 71
Query: 2074 KLQIDRFSIQDT-------------------SFDRRQAAPRFVIKPQSAFCYEGQSVKFT 2114
L +++D F Q + ++ + E SV T
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLT 131
Query: 2115 CRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGY 2174
C + W N+Q L+ + + + ++ I+ K ED GEY N
Sbjct: 132 CLS-NDIGANIQWLFNSQSLQLTERM--TLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 2175 RE-EVVFLNVQ 2184
R + L++
Sbjct: 189 RRSNSIKLDII 199
Score = 51.2 bits (122), Expect = 7e-07
Identities = 26/215 (12%), Positives = 63/215 (29%), Gaps = 26/215 (12%)
Query: 1326 PDPPEAPKVDRIT-------KDSVTLSW-RPPKHDGGARIKGYIVQKRKKGGDWVDANSV 1377
PP+ + + + +W + I ++ +
Sbjct: 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 1378 PV-PNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDI 1436
+ N ++ + + + +E + V L V +
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENY----RRTQATVRFHVHQPVTQPFLQ-VTNT 120
Query: 1437 TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGG 1496
TVK + ++ W N + ++ L+ N++ L + +R D G
Sbjct: 121 TVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE---RMTLSQNNSILRIDPIKREDAG 176
Query: 1497 QYRLQLKNPAGF---DTATLHVRVLDRPHPPENLH 1528
+Y+ ++ NP ++ L + P + H
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDIIF-----DPHHHH 206
Score = 47.7 bits (113), Expect = 1e-05
Identities = 22/169 (13%), Positives = 41/169 (24%), Gaps = 42/169 (24%)
Query: 2176 EEVVFLNVQRKYDLPVIH-YKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHV---HTL 2231
V+ L L YK + A ++ AYS + +L
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIAR-FVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 2232 KIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV---------------------------- 2263
I +D GVYT + ++ +
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 2264 ------QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ W + + +Q ++I +D G+Y
Sbjct: 134 SNDIGANIQWLFNSQSLQLTE-RMTLSQNNSI--LRIDPIKREDAGEYQ 179
Score = 42.0 bits (98), Expect = 9e-04
Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 246 RVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFI-GEPPPE 304
+ ++ + A V + + + +K +V + + +
Sbjct: 87 TLDMTDENY----RRTQATVRFHVHQPVTQPFLQVTNTTVKELD--SVTLTCLSNDIGAN 140
Query: 305 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE-GSFTVT 363
+ W + + L+ R T++ ++ + KR D+G Y E+ N S +
Sbjct: 141 IQWLFNSQSLQLTE-RMTLSQNNSILRIDPI--KREDAGEYQCEISNPVSVRRSNSIKLD 197
Query: 364 VLE 366
++
Sbjct: 198 IIF 200
Score = 39.6 bits (92), Expect = 0.006
Identities = 20/176 (11%), Positives = 51/176 (28%), Gaps = 13/176 (7%)
Query: 600 GEDFVDLAW-KPPLNDGGSPITDYIIQKKEKGN-PYWMNALEVPANKTDVKIPDLTKGQE 657
AW K I ++ + + +N + + +T
Sbjct: 25 PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS-LLFQMITMKDM 83
Query: 658 YEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFI-GEP 716
+ + +E + + + + +K +V + + +
Sbjct: 84 GVYTLDMTDENYRRT----QATVRFHVHQPVTQPFLQVTNTTVKELD--SVTLTCLSNDI 137
Query: 717 PPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
+ W + + L+ R T++ ++ + KR D+G Y E+ N
Sbjct: 138 GANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPI--KREDAGEYQCEISNPVSVRR 190
Score = 36.2 bits (83), Expect = 0.074
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 18/125 (14%)
Query: 1437 TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDS---------------DTRVHKQLTMN 1481
V + + V + A W+ ++ D +++ +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 1482 SASLVVKNSQRSDGGQYRLQLKNPAGF-DTATLHVRVLDRPHPPENLHADEFA--GDSLT 1538
+ SL+ + D G Y L + + AT+ V P + DS+T
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 1539 LYWTP 1543
L
Sbjct: 130 LTCLS 134
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 74.2 bits (183), Expect = 6e-14
Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 57/255 (22%)
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN 1714
YI +L D KW P L + +G GAFG V G
Sbjct: 6 YIDPTQLPYDHKWE------FPRNRLS----------FGKTLGAGAFGKVVEATAY--GL 47
Query: 1715 IFAAKFIPV--------SHNLEKELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFE 1765
I + + V +H E+E + E+ +++ L +H ++NL A ++I E
Sbjct: 48 IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE 107
Query: 1766 FLSGGEL-----------------FERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNII 1808
+ G+L + + + +++++ QV + + + KN I
Sbjct: 108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI 167
Query: 1809 HLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTA---EFAAPE-IVEREPV 1864
H D+ NI+ K+ DFGLA + + + ++ APE I
Sbjct: 168 HRDLAARNILLTHGR--ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFN---- 221
Query: 1865 GFYT---DMWAVGVL 1876
YT D+W+ G+
Sbjct: 222 CVYTFESDVWSYGIF 236
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 68.9 bits (169), Expect = 6e-14
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWN-PPANHGGRPITGYYVEKRERGGEWLRAN---NYPTT 1280
P P S + + L W P+++ PI G+Y+ R + +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPSKP 1313
+ L+ Y+ ++ NE G + S
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 59.3 bits (144), Expect = 1e-10
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1328 PPEAPKVDRITKDSVTLSWR-PPKHDGGARIKGYIVQKRKKGGDWVDAN---SVPVPNPV 1383
P + ++ + L W P + I+G+ + R D V
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
H +G+L Y ++ NE G SE S +I E
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEF---SNVMICE 100
Score = 54.7 bits (132), Expect = 6e-09
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 590 APEKPTVKDWGEDFVDLAWK-PPLNDGGSPITDYIIQKKEKGNPYWMNALE--VPANKTD 646
P + + + L W P ++ +PI + I + + + V +K
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
I L Y+ ++ NE G SE S+
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSN 95
Score = 48.1 bits (115), Expect = 1e-06
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 190 VDLEWT-PPKKDGGSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEGEEYEF 245
+ L+WT P + +PI + I +P + V + + L+ Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDI 80
Query: 246 RVIAVNKGGPGEPSKASAPVTCK 268
++ N+GG E S + C+
Sbjct: 81 KMQCFNEGGESEF---SNVMICE 100
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 1523 PPENLHADEFAGDSLTLYWT-PPRDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTTPF 1578
P + + + + L WT P N + I + + N + + + + +
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 1579 VRVRNLAIGSTYEFRVMAENQYGLSKP 1605
+ +L ++Y+ ++ N+ G S+
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEF 93
Score = 47.4 bits (113), Expect = 2e-06
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 1044 PPQGPLDVS--DITPESCSLSWK-PPLDDGGSPITNYVV---EKYESATGFWSKLSSFVR 1097
P GP ++ L W P + +PI + + + +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
+ + L+ Y +++ N+ G SE
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEF 93
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKMDISRGTWSDAGMTV---- 542
+ P V+ L W +P + PI + I SD V
Sbjct: 5 ITGPHI-AYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGES 570
++ + L Y +++ N GES
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGES 91
Score = 37.0 bits (86), Expect = 0.009
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 75 SPPEGPLKPSN-----ITKSSCNLEWRA-PRDDGGTDILHYVV--EKMDMETGRWVPMGD 126
S P P ++ + L+W P + T I + + D +
Sbjct: 2 STPITG--PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59
Query: 127 VSGTYTRA--ENLIEGHDYNFRVKAVNKIGES 156
V G+ +L Y+ +++ N+ GES
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGES 91
Score = 36.6 bits (85), Expect = 0.014
Identities = 17/148 (11%), Positives = 34/148 (22%), Gaps = 58/148 (39%)
Query: 816 PPEAPKVDRITKDSVTLSWR-PPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTL 874
P + ++ + L W P + I+G+
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFY------------------------- 41
Query: 875 LSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRL 934
I Y D + + V V + L
Sbjct: 42 --IYY-------------------------RPTDSDNDSDYKRDV--VEGSKQWHMIGHL 72
Query: 935 LEGTTYEFRVRAENLQG---LSEPITTK 959
T+Y+ +++ N G S + +
Sbjct: 73 QPETSYDIKMQCFNEGGESEFSNVMICE 100
Score = 30.4 bits (69), Expect = 1.8
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 1141 TVPDPPGQPQIVDWDTNNAT---LMWDR-PRTDGGSKIQGYKVEFRSTRTATD 1189
+ P P I + + T L W P ++ + IQG+ + +R T + D
Sbjct: 2 STPITG--PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDND 52
Score = 29.6 bits (67), Expect = 2.8
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
+++ L Y+ +++ N G S+ S+
Sbjct: 66 WHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 68.9 bits (169), Expect = 6e-14
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 2091 QAAPRFVIKPQSAF-CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSV-KFMKRYAGDD 2148
+ + F K + A+ +G ++ T + A + W N QE++ S K++ G
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 2149 YTFVINRTKMEDRGEYIIRAEN 2170
T I++ + D Y
Sbjct: 72 RTLTISQCSLADDAAYQCVVGG 93
Score = 65.5 bits (160), Expect = 9e-13
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 2204 DVIWLHNNKEIKPSND-FAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+V WL N +EI+ S + + S+ TL I++ D Y C G S L
Sbjct: 46 EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELF 101
Query: 2263 VQ 2264
V+
Sbjct: 102 VK 103
Score = 56.6 bits (137), Expect = 1e-09
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
+G + L +V W K+G + + Y F IG + I +L D Y
Sbjct: 30 KGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
Query: 2308 QMGGIIAAFSLNV 2320
+GG + L V
Sbjct: 90 VVGGEKCSTELFV 102
Score = 53.9 bits (130), Expect = 1e-08
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 2008 QAAPRFVIKPQSAF-CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
+ + F K + A+ +G ++ T + A + W N QE++ S G Y
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMS--------GSKY 63
Query: 2067 TFYS--SLRKLQIDRFSIQDT 2085
F S + R L I + S+ D
Sbjct: 64 IFESIGAKRTLTISQCSLADD 84
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 273 APKIKTPLKDII-IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
+ + L+ + G + + ++ + + EV W +G+E++ + SIG
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ +D Y G ++ S + V E
Sbjct: 74 LTISQCSLADDAAYQCV----VGGEKCSTELFVKE 104
Score = 45.8 bits (109), Expect = 8e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 688 APKIKTPLKDII-IKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ + L+ + G + + ++ + + EV W +G+E++ + SIG
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIG---- 69
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
L + S D+ ++ V
Sbjct: 70 -----------AKRTLTISQCSLADDAAYQCV 90
Score = 39.3 bits (92), Expect = 0.002
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 1437 TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGG 1496
V G + V +A W N I S ++ + +L + +D
Sbjct: 27 QVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 1497 QYRLQLKNPAGFDTATLHVR 1516
Y+ + + L V+
Sbjct: 86 AYQCVVGGEKC--STELFVK 103
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 68.9 bits (169), Expect = 7e-14
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
V W ++ ++ + + L+I + ED+G Y C G+ +S L V
Sbjct: 48 PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV 103
Query: 2264 QV 2265
+
Sbjct: 104 RA 105
Score = 68.2 bits (167), Expect = 1e-13
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2149
R +F ++ EG + C + + W+ ++ L+ + R G
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGARC 73
Query: 2150 TFVINRTKMEDRGEYIIRAEN 2170
I ED GEY+
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGK 94
Score = 51.2 bits (123), Expect = 1e-07
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
R +F ++ EG + C + + W+ ++ L+ + R G
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGA-- 71
Query: 2067 TFYSSLRKLQIDRFSIQDT 2085
+LQI +D
Sbjct: 72 -----RCELQIRGLVAEDA 85
Score = 51.2 bits (123), Expect = 1e-07
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 2252 EGESFS-SCTL--LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQ 2308
EG + C L + V W+K + D + Q G +++I +D G+Y
Sbjct: 33 EGATAVLRCELSKMAPVEWWKGHETLRDGD-RHSLRQDGARCELQIRGLVAEDAGEYLCM 91
Query: 2309 MGGIIAAFSLNV 2320
G + L V
Sbjct: 92 CGKERTSAMLTV 103
Score = 50.4 bits (121), Expect = 3e-07
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 256 GEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKE 313
G + SA +T + K L++ G +L E+ V W +
Sbjct: 4 GSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCEL----SKMAPVEWWKGHET 57
Query: 314 LKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
L+ D R ++ G + D+G Y G++ S +TV
Sbjct: 58 LR-DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105
Score = 45.0 bits (107), Expect = 2e-05
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 22/94 (23%)
Query: 687 LAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH 744
L K L++ G +L E+ V W + L+ H
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCEL----SKMAPVEWWKGHETLRDG---------DRH 64
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
++ R D L++R D G + +
Sbjct: 65 SL-------RQDGARCELQIRGLVAEDAGEYLCM 91
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 1403 NEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFA 1462
+ + G+ S + V P+ G+R+ G + W+
Sbjct: 2 SSGSS---GRTSAMLTVRA---LPIKFTEGLRNEEATEGATAVLRC--ELSKMAPVEWWK 53
Query: 1463 NDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPH 1522
+ D D R + L ++ D G+Y G + + + V P
Sbjct: 54 GHETLRDGD-RHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108
Query: 1523 PPE 1525
P
Sbjct: 109 GPS 111
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 74.3 bits (183), Expect = 8e-14
Identities = 48/265 (18%), Positives = 96/265 (36%), Gaps = 58/265 (21%)
Query: 1644 PRHDGGSPIQRYIVE--KRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAF 1701
P GS +Q +I+E + HI + + E+G GAF
Sbjct: 11 PTEGKGSGLQGHIIENPQYFSDACVH------HIKRRDIV----------LKWELGEGAF 54
Query: 1702 GVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIMNQLHHPKLINLHDA 1753
G V + + V S + ++ R E +++ L H ++
Sbjct: 55 GKVFLAECH--NLLPEQDKMLVAVKALKEASESARQDFQR-EAELLTMLQHQHIVRFFGV 111
Query: 1754 FEDDDEMVLIFEFLSGGEL--FERITAPDY------------KMSEAEVINYMRQVCEAV 1799
+ ++++FE++ G+L F R PD + +++ QV +
Sbjct: 112 CTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGM 171
Query: 1800 KHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEF----AA 1855
++ + +H D+ N + VK+ DFG++ + + ++ G
Sbjct: 172 VYLAGLHFVHRDLATRNCLVGQGLV--VKIGDFGMSRDIYSTDYYRV-GGRTMLPIRWMP 228
Query: 1856 PE-IVEREPVGFYT---DMWAVGVL 1876
PE I+ +T D+W+ GV+
Sbjct: 229 PESILY----RKFTTESDVWSFGVV 249
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 68.6 bits (168), Expect = 8e-14
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 2092 AAPRFVIKPQ---SAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2148
+ P ++ PQ S + V TC + + TW+ + Q++++S + + G
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRK 64
Query: 2149 YTFVINRTKMEDRGEYIIRAEN 2170
+ ++ K++D GE+ R E
Sbjct: 65 HRLILPEAKVQDSGEFECRTEG 86
Score = 65.5 bits (160), Expect = 9e-13
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W + ++++ S H L + E +DSG + C + + V
Sbjct: 40 PATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTV 95
Query: 2264 QV 2265
Q
Sbjct: 96 QD 97
Score = 52.8 bits (127), Expect = 2e-08
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
E +C L +WYKDG V + G+ +++ + + D G++
Sbjct: 24 TSERVVLTCELSRVDFPATWYKDGQKVEESEL-LVVKMDGRKHRLILPEAKVQDSGEFEC 82
Query: 2308 QMGGIIAAFSLNV 2320
+ G+ A F + V
Sbjct: 83 RTEGVSAFFGVTV 95
Score = 50.1 bits (120), Expect = 3e-07
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 261 ASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVR 320
S+ + ++P+ + + + + + + TW DG++++ +S
Sbjct: 1 GSSGSSGPVHILSPQ---DKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVE-ESEL 55
Query: 321 TTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
V G + K DSG + + F VTV +
Sbjct: 56 LVVKMDGRKHRLILPEAKVQDSGEFECR----TEGVSAFFGVTVQD 97
Score = 48.9 bits (117), Expect = 6e-07
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 2009 AAPRFVIKPQ---SAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
+ P ++ PQ S + V TC + + TW+ + Q++++S + + G
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGR- 63
Query: 2066 YTFYSSLRKLQIDRFSIQDT 2085
+L + +QD+
Sbjct: 64 ------KHRLILPEAKVQDS 77
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 689 PKIKTP--LKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
I +P + + + + + + TW DG++++ +S V G
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVE-ESELLVVKMDGRKHR 66
Query: 747 VNTVNTKRSDSGTY 760
+ K DSG +
Sbjct: 67 LILPEAKVQDSGEF 80
Score = 39.7 bits (93), Expect = 0.001
Identities = 11/95 (11%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 1434 RDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQ 1491
+T E + + + A W+ + +++S+ + ++ L++ ++
Sbjct: 18 VSLTFTTSERVVLTCEL---SRVDFPATWYKDGQKVEESE-LLVVKMDGRKHRLILPEAK 73
Query: 1492 RSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
D G++ + + + + V+ P P +
Sbjct: 74 VQDSGEFECRTEGVSA--FFGVTVQD---PSGPSS 103
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 72.8 bits (178), Expect = 9e-14
Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 17/181 (9%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
+ P + EG V C A TL ++ +K D+
Sbjct: 96 YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGR 155
Query: 2068 FYSSLRKLQIDRFSIQDTSFD--RRQAAPRFVI--KPQSAFCYEGQSVKFTCRVIAIATP 2123
+S L++ I R PR P + E C+ P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 215
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
L + + + R + G Y+ RA + G V +NV
Sbjct: 216 ELKCLKDGTFPLPI----------GESVTVTR---DLEGTYLCRARSTQGEVTREVTVNV 262
Query: 2184 Q 2184
Sbjct: 263 L 263
Score = 71.6 bits (175), Expect = 2e-13
Identities = 30/278 (10%), Positives = 65/278 (23%), Gaps = 66/278 (23%)
Query: 2024 EGQSVKFTCRVIAI---ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRF 2080
C + + + + +Q L +V + S+
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND--SFSAKASVSVTAEDEGTQ 74
Query: 2081 SIQ------DTSFDRR-----QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH 2129
+ + S + + P + EG V C A P
Sbjct: 75 RLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE----AHPRAKVTL 130
Query: 2130 NNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYG----YREEVVFLNVQR 2185
N + G ++ T ++ + A ++ + L V
Sbjct: 131 NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 182
Query: 2186 KYDLPVIHYKNHRRANKY------------------DVIWLHNNKEIKPSNDFAYSSVAH 2227
P + ++ + ++ L + P +
Sbjct: 183 G---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------- 231
Query: 2228 VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
+ + G Y C A + +GE T+ V
Sbjct: 232 -----SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 48.1 bits (114), Expect = 1e-05
Identities = 24/101 (23%), Positives = 27/101 (26%), Gaps = 17/101 (16%)
Query: 265 VTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVT 324
V PR + Q G P PE+ DG TVT
Sbjct: 180 VLYGPRLDER---DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT 236
Query: 325 SIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
R GTY R+T G TV VL
Sbjct: 237 --------------RDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 44.7 bits (105), Expect = 2e-04
Identities = 28/271 (10%), Positives = 60/271 (22%), Gaps = 82/271 (30%)
Query: 2107 EGQSVKFTCRVIAI---ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGE 2163
C + + + + +Q L +V + + + E
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAED-EGTQR 75
Query: 2164 YIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR-----------RANKYDVIWLHNNK 2212
+E + + + P + A+ N
Sbjct: 76 LTCAVILGNQSQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH-PRAKVTLNGV 133
Query: 2213 EIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND--------------------- 2251
+P A L + ++ ++C A +
Sbjct: 134 PAQPLGPRAQ--------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 2252 -------------EGESFS-SCTL----LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMK 2293
E + C L ++ KDG +
Sbjct: 186 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------------E 231
Query: 2294 ILSTTLDDVGQYS--AQ--MGGIIAAFSLNV 2320
++ T D G Y A+ G + ++NV
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 42.7 bits (100), Expect = 9e-04
Identities = 22/155 (14%), Positives = 35/155 (22%), Gaps = 21/155 (13%)
Query: 629 KGNPYWM---NALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQR 685
+ + + + + F A E + +
Sbjct: 123 HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL--RV 180
Query: 686 FLAPKIKTPLK--DIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGY 743
P++ + Q G P PE+ DG TVT
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT---- 236
Query: 744 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
R GTY R+T G T+
Sbjct: 237 ----------RDLEGTYLCRARSTQGEVTREVTVN 261
Score = 38.5 bits (89), Expect = 0.018
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 1452 AFPQPAA--FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1509
FP A D ++ + T + + ++ V ++ + +
Sbjct: 30 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV--TAEDEGTQRLTCAVILGNQSQ 87
Query: 1510 TATLHVRVLDRPHPPENLHADEF-AGDSLTL 1539
V + P P L E G +T+
Sbjct: 88 ETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 118
Score = 37.0 bits (85), Expect = 0.062
Identities = 30/253 (11%), Positives = 58/253 (22%), Gaps = 43/253 (16%)
Query: 1270 EWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
N+ + + +V EG I + + I P
Sbjct: 50 TVTYGNDSFSAKASVSVTAEDEGT-QRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP 108
Query: 1330 EAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNL 1389
E + VT+ A++ + P+ +
Sbjct: 109 EVSE-----GTEVTVKCEAH---PRAKVT------------LNGVPAQPLGPRAQLLLKA 148
Query: 1390 SE---GEEYTFRVIAVNEAGNSEPGK-QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFS 1445
+ G ++ A E K Q+ + V P + + + T +
Sbjct: 149 TPEDNGRSFS--CSATLEVAGQLIHKNQTRELRVLYGP--RLDERDCPGNWTWPENSQQT 204
Query: 1446 IHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNP 1505
P P + + R G Y + ++
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFPLPIGES--------------VTVTRDLEGTYLCRARST 250
Query: 1506 AGFDTATLHVRVL 1518
G T + V VL
Sbjct: 251 QGEVTREVTVNVL 263
Score = 30.8 bits (69), Expect = 5.4
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGE-PPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 331
P++ +P +++ V G P E + + + + T
Sbjct: 6 PPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA 62
Query: 332 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
+V + + + + E TVT+
Sbjct: 63 SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 96
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 73.3 bits (179), Expect = 1e-13
Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 27/202 (13%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATP----TLTWFHNNQELKQSVKFMKRYAGDD 2148
A I+ G T V T TW ++Q +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENNT 51
Query: 2149 YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD---- 2204
T + E+ G Y + ++ + + + +L V +
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 2205 ---VIWLHNNKEIKPSNDFAYS------SVAHVHTLKIAEIFPEDSGVYTCEAFNDEGES 2255
+ K + + YS + + I E + +GVYT + + + +S
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDS 171
Query: 2256 FSSCTLLVQVSWYKDGNPVSDD 2277
+S + + ++ V +
Sbjct: 172 AASASTKIMLATMNVDQDVVES 193
Score = 59.5 bits (143), Expect = 4e-09
Identities = 39/345 (11%), Positives = 77/345 (22%), Gaps = 90/345 (26%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATP----TLTWFHNNQELKQSVKFMKRYAGDD 2065
A I+ G T V T TW ++Q +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENNT 51
Query: 2066 YTFYSSLRKLQIDRFSIQD--------------------TSFDRRQAAPRFVIKPQSAFC 2105
T L + + ++ + +PQ +
Sbjct: 52 AT-------LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYV 104
Query: 2106 YEGQSVKFTCRVIA--------IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTK 2157
V+ V +W + I
Sbjct: 105 SSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFT 153
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPS 2217
+ G Y ++ + + +K +
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD--------------VVESKTVALG 199
Query: 2218 NDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDD 2277
N+ + + V + + P + Y EG Q+S G+ V +
Sbjct: 200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWY-LQREG----------QLSPTLIGSEVGEA 248
Query: 2278 PATYQFTQIGQTYKMKILSTTLDDVGQYS--AQMGGIIAAFSLNV 2320
+ T G + S T DD ++ A++ I ++ V
Sbjct: 249 LEGFSITPDGHLF---KESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 48.3 bits (114), Expect = 2e-05
Identities = 30/216 (13%), Positives = 70/216 (32%), Gaps = 29/216 (13%)
Query: 1435 DITVKAGEDFSIHV-PFMAFPQPAAF---WFANDSIIDDSDTRVHKQLTMNSASLVVKNS 1490
AG+ F++ P P+ W +D ++ N+A+L V ++
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-----------NTATLTVADA 59
Query: 1491 QRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADE----FAGDSLTLYWTPPRD 1546
+ G Y++ +++ + V +++ N+ + + + L+ T
Sbjct: 60 TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFS 119
Query: 1547 NGGSEITNYVVEKKDYNSTVWTKVSSYV-TTPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
G + NY + W+K + TT + ++ + V + S
Sbjct: 120 GGKTPADNYEL------HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAA 173
Query: 1606 ALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVW 1641
+ + K + + ISL +
Sbjct: 174 SAS---TKIMLATMNVDQDVVESKTVALGNEISLNY 206
Score = 47.5 bits (112), Expect = 3e-05
Identities = 20/156 (12%), Positives = 43/156 (27%), Gaps = 11/156 (7%)
Query: 225 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDII 284
N +V D ++V + + T +
Sbjct: 47 HENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL---IVNITEPQHFY 103
Query: 285 IKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDS 342
+ + L+ ++F G P + + K + V T I TI +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI---TIQEF---TADKN 157
Query: 343 GTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISS 378
G Y +++ S S + ++ + + S
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES 193
Score = 46.0 bits (108), Expect = 9e-05
Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 12/148 (8%)
Query: 634 WM-NALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIK 692
W + N + + D T ++V + + ++ +
Sbjct: 40 WTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL---IVNI 96
Query: 693 TPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV 750
T + + + L+ ++F G P + + K + V T I TI
Sbjct: 97 TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI---TIQEF- 152
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+G Y +++ S S +
Sbjct: 153 --TADKNGVYTVKVWGESEDSAASASTK 178
Score = 45.6 bits (107), Expect = 1e-04
Identities = 35/265 (13%), Positives = 69/265 (26%), Gaps = 32/265 (12%)
Query: 1270 EWLRAN-NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDP 1328
W + + + TV D ++V + +++ E
Sbjct: 39 TWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITE 98
Query: 1329 PEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKR-KKGGDWVDANSVPVPNPVHTVG 1387
P+ V ++ V L G Y + KG D +D T+
Sbjct: 99 PQHFYV--SSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI------TIQ 150
Query: 1388 NLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH 1447
+ + + V E+ +S S + D V TV G + S++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAA---SASTKIMLATMNV--DQDVVESKTVALGNEISLN 205
Query: 1448 VPFMA--------FPQPAA--FWFANDS-------IIDDSDTRVHKQLTMNSASLVVKNS 1490
P W+ I + + L +++
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESA 265
Query: 1491 QRSDGGQYRLQLKNPAGFDTATLHV 1515
D ++ K + T+ V
Sbjct: 266 TYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 43.7 bits (102), Expect = 5e-04
Identities = 19/155 (12%), Positives = 42/155 (27%), Gaps = 46/155 (29%)
Query: 2203 YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
W +++ + + TL +A+ E++G Y + + + +
Sbjct: 36 LTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVF 85
Query: 2263 VQVSWYK---------------------------DGNPVSDDPA-TYQF----TQIGQTY 2290
+ G +D+ Y + I T
Sbjct: 86 LMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ 145
Query: 2291 KMKILSTTLDDVGQYSAQ----MGGIIAAFSLNVV 2321
+ I T D G Y+ + A+ S ++
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIM 180
Score = 33.3 bits (75), Expect = 0.84
Identities = 30/260 (11%), Positives = 73/260 (28%), Gaps = 29/260 (11%)
Query: 122 VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 181
P + + T T + + +++V + + +S + + +P
Sbjct: 45 QPHENNTATLT-VADATSENAGSYKVTVQDTDTMT---SVESEVFLMEEAELIVNITEPQ 100
Query: 182 -VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG 240
+ V+L T G +P Y + W K V ++ +
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYS-----WSKGEDVIDTTQDITIQEFTAD 155
Query: 241 EEYEFRVIAVNKGGPGEPSKA----SAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ 296
+ + V + S + A + V K +I + ++
Sbjct: 156 KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
Query: 297 FIGEPPPEVTW------------TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGT 344
G P + + T+ G E+ ++T G+ + D+
Sbjct: 216 SSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESA---TYDDTAK 272
Query: 345 YHLELRNTSGRDEGSFTVTV 364
+ + ++ + V
Sbjct: 273 FWCVAKLYQQIEDETVEVAA 292
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U
twenty twenty, neurogenesis, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 118
Score = 68.6 bits (168), Expect = 1e-13
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2150
P P + + +C PT+ W + + +K+ ++
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL--ENGV 63
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
I K+ D G Y A G ++ VQ
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 57.9 bits (140), Expect = 6e-10
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 3/110 (2%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
P I+ + + + G P P + W DG + T R G I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI- 66
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISSKNMM 382
K D+G Y SG S + V E + N++
Sbjct: 67 --RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLI 114
Score = 57.9 bits (140), Expect = 7e-10
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
+ TV F + P P W + ++ D+R+ + + L ++ ++
Sbjct: 16 VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK---QLENGVLQIRYAKLG 72
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
D G+Y P+G T + ++ V + P +
Sbjct: 73 DTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104
Score = 55.5 bits (134), Expect = 5e-09
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
++W + + + L+I D+G YTC A GE+ S + VQ
Sbjct: 40 ILWRKDGVLVSTQDSRI--KQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Query: 2265 V 2265
Sbjct: 98 E 98
Score = 52.1 bits (125), Expect = 8e-08
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
P I+ + + + G P P + W DG + T R G I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI- 66
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
K D+G Y SG S I
Sbjct: 67 --RYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 47.8 bits (114), Expect = 2e-06
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
P P + + +C PT+ W + + +K+
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-- 63
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
LQI + DT
Sbjct: 64 -------LQIRYAKLGDT 74
Score = 31.3 bits (71), Expect = 1.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY 2305
+ W KDG VS + + + G ++I L D G+Y
Sbjct: 39 TILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRY 77
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein,
membrane, nucleotide-binding, phosphoprotein,
proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 74.0 bits (182), Expect = 1e-13
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
++ +G GAFG V+ + G + V S E + + E I+++
Sbjct: 75 LIRGLGHGAFGEVYEGQVS--GMPNDPSPLQVAVKTLPEVCSEQDELDFLM-EALIISKF 131
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGEL--FERITAPDY----KMSEAEVINYMRQVC 1796
+H ++ ++ E ++GG+L F R T P ++ ++++ R +
Sbjct: 132 NHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIA 191
Query: 1797 EAVKHMHEKNIIHLDVKPENIMCQTRNSTN-VKMIDFGLATKLDPNEVVKISTGTAEFA- 1854
+++ E + IH D+ N + K+ DFG+A + + G A
Sbjct: 192 CGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR-KGGCAMLPV 250
Query: 1855 ---APE-IVEREPVGFYT---DMWAVGVLAY 1878
PE +E G +T D W+ GVL +
Sbjct: 251 KWMPPEAFME----GIFTSKTDTWSFGVLLW 277
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 68.3 bits (167), Expect = 1e-13
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 2092 AAPRFVIKP---QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2148
+++ P + V TC + + W + +E+ +S + +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV 67
Query: 2149 YTFVINRTKMEDRGEYIIRAEN 2170
V+ ++ED GEY+ ++
Sbjct: 68 RRLVLPAVQLEDSGEYLCEIDD 89
Score = 65.2 bits (159), Expect = 2e-12
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+V W + +E+ S V L + + EDSG Y CE + +S T+ V
Sbjct: 43 EVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTV 98
Query: 2264 QV 2265
Sbjct: 99 TE 100
Score = 53.2 bits (128), Expect = 3e-08
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
E +C L +V W KDG V + PA + ++ + + L+D G+Y
Sbjct: 27 RLERVVLTCELCRPWAEVRWTKDGEEVVESPA-LLLQKEDTVRRLVLPAVQLEDSGEYLC 85
Query: 2308 QMGGIIAAFSLNV 2320
++ A+F++ V
Sbjct: 86 EIDDESASFTVTV 98
Score = 51.3 bits (123), Expect = 1e-07
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 262 SAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSV 319
S+ + + + + +L E+ P EV WT DG+E+ +S
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL---CRPWAEVRWTKDGEEV-VESP 57
Query: 320 RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + + DSG Y E+ + SFTVTV E
Sbjct: 58 ALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTE 100
Score = 48.6 bits (116), Expect = 9e-07
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 2009 AAPRFVIKP---QSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD 2065
+++ P + V TC + + W + +E+ +S + +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDT- 66
Query: 2066 YTFYSSLRKLQIDRFSIQDTSF------DRRQAAPRFVIKPQSAFCYEGQS 2110
+R+L + ++D+ D + V +P Y G S
Sbjct: 67 ------VRRLVLPAVQLEDSGEYLCEIDDESASFTVTVTEPPVRIIYSGPS 111
Score = 41.7 bits (98), Expect = 2e-04
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQ-FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTI 746
+ I P + + A ++ V + + P EV WT DG+E+ +S +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEV-VESPALLLQKEDTVRR 69
Query: 747 VNTVNTKRSDSGTY 760
+ + DSG Y
Sbjct: 70 LVLPAVQLEDSGEY 83
Score = 40.1 bits (94), Expect = 8e-04
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 1423 PNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNS 1482
+ ++ SG + E + + P W + + +S + Q
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTC-ELCRPWAEVRWTKDGEEVVESP-ALLLQKEDTV 67
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
LV+ Q D G+Y + ++A+ V V + P
Sbjct: 68 RRLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer
suppressor, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 124
Score = 68.5 bits (168), Expect = 1e-13
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPA--NHGGRPITGYYVEKRERGGEWLRANNYPTTNL 1282
P P + + S+ ++W PP G ITGY + R+ NL
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRRG-EMETLEPNNL 85
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
+ L +G +Y F+V A+ G G PS
Sbjct: 86 WYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTA 119
Score = 66.2 bits (162), Expect = 9e-13
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 19/129 (14%)
Query: 1299 VIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP----KVDRITKDSVTLSWRPP---KH 1351
+ N GPG + V D P AP ++ + S+ +SW PP
Sbjct: 4 GSSGNRYGPGVSTDDI-TVVTLS-----DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQ 57
Query: 1352 DGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPG 1411
+G I GY ++ RK + ++ N + L +G +Y+F+V A+ G G
Sbjct: 58 NG--FITGYKIRHRKTTRRG-EMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNG---TG 111
Query: 1412 KQSGPVIVE 1420
S E
Sbjct: 112 PPSNWYTAE 120
Score = 64.6 bits (158), Expect = 3e-12
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 561 VKAVNSIGESDTLETTKTTVARNEFDEPD-APEKPTVKDWGEDFVDLAWKPPLNDG--GS 617
+ N G + + D P P+ +++ + ++W PP + G
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLS---DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59
Query: 618 PITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
IT Y I+ ++ + N L KG +Y F+V A+ G PS+
Sbjct: 60 FITGYKIRHRKTTRRG--EMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 54.2 bits (131), Expect = 1e-08
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 147 VKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GS 203
+ N+ G + IT P P ++ + + W PP G
Sbjct: 4 GSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59
Query: 204 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
I+ Y I + + + N L++G +Y F+V A+ G G P S
Sbjct: 60 FITGYKIRHRKT-TRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP---SN 115
Query: 264 PVTCK 268
T +
Sbjct: 116 WYTAE 120
Score = 46.5 bits (111), Expect = 7e-06
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDDG--GSPITNYVVEKYESATGFWSKLSSFV 1096
D PS PPQ + + + S +SW PP G IT Y + ++ T +
Sbjct: 26 DVPSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNG-FITGYKI-RHRKTTRRGEMETLEP 82
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGV---SEPL 1128
+ Y GLE QY F+V A G S
Sbjct: 83 NNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
Score = 41.5 bits (98), Expect = 3e-04
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 1506 AGFDTATLHVRVL-DRPH-PPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVVEKK 1560
G T + V L D P PP+N+ + S+ + W PP NG IT Y + +
Sbjct: 12 PGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG--FITGYKIRHR 69
Query: 1561 DYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
+ + + L GS Y F+V A G
Sbjct: 70 K-TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNG 109
Score = 36.5 bits (85), Expect = 0.023
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 468 IRTENMYGASEPLDPLF----PDKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPIL 521
+ N YG D + D PS PP+ + + V S K+SW P I
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNGFIT 62
Query: 522 HYIIEKMDISRGTWSDAGMTVS---LFYDVPRLIHRKEYLFRVKAVNSIGE 569
Y I + T T+ L+Y L +Y F+V A+ G
Sbjct: 63 GYKIR---HRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGT 110
Score = 35.4 bits (82), Expect = 0.043
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 885 AEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRV 944
++G + GY I R T G + + P + L +G+ Y F+V
Sbjct: 53 PSGTQNGFIT------GYKIRHRKTTRRG----EMETLEPNNLWYLFTGLEKGSQYSFQV 102
Query: 945 RAENLQG---LSEPI--TTKE 960
A + G S T E
Sbjct: 103 SAMTVNGTGPPSNWYTAETPE 123
Score = 34.2 bits (79), Expect = 0.11
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 74 PS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
PS PP+ + + S + W P I Y + +T R M +
Sbjct: 28 PSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR--KTTRRGEMETLEPNN 84
Query: 132 TRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKD 169
L +G Y+F+V A+ G S + T ++
Sbjct: 85 LWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE---TPEN 124
Score = 32.7 bits (75), Expect = 0.45
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 816 PPEAPKVDRITKDSVTLSWRPP---KHDGGARIKGYIVQKRKKGGDW 859
PP+ ++ + S+ +SW PP +G I GY ++ RK
Sbjct: 31 PPQNVSLEVVNSRSIKVSWLPPPSGTQNG--FITGYKIRHRKTTRRG 75
Score = 31.5 bits (72), Expect = 1.1
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 1116 VRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNAT---LMWDRP-RTDGG 1171
+ N+YG + IT VP P PQ V + N+ + W P
Sbjct: 4 GSSGNRYGPGVS---TDDITVVTLSDVPSAP--PQNVSLEVVNSRSIKVSWLPPPSGTQN 58
Query: 1172 SKIQGYKVEFRST 1184
I GYK+ R T
Sbjct: 59 GFITGYKIRHRKT 71
Score = 28.8 bits (65), Expect = 8.6
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 1875 VLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
+ Y + + T + Y+ L +G Y F+V A G PS+
Sbjct: 61 ITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 67.4 bits (165), Expect = 1e-13
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+ + ++P S G ++ C + P WF N L +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLY 52
Query: 2152 VINRTKMEDRGEYIIRAENHYGYRE-EVVFLNVQ 2184
++ +E +G Y N ++ + V + +
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 52.3 bits (126), Expect = 3e-08
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
W N + + + E G Y C +ND S ++
Sbjct: 35 YQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 50.8 bits (122), Expect = 1e-07
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS 2054
+ + ++P S G ++ C + P WF N L
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 47
Score = 48.5 bits (116), Expect = 7e-07
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 274 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
+I + G L ++ +G P P W + L ++ + +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVP-------- 55
Query: 334 TVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
GTY + N + S V +
Sbjct: 56 --YVDLEHQGTYWCHVYNDRDSQD-SKKVEI 83
Score = 47.3 bits (113), Expect = 1e-06
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
+I + G L ++ +G P P W + L ++ + +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVP-------- 55
Query: 749 TVNTKRSDSGTYHLELRNTSGRDE 772
GTY + N +
Sbjct: 56 --YVDLEHQGTYWCHVYNDRDSQD 77
Score = 40.8 bits (96), Expect = 3e-04
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 24/109 (22%)
Query: 1414 SGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTR 1473
S I +P + G + + P P WF N+ + +
Sbjct: 2 SKLQICV-EP----------TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK 50
Query: 1474 VHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLD 1519
+ +V G Y + N + + L+
Sbjct: 51 L----------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 29.2 bits (66), Expect = 3.8
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
W+K+ P++ + + Y + L+ G Y
Sbjct: 34 HYQWFKNELPLTHET--------KKLY--MVPYVDLEHQGTYW 66
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich,
IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 67.4 bits (165), Expect = 2e-13
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+V W + K++ S+ +V L + + ++G Y+CEA G S L V
Sbjct: 41 EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Query: 2264 Q 2264
Sbjct: 97 A 97
Score = 65.1 bits (159), Expect = 1e-12
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI 2153
+ + G S +C V A A +TW+ + ++L S K G V+
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 2154 NRTKMEDRGEYIIRAEN 2170
+ + GEY A
Sbjct: 71 QQAGQAEAGEYSCEAGG 87
Score = 55.1 bits (133), Expect = 4e-09
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSA 2307
G S + SC + +V+WYKDG +S + +G T ++ + + G+YS
Sbjct: 25 AGASATLSCEVAQAQTEVTWYKDGKKLSSSS-KVRVEAVGCTRRLVVQQAGQAEAGEYSC 83
Query: 2308 QMGGIIAAFSLNV 2320
+ GG +F L V
Sbjct: 84 EAGGQQLSFRLQV 96
Score = 51.3 bits (123), Expect = 8e-08
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 259 SKASAPVTCKPRFVAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKT 316
S +S V K + +++ +AG L+ E+ + EVTW DGK+L +
Sbjct: 3 SGSSGKVV------FAKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKL-S 52
Query: 317 DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
S + V ++G + ++++G Y E +G + SF + V
Sbjct: 53 SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQV 96
Score = 47.4 bits (113), Expect = 2e-06
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
+ + G S +C V A A +TW+ + ++L S K G
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGC------ 64
Query: 2071 SLRKLQIDRFSIQDT 2085
R+L + + +
Sbjct: 65 -TRRLVVQQAGQAEA 78
Score = 45.5 bits (108), Expect = 1e-05
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 687 LAPKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH 744
+ K + +++ +AG L+ E+ + EVTW DGK+L + S + V ++G
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKL-SSSSKVRVEAVGCT 65
Query: 745 TIVNTVNTKRSDSGTY 760
+ ++++G Y
Sbjct: 66 RRLVVQQAGQAEAGEY 81
Score = 39.7 bits (93), Expect = 0.001
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 1412 KQSGPVIVEEQPNKPVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDD 1469
SG V+ ++ R++ +AG S V A Q W+ + +
Sbjct: 4 GSSGKVVFAKEQPAH-------REVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLSS 53
Query: 1470 SDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
S +V + + LVV+ + +++ G+Y + AG + ++V +
Sbjct: 54 SS-KVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAGQC 100
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 68.2 bits (167), Expect = 2e-13
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 8/109 (7%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYV--EKRERGGEWLRANNYPTTNL 1282
P AP + S +++ + W P G+ I GY V + +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQ-IQGYRVYYTMDPTQHVNNWMKHNVADSQ 76
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
T+ +L Y +V+A G G S + + P +
Sbjct: 77 ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV-----ITQTGSGPSS 120
Score = 65.5 bits (160), Expect = 1e-12
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKP-DPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQK 1364
G S P + Q EQ P P + ++ ++ + W+ P+ G +I+GY V
Sbjct: 1 GSSGSSGPV-LTQTSEQA--PSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYY 56
Query: 1365 RKKGGDWVDANSVPVPNPVH--TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQ 1422
V+ T+GNL + Y+ +V+A G G S + V Q
Sbjct: 57 TMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVITQ 113
Query: 1423 PNKP 1426
Sbjct: 114 TGSG 117
Score = 57.4 bits (139), Expect = 9e-10
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 586 DEP-DAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQ-KKEKGNPYWMNALEVPAN 643
P AP + + + WK P G I Y + + A+
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
I +L + Y +V+A G S
Sbjct: 75 SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 47.8 bits (114), Expect = 2e-06
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTTPFV 1579
P ++ A + ++ + W P + G +I Y V + W K + +
Sbjct: 21 APRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNV-ADSQIT 78
Query: 1580 RVRNLAIGSTYEFRVMAENQYG 1601
+ NL TY +V+A G
Sbjct: 79 TIGNLVPQKTYSVKVLAFTSIG 100
Score = 47.4 bits (113), Expect = 3e-06
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 177 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYII--EKKPKYGPWEKACIVPANITATSV 234
P + ++W P++ G I Y + P A+ T++
Sbjct: 22 PRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80
Query: 235 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
+L + Y +V+A G G S+ +
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDGPL---SSDIQVI 111
Score = 46.6 bits (111), Expect = 6e-06
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1098
PS P+ + ++ + + WK P + G I Y V T + +
Sbjct: 16 QAPSSAPRD-VQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVA 73
Query: 1099 PA--YDVFGLETNRQYRFRVRAENQYGV---SEPLE 1129
+ + L + Y +V A G S ++
Sbjct: 74 DSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ 109
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV---EKMDMETGRWVPMGDVSG 129
PS ++ ++ ++ ++W+ P + G I Y V W+
Sbjct: 17 APSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADS 75
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 170
T NL+ Y+ +V A IG+ S + T
Sbjct: 76 QITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI---TQTGS 116
Score = 40.9 bits (96), Expect = 5e-04
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLL 875
P + ++ ++ + W+ P+ G +I+GY V V+
Sbjct: 21 APRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITT 79
Score = 38.5 bits (90), Expect = 0.004
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII---EKMDISRGTWSDAGMTV 542
PS ++ ++ + + W+ P + G I Y + W +
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74
Query: 543 SLFYDVPRLIHRKEYLFRVKAVNSIGE 569
S + L+ +K Y +V A SIG+
Sbjct: 75 SQITTIGNLVPQKTYSVKVLAFTSIGD 101
Score = 30.1 bits (68), Expect = 3.5
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSST 1930
NW N + +L+ Y +V A + G SS
Sbjct: 63 HVNNWMKHNV--ADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 28.5 bits (64), Expect = 9.6
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 1140 FTVPDPPGQ-PQIVDWDTNNAT---LMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
T P P+ V ++T + W P G +IQGY+V + T
Sbjct: 12 QTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHV 64
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 67.5 bits (165), Expect = 2e-13
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF-----VINRTKMEDR 2161
V P L WF+N L +S + ++T ++ +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 2162 GEYIIRAENHYGYREEVVFLNVQRK 2186
G+Y + A+N YG E+ + +
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 65.9 bits (161), Expect = 7e-13
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
AP I T L+ + ++ G P P + W +G L T + HT
Sbjct: 2 HFAPTI-TFLESPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 331 IVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ N ++G Y L +N G+DE + +
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 59.4 bits (144), Expect = 1e-10
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 1438 VKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD----TRVHKQLTMNSASLVVKNSQRS 1493
+ + I P+PA WF N +I+++S T L + N
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ G Y L KN G D + + P
Sbjct: 73 NNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 59.0 bits (143), Expect = 2e-10
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
AP I T L+ + ++ G P P + W +G L T + HT
Sbjct: 2 HFAPTI-TFLESPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 746 IVNTV----NTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ N ++G Y L +N G+DE +
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
Score = 57.1 bits (138), Expect = 7e-10
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 2204 DVIWLHNNKEIKPSNDF-----AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSS 2258
+ W +N + S + + L++ ++G YT A N+ G+
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 2259 CTLLVQ 2264
+
Sbjct: 92 ISAHFM 97
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQ 2083
V P L WF+N L +S + ++T Y LQ+D +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG--CLQLDNPTHM 72
Query: 2084 DT 2085
+
Sbjct: 73 NN 74
Score = 32.8 bits (75), Expect = 0.24
Identities = 5/47 (10%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 2264 QVSWYKDGNPVSDDP----ATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ W+ +G +++ + +++ + T + G Y+
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 73.2 bits (180), Expect = 2e-13
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 31/195 (15%)
Query: 1689 HYDILEEIGTGAFGVVHRCRERKTGNI--------FAAKFIPVSHNLEKELI-------R 1733
+ + G+++ T F+ K L E
Sbjct: 43 QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKP 102
Query: 1734 KEIDIMNQLHHPKLI---NLHDAFEDDDEM-VLIFEFL--SGGELFERITAPDYKMSEAE 1787
+++ +L+ L+ D+ L+ L S + +P + +SE
Sbjct: 103 LQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDV--SPKHVLSERS 160
Query: 1788 VINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATK-LDPNEVVKI 1846
V+ ++ +A++ +HE +H +V ENI + + V + +G A + + V
Sbjct: 161 VLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAY 220
Query: 1847 S-------TGTAEFA 1854
G EF
Sbjct: 221 VEGSRSPHEGDLEFI 235
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative
splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 73.4 bits (180), Expect = 3e-13
Identities = 47/252 (18%), Positives = 89/252 (35%), Gaps = 65/252 (25%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL----- 1742
Y ++ ++G G F V + + A K + S E EI ++ +
Sbjct: 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMK-VVKSAEHYTETALDEIRLLKSVRNSDP 95
Query: 1743 HHP---KLINLHDAFE----DDDEMVLIFEFLSGGELFERITAPDYK-MSEAEVINYMRQ 1794
+ P ++ L D F+ + + ++FE L G L + I +Y+ + V ++Q
Sbjct: 96 NDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQ 154
Query: 1795 VCEAVKHMHEK-NIIHLDVKPENIMCQTRNST---------------------------- 1825
V + + ++H K IIH D+KPENI+
Sbjct: 155 VLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAP 214
Query: 1826 -------------------NVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPVGF 1866
VK+ D G A + + I T ++ + E++
Sbjct: 215 ATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTR--QYRSLEVLIGSGYNT 272
Query: 1867 YTDMWAVGVLAY 1878
D+W+ +A+
Sbjct: 273 PADIWSTACMAF 284
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 67.8 bits (166), Expect = 3e-13
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPA--NHGGRPITGYYVEKRERGGEWLRAN---NYPT 1279
P P + ++V ++W PP + G IT Y V GE +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
+ ++ + L + +Y V A + GPG S P +V+ E D P P
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDE-----DVPSGP 123
Score = 60.5 bits (147), Expect = 1e-10
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPD-PPEAPKVDRITKDSVTLSWRPPKHDG--GARIKGYIV 1362
G S + + P PP+ + +V +SW PP D G I Y V
Sbjct: 1 GSSGSSGTI-EARTAQST--PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNG-VITQYSV 56
Query: 1363 QKRKKGGDWVDAN---SVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
G+ + + + + L + EY V A + G PG +S PV+V
Sbjct: 57 AYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLV 113
Query: 1420 ---EEQPNKPVMDLSGV 1433
E+ P+ P +
Sbjct: 114 RTDEDVPSGPPRKVESG 130
Score = 50.8 bits (122), Expect = 3e-07
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 586 DEPD-APEKPTVKDWGEDFVDLAWKPP-LNDGGSPITDYIIQ-KKEKGNPYWMNALE-VP 641
P P+K G V ++W PP + IT Y + + G + ++ +
Sbjct: 16 STPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGIS 75
Query: 642 ANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ + L K EY V A + GP S
Sbjct: 76 REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS 109
Score = 47.8 bits (114), Expect = 3e-06
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 1523 PPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVV---EKKDYNSTVWTKVSSYVTT 1576
PP+ + ++ + W PP NG IT Y V +
Sbjct: 21 PPQKVMCVSMGSTTVRVSWVPPPADSRNG--VITQYSVAYEAVDGEDRGRHVVDGISREH 78
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDS 1636
+ L + Y V A G + P+ + DVP P P+ V+S S
Sbjct: 79 SSWDLVGLEKWTEYRVWVRAHTDVGPGPES---SPVLVRTDEDVPSGP--PRKVESGPSS 133
Score = 45.8 bits (109), Expect = 1e-05
Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
PS PPQ + + + +SW PP D IT Y V YE+ G
Sbjct: 16 STPSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSV-AYEAVDGEDRGRHVVDG 73
Query: 1098 SPA----YDVFGLETNRQYRFRVRAENQYGV---SEPLELDNSITAKFPFTVPDPPGQP 1149
+D+ GLE +YR VRA G S P+ + T D P P
Sbjct: 74 ISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV---------RTDEDVPSGP 123
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 190 VDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEGEEYE 244
V + W PP D G I+QY + + G + + ++ + L++ EY
Sbjct: 35 VRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93
Query: 245 FRVIAVNKGGPGEPSKASAPVTCK 268
V A GPG S+PV +
Sbjct: 94 VWVRAHTDVGPGPE---SSPVLVR 114
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 885 AEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRV 944
+ ++G + Y + + V+ +S + L + T Y V
Sbjct: 43 PADSRNGVIT------QYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWV 96
Query: 945 RAENLQG---LSEPI--TTKEPV 962
RA G S P+ T E V
Sbjct: 97 RAHTDVGPGPESSPVLVRTDEDV 119
Score = 37.0 bits (86), Expect = 0.015
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 74 PS-PPEGPLKPSNITKSSCNLEWRAPRDDGGT-DILHYVV--EKMDMETGRWVPMGDVSG 129
PS PP+ + ++ ++ + W P D I Y V E +D E + +S
Sbjct: 18 PSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 130 TYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRP 174
++ L + +Y V+A +G S P++ + T +D P
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR---TDEDVPSGP 123
Score = 32.0 bits (73), Expect = 0.98
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIE-KMDISRGTWSDAGMTV 542
PS PP+ + ++ + ++SW P D I Y + + +
Sbjct: 16 STPSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74
Query: 543 S---LFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAP 591
S +D+ L EY V+A +G + + R + D P P
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPG---PESSPVLVRTDEDVPSGP 123
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 67.4 bits (165), Expect = 3e-13
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE--KRERGGEWLRANNYPTTNL 1282
P +AP++ V S S +S+ W + Y + E +
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVLE--KI-VESYQIRYWAAHDKEEAANRVQVTSQEY 74
Query: 1283 NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEA 1331
+ + +L +Y V A N AG G PS + +K P +
Sbjct: 75 SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEA-----FTKKASGPSS 118
Score = 58.9 bits (143), Expect = 3e-10
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 586 DEPD-APEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQ-KKEKGNPYWMNALEVPAN 643
D P AP + VK + + W+ L + Y I+ N ++V +
Sbjct: 16 DAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQ 72
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+ ++ +L +Y V A N AG PSD
Sbjct: 73 EYSARLENLLPDTQYFIEVGACNSAGCGPPSD 104
Score = 58.1 bits (141), Expect = 6e-10
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 12/118 (10%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPD-PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQK 1364
G S ++ + P P V ++ +++ W ++ Y ++
Sbjct: 1 GSSGSSGVA-VINSAQDA--PSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRY 54
Query: 1365 RKKGGDWVDANSVPVPNPV--HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
AN V V + + NL +Y V A N AG G S +
Sbjct: 55 WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAG---CGPPSDMIEAF 109
Score = 43.9 bits (104), Expect = 5e-05
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 177 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI--VPANITATSV 234
P + V + + W + + Y I + E A V + + +
Sbjct: 22 PTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQEYSARL 78
Query: 235 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
+L +Y V A N G G P S +
Sbjct: 79 ENLLPDTQYFIEVGACNSAGCGPP---SDMIEAF 109
Score = 43.1 bits (102), Expect = 9e-05
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE--KKDYNSTVWTKVSSYVTTPFVR 1580
P + + ++++W + +Y + +V R
Sbjct: 21 APTEVGVKVLSSSEISVHWEHVL-EK--IVESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Query: 1581 VRNLAIGSTYEFRVMAENQYG 1601
+ NL + Y V A N G
Sbjct: 78 LENLLPDTQYFIEVGACNSAG 98
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE--KYESATGFWSKLSSFV 1096
D PS P + V ++ S+ W+ L+ + +Y + +++
Sbjct: 16 DAPSEAPTE-VGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 1097 RSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ + + L + QY V A N G P + I A G
Sbjct: 72 QEYSARLENLLPDTQYFIEVGACNSAGCGPPSD---MIEAFTKKASGPSSG 119
Score = 35.4 bits (82), Expect = 0.045
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLL 875
P V ++ +++ W ++ Y ++ AN V V + ++
Sbjct: 21 APTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Score = 34.3 bits (79), Expect = 0.11
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYII---EKMDISRGTWSDAGMT 541
D PS P + V ++ + W V + + Y I D +
Sbjct: 16 DAPSEAPTE-VGVKVLSSSEISVHWE-HVLEK--IVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 542 VSLFYDVPRLIHRKEYLFRVKAVNSIGE---SDTLETT 576
+ L+ +Y V A NS G SD +E
Sbjct: 72 QEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF 109
Score = 32.3 bits (74), Expect = 0.47
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 13/102 (12%)
Query: 75 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSGTYTR 133
P + ++ S ++ W + + Y + + V+
Sbjct: 20 EAPTE-VGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQEYS 75
Query: 134 A--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 170
A ENL+ Y V A N G S + T K
Sbjct: 76 ARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF---TKKAS 114
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 67.7 bits (165), Expect = 3e-13
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNN---------QELKQSV 2138
+ F+ KPQ G+ + F +V A + PT+ WF + L+
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 2139 KFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
F + + I + K G Y + L V
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 53.1 bits (127), Expect = 4e-08
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 1434 RDITVKAGEDFSIHVPFMAFP---QPAAFWFANDSIIDDSDTRVHKQLTMN--------S 1482
+ TVK GED + A +P WF + S H QL +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAG 1534
+ + ++ + G YR ++ FD+ + + V + N+ + +G
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG 126
Score = 51.9 bits (124), Expect = 9e-08
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 2204 DVIWLHNN---------KEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE 2254
+ W K ++ F S + ++I + +G Y CE +
Sbjct: 41 TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 100
Query: 2255 SFSSCTLLVQVS 2266
S L V S
Sbjct: 101 DSCSFDLEVHES 112
Score = 46.9 bits (111), Expect = 5e-06
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQ---ELKQSVKFMKRY 2061
+ F+ KPQ G+ + F +V A + PT+ WF K +
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 2062 AGDDYTFYSSLRKLQIDRFSIQDT 2085
+ ++ + +QI +
Sbjct: 65 TFERHSRVYTFE-MQIIKAKDNFA 87
Score = 46.5 bits (110), Expect = 8e-06
Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 11/110 (10%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEP---PPEVTWTIDGKELKTDSVRTTVTSIGYH 329
+ +K G+ + + E P + W +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 330 TIVNTV--------NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKT 371
+ V K + +G Y E+ D SF + V E+ T
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 40.4 bits (94), Expect = 0.001
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 11/101 (10%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEP---PPEVTWTIDGKELKTDSVRTTVTSIGYH 744
+ +K G+ + + E P + W +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 745 TIVNTV--------NTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ V K + +G Y E+ D SF +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
Score = 33.8 bits (77), Expect = 0.21
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 2264 QVSWYKDGNPVSDDPA--------TYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGG 2311
+ W+K A T++ T++M+I+ + G Y + +
Sbjct: 41 TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 100
Query: 2312 IIAAFSLNV 2320
+F L V
Sbjct: 101 DSCSFDLEV 109
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 67.2 bits (164), Expect = 4e-13
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 1233 EVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG-----EWLRANNYPTTNLNFTVH 1287
+P++V + W I GY V R+ G W + T + +
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 1288 DLREGGKYEFRVIAINEAGPGKPSKP 1313
+L++G YE +V G S+
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES 106
Score = 46.8 bits (111), Expect = 4e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 1333 KVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDAN--SVPVPNPV---HTVG 1387
+T +V ++W + I+GY V R+ G ++ ++ P +
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 1388 NLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
NL +G Y +V G S V
Sbjct: 81 NLKKGVTYEIKVRPYFNEF---QGMDSESKTV 109
Score = 46.0 bits (109), Expect = 8e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 190 VDLEWTPPKKDGGSPISQYII-----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 244
V + WT ++ I Y + W+ + + +LK+G YE
Sbjct: 32 VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 245 FRVIAVNKGGPGEPSKASAPVTCK 268
+V G S T +
Sbjct: 90 IKVRPYFNEFQGMD---SESKTVR 110
Score = 44.5 bits (105), Expect = 3e-05
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 604 VDLAWKPPLNDGGSPITDYIIQKKEKGNP----YWMNALEVPANKTDVKIPDLTKGQEYE 659
V + W I Y + ++ W N + + +L KG YE
Sbjct: 32 VQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 660 FRVIAVNEAGPSEPSDA 676
+V S++
Sbjct: 90 IKVRPYFNEFQGMDSES 106
Score = 37.2 bits (86), Expect = 0.011
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 901 GYVI---EKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL---SE 954
GY + + L W ++ P + A + L +G TYE +VR + SE
Sbjct: 47 GYRVMYRQTSGLQATSSWQ-NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE 105
Query: 955 PITTK 959
T +
Sbjct: 106 SKTVR 110
Score = 34.5 bits (79), Expect = 0.091
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 11/86 (12%)
Query: 1049 LDVSDITPESCSLSWKPPLDDGGSPITNYVVE----KYESATGFWSKLSSFVRSPA---Y 1101
+ +TP + ++W I Y V AT W L + P
Sbjct: 22 HNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLD--AKVPTERSA 77
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEP 1127
+ L+ Y +VR
Sbjct: 78 VLVNLKKGVTYEIKVRPYFNEFQGMD 103
Score = 34.5 bits (79), Expect = 0.093
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 1536 SLTLYWTPPRDNGGSEITNYVVE----KKDYNSTVWTKVSSYVTTPF-VRVRNLAIGSTY 1590
++ + WT R I Y V ++ W + + V T + NL G TY
Sbjct: 31 TVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTY 88
Query: 1591 EFRVMAENQYGLSKP 1605
E +V
Sbjct: 89 EIKVRPYFNEFQGMD 103
Score = 33.3 bits (76), Expect = 0.21
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKER 1934
++W+ + + + + ++ +L +G YE +V+ S + R
Sbjct: 60 ATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVR 110
Score = 32.5 bits (74), Expect = 0.46
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 81 LKPSNITKSSCNLEWRAPRDDGGTD--ILHYVVEKMDMETGRWVPMGDVSGTYTRA--EN 136
P +T ++ + W R + Y T W + T A N
Sbjct: 22 HNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 137 LIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFG 172
L +G Y +V+ + S ++ + G
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin,
immune system, extracellular; HET: NAG; 3.10A {Homo
sapiens} PDB: 3o4o_B*
Length = 349
Score = 71.8 bits (175), Expect = 5e-13
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 44/199 (22%)
Query: 2107 EGQSVKFTCRVIAI-----------ATPTLTWFHNNQELKQSVKFMKRYAG-----DDYT 2150
E + + C + A TL W+ Q+ R +
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKY---------------------DL 2189
T + D G Y N + L V +K +
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 2190 PVIHYKNHRRAN-KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
+ + ++ K + W +I+ N+ L ++G YTC
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALISNNGNYTCVV 196
Query: 2249 -FNDEGESFS-SCTLLVQV 2265
+ + G +F + TL V+V
Sbjct: 197 TYPENGRTFHLTRTLTVKV 215
Score = 66.4 bits (161), Expect = 3e-11
Identities = 41/320 (12%), Positives = 77/320 (24%), Gaps = 83/320 (25%)
Query: 2024 EGQSVKFTCRVIAI-----------ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSL 2072
E + + C + A TL W+ Q+ R + +
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD- 79
Query: 2073 RKLQIDRFSIQD---------------------TSFDRRQAAPRFVIKPQSAFCYEGQSV 2111
L + D + + P E
Sbjct: 80 -VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138
Query: 2112 KFTCRVI-----AIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+ TC + + PT+TW+ +++ + + + G Y
Sbjct: 139 RITCPNVDGYFPSSVKPTITWYMGCYKIQNF----NNVIPEGMNLSFLIALISNNGNYTC 194
Query: 2167 RAENHYGYREE----VVFLNVQRKYDL---PVIHYKNHRRANKYD--------------- 2204
R + + V PVIH N + +
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 2205 -------VIWLHNNKEIKPSNDFAYSSVAHVH----------TLKIAEIFPEDSGV-YTC 2246
V W + K+ + + H L I ++ ED Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 2247 EAFNDEGESFSSCTLLVQVS 2266
A + +GE + + +V
Sbjct: 315 HARSAKGEVAKAAKVKQKVP 334
Score = 52.6 bits (125), Expect = 1e-06
Identities = 21/177 (11%), Positives = 38/177 (21%), Gaps = 53/177 (29%)
Query: 2177 EVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSS-----VAHVHTL 2231
E + +Y A +IW ++ + L
Sbjct: 23 EPARIKCPLFEHFLKFNYSTAHSA-GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81
Query: 2232 KIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV---------------------------- 2263
D+G YTC N S + L V
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141
Query: 2264 --------------QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
++WY + + I + + L + + G Y+
Sbjct: 142 CPNVDGYFPSSVKPTITWYMGCYKIQNFN-----NVIPEGMNLSFLIALISNNGNYT 193
Score = 47.9 bits (113), Expect = 2e-05
Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 40/229 (17%)
Query: 1995 DRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVI-----AIATPTLTWFHNNQ 2049
+ + + + P E + TC + + PT+TW+
Sbjct: 105 SKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164
Query: 2050 ELKQSVKFMKRY------------AGDDYT---FYSSLRKLQIDRFSIQ-DTSFDRRQAA 2093
+++ + G+ YT Y + ++ + A
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALISNNGN-YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAV 223
Query: 2094 PRFVIKPQSAFCYE---GQSVKFTCRVIAIA----TPTLTWFHNNQELKQSVKFMKRYAG 2146
P + P YE G+ + C V + W + ++ +
Sbjct: 224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES 283
Query: 2147 DDYTF----------VINRTKMEDRG-EYIIRAENHYGYREEVVFLNVQ 2184
++ I + ED Y+ A + G + + +
Sbjct: 284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 46.4 bits (109), Expect = 7e-05
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSG 354
+ W ++ + + V T +D+G Y LRNT+
Sbjct: 44 HSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 355 RDEGSFTVTVLETISKTNTTTISSKNMMYL 384
+ +F + V++ S N+ + +Y+
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
Score = 45.6 bits (107), Expect = 1e-04
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 1400 IAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFM-----AFP 1454
+ N S K + P+ V ++ + + I P + +
Sbjct: 97 MLRNTTYCS---KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV 153
Query: 1455 QPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQY----RLQLKNPAGFDT 1510
+P W+ I + + + + +L + S+ G Y T
Sbjct: 154 KPTITWYMGCYKIQNFNNVIPE-----GMNLSFLIALISNNGNYTCVVTYPENGRTFHLT 208
Query: 1511 ATLHVRVLDRPH 1522
TL V+V+ P
Sbjct: 209 RTLTVKVVGSPK 220
Score = 41.8 bits (97), Expect = 0.002
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 1430 LSGVRDITVKAGEDFSIHVPFMAFPQPAAF-----------WF----ANDSIIDDSDTRV 1474
L +R I V E I P + W+ D +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
+++ L + + +D G Y L+N + V+ +
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCF 120
Score = 40.6 bits (94), Expect = 0.005
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 19/137 (13%)
Query: 247 VIAVNKGGPGEPSKASAPVTCKPR---FVAPKIKTPLKDIIIKAGKILNVEIQ------F 297
V+ + G + V V P I +P ++ + + I F
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 298 IGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV---------NTKRSD-SGTYHL 347
+ + EV WTIDGK+ ++ T+ H+ D +Y
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 348 ELRNTSGRDEGSFTVTV 364
R+ G + V
Sbjct: 315 HARSAKGEVAKAAKVKQ 331
Score = 39.5 bits (91), Expect = 0.012
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 1399 VIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVR----DITVKAGEDFSIH----VPF 1450
V+ E G + ++ V V P V + + GE+ I F
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 1451 MAFPQPAAFWFANDSIIDDSDTRVHKQLTMN---------SASLVVKNSQRSD-GGQYRL 1500
+ + +W + DD V +++ + L +K D Y
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 1501 QLKNPAGFDTATLHVRV 1517
++ G V+
Sbjct: 315 HARSAKGEVAKAAKVKQ 331
Score = 39.1 bits (90), Expect = 0.016
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 13/133 (9%)
Query: 265 VTCKPRFVAPKIKTPLKDIIIKAGKI----LNVEIQFIGEPPPEVTWTIDGKELKTDSVR 320
V K +K P+ + I+ G NV+ F P +TW + +++
Sbjct: 113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF--N 170
Query: 321 TTVTSIGYHTIVNTVNTKRSDSGTY----HLELRNTSGRDEGSFTVTVLETISKTNTTTI 376
+ + + S++G Y + + TV V+ + I
Sbjct: 171 NVIPEGMNLSF---LIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVI 227
Query: 377 SSKNMMYLFEREL 389
S N ++E+E
Sbjct: 228 HSPNDHVVYEKEP 240
Score = 38.3 bits (88), Expect = 0.023
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----NTKRSDSGTYHLELRNTSG 769
+ W ++ + + V T +D+G Y LRNT+
Sbjct: 44 HSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 770 RDEGSFTI 777
+ +F +
Sbjct: 104 CSKVAFPL 111
Score = 37.2 bits (85), Expect = 0.065
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQ------FIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 742
P I +P ++ + + I F+ + EV WTIDGK+ ++ T+
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284
Query: 743 YHTIVNTV---------NTKRSD-SGTYHLELRNTSGRDEGSFTI 777
H+ D +Y R+ G + +
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Score = 33.7 bits (76), Expect = 0.78
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 707 NVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRN 766
NV+ F P +TW + +++ + + + S++G Y +
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSF---LIALISNNGNYTCVVTY 198
Query: 767 TSGRDEGSFT 776
T
Sbjct: 199 PENGRTFHLT 208
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 5e-13
Identities = 86/598 (14%), Positives = 167/598 (27%), Gaps = 188/598 (31%)
Query: 1295 YEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGG 1354
Y+F + I +PS T + + + D K +V R +
Sbjct: 91 YKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNV---SRLQPYL-- 138
Query: 1355 ARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQS 1414
+++ +++ R V + V G+ GK
Sbjct: 139 -KLRQALLELRP--AKNV---------LIDGVL------------------GS---GKT- 164
Query: 1415 GPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFW--FANDSIIDDSDT 1472
+ L V+ DF I FW N +S
Sbjct: 165 ------------WVALDVCLSYKVQCKMDFKI------------FWLNLKNC----NSPE 196
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVL--DRPHPPENL--- 1527
V + L + + RSD + +R L +P+ L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYE-NCLLVL 250
Query: 1528 -------HADEFAGDSLTLYWTPPRDNGGSEITNYVVEKK------DYNSTVWTK----- 1569
+ F L T R ++T+++ D++S T
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTT--RF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 1570 -VSSYVTTPF-------VRVRNLAIG----STYEFRVMAEN--QYGLSKPALTI------ 1609
+ Y+ + + S + +N K I
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 1610 -DPIKAKHPFD---VPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDD 1665
+P + + FD V P +SL+W + + + L+ +
Sbjct: 366 LEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--E 418
Query: 1666 KWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH 1725
K K S IP L+ + + Y + HR +I IP +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYAL------------HR-------SIVDHYNIPKTF 459
Query: 1726 NLEKELIRKEID--IMNQL-HHPKLINLHDAFEDDDEMVLIFEFL-------------SG 1769
+ + LI +D + + HH K I + + L F FL SG
Sbjct: 460 DSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 1770 G--------ELFER-IT--APDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPEN 1816
+ ++ I P Y+ +++++ ++ E + +++ + + E+
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 69.9 bits (170), Expect = 1e-11
Identities = 61/435 (14%), Positives = 124/435 (28%), Gaps = 125/435 (28%)
Query: 1193 GYQQCHADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANH 1252
Q+ +V + + + + S I+ PS Y +N
Sbjct: 78 MVQKFVEEVLRINYKFLM--SPIKTE-------QRQPSMMTRM-YI-EQRDRLYN----- 121
Query: 1253 GGRPITGYYVEKRERGGEWLRANNY---PTTNLNFTVH----------------DLREGG 1293
+ Y V R + LR P N+ + +
Sbjct: 122 DNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1294 KYEFRVIAINEAGPGKPSKPTDIVQ-----C----KEQKRKPDPPEAPKV---DRITKDS 1341
K +F++ +N + P +++ + D K+ +
Sbjct: 179 KMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1342 VTLSWRPPKH-----------------DGGARIKGYIVQKRKKG-GDWVDANSVPVPNPV 1383
L +P ++ + +I ++ R K D++ A + +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLD 292
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEP--GKQSGP----VIVEEQPNKP----------V 1427
H L+ E + + ++ P + P +I E +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1428 MDLSGVRDITVKAGE---------DFSIHVPFMAFPQ----PAA----FWFANDSIIDDS 1470
L+ + + ++ E S+ FP P W D I D
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV------FPPSAHIPTILLSLIW--FDVIKSDV 404
Query: 1471 DTRVHKQLTMNSASLVVKNSQRS----DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
V+K ++ SLV K + S L++K + LH ++D + P+
Sbjct: 405 MVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHRSIVDHYNIPKT 458
Query: 1527 LHADEFAGDSLTLYW 1541
+D+ L Y+
Sbjct: 459 FDSDDLIPPYLDQYF 473
Score = 68.0 bits (165), Expect = 3e-11
Identities = 95/771 (12%), Positives = 186/771 (24%), Gaps = 281/771 (36%)
Query: 1595 MAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDG------ 1648
E+QY + FD PK + S E+ ++ SK G
Sbjct: 11 TGEHQYQYKDILSVFED-AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 1649 -----GSPIQRYIVEKRLISDDKWIKASMAHIP-DTSLKYT------------SSVYDHY 1690
+ + VE+ L + K++ + + S+ + V+ Y
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 1691 DI------------LEEI---------GTGAFG----VVHRCRERKT-----GNIFAAKF 1720
++ L E+ G G + C K IF +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---W 186
Query: 1721 IPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPD 1780
+ + + E + ++++ +L + N + + L + EL + +
Sbjct: 187 LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 1781 YKMSEAEVINYMRQVCEAVKHMHEKNII-HLDVKPENIMCQ----TRNSTNVKMIDFGLA 1835
Y+ ++ + V ++ C+ TR +
Sbjct: 243 YE--NCLLV--LLNVQ-------NAKAWNAFNLS-----CKILLTTRFK--------QVT 278
Query: 1836 TKLDPNEVVKISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVLDVAEDTNWRVANDYL 1895
L IS ++ + D +L LD
Sbjct: 279 DFLSAATTTHIS-----------LDHHSMTLTPDE-VKSLLLKYLDCRPQ---------- 316
Query: 1896 VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPKFPLHSWLTG----DHRNRT 1951
P +L + P + D
Sbjct: 317 -DLP----REVLTTN---------------------------PRRLSIIAESIRDGLATW 344
Query: 1952 NSINQKNLIKMRDRIRSKYEGWDECVLPLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAP 2011
++ N K+ I SSL L+ + R+
Sbjct: 345 DNWKHVNCDKLTTIIE-------------------SSLNVLEPA---------EYRKMFD 376
Query: 2012 RFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSV--KFMKRYAGDDYTFY 2069
R + P S ++++ WF + V K K
Sbjct: 377 RLSVFP--------PSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHKY--------- 414
Query: 2070 SSLRKLQID--RFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTW 2127
SL + Q SI + + L
Sbjct: 415 -SLVEKQPKESTISIPSIYLELKVKLEN--------------------------EYAL-- 445
Query: 2128 FHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKY 2187
H + + K + DD D +Y +H G+
Sbjct: 446 -H--RSIVDHYNIPKTFDSDDLI-----PPYLD--QYFY---SHIGH------------- 479
Query: 2188 DLPVIHYKNHRRANKYDVI--------WLHNNKEIKPSNDFAYSSVAH-VHTLK-----I 2233
H KN + + +L + A S+ + + LK I
Sbjct: 480 -----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 2234 AEIFPEDSG-VYTCEAFNDEGES---FSSCTLLVQVSWYKDGNPVSDDPAT 2280
+ P+ V F + E S T L++++ + + ++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 59.9 bits (144), Expect = 1e-08
Identities = 89/668 (13%), Positives = 188/668 (28%), Gaps = 215/668 (32%)
Query: 1517 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVE--KKDYNSTVWTKVS--- 1571
++ L L+WT + +V E + +Y + + +
Sbjct: 54 IIMSKDAVSGT---------LRLFWTL-LSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQ 102
Query: 1572 ---SYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKA-----KHPF-DVPG 1622
S +T ++ R+ F +Y +S+ + +A + G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 1623 APGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDK--WIKASMAHIPDTSL 1680
G+ K + Y V+ ++ D K W+ + P+T L
Sbjct: 158 VLGSGKTW--------VA--------LDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVL 199
Query: 1681 KYTSSVYDHYDI-LEEIGTGAFGVVHRCRERKTG--NIFAAKFIP--------VSH---- 1725
+ + D + + R + + +K V +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 1726 ---NLE-KELI----RKEIDIMNQLH--HPKLINLHDAFEDDDEMVLIFEFL--SGGELF 1773
NL K L+ ++ D ++ H L + D+ L+ ++L +L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL- 318
Query: 1774 ERITAPDYKMSEAEVIN--YMRQVCEAVKHMHE--KNIIHLDVKPENIMCQTRNSTNVKM 1829
P E N + + E+++ N H++ +
Sbjct: 319 -----P----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-----------TI 358
Query: 1830 IDFGLATKLDPNEV-------------VKISTGTAEFAAPEIVEREPVGFYTDMWAVGVL 1876
I+ L L+P E I T ++++ +
Sbjct: 359 IESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV------------- 404
Query: 1877 AYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTSKERPK 1936
++ V + + + K+ T + S+ E +VK +N +
Sbjct: 405 --MVVVNKLHKYSLVEKQ-PKESTISIPSIYL----ELKVKLEN---------------E 442
Query: 1937 FPLHSWLTGDHRNRTNSINQKNLIKMRDRIRSKYEGWDECVLPLGRLSQYSS------LR 1990
+ LH ++++ I ++ D L L QY L+
Sbjct: 443 YALH----------------RSIVD-HYNIPKTFDSDD---LIPPYLDQYFYSHIGHHLK 482
Query: 1991 KL-QIDRFSIQDTSF-DRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNN 2048
+ +R ++ F D RF+ + ++ + TL
Sbjct: 483 NIEHPERMTLFRMVFLDF-----RFL---EQKIRHDSTA----WNASGSILNTL------ 524
Query: 2049 QELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKP-----QSA 2103
Q +KF K Y D+ Y L +D F + + + A
Sbjct: 525 ----QQLKFYKPYICDNDPKYERLVNAILD-FL--------PKIEENLICSKYTDLLRIA 571
Query: 2104 FCYEGQSV 2111
E +++
Sbjct: 572 LMAEDEAI 579
Score = 56.0 bits (134), Expect = 2e-07
Identities = 110/690 (15%), Positives = 199/690 (28%), Gaps = 213/690 (30%)
Query: 703 GKILNVEIQ-FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH 761
IL+V F+ D K+++ D ++ ++ I+ + + SGT
Sbjct: 19 KDILSVFEDAFVDN--------FDCKDVQ-DMPKSILSKEEIDHIIMSKDA---VSGTLR 66
Query: 762 LELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLHCRGNHLPIMEAVKSRKPDPPEAPK 821
L F + + + +K + VL R N+ +M +K+ + P +
Sbjct: 67 L------------FWTLLSKQEEM--VQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTR 110
Query: 822 -----VDRITKDSVTLS----WRPPKHDG------GARIKGYIVQKRKKG-GDWVDANSV 865
DR+ D+ + R + R ++ G G A V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 866 PVPNPVHTLLSIG--YLSQFLAEEKKHGKLLLAKVEN-GYVIEKRDLTHGGGWVPAVNHV 922
+ V + +L+ L + +L ++ Y I+ N
Sbjct: 171 CLSYKVQCKMDFKIFWLN--LKNCNSP-ETVLEMLQKLLYQIDP-------------NWT 214
Query: 923 SPYDHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQYGKEL----DKWTNY 978
S DH + + + E R L + Y L + N
Sbjct: 215 SRSDHSSNIKLRIHSIQAELR----RL-------------LKSKPYENCLLVLLNVQ-NA 256
Query: 979 DVLKEI---CQIHL----PQIVDGKPVIAKSPFDPPDAPSQPEVTGYSPS-SVSLAWNPP 1030
C+I L Q+ D + A + +P SL
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHI---SLDHHSMTLTPDEVKSLL---- 307
Query: 1031 ANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWS 1090
+ D P + V P S+ + + DG + N+ +
Sbjct: 308 LKYLDCRPQD--LPRE----VLTTNPRRLSIIAE-SIRDGLATWDNW--KHVNC-----D 353
Query: 1091 KLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQ 1150
KL++ + S + +V R+ F S+ FP + P
Sbjct: 354 KLTTIIES-SLNVLEPAEYRKM-FD---------------RLSV---FPPSAHIPTILLS 393
Query: 1151 IVDWDTNNATLMWDRPRTDGG---SKIQGY----KVEFRSTRTATDCGLGYQQCHADVGQ 1203
++ W +D ++D +K+ Y K ST + L + +
Sbjct: 394 LI-W--------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEY 443
Query: 1204 TPHGWWLQDSRI--QGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYY 1261
H I I FD D P + Y +H G++
Sbjct: 444 ALH------RSIVDHYNIPKTFDSDD-LIPPYLDQYF-----------YSH-----IGHH 480
Query: 1262 VEKRERGGE------------WLR--------ANNYPTTNLNFTVHDLR--------EGG 1293
++ E +L A N + LN T+ L+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDP 539
Query: 1294 KYEFRVIAINE--AGPGKP---SKPTDIVQ 1318
KYE V AI + + SK TD+++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 48.7 bits (115), Expect = 2e-05
Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 66/286 (23%)
Query: 2065 DYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSA--FCYEGQSVKFTCRVIAIAT 2122
Y Y + + D F + + Q P+ ++ + +V T R+
Sbjct: 15 QYQ-YKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-- 70
Query: 2123 PTLTWFHNNQELKQSVK-FMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFL 2181
+ QE + V+ F++ +Y F+++ K E R ++ Y + + ++
Sbjct: 71 -----LLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYN 121
Query: 2182 NVQ--RKYDLPVIHYKNHRRANKYDVI--WLHNNKEIKPSND--------FAYSSVAH-- 2227
+ Q KY++ R Y + L E++P+ + + VA
Sbjct: 122 DNQVFAKYNVS--------RLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 2228 VHTLKIAEIFPEDSGVY-----TCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQ 2282
+ K+ ++ C + E LL Q+ + SD + +
Sbjct: 171 CLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQ--KLLYQID--PNWTSRSDHSSNIK 224
Query: 2283 F-TQIGQTYKMKILSTT--------LDDVGQYSAQMGGIIAAFSLN 2319
Q ++L + L +V +A+ AF+L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAK---AWNAFNLS 265
Score = 44.8 bits (105), Expect = 4e-04
Identities = 73/586 (12%), Positives = 161/586 (27%), Gaps = 198/586 (33%)
Query: 288 GKILNVEIQ-FIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH 346
IL+V F+ D K+++ D ++ ++ I+ + + SGT
Sbjct: 19 KDILSVFEDAFVDN--------FDCKDVQ-DMPKSILSKEEIDHIIMSKDA---VSGTLR 66
Query: 347 L----ELRNTSGRDEGSFTVTVLET-----ISKTNTTTI--SSKNMMYLFERELLN---- 391
L + + F VL +S T S MY+ +R+ L
Sbjct: 67 LFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 392 LIVPDH---LKNLWNMKKSL-----HP--VLH----CRGNHLPIMEAVKSRYIIEMAEYG 437
+ + L+ ++++L ++ G ++ S + ++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFK 183
Query: 438 LDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKPSPPEGPLEV 497
+ W + C ++ L + + +P D S L +
Sbjct: 184 I-FWLNL-KNCNSPETVLEML------------QKLLYQIDPNWTSRSDHSSNI--KLRI 227
Query: 498 SNVTKESCKL--SWRVP-----VDDGGAPILH-YIIEKMDI-------SRGTWSDAGMTV 542
++ E +L S + + + + ++ +R +T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTR----FKQVTD 279
Query: 543 SL---FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDW 599
L L H L T + K+ + + +
Sbjct: 280 FLSAATTTHISLDHHSMTL-------------TPDEVKSLLLK----------------Y 310
Query: 600 -GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNP----YW---------------MNALE 639
DL P +P II + + W +N LE
Sbjct: 311 LDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 640 VPANKT----------DVKIPDLTKGQEYEFRVIAV--NEAGPSEPSDASDIIM--CKQR 685
+ IP ++++ + S+ ++ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPT---------ILLSLIWFDVIKSDVMV----VVNKLHKY 414
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH- 744
L K P E T +I L+ ++ H
Sbjct: 415 SLV------EKQ-------------------PKESTISIPSIYLELKVKLENEYAL--HR 447
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKK 790
+IV+ N ++ + + D+ ++ + HLKN+ + ++
Sbjct: 448 SIVDHYNIPKT----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Score = 41.4 bits (96), Expect = 0.005
Identities = 94/681 (13%), Positives = 192/681 (28%), Gaps = 230/681 (33%)
Query: 108 HYVVEKMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 166
H+ MD ETG D+ + + ++ D + + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFE--DAFVDNFD-------CKDVQDMPKSILSKE-E 50
Query: 167 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK--KPKYG----PWE 220
D L WT K + Q +E+ + Y P +
Sbjct: 51 IDHIIMSKDAVSGTLR---------LFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 221 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKT-- 278
P+ +T Y ++ A V+ + + K++
Sbjct: 100 TEQRQPSMMT----------RMYIE---QRDRLYNDNQVFAKYNVS-RLQPYL-KLRQAL 144
Query: 279 ----PLKDIIIK----AGK-ILNVEI----QFIGEPPPEVTWTIDGKELKTDSVRTTVTS 325
P K+++I +GK + +++ + + ++ W ++V +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 326 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE--------------------------GS 359
+ + I N + +++LR S + E +
Sbjct: 205 L-LYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 360 FTV---TVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNL---W-NMKKSLHPVL 412
F + +L T K T +S+ ++ + PD +K+L + + + P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 413 HCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTEN 472
N P ++ + I + DNWK +V +
Sbjct: 322 VLTTN--PRRLSIIAESIRDGLAT-WDNWK---------------------HVNCDKLTT 357
Query: 473 MYGAS-EPLDP-----------LFPDKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPI 520
+ +S L+P +FP P L + + W + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---------I-WFDVIKSDVMVV 407
Query: 521 LHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYL-FRVKAVNSIGESDTLETTKTT 579
++ + + + + T+S+ + YL +VK N +
Sbjct: 408 VNKLHKYSLVEK--QPK-ESTISI-PSI--------YLELKVKLEN-----------EYA 444
Query: 580 VARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYW----- 634
+ R+ D + P+ D +D + PP D Y Y
Sbjct: 445 LHRSIVDHYNIPKT---FDS-DDLI-----PPYLDQ------YF---------YSHIGHH 480
Query: 635 MNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIK-- 692
+ +E + FR++ ++ RFL KI+
Sbjct: 481 LKNIE-HPERMT------------LFRMVFLD-----------------FRFLEQKIRHD 510
Query: 693 -TPLKDIIIKAGKILNVEIQF 712
T +G ILN Q
Sbjct: 511 STAWN----ASGSILNTLQQL 527
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 66.4 bits (162), Expect = 6e-13
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 2091 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS----VKFMKRYAG 2146
PR V + V PTL W HN Q L++S V++ +
Sbjct: 6 YYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 2147 DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
+ + N+ + G Y + A+N G + + + ++
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 65.6 bits (160), Expect = 1e-12
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
+ P++ + + + I E G PPP + W +G+ L+ +
Sbjct: 6 YYPPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 331 IVNT---VNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++G Y L +N G + L+
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 64.1 bits (156), Expect = 4e-12
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 1441 GEDFSIHVPFMAFPQPAAFWFANDSIIDDSD---TRVHKQLTMNSASLVVKNSQRSDGGQ 1497
+ I P P W N + +S +++ ++ L+ + G
Sbjct: 20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN 79
Query: 1498 YRLQLKNPAGFDTATLHVRVLDRPHPPENL 1527
Y L KNP G T++ L P P + +
Sbjct: 80 YTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 57.9 bits (140), Expect = 6e-10
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
+ P++ + + + I E G PPP + W +G+ L+ +
Sbjct: 6 YYPPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 746 IVNT---VNTKRSDSGTYHLELRNTSGRDEGSFTI 777
++G Y L +N G +
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Score = 57.5 bits (139), Expect = 8e-10
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 2205 VIWLHNNKEIKPSNDF----AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCT 2260
+ WLHN + ++ S L + ++G YT A N G + +
Sbjct: 37 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96
Query: 2261 LLVQV 2265
Sbjct: 97 GHFLK 101
Score = 44.8 bits (106), Expect = 2e-05
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYT 2067
PR V + V PTL W HN Q L++S Y +
Sbjct: 6 YYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 2068 FYSSLRKLQIDRFSIQDT 2085
L ++ + +
Sbjct: 63 SEGC---LLFNKPTHYNN 77
Score = 32.5 bits (74), Expect = 0.49
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 2264 QVSWYKDGNPVSDDP---ATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ W +G P+ + Y + T + G Y+
Sbjct: 36 TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 65.8 bits (161), Expect = 7e-13
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL--KQSVKFMKRYAGDDY 2149
+ + + Y G+ V+ C V + + WF N +E+ ++ R G +
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 2150 TFVINRTKMEDRGEYIIRAEN 2170
+I D EY +
Sbjct: 65 ILIIEGATKADAAEYSVMTTG 85
Score = 64.3 bits (157), Expect = 2e-12
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVA--HVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+V W N +EI P Y H L I D+ Y+ + SS L
Sbjct: 37 NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ----SSAKL 92
Query: 2262 LVQV 2265
V +
Sbjct: 93 SVDL 96
Score = 49.6 bits (119), Expect = 3e-07
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 2252 EGESFS-SCTL---LVQVSWYKDGNPVSDDPAT-YQFTQIGQTYKMKILSTTLDDVGQYS 2306
GE C + V W+K+G + P + Y+ G+ + + I T D +YS
Sbjct: 21 CGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80
Query: 2307 AQMGGIIAAFSLNV 2320
G ++ L+V
Sbjct: 81 VMTTGGQSSAKLSV 94
Score = 49.6 bits (119), Expect = 3e-07
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+ + + Y G+ V+ C V + + WF N +E+ K R +
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEG--- 61
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L I+ + D
Sbjct: 62 --KKHILIIEGATKADA 76
Score = 45.8 bits (109), Expect = 6e-06
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 19/94 (20%)
Query: 273 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
+ L+D G+ L E+ E V W +G+E+ Y
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV---SEDDANVKWFKNGEEIIPGP------KSRYRI 57
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
R + + L + + D ++V
Sbjct: 58 --------RVEGKKHILIIEGATKADAAEYSVMT 83
Score = 45.4 bits (108), Expect = 9e-06
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 688 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKT-DSVRTTVTSIGYH 744
+ L+D G+ L E+ E V W +G+E+ R + G
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 745 TIVNTVNTKRSDSGTY 760
I+ ++D+ Y
Sbjct: 64 HILIIEGATKADAAEY 79
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 1426 PVMDLSGVRDITVKAGED--FSIHVPFMAFPQPAAFWFANDSIIDDSDT-RVHKQLTMNS 1482
+M + D T GE V + WF N I R ++
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
L+++ + ++D +Y + +A L V + P
Sbjct: 64 HILIIEGATKADAAEYSVMTTGGQS--SAKLSVDLKSGP 100
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 70.7 bits (174), Expect = 9e-13
Identities = 50/271 (18%), Positives = 100/271 (36%), Gaps = 76/271 (28%)
Query: 1651 PIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRER 1710
P+ + +++ D KW P +L + + +G G FG V +
Sbjct: 2 PLSLSVDAFKILEDPKWE------FPRKNLV----------LGKTLGEGEFGKVVKATAF 45
Query: 1711 KTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMV 1761
A + V S + ++L+ E +++ Q++HP +I L+ A D ++
Sbjct: 46 --HLKGRAGYTTVAVKMLKENASPSELRDLLS-EFNVLKQVNHPHVIKLYGACSQDGPLL 102
Query: 1762 LIFEFLSGGEL-----------------------FERITAPDYKMSEAEVINYMRQVCEA 1798
LI E+ G L + ++ ++I++ Q+ +
Sbjct: 103 LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQG 162
Query: 1799 VKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEI 1858
++++ E ++H D+ NI+ +K+ DFGL+ + + +
Sbjct: 163 MQYLAEMKLVHRDLAARNILVAEGR--KMKISDFGLSRDVYEEDSYVKRSQG-------- 212
Query: 1859 VEREPV----------GFYT---DMWAVGVL 1876
R PV YT D+W+ GVL
Sbjct: 213 --RIPVKWMAIESLFDHIYTTQSDVWSFGVL 241
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 65.4 bits (159), Expect = 1e-12
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNN---------QELKQSVKF 2140
FV++PQ G S+ F+ RV + P + WF Q L+ +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 2141 MKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + I + G Y + L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 56.2 bits (135), Expect = 2e-09
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 2201 NKYDVIWLHNN---------KEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND 2251
V W + ++ + + +S ++ L I + P +G Y CE
Sbjct: 35 KPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTK 94
Query: 2252 EGESFSSCTLLVQ 2264
+ S+ L V
Sbjct: 95 DKFDCSNFNLTVH 107
Score = 48.1 bits (114), Expect = 1e-06
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 1434 RDITVKAGEDFSIHVPFMAFP---QPAAFWFANDSIIDDSDTRVHKQLT--------MNS 1482
+D V G + P WF + S H QL +
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
L + ++Q + G YR ++ FD + ++ V +
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 45.4 bits (107), Expect = 1e-05
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 278 TPLKDIIIKAGKILNVEIQFIGEP---PPEVTW---------TIDGKELKTDSVRTTVTS 325
+D + G + + G PP V W + G+ L+ +
Sbjct: 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68
Query: 326 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + + + + +G+Y E+ D +F +TV E
Sbjct: 69 VYLFELH-ITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 43.4 bits (102), Expect = 5e-05
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
FV++PQ G S+ F+ RV + P + WF S D Y
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 2067 TFYSSLR--KLQIDRFSIQDT 2085
S + +L I T
Sbjct: 64 DRASKVYLFELHITDAQPAFT 84
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 693 TPLKDIIIKAGKILNVEIQFIGEP---PPEVTW---------TIDGKELKTDSVRTTVTS 740
+D + G + + G PP V W + G+ L+ +
Sbjct: 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68
Query: 741 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ + + + + +G+Y E+ D +F +
Sbjct: 69 VYLFELH-ITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 34.6 bits (79), Expect = 0.068
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 12/71 (16%)
Query: 2264 QVSWYKDGNPVSDDPA--------TYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGG 2311
V W+K +Y +++ I G Y S +
Sbjct: 38 VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF 97
Query: 2312 IIAAFSLNVVK 2322
+ F+L V +
Sbjct: 98 DCSNFNLTVHE 108
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C*
3qaz_C*
Length = 199
Score = 67.8 bits (165), Expect = 2e-12
Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 10/181 (5%)
Query: 1237 YSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPT---TNLNFTVHDLREGG 1293
++ ++ W + +T +Y K + + ++Y +
Sbjct: 10 FNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHL 69
Query: 1294 KYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDG 1353
F V + P + + +Q P PE + ++++ + L+W +
Sbjct: 70 YQTFVVQLQDPREPRRQATQMLKLQNLV---IPWAPENLTLHKLSESQLELNWNNRFLN- 125
Query: 1354 GARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQ 1413
++VQ R SV ++ ++ + YTFRV +
Sbjct: 126 --HCLEHLVQYRTDWDHSWTEQSVDY-RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHW 182
Query: 1414 S 1414
S
Sbjct: 183 S 183
Score = 55.9 bits (134), Expect = 2e-08
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 10/143 (6%)
Query: 536 SDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPT 595
+T + + ++ +++ + P APE T
Sbjct: 52 FSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQ-----ATQMLKLQNLVIPWAPENLT 106
Query: 596 VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKG 655
+ E ++L W + ++++Q + + W + + +P +
Sbjct: 107 LHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTE--QSVDYRHKFSLPSVDGQ 161
Query: 656 QEYEFRVIAVNEAGPSEPSDASD 678
+ Y FRV + S+
Sbjct: 162 KRYTFRVRSRFNPLCGSAQHWSE 184
Score = 54.0 bits (129), Expect = 7e-08
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 1487 VKNSQRSDGGQYRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTP 1543
++ + + +QL++P T L ++ L P PENL + + L L W
Sbjct: 62 LQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNN 121
Query: 1544 PRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+ ++V+ + WT+ S F + ++ Y FRV
Sbjct: 122 RF---LNHCLEHLVQYRTDWDHSWTEQSVDYRHKFS-LPSVDGQKRYTFRV 168
Score = 52.4 bits (125), Expect = 3e-07
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%)
Query: 85 NITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDY 143
N+ +C W++ + T++ LHY + D + + S T L + +
Sbjct: 11 NVEYMNC--TWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIH 68
Query: 144 NFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS 203
++ V P + + P P T+ + ++L W +
Sbjct: 69 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LN 125
Query: 204 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV---IAVNKGGPGEPSK 260
+++++ + + S+P + + Y FRV G S+
Sbjct: 126 HCLEHLVQYRTDWDHSWTE-QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
Query: 261 ASAPVT 266
S P+
Sbjct: 185 WSHPIH 190
Score = 48.6 bits (115), Expect = 5e-06
Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 464 YVFRIRTENMYGASEPLDPLFP----DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAP 519
F ++ ++ + P PE L + +++ +L+W +
Sbjct: 71 QTFVVQLQDPREPRRQATQMLKLQNLVIPWAPEN-LTLHKLSESQLELNWNNRFLN---H 126
Query: 520 ILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDT 572
L ++++ +W++ + + +P + +K Y FRV++ +
Sbjct: 127 CLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA 179
Score = 47.4 bits (112), Expect = 1e-05
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA 1100
P P+ L + ++ L+W + ++V+ W++ S
Sbjct: 98 IPWAPEN-LTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV-DYRHK 152
Query: 1101 YDVFGLETNRQYRFRVRA 1118
+ + ++ ++Y FRVR+
Sbjct: 153 FSLPSVDGQKRYTFRVRS 170
Score = 47.0 bits (111), Expect = 2e-05
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFT 1285
P AP + S S + L WN + + V+ R + F+
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQS-VDYRHKFS 154
Query: 1286 VHDLREGGKYEFRV 1299
+ + +Y FRV
Sbjct: 155 LPSVDGQKRYTFRV 168
Score = 35.5 bits (81), Expect = 0.12
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 859
P PE + ++++ + L+W + ++VQ R
Sbjct: 98 IPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHS 141
Score = 35.1 bits (80), Expect = 0.15
Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 13/137 (9%)
Query: 1057 ESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFG-----LETNRQ 1111
E + +W+ + P + Y+++ + S G E +
Sbjct: 13 EYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLY 70
Query: 1112 YRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGG 1171
F V+ ++ + +P P + + L W+
Sbjct: 71 QTFVVQLQDPREPRRQATQMLKLQ---NLVIPWAPENLTLHKLSESQLELNWNNRFL--- 124
Query: 1172 SKIQGYKVEFRSTRTAT 1188
+ + V++R+ +
Sbjct: 125 NHCLEHLVQYRTDWDHS 141
Score = 30.9 bits (69), Expect = 3.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 921 HVSPYDHHATVPRLLEGTTYEFRVRA 946
Y H ++P + Y FRVR+
Sbjct: 145 QSVDYRHKFSLPSVDGQKRYTFRVRS 170
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus musculus}
PDB: 3mj7_B* 2npl_X
Length = 214
Score = 67.8 bits (165), Expect = 2e-12
Identities = 24/200 (12%), Positives = 48/200 (24%), Gaps = 44/200 (22%)
Query: 2107 EGQSVKFTCRVIAIATPT----LTWFHNNQELKQSVKFMKRYAGD--------------- 2147
+G++ C+ + W + + + + + Y+GD
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 2148 ---------DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR 2198
D + + ++ D G Y + + G + L V K
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 2199 RAN--------------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVY 2244
W + + + + + E SG Y
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTY 191
Query: 2245 TCEAFNDEGESFSSCTLLVQ 2264
+C N G L V
Sbjct: 192 SCTVQNRVGSDQCMLRLDVV 211
Score = 60.5 bits (146), Expect = 5e-10
Identities = 19/200 (9%), Positives = 43/200 (21%), Gaps = 41/200 (20%)
Query: 2024 EGQSVKFTCRVIAIATPT----LTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRK----- 2074
+G++ C+ + W + + + + + Y+GD
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 2075 ------------LQIDRFSIQDT-----------SFDRR------QAAPRFVIKPQSAFC 2105
+ + + D + P
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 2106 YEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEY 2164
G K C W + ++ + E G Y
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE--MTSPVISVKNASSEYSGTY 191
Query: 2165 IIRAENHYGYREEVVFLNVQ 2184
+N G + ++ L+V
Sbjct: 192 SCTVQNRVGSDQCMLRLDVV 211
Score = 50.5 bits (120), Expect = 1e-06
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 41/130 (31%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV-------------------------- 2263
++ + + D G Y C+ G + L V
Sbjct: 85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCE 144
Query: 2264 --------QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYSAQM----GG 2311
Q W K + + P + + + + + + G YS + G
Sbjct: 145 PKEGSLPLQFEWQKLSDSQT-MPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVGS 201
Query: 2312 IIAAFSLNVV 2321
L+VV
Sbjct: 202 DQCMLRLDVV 211
Score = 49.3 bits (117), Expect = 4e-06
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 1464 DSIIDDSDTRVH---KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDR 1520
D+ D RVH + AS+ V N Q SD G Y+ ++K G + VL +
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 1521 PHPPE-NLHADEFAGDSLTL-----YWTPP-----RDNGGSEITNYVVEKKDYNSTV 1566
P + E G+ L + P + S+ + + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Score = 48.9 bits (116), Expect = 5e-06
Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 27/219 (12%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK---KDGGSPISQYII 210
GE+ L C+ F P +W D + G Y
Sbjct: 15 GETAYLPCK--------FTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 211 EKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 270
+ K + V + + +V +L+ + ++ G K V
Sbjct: 67 DLKGRVHFTSND--VKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN-KKFLLTVL---- 119
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWTIDGKELKTDSVRTTVTSIG 327
V P D + G + +++ G P + W + +
Sbjct: 120 -VKPSGTRCFVDGSEEIGN--DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176
Query: 328 YHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
++ N SGTY ++N G D+ + V+
Sbjct: 177 VISV---KNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 44.3 bits (104), Expect = 1e-04
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 1396 TFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFP 1454
T++ G + + + V +P+ + D + + G DF + P
Sbjct: 98 TYQCKVKKAPGVAN---KKFLLTVLVKPSGTRCFV----DGSEEIGNDFKLKCEPKEGSL 150
Query: 1455 QPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLH 1514
W + M S + VKN+ G Y ++N G D L
Sbjct: 151 PLQFEWQKLSDSQTMPTPWLA---EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLR 207
Query: 1515 VRVL 1518
+ V+
Sbjct: 208 LDVV 211
Score = 40.8 bits (95), Expect = 0.002
Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 23/185 (12%)
Query: 605 DLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---------VPANKTDVKIPDLTKG 655
D+ W +D I+ +K + L+ V + + + +L
Sbjct: 35 DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS 94
Query: 656 QEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQ---F 712
++ G + +++ P D + G + +++
Sbjct: 95 DIGTYQCKVKKAPGVANKKFLLTVLV------KPSGTRCFVDGSEEIGN--DFKLKCEPK 146
Query: 713 IGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
G P + W + + ++ N SGTY ++N G D+
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV---KNASSEYSGTYSCTVQNRVGSDQ 203
Query: 773 GSFTI 777
+
Sbjct: 204 CMLRL 208
Score = 35.0 bits (80), Expect = 0.16
Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 275 KIKTPLKDIIIKAGKILNVEIQFIGEP----PPEVTWTIDGKELKTDSV----------- 319
I TP + I G+ + +F P P ++ W I + +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 320 ---------RTTVTS---IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLET 367
R TS +N N + SD GTY +++ G F +TVL
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 368 ISKT 371
S T
Sbjct: 122 PSGT 125
Score = 33.5 bits (76), Expect = 0.53
Identities = 5/64 (7%), Positives = 10/64 (15%), Gaps = 1/64 (1%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIA-IATPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
P G K C W + ++
Sbjct: 119 LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Query: 2067 TFYS 2070
+ +
Sbjct: 179 SVKN 182
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 67.1 bits (163), Expect = 3e-12
Identities = 27/187 (14%), Positives = 49/187 (26%), Gaps = 30/187 (16%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G SV TC +P +W + + G T +N + Y+
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHY----------------KNHRRANKYDVIWLHN 2210
A E+ + + + P IH + ++ ++ L
Sbjct: 72 TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131
Query: 2211 NKEIKPSNDF----AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS-------SC 2259
+ +K S + + + V C A E S
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
Query: 2260 TLLVQVS 2266
L V +S
Sbjct: 192 ELQVYIS 198
Score = 54.4 bits (130), Expect = 5e-08
Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 27/185 (14%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY-SSLRKLQIDRFSI 2082
G SV TC +P +W + + G T + + +
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71
Query: 2083 QDTSFDRR---------QAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHN 2130
T R+ + P+ S G+ + C V +
Sbjct: 72 TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131
Query: 2131 NQELK--QSVKFMKRYAGDDYTFVINRT-KMEDRG-EYIIRAENHYG-------YREEVV 2179
+ +K + ++ R + + + + T +ED G + RA+ H R+ V
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
Query: 2180 FLNVQ 2184
L V
Sbjct: 192 ELQVY 196
Score = 40.5 bits (94), Expect = 0.003
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 278 TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNT 337
TP + + G +++ G P +W + VT+ G + +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID----SPLNGKVTNEGTTSTLTMNPV 61
Query: 338 KRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ +Y S + E V +
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEI 88
Score = 36.3 bits (83), Expect = 0.066
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 693 TPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNT 752
TP + + G +++ G P +W + VT+ G + +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID----SPLNGKVTNEGTTSTLTMNPV 61
Query: 753 KRSDSGTYHLELRNTSGRDEGSFTI 777
+ +Y S + E +
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQV 86
Score = 33.6 bits (76), Expect = 0.51
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELK 2052
+ P+ S G+ + C V + + +K
Sbjct: 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK 136
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 63.6 bits (155), Expect = 4e-12
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 273 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 332
+ ++ ++ G +L + + + W DG +L + RT +T +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESN-RTRITG-EEVEVQ 59
Query: 333 NTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETIS 369
++ +DSG Y + SG D F+V V + +
Sbjct: 60 DS---VPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 62.0 bits (151), Expect = 1e-11
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 2092 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
++ ++ +S + G ++ CR+ ++ W + +L +S R
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAES----NRTRITGEEV 56
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + D G Y + G +NV
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 59.3 bits (144), Expect = 1e-10
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ WL + ++ SN + +++ + P DSG+Y C + G + ++ V
Sbjct: 34 INWLRDGVQLAESNRTRITG----EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 54.3 bits (131), Expect = 6e-09
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIV 747
+ ++ ++ G +L + + + W DG +L + RT +T +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESN-RTRITG-EEVEV- 58
Query: 748 NTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
++ +DSG Y + SG D F++
Sbjct: 59 --QDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 46.2 bits (110), Expect = 5e-06
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
V G+ + + W + + +S+ R + + V++S +
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTR----ITGEEVEVQDSVPA 64
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRP-HPPEN 1526
D G Y +P+G DT V V D P +
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
Score = 42.8 bits (101), Expect = 8e-05
Identities = 7/49 (14%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 2009 AAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKF 2057
++ ++ +S + G ++ CR+ ++ W + +L +S +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRT 49
Score = 36.2 bits (84), Expect = 0.016
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLN 2319
++W +DG +++ T+I +++ + D G Y S+ G FS+N
Sbjct: 33 SINWLRDGVQLAESN----RTRITGEE-VEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Query: 2320 VV 2321
V
Sbjct: 88 VS 89
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 68.1 bits (167), Expect = 7e-12
Identities = 49/224 (21%), Positives = 82/224 (36%), Gaps = 54/224 (24%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
+ + +G GAFG V G A V +H+ + L+ E+ I+ +
Sbjct: 31 LGKPLGRGAFGQVIEA--DAFGIDKTATCRTVAVKMLKEGATHSEHRALMS-ELKILIHI 87
Query: 1743 -HHPKLINLHDA-FEDDDEMVLIFEFLSGGEL---------------FERITAPDYKMSE 1785
HH ++NL A + +++I EF G L ++
Sbjct: 88 GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL 147
Query: 1786 AEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVK 1845
+I Y QV + ++ + + IH D+ NI+ +N VK+ DFGLA + +
Sbjct: 148 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKN--VVKICDFGLARDIYKDPDYV 205
Query: 1846 ISTGTAEFAAPEIVEREPV----------GFYT---DMWAVGVL 1876
R P+ YT D+W+ GVL
Sbjct: 206 RKGDA----------RLPLKWMAPETIFDRVYTIQSDVWSFGVL 239
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 66.4 bits (161), Expect = 9e-12
Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 18/194 (9%)
Query: 1221 SPFDPPDAPSQPEVTG---YSPSSVSLAWNPPANH-----GGRPITGYYVEKRERGGEWL 1272
+P ++ +P+ T + S W +H G + +E EW
Sbjct: 22 NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWK 81
Query: 1273 RANNYPTTNLN---FTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
+Y + N F Y ++ + K +IVQ
Sbjct: 82 ECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTL 141
Query: 1330 EAPKVDRITKDSVTLSWRPPK---HDGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHT 1385
+ I + + W P+ G + Y +Q K W P+
Sbjct: 142 LNVSLTGIH-ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW--KMMDPILTTSVP 198
Query: 1386 VGNLSEGEEYTFRV 1399
V +L +EY RV
Sbjct: 199 VYSLKVDKEYEVRV 212
Score = 60.6 bits (146), Expect = 7e-10
Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 17/192 (8%)
Query: 485 PDKPSPPEGPLEVSNVTKESCKL--SWRVPVDDGGAPILHYIIEKMDISRGTWSDA---- 538
K + P + E W V G + + W+
Sbjct: 24 GLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKEC 83
Query: 539 -----GMTVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEK 593
S +++ Y ++ + + +
Sbjct: 84 PDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLN 143
Query: 594 PTVKDWGEDFVDLAWKPPLN---DGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIP 650
++ D + W+ P N G + +Y +Q KE W P T V +
Sbjct: 144 VSLTGIHADIQ-VRWEAPRNADIQKGWMVLEYELQYKEVNETKWKM--MDPILTTSVPVY 200
Query: 651 DLTKGQEYEFRV 662
L +EYE RV
Sbjct: 201 SLKVDKEYEVRV 212
Score = 54.1 bits (129), Expect = 1e-07
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSE----ITNYVVEKKDYNSTVWTKVSSYVTT 1576
P+ ++ + +WT +G Y + W + YV+
Sbjct: 30 SGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSA 89
Query: 1577 P----FVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDS 1632
+ +I Y ++ + K ++D I P +
Sbjct: 90 GENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKC-FSVDEIVQPDPPIALNWTLLNVSLTG 148
Query: 1633 TEDSISLVWSKPR---HDGGSPIQRYIVEKRLISDDKW 1667
I + W PR G + Y ++ + +++ KW
Sbjct: 149 IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW 186
Score = 52.1 bits (124), Expect = 5e-07
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 12/158 (7%)
Query: 418 HLPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPKE----FFTVKGLTEGKKYVFRIRTENM 473
++ Y + WK P + +F + Y ++ +
Sbjct: 57 GTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGG 116
Query: 474 YGASEPLDPLFPDKPSPPEGP-LEVSNVTKE----SCKLSWRVPVD---DGGAPILHYII 525
+ +P PP + NV+ ++ W P + G +L Y +
Sbjct: 117 TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYEL 176
Query: 526 EKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKA 563
+ +++ W ++ V L KEY RV++
Sbjct: 177 QYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRS 214
Score = 51.7 bits (123), Expect = 7e-07
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 35/193 (18%)
Query: 1139 PFTVPDPPGQPQIVD---WDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQ 1195
P + G+P+ + + W G ++ + T ++
Sbjct: 23 PGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQ-EWK 81
Query: 1196 QCHADVGQTPHGWWLQDSRIQGRI--------------QSPFDP-----PDAPSQPEVTG 1236
+C V + + S I + F PD P T
Sbjct: 82 ECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTL 141
Query: 1237 YSPS------SVSLAWNPPAN---HGGRPITGYYVEKRERG-GEWLRANNYPTTNLNFTV 1286
+ S + + W P N G + Y ++ +E +W P + V
Sbjct: 142 LNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW--KMMDPILTTSVPV 199
Query: 1287 HDLREGGKYEFRV 1299
+ L+ +YE RV
Sbjct: 200 YSLKVDKEYEVRV 212
Score = 50.2 bits (119), Expect = 2e-06
Identities = 25/196 (12%), Positives = 49/196 (25%), Gaps = 18/196 (9%)
Query: 67 ALQWLHIPSPPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPM 124
++ + P + W G + + T W
Sbjct: 20 SVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQE 79
Query: 125 GDVSGTYTRA---------ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 175
Y A Y ++ + + + P
Sbjct: 80 WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139
Query: 176 RPGQPTVTDWGKDHVDLEWTPPK---KDGGSPISQYIIEKKPKYGP-WEKACIVPANITA 231
++T + + W P+ G + +Y ++ K W+ + T+
Sbjct: 140 TLLNVSLTG-IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILT--TS 196
Query: 232 TSVPDLKEGEEYEFRV 247
V LK +EYE RV
Sbjct: 197 VPVYSLKVDKEYEVRV 212
Score = 48.7 bits (115), Expect = 7e-06
Identities = 23/186 (12%), Positives = 54/186 (29%), Gaps = 15/186 (8%)
Query: 1016 TGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSL--SWKPPLDDG--- 1070
+G ++ L+ P + P K + P +PE + W + G
Sbjct: 2 SGSEATAAILSRAPWSLQSVNPGL-KTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKN 60
Query: 1071 -GSPITNYVVEKYESATGFWSKLSSFVRSPAY----DVFGLETNRQYRFRVRAENQYGVS 1125
G Y + T W + +V + + Y ++ +
Sbjct: 61 EGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDE 120
Query: 1126 EPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRT---DGGSKIQGYKVEFR 1182
+ +D + P + + + + W+ PR G + Y+++++
Sbjct: 121 KCFSVDEIVQP-DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYK 179
Query: 1183 STRTAT 1188
Sbjct: 180 EVNETK 185
Score = 44.0 bits (103), Expect = 3e-04
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 1493 SDGGQYRLQLKNPAG-FDTATLHVRVLDRPHPPENLH------ADEFAGDSLTLYWTPPR 1545
S Y ++L + G D V + +P PP L+ + + + W PR
Sbjct: 102 SIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPR 161
Query: 1546 D---NGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+ G + Y ++ K+ N T W + +TT V +L + YE RV
Sbjct: 162 NADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSV-PVYSLKVDKEYEVRV 212
Score = 39.4 bits (91), Expect = 0.008
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 1015 VTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLD---DGG 1071
+T + ++ + +P + W+ P + G
Sbjct: 111 LTSNGGTVDEKCFSV--DEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKG 168
Query: 1072 SPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRA 1118
+ Y ++ E W K+ + + + V+ L+ +++Y RVR+
Sbjct: 169 WMVLEYELQYKEVNETKW-KMMDPILTTSVPVYSLKVDKEYEVRVRS 214
Score = 36.0 bits (82), Expect = 0.11
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 11/132 (8%)
Query: 1311 SKPTDIVQCKEQKRKPDPPEAPKVDR---ITKDSVTLSWRPPKHDGGARIKGYIVQKRKK 1367
S+ +Q K + PK + +++ + W H G + ++
Sbjct: 12 SRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRR 71
Query: 1368 GGDWVDANSVPVPNPVHTVGN--------LSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
P+ V N S Y ++ + + + V
Sbjct: 72 NTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQP 131
Query: 1420 EEQPNKPVMDLS 1431
+ L+
Sbjct: 132 DPPIALNWTLLN 143
Score = 30.9 bits (69), Expect = 4.0
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 926 DHHATVPRLLEGTTYEFRVRA-ENLQGL----SEPITTKEP 961
V L YE RVR+ + G SE + P
Sbjct: 194 TTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP 234
Score = 30.6 bits (68), Expect = 5.6
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 87 TKSSCNLEWRAPRD---DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDY 143
+ + W APR+ G +L Y ++ ++ +W M + T +L +Y
Sbjct: 149 IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEY 208
Query: 144 NFRVKA 149
RV++
Sbjct: 209 EVRVRS 214
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 61.9 bits (151), Expect = 1e-11
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
P AP+ T + SS++L+W ++ G +TGY V G L T
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV---YNGTA-LATT---VTGTTA 53
Query: 1285 TVHDLREGGKYEFRVIAINEAG 1306
T+ L Y F V A + AG
Sbjct: 54 TISGLAADTSYTFTVKAKDAAG 75
Score = 60.0 bits (146), Expect = 6e-11
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSV-PVPNPVH 1384
P P T S+TLSW + G + GY V + V
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV--------YNGTALATTVTGTTA 53
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
T+ L+ YTF V A + AGN S V V
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSA--ASNAVSV 86
Score = 51.1 bits (123), Expect = 6e-08
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P+ P L + T S +LSW D+ G +T Y V Y L++ V
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDV--YNGTA-----LATTVTGTTA 53
Query: 1102 DVFGLETNRQYRFRVRAENQYG-VSEP 1127
+ GL + Y F V+A++ G VS
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAA 80
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 1580
P P NL + S+TL WT DN G +T Y V + + T V+ T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYN---GTALATTVTGTTAT---- 54
Query: 1581 VRNLAIGSTYEFRVMAENQYG 1601
+ LA ++Y F V A++ G
Sbjct: 55 ISGLAADTSYTFTVKAKDAAG 75
Score = 47.7 bits (114), Expect = 1e-06
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
P AP + L+W ++ G +T Y + Y AL T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV--------YNGTALATTVTGTTA 53
Query: 648 KIPDLTKGQEYEFRVIAVNEAG-PSEPSDA 676
I L Y F V A + AG S S+A
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNA 83
Score = 47.7 bits (114), Expect = 1e-06
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
P+ P L + T SS L W A D+ G + Y V V+GT
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTTAT 54
Query: 134 AENLIEGHDYNFRVKAVNKIG 154
L Y F VKA + G
Sbjct: 55 ISGLAADTSYTFTVKAKDAAG 75
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
P P T + L WT + G ++ Y + Y A V T +
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV-----YNGTALATTVTG--TTAT 54
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
+ L Y F V A + G S AS V+
Sbjct: 55 ISGLAADTSYTFTVKAKDAA--GNVSAASNAVS 85
Score = 41.9 bits (99), Expect = 1e-04
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYD 547
P+ P L + T S LSW D+ G + Y D+ GT + A
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGY-----DVYNGT-ALATTVTGTTAT 54
Query: 548 VPRLIHRKEYLFRVKAVNSIG----ESDTLETT 576
+ L Y F VKA ++ G S+ +
Sbjct: 55 ISGLAADTSYTFTVKAKDAAGNVSAASNAVSVK 87
Score = 36.5 bits (85), Expect = 0.009
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 1873 VGVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAG-FSKPSST 1930
VGV Y DV T V T + L Y F VKAK+AAG S S+
Sbjct: 31 VGVTGY--DVYNGTA-LATT---VTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNA 83
Score = 33.8 bits (78), Expect = 0.097
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIV 850
P P T S+TLSW + G + GY V
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV 38
Score = 30.3 bits (69), Expect = 1.6
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 1621 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIV 1657
P AP T SI+L W+ + G + Y V
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV 38
Score = 29.2 bits (66), Expect = 3.2
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 1141 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTAT 1188
P P T++ TL W + G + GY V + T
Sbjct: 2 MAPTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTALATT 47
Score = 28.4 bits (64), Expect = 6.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 929 ATVPRLLEGTTYEFRVRAENLQG----LSEPIT 957
AT+ L T+Y F V+A++ G S ++
Sbjct: 53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVS 85
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Length = 182
Score = 64.9 bits (158), Expect = 1e-11
Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 34/180 (18%)
Query: 2108 GQSVKFTCRVIAIA--TPTLTWFHNNQEL--------KQSVKFMKRYAGD-DYTFVINRT 2156
GQ + ++ + W + + K++ K Y + T I
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 2157 KMEDRGEYIIRAENHYG--YREEVVFLNVQRKYDLPVIHYKN--------HRRANKYDVI 2206
K +D+ Y + + G E++ L +Q + P I + ++
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELN 133
Query: 2207 WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
+ K +K S + + S + C A N + S V
Sbjct: 134 LYQDGKHLKLS-----------QRVITHKWTTSLSAKFKCTAGNKVSK--ESSVEPVSCP 180
Score = 55.3 bits (133), Expect = 2e-08
Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 43/187 (22%)
Query: 2025 GQSVKFTCRVIAIA--TPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLR-------KL 2075
GQ + ++ + W + + K + ++ + TF L
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKK-----IAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 2076 QIDRFSIQDT---------SFDRRQAAPRF-------VIKPQSAFCYEGQSVKFTCRVIA 2119
+I D + + F V KP+ ++ + TC V+
Sbjct: 69 KIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--TCINTTLTCEVMN 126
Query: 2120 IATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVV 2179
P L + + + LK S + + ++ ++ A N V
Sbjct: 127 GTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKVSKESSVE 175
Query: 2180 FLNVQRK 2186
++ K
Sbjct: 176 PVSCPEK 182
Score = 54.1 bits (130), Expect = 4e-08
Identities = 18/155 (11%), Positives = 45/155 (29%), Gaps = 46/155 (29%)
Query: 2182 NVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDS 2241
+ Q D+ I ++ + ++K + KE D + TLKI + +D
Sbjct: 23 SFQMSDDIDDIKWE--KTSDKKKIAQFRKEKETFKEKD--TYKLFKNGTLKIKHLKTDDQ 78
Query: 2242 GVYTCEAFNDEGESFSSCTLLVQV------------------------------SWYKDG 2271
+Y ++ +G++ +++ + Y+DG
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138
Query: 2272 NPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQYS 2306
+ ++ T ++
Sbjct: 139 KHLKLSQ------------RVITHKWTTSLSAKFK 161
Score = 49.1 bits (117), Expect = 2e-06
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 290 ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV--------NTKRSD 341
L++ + + ++ W + K R + + K D
Sbjct: 18 NLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDD 77
Query: 342 SGTYHLELRNTSGRD--EGSFTVTVLETISKTNTTTISS 378
Y + + +T G++ E F + + E +SK +
Sbjct: 78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCI 116
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/177 (11%), Positives = 47/177 (26%), Gaps = 35/177 (19%)
Query: 1435 DITVKAGEDFSIHVPFMAFPQP-------------AAFWFANDSIIDDSDTRVHKQLTMN 1481
+ G+D ++ +P F +
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK---LFK 64
Query: 1482 SASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHVRVLDRPHPPE--------NLHADE 1531
+ +L +K+ + D Y++ + + G + +++ +R P+ L +
Sbjct: 65 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEV 124
Query: 1532 FAGDSLTLYWTPPRDN----GGSEITNYVVEKKD---YNSTVWTKVSSYVTTPFVRV 1581
G L +D + + + T KVS + V
Sbjct: 125 MNGTDPELNLY--QDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 41.4 bits (97), Expect = 0.001
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 705 ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV--------NTKRSD 756
L++ + + ++ W + K R + + K D
Sbjct: 18 NLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDD 77
Query: 757 SGTYHLELRNTSGRDEGSFTI 777
Y + + +T G++
Sbjct: 78 QDIYKVSIYDTKGKNVLEKIF 98
Score = 39.5 bits (92), Expect = 0.005
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 21/121 (17%)
Query: 244 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPP 303
++V + G K + + R PKI + + + + P
Sbjct: 80 IYKVSIYDTKGKNVLEK-IFDLKIQERVSKPKISWTCINT--------TLTCEVMNGTDP 130
Query: 304 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVT 363
E+ DGK LK V T S S + N ++ V+
Sbjct: 131 ELNLYQDGKHLKLSQR------------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Query: 364 V 364
Sbjct: 179 C 179
Score = 36.4 bits (84), Expect = 0.046
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 30/183 (16%)
Query: 600 GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYE 659
+D D+ W+ I + +KEK + ++ N T +KI L +
Sbjct: 27 SDDIDDIKWE--KTSDKKKIAQF---RKEKETFKEKDTYKLFKNGT-LKIKHLKTDDQDI 80
Query: 660 FRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPL-KDIIIKAGKILNVEIQFIGEPPP 718
++V + G + D+ KI+ + K I + + + P
Sbjct: 81 YKVSIYDTKGKNVLEKIFDL----------KIQERVSKPKISWTCINTTLTCEVMNGTDP 130
Query: 719 EVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI- 777
E+ DGK LK V T S S + N ++ +
Sbjct: 131 ELNLYQDGKHLKLSQR------------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Query: 778 VPD 780
P+
Sbjct: 179 CPE 181
Score = 35.6 bits (82), Expect = 0.086
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM 2058
+ TC V+ P L + + + LK S + +
Sbjct: 114 TCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVI 148
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell
adhesion, cell junction, glycoprotein, immunoglobulin
domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB:
3mj7_A* 3mj9_A*
Length = 268
Score = 66.8 bits (162), Expect = 1e-11
Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 60/238 (25%)
Query: 2089 RRQAAPRFVIKPQSAFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELKQSVKFMKRYA 2145
R Q P + + G+SV C V + W + + S + Y+
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 2146 G--------------------DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQR 2185
+D + ++ + D G Y + +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 2186 KYDLPVI-------------HYKNHRRANKYDVIWLHNNKE-IKPSNDFAYSSVAHVH-- 2229
+ P ++ V W+ ++ + +Y S
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 2230 ---------------------TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
++K+ + D G+YTC + + ES + L V
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Score = 49.9 bits (118), Expect = 3e-06
Identities = 25/235 (10%), Positives = 52/235 (22%), Gaps = 57/235 (24%)
Query: 2006 RRQAAPRFVIKPQSAFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELKQSVKFMKRYA 2062
R Q P + + G+SV C V + W + + S + Y+
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 2063 GDDY---------TFYSSLRK----LQIDRFSIQDT---------SFDRRQAAPR----- 2095
L + D +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 2096 FVIKPQSAFCYEGQSVKFTCRVIAIATP---TLTWF------------------------ 2128
+P+ G + + C + + + W
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 2129 HNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
+ + V + +D + + K D+G Y + + L+V
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 44.1 bits (103), Expect = 3e-04
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 24/128 (18%)
Query: 1434 RDITVKAGEDFSIH---VPFMAFPQPAAFWFANDSIIDDSDT-----------------R 1473
+ V GE + W + D S+ R
Sbjct: 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNR 72
Query: 1474 VH--KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADE 1531
H N SL++++ Q++D G Y +++ V + P P +L
Sbjct: 73 SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132
Query: 1532 FAGDSLTL 1539
GD+ +
Sbjct: 133 --GDTTQM 138
Score = 40.6 bits (94), Expect = 0.004
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
+ ++ N S+ ++ + SD G Y + T+ + V+
Sbjct: 190 VDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Score = 32.9 bits (74), Expect = 1.0
Identities = 9/91 (9%), Positives = 20/91 (21%), Gaps = 23/91 (25%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTV----------------------- 335
+ +V W + + S ++
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
K SD G Y + + + V++
Sbjct: 207 TVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Score = 31.8 bits (71), Expect = 2.3
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 26/118 (22%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQ-----FIGEPPPEVTWTIDGKELKTDSVRTTVTS- 325
P + + + G+ +V + + V W + S
Sbjct: 4 GLPGLTVSSPQLRVHVGE--SVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 326 --------IGYHTIVNTV----------NTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
+V + +++D G Y E+R + V +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus}
Length = 201
Score = 65.1 bits (158), Expect = 1e-11
Identities = 28/190 (14%), Positives = 50/190 (26%), Gaps = 43/190 (22%)
Query: 2106 YEGQSVKFTC---RVIAIATPTLTWFHNNQELKQ-----------------SVKFMKRYA 2145
+ G+ V T RV ++WF +Q F +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYD- 2204
+ + V+ + G Y+ R + + L+V + + + R
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP---LTLSVHSERSQFPDFS 120
Query: 2205 ---------------VIWLHNN-KEIKPSNDFAYSSVAHVHTLKIAEIF---PEDSGVYT 2245
V WL E P+ +L +A T
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVT 180
Query: 2246 CEAFNDEGES 2255
C ND+ E+
Sbjct: 181 CVGKNDKEEA 190
Score = 64.7 bits (157), Expect = 2e-11
Identities = 19/185 (10%), Positives = 39/185 (21%), Gaps = 34/185 (18%)
Query: 2023 YEGQSVKFTC---RVIAIATPTLTWFHNNQELKQ----SVKFMKRYAGDDYTFY------ 2069
+ G+ V T RV ++WF +Q + + + +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 2070 SSLRKLQIDRFSIQD---------TSFDRRQAA--------PRFVIKPQSAFCYEGQSVK 2112
++ L + +I + + + + +
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLT 123
Query: 2113 FTCRVIAIATPTLTWFHNNQELKQSVKFMKRYA----GDDYTFVINRTKMEDRGEYIIRA 2168
TC V A P + W G V
Sbjct: 124 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 2169 ENHYG 2173
+N
Sbjct: 184 KNDKE 188
Score = 52.3 bits (125), Expect = 3e-07
Identities = 10/97 (10%), Positives = 22/97 (22%), Gaps = 3/97 (3%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV---RTTVTSIGY 328
+ + +L V P P V W + + G
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS 162
Query: 329 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVL 365
++ ++ + +N G + L
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYL 199
Score = 50.8 bits (121), Expect = 1e-06
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 3/90 (3%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSV---RTTVTSIGYHT 745
+ + +L V P P V W + + G +
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSF 775
+ ++ + +N G +
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHGVY 194
Score = 44.6 bits (105), Expect = 1e-04
Identities = 6/54 (11%), Positives = 12/54 (22%)
Query: 2008 QAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY 2061
+ + + + + TC V A P + W
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155
Score = 42.3 bits (99), Expect = 6e-04
Identities = 9/40 (22%), Positives = 11/40 (27%)
Query: 2226 AHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
A+ L + G Y C E E L V
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK 103
Score = 41.6 bits (97), Expect = 0.001
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 1436 ITVKAGED--FSIHVPFMAF-PQPAAFWFANDSIIDDSD-TRVHKQLTM----------- 1480
+T GE + + ++ P+ WF + R+H +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 1481 ----NSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP---HPPENLHADEFA 1533
N+ LVV + S G Y ++K T H+ V+ E +
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-- 118
Query: 1534 GDSLTL 1539
LT+
Sbjct: 119 FSVLTV 124
Score = 37.7 bits (87), Expect = 0.020
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIID---DSDTRVHKQLTMNSASLVVKNS 1490
++ AFP P W + + ++ V K+ + + V +
Sbjct: 112 ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSL 171
Query: 1491 QRSDGGQYRLQLKNPAG 1507
+ KN
Sbjct: 172 PKPWHLPVTCVGKNDKE 188
Score = 32.3 bits (73), Expect = 1.3
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSI--------GYHTIVNTVNT--------KRSDS 342
P EV+W G + + + G+ I + NT S
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 343 GTYHLELRNTSGRDEGSFTVTVLE 366
G Y ++ ++V++
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSVVK 103
Score = 30.8 bits (69), Expect = 3.6
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 714 GEPPPEVTWTIDGKELKTDSV-RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
P EV+W G + + R I + T+ L + + +
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 773 GSFT 776
G++
Sbjct: 80 GNYL 83
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 67.3 bits (165), Expect = 1e-11
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 48/224 (21%)
Query: 1692 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---------SHNLEKELIRKEIDIMNQL 1742
+ +IG GAFG V + R G + F V S +++ + R E +M +
Sbjct: 51 YVRDIGEGAFGRVFQARAP--GLLPYEPFTMVAVKMLKEEASADMQADFQR-EAALMAEF 107
Query: 1743 HHPKLINLHDAFEDDDEMVLIFEFLSGGEL-----------------------FERITAP 1779
+P ++ L M L+FE+++ G+L +
Sbjct: 108 DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPG 167
Query: 1780 DYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD 1839
+S AE + RQV + ++ E+ +H D+ N + VK+ DFGL+ +
Sbjct: 168 PPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENM--VVKIADFGLSRNIY 225
Query: 1840 PNEVVKISTGTA---EFAAPE-IVEREPVGFYT---DMWAVGVL 1876
+ K A + PE I YT D+WA GV+
Sbjct: 226 SADYYKADGNDAIPIRWMPPESIFY----NRYTTESDVWAYGVV 265
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens}
PDB: 2x1x_R*
Length = 213
Score = 65.2 bits (158), Expect = 2e-11
Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 28/186 (15%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+ ++V C +I+ ++ E + + F I + G
Sbjct: 23 KNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRAN-------------------KYDVIW 2207
A+ + + ++++ V Y + + D W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 2208 LHNNKEIKPSNDFAYSSVAHVH--------TLKIAEIFPEDSGVYTCEAFNDEGESFSSC 2259
+ + + + TL I + D G+YTC A + +S
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 2260 TLLVQV 2265
+ V
Sbjct: 202 FVRVHE 207
Score = 52.9 bits (126), Expect = 3e-07
Identities = 19/201 (9%), Positives = 48/201 (23%), Gaps = 44/201 (21%)
Query: 2024 EGQSVKFTCRV-IAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSI 2082
+ ++V C I+ +L + + + + S + I + I
Sbjct: 23 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPD---------GNRISWDSKKGFTIPSYMI 73
Query: 2083 QD---------------------TSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAI- 2120
+ + G+ + C
Sbjct: 74 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL 133
Query: 2121 -ATPTLTWFHNNQELKQSVKFMKRYAGDD--------YTFVINRTKMEDRGEYIIRAENH 2171
W + + + + + T I+ D+G Y A +
Sbjct: 134 NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG 193
Query: 2172 YGYREEVVFLNVQRKYDLPVI 2192
++ F+ V ++ P+
Sbjct: 194 LMTKKNSTFVRV---HEDPIE 211
Score = 50.2 bits (119), Expect = 2e-06
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 1404 EAGNSEPGKQSGPVIVEEQPNKPV-MDLSGVRDITVKAGEDFSIHVPFMAFPQPAA--FW 1460
EA ++ QS IV + + LS I + GE ++ W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 1461 FANDSIIDDSD-------TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
S T+ ++ ++L + RSD G Y + +
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 1514 HVRVLDRPHPP 1524
VRV + P
Sbjct: 202 FVRVHEDPIEG 212
Score = 44.8 bits (105), Expect = 1e-04
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 11/128 (8%)
Query: 248 IAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEV-- 305
A + S V R + +P I + G+ L + E +
Sbjct: 82 EAKINDESYQ-SIMYIVVVVGYRIYDVVL-SPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 306 TWTIDGKELKTDSVRTTVTSIGYHTIVNTV-------NTKRSDSGTYHLELRNTSGRDEG 358
W + + + + + RSD G Y + +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 359 SFTVTVLE 366
S V V E
Sbjct: 200 STFVRVHE 207
Score = 38.6 bits (89), Expect = 0.014
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 11/144 (7%)
Query: 643 NKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKA 702
+K IP A + S +++ R + +P I +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQ-SIMYIVVVVGYRIYDVVL-SPSHGIELSV 119
Query: 703 GKILNVEIQFIGEPPPEV--TWTIDGKELKTDSVRTTVTSIGYHTIVNTV-------NTK 753
G+ L + E + W + + + + +
Sbjct: 120 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 179
Query: 754 RSDSGTYHLELRNTSGRDEGSFTI 777
RSD G Y + + S +
Sbjct: 180 RSDQGLYTCAASSGLMTKKNSTFV 203
Score = 32.1 bits (72), Expect = 1.5
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 13/124 (10%)
Query: 1965 RIRSKYEGWDECVLPLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYE 2024
Y G C + S S + + + + I D +
Sbjct: 70 SYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV----------LSPSHGIELSV 119
Query: 2025 GQSVKFTCRVIAI--ATPTLTWFHNNQELKQSVKFMKRY-AGDDYTFYSSLRKLQIDRFS 2081
G+ + C W + + + + + L L ID +
Sbjct: 120 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 179
Query: 2082 IQDT 2085
D
Sbjct: 180 RSDQ 183
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 62.3 bits (151), Expect = 2e-11
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 1035 GRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS 1094
G + P L V+D+T S L+W+ P ++++ +
Sbjct: 1 GSSGSSGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPR 56
Query: 1095 FVRSP---------AYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDP 1145
+ + + L + Y + ++ + TA+ T+ P
Sbjct: 57 PLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI----QGTAR---TLSGP 109
Query: 1146 P 1146
Sbjct: 110 S 110
Score = 58.8 bits (142), Expect = 3e-10
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 172 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-----WEKACIVP 226
G R Q +VTD + L W P S + ++ + P ++ +VP
Sbjct: 7 GSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 66
Query: 227 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
+ + DL+ G Y + + + + +A
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
Score = 57.7 bits (139), Expect = 6e-10
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
V +T S+ L+W P ++++ ++ + P+
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 1386 VG---------NLSEGEEYTFRVIAVNEAGNSEP 1410
V +L G Y+ + + ++
Sbjct: 65 VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 53.8 bits (129), Expect = 1e-08
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 15/107 (14%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD------- 126
P L +++T SS L W AP +++ P
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 127 -VSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 170
V GT A +L G Y+ + + ++ + + T P
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSGP 109
Score = 53.8 bits (129), Expect = 2e-08
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 486 DKPSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLF 545
P L V++VT S +L+W P +++ S T +
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 546 ----------YDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVA 581
+ L Y + + ++D+++ T T++
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLS 107
Score = 53.4 bits (128), Expect = 2e-08
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 587 EPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNA----LEVPA 642
+ +V D + L W+ P S + + + P+ L VP
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPG 67
Query: 643 NKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ + DL G Y + + ++ +
Sbjct: 68 TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102
Score = 52.3 bits (125), Expect = 4e-08
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNF 1284
SQ VT + SS+ L W P + + L + P
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 1285 TV---------HDLREGGKYEFRVIAINEAGPGKP 1310
V DLR G Y + +
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 45.0 bits (106), Expect = 2e-05
Identities = 15/146 (10%), Positives = 30/146 (20%), Gaps = 52/146 (35%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
V +T S+ L+W P ++++ ++ + P+
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
V H A +
Sbjct: 65 ------------------------------------------------VPGTRHSAVLRD 76
Query: 934 LLEGTTYEFRVRAENLQGLSEPITTK 959
L GT Y + ++ I
Sbjct: 77 LRSGTLYSLTLYGLRGPHKADSIQGT 102
Score = 44.2 bits (104), Expect = 3e-05
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 1523 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRV- 1581
L + SL L W P ++++ + + + + V
Sbjct: 11 RLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 66
Query: 1582 --------RNLAIGSTYEFRVMAENQYGLSKPA 1606
R+L G+ Y + +
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI 99
Score = 34.6 bits (79), Expect = 0.076
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 443 TVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKPSPPEG 493
VPG + ++ L G Y + ++ + P G
Sbjct: 64 MVPG--TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112
Score = 32.3 bits (73), Expect = 0.54
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 1900 TYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ ++ L G Y + + +
Sbjct: 71 SAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain,
dscaml1 protein, structural genomics; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 122
Score = 62.4 bits (152), Expect = 2e-11
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPA--NHGGRPITGYYVEKRERGGEWLRANNY----- 1277
P P + + S+ + W P G I GY + RE +
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSIVEMKA 73
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
+ +T+ +L++ +Y V A N AG G S +
Sbjct: 74 TGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINA 112
Score = 53.1 bits (128), Expect = 3e-08
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 568 GESDTLETTKTTVARNEFDEPD-APEKPTVKDWGEDFVDLAWKPPLNDG--GSPITDYII 624
G S + +T E PD P T++ + + WK P + G I Y I
Sbjct: 1 GSSGSS--GIST---EE-AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG-VIRGYQI 53
Query: 625 QKKEKGNP----YWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
+E Y + ++ + + +L K +Y V A N AG S
Sbjct: 54 GYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
Score = 52.8 bits (127), Expect = 5e-08
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPP-KHDGGARIKGYIVQKRKKG----GDWVDANSVPVPN- 1381
PP + +T S+ ++W+ P K I+GY + R+ G + +
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDS 77
Query: 1382 PVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVE 1420
V+T+ NL + +Y V A N AG G S +
Sbjct: 78 EVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINAT 113
Score = 45.1 bits (107), Expect = 2e-05
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 1523 PPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVV-----EKKDYNSTVWTKVSSYV 1574
PP ++ S+ + W P NG I Y + ++ +
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAPKKELQNG--VIRGYQIGYRENSPGSNGQYSIVEMKATG 75
Query: 1575 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA 1623
+ + NL + Y V A N+ G + I A P +
Sbjct: 76 DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS---SEINATTLESGPSS 121
Score = 43.1 bits (102), Expect = 1e-04
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 154 GESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYII 210
G S + A PD P T+ + + W PKK+ G I Y I
Sbjct: 1 GSSGSSGISTEEAA------PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG-VIRGYQI 53
Query: 211 -----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 265
+ ++ +LK+ +Y V A N+ G G S+ +
Sbjct: 54 GYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS---SSEI 110
Query: 266 TCK 268
Sbjct: 111 NAT 113
Score = 42.4 bits (100), Expect = 2e-04
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPL-DDGGSPITNYVV---EKYESATGFWSKLSS 1094
P PP + + +T +S ++WK P + I Y + E + G +S +
Sbjct: 13 AAPDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 1095 FVRSPA--YDVFGLETNRQYRFRVRAENQYGV---SEPLELDNSITAKFPFTVPDPPG 1147
+ Y + L+ QY V+A N+ G S I A T+ P
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE------INAT---TLESGPS 120
Score = 39.7 bits (93), Expect = 0.002
Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 60/154 (38%)
Query: 816 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLL 875
PP + +T S+ ++W+ P
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAP-------------------------------------- 39
Query: 876 SIGYLSQFLAEEKKHGKLLLAKVENGYVIE--KRDLTHGGGWVPAVNHVSPYDHHATVPR 933
+E ++G + GY I + G + + T+
Sbjct: 40 ---------KKELQNGVIR------GYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDN 84
Query: 934 LLEGTTYEFRVRAENLQG---LSEPI--TTKEPV 962
L + Y V+A N G S I TT E
Sbjct: 85 LKKFAQYGVVVQAFNRAGTGPSSSEINATTLESG 118
Score = 36.2 bits (84), Expect = 0.026
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYII---EKMDISRGTWSDAGM 540
P PP + + VT +S +++W+ + I Y I E S G +S M
Sbjct: 13 AAPDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 541 TVS---LFYDVPRLIHRKEYLFRVKAVNSIGES 570
+ Y + L +Y V+A N G
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTG 104
Score = 33.9 bits (78), Expect = 0.18
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 74 PS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMG-DV 127
P PP + +T S + W+AP ++ I Y + E G++ +
Sbjct: 15 PDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKA 73
Query: 128 SGTYTRAE--NLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 170
+G NL + Y V+A N+ G S + T +
Sbjct: 74 TGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINAT---TLESG 118
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 64.3 bits (156), Expect = 3e-11
Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 16/180 (8%)
Query: 508 SWRVPVDDGGAPILHYIIEKMDISRGTWS-----DAGMTVSLFYDVPRLIHRKEYLFRVK 562
W++ + L + + + + + + G + ++ Y +
Sbjct: 20 EWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLW 79
Query: 563 AVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITD- 621
A + + + ++ +P AP TV D + L W P
Sbjct: 80 AGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132
Query: 622 -YIIQKKEKGNPYWMNALEVPANKTDVKIP--DLTKGQEYEFRVIAVNEAGPSEPSDASD 678
Y + + +P V + ++I L G Y RV A +A + S+ S
Sbjct: 133 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 192
Score = 64.3 bits (156), Expect = 3e-11
Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 18/191 (9%)
Query: 1246 WNPPANHGGRPITGYYVEKRERGGEW----LRANNYPTTNLNFTVHDLREGGKYEFRVIA 1301
W + E N + + D+ Y + A
Sbjct: 21 WKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWA 80
Query: 1302 INEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKG-- 1359
+ KP++ V KP P V D++ L+W P
Sbjct: 81 GQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLT 133
Query: 1360 YIVQKRKKGGDWVDANSVPVPNPVHT----VGNLSEGEEYTFRVIAVNEAGNSEPGKQSG 1415
Y V + D V + L G Y RV A +A N+ + S
Sbjct: 134 YAVNIWSENDPA-DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 192
Query: 1416 PVIVEEQPNKP 1426
+P
Sbjct: 193 STKWHNSYREP 203
Score = 61.2 bits (148), Expect = 3e-10
Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 19/192 (9%)
Query: 85 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-----RAENLIE 139
++ S+C EW+ + L + + + + + + + +G ++++
Sbjct: 13 YMSISTC--EWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVS 70
Query: 140 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 199
+Y + A ++ + +P PG TV D + L W+ P
Sbjct: 71 ADNYTLDLWAGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLLLTWSNPYP 123
Query: 200 DGGSPIS--QYIIEKKPKYGPWE-KACIVPANITATSVP--DLKEGEEYEFRVIAVNKGG 254
+ Y + + P + + V + + LK G Y RV A +
Sbjct: 124 PDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAY 183
Query: 255 PGEPSKASAPVT 266
S+ S
Sbjct: 184 NTTWSEWSPSTK 195
Score = 50.4 bits (120), Expect = 1e-06
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 7/125 (5%)
Query: 452 FFTVKGLTEGKKYVFRIRTENMYGASEPLDPLFPDKPSPPEGPLEVSNVTKESCKLSWRV 511
+ + Y + P KP P L V ++ L+W
Sbjct: 62 HLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGN-LTVHTNVSDTLLLTWSN 120
Query: 512 PVDDGGAP------ILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVN 565
P ++ E ++ + SL L Y RV+A
Sbjct: 121 PYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWA 180
Query: 566 SIGES 570
+
Sbjct: 181 QAYNT 185
Score = 50.0 bits (119), Expect = 2e-06
Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 1209 WLQDSRIQGRIQSPFDP-----PDAPSQPEVTGYSPSSVSLAWNPP---ANHGGRPITGY 1260
L + Q + F P P AP V ++ L W+ P N+ +T Y
Sbjct: 77 DLWAGQ-QLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLT-Y 134
Query: 1261 YVEKRERGGEW---LRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
V + Y +L L+ G Y RV A +A S+ +
Sbjct: 135 AVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 194
Query: 1318 QCKEQKRKP 1326
+ R+P
Sbjct: 195 KWHNSYREP 203
Score = 46.2 bits (109), Expect = 4e-05
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 6/132 (4%)
Query: 1479 TMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLT 1538
L++ + +D L + + +P P NL D+L
Sbjct: 57 AGCVCHLLMDDVVSADNYTLDLWAGQQLLWKG-SFKPSEHVKPRAPGNLTVHTNVSDTLL 115
Query: 1539 LYWTPPRDNGG---SEITNYVVEKKDYNSTVWTKVSSYVTTPFVRV--RNLAIGSTYEFR 1593
L W+ P + +T V + + + + P +R+ L G +Y R
Sbjct: 116 LTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR 175
Query: 1594 VMAENQYGLSKP 1605
V A Q +
Sbjct: 176 VRAWAQAYNTTW 187
Score = 45.0 bits (106), Expect = 8e-05
Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 13/156 (8%)
Query: 1536 SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP----FVRVRNLAIGSTYE 1591
T W S + + S T + + + ++ Y
Sbjct: 16 ISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYT 75
Query: 1592 FRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSP 1651
+ A Q + +K P APG + D++ L WS P
Sbjct: 76 LDLWAGQQLLWKGSFKPSEHVK-------PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYL 128
Query: 1652 IQ--RYIVEKRLISDDKWIKASMAHIPDTSLKYTSS 1685
Y V +D + + SL+ +S
Sbjct: 129 YNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAAS 164
Score = 42.3 bits (99), Expect = 7e-04
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN--YVVE-KYESATGFWSKLSSFVR 1097
KP P L V ++ L+W P + Y V E+ + +
Sbjct: 97 KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYL 155
Query: 1098 SPAYDVFG--LETNRQYRFRVRAENQYG 1123
P+ + L++ YR RVRA Q
Sbjct: 156 EPSLRIAASTLKSGISYRARVRAWAQAY 183
Score = 40.0 bits (93), Expect = 0.004
Identities = 16/134 (11%), Positives = 30/134 (22%), Gaps = 13/134 (9%)
Query: 1062 SWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPA----YDVFGLETNRQYRFRVR 1117
WK S + + + + + + + + Y +
Sbjct: 20 EWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLW 79
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQG- 1176
A Q + + P PG + ++ L W P
Sbjct: 80 AGQQLLWKGSFKPSEHVK-------PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132
Query: 1177 -YKVEFRSTRTATD 1189
Y V S D
Sbjct: 133 TYAVNIWSENDPAD 146
Score = 33.5 bits (76), Expect = 0.62
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKG--YIVQKRKKGGDWVDANSVPVPNP 870
KP P V D++ L+W P Y V + D V
Sbjct: 97 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPA-DFRIYNVTYL 155
Query: 871 VHTL 874
+L
Sbjct: 156 EPSL 159
Score = 31.5 bits (71), Expect = 2.5
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQ-GHDYEFRVKAKNAAGFSKPSSTSKE 1933
+ ++R+ N ++ I S L+ G Y RV+A A + S S
Sbjct: 143 DPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPS 193
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 66.2 bits (162), Expect = 3e-11
Identities = 52/265 (19%), Positives = 93/265 (35%), Gaps = 72/265 (27%)
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCR-----E 1709
Y+ + D KW P +L+ + +G+GAFG V +
Sbjct: 28 YVDFREYEYDLKWE------FPRENLE----------FGKVLGSGAFGKVMNATAYGISK 71
Query: 1710 RKTGNIFAAKFIPVSHNLE--KELIRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFEF 1766
A K + + + L+ E+ +M QL H ++NL A + LIFE+
Sbjct: 72 TGVSIQVAVKMLKEKADSSEREALMS-ELKMMTQLGSHENIVNLLGACTLSGPIYLIFEY 130
Query: 1767 LSGGEL----------------------FERITAPDYKMSEAEVINYMRQVCEAVKHMHE 1804
G+L ++ +++ + QV + ++ +
Sbjct: 131 CCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF 190
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKISTGTAEFAAPEIVEREPV 1864
K+ +H D+ N++ VK+ DFGLA + + + R PV
Sbjct: 191 KSCVHRDLAARNVLVTHGK--VVKICDFGLARDIMSDSNYVVRGNA----------RLPV 238
Query: 1865 ----------GFYT---DMWAVGVL 1876
G YT D+W+ G+L
Sbjct: 239 KWMAPESLFEGIYTIKSDVWSYGIL 263
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin
type III, NG-CAM related cell adhesion molecule,
structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 125
Score = 61.7 bits (150), Expect = 4e-11
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGR-PITGYYV--------EKRERGGEWLRAN 1275
P AP V + + + W+P R + GY + KR R +
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKIL 73
Query: 1276 NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
+ + + + L Y V +N G G S
Sbjct: 74 TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
Score = 49.3 bits (118), Expect = 7e-07
Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 13/102 (12%)
Query: 586 DEPD-APEKPTVKDWGEDFVDLAWKPPLND---GGSPITDYIIQKKEKGNPYWMN----- 636
D P AP V ++ W P G + Y I + + N
Sbjct: 12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIE 69
Query: 637 --ALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
L +KT +P L Y V VN G S
Sbjct: 70 KKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD 111
Score = 48.6 bits (116), Expect = 1e-06
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 14/109 (12%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPP--KHDGGARIKGYIVQKRKKGGDW--------VDANSV 1377
P +V+ + + W P K G ++GY + K +
Sbjct: 17 APGNVRVNVVNSTLAEVHWDPVPLKSIRG-HLQGYRIYYWKTQSSSKRNRRHIEKKILTF 75
Query: 1378 PVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
+ L YT V VN G S +
Sbjct: 76 QGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPA---SPDRVFNTPEGSG 121
Score = 42.4 bits (100), Expect = 2e-04
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 16/114 (14%)
Query: 1523 PPENLHADEFAGDSLTLYWTPP---RDNGGSEITNYVV--------EKKDYNSTVWTKVS 1571
P N+ + ++W P G + Y + K++ ++
Sbjct: 17 APGNVRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILT 74
Query: 1572 SYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPG 1625
+ + L S Y V N G + P + G
Sbjct: 75 FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS---PDRVFNTPEGSGPSSG 125
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 190 VDLEWTPPKKD---GGSPISQYII--------EKKPKYGPWEKACIVPANITATSVPDLK 238
++ W P G + Y I K+ + +K + T +P L+
Sbjct: 31 AEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88
Query: 239 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK 268
Y V VN G G S
Sbjct: 89 PFSHYTLNVRVVNGKGEGPA---SPDRVFN 115
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 15/100 (15%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPPLDD---GGSPITNYVV--------EKYESATG 1087
D P P + V+ + + W P G + Y + K
Sbjct: 12 DLPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHI 68
Query: 1088 FWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1127
L+ + GLE Y VR N G
Sbjct: 69 EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPA 108
Score = 33.2 bits (76), Expect = 0.27
Identities = 22/152 (14%), Positives = 34/152 (22%), Gaps = 57/152 (37%)
Query: 816 PPEAPKVDRITKDSVTLSWRPP--KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 873
P +V+ + + W P K G ++GY + K N + + T
Sbjct: 17 APGNVRVNVVNSTLAEVHWDPVPLKSIRG-HLQGYRIYYWKTQ-SSSKRNRRHIEKKILT 74
Query: 874 LLSIGYLSQFLAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPR 933
H +P
Sbjct: 75 ------------------------------------------------FQGSKTHGMLPG 86
Query: 934 LLEGTTYEFRVRAENLQG---LSEPI--TTKE 960
L + Y VR N +G S T E
Sbjct: 87 LEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118
Score = 32.0 bits (73), Expect = 0.66
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 486 DKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYII------EKMDISRGTWSD 537
D P P + V+ V ++ W VP+ + Y I +R
Sbjct: 12 DLPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 538 AGMTVS---LFYDVPRLIHRKEYLFRVKAVNSIGES 570
+T +P L Y V+ VN GE
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEG 106
Score = 29.7 bits (67), Expect = 4.5
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 18/112 (16%)
Query: 73 IPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMGD- 126
+P P ++ + + + + W + Y + + +
Sbjct: 13 LPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 127 ---VSGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 170
G+ T L Y V+ VN GE S V T +
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN---TPEGS 120
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A
{Branchiostoma floridae}
Length = 250
Score = 64.9 bits (157), Expect = 4e-11
Identities = 28/234 (11%), Positives = 50/234 (21%), Gaps = 75/234 (32%)
Query: 2107 EGQSVKFTCRVIAIA---TPTLTWFHNNQELKQSVKFMKRYAGD---------------- 2147
G +V+ C P ++W + + F Y
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 2148 -------------DYTFVINRTKMEDRGEYIIRAEN-----HYGYREEVVFLNVQRKYDL 2189
T + +D G Y + +G + V L V
Sbjct: 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS 135
Query: 2190 PVIHYKNHRRAN-----------------KYDVIWLHNNKEIKPSNDFAYSSVAHVH--- 2229
+H +V W + Y +A+ +
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 2230 ------------------TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
L I D+G CE +GE + + +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 58.8 bits (141), Expect = 4e-09
Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 29/229 (12%)
Query: 1318 QCKEQKRKPDPPEAPKVD--RITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDAN 1375
C Q P P + + + ++ G++ K
Sbjct: 23 PCSYQLANDTQP--PVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG 80
Query: 1376 SVPVPNPVH---TVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVI--VEEQPNKPVMDL 1430
V N + ++ + + + +E G + V+ V + +
Sbjct: 81 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV 140
Query: 1431 SGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLT----------- 1479
S + V G D ++ P W+ + ++ +T ++ L
Sbjct: 141 STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200
Query: 1480 ---------MNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
+ +LV++ ++ +D G+ +L G A +L
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 46.1 bits (108), Expect = 6e-05
Identities = 27/243 (11%), Positives = 58/243 (23%), Gaps = 40/243 (16%)
Query: 154 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD----HVDLEWTPPKKDGGSPISQYI 209
G ++ L C + P ++ W K + G +
Sbjct: 17 GGTVELPCSYQLANDTQ--------PPVIS-WLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 210 IEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 267
+ + AN+ A + + + + + E + V
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 268 KPRFVAPK---IKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVT 324
K P + + + + G + + VTW + + T
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE-NYETGTYQ 186
Query: 325 SIGYHTIVNTV---------------------NTKRSDSGTYHLELRNTSGRDEGSFTVT 363
+ K +D+G EL G + + T
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 364 VLE 366
+L+
Sbjct: 247 ILK 249
Score = 39.5 bits (91), Expect = 0.008
Identities = 29/240 (12%), Positives = 53/240 (22%), Gaps = 67/240 (27%)
Query: 1944 TGDHRNRTNSINQKNLIKMRDRIRSKYEGWDECVLPLGRLSQYSSLRKLQIDRFSIQDTS 2003
GD R + N + + G C +++Q+S + +D S+
Sbjct: 75 FGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC-----QVAQWSIRTEFGLDAKSVVLKV 129
Query: 2004 FDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAG 2063
+ V + EG + TC A +TW+
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTG---------------- 173
Query: 2064 DDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATP 2123
T F+ + + ++ F S + R
Sbjct: 174 --------------------PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR 213
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
L I K+ D G G + +
Sbjct: 214 NLV--------------------------IRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 38.0 bits (87), Expect = 0.022
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWT-----IDGKELKTDSVRTTVTSIGY 743
+ + + + G + + VTW + E T G
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 744 HTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFT 776
+ + + S SG +L +R D G
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVW 229
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein interf
immune system; HET: NAG; 3.30A {Homo sapiens} SCOP:
b.1.1.3 b.1.1.4
Length = 291
Score = 64.5 bits (156), Expect = 7e-11
Identities = 40/285 (14%), Positives = 74/285 (25%), Gaps = 40/285 (14%)
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH--NNQELKQSVKFMKRYAGDDYTFYSSL 2072
+ P G SV TC L +EL K Y + S
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQP 63
Query: 2073 R-KLQIDRFSIQDTSFDRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIA---IATPTLTW 2127
+F P V + P ++ G+++ C+V A T+
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123
Query: 2128 FHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKY 2187
+ELK+ + T + + + R E + +F N Y
Sbjct: 124 LRGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180
Query: 2188 DLPVIHY-------------------------KNHRRANKYDVIWLHNNKEIKPSNDFAY 2222
L ++ V ++ + P+ +
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN 240
Query: 2223 SSVAHVHTLKIAEIFPEDSGVY--TCEAFNDEGESFSSCTLLVQV 2265
S + ++ + ED G TC + T+ +
Sbjct: 241 DSFSAKASVSVTA---EDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 46.8 bits (110), Expect = 4e-05
Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 30/208 (14%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELKQSVKFMKRYAG---- 2063
R + P ++ G+++ C+V A T+ +ELK+ +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146
Query: 2064 -----DDYTFYS-------SLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSV 2111
+S + L++ +
Sbjct: 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206
Query: 2112 KFTCRVIAI---ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRT-KMEDRGEYIIR 2167
C + + + + +Q L +V Y D ++ + + ED G +
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVT----YGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 2168 AENHYG--YREEVVFLNVQRKYDLPVIH 2193
G +E + + + P +
Sbjct: 263 CAVILGNQSQETLQTVTIYSFP-APNVI 289
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity,
immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S
3chn_J 3cm9_J
Length = 585
Score = 66.6 bits (161), Expect = 7e-11
Identities = 38/316 (12%), Positives = 73/316 (23%), Gaps = 60/316 (18%)
Query: 2025 GQSVKFTCRVIAIATPTLTWFHNNQE-LKQSVKFMKRYAGDDYTFYSSLRKLQID----- 2078
KF CR + + + + + D +F + L+ +
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 2079 -----------RFSIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTW 2127
S P G SV C + ++ +
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 2128 F-----------------HNNQELKQSVKFMKRYAGDDYTF--VINRTKMEDRGEYIIRA 2168
+ + + + + TF ++N+ D G Y
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425
Query: 2169 ENHYGYREEVVFLNVQRKY----------------DLPVIHYKNHRRANKYDVIWLHNNK 2212
+R V ++ + +P KY W +
Sbjct: 426 NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC 485
Query: 2213 EIKPSNDFAYSSVAHVH-------TLKIAEIFPEDSGVYTCEAFND-EGESFSSCTLLVQ 2264
+ PS D S +L + + D G Y C ++ + V+
Sbjct: 486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Query: 2265 VSWYKDGNPVSDDPAT 2280
VS A
Sbjct: 546 ERKAAGSRDVSLAKAD 561
Score = 56.2 bits (134), Expect = 1e-07
Identities = 41/333 (12%), Positives = 79/333 (23%), Gaps = 71/333 (21%)
Query: 2014 VIKPQSAFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELKQSV--------------K 2056
+ P+ EG SV TC W +
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 2057 FMKRYAGDDYTFYSSLRKLQID------------RFSIQDTSFDRRQAAPRFVIKPQSAF 2104
++ TF ++ +L D + P + +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 2105 CYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD---------------- 2148
G++V C + L + +
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183
Query: 2149 -YTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPV---------------I 2192
++ VIN+ ++ D G+Y+ +A + ++ L V + V
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGP 243
Query: 2193 HYKNHRR-------ANKYDVIWLHNNKEIKPSND---FAYSSVAHVHTLKIAEIFPEDSG 2242
N + DV+ K ++ I + ED+G
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303
Query: 2243 VYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVS 2275
Y C A +D S Q+ ++
Sbjct: 304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Score = 53.1 bits (126), Expect = 1e-06
Identities = 55/445 (12%), Positives = 96/445 (21%), Gaps = 122/445 (27%)
Query: 1998 SIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHN-NQELKQSVK 2056
+ P + + G++V C + V
Sbjct: 100 GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVI 159
Query: 2057 FMKRYAGDDYTFYSSLR---------KLQIDRFSIQDT----------SFDRRQAAPRFV 2097
Y +YT L + I++ + D S ++ A V
Sbjct: 160 DSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV 219
Query: 2098 IKPQSAFCY--EGQSV--------------KFTCRVIAIATPTLTWFHNNQELKQS---V 2138
+KP+ Y SV KF CR + + + +
Sbjct: 220 LKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI 279
Query: 2139 KFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR 2198
+ ++ VI + ED G Y+ A + +E Q + ++
Sbjct: 280 LLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339
Query: 2199 RANK------------------YDVIWLHNNKEIKPSNDFAYSSVAHVH----------- 2229
W S V
Sbjct: 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399
Query: 2230 -------TLKIAEIFPEDSGVYTCEAFNDEGESFS------------------------- 2257
T+ + ++ D+G Y C D +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459
Query: 2258 ---SCTLLVQVS--------WYKDGNP--VSDDPATYQFTQI----GQTYKMKILSTTLD 2300
C + S W G S D + + + + T
Sbjct: 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519
Query: 2301 DVGQY-----SAQMGGIIAAFSLNV 2320
D G Y G AA + V
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAV 544
Score = 44.2 bits (103), Expect = 5e-04
Identities = 30/235 (12%), Positives = 58/235 (24%), Gaps = 49/235 (20%)
Query: 2097 VIKPQSAFCYEGQSVKFTCRV---IAIATPTLTWFHNNQELKQSV--------------K 2139
+ P+ EG SV TC W +
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 2140 FMKRYAGDDYTFV--INRTKMEDRGEYIIRAENHYG------YREEVVFLNVQRKYDLPV 2191
++ TFV I + +D G Y + E + +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 2192 IHYKNH-------RRANKYDVIWLHNNKEIKP--------SNDFAYSSVAHVH------- 2229
+ + N L+ + P + Y+ +
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183
Query: 2230 --TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQ 2282
++ I ++ D+G Y C+A +D + + L V + T+
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFH 238
Score = 43.8 bits (102), Expect = 7e-04
Identities = 26/212 (12%), Positives = 54/212 (25%), Gaps = 40/212 (18%)
Query: 2013 FVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWF-----------------HNNQELKQSV 2055
P G SV C + ++ ++ + +
Sbjct: 334 IPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG 393
Query: 2056 KFMKRYAGDDYTFYSSLRKLQID-----------RFSIQDTSFDRRQAAPRFVIKPQSAF 2104
+ + TF L +L + T + + P +
Sbjct: 394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT 453
Query: 2105 CYEGQSVKFTCRVIAIAT----PTLTWFHNN------QELKQSVKFMKRYAGDD-YTFVI 2153
G+++K C + W + Q+ S F+ + +
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTL 513
Query: 2154 NRTKMEDRGEYIIRAENHYGYREEV-VFLNVQ 2184
N D G Y + + Y E V++ V+
Sbjct: 514 NLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 36.5 bits (83), Expect = 0.12
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIG--YHTIVNTVNTKRSDSGTYHLELRNTSGRD 356
+V GK R + V ++ D+G Y +
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 357 EGSFTVTVLETISKTNTTTISSKNM 381
EGS +++ +T S +
Sbjct: 317 EGSPIQAWQLFVNEESTIPRSPTVV 341
Score = 36.5 bits (83), Expect = 0.13
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIG--YHTIVNTVNTKRSDSGTYHLELRNTSGRD 771
+V GK R + V ++ D+G Y +
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 772 EGSFTIVPDHLKNLWNTKKSLHPVLH 797
EGS N +T V+
Sbjct: 317 EGSPIQAWQLFVNEESTIPRSPTVVK 342
Score = 33.4 bits (75), Expect = 1.1
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 1484 SLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTP 1543
S+V+ + SD GQY Q + + + ++VL E S+T +
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY----EDLRGSVTFHCAL 241
Query: 1544 PRDNGGSEITNYVVEKKDYNSTVWTK 1569
+ + V
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNT 267
Score = 33.4 bits (75), Expect = 1.1
Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 9/169 (5%)
Query: 615 GGSPITDYIIQKKEKGNPYWMNALEVPANKTD----VKIPDLTKGQEYEFRVIAVNEAGP 670
D ++ K P + + + D V I L K + A ++
Sbjct: 256 SSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQL 315
Query: 671 SEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELK 730
E S + I + AG + V + + + + + +
Sbjct: 316 QEGSPIQAWQLFVNEE--STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373
Query: 731 TDSVRTTVTSIGYHTIVNTVNTKRSD---SGTYHLELRNTSGRDEGSFT 776
V S G+ + +GT+ + L + RD G +
Sbjct: 374 NGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Score = 31.9 bits (71), Expect = 3.2
Identities = 32/265 (12%), Positives = 70/265 (26%), Gaps = 33/265 (12%)
Query: 1404 EAGNSE-PGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFW-- 1460
A + + S + N+ + AG ++ P+ + +
Sbjct: 308 GAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWC 367
Query: 1461 ------FANDSIIDDSDTRVHKQL----------TMNSASLVVKNSQRSDGGQYRLQLKN 1504
++ DS+ V Q + ++++ D G Y
Sbjct: 368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNG 427
Query: 1505 PAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEIT---------NY 1555
+ T + P+ + G++L + P E
Sbjct: 428 DTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQA 487
Query: 1556 VVEKKDYNSTVWTKVSSYVTTPFVRVRNLAI---GSTYEFRVMAENQYGLSKPA-LTIDP 1611
+ + + S + + + + G Y V + YG + + ++
Sbjct: 488 LPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG-WYWCGVKQGHFYGETAAVYVAVEE 546
Query: 1612 IKAKHPFDVPGAPGAPKGVDSTEDS 1636
KA DV A + DS
Sbjct: 547 RKAAGSRDVSLAKADAAPDEKVLDS 571
Score = 31.9 bits (71), Expect = 3.5
Identities = 24/206 (11%), Positives = 55/206 (26%), Gaps = 23/206 (11%)
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKIL 706
V I L++ ++ + + + P + K + G+ +
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFD------VSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 707 NVEIQFIGEPPPEVTW-------------TIDGKELKTDSVRTTVTSIGYHTIVNTV--- 750
+ F E + G + R + G ++ +V
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 751 NTKRSDSGTYHLELRNTSGRDEGSFTIVPDHLKNLWNTKKSLHPV-LHCRGNHLPIMEAV 809
+ SD+G Y + + S ++ + + + + V HC A
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAK 250
Query: 810 KSRKPDPPEAPKVDRITKDSVTLSWR 835
+ E V T ++
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFE 276
Score = 31.1 bits (69), Expect = 5.6
Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 20/172 (11%)
Query: 1430 LSGVRDITVKAGEDFSIH---VPFMAFPQPAAFWF-------------ANDSIIDDSDTR 1473
+ G ++ G SI P +W + + R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 1474 VHKQLTMNSASLVVK--NSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADE 1531
+ + + VV + D G+Y+ L + + + + V P +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 1532 FAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV-RVR 1582
T+ P ++ + ++ + S YV + R+R
Sbjct: 124 -VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Score = 30.7 bits (68), Expect = 6.7
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 267 CKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTW-------------TIDGKE 313
P + K + G+ + + F E + G
Sbjct: 106 SLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYV 165
Query: 314 LKTDSVRTTVTSIGYHTIVNTV---NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISK 370
+ R + G ++ +V + SD+G Y + + S ++ + + VL+ +
Sbjct: 166 NPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPE 225
Query: 371 TNTTTI 376
+
Sbjct: 226 LVYEDL 231
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered
beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum
pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 64.9 bits (159), Expect = 9e-11
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 1696 IGTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF 1754
IG G FG V++ + G A K P S +E EI+ ++ HP L++L
Sbjct: 47 IGHGVFGKVYKGV-LRDGAKVALKRRTPESSQGIEEF-ETEIETLSFCRHPHLVSLIGFC 104
Query: 1755 EDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVK---HMHEKNIIHLD 1811
++ +EM+LI++++ G L + D + A + ++H + IIH D
Sbjct: 105 DERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRD 164
Query: 1812 VKPENIMCQTRNSTNVKMIDFGLATKLDPN-EVVKIST---GTAEFAAPE 1857
VK NI+ + K+ DFG++ K + +ST GT + PE
Sbjct: 165 VKSINILLD--ENFVPKITDFGIS-KKGTELDQTHLSTVVKGTLGYIDPE 211
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 59.3 bits (144), Expect = 1e-10
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 1225 PPDAPSQPEVTGYSPS-SVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLN 1283
P P+ S + +L WN Y V++ + G T+ N
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNITSTN 58
Query: 1284 FTVHDLREGGKYEFRVIAINEAGPGKPS 1311
+T + G KY + V A++ S
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 55.9 bits (135), Expect = 2e-09
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
P+ P G V D + + +L+W +Y V++ + G ++ +++ + S Y
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEP 1127
G+ T +Y + V A + +
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 53.2 bits (128), Expect = 2e-08
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 1328 PPEAPK----VDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPV 1383
P P V + ++ L+W Y V++ K G + + +
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN 58
Query: 1384 HTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+T ++ G +Y + V AV+ + S I+
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLN---SAEAIL 91
Score = 52.8 bits (127), Expect = 3e-08
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 1517 VLDRPHPPENLHADEFAGD-SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVT 1575
++ P P L A + + L W +Y V++ + +T +++ +T
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNIT 55
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQYGLSKP 1605
+ +A G+ Y + V A + +
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 46.2 bits (110), Expect = 5e-06
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYT 132
P+ P G + + ++ NL W A Y V++ G + + +++ T
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 133 RAENLIEGHDYNFRVKAVNKIGESLP 158
+ G Y + V AV+ E+L
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 44.7 bits (106), Expect = 2e-05
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 588 PDAPEKPT-VKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTD 646
P P + V D + +L W Y +++ K + + T+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPY-TTIATNITSTN 58
Query: 647 VKIPDLTKGQEYEFRVIAVNEAGPSEPSDAS 677
+ G +Y + V AV+ + S +
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNSAEA 89
Score = 43.9 bits (104), Expect = 3e-05
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 177 PGQPT----VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKACIVPANITA 231
P PT V D + +L W + Y +++ GP+ + NIT+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTT---IATNITS 56
Query: 232 TSVPD--LKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
T+ D + G +Y + V AV+ G S +
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 41.2 bits (97), Expect = 3e-04
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVS-LFY 546
P+ P G V + + + L+W Y +++ S G ++ ++ Y
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAAPGANS-----YNVKRSTKSGGPYTTIATNITSTNY 59
Query: 547 DVPRLIHRKEYLFRVKAVNSIGESD 571
+ +Y + V AV++ E+
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETL 84
Score = 40.1 bits (94), Expect = 8e-04
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 1896 VKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPSSTS 1931
+ Y + G Y + V A + + S+ +
Sbjct: 54 ITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEA 89
Score = 36.6 bits (85), Expect = 0.011
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 901 GYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGLSEP 955
Y ++ R GG + +++ + T + GT Y + V A + +
Sbjct: 34 SYNVK-RSTKSGGPYTTIATNIT--STNYTDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 31.6 bits (72), Expect = 0.79
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 429 YIIEMAEYGLDNWKTVPGFCPKEFFTVKGLTEGKKYVFRIRTENMYGASEP 479
Y ++ + + T+ +T G+ G KY + + + +
Sbjct: 35 YNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLN 85
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 59.4 bits (144), Expect = 2e-10
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 2086 SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMK--R 2143
S + PR V P +G+ C+ TPT+ W+ + ++ + R
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 2144 YAGDDYTFVI-----NRTKMEDRGEYIIRAENHYG 2173
+ R D G Y+ A N+ G
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 49.8 bits (119), Expect = 4e-07
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 268 KPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS----VRTTV 323
+ P+I D+I+ G+ + + G P P + W G+ ++TD +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 324 TSIG--YHTIVNTVNTKRSDSGTYHLELRNTSG 354
G + + R D G Y RN G
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 49.4 bits (118), Expect = 5e-07
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 683 KQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDS----VRTTV 738
+Q P+I D+I+ G+ + + G P P + W G+ ++TD +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 739 TSIG--YHTIVNTVNTKRSDSGTYHLELRNTSG 769
G + + R D G Y RN G
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 48.7 bits (116), Expect = 1e-06
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 2003 SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY 2061
S + PR V P +G+ C+ TPT+ W+ + ++ + +
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Score = 46.7 bits (111), Expect = 5e-06
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVA-------HVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
+ W + ++ D S + D GVY C A N GE+
Sbjct: 40 TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Query: 2257 S-SCTLLVQVS 2266
S +L V +
Sbjct: 100 SHDASLEVAAA 110
Score = 35.9 bits (83), Expect = 0.030
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 20/112 (17%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII--DDSDTR 1473
P IVE P D+ V GE +++ P P W+ + D D R
Sbjct: 10 PRIVEH----P-------SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 1474 VHKQLTMNSA----SLVVKNSQRSDGGQYRLQLKNPAGFD---TATLHVRVL 1518
H+ L + + +V R D G Y +N G A+L V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP:
b.1.1.1 b.1.1.3
Length = 176
Score = 61.1 bits (148), Expect = 2e-10
Identities = 16/174 (9%), Positives = 48/174 (27%), Gaps = 30/174 (17%)
Query: 2107 EGQSVKFTCRVIAIA--TPTLTWFHNNQELKQSVKFMKRYAGD-------DYTFVINRTK 2157
G + + + W + + + + MK + + I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQRKYDL--PVIHYKN--------HRRANKYDVIW 2207
+D G Y + + G R L+++ + P+I+++ ++
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKL 129
Query: 2208 LHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+ ++ ++ + + C+A N + +
Sbjct: 130 YQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Score = 50.0 bits (119), Expect = 1e-06
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 37/181 (20%)
Query: 2024 EGQSVKFTCRVIAIA--TPTLTWFHNNQELKQSVKFMKRYAGDD-YTFYSSLRKLQIDRF 2080
G + + + W + + + + MK + + ++ L+I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD-LKIKNL 68
Query: 2081 SIQDT------------------SFDRRQAAPRFVIKPQSAFCYEGQSVKFTCRVIAIAT 2122
+ D+ + D R V KP + E + TC V+
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALDLRILEM--VSKPMIYW--ECSNATLTCEVLEGTD 124
Query: 2123 PTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLN 2182
L + + L+ ++ R + +A N E+ +N
Sbjct: 125 VELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 173
Query: 2183 V 2183
Sbjct: 174 C 174
Score = 48.0 bits (114), Expect = 6e-06
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 40/135 (29%)
Query: 2197 HRRANKYDVIWLHNNKEI----KPSNDFAYSSVAHVH---TLKIAEIFPEDSGVYTCEAF 2249
+ +V W + + + F S + LKI + +DSG Y +
Sbjct: 22 QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVY 81
Query: 2250 NDEGESFSSCTLLVQ------------------------------VSWYKDGNPVSDDPA 2279
+ G + L ++ + Y+ +
Sbjct: 82 STNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ 141
Query: 2280 ---TYQFTQIGQTYK 2291
+YQ+T + +K
Sbjct: 142 KTMSYQWTNLRAPFK 156
Score = 44.2 bits (104), Expect = 1e-04
Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 23/169 (13%)
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAA--FWFANDSII------DDSDTRVHKQLTMNSASLVV 1487
+ G ++++P W +++ + + + L +
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDT--ATLHVRVLDRPHPPE--------NLHADEFAGDSL 1537
KN R D G Y + + + G L +R+L+ P L + G +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 1538 TLYW----TPPRDNGGSEITNYVVEKKD-YNSTVWTKVSSYVTTPFVRV 1581
L R ++ + + +VS V
Sbjct: 126 ELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 41.9 bits (98), Expect = 6e-04
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 291 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI-GYHTIVNTV-----NTKRSDSGT 344
LN+ + + EV W + + G I+ N R DSGT
Sbjct: 16 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75
Query: 345 YHLELRNTSGRD--EGSFTVTVLETISKTNTTTISS 378
Y++ + +T+G + + +LE +SK S
Sbjct: 76 YNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECS 111
Score = 36.9 bits (85), Expect = 0.037
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 706 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI-GYHTIVNTV-----NTKRSDSGT 759
LN+ + + EV W + + G I+ N R DSGT
Sbjct: 16 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75
Query: 760 YHLELRNTSGRDEGSFTI 777
Y++ + +T+G + +
Sbjct: 76 YNVTVYSTNGTRILNKAL 93
Score = 34.2 bits (78), Expect = 0.25
Identities = 11/120 (9%), Positives = 27/120 (22%), Gaps = 21/120 (17%)
Query: 245 FRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 304
+ V + G + + P I + L E+ E
Sbjct: 76 YNVTVYSTNGT-RILNKALDLRILEMVSKPMIYWECSNAT------LTCEVL--EGTDVE 126
Query: 305 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ + L++ +T + + + N ++ V
Sbjct: 127 LKLYQGKEHLRSLRQKT------------MSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 33.8 bits (77), Expect = 0.34
Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 30/182 (16%)
Query: 600 GEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYE 659
+D ++ W+ G + + ++ K++ A E+ AN +KI +LT+
Sbjct: 24 TDDIDEVRWER----GSTLVAEF---KRKMKPFLKSGAFEILANGD-LKIKNLTRDDSGT 75
Query: 660 FRVIAVNEAGPSEPSDASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE 719
+ V + G + + + + P I + L E+ E
Sbjct: 76 YNVTVYSTNGTRI-LNKALDLRILEMVSKPMIYWECSNAT------LTCEVL--EGTDVE 126
Query: 720 VTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI-V 778
+ + L++ +T + + + N ++ +
Sbjct: 127 LKLYQGKEHLRSLRQKT------------MSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Query: 779 PD 780
P+
Sbjct: 175 PE 176
Score = 30.3 bits (68), Expect = 4.7
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKM------KILSTTLDDVGQYSAQM 2309
+V W + V++ + +++ KI + T DD G Y+ +
Sbjct: 29 EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 80
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor
tyrosine kinase mertk, FN3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 59.4 bits (144), Expect = 2e-10
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 1225 PPDAPSQP--EVTGY---SPSSVSLAWNPPANHGGR-PITGYYVE--KRERGGEWLRANN 1276
APS VT + S +V + W P + GY + + G
Sbjct: 14 TEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEE 73
Query: 1277 YPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIV 1317
+ R+ A+ G G S P I
Sbjct: 74 VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIF 114
Score = 54.0 bits (130), Expect = 2e-08
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 586 DEPD-APEKPTVKDWG-EDFVDLAWKPP-LNDGGSPITDYIIQKKEKGNPYWMNALE-VP 641
P AP TV D VD+ W P + Y I + LE V
Sbjct: 16 GAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75
Query: 642 ANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIM 681
N + +I R+ AV G SD I +
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI 115
Score = 53.3 bits (128), Expect = 3e-08
Identities = 25/120 (20%), Positives = 35/120 (29%), Gaps = 13/120 (10%)
Query: 1306 GPGKPSKPTDIVQCKEQKRKPD-PPEAPKVDR-ITKDSVTLSWRPP--KHDGGARIKGYI 1361
G S + E P P V + D+V + W P K G + GY
Sbjct: 1 GSSGSSGWI-LASTTEGA--PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG-ELVGYR 56
Query: 1362 VQ--KRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIV 1419
+ + G V + T R+ AV G G S PV +
Sbjct: 57 ISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKI 113
Score = 47.5 bits (113), Expect = 3e-06
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 1040 DKPS-PPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
PS P + + ++ + W P + Y + + G +L V
Sbjct: 16 GAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75
Query: 1098 SPA--YDVFGLETNRQYRFRVRAENQYGV---SEPLEL 1130
+ N R+ A + GV S+P+++
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113
Score = 44.8 bits (106), Expect = 2e-05
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 1523 PPENLHADEFAG-DSLTLYWTPP---RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP- 1577
P N+ D++ + W P + +G E+ Y + ++ + ++ V
Sbjct: 21 APLNVTVFLNESSDNVDIRWMKPPTKQQDG--ELVGYRISHVWQSAGISKELLEEVGQNG 78
Query: 1578 -FVRVRNLAIGSTYEFRVMAENQYG 1601
R+ +T R+ A + G
Sbjct: 79 SRARISVQVHNATCTVRIAAVTRGG 103
Score = 43.6 bits (103), Expect = 6e-05
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 190 VDLEWTPP-KKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYEFR 246
VD+ W P K + Y I + K V N + + R
Sbjct: 36 VDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVR 95
Query: 247 VIAVNKGGPGEPSKASAPVTC 267
+ AV +GG G S PV
Sbjct: 96 IAAVTRGGVGPF---SDPVKI 113
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 475 GASEPLDPLF----PDKPS-PPEGPLEVSNVTKESCKLSWR-VPVDDGGAPILHYIIEKM 528
G+S + PS P N + ++ + W P ++ Y I +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 529 DISRGTWSDAGMTV---SLFYDVPRLIHRKEYLFRVKAVNSIGE 569
S G + V + +H R+ AV G
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGV 104
Score = 37.5 bits (87), Expect = 0.009
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 74 PS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMGDVS 128
PS P N + + ++ W P +++ Y + + + + +
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQN 77
Query: 129 GTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSP 164
G+ R + R+ AV + G S P+ P
Sbjct: 78 GSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116
Score = 35.9 bits (83), Expect = 0.029
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 884 LAEEKKHGKLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFR 943
+++ G+L+ GY I + G + V A + + T R
Sbjct: 43 PPTKQQDGELV------GYRISHVWQSAGISKE-LLEEVGQNGSRARISVQVHNATCTVR 95
Query: 944 VRAENLQG---LSEPITTKEP 961
+ A G S+P+ P
Sbjct: 96 IAAVTRGGVGPFSDPVKIFIP 116
Score = 29.0 bits (65), Expect = 7.3
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 4/63 (6%)
Query: 816 PPEAPKVDR-ITKDSVTLSWRPP--KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVH 872
P V + D+V + W P K G + GY + + V
Sbjct: 21 APLNVTVFLNESSDNVDIRWMKPPTKQQDG-ELVGYRISHVWQSAGISKELLEEVGQNGS 79
Query: 873 TLL 875
Sbjct: 80 RAR 82
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 63.4 bits (153), Expect = 3e-10
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 54/200 (27%)
Query: 1688 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV--------SHNLEKELIRKEIDIM 1739
+ E+IG G FG V + A K I + SH E I EI I
Sbjct: 20 EKLQRCEKIGEGVFGEVFQTI--ADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS 77
Query: 1740 NQLH---------HPKLINLHDAF------------------------------EDDDEM 1760
+L I L+ DD++
Sbjct: 78 KELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQL 137
Query: 1761 VLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEK-NIIHLDVKPENIMC 1819
++ EF GG E++ S A + + Q+ ++ H D+ N++
Sbjct: 138 FIVLEFEFGGIDLEQMRTK--LSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVL- 194
Query: 1820 QTRNSTNVKMIDFGLATKLD 1839
+ ++ K+
Sbjct: 195 -LKKTSLKKLHYTLNGKSST 213
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK,
transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB:
2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Length = 307
Score = 62.6 bits (153), Expect = 3e-10
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 1696 IGTGAFGVVHRCRERKTGNIFAAK-----FIPVSHNLEKELIRKEIDIMNQLHHPKLINL 1750
+G G FGVV++ A K + L+++ + EI +M + H L+ L
Sbjct: 39 MGEGGFGVVYKGYVN--NTTVAVKKLAAMVDITTEELKQQFDQ-EIKVMAKCQHENLVEL 95
Query: 1751 HDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINY---MRQVCEAVK---HMHE 1804
D D++ L++ ++ G L +R+ + +++ + A +HE
Sbjct: 96 LGFSSDGDDLCLVYVYMPNGSLLDRL----SCLDGTPPLSWHMRCKIAQGAANGINFLHE 151
Query: 1805 KNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GTAEFAAPE 1857
+ IH D+K NI+ + K+ DFGLA + +++ GT + APE
Sbjct: 152 NHHIHRDIKSANILLD--EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPE 205
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 59.0 bits (142), Expect = 3e-10
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 1222 PFDPPDAPSQPEV-TGYSPSSVSLAWNPPAN-----HGGRPITGYYVEKRERGGEWLRAN 1275
P PP P V G +P+++ ++W PP G +TGY V + G+ +
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK---GQRVAEV 70
Query: 1276 NYPTTN-LNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
+PT + + LR V ++ G S + P P
Sbjct: 71 IFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPS 125
Score = 49.4 bits (117), Expect = 7e-07
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 15/119 (12%)
Query: 1039 TDKPSPPQGPLDVS---DITPESCSLSWKPPLDD-----GGSPITNYVVEKYESATGFWS 1090
T PP P DV+ +TP + +SW+PP+ G+ +T Y V Y
Sbjct: 12 TLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV--YAKGQRVAE 69
Query: 1091 KLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQP 1149
+ S A ++ L + VR + G S S A P + PP
Sbjct: 70 VIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVD-----SAVAAVPPELLVPPTPH 123
Score = 46.7 bits (110), Expect = 7e-06
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 1326 PDPPEAPKVDRITKD-SVTLSWRPPKHD-----GGARIKGYIVQKRKKGGDWVDANSVPV 1379
P PP+ V ++ +SWRPP GA + GY V + + V
Sbjct: 18 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ-----RVAEVIF 72
Query: 1380 PNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKP 1426
P T L + + V S V + P
Sbjct: 73 PTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVP 119
Score = 36.3 bits (83), Expect = 0.026
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 489 SPPEGPLEVS---NVTKESCKLSWRVPVDD-----GGAPILHYIIEKMDISRGTWSDAGM 540
PP P +V+ VT + ++SWR PV GA + Y +
Sbjct: 16 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTA 75
Query: 541 TVSLFYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKP 594
S ++ RL + V+ +++ GES + E P P
Sbjct: 76 D-STAVELVRLRSLEAKGVTVRTLSAQGES---VDSAVAAVPPELLVPPTPHPS 125
Score = 35.1 bits (80), Expect = 0.065
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 814 PDPPEAPKVDRITKD-SVTLSWRPPKHD-----GGARIKGYIVQKRKKGGDWVDANSVPV 867
P PP+ V ++ +SWRPP GA + GY V + + V
Sbjct: 18 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ-----RVAEVIF 72
Query: 868 PNPVHTLLSIGYL 880
P T + + L
Sbjct: 73 PTADSTAVELVRL 85
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 57.9 bits (140), Expect = 3e-10
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 268 KPRFVAP-KIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSI 326
P P + ++ +++ G +L + + + + + W DG +L + RT +T
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCR-LRDDVQSINWLRDGVQLVESN-RTRITG- 59
Query: 327 GYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
+ ++ +DSG Y + SG D F+V V
Sbjct: 60 EEVEVRDS---IPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 56.3 bits (136), Expect = 1e-09
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI 2153
++ +S + G ++ CR+ ++ W + +L +S R +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVES----NRTRITGEEVEV 64
Query: 2154 NRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
+ D G Y + G +NV
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 55.2 bits (133), Expect = 3e-09
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
+ WL + ++ SN + +++ + P DSG+Y C + G + ++ V
Sbjct: 40 INWLRDGVQLVESNRTRITG----EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 50.6 bits (121), Expect = 1e-07
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 748
+ ++ +++ G +L + + + + + W DG +L + RT +T +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCR-LRDDVQSINWLRDGVQLVESN-RTRITG-EEVEV-- 64
Query: 749 TVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
++ +DSG Y + SG D F++
Sbjct: 65 -RDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 42.1 bits (99), Expect = 1e-04
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1421 EQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTM 1480
+ +P V + V G+ + + W + + +S+ R +
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN-RTR----I 57
Query: 1481 NSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
+ V++S +D G Y +P+G DT V V
Sbjct: 58 TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 38.6 bits (90), Expect = 0.002
Identities = 8/75 (10%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
++ +S + G ++ CR+ ++ W + +L +S +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG--------- 59
Query: 2071 SLRKLQIDRFSIQDT 2085
++++ D+
Sbjct: 60 --EEVEVRDSIPADS 72
Score = 35.2 bits (81), Expect = 0.034
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYKMKILSTTLDDVGQY----SAQMGGIIAAFSLN 2319
++W +DG + + T+I +++ + D G Y S+ G FS+N
Sbjct: 39 SINWLRDGVQLVESNR----TRITGEE-VEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Query: 2320 V 2320
V
Sbjct: 94 V 94
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein;
immunoglobulin-like domain, extracellular matrix; HET:
EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 57.5 bits (139), Expect = 5e-10
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 2091 QAAPRFVI--KPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQSVKFMKRYAGD 2147
+ P V + +S G V F C + + TL W + S R
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-----RAMDF 60
Query: 2148 DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ I + D G Y+ N + + L+VQ
Sbjct: 61 NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 51.0 bits (122), Expect = 1e-07
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
++W + PS ++ L I + P D+G Y C N + TL VQ
Sbjct: 43 LVWTRLHNGKLPSR-----AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Query: 2265 V 2265
V
Sbjct: 98 V 98
Score = 46.7 bits (111), Expect = 3e-06
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIH-VPFMAFPQPAAFWFANDSIIDDSDTRV 1474
P+ +P ++ + R +V+ G D + P W + S
Sbjct: 2 PLAAPSKP--IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD 59
Query: 1475 HKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHVRV 1517
+ L ++N Q SD G Y N D TATLHV+V
Sbjct: 60 ------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 42.5 bits (100), Expect = 1e-04
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 261 ASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWT-IDGKELKT 316
A KP V + ++ G +V P + WT + +L +
Sbjct: 1 APLAAPSKPIMV---TVEEQRSQSVRPGA--DVTFICTAKSKSPAYTLVWTRLHNGKLPS 55
Query: 317 DSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
++ G TI N + SD+GTY N D+G+ T+ V
Sbjct: 56 RAMDFN----GILTI---RNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 36.3 bits (84), Expect = 0.015
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 691 IKTPLKDIIIKAGKILNVEIQ---FIGEPPPEVTWT-IDGKELKTDSVRTTVTSIGYHTI 746
+ ++ G +V P + WT + +L + ++ G TI
Sbjct: 13 TVEEQRSQSVRPGA--DVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN----GILTI 66
Query: 747 VNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
N + SD+GTY N D+G+ T+
Sbjct: 67 ---RNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 31.7 bits (72), Expect = 0.55
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 2008 QAAPRFVI--KPQSAFCYEGQSVKFTCRVIAIA-TPTLTWFHNNQELKQS 2054
+ P V + +S G V F C + + TL W + S
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS 55
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 56.7 bits (136), Expect = 9e-10
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 170 PFGRPDRPGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPK--YGPWEKACIV 225
P G P + +T+ + ++W P+ S IS+YI+ +PK G W++A +
Sbjct: 2 PLGSS-GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TI 56
Query: 226 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 266
P ++ + ++ LK G YE ++I++ + G E ++ T
Sbjct: 57 PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTT 97
Score = 43.3 bits (101), Expect = 5e-05
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 602 DFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFR 661
+ + W P S I+ YI++ + K + +P + I L G YE +
Sbjct: 21 NSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQ 77
Query: 662 VIAVNEAGPSE 672
+I++ + G E
Sbjct: 78 LISIQQYGHQE 88
Score = 41.7 bits (97), Expect = 2e-04
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 1225 PPDAPSQPEV----TGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGE--WLRANNYP 1278
P + EV T P+S + WN P I+ Y + R + W A P
Sbjct: 2 PLGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TIP 57
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSK 1312
++T+ L+ G YE ++I+I + G + ++
Sbjct: 58 GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 91
Score = 41.3 bits (96), Expect = 3e-04
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSFVRSPA 1100
P + + + P S + W P S I+ Y++ + +++ G W + + +
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNS 62
Query: 1101 YDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITA 1136
Y + GL+ Y ++ + QYG E D + T+
Sbjct: 63 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 98
Score = 37.1 bits (85), Expect = 0.009
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 1535 DSLTLYWTPPRDNGGSEITNYVVEKKDYNS-TVWTKVSSYVTTPFVRVRNLAIGSTYEFR 1593
+S + W P+ S I+ Y++ + NS W + + ++ L G YE +
Sbjct: 21 NSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQ 77
Query: 1594 VMAENQYG 1601
+++ QYG
Sbjct: 78 LISIQQYG 85
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B
3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 59.7 bits (144), Expect = 1e-09
Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 23/180 (12%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELK--QSVKFMKRY-------AGDDYTFVINRTK 2157
G SV C L + + + +R F I +
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY------------DV 2205
+ D G+Y + + + + V+ Y + +V
Sbjct: 76 VRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEV 135
Query: 2206 IWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
W + + S+ + V + + + P+ S ++C +N + +S +
Sbjct: 136 SWQNVSVPANTSHIRTPEGLYQVTS--VLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193
Score = 49.7 bits (118), Expect = 2e-06
Identities = 18/182 (9%), Positives = 40/182 (21%), Gaps = 26/182 (14%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQELK--QSVKFMKRYAGDDYTFYSSLRKLQIDRFS 2081
G SV C L + + + +R + I
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75
Query: 2082 IQD---------TSFDRRQA-------APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTL 2125
++D A I + V+ TC+ +
Sbjct: 76 VRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEV 135
Query: 2126 TWFHNNQELKQSVKFMKRYAGDDYTFVIN---RTKMEDRGEYIIRAENHYGYREEVVFLN 2182
+W + + S + + + R K + + N + ++
Sbjct: 136 SWQNVSVPANTSH-----IRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
Query: 2183 VQ 2184
Sbjct: 191 PL 192
Score = 47.7 bits (113), Expect = 1e-05
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 17/140 (12%)
Query: 1436 ITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSD--------TRVHKQLTMNSASLVV 1487
TV G S+ F ++D T + +QL + A +
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 1488 KNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTL----YWTP 1543
+ Q D GQYR + A +D L V+V + + + L P
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP 131
Query: 1544 P-----RDNGGSEITNYVVE 1558
++ T+++
Sbjct: 132 LAEVSWQNVSVPANTSHIRT 151
Score = 43.9 bits (103), Expect = 2e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
G P EV+W T T G + + + + K S + N ++
Sbjct: 129 GYPLAEVSWQNVSVPANTSH---IRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Query: 359 SFTVTVLETISKTNTTT 375
S + L + T
Sbjct: 186 SAIIDPLSRMEPKVPRT 202
Score = 43.9 bits (103), Expect = 2e-04
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 773
G P EV+W T T G + + + + K S + N ++
Sbjct: 129 GYPLAEVSWQNVSVPANTSH---IRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Query: 774 SFTIVP 779
S I P
Sbjct: 186 SAIIDP 191
Score = 37.7 bits (87), Expect = 0.021
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 276 IKTPLKDIIIKAGKILNVEI--QFIGEPPPEVTWTIDGKELKTDSV-----RTTVTSIGY 328
+ P + + G +V + F E+ + + R T+
Sbjct: 5 VTAPKEVYTVDVGS--SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL 62
Query: 329 HTIVNTV---NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTT 374
+ + DSG Y + + D TV V + + +T
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR 111
Score = 35.4 bits (81), Expect = 0.11
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 12/98 (12%)
Query: 691 IKTPLKDIIIKAGKILNVEI--QFIGEPPPEVTWTIDGKELKTDSV-----RTTVTSIGY 743
+ P + + G +V + F E+ + + R T+
Sbjct: 5 VTAPKEVYTVDVGS--SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL 62
Query: 744 HTIVNTV---NTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + DSG Y + + D T+
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVK 100
Score = 35.0 bits (80), Expect = 0.15
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 2203 YDVIWLHNNKEIKPSNDFAYSSVAHV---------HTLKIAEIFPEDSGVYTCEAFNDEG 2253
++ + + + ++ S A + I + DSG Y C
Sbjct: 32 TELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA 91
Query: 2254 ESFSSCTLLVQVSWYK 2269
+ T+ V+ S+ +
Sbjct: 92 WDYKYLTVKVKASYMR 107
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
endoplasmic reticulum, hydrolase, membrane,
transmembrane; 1.96A {Saccharomyces cerevisiae}
Length = 505
Score = 62.2 bits (150), Expect = 1e-09
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 4 KRKDANVMWKLADIAQGAIGKTGLFCV-------SQGEAMSYQTGIVRVNCVDCLDRTNT 56
++ + + L D + F + E ++ Q +VR NC+DCLDRTN
Sbjct: 343 RKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRTNV 402
Query: 57 AQFAVGKCALALQ--WLHIPSPPE 78
Q + + L + + +
Sbjct: 403 VQSVLAQWVLQKEFESADVVATGS 426
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.4 bits (136), Expect = 2e-09
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQEL------KQSVKFMKRYA 2145
P + Q+ G+ + C + + P + W L + +V+ +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 2146 GDDYTFVINRTKMEDRG-EYIIRAENHYGYREEVVFLNVQ 2184
G T I+ D Y A N +G E++ L Q
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 51.8 bits (124), Expect = 1e-07
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAH------VHTLKIAEIFPED-SGVYTCEAFNDEGESFS 2257
+ W ++ Y+ + TL I+ I D +Y C A+N G
Sbjct: 46 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE 105
Query: 2258 SCTLLVQVS 2266
L Q S
Sbjct: 106 IIRLKEQGS 114
Score = 46.8 bits (111), Expect = 5e-06
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 272 VAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE-VTWTIDGKELKTDS-----VRTTVTS 325
P I + + G+ ++ PPP+ + W+ L++ + V T T
Sbjct: 13 GPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 326 IGYHTIVNTVNTKRSDSGT-YHLELRNTSGRDEGSFTVTV 364
G + + N R+D T Y+ N+ G D +
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 45.7 bits (108), Expect = 1e-05
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAA-FWFANDSIIDDSDT-----RVHKQLTMNSASLVV 1487
+ GE I + P P W +++++ + ++L +
Sbjct: 21 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 80
Query: 1488 KNSQRSD-GGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
N R+D Y N G DT + ++
Sbjct: 81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPE-VTWTIDGKELKTDS-----VRTTVTSI 741
P I + + G+ ++ PPP+ + W+ L++ + V T T
Sbjct: 14 PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 742 GYHTIVNTVNTKRSDSGT-YHLELRNTSGRDEGSFTIV 778
G + + N R+D T Y+ N+ G D +
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 39.1 bits (91), Expect = 0.002
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATP-TLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
P + Q+ G+ + C + + P + W L+ RY + +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG--RYTVETIST 70
Query: 2069 YSSLR-KLQIDRFSIQDTS 2086
+ L I D
Sbjct: 71 EEGVISTLTISNIVRADFQ 89
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo
sapiens}
Length = 206
Score = 57.4 bits (138), Expect = 6e-09
Identities = 20/184 (10%), Positives = 45/184 (24%), Gaps = 19/184 (10%)
Query: 1239 PSSVSLAWNPPANHG-----------GRPITGYYVEKRERGGEWLRANNYPTTNLNFTVH 1287
+ ++ W+ + + E
Sbjct: 15 LTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 1288 DLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDS-VTLSW 1346
+ Y + + G S PT ++ + KP PP + K + + +SW
Sbjct: 75 PIFLLSGYTMWIRINHSLGSLD-SPPTCVLP--DSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 1347 RPPKHDGGARIKGYIVQKRK--KGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNE 1404
P ++ + ++ K W + ++ Y +V
Sbjct: 132 EKP-VFPENNLQ-FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRL 189
Query: 1405 AGNS 1408
G
Sbjct: 190 DGLG 193
Score = 50.8 bits (121), Expect = 1e-06
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 8/128 (6%)
Query: 142 DYNFRVKAVNKIGESLPLVCQSPITAKDPFG--RPDRPGQPTVTD-WGKDHVDLEWTPPK 198
Y ++ + +G SP T P +P P + + W P
Sbjct: 81 GYTMWIRINHSLGSL-----DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPV 135
Query: 199 KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 258
+ Q K W+ + A + S+P Y +V G G
Sbjct: 136 FPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYW 195
Query: 259 SKASAPVT 266
S S P
Sbjct: 196 SNWSNPAY 203
Score = 49.3 bits (117), Expect = 3e-06
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 556 EYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKD-WGEDFVDLAWKPPLND 614
Y ++ +S+G +L++ T V + +P P + + ++W+ P+
Sbjct: 81 GYTMWIRINHSLG---SLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFP 137
Query: 615 GGSPITDYIIQKKEKGNPY-WMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEP 673
+ + I+ G W A V +P Y +V G
Sbjct: 138 ENNLQ--FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYW 195
Query: 674 SD 675
S+
Sbjct: 196 SN 197
Score = 46.2 bits (109), Expect = 3e-05
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 1209 WLQDSRIQGRIQSP---FDP-----PDAPSQPEVT-GYSPSSVSLAWNPPANHGGRPITG 1259
W++ + G + SP P P PS + + + ++W P
Sbjct: 85 WIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQ 144
Query: 1260 YYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
+ +W Y + + ++ Y +V G G S
Sbjct: 145 IRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
Score = 45.1 bits (106), Expect = 1e-04
Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 8/145 (5%)
Query: 1463 NDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF---DTATLHVRVLD 1519
SI S+ + + + + G +++ + G + +
Sbjct: 49 IPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVV 108
Query: 1520 RPHPPENLHAD-EFAGDSLTLYWTPPRDNGGSEITNYVVE-KKDYNSTVWTKVSSY-VTT 1576
+P PP ++ A+ L + W P + + + W Y +
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENNLQ--FQIRYGLSGKEVQWKMYEVYDAKS 166
Query: 1577 PFVRVRNLAIGSTYEFRVMAENQYG 1601
V + + + Y +V + G
Sbjct: 167 KSVSLPVPDLCAVYAVQVRCKRLDG 191
Score = 39.7 bits (92), Expect = 0.006
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 453 FTVKGLTEGKKYVFRIRTENMYGA--SEPL--DPLFPDKPSPPEGPLEVSNVTKESC-KL 507
+ + Y IR + G+ S P P KP PP ++ K+
Sbjct: 71 CIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSS-VKAEITINIGLLKI 129
Query: 508 SWRVPVDDGGAPILHYIIE-KMDISRGTWS--DAGMTVSLFYDVPRLIHRKEYLFRVKAV 564
SW PV L + I + W + S +P Y +V+
Sbjct: 130 SWEKPVFPEN--NLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCK 187
Query: 565 NSIGES 570
G
Sbjct: 188 RLDGLG 193
Score = 37.7 bits (87), Expect = 0.021
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRSP 1099
KP PP I +SW+ P + + + W + +S
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKP-VFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSK 167
Query: 1100 AYDVFGLETNRQYRFRVRAENQYG 1123
+ + + Y +VR + G
Sbjct: 168 SVSLPVPDLCAVYAVQVRCKRLDG 191
Score = 35.4 bits (81), Expect = 0.14
Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 23/154 (14%)
Query: 1051 VSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGF----------WSKLSSFVRSPA 1100
+D + W + + + S+ K
Sbjct: 10 ETDGYLTKMTCRWSTS-TIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGF 68
Query: 1101 YDVF--GLETNRQYRFRVRAENQYG--VSEPLELDNSITAKFPFTVPDPPGQPQI-VDWD 1155
Y+ + Y +R + G S P + K P PP + + +
Sbjct: 69 YECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVK-----PLPPSSVKAEITIN 123
Query: 1156 TNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATD 1189
+ W++P +++ + +
Sbjct: 124 IGLLKISWEKPVF--PENNLQFQIRYGLSGKEVQ 155
Score = 33.9 bits (77), Expect = 0.41
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 902 YVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL------SEP 955
+ I W ++P Y +VR + L GL S P
Sbjct: 143 FQIRYGLSGKEVQW-KMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNP 201
Query: 956 ITTK 959
T
Sbjct: 202 AYTV 205
Score = 32.4 bits (73), Expect = 1.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 1884 EDTNWRVANDYLVKDPTYIVHSLLQGHDYEFRVKAKNAAGFSKPS 1928
++ W++ Y K + + Y +V+ K G S
Sbjct: 152 KEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
Score = 31.2 bits (70), Expect = 2.6
Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 1535 DSLTLYWTPPRDNGGSEIT---------NYVVEKKDYNSTVWTKVSSYVTTPF--VRVRN 1583
+T W+ +E T Y + + K + F +
Sbjct: 16 TKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQP 75
Query: 1584 LAIGSTYEFRVMAENQYG-LSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWS 1642
+ + S Y + + G L P + P P P + K + + +
Sbjct: 76 IFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVK----PLPPSSVKAEITINIGLLKISW 131
Query: 1643 KPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYTS 1684
+ + +Q I + +W + S+
Sbjct: 132 EKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPV 173
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 55.3 bits (133), Expect = 7e-09
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 2100 PQSAFCYEGQSVKFTC---RVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTF----- 2151
P S + + C V P+L W N L ++ +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 2152 --VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRK 2186
+N+ + G Y + A N +G +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
Score = 52.3 bits (125), Expect = 6e-08
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 299 GEPPPEVTWTIDGKELK------TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 352
G+P P + W +G L T+ + H + ++G Y L N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 353 SGRDEGSFTVTVLE 366
G+ S ++
Sbjct: 86 FGQASASIMAAFMD 99
Score = 51.5 bits (123), Expect = 1e-07
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 2205 VIWLHNNKEIKPSN-------DFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+ WL N + ++ + A + L++ + ++G YT A N G++ +
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91
Query: 2258 SCTLLVQV 2265
S
Sbjct: 92 SIMAAFMD 99
Score = 50.7 bits (121), Expect = 2e-07
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 1439 KAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQL------TMNSASLVVKNSQR 1492
+ I P P+ W N S+++++ + L T+ L +
Sbjct: 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
+ G Y L NP G +A++ +D P
Sbjct: 73 VNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105
Score = 46.5 bits (110), Expect = 7e-06
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 714 GEPPPEVTWTIDGKELK------TDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 767
G+P P + W +G L T+ + H + ++G Y L N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 768 SGRDEGSFTI 777
G+ S
Sbjct: 86 FGQASASIMA 95
Score = 40.3 bits (94), Expect = 0.001
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 2017 PQSAFCYEGQSVKFTC---RVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLR 2073
P S + + C V P+L W N L ++ +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 2074 KLQIDRFSIQDT 2085
L++++ + +
Sbjct: 64 CLRLNQPTHVNN 75
Score = 31.1 bits (70), Expect = 1.6
Identities = 5/49 (10%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 2264 QVSWYKDGNPVSDDPATYQFTQIGQTYK------MKILSTTLDDVGQYS 2306
+ W +G+ +++ + + +++ T + G Y+
Sbjct: 31 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 59.8 bits (145), Expect = 7e-09
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-AGDDYTF 2151
AP + P+ EG+ + CR ++ W N + R +D T
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 2152 VINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + D G Y N G +LNV
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 47.0 bits (112), Expect = 5e-05
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 266 TCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL---KTDSVRTT 322
C P I +D+ I G+ E++ P V W + + + R +
Sbjct: 349 QCSA----PFIMDAPRDLNISEGR--MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRIS 402
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
V + G + SD+G Y + N +G S + V
Sbjct: 403 VLNDGTLNFSHV---LLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 44.7 bits (106), Expect = 3e-04
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 2204 DVIWLHNNKE-IKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
V WL N + ++ SV + TL + + D+GVYTC N G S +S L
Sbjct: 381 SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Query: 2263 VQVS 2266
V +
Sbjct: 441 VSTA 444
Score = 44.7 bits (106), Expect = 3e-04
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
RD+ + G + P + W + + +R + +N +L + S
Sbjct: 360 RDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLH 1528
D G Y + N AG A+ ++ V + H
Sbjct: 418 DTGVYTCMVTNVAGNSNASAYLNV--STAGTHHHH 450
Score = 41.7 bits (98), Expect = 0.003
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL---KTDSVRTTVTSIGYH 744
AP I +D+ I G+ E++ P V W + + + R +V + G
Sbjct: 352 APFIMDAPRDLNISEGR--MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 745 TIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
+ SD+G Y + N +G S +
Sbjct: 410 NF---SHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 37.0 bits (86), Expect = 0.065
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-AGDDYTF 2068
AP + P+ EG+ + CR ++ W N + R +D T
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT- 408
Query: 2069 YSSLRKLQIDRFSIQDT 2085
L + DT
Sbjct: 409 ------LNFSHVLLSDT 419
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 57.5 bits (139), Expect = 3e-08
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-AGDDYTFV 2152
P V P EG + + CR + +++W N + + R D T
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNH 2197
++D G Y N G LNV H+ +H
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV-----TGTHHHHHH 440
Score = 50.1 bits (120), Expect = 6e-06
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1493
D+ V G + + W + + + ++ +L N
Sbjct: 349 ADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 1494 DGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLH 1528
D G Y + N G TA+ + V + H
Sbjct: 408 DTGMYTCMVSNSVGNTTASATLNVT--GTHHHHHH 440
Score = 45.1 bits (107), Expect = 2e-04
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 266 TCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL---KTDSVRTT 322
TC P I P D+ + G ++ + V+W + VR
Sbjct: 338 TCYA----PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIA 392
Query: 323 VTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTN 372
V S G N D+G Y + N+ G S T+ V T +
Sbjct: 393 VLSDGTLNF---TNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
Score = 42.0 bits (99), Expect = 0.002
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 2204 DVIWLHNNKE-IKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
V W+ N + +V TL + +D+G+YTC N G + +S TL
Sbjct: 371 SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Query: 2263 V 2263
V
Sbjct: 431 V 431
Score = 37.4 bits (87), Expect = 0.049
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 689 PKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL---KTDSVRTTVTSIGYHT 745
P I P D+ + G ++ + V+W + VR V S G
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
N D+G Y + N+ G S T+
Sbjct: 401 F---TNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 33.6 bits (77), Expect = 0.80
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRY-AGDDYTFY 2069
P V P EG + + CR + +++W N + + R D T
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-- 398
Query: 2070 SSLRKLQIDRFSIQDT 2085
L ++QDT
Sbjct: 399 -----LNFTNVTVQDT 409
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B*
Length = 214
Score = 54.4 bits (130), Expect = 8e-08
Identities = 27/210 (12%), Positives = 58/210 (27%), Gaps = 26/210 (12%)
Query: 1237 YSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGK-- 1294
S + +S W+ + R R + P + ++ + +
Sbjct: 13 NSRAQISCVWSQDGALQDTSCQVHAWPDRRRWQQTCE--LLPVSQASWACNLILGAPDSQ 70
Query: 1295 -------YEFRVIAINEAGPGKPS----KPTDIVQCKEQKRKPDPPEAPKVDRITKDSVT 1343
RV+ + KP + + + P + +V +
Sbjct: 71 KLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENL-------RLMAPISLQVVHVETHRCN 123
Query: 1344 LSWRPPKHDGG-ARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG--NLSEGEEYTFRVI 1400
+SW + R + + G W +A + + + L+ +Y F+V
Sbjct: 124 ISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVR 183
Query: 1401 AVNEAGNSEP-GKQSGPVIVEEQPNKPVMD 1429
G S P+ +P D
Sbjct: 184 VKPLQGEFTTWSPWSQPLAFRTKPAALGKD 213
Score = 52.5 bits (125), Expect = 3e-07
Identities = 24/194 (12%), Positives = 47/194 (24%), Gaps = 17/194 (8%)
Query: 85 NITKSSCNLEWRAPRDDGGT--------DILHYVVEKMDMETGRWVPMGDVSGTYTRAEN 136
+ + SC W T D + + + ++ ++
Sbjct: 14 SRAQISC--VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQK 71
Query: 137 LIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEW-T 195
L RV + + + R P V ++ W
Sbjct: 72 LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENL---RLMAPISLQVVHVETHRCNISWEI 128
Query: 196 PPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKG 253
++ WE+A ++ + L +YEF+V
Sbjct: 129 SQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQ 188
Query: 254 GP-GEPSKASAPVT 266
G S S P+
Sbjct: 189 GEFTTWSPWSQPLA 202
Score = 48.2 bits (114), Expect = 8e-06
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 8/114 (7%)
Query: 1198 HADVGQTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWN-PPANHGGRP 1256
G +QD + ++ AP +V +++W A+H
Sbjct: 83 LCREGVRWRVMAIQDFKPFENLR-----LMAPISLQVVHVETHRCNISWEISQASHYFER 137
Query: 1257 ITGYYVEKRERGGEWLRAN--NYPTTNLNFTVHDLREGGKYEFRVIAINEAGPG 1308
+ G W A + L +YEF+V G
Sbjct: 138 HLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
Score = 47.1 bits (111), Expect = 2e-05
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWK-PPLNDGGSPITDYIIQKKEKGNPYWM-NALEVPANKT 645
AP V +++W+ + ++ + G+ + L + +
Sbjct: 106 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 165
Query: 646 DVKIPDLTKGQEYEFRVIAVNEAGPSEP-SDASD 678
+ + LT +YEF+V G S S
Sbjct: 166 WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQ 199
Score = 43.2 bits (101), Expect = 4e-04
Identities = 11/101 (10%), Positives = 23/101 (22%), Gaps = 3/101 (2%)
Query: 1504 NPAGFDTATLHVRVLDRPHPPENLHADEFAGDSLTLYW-TPPRDNGGSEITNYVVEKKDY 1562
R P +L + W + +
Sbjct: 89 RWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSP 148
Query: 1563 NST--VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYG 1601
T ++ ++ + L + YEF+V + G
Sbjct: 149 GHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQG 189
Score = 42.1 bits (98), Expect = 0.001
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 20/118 (16%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSK---LSSFVR 1097
+ P L V + C++SW+ + S W + L+ +
Sbjct: 105 RLMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQK 163
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQYGV-------SEPLELDNSITAKFPFTVPDPPGQ 1148
+ L + QY F+VR + G S+PL T P G+
Sbjct: 164 QEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR---------TKPAALGK 212
Score = 42.1 bits (98), Expect = 0.001
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 21/137 (15%)
Query: 448 CPKEFFTVKGLTEGKKYVFRIRTENMYGAS----EPLDPLFPDKPSPPEGPLEVSNVTKE 503
+ LT R+ + P + P L+V +V
Sbjct: 62 LILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPIS-LQVVHVETH 120
Query: 504 SCKLSWRVPVDDGGAPILHYIIEKMDI------SRGTWSDAGMTV----SLFYDVPRLIH 553
C +SW + HY ++ TW +A + + + L
Sbjct: 121 RCNISWEIS------QASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTP 174
Query: 554 RKEYLFRVKAVNSIGES 570
+Y F+V+ GE
Sbjct: 175 DTQYEFQVRVKPLQGEF 191
Score = 36.7 bits (84), Expect = 0.045
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 813 KPDPPEAPKVDRITKDSVTLSWRPPKHDGG-ARIKGYIVQKRKKGGDWVDANSVPVPNPV 871
+ P + +V + +SW + R + + G W +A + +
Sbjct: 105 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 164
Query: 872 HTLL 875
+
Sbjct: 165 EWIC 168
Score = 36.3 bits (83), Expect = 0.071
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGG-TDILHYVVE-KMDMETGRWVPMGDVSGTY 131
P L+ ++ CN+ W + L + T P+ +
Sbjct: 106 LMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 164
Query: 132 TRA--ENLIEGHDYNFRVKAVNKIGES 156
E L Y F+V+ GE
Sbjct: 165 EWICLETLTPDTQYEFQVRVKPLQGEF 191
Score = 30.9 bits (69), Expect = 3.7
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 904 IEKRDLTHGGGWVPA-VNHVSPYDHHATVPRLLEGTTYEFRVRAENLQGL-------SEP 955
E R L+ G W A + + + L T YEF+VR + LQG S+P
Sbjct: 141 FEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQP 200
Query: 956 IT--TKEPVVAKN 966
+ TK + K+
Sbjct: 201 LAFRTKPAALGKD 213
Score = 30.1 bits (67), Expect = 6.9
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 1884 EDTNWRVANDYLVKDP--TYIVHSLLQGHDYEFRVKAKNAAGFSKPSS 1929
W A +K + +L YEF+V+ K G S
Sbjct: 148 PGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWS 195
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 52.6 bits (126), Expect = 1e-07
Identities = 17/180 (9%), Positives = 45/180 (25%), Gaps = 32/180 (17%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL----KQSVKFMKRYAG------DDY 2149
Q + +V F + + W ++ + +
Sbjct: 2 SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 2150 TFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN--------HRRAN 2201
+ I D EY + + N + FL V P+I+++
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMK--FFLYVLEMVSKPMIYWECSNATLTCEVLEGT 118
Query: 2202 KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
++ + ++ ++ + + C+A N + +
Sbjct: 119 DVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 45.7 bits (108), Expect = 3e-05
Identities = 28/169 (16%), Positives = 45/169 (26%), Gaps = 25/169 (14%)
Query: 1435 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSII---DDSDTRVHKQ------LTMNSASL 1485
I + + HVP P W + ++S+ R L S SL
Sbjct: 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 1486 VVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE--------NLHADEFAGDSL 1537
+ N SD +Y ++ N T + VL+ P L + G +
Sbjct: 63 TIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDV 120
Query: 1538 TLYWT--PPRDNGGSEITNYVVEKKD---YNSTVWTKVSSYVTTPFVRV 1581
L + T + +VS V
Sbjct: 121 ELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 41.8 bits (98), Expect = 7e-04
Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 36/150 (24%)
Query: 2172 YGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHT- 2230
YG V +V L + +K + D + N E + + F +
Sbjct: 6 YGVVYGNVTFHVPSNVPLKEVLWKKQK-----DKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 2231 -LKIAEIFPEDSGVYTCEAFNDEGE------------------SFSSCTLL--------V 2263
L I + D Y E+ N S+ TL V
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDV 120
Query: 2264 QVSWYKDGNPVSDDPA---TYQFTQIGQTY 2290
++ Y+ + +YQ+T + +
Sbjct: 121 ELKLYQGKEHLRSLRQKTMSYQWTNLRAPF 150
Score = 38.4 bits (89), Expect = 0.009
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 298 IGEPPPEVTWTIDGK---ELKTDSVRTTVTSIGYHTIVNT------VNTKRSDSGTYHLE 348
P EV W EL+ R + + N SD Y +E
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 349 LRNTSGRDEGSFTVTVLETISKTNTTTISS 378
N + F + VLE +SK S
Sbjct: 79 SPNITDTM--KFFLYVLEMVSKPMIYWECS 106
Score = 29.9 bits (67), Expect = 6.3
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 713 IGEPPPEVTWTIDGK---ELKTDSVRTTVTSIGYHTIVNT------VNTKRSDSGTYHLE 763
P EV W EL+ R + + N SD Y +E
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 764 LRNTSGRDEGSFTI 777
N + + +
Sbjct: 79 SPNITDTMKFFLYV 92
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 50.8 bits (121), Expect = 1e-07
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQSVKFMKRYAGDDY-- 2149
P+ ++P++ G V FTC + + +T W +N+ L+ + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 2150 ------TFVINRTKMEDRGEYIIRAENHYG 2173
+ + G Y NH+G
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 23/112 (20%)
Query: 1416 PVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA--FWFANDSIIDDSDTR 1473
P I QP + G D S + W ++ + D++
Sbjct: 11 PQITV-QP----------ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEME 59
Query: 1474 VHKQLTMN-------SASLVVKNSQRSDGGQYRLQLKNPAGFDT---ATLHV 1515
+ L + L ++N + + G Y+ + N G A L +
Sbjct: 60 NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 43.1 bits (101), Expect = 8e-05
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLT--WFHNNQELKQS-VKFMKRYAGDDYT 2067
P+ ++P++ G V FTC + + +T W +N+ L+ + ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 2068 FYSSLRKLQIDRFSIQD 2084
L++
Sbjct: 71 LMEYTTILRLRNVEFTS 87
Score = 40.4 bits (94), Expect = 7e-04
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 271 FVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKELKTDSVRTTVTSIGY 328
F P+I + G ++ +T W D + L+ +
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 329 HTIVNTV-------NTKRSDSGTYHLELRNTSGRDEGS-FTVTV 364
+ N + + G Y + N G +T+
Sbjct: 68 GGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 40.1 bits (93), Expect = 0.001
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 9/93 (9%)
Query: 686 FLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVT--WTIDGKELKTDSVRTTVTSIGY 743
F P+I + G ++ +T W D + L+ +
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 744 HTIVNTV-------NTKRSDSGTYHLELRNTSG 769
+ N + + G Y + N G
Sbjct: 68 GGELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
Score = 39.3 bits (91), Expect = 0.002
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSV--------AHVHTLKIAEIFPEDSGVYTCEAFNDEGESF 2256
W +N+ ++ + Y+ + + L++ + G Y C N G S+
Sbjct: 44 FAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Query: 2257 SSCTLL 2262
S L
Sbjct: 104 SVXAXL 109
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein
kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis
thaliana} PDB: 3tl8_A*
Length = 326
Score = 54.9 bits (133), Expect = 2e-07
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 36/183 (19%)
Query: 1696 IGTGAFGVVHRCRERKTGNIFAAKFIPV--SHNLEKELIRKEIDIMNQLHHPKLINLHDA 1753
+G G FG V++ R G + A K + + E + E+++++ H L+ L
Sbjct: 38 LGRGGFGKVYKGR-LADGTLVAVKRLKEERTQGGELQFQT-EVEMISMAVHRNLLRLRGF 95
Query: 1754 FEDDDEMVLIFEFLSGGELFERITAPDYKMSE-------------AEVINYMRQVCEAVK 1800
E +L++ +++ G + + A + Y+
Sbjct: 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYL-------- 147
Query: 1801 HMHEK---NIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST---GTAEFA 1854
H+ IIH DVK NI+ + DFGLA KL + ++T GT
Sbjct: 148 --HDHCDPKIIHRDVKAANILLD--EEFEAVVGDFGLA-KLMDYKDTHVTTAVRGTIGHI 202
Query: 1855 APE 1857
APE
Sbjct: 203 APE 205
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.1 bits (133), Expect = 2e-07
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 1/116 (0%)
Query: 2070 SSLRKLQIDRFSIQDTSFDRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIAIATPTLTWF 2128
++ + F R K Q F EG +V+F CR P + W
Sbjct: 361 EFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWL 420
Query: 2129 HNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ L + + D T + +++D G Y+ A N G L+V+
Sbjct: 421 SPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 50.9 bits (122), Expect = 3e-06
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 11/120 (9%)
Query: 1398 RVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPA 1457
+ I + + + V G P PA
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQ----------QVFVDEGHTVQFVCRADGDPPPA 416
Query: 1458 AFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
W + + + + + + +L V+ +Q D G Y N G D+ H+ V
Sbjct: 417 ILWLSPRKHLVSAKSNGRLTVFPDG-TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 46.6 bits (111), Expect = 9e-05
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
++WL K + + +V TL++ +D+G Y C A N G L V
Sbjct: 416 AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Query: 2264 Q 2264
+
Sbjct: 476 R 476
Score = 46.2 bits (110), Expect = 9e-05
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 262 SAPVTCKPRFVAPKIKT-PLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL--KTDS 318
+ +I+ + + + G + + G+PPP + W K L +
Sbjct: 373 DVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN 432
Query: 319 VRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
R TV G + + D+GTY N G D + V
Sbjct: 433 GRLTVFPDG---TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 41.2 bits (97), Expect = 0.004
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 688 APKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKEL--KTDSVRTTVTSIGYHT 745
A + + + G + + G+PPP + W K L + R TV G
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--- 441
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEGSFTIV 778
+ + D+GTY N G D +
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 36.2 bits (84), Expect = 0.12
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 1958 NLIKMRDRIRSKYEGWDE--CVLPLGRLSQYSSLRKLQIDRFSIQDTSFDRRQAAPRFV- 2014
L+ + R + C P ++ + F R
Sbjct: 337 RLLWVFRRRWRLNFNRQQPTCATP-------EFVQGKEFKDFPDVLLPNYFTCRRARIRD 389
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL 2051
K Q F EG +V+F CR P + W + L
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHL 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-07
Identities = 72/368 (19%), Positives = 110/368 (29%), Gaps = 140/368 (38%)
Query: 68 LQWLHIPS--PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV--EKMDMETGRWVP 123
L+WL PS P + L I SC L G + HYVV + + G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI---SCPL-------IGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 124 MGDVSGTYTRAENLI------EGHDY-NFR---VKAVN---KIG----ESLPLVCQSPIT 166
+ G ++ L+ E + +F KA+ IG E+ P P
Sbjct: 266 Y--LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 167 AKDPFGRPDRPGQPT----VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 222
+D + G P+ +++ ++ V Q + K + P K
Sbjct: 324 LEDS--LENNEGVPSPMLSISNLTQEQV----------------QDYVNKTNSHLPAGKQ 365
Query: 223 -CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS----------KASAPVTC---- 267
I N A ++ V++ GP P KA AP
Sbjct: 366 VEISLVN-GAKNL------------VVS----GP--PQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 268 ------KPRFV-------AP---KIKTPLKDIIIKAGKILNVEIQFIGE----PPPEVTW 307
K +F +P + P D+I K ++ + F + P V
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--LVKNNVSFNAKDIQIP---VYD 461
Query: 308 TIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSD--------------------SGTYHL 347
T DG +L R SI IV+ + SG L
Sbjct: 462 TFDGSDL-----RVLSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 348 ELRNTSGR 355
RN G
Sbjct: 516 THRNKDGT 523
Score = 52.7 bits (126), Expect = 2e-06
Identities = 98/601 (16%), Positives = 165/601 (27%), Gaps = 224/601 (37%)
Query: 1428 MDLSGVRDITVKAGE-DFSIHVP----FMA------F----PQPAAFWFANDSIIDDSDT 1472
MD R +T+ G + + VP F+A F P+P FA D D+ T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE-GFAAD---DEPTT 56
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNP-AGFDTATLHVRVLDRPHPPENLHADE 1531
L V + S GQ+ L F+ L ++HA
Sbjct: 57 PAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---------NDIHA-- 103
Query: 1532 FAGDSLTLYWTPPRDNGGSEITNYV--------VEKKDYNSTVWTKVSSYVTTPFVRVRN 1583
A L I NY+ K NS ++ V
Sbjct: 104 LAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV----- 157
Query: 1584 LAI----GST--Y--EFRVMAENQYGLSKPALTIDPIK---------AKHPFDVPGAPGA 1626
AI G+T Y E R + Y + D IK + D
Sbjct: 158 -AIFGGQGNTDDYFEELR----DLYQTYHVLVG-DLIKFSAETLSELIRTTLDAE--KVF 209
Query: 1627 PKGVDSTEDSISLVW-----SKPRHD--GGSPI--------Q--RYIVEKRLISDD---- 1665
+G++ E W + P D PI Q Y+V +L+
Sbjct: 210 TQGLNILE------WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 1666 -KWIKASMAHIPD----TSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKF 1720
++K + H ++ T S + + + T F + RC E +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNTS 318
Query: 1721 IPVS-------------------HNLEKELIRKEIDIMNQLHHPK-------LINLHDAF 1754
+P S NL +E ++ ++ N H P L+N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNL 377
Query: 1755 -----------------------EDD------DEMVLIF--EFLSGGELFERITAPDYKM 1783
D E L F FL + +P +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-------PVASP-FH- 428
Query: 1784 SEAEVINYMRQVCEAVKHMHEKNIIHLDVKPENI-MCQTRNSTNVKMIDFGLATKLDPNE 1842
S + + + KN + + K I + T + ++++++ ++ ++
Sbjct: 429 SH-----LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI---- 479
Query: 1843 VVKISTGTAEFAAPEIVEREPVGFYTDMWAVGVLAYVLDVAEDTNWRVANDYLVKDPTYI 1902
I+ R PV W + T+I
Sbjct: 480 ------------VDCII-RLPV----------------------KWETTTQF---KATHI 501
Query: 1903 V 1903
+
Sbjct: 502 L 502
Score = 51.2 bits (122), Expect = 5e-06
Identities = 55/340 (16%), Positives = 95/340 (27%), Gaps = 122/340 (35%)
Query: 1975 ECVL--PLGRLSQYSSLRKLQIDRFS------IQDTSFDRRQAAP-----RFVIKPQSAF 2021
E VL P S L+ ++F+ + + D P +F+ +
Sbjct: 17 EHVLLVPTASFFIASQLQ----EQFNKILPEPTEGFAADDEPTTPAELVGKFL-----GY 67
Query: 2022 C---YEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDD-YTFYSSL----R 2073
E V +V+ + LT F N +++ G+D + + L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLC---LTEFENC--------YLE---GNDIHALAAKLLQEND 113
Query: 2074 KLQIDRFSIQDTSFDRRQAAPRFVIKP-QSAF---CYEGQSVKFTCRVIAI---ATPTLT 2126
+ + R A R K SA EG + +++AI T
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-----QLVAIFGGQGNTDD 168
Query: 2127 WFHNNQELKQSVKFMKRYAGDDY-TFVINRTKMEDRGEYIIRAENHYGYREEVVFLN--V 2183
+F +EL+ Y Y V G+ I + L+ +
Sbjct: 169 YF---EELR------DLY--QTYHVLV---------GDLIKFSAET---------LSELI 199
Query: 2184 QRKYDLPVIHYKNHRRANKYDVI-WLHNNKEIKPSNDF-----------------AYSSV 2225
+ D + + +++ WL N P D+ Y
Sbjct: 200 RTTLDAEKVFTQG------LNILEWLENPSN-TPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 2226 AHVHTLKIAEIFPEDSGVYTCE---------AFNDEGESF 2256
A + E+ G A D ESF
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Score = 45.4 bits (107), Expect = 3e-04
Identities = 99/639 (15%), Positives = 174/639 (27%), Gaps = 255/639 (39%)
Query: 102 GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 161
G DI H + K+ + T + + LI+ +Y + A
Sbjct: 97 EGNDI-HALAAKLL---------QENDTTLVKTKELIK--NY---ITARIMAKRPFDKKS 141
Query: 162 QSPI--TAKDP-------FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK 212
S + + FG GQ D+ ++ DL Y
Sbjct: 142 NSALFRAVGEGNAQLVAIFG-----GQGNTDDYFEELRDL---------------YQT-- 179
Query: 213 KPKYGPWEKACIVPANIT-ATSVPDLKEGEEYEFRVIAVNK--GGPGE-PSK---ASAPV 265
Y I + T + + + E+ + + + + P P K S P+
Sbjct: 180 ---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 266 TCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTS 325
+C PL I + IQ + + K L
Sbjct: 237 SC-----------PL--IGV---------IQL-------AHYVVTAKLL----------- 256
Query: 326 IGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNT----TTISSKNM 381
G+ G L+ +G +G T I++T++ K +
Sbjct: 257 -GFTP------------GELRSYLKGATGHSQGLVTAVA---IAETDSWESFFVSVRKAI 300
Query: 382 MYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNHLPIMEAVKSRYI-IEMAEYGLDN 440
LF + + R + EA + + + E L+N
Sbjct: 301 TVLF----------------F---------IGVRC-Y----EAYPNTSLPPSILEDSLEN 330
Query: 441 WKTVPGFCPKEFFTVKGLTEGKKYVF-RIRTENMYGASEPLDPLFPDKPSPPEGPLEVSN 499
+ VP P ++ LT ++ V + N + P +E+S
Sbjct: 331 NEGVP--SP--MLSISNLT--QEQVQDYVNKTNSHL--------------PAGKQVEISL 370
Query: 500 VTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLF 559
V +G + ++ +G SL+ L RK
Sbjct: 371 V--------------NGAK---NLVV------------SGPPQSLYGLNLTL--RK---- 395
Query: 560 RVKAVNSIGESDTLETTKTTVARNEFDEPDAPE-----KPTVKDWGEDFV--DLAWKP-- 610
KA + + +S + + N F +P P +D V ++++
Sbjct: 396 -AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 611 ---PL---NDG----------GSPITDYIIQKKEKGNP-YWMNALEVPANK-------TD 646
P+ DG I D II+ P W + A
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-----PVKWETTTQFKATHILDFGPGGA 509
Query: 647 VKIPDLTK------GQEYEFRVIAVNEAGPSEPSDASDI 679
+ LT G RVI AG + + D
Sbjct: 510 SGLGVLTHRNKDGTG----VRVI---VAGTLDINPDDDY 541
Score = 45.4 bits (107), Expect = 3e-04
Identities = 111/662 (16%), Positives = 186/662 (28%), Gaps = 249/662 (37%)
Query: 438 LDNWKTVPGFCPKEFFTVKGLTEGK-KYVFRIRTENMYGASEPLDPLFPDK-PSPPEGPL 495
+D + T P T L+ G ++V + T + + L F P P EG
Sbjct: 1 MDAYSTRP-------LT---LSHGSLEHVLLVPT-ASFFIASQLQEQFNKILPEPTEG-F 48
Query: 496 EVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYDVPRLIHR- 554
+ +L L Y+ ++ S V F V L
Sbjct: 49 AADDEPTTPAELV---------GKFLGYVSSLVEPS---------KVGQFDQVLNLCLTE 90
Query: 555 --KEYLFRVKAVNSI-----GESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFVDLA 607
YL ++++ E+DT + +N ++P K
Sbjct: 91 FENCYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 608 WKPPLNDGGSPITDYII---QKKEKGNP--YWMNALEVPANKTDVKIPDLTKGQE----Y 658
+G + + I Q GN Y+ +L ++ Y
Sbjct: 150 -----GEGNAQL--VAIFGGQ----GNTDDYF---------------EEL---RDLYQTY 180
Query: 659 EFRVIA-VNEAGP------SEPSDAS-------DIIMCKQRFLAPKIKTPLKDIIIKA-- 702
V + + DA +I+ +L TP KD ++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL----EWLENPSNTPDKDYLLSIPI 236
Query: 703 -GKILNVEIQF---------IGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNT 752
++ V IQ +G P E+ + G T S G +V V
Sbjct: 237 SCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKG---------ATGHSQG---LVTAVAI 283
Query: 753 KRSDSGT-------------YHLELR--NTSGRDEGSFTIVPDHLKNLWNTKKSLHPVLH 797
+DS + + +R +I+ D L+N + P+L
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN---NEGVPSPMLS 340
Query: 798 CRG-------------N-HLPIMEAVK-SRK--PD------PPEAPKVDRITKDSVTLSW 834
N HLP + V+ S PP++ + L+
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-------GLNLTL 393
Query: 835 RPPKHDGG---ARIKGYIVQKRKKGGDWVDANSVPVPNPVHTLLSIGYLSQFLAEEKKHG 891
R K G +RI +RK +PV +P H+ L A + +
Sbjct: 394 RKAKAPSGLDQSRIPF---SERKLKFSNR---FLPVASPFHSH----LLVP--ASDLINK 441
Query: 892 KLLLAKVENGYVIEKRDLTHGGGWVPAVNHVSPYDHHATVPRLLEGTTYEFRVRAENLQG 951
L+ V +D+ +P V YD T++ +L+
Sbjct: 442 DLVKNNVS----FNAKDIQ-----IP-V-----YD------------TFD----GSDLRV 470
Query: 952 LSEPIT-------TKEPVVAKNQYGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPF 1004
LS I+ + PV KW Q I+D F
Sbjct: 471 LSGSISERIVDCIIRLPV-----------KWE------TTTQFKATHILD---------F 504
Query: 1005 DP 1006
P
Sbjct: 505 GP 506
Score = 45.0 bits (106), Expect = 3e-04
Identities = 86/578 (14%), Positives = 148/578 (25%), Gaps = 239/578 (41%)
Query: 1036 RPITDKPSPPQGPLDVSDITPES----CSLSWKPPLDDGGSPITNYVV-EKYESATGFWS 1090
RP+T G L+ + P + S + P + ++ +
Sbjct: 7 RPLTLS----HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 1091 KLSSFVRSPAYDVFGLETNRQYRFR-------VRAENQYGVSEPLELDN--SITAKFPFT 1141
K +V S +E ++ +F EN Y LE ++ ++ AK
Sbjct: 63 KFLGYVSSL------VEPSKVGQFDQVLNLCLTEFENCY-----LEGNDIHALAAKLL-- 109
Query: 1142 VPDPPGQPQIVDWDTN--NATLMWDRPRT------------DGGSKI------QG----Y 1177
+ + + N A +M RP +G +++ QG Y
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 1178 KVEFRST------------RTATDCGLGYQQCHADVGQT-PHGW----WLQDSRIQGRIQ 1220
E R + + + + D + G WL++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-------- 221
Query: 1221 SPFDPPD------AP-SQP--------------EVTGYSPSSVSLAWNPPANHGGRPITG 1259
P + PD P S P ++ G++P + H +T
Sbjct: 222 -PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 1260 YYVEKRERGGEW------------------LRANN-YPTTNLNFT-VHDLREGG------ 1293
+ + W +R YP T+L + + D E
Sbjct: 281 VAIAE---TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 1294 ----------KYEFRVIAINE---------------------AGP-----G------KPS 1311
+ + V N +GP G K
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 1312 KPTDIVQCKEQKRKPDPPEAPKV--------------------DRITKD--SVTLSWRPP 1349
P+ +Q R P K D I KD +S+
Sbjct: 398 APSG----LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 1350 K--------HDG----------GARIKGYIVQKRKKGGDWVDANSVPV-------PNPVH 1384
DG RI I++ W P
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKATHILDFGPGGAS 510
Query: 1385 TVGNLS----EGEEYT-FRVI---AVNEAGNSEPG-KQ 1413
+G L+ +G T RVI ++ + + G KQ
Sbjct: 511 GLGVLTHRNKDG---TGVRVIVAGTLDINPDDDYGFKQ 545
Score = 36.6 bits (84), Expect = 0.13
Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 96/301 (31%)
Query: 1508 FDTATLHVR------VLD--RPHPPENLHADEFAGDSLTLYWTPPRDNGGSEIT-NY--- 1555
++ A H + +LD +P LT+++ + G I NY
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVN-----------LTIHFGGEK---GKRIRENYSAM 1691
Query: 1556 VVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFR----VMAENQYGLSKPALT--- 1608
+ E K+ + ++Y FR +++ Q+ ++PALT
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHS---------TSYTFRSEKGLLSATQF--TQPALTLME 1740
Query: 1609 ---IDPIKAKHPFDVP--------G---APGAPKGVDSTEDSISLVWSKPRHDGGSPIQR 1654
+ +K+K G A + V S E + +V R G +Q
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYR---GMTMQV 1795
Query: 1655 YIVEKRLISDDKWIKASMAHIPDTSLKYTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN 1714
+ L + M I + + S ++E +G +V E
Sbjct: 1796 AVPRDELGRSN----YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----E----- 1842
Query: 1715 IFAAKFIPVSHNL---------EKELIRKEIDIMNQLHHPK--LINLHDAF--EDDDEMV 1761
V++N+ + + +++N + K +I L + E+ + +
Sbjct: 1843 -------IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Query: 1762 L 1762
Sbjct: 1896 F 1896
Score = 35.8 bits (82), Expect = 0.24
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 42/145 (28%)
Query: 30 VSQGEAMSYQTGI--VRVNCVDCLDRTNTAQFAVGKCALALQWLHIPSPPEGPLKPSNIT 87
S + MS ++ + V R T Q AV P L SN
Sbjct: 1771 ASLADVMSIESLVEVVFY-------RGMTMQVAV---------------PRDELGRSNYG 1808
Query: 88 KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-------PMGD---VSGTYTRA-EN 136
+ N A + L YVVE++ TG V +G RA +
Sbjct: 1809 MIAINPGRVAA--SFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQQYVAAGD-LRALDT 1864
Query: 137 LIEGHDYNFRVKAVN--KIGESLPL 159
+ ++ +++ ++ ++ +SL L
Sbjct: 1865 VTNVLNFI-KLQKIDIIELQKSLSL 1888
Score = 34.6 bits (79), Expect = 0.46
Identities = 29/213 (13%), Positives = 59/213 (27%), Gaps = 62/213 (29%)
Query: 1271 WLRANNYPTTNLNFTVHDL-REGGKYEFRVIAINEAGP-GKPSKPTDIVQCKEQKRKPDP 1328
W RA+N+ F++ D+ + I+ G GK + E
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVN----LTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 1329 PEAPKVDRITKDSVTLSWRPPKHD--------------GGARIKGYIVQK-RKKGGDWVD 1373
I + S + ++R K A + + KG
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-----AFEDLKSKGL---- 1752
Query: 1374 ANSVPVPNPV--HTVGNLSEGEEYT-------------------FRVIAVNEAGNSEPGK 1412
+P H++G EY +R + + A +
Sbjct: 1753 ---IPADATFAGHSLG------EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 1413 QSGPVIVEEQPNKPVMDLS--GVRDITVKAGED 1443
+S ++ P + S ++ + + G+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Score = 32.3 bits (73), Expect = 2.3
Identities = 38/186 (20%), Positives = 56/186 (30%), Gaps = 74/186 (39%)
Query: 2167 RAENH----YGYR-EEVVFLNVQRKYDLPVIHYKNHR----RANKYDVIWLHNNKEIKPS 2217
RA+NH YG+ ++V N IH+ + R N Y +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLT----IHFGGEKGKRIREN-YSAM----------- 1691
Query: 2218 NDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDD 2277
F + T KI + E S YT F E LL
Sbjct: 1692 -IFETIVDGKLKTEKIFKEINEHSTSYT---FRSEKG------LLSA------------- 1728
Query: 2278 PATYQFTQ-------IGQTYKMKILSTTLDD---------VGQYSA--QMGGIIAAFS-- 2317
T QFTQ +K S L +G+Y+A + ++ +
Sbjct: 1729 --T-QFTQPALTLMEKAAFEDLK--SKGLIPADATFAGHSLGEYAALASLADVM-SIESL 1782
Query: 2318 LNVVKE 2323
+ VV
Sbjct: 1783 VEVVFY 1788
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 52.8 bits (126), Expect = 3e-07
Identities = 32/209 (15%), Positives = 55/209 (26%), Gaps = 28/209 (13%)
Query: 74 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVS 128
P P P N+T S N L W G + Y V + RW + + +
Sbjct: 1 PGRPRLA-PPQNVTLLSQNFSVYLTWLPGL--GNPQDVTYFVAYQSSPTRRRWREVEECA 57
Query: 129 GT------YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR---PGQ 179
GT + + + RV+ V+ +S P + P
Sbjct: 58 GTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKS-------PWVESEYL-DYLFEVEPAP 109
Query: 180 PTVTDWGKD---HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 236
P + + + + P + + K G + P
Sbjct: 110 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQ 169
Query: 237 LKEGEEYEFRVIAVNKGGPGEPSKASAPV 265
E + + + SK S P
Sbjct: 170 PAASEHHCLSARTIYTFSVPKYSKFSKPT 198
Score = 45.8 bits (108), Expect = 6e-05
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 12/181 (6%)
Query: 1244 LAWNPPANHGGRPITGYYVEKR--ERGGEWLRAN---NYPTTNLNFTVHDLREG-GKYEF 1297
L W P + Y+V + W + ++ K++
Sbjct: 23 LTWLPGLGNP--QDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKG 80
Query: 1298 RVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDGGARI 1357
RV ++ + + + E +P PP S +++ P +
Sbjct: 81 RVRTVSPSSKSPWVESEYLDYLFE--VEPAPPVLVLTQTEEILSANATYQLPPCMPPLDL 138
Query: 1358 KGYIVQKRKKG-GDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSGP 1416
K Y V K+G G+ P PV + E + + + K S P
Sbjct: 139 K-YEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKP 197
Query: 1417 V 1417
Sbjct: 198 T 198
Score = 43.1 bits (101), Expect = 5e-04
Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 18/182 (9%)
Query: 507 LSWRVPVDDGGAPILHYIIE-KMDISRGTWSDAG---MTVSLFYDVPRLIHRK---EYLF 559
L+W G + Y + + +R W + T L + L + ++
Sbjct: 23 LTWLPG--LGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKG 80
Query: 560 RVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDF---VDLAWKPPLNDGG 616
RV+ V+ +S +E+ P P + + + ++ P
Sbjct: 81 RVRTVSPSSKSPWVESEYLDYLFEVEPAP-----PVLVLTQTEEILSANATYQLPPCMPP 135
Query: 617 SPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDA 676
+ Y + ++G P + + + + + S
Sbjct: 136 LDLK-YEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSKF 194
Query: 677 SD 678
S
Sbjct: 195 SK 196
Score = 36.6 bits (84), Expect = 0.066
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 19/136 (13%)
Query: 1061 LSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSFVRSPA-----YDVFGLETNRQYRF 1114
L+W P G Y V + W ++ + + + +++
Sbjct: 23 LTWLPG--LGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKG 80
Query: 1115 RVRAENQYGVSEPLELDNSITAKFPFTVPD-PPGQPQIVDWDTNNA---TLMWDRPRTDG 1170
RVR + S +E +++ + + P P +V T + P
Sbjct: 81 RVRTVSPSSKSPWVE------SEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMP 134
Query: 1171 GSKIQGYKVEFRSTRT 1186
++ Y+V F
Sbjct: 135 PLDLK-YEVAFWKEGA 149
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 50.2 bits (119), Expect = 3e-07
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 2090 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWF---HNNQELKQSVKFMKR 2143
+ F+ KP S G+ +V PT+ WF K +F +
Sbjct: 9 EEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFK 68
Query: 2144 YAGDDYTFV------INRTKMEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ + + V I + + DRG Y + + ++V+
Sbjct: 69 ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 39.0 bits (90), Expect = 0.003
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 2201 NKYDVIWL---------HNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND 2251
+K + W + +S + L I ++ D G Y E
Sbjct: 43 DKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAK 102
Query: 2252 EGESFSSCTLLVQV 2265
+ + V+
Sbjct: 103 DTCDSCGFNIDVEA 116
Score = 38.6 bits (89), Expect = 0.004
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 1434 RDITVKAGEDFSIHVPFMAFP---QPAAFWFANDSIIDDSDTRVHKQL--------TMNS 1482
++V+ G+D + +P WF + S + + +
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 1483 ASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
L + D G YRL++K D+ ++ V
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 37.1 bits (85), Expect = 0.010
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 2007 RQAAPRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWF 2045
+ F+ KP S G+ +V PT+ WF
Sbjct: 9 EEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWF 50
Score = 35.9 bits (82), Expect = 0.026
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 276 IKTPLKDIIIKAGKILNVEIQFIGEP---PPEVTWTIDGKELKTDS---------VRTTV 323
+K P + ++ GK V + G+ P + W GK L+ S
Sbjct: 16 LKKP-DSVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNS 73
Query: 324 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
S Y ++ D G Y LE++ D F + V
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 32.9 bits (74), Expect = 0.40
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 691 IKTPLKDIIIKAGKILNVEIQFIGEP---PPEVTWTIDGKELKTDS---------VRTTV 738
+K P + ++ GK V + G+ P + W GK L+ S
Sbjct: 16 LKKP-DSVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNS 73
Query: 739 TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEGSFTI 777
S Y ++ D G Y LE++ D F I
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor,
cell adhesion, integrin ligand, glycopr LFA-1 ligand,
immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP:
b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 51.6 bits (123), Expect = 3e-07
Identities = 33/184 (17%), Positives = 52/184 (28%), Gaps = 10/184 (5%)
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFH--NNQELKQSVKFMKRYAGDDYTFYSSL 2072
+ P G SV TC L +EL K Y + S
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQP 63
Query: 2073 R-KLQIDRFSIQDTSFDRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIAIA---TPTLTW 2127
+F P V + P ++ G+ + C+V A T+
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVL 123
Query: 2128 FHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKY 2187
+ELK + A T ++ R ++ R E + +F N Y
Sbjct: 124 LRGEKELK-REPAVGEPAEVTTTVLVRRD--HHGAQFSCRTELDLRPQGLELFENTSAPY 180
Query: 2188 DLPV 2191
L
Sbjct: 181 QLQT 184
Score = 33.2 bits (75), Expect = 0.67
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 2011 PRFV-IKPQSAFCYEGQSVKFTCRVIAIA---TPTLTWFHNNQELKQSVKFMKRYAGDDY 2066
P V + P ++ G+ + C+V A T+ +ELK + A
Sbjct: 86 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK-REPAVGEPAEVTT 144
Query: 2067 TF 2068
T
Sbjct: 145 TV 146
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET
immunoglobulin superfamily, H-bonded G strand PAIR,
single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4
PDB: 1xmw_A
Length = 186
Score = 51.8 bits (123), Expect = 4e-07
Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 52/184 (28%)
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIR 2167
G SV+ TC + + L W N QEL Q D + + + +++ED G Y+
Sbjct: 14 GTSVELTCPLDS--DENLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCY 63
Query: 2168 AEN----HYGY---------------REEVVFLNVQRKYDLPVIHYKNHRR--------- 2199
Y Y ++ K D + +
Sbjct: 64 TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123
Query: 2200 -------ANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
+ WL + I P N +T + + G Y C+ +
Sbjct: 124 SVLLTCGLTDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKET 176
Query: 2253 GESF 2256
Sbjct: 177 SNPL 180
Score = 36.8 bits (84), Expect = 0.045
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFP-EDSGVYTCEAFNDEGESFSSCTLL 2262
++ W N +E+ +D L + + EDSG Y C ++
Sbjct: 28 NLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR 78
Query: 2263 VQVSWYKDGNPVSDDPA 2279
V + + D A
Sbjct: 79 VGSADDAKKDAAKKDDA 95
Score = 31.8 bits (71), Expect = 2.0
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 9/129 (6%)
Query: 293 VEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNT 352
VE+ + + W +G+EL + +V ++ DSG Y +
Sbjct: 17 VELTCPLDSDENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYTPAS 67
Query: 353 SGRDEGSFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVL 412
+ V +++ +L + + +L
Sbjct: 68 NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127
Query: 413 HCRGNHLPI 421
C I
Sbjct: 128 TCGLTDKTI 136
Score = 29.5 bits (65), Expect = 8.9
Identities = 11/110 (10%), Positives = 21/110 (19%), Gaps = 9/110 (8%)
Query: 1452 AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
W N + + L + S + D G Y
Sbjct: 23 LDSDENLKWEKNGQELPQKHDK---HLVLQDFS------EVEDSGYYVCYTPASNKNTYL 73
Query: 1512 TLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKD 1561
L RV ++ + A + + +
Sbjct: 74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 50.1 bits (119), Expect = 4e-07
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 19/121 (15%)
Query: 2092 AAPRFVIK------PQSAFCYEGQSVKFTCRVIAIATP--TLTWFHNNQELKQSVKFMKR 2143
A P + I G+ + C W + + + + +
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 2144 YAGD--------DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYK 2195
T I+ D+G Y A + ++ F+ V ++ P + +
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFVAFG 117
Query: 2196 N 2196
+
Sbjct: 118 S 118
Score = 49.4 bits (117), Expect = 6e-07
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFW---------FANDSIIDDSDTRVHKQLTMNSAS 1484
I + GE ++ + + D T+ ++ ++
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 1485 LVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
L + RSD G Y + + VRV ++P
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 45.9 bits (108), Expect = 1e-05
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 10/109 (9%)
Query: 268 KPRFVAPKIK-TPLKDIIIKAGKILNVEIQFIGEPPPEV--TWTIDGKELKTDSVRTTVT 324
P + + +P I + G+ L + E + W + + +
Sbjct: 2 DPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61
Query: 325 SIGYHTIVNTV-------NTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
+ + RSD G Y + + S V V E
Sbjct: 62 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 42.4 bits (99), Expect = 2e-04
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 2202 KYDVIWLHNNKEIKPSNDFAYSSVAHVH--------TLKIAEIFPEDSGVYTCEAFNDEG 2253
D W + + + + TL I + D G+YTC A +
Sbjct: 39 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 98
Query: 2254 ESFSSCTLLVQV 2265
+S + V
Sbjct: 99 TKKNSTFVRVHE 110
Score = 39.0 bits (90), Expect = 0.003
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 9/94 (9%)
Query: 693 TPLKDIIIKAGKILNVEIQFIGEPPPEV--TWTIDGKELKTDSVRTTVTSIGYHTIVNTV 750
+P I + G+ L + E + W + + + + +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 751 -------NTKRSDSGTYHLELRNTSGRDEGSFTI 777
RSD G Y + + S +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
Score = 31.2 bits (70), Expect = 1.3
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 2009 AAPRFVIK------PQSAFCYEGQSVKFTCRVIAIATPTLTW---FHNNQELKQSVKFMK 2059
A P + I G+ + C + + + +++ + +
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 2060 RYAGDDYTFYSSLRKLQIDRFSIQDT 2085
L L ID + D
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQ 86
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 49.6 bits (118), Expect = 6e-07
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTW---------FHNNQELKQSVKFMKRY 2144
++ EGQ++ C +L W + LK S + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 2145 AGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY 2203
+ + + + ++D G Y + + V + V Y +H R ++
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSHWRPLEH 119
Score = 41.5 bits (97), Expect = 3e-04
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 2202 KYDVIWLHNNKEI------KPSNDFAYSSVAHVH---TLKIAEIFPEDSGVYTCEAFNDE 2252
+ WL + + Y + H ++ + + +D GVY C ++D
Sbjct: 30 NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDS 89
Query: 2253 GESFSSCTLLVQVS 2266
+ ++V +
Sbjct: 90 VST-KEVKVIVLAT 102
Score = 35.7 bits (82), Expect = 0.034
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 1434 RDITVKAGEDFSIHVPFMAFPQPAAFWFA-NDSIIDDSDTRVHK-------QLTMNSASL 1485
ITV+ G+ ++ + W + I ++ V K + N S+
Sbjct: 9 ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSI 68
Query: 1486 VVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPP 1524
V N D G Y+ + T + V VL
Sbjct: 69 TVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGE 106
Score = 30.3 bits (68), Expect = 2.6
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL 2051
++ EGQ++ C +L W +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFT 42
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain
of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 50.7 bits (121), Expect = 7e-07
Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 34/177 (19%)
Query: 2107 EGQSVKFTCRVIAIATP-TLTWFHNNQEL-------KQSVKFMKRYAG------DDYTFV 2152
G +V T +A+ LTW H + + F + +
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 2153 INRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKN--------HRRANKYD 2204
I EDRG+Y +R + + + + V P+I+++ +
Sbjct: 73 IYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVE 131
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
+ + ++ ++ + + C+A N + +
Sbjct: 132 LKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
Score = 44.1 bits (104), Expect = 1e-04
Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 27/177 (15%)
Query: 1431 SGVRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDS------IIDDSDTRVHK------Q 1477
V ++ G + ++ + W + + T
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 1478 LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE--------NLHA 1529
L + +L + N + D G Y +++ + D + + V + P L
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMVSKPMIYWECSNATLTC 122
Query: 1530 DEFAGDSLTLYW----TPPRDNGGSEITNYVVEKKD-YNSTVWTKVSSYVTTPFVRV 1581
+ G + L R ++ + + +VS V
Sbjct: 123 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 41.0 bits (96), Expect = 0.001
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 32/144 (22%)
Query: 2179 VFLNVQRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFA--YSSVAHVHTLKIAEI 2236
V L + + N+ + + N K+ + F L+I +
Sbjct: 17 VTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNV 76
Query: 2237 FPEDSGVYTCEAFNDEGESF-------------------SSCTLL--------VQVSWYK 2269
ED G Y ++ + + S+ TL V++ Y+
Sbjct: 77 SKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 136
Query: 2270 DGNPVSDDPA---TYQFTQIGQTY 2290
+ +YQ+T + +
Sbjct: 137 GKEHLRSLRQKTMSYQWTNLRAPF 160
Score = 39.1 bits (91), Expect = 0.006
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 31/179 (17%)
Query: 2024 EGQSVKFTCRVIAIATP-TLTWFHNNQEL-------KQSVKFMKRYAGDDYTFYSSLRKL 2075
G +V T +A+ LTW H + + F + ++ L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGA-L 71
Query: 2076 QIDRFSIQDT------SFDRRQAAPRFVIK-----PQSAFCYEGQSVKFTCRVIAIATPT 2124
+I S +D + + ++ + +E + TC V+
Sbjct: 72 RIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVE 131
Query: 2125 LTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
L + + L+ + ++ R + +A N E+ +N
Sbjct: 132 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 36.0 bits (83), Expect = 0.071
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 299 GEPPPEVTWTIDGKELKTDSV---RTTVTSIGYH-TIVNTVNTKRSDSGTYHLELRNTSG 354
+ + +GK+ +SV R + I N + D G Y++ + + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNV---SKEDRGDYYMRMLHETE 93
Query: 355 RDEGSFTVTVLETISKTNTTTISS 378
+ T+ V E +SK S
Sbjct: 94 D-QWKITMEVYEMVSKPMIYWECS 116
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 48.9 bits (116), Expect = 7e-07
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 1326 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHT 1385
I+ S+TL W+ + + Y + + ++ V P
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSS----NLNVSEPRAV 62
Query: 1386 VGNLSEGEEYTFRVIAVNEAGNSEPG 1411
+ L Y V V PG
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPG 88
Score = 45.8 bits (108), Expect = 8e-06
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 5/86 (5%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFT 1285
S +S++L W N T Y + N +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSS----NLNVSEPRAV 62
Query: 1286 VHDLREGGKYEFRVIAINEAGPGKPS 1311
+ LR Y V + G P
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPG 88
Score = 44.3 bits (104), Expect = 3e-05
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 1042 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAY 1101
+ +I+ S +L WK ++ S T Y + G + V P
Sbjct: 8 AIQVFD-VTAVNISATSLTLIWKVSDNESSSNYT-YKIH----VAGETDSSNLNVSEPRA 61
Query: 1102 DVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPG 1147
+ GL ++ Y V P L T P P G
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH-------TPPVPSG 100
Score = 42.0 bits (98), Expect = 2e-04
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDV 647
T + + L WK N+ S T Y I + + + ++
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDS-----SNLNVSEPRA 61
Query: 648 KIPDLTKGQEYEFRVIAVNEAGPSEPS 674
IP L Y V V P
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGTPG 88
Score = 40.1 bits (93), Expect = 8e-04
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 74 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 133
+ NI+ +S L W+ D+ + Y + + VS
Sbjct: 8 AIQVFD-VTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSSNLN---VSEPRAV 62
Query: 134 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 172
L YN V V E P Q T P G
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQV-HTPPVPSG 100
Score = 37.4 bits (86), Expect = 0.007
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEIT-NYVVEKKDYNSTVWTKVSSYVTTPFV 1579
++ A + SLTL W + S T V + +S + V
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPRAV----- 62
Query: 1580 RVRNLAIGSTYEFRVMAENQYGLSKPA 1606
+ L + Y V P
Sbjct: 63 -IPGLRSSTFYNITVCPVLGDIEGTPG 88
Score = 37.0 bits (85), Expect = 0.010
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 174 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 233
+ T + + L W + S + Y I + + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSN----LNVSEPRAV 62
Query: 234 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 263
+P L+ Y V V G P
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQV 92
Score = 32.4 bits (73), Expect = 0.35
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Query: 488 PSPPEGPLEVSNVTKESCKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAGMTVSLFYD 547
+ N++ S L W+V D+ + Y I + + +
Sbjct: 8 AIQVFD-VTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSSNLNVSEP---RAV 62
Query: 548 VPRLIHRKEYLFRVKAVNSIGESDTLETTKTT 579
+P L Y V V E T
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQVHT 94
Score = 30.4 bits (68), Expect = 1.6
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 814 PDPPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW 859
I+ S+TL W+ + + Y + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSS 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 52.2 bits (125), Expect = 1e-06
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 2099 KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKM 2158
K + + G ++ C + +N+++ + + + ++
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLFFKKVQV 310
Query: 2159 EDRGEYIIRAENHYGYREEVVFLNVQ 2184
ED G Y A V L V
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVY 336
Score = 51.8 bits (124), Expect = 2e-06
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 1433 VRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR 1492
G+ +I + ++ + + +++ + L K Q
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGS--VSVRNGDLFFKKVQV 310
Query: 1493 SDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPEN 1526
DGG Y +T ++ ++V + +
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHH 344
Score = 46.0 bits (109), Expect = 1e-04
Identities = 16/60 (26%), Positives = 22/60 (36%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+W+ + E S S L ++ ED GVYTC A + S L V
Sbjct: 277 KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336
Score = 44.1 bits (104), Expect = 4e-04
Identities = 8/81 (9%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 299 GEPPPEVTWTIDGKELKTDSV-RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 357
+ +V + +++ + + G + D G Y + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV---QVEDGGVYTCYAMGETFNET 328
Query: 358 GSFTVTVLETISKTNTTTISS 378
S + V + T+++
Sbjct: 329 LSVELKVYNFTLHGHHDTLNA 349
Score = 37.1 bits (86), Expect = 0.069
Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 714 GEPPPEVTWTIDGKELKTDSV-RTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
+ +V + +++ + + G + D G Y + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV---QVEDGGVYTCYAMGETFNET 328
Query: 773 GSFTI 777
S +
Sbjct: 329 LSVEL 333
Score = 31.4 bits (71), Expect = 4.2
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 2016 KPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL 2051
K + + G ++ C + +N+++
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQV 287
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune system;
HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 50.1 bits (119), Expect = 2e-06
Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 19/183 (10%)
Query: 2015 IKPQSAFCYEGQSVKFTCRVIAIATPTLTW--FHNNQELK---QSVKFMKRYAGDD---Y 2066
++P+ AF G S+ C + + + +
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQP 66
Query: 2067 TFYSSLRKLQIDRFSIQDTSFDRRQAAPRFV-IKPQSAFCYEGQSVKFTCRVIA---IAT 2122
+ + + +F R P V + P + G++ +CRV A+
Sbjct: 67 VCFFRCARRTLQA-RGLIRTFQR----PDRVELMPLPPWQPVGENFTLSCRVPGAGPRAS 121
Query: 2123 PTLTWFHNNQEL--KQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVF 2180
TLT QEL + R G T + + + + RAE +F
Sbjct: 122 LTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLF 181
Query: 2181 LNV 2183
N
Sbjct: 182 ENS 184
Score = 41.2 bits (96), Expect = 0.002
Identities = 16/175 (9%), Positives = 40/175 (22%), Gaps = 30/175 (17%)
Query: 2098 IKPQSAFCYEGQSVKFTCRVIAIATPTLTW--FHNNQELKQSVKFMKRYAGDDYTFVINR 2155
++P+ AF G S+ C ++ G +
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR---------GLRWLARQLV 57
Query: 2156 TKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRR---------------- 2199
E + + + + ++ D + +
Sbjct: 58 DIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAG 117
Query: 2200 -ANKYDVIWLHNNKEI--KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFND 2251
+ L +E+ + + V T + + ++C A D
Sbjct: 118 PRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELD 172
Score = 33.9 bits (77), Expect = 0.40
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 2011 PRFV-IKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELKQ 2053
P V + P + G++ +CRV A+ TLT QEL +
Sbjct: 89 PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIR 135
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 48.8 bits (116), Expect = 4e-06
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 24/181 (13%)
Query: 2107 EGQSVKFTCRVIAIATPT-LTWFHNNQELKQSV--------------KFMKRYAGD-DYT 2150
G+SV A +TW N L V K KR Y+
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 2151 FVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKYDVIWLH- 2209
++ KMED G Y + + L + R+ + + N + L
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 2210 ----NNKEIKPSNDFAYSSVAHVHTLKIAEIFP-EDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+ + + ++++ L ++ YTC A N S ++ Q
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSN--LSFSVSAQ 189
Query: 2265 V 2265
Sbjct: 190 K 190
Score = 36.1 bits (83), Expect = 0.077
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 1459 FWFANDSIIDDSDTRVHKQLTM-NSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
I ++ + K+L S SL + N + D G YR Q+ ++ +R+
Sbjct: 45 PHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRI 104
Query: 1518 LDRPHPPE---NLHADEFAGDSLTLY 1540
L + + + + L L
Sbjct: 105 LRQLRNIQVTNHSQLFQNMTCELHLT 130
Score = 35.0 bits (80), Expect = 0.15
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 51/127 (40%)
Query: 2203 YDVIWLHNNKEIKPSN------------DFAYSSVAHVH---TLKIAEIFPEDSGVYTCE 2247
+ WL N + + + +L+++ + ED+G Y +
Sbjct: 29 NFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQ 88
Query: 2248 AFNDEGESFSSCTLL------------------------------------VQVSWYKDG 2271
SS TL V W G
Sbjct: 89 ISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALG 148
Query: 2272 NPVSDDP 2278
N +S P
Sbjct: 149 NTLSSQP 155
Score = 32.3 bits (73), Expect = 1.2
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 290 ILNVEIQFIGEPPPEVTWTIDGKELKT------DSVRTTVTSIGYHTIVNTV-------- 335
L +E GE +TW + L S VT+ +N
Sbjct: 17 TLPLEFP-AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLS 75
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETISKTNTT 374
N K D+G+Y ++ + S+T+ +L + T
Sbjct: 76 NLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT 114
Score = 31.9 bits (72), Expect = 1.4
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 11/67 (16%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+ W G L + T + + + S Y N
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTV-----------SWDPRISSEQDYTCIAENAVSNLSF 184
Query: 359 SFTVTVL 365
S + L
Sbjct: 185 SVSAQKL 191
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 48.9 bits (116), Expect = 5e-06
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 22/187 (11%)
Query: 586 DEPDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYIIQKKEKGNPYWMNALE---VPA 642
D D + + + + L W G+P T Y I+ K G W+ +
Sbjct: 3 DPSDLLQHVKFQSSNFENI-LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 643 NKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIMCKQRFLA-PKIKTPLKDIIIK 701
++ + + Y RV AV+ G S + L P + I
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVT------CIS 113
Query: 702 AGKILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYH--TIVNTVNTKRSDSGT 759
+ + + + P P DG L ++ + YH VN
Sbjct: 114 KVRSIQMIVH----PTPTPIRAGDGHRL---TLEDIFHDLFYHLELQVNRTYQMHLGGKQ 166
Query: 760 YHLELRN 766
E
Sbjct: 167 REYEFFG 173
Score = 48.2 bits (114), Expect = 8e-06
Identities = 29/208 (13%), Positives = 53/208 (25%), Gaps = 32/208 (15%)
Query: 76 PPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
P + ++ S N L W + + Y +E WV
Sbjct: 1 PEDPSDLLQHVKFQSSNFENILTWDSGPEGTPD--TVYSIEYKTYGERDWVAKKGCQRIT 58
Query: 132 TRAENLIE-----GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG 186
++ NL Y RV AV+ G S + + + P VT
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHT-----TLKPPDVTCIS 113
Query: 187 KD-HVDLEWTPP----KKDGGSPISQYIIEKKPKY-------GPWEKACIVPANITATSV 234
K + + P + G ++ I Y ++ +
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQM--HLGGKQREYEF 171
Query: 235 PDLKEGEEYEFRVIAVNKGGP--GEPSK 260
L E+ ++ + P
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYM 199
Score = 45.8 bits (108), Expect = 5e-05
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 28/206 (13%)
Query: 1222 PFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVE-KRERGGEWLRA---NNY 1277
P DP D + + ++ L W+ P T Y +E K +W+
Sbjct: 1 PEDPSDLLQHVKFQSSNFENI-LTWDSGPEGT--PDTVYSIEYKTYGERDWVAKKGCQRI 57
Query: 1278 PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI 1337
+ N TV Y RV A++ G + KP P V I
Sbjct: 58 TRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKP-----PDVTCI 112
Query: 1338 TKD-SVTLSWRPP----KHDGGARIK--------GYIVQKRKKGGDWVDANSVPVPNPVH 1384
+K S+ + P + G R+ Y ++ + + +
Sbjct: 113 SKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNR---TYQMHLGGKQREY 169
Query: 1385 TVGNLSEGEEYTFRVIAVNEAGNSEP 1410
L+ E+ ++ + E
Sbjct: 170 EFFGLTPDTEFLGTIMILVPTWAKES 195
Score = 44.3 bits (104), Expect = 2e-04
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 28/206 (13%)
Query: 491 PEGPLEV-SNVTKES----CKLSWRVPVDDGGAPILHYIIEKMDISRGTWSDAG---MTV 542
PE P ++ +V +S L+W G P Y IE W
Sbjct: 1 PEDPSDLLQHVKFQSSNFENILTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRIT 58
Query: 543 SLFYDVPRLI--HRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVK-DW 599
++ + Y RV AV++ G S T T + + ++ +P P V
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKP-----PDVTCIS 113
Query: 600 GEDFVDLAWKPPL----NDGGSPITDYIIQKKEKGN-PYWMN---ALEVPANKTDVKIPD 651
+ + P G +T I + +N + + + + +
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFG 173
Query: 652 LTKGQEYEFRVIAVNEAGP--SEPSD 675
LT E+ ++ + S P
Sbjct: 174 LTPDTEFLGTIMILVPTWAKESAPYM 199
Score = 42.0 bits (98), Expect = 9e-04
Identities = 24/132 (18%), Positives = 37/132 (28%), Gaps = 13/132 (9%)
Query: 1519 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVS--SYVTT 1576
D +++ L W G+ T Y +E K Y W +T
Sbjct: 3 DPSDLLQHVKFQSS-NFENILTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 1577 PF--VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPK-GVDST 1633
+ V + Y RV A + G S +T +H P S
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQH-----TTLKPPDVTCISK 114
Query: 1634 EDSISLVWSKPR 1645
SI ++
Sbjct: 115 VRSIQMIVHPTP 126
Score = 35.4 bits (81), Expect = 0.13
Identities = 31/198 (15%), Positives = 51/198 (25%), Gaps = 43/198 (21%)
Query: 395 PDHLKNLW----NMKKSLH--PVLHCRGNHLPIMEAVKSRYIIEMAEYGLDNWKTVPG-- 446
D L+++ N + L + Y IE YG +W G
Sbjct: 5 SDLLQHVKFQSSNFENILTWDSGPEGTPDT---------VYSIEYKTYGERDWVAKKGCQ 55
Query: 447 -----FCPKEFFTVKGLTEGKKYVFRIRTENMYGAS-----EPLDPLFPDKPSPPEGPLE 496
C TV+ + Y R+ + G S + L PP+
Sbjct: 56 RITRKSCN---LTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCI 112
Query: 497 VSNVTKESCKLSWRVPV-----DDGGAPILHYIIEKMD-----ISRGTWSDAGMTVSLFY 546
S ++ DG L I + T+ Y
Sbjct: 113 SKV---RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREY 169
Query: 547 DVPRLIHRKEYLFRVKAV 564
+ L E+L + +
Sbjct: 170 EFFGLTPDTEFLGTIMIL 187
Score = 34.3 bits (78), Expect = 0.31
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLS--SFVRSPAYDVFGLETNR--QYRFRV 1116
L+W G+P T Y +E W + + ++ N Y RV
Sbjct: 22 LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCNLTVETGNLTELYYARV 79
Query: 1117 RAENQYGVSEPLELDNSITAKFPF--TVPDPPG 1147
A + G S D T PP
Sbjct: 80 TAVSAGGRSATKMTDR----FSSLQHTTLKPPD 108
Score = 31.6 bits (71), Expect = 2.1
Identities = 30/210 (14%), Positives = 57/210 (27%), Gaps = 48/210 (22%)
Query: 1143 PDPPGQPQIVDWDTNNA--TLMWDRPRTDGGSKIQGYKVEFRSTR-------------TA 1187
DP Q V + ++N L WD G+ Y +E+++ T
Sbjct: 2 EDPSDLLQHVKFQSSNFENILTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 1188 TDCGL------GYQQCHADVGQTPHG---WWLQDSRIQGRIQSPFDPPDAPSQPEVTGYS 1238
C L + +A V G R + PPD +V
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV---- 115
Query: 1239 PSSVSLAWNPP----ANHGGRPIT--------GYYVEKRERGGEWLRANNYPTTNLNFTV 1286
S+ + +P G +T Y++E + + +
Sbjct: 116 -RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTY---QMHLGGKQREYEF 171
Query: 1287 HDLREGGKYEFRVIAINEAGPGK--PSKPT 1314
L ++ ++ + + P
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYMCR 201
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin
type 3 fold, membrane and SOL glycosylation, immune
system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB:
3di3_B* 3di2_B*
Length = 223
Score = 48.3 bits (114), Expect = 8e-06
Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 1498 YRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAG-DSLTLYWTPP-RDNGGSEI 1552
+ + G + + + +P P +L G + + + ++
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146
Query: 1553 TNYVVE-KKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
+ V +++ + WT V+ T + R L + YE +V
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 47.1 bits (111), Expect = 2e-05
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 6/127 (4%)
Query: 557 YLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGE-DFVDLAWKPP-LND 614
+ + +GE T + +P+AP +V + + + L
Sbjct: 85 LIGKSNICVKVGEK---SLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQK 141
Query: 615 GGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIA-VNEAGPSEP 673
+ + + +++ + + + + K + L YE +V + +
Sbjct: 142 KYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFW 201
Query: 674 SDASDII 680
S+ S
Sbjct: 202 SEWSPSY 208
Score = 46.3 bits (109), Expect = 4e-05
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVE-KYESATGFWSKLSSFVRS 1098
KP P V +++ L + + V + E W+ ++
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 1099 PAYDVFGLETNRQYRFRVRAENQYGVS 1125
L+ Y +VR+ +
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFK 198
Score = 44.8 bits (105), Expect = 1e-04
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 18/162 (11%)
Query: 1152 VDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQ 1211
V+ ++ T ++ P + + + E C + +T +
Sbjct: 32 VNGSQHSLTCAFEDPDVNTTN----LEFEICGALVEVKCLNFRKLQEIYFIETKKFLLIG 87
Query: 1212 DSRIQGRIQS------PFDP-----PDAPSQPEVTGYSPS-SVSLAWNPPA-NHGGRPIT 1258
S I ++ D P+AP V + + +N +
Sbjct: 88 KSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVL 147
Query: 1259 GYYVE-KRERGGEWLRANNYPTTNLNFTVHDLREGGKYEFRV 1299
+ V ++E+ N +T L L+ YE +V
Sbjct: 148 MHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 43.6 bits (102), Expect = 3e-04
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 18/183 (9%)
Query: 1224 DPPDAP----SQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPT 1279
+ D SQ EV G S++ A+ P + + + + L
Sbjct: 18 ELDDYSFSCYSQLEVNGSQ-HSLTCAFEDPDVNTTN--LEFEICGALVEVKCLNFRKLQE 74
Query: 1280 TNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI-T 1338
GK V ++ K T IV KP+ P V
Sbjct: 75 I-YFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIV-------KPEAPFDLSVVYREG 126
Query: 1339 KDSVTLSWRPPKH-DGGARIKGYIVQ-KRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYT 1396
+ +++ ++ + V +++K + ++ L Y
Sbjct: 127 ANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYE 186
Query: 1397 FRV 1399
+V
Sbjct: 187 IKV 189
Score = 39.4 bits (91), Expect = 0.008
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 173 RPDRPGQPTVTDW-GKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANIT 230
+P+ P +V G + + + + + + + + + + + ++
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 231 ATSVP-DLKEGEEYEFRVIA-VNKGGPGEPSKASAPVT 266
T + L+ YE +V + + G S+ S
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYY 209
Score = 33.6 bits (76), Expect = 0.52
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 487 KPSPPEGPLEVSNVTKESCKLSWRVP-VDDGGAPILHYIIE-KMDISRGTWSD-AGMTVS 543
KP P V +++ + +L + + + + W+ +
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 544 LFYDVPRLIHRKEYLFRVKA 563
L +L Y +V++
Sbjct: 172 LTLLQRKLQPAAMYEIKVRS 191
Score = 30.2 bits (67), Expect = 6.3
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 73 IPSPPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 131
P P + + + +L + V + ++S T
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 132 TR--AENLIEGHDYNFRVKA 149
L Y +V++
Sbjct: 172 LTLLQRKLQPAAMYEIKVRS 191
Score = 29.8 bits (66), Expect = 9.3
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 10/135 (7%)
Query: 1536 SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVM 1595
SLT + P N + + + K+ F+ + + V
Sbjct: 38 SLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIY---FIETKKFLLIGKSNICVK 94
Query: 1596 AENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRH-DGGSPIQR 1654
+ K +K + PFD+ + + ++ +
Sbjct: 95 VGEKSLTCKKIDLTTIVKPEAPFDLSVVY------REGANDFVVTFNTSHLQKKYVKVLM 148
Query: 1655 YIVEKRLISDDKWIK 1669
+ V R D+
Sbjct: 149 HDVAYRQEKDENKWT 163
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase,
transferase-transferase inhibitor COM; HET: 42Q; 1.55A
{Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A*
Length = 359
Score = 49.2 bits (117), Expect = 9e-06
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 13/142 (9%)
Query: 1692 ILEEIGTGAFGVVHRCR-----ERKTGNIFAAKFIPVSHNL-EKELIRKEIDIMNQL-HH 1744
+ + +G GAFG V + T A K + E + E+ I+ + HH
Sbjct: 26 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 85
Query: 1745 PKLINLHDA-FEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMH 1803
++NL A + +++I EF G L + + E + Y + +
Sbjct: 86 LNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL-----RSKRNEFVPYKTKGARFRQGKD 140
Query: 1804 EKNIIHLDVKPENIMCQTRNST 1825
I +D+K + S+
Sbjct: 141 YVGAIPVDLKRRLDSITSSQSS 162
Score = 42.6 bits (100), Expect = 0.001
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 1789 INYMRQVCEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDPNEVVKIST 1848
I Y QV + ++ + + IH D+ NI+ VK+ DFGLA + + +
Sbjct: 196 ICYSFQVAKGMEFLASRKCIHRDLAARNIL--LSEKNVVKICDFGLARDIYKDP-DYVRK 252
Query: 1849 GTAEF----AAPEIVEREPVGFYTDMWAVGVLAY 1878
G A APE + +D+W+ GVL +
Sbjct: 253 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW 286
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine,
leukemia inhibitory factor, cytokine receptor; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 109
Score = 45.8 bits (108), Expect = 1e-05
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 1520 RPHPPENLHADEFAGDS--LTLYWTPPR--DNGGSEITNYVVEKKDYNSTVWTKVSSYVT 1575
+P PPEN+ A + L + W P + S + + + W V
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66
Query: 1576 TPFVRVRNLAIGSTYEFRVMAENQY 1600
T + + G Y +V A++
Sbjct: 67 TAHT-ITDAYAGKEYIIQVAAKDNE 90
Score = 44.6 bits (105), Expect = 2e-05
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 588 PDAPEKPTVK--DWGEDFVDLAWKPP--LNDGGSPITDYIIQKKEKGNPYWMNALEVPAN 643
PD PE + +++ W+ P D S + ++ + W + +N
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH--VELSN 65
Query: 644 KTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSD 675
T I D G+EY +V A + SD
Sbjct: 66 GTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96
Score = 41.9 bits (98), Expect = 2e-04
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 1041 KPSPPQGP-LDVSDITPESCSLSWKPP--LDDGGSPITNYVVEKYESATGFWSKLSSFVR 1097
KP PP+ P ++W+ P D S + + W +
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHV-ELSN 65
Query: 1098 SPAYDVFGLETNRQYRFRVRAENQY 1122
A+ + ++Y +V A++
Sbjct: 66 GTAHTITDAYAGKEYIIQVAAKDNE 90
Score = 40.0 bits (93), Expect = 9e-04
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 1313 PTDIVQCKEQKRKPDPPEAPKVDRITKDS--VTLSWRPP--KHDGGARIKGYIVQ-KRKK 1367
P V KPDPPE + + + ++W+ P D + + ++ +
Sbjct: 2 PLGSV-------KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLI 54
Query: 1368 GGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNE 1404
W HT+ + G+EY +V A +
Sbjct: 55 LDQWQHVE--LSNGTAHTITDAYAGKEYIIQVAAKDN 89
Score = 38.4 bits (89), Expect = 0.004
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 173 RPDRPGQPTVT--DWGKDHVDLEWTPP--KKDGGSPISQYIIEKKPKYGPWEKACIVPAN 228
+PD P +++ W P D S ++ + +P + + +N
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD-QWQHVELSN 65
Query: 229 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 269
TA ++ D G+EY +V A + G S S P
Sbjct: 66 GTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATP 105
Score = 38.1 bits (88), Expect = 0.004
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 487 KPSPPEGP-LEVSNVTKESCKLSWRVP--VDDGGAPILHYIIEKMDISRGTWSDAGMTVS 543
KP PPE +++W+ P D + L + + + W ++
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66
Query: 544 LFYDVPRLIHRKEYLFRVKA 563
+ + KEY+ +V A
Sbjct: 67 TAHTITDAYAGKEYIIQVAA 86
Score = 36.5 bits (84), Expect = 0.016
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 1226 PDAPSQPEVTGY--SPSSVSLAWNPPANHGGRP--ITGYYVE-KRERGGEWLRANNYPTT 1280
PD P +P + + W P+ +++ + +W T
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 1281 NLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
T+ D G +Y +V A + G S
Sbjct: 68 A--HTITDAYAGKEYIIQVAAKDN-EIGTWS 95
Score = 33.8 bits (77), Expect = 0.12
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 74 PSPPEGP-LKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMGDVSGT 130
P PPE +P + W+ P D + L + + + +W + +GT
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 131 YTRAENLIEGHDYNFRVKAVNK 152
+ G +Y +V A +
Sbjct: 68 AHTITDAYAGKEYIIQVAAKDN 89
Score = 29.6 bits (66), Expect = 4.5
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 813 KPDPPEAPKVDRITKDS--VTLSWRPP--KHDGGARIKGYIVQ-KRKKGGDW 859
KPDPPE + + + ++W+ P D + + ++ + W
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW 58
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 47.5 bits (112), Expect = 1e-05
Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 49/205 (23%)
Query: 2107 EGQSVKFTCRV-------IAIATPTLTWF-------------HNNQELKQSVKFMKRYA- 2145
EG V C + + WF NN + + + R+
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 2146 -GD----DYTFVINRTKMEDRGEYIIRAEN----HYGYREEVVFLNVQRKYDLPVIHYKN 2196
GD + + I +MED G Y R E Y Y++ + L V + P IH+
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 2197 HRRAN---------------KYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDS 2241
+ + + + P + L + +
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD----PETTRSSELTLTPRPEDHG 189
Query: 2242 GVYTCEAFNDEGESFSSCTLLVQVS 2266
TC+ + + T+ + VS
Sbjct: 190 TNLTCQMKRQGAQVTTERTVQLNVS 214
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 44.8 bits (105), Expect = 2e-05
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 2108 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYIIR 2167
G +V TC + W HN++ + + +D+ + +++E G Y+
Sbjct: 21 GTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 2168 AEN 2170
Sbjct: 79 PRG 81
Score = 39.4 bits (91), Expect = 0.002
Identities = 14/59 (23%), Positives = 20/59 (33%)
Query: 2204 DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
+++W HN+K I D H E SG Y C + E + L
Sbjct: 35 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 93
Score = 31.7 bits (71), Expect = 0.64
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 2025 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSIQD 2084
G +V TC + W HN++ + + +D+ L + FS +
Sbjct: 21 GTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDH--------LSLKEFSELE 70
Query: 2085 TS 2086
S
Sbjct: 71 QS 72
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex,
rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 47.6 bits (113), Expect = 2e-05
Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 45/227 (19%)
Query: 1641 WSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT----SLKYTSSVYDHYDILEEI 1696
++ + I +Y+ + R++ + + SL I + +
Sbjct: 39 HARIGEEKARNILKYLSDLRVVQNRQKDYEGSTFTFIGLSLYSLHRLVRSGKVDAIGKLM 98
Query: 1697 GTGAFGVVHRCRERKTGNIFAAKFIPVSH------------------NLEKELIRKEIDI 1738
G G V C + KF V H L R E
Sbjct: 99 GEGKESAVFNCY-SEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 157
Query: 1739 MNQLHH---PKLINLHDAFEDDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQV 1795
+ +L PK+ ++ E + EL ++ + + +
Sbjct: 158 LQKLQGLAVPKVYAWEG-------NAVLMELIDAKEL------YRVRVENPD--EVLDMI 202
Query: 1796 CEAVKHMHEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PN 1841
E V + + I+H D+ N++ + +IDF + ++
Sbjct: 203 LEEVAKFYHRGIVHGDLSQYNVLVSEE---GIWIIDFPQSVEVGEEG 246
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 47.2 bits (112), Expect = 3e-05
Identities = 23/178 (12%), Positives = 42/178 (23%), Gaps = 25/178 (14%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWF--HNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEY 2164
+ + V C+ + H L + + F I G+Y
Sbjct: 20 KEKQVTICCQ----GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 75
Query: 2165 IIRAENHYGY--REEVVFLNVQRKYDLPVI------HYKNH-------RRANKYDVIWLH 2209
+ ++ L V YD P + + R + L
Sbjct: 76 SCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLL 135
Query: 2210 NNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE-SFSSCTLLVQVS 2266
A + + G Y C + SF S + + V+
Sbjct: 136 KEGRSSHVQRGYGKVQA---EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 190
Score = 38.0 bits (88), Expect = 0.023
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 2207 WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
LH + + + I ++ +G Y+C E S S L + V+
Sbjct: 38 QLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 97
Query: 2267 WYKDGNPVSDDP 2278
D +S P
Sbjct: 98 EMYDTPTLSVHP 109
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 46.0 bits (109), Expect = 3e-05
Identities = 24/176 (13%), Positives = 43/176 (24%), Gaps = 21/176 (11%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+ + V C+ A H L + + F I G+Y
Sbjct: 17 KEKQVTICCQGNYGAV--EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 74
Query: 2167 RAENHYGYRE--EVVFLNVQRKYDLPVI------HYKNHRR-------ANKYDVIWLHNN 2211
+ E ++ L V YD P + + + + L
Sbjct: 75 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKE 134
Query: 2212 KEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE-SFSSCTLLVQVS 2266
A + + G Y C + SF S + + V+
Sbjct: 135 GRSSHVQRGYGKVQA---EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187
Score = 42.1 bits (99), Expect = 6e-04
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 2207 WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
LH + + + I ++ +G Y+C E S S L + V+
Sbjct: 35 QLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 94
Query: 2267 WYKDGNPVSDDP 2278
D +S P
Sbjct: 95 EMYDTPTLSVHP 106
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 46.0 bits (109), Expect = 3e-05
Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 22/180 (12%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G SV C+ A + + + F I + G Y
Sbjct: 18 WGNSVTIWCQGTLEAR--EYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRC 75
Query: 2167 RAENHYGYRE--EVVFLNVQRKYDLPVIHYKNH-------------RRANKYDVIWLHNN 2211
+ G+ + + + L + Y P + + + D L
Sbjct: 76 YYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKE 135
Query: 2212 KEIKPSNDFAYSSVAHVH--TLKIAEIFPEDSGVYTCEAFNDEG---ESFSSCTLLVQVS 2266
+ P A H ++ + G Y C + + S S L + VS
Sbjct: 136 RAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195
Score = 29.8 bits (67), Expect = 7.7
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 1454 PQPAA-FWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGF--DT 1510
A + + D + + N A + + G+YR ++P G+ +
Sbjct: 29 TLEAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS 87
Query: 1511 ATLHVRVLDRPHPPENLHADE----FAGDSLTL 1539
L + + P L A +G S+TL
Sbjct: 88 DPLELVMTGAYSKP-TLSALPSPLVTSGKSVTL 119
Score = 29.8 bits (67), Expect = 9.0
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 5/141 (3%)
Query: 622 YIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPSDASDIIM 681
Y + K+E P+ P NK IP +T+ +R + G S+PSD +++
Sbjct: 35 YRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV- 93
Query: 682 CKQRFLAPKIKTPLKDIIIKAGKILNVEIQFIGEPPPE-VTWTIDGKELKTDSVRTTVTS 740
+ P + + L ++ +GK +V + P + + +R+ +
Sbjct: 94 MTGAYSKPTL-SALPSPLVTSGK--SVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGA 150
Query: 741 IGYHTIVNTVNTKRSDSGTYH 761
+ GTY
Sbjct: 151 QQHQAEFPMSPVTSVHGGTYR 171
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 45.6 bits (108), Expect = 4e-05
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 23/181 (12%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G SV C+ A + + F I G Y
Sbjct: 18 RGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75
Query: 2167 RAENHYGYRE--EVVFLNVQRKYDLPVI------HYKNHRR-----ANKYDVIWLHNNKE 2213
+ G+ E + + L V Y+ P + + ++ +E
Sbjct: 76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEE 135
Query: 2214 IKPSNDFAYSSVAHVHTLKIAE--IFP---EDSGVYTCEAFNDEG---ESFSSCTLLVQV 2265
+ S A + P + C S S L + V
Sbjct: 136 GDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195
Query: 2266 S 2266
S
Sbjct: 196 S 196
Score = 38.7 bits (90), Expect = 0.009
Identities = 13/76 (17%), Positives = 25/76 (32%)
Query: 2203 YDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLL 2262
L +P + + I + +G Y C ++ G S S L
Sbjct: 32 AQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE 91
Query: 2263 VQVSWYKDGNPVSDDP 2278
+ V+ + + +S P
Sbjct: 92 LVVTGFYNKPTLSALP 107
Score = 30.6 bits (69), Expect = 4.3
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 6/149 (4%)
Query: 615 GGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSEPS 674
G +Y + K+ P+ P NK IP +T+ +R + AG SEPS
Sbjct: 28 GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS 87
Query: 675 DASDIIMCKQRFLAPKIKTPLKDIIIKAGKILNVEIQ-FIGEPPPEVTWTIDGKELKTDS 733
D ++++ + P + + L ++ +G+ NV +Q T +G + +
Sbjct: 88 DPLELVV-TGFYNKPTL-SALPSPVVTSGE--NVTLQCGSRLRFDRFILTEEGDHKLSWT 143
Query: 734 VRTTVTSIGYHTIVNTV-NTKRSDSGTYH 761
+ + +T G + V S
Sbjct: 144 LDSQLTPSGQFQALFPVGPVTPSHRWMLR 172
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 46.1 bits (109), Expect = 5e-05
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVT--SIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 356
G P EV WT ++ + TT + + +T+ + + ++ R +
Sbjct: 142 GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE 201
Query: 357 EGSFTVTVLET 367
+ + + E
Sbjct: 202 NHTAELVIPEL 212
Score = 42.3 bits (99), Expect = 9e-04
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVT--SIGYHTIVNTVNTKRSDSGTYHLELRNTSGRD 771
G P EV WT ++ + TT + + +T+ + + ++ R +
Sbjct: 142 GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE 201
Query: 772 EGSFTIV 778
+ +V
Sbjct: 202 NHTAELV 208
Score = 41.5 bits (97), Expect = 0.001
Identities = 21/196 (10%), Positives = 54/196 (27%), Gaps = 40/196 (20%)
Query: 2108 GQSVKFTCRV-----IAIATPTLTWFHNNQEL-------KQSVKFMKRYAG--------- 2146
G ++ C+ + +A + W ++ + + Y
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 2147 --DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY- 2203
+ I K++D G Y ++ G + + + V Y+
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 2204 ------------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIA---EIFPEDSGVYTCEA 2248
+VIW ++ ++ +S + I + ++ C
Sbjct: 135 ELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF 194
Query: 2249 FNDEGESFSSCTLLVQ 2264
+ E + L++
Sbjct: 195 RRLDPEENHTAELVIP 210
Score = 37.7 bits (87), Expect = 0.030
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN-PAGFDTATLHVRVLDRPHPPENLHAD 1530
+ QL++ +A+L + + + D G YR + A + T+ V + +
Sbjct: 69 RLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKV-NAPYNKINQRILVV 127
Query: 1531 EFAGDSLTLY----WTPP-----RDNGGSEITNYVVEKKDYNSTVWTKVSSYVT 1575
+ L P + ++ V+S +
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
Score = 36.9 bits (85), Expect = 0.041
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 12/126 (9%)
Query: 1408 SEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSII 1467
S G + V+ ++ + + + +P+ W ++D +
Sbjct: 100 SYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV 157
Query: 1468 DDSDTRVHKQLTMN-----SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP- 1521
T +++L + + + + + T + + + P
Sbjct: 158 LSGKTTTTNSKREEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPEENHTAELVIPELPL 214
Query: 1522 -HPPEN 1526
HPP
Sbjct: 215 AHPPNE 220
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor,
sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 45.5 bits (107), Expect = 6e-05
Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 24/159 (15%)
Query: 1196 QCHADV--GQTPHGWWLQDSRIQGRIQSP---FDP-----PDAPSQPEVTGYSPSSVSLA 1245
CH DV + +Q + G+ F P P VT ++
Sbjct: 61 TCHMDVFHFMADDIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVT--FSGQYQIS 118
Query: 1246 WNPP----ANHGGRPITGYYVEKRERGGEWLRAN-----NYPTTNLNFTVHDLREGGKYE 1296
W A + + Y ++ R RG W + + + +++ + R+ YE
Sbjct: 119 WRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYE 178
Query: 1297 FRVIAINEAGP---GKPSKPTDIVQCKEQKRKPDPPEAP 1332
+V A G G S+ +D V + Q +
Sbjct: 179 LQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEHHHH 217
Score = 43.2 bits (101), Expect = 4e-04
Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 14/109 (12%)
Query: 1498 YRLQLKNPAG---FDTATLHVRVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITN 1554
+ +Q+ + +G + + + +P PP ++ + W ++ +
Sbjct: 75 FSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTF--SGQYQISWRSDYEDPAFYMLK 132
Query: 1555 ----YVVEKKDYNST-----VWTKVSSYVTTPFVRVRNLAIGSTYEFRV 1594
Y ++ ++ +S + + S+YE +V
Sbjct: 133 GKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQV 181
Score = 42.1 bits (98), Expect = 0.001
Identities = 32/212 (15%), Positives = 54/212 (25%), Gaps = 31/212 (14%)
Query: 1237 YSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWL--------RANNYPTTNLNFTVHD 1288
+V H + + E E + T + V
Sbjct: 9 DYLQTVICILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFH 68
Query: 1289 LREGGKYEFRVIAINEAGPGKPS--KPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSW 1346
+ ++ + + + + KP PP V +SW
Sbjct: 69 FMADDIFSVQITDQSGQYSQECGSFLLAESI-------KPAPPFDVTV--TFSGQYQISW 119
Query: 1347 RPP----KHDGGARIKGYIVQKRKKGGDWVDAN-----SVPVPNPVHTVGNLSEGEEYTF 1397
R Y +Q R +G W + SV + + Y
Sbjct: 120 RSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYEL 179
Query: 1398 RVIAVNEAGNSEPGKQSG---PVIVEEQPNKP 1426
+V A G+S G S PVI + Q +
Sbjct: 180 QVRAGPMPGSSYQGTWSEWSDPVIFQTQSEEL 211
Score = 40.5 bits (94), Expect = 0.003
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 32/129 (24%)
Query: 1041 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE----------SATGFWS 1090
KP+PP DV+ +SW+ +D + ++ YE + +
Sbjct: 100 KPAPPF---DVTVTFSGQYQISWRSDYEDPAFYMLKGKLQ-YELQYRNRGDPWAVSPRRK 155
Query: 1091 KLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGV---------SEPLELDNSITAKFPFT 1141
+S RS + + Y +VRA G S+P+ T
Sbjct: 156 LISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQ---------T 206
Query: 1142 VPDPPGQPQ 1150
+ +
Sbjct: 207 QSEELKEHH 215
Score = 38.6 bits (89), Expect = 0.014
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 15/142 (10%)
Query: 545 FYDVPRLIHRKEYLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDWGEDFV 604
DV + + ++ + + + P P TV G+
Sbjct: 63 HMDVFHFMADDIFSVQITDQSGQYSQECGSFLLAESIK-----PAPPFDVTVTFSGQ--Y 115
Query: 605 DLAWKPPLNDGGSPITD----YIIQKKEKGNPYWM----NALEVPANKTDVKIPDLTKGQ 656
++W+ D + Y +Q + +G+P+ + + V + + + K
Sbjct: 116 QISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDS 175
Query: 657 EYEFRVIAVNEAGPSEPSDASD 678
YE +V A G S S+
Sbjct: 176 SYELQVRAGPMPGSSYQGTWSE 197
Score = 35.9 bits (82), Expect = 0.10
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 36/206 (17%)
Query: 85 NITKSSCNLEWRAPRDDGGTDILHY----------VVEKMDMETGRWVPMGDVSGTYTRA 134
+ C T L + + +
Sbjct: 10 YLQTVIC--ILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVF 67
Query: 135 ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG--RPDRPGQPTVTDWGKDHVDL 192
+ D F V+ ++ G+ + +P P TVT +
Sbjct: 68 HFMA---DDIFSVQITDQSGQY-----SQECGSFLLAESIKPAPPFDVTVTF--SGQYQI 117
Query: 193 EWTPPKKDGGSPIS----QYIIEKKPKYGPWEKA---CIVPANITATSVP--DLKEGEEY 243
W +D + QY ++ + + PW + ++ + + S+ + ++ Y
Sbjct: 118 SWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSY 177
Query: 244 EFRVIAVNKGGP---GEPSKASAPVT 266
E +V A G G S+ S PV
Sbjct: 178 ELQVRAGPMPGSSYQGTWSEWSDPVI 203
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 112
Score = 43.4 bits (102), Expect = 7e-05
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 2093 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS----------VKFMK 2142
R V + Y+G+ F+ + I TWF N +ELK + +++
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 2143 RYAGDDYTFVINRTKMEDRGEYI 2165
G + +++ K +D G +
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALV 88
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 273 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 330
++ L+D+ + G+ + ++++ + TW ++G+ELK++ V
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLS----TIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 331 IVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+ + L L +D G
Sbjct: 64 RI------EQKGLQHRLILHAVKHQDSG 85
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 688 APKIKTPLKDIIIKAGK--ILNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHT 745
++ L+D+ + G+ + ++++ + TW ++G+ELK++ V
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLS----TIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 746 IVNTVNTKRSDSGTYHLELRNTSGRDEG 773
+ + L L +D G
Sbjct: 64 RI------EQKGLQHRLILHAVKHQDSG 85
Score = 38.0 bits (88), Expect = 0.005
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 15/71 (21%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVA----------HVHTLKIAEIFPEDSGVY-TCEAFNDEG 2253
W N +E+K + H L + + +DSG +
Sbjct: 38 GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQ- 96
Query: 2254 ESFSSCTLLVQ 2264
S L +Q
Sbjct: 97 ---DSAALTIQ 104
Score = 36.5 bits (84), Expect = 0.017
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 2252 EGESFS-SCTL--LVQVSWYKDGNPVSDD---------PATYQFTQIGQTYKMKILSTTL 2299
+GE S L ++Q +W+ +G + + Y+ Q G +++ + +
Sbjct: 22 DGEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH 81
Query: 2300 DDVGQYSAQM-GGIIAAFSLNV 2320
D G G+ + +L +
Sbjct: 82 QDSGALVGFSCPGVQDSAALTI 103
Score = 35.7 bits (82), Expect = 0.031
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 2010 APRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQS-VKFMKRYAGDDYTF 2068
R V + Y+G+ F+ + I TWF N +ELK + + Y
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 2069 YSSLRK--LQIDRFSIQDT 2085
+ L + QD+
Sbjct: 66 EQKGLQHRLILHAVKHQDS 84
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Length = 218
Score = 44.9 bits (106), Expect = 1e-04
Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
SVK C+ I A T N ++ + +K + D FVI+ G Y
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC 81
Query: 2167 RAENHYGY--REEVVFLNVQRKYDLPVIHYKN--------------HRRANKYDVIWLHN 2210
+ + + + L V Y P + +D L
Sbjct: 82 QYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAK 141
Query: 2211 NKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE---SFSSCTLLVQVS 2266
E+ + S H + + SG+Y C + + SF S L + V+
Sbjct: 142 EGELSLPQ---HQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT 197
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 44.0 bits (104), Expect = 1e-04
Identities = 24/178 (13%), Positives = 46/178 (25%), Gaps = 32/178 (17%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+ V C+ P + + + D I K G Y
Sbjct: 21 LEKPVTLRCQ----GPPGVDLYRLEKLSSSRY-------QDQAVLFIPAMKRSLAGRYRC 69
Query: 2167 RAENHYGYRE--EVVFLNVQRKYDLPVIHYKNHRR-------------ANKYDVIWLHNN 2211
+N + + + L + P + + +D L+
Sbjct: 70 SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKE 129
Query: 2212 KEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEG---ESFSSCTLLVQVS 2266
+ P + + I + SG Y C +F+ S S L + V+
Sbjct: 130 GDPAPYK---NPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVVT 184
Score = 34.8 bits (80), Expect = 0.16
Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 16/125 (12%)
Query: 2207 WLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
L + + I + +G Y C N S S L + +
Sbjct: 39 RLEKLSSSRYQDQAVLF---------IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVAT 89
Query: 2267 WYKDGNPVSDDPATY-------QFTQIGQTYKMKILSTTLDDVGQYSAQMGGIIAAFSLN 2319
+S P + + D Y A+F +
Sbjct: 90 GVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPII 149
Query: 2320 VVKES 2324
V +
Sbjct: 150 TVTAA 154
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 45.8 bits (109), Expect = 2e-04
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 1756 DDDEMVLIFEFLSGGELFERITAPDYKMSEAEVINYMRQVCEAVKHMHEKNIIHLDVKPE 1815
D D ++ +++G + I + ++ ++ E V +H+ ++IH D+
Sbjct: 410 DLDNKRIMMSYINGKLAKDVIE---------DNLDIAYKIGEIVGKLHKNDVIHNDLTTS 460
Query: 1816 NIMCQTRNSTNVKMIDFGLATKLDPNE 1842
N + + +IDFGL + +E
Sbjct: 461 NFIFDKD----LYIIDFGLGKISNLDE 483
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP,
manganese, transferase; HET: ADP; 1.89A {Archaeoglobus
fulgidus} PDB: 1zp9_A* 1ztf_A*
Length = 258
Score = 43.1 bits (101), Expect = 5e-04
Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 1696 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHH-----PKLINL 1750
I T F + G+ KE + + P+
Sbjct: 84 IETSEFDKMDEYLY---GDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTY 140
Query: 1751 HDAFEDDDEMVLIFEFLSGGELFE-RITAPDYKMSEAEVINYMRQVCEAVKHMHEK-NII 1808
VL+ EF+ EL + ++ E +V V E VK ++++ ++
Sbjct: 141 MK-------NVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELV 193
Query: 1809 HLDVKPENIMCQTRNSTNVKMIDFGLATKLD-PN 1841
H D+ NIM + V ID G A L P
Sbjct: 194 HADLSEYNIMYIDK----VYFIDMGQAVTLRHPM 223
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Length = 126
Score = 41.0 bits (96), Expect = 5e-04
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 1474 VHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDR 1520
L AS+ V N Q SD G Y+ ++K G +H+ VL +
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
Score = 31.8 bits (72), Expect = 0.98
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQV 2265
++ + + D G Y C+ G + L+V V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
Score = 31.4 bits (71), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVLE 366
N + SD GTY +++ G + VL
Sbjct: 95 NLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 43.3 bits (102), Expect = 7e-04
Identities = 26/195 (13%), Positives = 47/195 (24%), Gaps = 28/195 (14%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEY-- 2164
G V C F +E + + +F ++ G Y
Sbjct: 37 RGGHVTLRCH----YRHRFNNFMLYKEDRIHIPIFHG-RIFQESFNMSPVTTAHAGNYTC 91
Query: 2165 -IIRAENHYGYRE--EVVFLNVQRKYDLPVIHYKNH-------------RRANKYDVIWL 2208
+ G+ V + V + P + ++ +L
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFL 151
Query: 2209 HNNKEIKPSNDFAYSSVAHVH--TLKIAEIFPEDSGVYTCEAFNDEGE---SFSSCTLLV 2263
H K + V I + +G Y C S S L +
Sbjct: 152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDI 211
Query: 2264 QVSWYKDGNPVSDDP 2278
V+ + +S P
Sbjct: 212 VVTGPYEKPSLSAQP 226
Score = 36.4 bits (84), Expect = 0.093
Identities = 27/188 (14%), Positives = 43/188 (22%), Gaps = 25/188 (13%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
G+ V C + + + F I + G Y
Sbjct: 132 SGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRC 191
Query: 2167 RAENHYGYRE-----EVVFLNVQRKYDLPVIHYKNHRRANK-------------YDVIWL 2208
+ + + + + V Y+ P + + + YD+ L
Sbjct: 192 YGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHL 251
Query: 2209 HNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE---SFSSCTLLVQV 2265
A V G Y C S S LLV V
Sbjct: 252 SREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSV 311
Query: 2266 SWYKDGNP 2273
+ GNP
Sbjct: 312 T----GNP 315
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 42.0 bits (98), Expect = 0.001
Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 299 GEPPPEVTWT-IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 357
P P++ W+ G+ + T +G + + +V + S +R++ E
Sbjct: 145 WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE 204
Query: 358 GSFTVTVLETISKT 371
+ ++++ + ++
Sbjct: 205 KTASISIADPFFRS 218
Score = 38.9 bits (90), Expect = 0.012
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 714 GEPPPEVTWT-IDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
P P++ W+ G+ + T +G + + +V + S +R++ E
Sbjct: 145 WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE 204
Query: 773 GSFTI-VPD 780
+ +I + D
Sbjct: 205 KTASISIAD 213
Score = 37.8 bits (87), Expect = 0.024
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 19/140 (13%)
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADE 1531
+ + +T A+L + N SD G+Y ++ ++ A + ++V +
Sbjct: 72 SILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH-VDVKG 130
Query: 1532 FAGDSLTLY-----WTPP-----RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTP---- 1577
+ + L W P +N G I V + V++ V
Sbjct: 131 YKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT-VEAPVVADGVGLYAVAASVIMRGSSG 189
Query: 1578 ---FVRVRNLAIGSTYEFRV 1594
+R+ +G +
Sbjct: 190 EGVSCTIRSSLLGLEKTASI 209
Score = 30.4 bits (68), Expect = 5.2
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 1413 QSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMA---FPQPAAFWFANDSIIDD 1469
Q G + V L + VK +D IH+ + +PQP W N
Sbjct: 103 QDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162
Query: 1470 SDTRVHKQ----LTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPE 1525
+ L +AS++++ S G +++ T + + D
Sbjct: 163 TVEAPVVADGVGLYAVAASVIMRGS---SGEGVSCTIRSSLLGLEKTASISIADPFFRSA 219
Query: 1526 NLHAD 1530
H
Sbjct: 220 QHHHH 224
Score = 29.7 bits (66), Expect = 9.8
Identities = 15/157 (9%), Positives = 29/157 (18%), Gaps = 39/157 (24%)
Query: 2184 QRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGV 2243
V++ + + + + + L+I + DSG
Sbjct: 42 VSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKA----ALRIHNVTASDSGK 97
Query: 2244 YTCEAFNDEGESFSSCTLLV---------------------------------QVSWYKD 2270
Y C F D + L Q+ W +
Sbjct: 98 YLCY-FQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNN 156
Query: 2271 GNPVSDDPATYQFTQIGQTYKMK-ILSTTLDDVGQYS 2306
Y + + S
Sbjct: 157 KGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVS 193
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 39.5 bits (92), Expect = 0.001
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 2107 EGQSVKFTCRVIAIATPTLTW---------FHNNQELKQSVKFMKRYAGDDYTFVINRTK 2157
EG + TCRV +L W F + + L+ + + R + + + ++
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQ 2184
+ D G+Y + +L V
Sbjct: 80 LSDEGQYTCSLFTM-PVKTSKAYLTVL 105
Score = 37.5 bits (87), Expect = 0.007
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 2202 KYDVIWLHNNKEIKPSNDFAYS-----SVAH----VHTLKIAEIFPEDSGVYTCEAFNDE 2252
+ W + ++ +D + ++ ++++ D G YTC F
Sbjct: 35 NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMP 94
Query: 2253 GESFSSCTLLVQV 2265
++ S L V
Sbjct: 95 VKT-SKAYLTVLG 106
Score = 35.6 bits (82), Expect = 0.028
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 1426 PVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHK-----QLTM 1480
+++TV G + + W D + +L
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65
Query: 1481 NSA---SLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRP 1521
S S+ V + SD GQY L T+ ++ VL P
Sbjct: 66 ASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 29.8 bits (67), Expect = 3.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 2024 EGQSVKFTCRVIAIATPTLTWFHNNQEL 2051
EG + TCRV +L W + Q+
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQT 47
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Length = 123
Score = 39.5 bits (91), Expect = 0.002
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 1326 PDPPEAPKVDRITK--DSVTLSWRPPKHDGGARIK---GYIVQKRKKGGDWVDANSVPV- 1379
P AP RI+K D + LSW PP G ++ ++ + + + +
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIY 64
Query: 1380 --PNPVHTVGNLSEGEEYT---------FRVIAVNEAG 1406
TV + FR+ A NE G
Sbjct: 65 CGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKG 102
Score = 36.4 bits (83), Expect = 0.021
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 174 PDRPGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPK---------------- 215
PG P+ K D + L W PP G I +Y +
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 216 YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG 256
Y + +C V A A + D FR+ A N+ G G
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
Score = 35.3 bits (80), Expect = 0.057
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 1042 PSPPQGPLDVS-DITPESCSLSWKPPLDDGG--SPITNYVVEKYESATGFWSKLSSFVR- 1097
S P P V + LSW+PP G + Y+ + S+L F+R
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQL-VFMRI 63
Query: 1098 ----SPAYDVFGLETNRQYR---------FRVRAENQYGV 1124
+ V + + FR+ A+N+ G
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGY 103
Score = 34.9 bits (79), Expect = 0.088
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 18/99 (18%)
Query: 1226 PDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGG---------EWLRANN 1276
P APS ++ + + L+W PP + G I Y R ++R
Sbjct: 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 1277 YPTT-------NLNFTVHDLREGGKYEFRVIAINEAGPG 1308
T L D FR+ A NE G G
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
Score = 34.1 bits (77), Expect = 0.14
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 1521 PHPPENLHADEFAGDSLTLYWTPPRDNGG--SEITNYVVEKKDYNSTVWTKVSSYV---- 1574
P P + D + L W PP G E + Y+ + +++
Sbjct: 8 PGAPSTVRI-SKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCG 66
Query: 1575 TTPFVRVRNLAIGSTYE---------FRVMAENQYG 1601
V + + + FR+ A+N+ G
Sbjct: 67 LKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKG 102
Score = 34.1 bits (77), Expect = 0.14
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 588 PDAPEKPTVKDWGEDFVDLAWKPPLNDGGSPITDYII---QKKEKGNPYWM--------- 635
P AP + D + L+W+PP + G I +Y + +
Sbjct: 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 636 ---NALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAG 669
+ V A + D T FR+ A NE G
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKG 102
Score = 31.4 bits (70), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 814 PDPPEAPKVDRITK--DSVTLSWRPPKHDGGARIK 846
P AP RI+K D + LSW PP G ++
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILE 39
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 41.3 bits (96), Expect = 0.002
Identities = 27/134 (20%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS-------VPDLKEGEEYE 244
LEW P + Y ++ K G W+ C T T V D+K+ Y
Sbjct: 23 LEWEPKPVN-----QVYTVQISTKSGDWKSKCF---YTTDTECDLTDEIVKDVKQ--TYL 72
Query: 245 FRVIAVNKGGPGEPSKASAPV-TCKPRFVAPK---IKTPLKDIIIKAGKILNVEIQFIGE 300
RV + G A P+ P F + P + G +NV ++
Sbjct: 73 ARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVE---- 128
Query: 301 PPPEVTWTIDGKEL 314
+ L
Sbjct: 129 -DERTLVRRNNTFL 141
Score = 36.3 bits (83), Expect = 0.081
Identities = 22/130 (16%), Positives = 34/130 (26%), Gaps = 17/130 (13%)
Query: 1328 PPEAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG 1387
T L W P + Y VQ K GDW T
Sbjct: 8 AAYNLTWK-STNFKTILEWEPKPVNQV-----YTVQISTKSGDWKSKCF----YTTDTEC 57
Query: 1388 NLSEG------EEYTFRVIAVNEAGNSEPGKQSGPVIVEEQPNKPVMDLS-GVRDITVKA 1440
+L++ + Y RV + G P+ P ++ + G I
Sbjct: 58 DLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFE 117
Query: 1441 GEDFSIHVPF 1450
++V
Sbjct: 118 QVGTKVNVTV 127
Score = 32.4 bits (73), Expect = 1.3
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 1061 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLET---NRQYRFRVR 1117
L W+P + Y V+ + +G W + D+ + Y RV
Sbjct: 23 LEWEPKPVN-----QVYTVQ-ISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVF 76
Query: 1118 AENQYGVSEPLELDNSITAKFPFTVPDP---PGQPQIVDWDTNNATL 1161
+ V + P P GQP I ++ +
Sbjct: 77 SYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKV 123
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 13/101 (12%)
Query: 2097 VIKPQSAFCYEGQSVKFTCRVIAIATPTL--TWFHNNQEL-----KQSVKFMKRYAG--- 2146
+ + +G S+ C + + W +Q L +
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 2147 --DDYTFVINRTKMEDRGEYI-IRAENHYGYREEVVFLNVQ 2184
+ + D GEY I G +FL V
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
Score = 32.6 bits (74), Expect = 0.41
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 1435 DITVKAGED--FSIHVPFMAFPQPAAFWFANDSII----DDSDTRVHKQLTM-----NSA 1483
+I+ + G H+ W D ++ D +
Sbjct: 12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGL 71
Query: 1484 SLVVKNSQRSDGGQYRLQL-KNPAGFDTATLHVRVLDRPHPPEN 1526
L +++ +D G+Y P G T + + VL+
Sbjct: 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune
system/cytokine complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A*
1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 40.5 bits (93), Expect = 0.004
Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 23/202 (11%)
Query: 1225 PPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRA---------- 1274
P + + W + + G A
Sbjct: 101 PKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG 160
Query: 1275 --NNYPTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAP 1332
Y + + + ++ K + T ++ KPDPP+
Sbjct: 161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDII-KPDPPKNL 219
Query: 1333 KVDRITK-DSVTLSWRPP----KHDGGARIKGYIVQKRKKGGDWVDANSVPVPNPVHTVG 1387
++ + V +SW P + + VQ + K T
Sbjct: 220 QLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT-FCVQVQGKSKREK----KDRVFTDKTSA 274
Query: 1388 NLSEGEEYTFRVIAVNEAGNSE 1409
+ + + V A + +S
Sbjct: 275 TVICRKNASISVRAQDRYYSSS 296
Score = 39.7 bits (91), Expect = 0.008
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 7/128 (5%)
Query: 141 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW-GKDHVDLEWTPPKK 199
V AV+K+ +PD P + V++ W P
Sbjct: 184 LPIEVMVDAVHKLKYEQYTSSFFI----RDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD- 238
Query: 200 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 259
+P S + + + K T + + + V A ++ S
Sbjct: 239 TWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWS 298
Query: 260 KASAPVTC 267
+ ++ V C
Sbjct: 299 EWAS-VPC 305
Score = 38.6 bits (88), Expect = 0.020
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 557 YLFRVKAVNSIGESDTLETTKTTVARNEFDEPDAPEKPTVKDW-GEDFVDLAWKPP---- 611
V AV+ + ++ + +PD P+ +K V+++W+ P
Sbjct: 186 IEVMVDAVHKLKYE----QYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWS 241
Query: 612 LNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPS 671
+T + +Q + K + TD + + V A + S
Sbjct: 242 TPHSYFSLT-FCVQVQGKSKREKKDR-----VFTDKTSATVICRKNASISVRAQDRYYSS 295
Query: 672 EPSD 675
S+
Sbjct: 296 SWSE 299
Score = 38.6 bits (88), Expect = 0.020
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Query: 1497 QYRLQLKNPAGFDTATLHVRVLD--RPHPPENLHADEFAG-DSLTLYWTPPR--DNGGSE 1551
+ + + ++ T + D +P PP+NL + + W P S
Sbjct: 187 EVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSY 246
Query: 1552 IT-NYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLS 1603
+ + V+ + + T + V A+++Y S
Sbjct: 247 FSLTFCVQVQGKSKREKKDRVFTDKT----SATVICRKNASISVRAQDRYYSS 295
Score = 36.2 bits (82), Expect = 0.12
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 1224 DPPDAPSQPEVTGYS-PSSVSLAWNPPAN----HGGRPITGYYVEKRERGGEWLRANNYP 1278
PD P ++ V ++W P H +T + V+ + + + +
Sbjct: 211 IKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT-FCVQVQGKSKREKKDRVFT 269
Query: 1279 TTNLNFTVHDLREGGKYEFRVIAINEAGPGKPS 1311
T + V A + S
Sbjct: 270 DK----TSATVICRKNASISVRAQDRYYSSSWS 298
Score = 35.9 bits (81), Expect = 0.15
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 1018 YSPSSVSLAWNPPANHGGRPITD----------KPSPPQGPLDVSDITPESCSLSWKPPL 1067
+ S+ + A H + KP PP+ +SW+ P
Sbjct: 179 AAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYP- 237
Query: 1068 DDGGSPITNYVVE---KYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGV 1124
D +P + + + + + + K F + + + VRA+++Y
Sbjct: 238 DTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSAT---VICRKNASISVRAQDRYYS 294
Query: 1125 SE 1126
S
Sbjct: 295 SS 296
Score = 33.5 bits (75), Expect = 0.66
Identities = 36/284 (12%), Positives = 68/284 (23%), Gaps = 30/284 (10%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDEG 358
+TWT+D + V G + D+G Y G +
Sbjct: 30 TPEEDGITWTLDQ--------SSEVLGSGKTLTIQVKE--FGDAGQYT----CHKGGEVL 75
Query: 359 SFTVTVLETISKTNTTTISSKNMMYLFERELLNLIVPDHLKNLWNMKKSLHPVLHCRGNH 418
S ++ +L +T K+ + L ++ +
Sbjct: 76 SHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFT-CWWLTTISTDLTFSV 134
Query: 419 LPIMEAVKSRYIIEMAEYGLDNWKTVPGFCPK------EFFTVKGLTEGKKYVFRIRTEN 472
+ + + A + E E + +
Sbjct: 135 KSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVH 194
Query: 473 MYGASEPLDPLFPD---KPSPPEGPLEVSNVTKESCKLSWRVPV---DDGGAPILHYIIE 526
+ F KP PP+ ++SW P L + ++
Sbjct: 195 KLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQ 254
Query: 527 KMDISRGTWSDAGMTVSLFYDVPRLIHRKEYLFRVKAVNSIGES 570
S+ D T +I RK V+A + S
Sbjct: 255 VQGKSKREKKDRVFTDKTSAT---VICRKNASISVRAQDRYYSS 295
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 11/78 (14%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVI 2153
+V++ G+ V TC +TW + G T I
Sbjct: 7 DVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSS---------EVLGSGKTLTI 55
Query: 2154 NRTKMEDRGEYIIRAENH 2171
+ D G+Y
Sbjct: 56 QVKEFGDAGQYTCHKGGE 73
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 40.3 bits (94), Expect = 0.005
Identities = 26/181 (14%), Positives = 43/181 (23%), Gaps = 21/181 (11%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEY-- 2164
++V C L + + F I + G Y
Sbjct: 20 SEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79
Query: 2165 -IIRAENHYGYRE--EVVFLNVQRKYDLPVIHYKNH-------------RRANKYDVIWL 2208
+ Y + + + + Y+ P + + + YD+ L
Sbjct: 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHL 139
Query: 2209 HNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEG---ESFSSCTLLVQV 2265
E A V G Y C + S SS LLV V
Sbjct: 140 SREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSV 199
Query: 2266 S 2266
+
Sbjct: 200 T 200
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 39.3 bits (91), Expect = 0.008
Identities = 30/210 (14%), Positives = 55/210 (26%), Gaps = 41/210 (19%)
Query: 2097 VIKPQSAFCYEGQSVKFTCRVIAIATPT-----LTWFHNNQE-------LKQSVKFMKRY 2144
V P + G SV C + LTW + + Q + +
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 2145 AGD-----------DYTFVINRTKMEDRGEYIIRAENH-YGYREEVVFLNVQRKYDLPVI 2192
+ D + + ++ED G Y G R ++L V K
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE 122
Query: 2193 HYKNHRRANKY--------------DVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFP 2238
K + W + + ++ V + + P
Sbjct: 123 VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVP 182
Query: 2239 ---EDSGVYTCEAFNDEGESFSSCTLLVQV 2265
D TC+ ++ E T+ + V
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
Score = 37.4 bits (86), Expect = 0.030
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 20/124 (16%)
Query: 1469 DSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK-NPAGFDTATLHVRVLDRPHPPENL 1527
+ ASL + + D G Y P G + + +RVL +P +
Sbjct: 64 LEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV 123
Query: 1528 HADEFAGDSL--------------TLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 1573
+ G+ + + W + + + TV T S +
Sbjct: 124 QKVQLTGEPVPMARCVSTGGRPPAQITWH----SDLGGMPQTSQVPGFLSGTV-TVTSLW 178
Query: 1574 VTTP 1577
+ P
Sbjct: 179 ILVP 182
Score = 32.7 bits (74), Expect = 1.1
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 28/188 (14%)
Query: 192 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA-----------NITATSVPDLKEG 240
L W + ++ + + P Y ++ V A + V D EG
Sbjct: 36 LTWA--RHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVED--EG 91
Query: 241 EEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVE-IQFIG 299
Y + P + P+ ++ + + + + G
Sbjct: 92 S-YTCLFVT----FPQGSRSVDIWLRV---LAKPQNTAEVQKVQLTGEPVPMARCVSTGG 143
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNT--VNTKRSDSG-TYHLELRNTSGRD 356
PP ++TW D + + + G T+ + + G ++ + S
Sbjct: 144 RPPAQITWHSDLGGM-PQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEK 202
Query: 357 EGSFTVTV 364
TV++
Sbjct: 203 PQLLTVSL 210
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm,
beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A
{Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 40.4 bits (94), Expect = 0.009
Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 18/153 (11%)
Query: 992 IVDGKPVIAKSPFDPPDAPSQPEVT--GYSPSSVSLAWNPPANHGGRPITDKPSPPQGPL 1049
++ G P+ + DAP Q +V Y SS+ L W P + I D
Sbjct: 20 LMVGTPMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAPEDTRK--IVD--------- 68
Query: 1050 DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETN 1109
I L +D SP Y+ Y + + + V GL+
Sbjct: 69 --YQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVM---QNFTVIGLKPE 123
Query: 1110 RQYRFRVRAENQYGVSEPLELDNSITAKFPFTV 1142
Y+F V+A+ G + +
Sbjct: 124 TSYQFTVKAQYADGSLSVASKPITAKTSAKPQI 156
Score = 35.0 bits (80), Expect = 0.31
Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 26/107 (24%)
Query: 1225 PPDAPSQPEVT--GYSPSSVSLAWNPPANHGGRPITGY--YVEKRERGGEWLRANNYPT- 1279
DAP Q +V Y SS+ L W P + I Y + + G +N+
Sbjct: 34 SLDAPQQLQVPTLAYDESSIVLVWKAPEDTRK--IVDYQIFSAGKLLGKASDNNDNFSPA 91
Query: 1280 -------------------TNLNFTVHDLREGGKYEFRVIAINEAGP 1307
NFTV L+ Y+F V A G
Sbjct: 92 KPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGS 138
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A
{Homo sapiens}
Length = 145
Score = 37.8 bits (87), Expect = 0.010
Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 14/133 (10%)
Query: 1403 NEAGNSEP-GKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWF 1461
+ +S G + + D TV AG + + W
Sbjct: 14 RQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWS 73
Query: 1462 ANDSII-------DDSDTRVHKQLTMNSA---SLVVKNSQRSDGGQYRLQLKNPAGFDTA 1511
D R+ QL ++ S+ + N +D G+Y + TA
Sbjct: 74 NPAQQTLYFGEKRALRDNRI--QLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTA 130
Query: 1512 TLHVRVLDRPHPP 1524
V VL P P
Sbjct: 131 KSLVTVLGIPQKP 143
Score = 36.3 bits (83), Expect = 0.032
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 2203 YDVIWLHNNKEIKPSNDFAYS-----SVAHV----HTLKIAEIFPEDSGVYTCEAFNDEG 2253
+ W + ++ + + ++ I+ + D G YTC F
Sbjct: 68 SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPV 127
Query: 2254 ESFSSCTLLVQV 2265
+ + + V
Sbjct: 128 RT-AKSLVTVLG 138
Score = 29.8 bits (66), Expect = 5.7
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 10/106 (9%)
Query: 2096 FVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQEL----KQSVKFMKRY-----AG 2146
G +V C+V +L W + Q+ ++ R
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 2147 DDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI 2192
+ + I+ + D GEY R + V P+I
Sbjct: 101 HELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKPII 145
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 38.8 bits (89), Expect = 0.010
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 7/144 (4%)
Query: 1272 LRANNYPTTNL--NFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPP 1329
++AN Y N+ V L+ +I K + + P
Sbjct: 48 IQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVP 107
Query: 1330 EAPKVDRITKDSVTLSWRPPKHDGGARIKGYIVQKRKKGGDW-VDANSVPVPNPVHTVGN 1388
+V T S+ +SW + Y + + GG+ V +VP + T+
Sbjct: 108 TNLEVVAATPTSLLISWDASY----YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISG 163
Query: 1389 LSEGEEYTFRVIAVNEAGNSEPGK 1412
L G +YT V A ++ S
Sbjct: 164 LKPGVDYTITVYAYSDYYGSHHYS 187
Score = 32.6 bits (73), Expect = 1.1
Identities = 14/69 (20%), Positives = 23/69 (33%)
Query: 611 PLNDGGSPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGP 670
+ ++ Y I E G + VP + + I L G +Y V A ++
Sbjct: 123 SWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYG 182
Query: 671 SEPSDASDI 679
S I
Sbjct: 183 SHHYSPISI 191
Score = 32.2 bits (72), Expect = 1.3
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 1203 QTPHGWWLQDSRIQGRIQSPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITGYYV 1262
+ +G + + P+ EV +P+S+ ++W+ ++ Y +
Sbjct: 81 EVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASY----YGVSYYRI 136
Query: 1263 EKRERGGEWLRANNY-PTTNLNFTVHDLREGGKYEFRVIAINEAGPGKPSKPTDI 1316
E GG P ++ T+ L+ G Y V A ++ P I
Sbjct: 137 TYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISI 191
Score = 32.2 bits (72), Expect = 1.3
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 9/139 (6%)
Query: 130 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDH 189
+ +A +L++ + V ++G + + G
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 190 -VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRV 247
+ + W +S Y I G VP + + ++ LK G +Y
Sbjct: 119 SLLISWDASY----YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDY---T 171
Query: 248 IAVNKGGPGEPSKASAPVT 266
I V S +P++
Sbjct: 172 ITVYAYSDYYGSHHYSPIS 190
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune
system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1
b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 38.4 bits (89), Expect = 0.012
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 51/188 (27%)
Query: 2107 EGQSVKFTCRVIA----IATPTLTWFHNNQEL----KQSVKFMKRYAG-------DDYTF 2151
+ +C +A + W + + + Y ++ +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67
Query: 2152 VINRTKMEDRGEYI-----IRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRRANKY--- 2203
VI + D G Y + V L+V+ + P I +N
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII 127
Query: 2204 ----------DVIWLHNNKEIKPSND----------FAYSSVAHVHTLKIAEIFPEDSGV 2243
+ WL N +E+ N +A SS + +
Sbjct: 128 CSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN--------MTTNHS 179
Query: 2244 YTCEAFND 2251
+ C
Sbjct: 180 FMCLIKYG 187
Score = 36.9 bits (85), Expect = 0.039
Identities = 9/69 (13%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTV-TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 357
G P P ++W +G+EL + + + + + ++ + + ++ ++ R
Sbjct: 133 GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN 192
Query: 358 GSFTVTVLE 366
+F +
Sbjct: 193 QTFNWNTAK 201
Score = 36.1 bits (83), Expect = 0.079
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 39/116 (33%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFS-----SCTLLV--------------------- 2263
++ I + P D G Y C E ++F TL V
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 2264 ------------QVSWYKDGNPVSDDPATYQFTQIGQTYKMK-ILSTTLDDVGQYS 2306
+SW ++G ++ T + Y + L + +
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFM 181
Score = 35.4 bits (81), Expect = 0.11
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTV-TSIGYHTIVNTVNTKRSDSGTYHLELRNTSGRDE 772
G P P ++W +G+EL + + + + + ++ + + ++ ++ R
Sbjct: 133 GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN 192
Query: 773 GSFTI 777
+F
Sbjct: 193 QTFNW 197
Score = 31.9 bits (72), Expect = 1.6
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 1481 NSASLVVKNSQRSDGGQYR--LQLKNPAGF---DTATLHVRVLDRPHPPENLHADEFAGD 1535
N+ S+V+ + SD G Y + F A + + V P + +
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 1536 SLTLY-----WTPP-----RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRN 1583
+ P +NG +D + ++ VSS + +
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA-VSSKLDFNMTTNHS 179
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A
1py9_A
Length = 139
Score = 37.2 bits (86), Expect = 0.017
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
+ + + +L ++N + SD G Y ++ + + A + ++V D
Sbjct: 74 ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 31.1 bits (70), Expect = 1.8
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 292 NVEIQ-FIGEPPPEVTWTIDGKELKTD---SVRTTVTSIGYHTIVNTV-----NTKRSDS 342
+E+ + V +GK+ + R + V N + SD
Sbjct: 38 GMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDE 97
Query: 343 GTYHLELRNTSGRDEGSFTVTVLETISKTNTTTISS 378
G Y R+ S ++E + + V + N S
Sbjct: 98 GGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRSRS 133
Score = 29.5 bits (66), Expect = 7.3
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 24/111 (21%)
Query: 2097 VIKPQSA-FCYEGQSVKFTCRV---IAIATPTLTWFHN-------------NQELKQSVK 2139
VI P G + CR+ + W+ + +Q+ +Q+ +
Sbjct: 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 2140 FMKRYAGD-------DYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNV 2183
+ R I + D G Y +H E V L V
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
Score = 29.1 bits (65), Expect = 9.3
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 2186 KYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYT 2245
+ V Y+N + + + + V L+I + D G YT
Sbjct: 47 PFSRVVHLYRNGKD-QDAEQAPEYRGRTELLKESIGEGKV----ALRIQNVRFSDEGGYT 101
Query: 2246 CEAFNDEGESFSSCTLLVQ--VSWYKDGNPVS 2275
C + + ++ L V+ W G S
Sbjct: 102 CFFRDHSYQEEAAVELKVEDPFYWINPGRSRS 133
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell
adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 37.5 bits (86), Expect = 0.028
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 1468 DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLK-NPAGFDTATLHVRVLDRPHPPE 1525
D+ R + LV+ +Q D Y ++ AG AT + V +P E
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120
Score = 35.6 bits (81), Expect = 0.13
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 299 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH----LELRNTSG 354
G P P++TW +G+ L+ T T R SG L LR
Sbjct: 146 GNPAPKITWYRNGQRLEVPVEMNP-------EGYMTSRTVREASGLLSLTSTLYLRLRKD 198
Query: 355 RDEGSFT 361
+ SF
Sbjct: 199 DRDASFH 205
Score = 35.6 bits (81), Expect = 0.13
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 714 GEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH----LELRNTSG 769
G P P++TW +G+ L+ T T R SG L LR
Sbjct: 146 GNPAPKITWYRNGQRLEVPVEMNP-------EGYMTSRTVREASGLLSLTSTLYLRLRKD 198
Query: 770 RDEGSFT 776
+ SF
Sbjct: 199 DRDASFH 205
Score = 34.0 bits (77), Expect = 0.39
Identities = 23/205 (11%), Positives = 45/205 (21%), Gaps = 53/205 (25%)
Query: 2097 VIKPQSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQELKQSV----------------- 2138
+ P G+SV C L WF ++ +
Sbjct: 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63
Query: 2139 ---KFMKRYAGDDYTFVINRTKMEDRGEYIIRAENH-YGYREEVVFLNVQRKYDLPVIHY 2194
+ V+ ++ D +Y+ G E LNV K + +
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123
Query: 2195 KNHRRANKY------------------DVIWLHNNKEIKPSNDFAYSSVAHVH------- 2229
+ + W N + ++ +
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183
Query: 2230 ------TLKIAEIFPEDSGVYTCEA 2248
TL + + + C A
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAA 208
Score = 32.9 bits (74), Expect = 1.1
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 2191 VIHYKNHRRANKYDVIWLHNNK---EIKPSNDFAYSSVAHVH---TLKIAEIFPEDSGVY 2244
+ + R + + ++ + S + L +AE D Y
Sbjct: 33 LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDY 92
Query: 2245 TCEAFNDEGESFSSCTLL 2262
C + + L
Sbjct: 93 VCVVRAGAAGTAEATARL 110
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A
2dl2_A 3h8n_A
Length = 201
Score = 37.2 bits (86), Expect = 0.032
Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 29/185 (15%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQE----LKQSVKFMKRYAGDDYTFVINRTKMEDRG 2162
++V C + F ++E + F I+R + G
Sbjct: 21 SEETVILQCW----SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAG 76
Query: 2163 EYI---IRAENHYGYRE--EVVFLNVQRKYDLPVIHYKNHRRANK-------------YD 2204
Y + Y + + + + Y+ P + + YD
Sbjct: 77 TYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYD 136
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGE---SFSSCTL 2261
+ L E A V G Y C + S SS L
Sbjct: 137 MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPL 196
Query: 2262 LVQVS 2266
LV V+
Sbjct: 197 LVSVT 201
Score = 29.9 bits (67), Expect = 8.5
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 2203 YDVIWLHNNKEIKPSNDFAYSSVAHVHT--LKIAEIFPEDSGVYTCEAFNDEGE---SFS 2257
++ LH + V I+ + + +G Y C S
Sbjct: 35 FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAP 94
Query: 2258 SCTLLVQVSWYKDGNPVSDDP 2278
S L + + + +S P
Sbjct: 95 SDPLDIVIIGLYEKPSLSAQP 115
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 37.9 bits (88), Expect = 0.039
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 17/130 (13%)
Query: 1234 VTGYSPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGG 1293
V + + VS++WN G K G T + + +GG
Sbjct: 31 VKVKNAADVSVSWNLWNGDTGTTAKVLLNGKEAWSGP-------STGSSGTANFKVNKGG 83
Query: 1294 KYEFRVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRITKDSVTLSWRPPKHDG 1353
+Y+ +V N G S T+IV P + P + +P K +
Sbjct: 84 RYQMQVALCNADG-CTASDATEIVVADTDGSHLAPLKEP---------LLEKNKPYKQNS 133
Query: 1354 GARIKGYIVQ 1363
G + Y V+
Sbjct: 134 GKVVGSYFVE 143
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 36.4 bits (84), Expect = 0.065
Identities = 28/184 (15%), Positives = 48/184 (26%), Gaps = 28/184 (15%)
Query: 2107 EGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTKMEDRGEYII 2166
+G V C+ + ++ + + + F I E G Y
Sbjct: 18 QGSPVTLRCQGGQETQ--EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRC 75
Query: 2167 RAEN-HYGYRE--EVVFLNVQRKYDLPVIHYKNH-------------RRANKYDVIWLHN 2210
+ G E + + L V Y P + + +D L
Sbjct: 76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCK 135
Query: 2211 NKEIKPSNDFAYSSVAHVHTLKIAE--IFP---EDSGVYTCEAFNDEG---ESFSSCTLL 2262
E + +S H A + P Y C A++ S S L
Sbjct: 136 EGEDEHP--QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLE 193
Query: 2263 VQVS 2266
+ V
Sbjct: 194 LLVL 197
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.066
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 1459 FWFANDSIIDDSDTRVH--KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVR 1516
W + +R + ++ SL ++NS SD G Y +++ P F+ +
Sbjct: 47 IWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFS 106
Query: 1517 VLDRPHP 1523
+ +P
Sbjct: 107 LQVKPEL 113
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune
system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A*
1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 35.3 bits (81), Expect = 0.067
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1472 TRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPA---GFDTATLHVRVLDRPHPP 1524
+ + +L +++++ SD G+Y +++ + L V V H P
Sbjct: 77 FHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRP 132
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 36.0 bits (82), Expect = 0.086
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 8/107 (7%)
Query: 2089 RRQAAPRFVIKPQSAFCY--EGQSVKFTCRVI-AIATPTLTWFHNNQELKQSVKFMKRYA 2145
+ ++P G S + TCR+ A ++ W + L +
Sbjct: 1 QSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSD 55
Query: 2146 GDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI 2192
+ + G + + V L V + +
Sbjct: 56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTV 102
Score = 30.3 bits (67), Expect = 5.7
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 275 KIKTPLKDIIIKAGKILNVEIQFIG-EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVN 333
+++ P + + G + + + V W D+ V S +++
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQW------RGLDTSLGAVQSDTGRSVLT 62
Query: 334 TVNTKRSDSGTYHLELRNTSGRDEGSFTVTV 364
N S +GT + + + V
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 35.7 bits (82), Expect = 0.090
Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 24/184 (13%)
Query: 1238 SPSSVSLAWNPPANHGGRPITGYYVEKRERGGEWLRANNYPTTNLNFTVHDLREGGKYEF 1297
+ ++++ + ++ G + ++ T G Y
Sbjct: 15 AGKDINISATVKSKTP---VSKVEFY---NGDTLISSDTTAPYTAKITGA---AVGAYNL 65
Query: 1298 RVIAINEAGPGKPSKPTDIVQCKEQKRKPDPPEAPKVDRI--TKDSVTLSWRPPKHDGGA 1355
+ +A+ G S T V K + APK + + + + ++ DG
Sbjct: 66 KAVAVLSDGRRIESPVT-PVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITATASDSDGK- 123
Query: 1356 RIKGYIVQKRKKGGDWVDANSVPVPNPVHTVGNLSEGEEYTFRVIAVNEAGNSEPGKQSG 1415
I G+ + ++ P EG + VIA ++ +
Sbjct: 124 -ISRVDF---LVDGEVIGSDRE---APYEYEWKAVEGN-HEISVIAYDDDDAA---STPD 172
Query: 1416 PVIV 1419
V +
Sbjct: 173 SVKI 176
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker
blast-1, BCM1 surface antigen, leukocyte antigen MEM-102,
TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.1 bits (78), Expect = 0.14
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 1433 VRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDS-----IIDDSDTRVHK------QLTM 1480
+ +TV +G + ++++ WF +L
Sbjct: 11 LVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDP 70
Query: 1481 NSASLVVKNSQRSDGGQYRLQLKNPAGF-DTATLHVRVLDRPHPP 1524
S +L + Q+ D Y +++ G + ++VLD P
Sbjct: 71 QSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 34.1 bits (78), Expect = 0.14
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 291 LNVEIQFIGEPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRS--DSGTYHLE 348
LN+ + E ++TW T + + R D + L
Sbjct: 24 LNISES-LPENYKQLTW------FYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALY 76
Query: 349 LRNTSGRDEGSFTVTVLETISKTNTTTIS 377
+ D ++ + VL+ I
Sbjct: 77 ISKVQKEDNSTYIMRVLKKTGNEQEWKIK 105
Score = 33.4 bits (76), Expect = 0.22
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 2107 EGQSVKFTCRVIAIATPT-LTWFHNNQEL------KQSVKFMKRYAG------DDYTFVI 2153
G +V LTWF+ + ++S F ++ G I
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 2154 NRTKMEDRGEYIIRAENHYGYREEVVF-LNVQRKYDLPVI 2192
++ + ED YI+R G +E L V PVI
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 117
Score = 32.2 bits (73), Expect = 0.52
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 12/68 (17%)
Query: 2200 ANKYDVIWLHNNKE--------IKPSNDFAYSSVAHV----HTLKIAEIFPEDSGVYTCE 2247
N + W + + + + + L I+++ ED+ Y
Sbjct: 32 ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91
Query: 2248 AFNDEGES 2255
G
Sbjct: 92 VLKKTGNE 99
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 35.8 bits (81), Expect = 0.18
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 2184 QRKYDLPVIHYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGV 2243
+ + W H + S L I + + G
Sbjct: 510 VSLAPNSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPN---CILFIENLTAQQYGH 566
Query: 2244 YTCEA 2248
Y CEA
Sbjct: 567 YFCEA 571
Score = 31.1 bits (69), Expect = 5.1
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 1454 PQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATL 1513
W +++ + + L ++N G Y + + +
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSP----NCILFIENLTAQQYGHYFCEAQE-GSYFREAQ 581
Query: 1514 HVRVLDR 1520
H ++L
Sbjct: 582 HWQLLPE 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.26
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 2135 KQSVK----FMKRYAGDDY-TFVINRTKME 2159
KQ++K +K YA D I T ME
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT-ME 47
Score = 30.7 bits (68), Expect = 3.2
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 31/54 (57%)
Query: 2052 KQSVK----FMKRYAGDDYTFYSSLRKLQIDRFSIQDTSFDRRQAAPRFVIKPQ 2101
KQ++K +K YA D +AP IK
Sbjct: 19 KQALKKLQASLKLYADD---------------------------SAPALAIKAT 45
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 34.4 bits (79), Expect = 0.29
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 2025 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKR-YAGDDYTFYSSLRKLQIDRFSIQ 2083
G SVK CR + T+ W+ Q KQS+ M G T+ + K D+F I
Sbjct: 16 GTSVKIECRSLDFQATTMFWYR--QFPKQSLMLMATSNEGSKATYEQGVEK---DKFLIN 70
Query: 2084 DTS 2086
S
Sbjct: 71 HAS 73
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor, immune
system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F*
2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D*
3qiu_D
Length = 245
Score = 34.6 bits (79), Expect = 0.30
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
P GQ V C ++ W+ Q L Q ++F+ + S L K
Sbjct: 9 PSHQIIDMGQMVTLNCDPVS-NHLYFYWYK--QILGQQMEFLVNFYNGKVMEKSKLFK-- 63
Query: 2077 IDRFSIQDTS 2086
D+FS++
Sbjct: 64 -DQFSVERPD 72
Score = 31.9 bits (72), Expect = 2.2
Identities = 34/220 (15%), Positives = 59/220 (26%), Gaps = 64/220 (29%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM------------------ 2141
P GQ V C ++ W+ Q L Q ++F+
Sbjct: 9 PSHQIIDMGQMVTLNCDPVS-NHLYFYWYK--QILGQQMEFLVNFYNGKVMEKSKLFKDQ 65
Query: 2142 ---KRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHR 2198
+R G +T I T +ED Y + Y E+ + L V+
Sbjct: 66 FSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTR----LTVLEDL-KN 120
Query: 2199 RANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSS 2258
++ + EI + +A +P+
Sbjct: 121 VFPPEVAVFEPSEAEISHTQKATLVCLAT-------GFYPDH------------------ 155
Query: 2259 CTLLVQVSWYKDGNPVSDDPATY------QFTQIGQTYKM 2292
V++SW+ +G V T Q Y +
Sbjct: 156 ----VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL 191
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1
g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 35.1 bits (79), Expect = 0.34
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
V W N +K + + L I + DSGVY C +
Sbjct: 564 VFWKFQNGVLKAESP--KYGLMGRKNLLIFNLSEGDSGVYQCLS 605
Score = 31.3 bits (69), Expect = 5.4
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 301 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH 346
V W LK +S + + I N DSG Y
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLI---FNLSEGDSGVYQ 602
Score = 31.3 bits (69), Expect = 5.4
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 716 PPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTYH 761
V W LK +S + + I N DSG Y
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLI---FNLSEGDSGVYQ 602
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.0 bits (75), Expect = 0.35
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 1473 RVH--KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD--TATLHVRVLDRP 1521
R+ + S+V+ N SD G + +KNP T+ + + V ++
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 32.7 bits (75), Expect = 0.39
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
PR+ + P GQ+V C + P ++W+ Q+L++ ++++
Sbjct: 8 PRWRLVP------RGQAVNLRCILKNSQYPWMSWYQ--QDLQKQLQWLFTLRSPGDKEVK 59
Query: 2071 SLRKLQIDRFSIQDTS 2086
SL + +
Sbjct: 60 SLPG---ADYLATRVT 72
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 33.8 bits (77), Expect = 0.43
Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAI-ATPTLTWF--------------HNNQELKQSVKFMKRY 2144
P S E + V C I T + W+ + +
Sbjct: 6 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE 65
Query: 2145 AGDDYTFVINRTKMEDRGEYI-IRAENHYGYREEVVF-----LNVQRKYDLP 2190
T +++R + D Y I ++ F L V P
Sbjct: 66 DRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNP 117
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 31.6 bits (71), Expect = 0.46
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 617 SPITDYIIQKKEKGNPYWMNALEVPANKTDVKIPDLTKGQEYEFRVIAVNEAGPSE 672
S I+ YI++ + K + +P + I L G YE ++I++ + G E
Sbjct: 10 SHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQE 65
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM
receptor, molecular mimicry, multiple sclerosis, immune
SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Length = 279
Score = 34.1 bits (78), Expect = 0.48
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 2025 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM-KRYAGDDYTFYSSLRKLQIDRFSIQ 2083
G SVK CR + T+ W+ Q KQS+ M G T+ + K D+F I
Sbjct: 39 GTSVKIECRSLDFQATTMFWYR--QFPKQSLMLMATSNEGSKATYEQGVEK---DKFLIN 93
Query: 2084 DTS 2086
S
Sbjct: 94 HAS 96
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 32.3 bits (73), Expect = 0.52
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP 1523
++ ++ + SL ++N+ DGG Y ++ P F + V P
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II,
glycoprotein, immune response, membrane, transmembrane,
GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens}
PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A
1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A*
3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...
Length = 181
Score = 33.1 bits (76), Expect = 0.64
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2041 TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+TW N + + V +D+ F
Sbjct: 118 NVTWLRNGKPVTTGVSETVFLPREDHLFR 146
Score = 32.8 bits (75), Expect = 0.84
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+TW N + + V +D+ F
Sbjct: 118 NVTWLRNGKPVTTGVSETVFLPREDHLF 145
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.7 bits (72), Expect = 0.65
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 336 NTKRSDSGTYHLELRNTSGRDEGSFTVTVLETI 368
N ++ D GTY++ + +E T+ V + +
Sbjct: 79 NVRKEDKGTYYMRV-LRETENELKITLEVFDPV 110
Score = 30.2 bits (68), Expect = 2.1
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
L I+ + ED G Y +
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELK 101
Score = 29.4 bits (66), Expect = 4.9
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 1433 VRDITVKAGEDFSIHVPFMAFPQPAAF-WFANDS------IIDDSDTRVHKQ----LTMN 1481
+ DI G + ++ + W + + + T + + +
Sbjct: 10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 1482 --SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLD 1519
+ +L + N ++ D G Y +++ + + + V D
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETE-NELKITLEVFD 108
Score = 29.4 bits (66), Expect = 5.0
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 2101 QSAFCYEGQSVKFTCRVIAIATPT-LTWFHNNQEL-------KQSVKFMKRYAG----DD 2148
Y G +V + +TW H + F + G ++
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE 70
Query: 2149 YTFV--INRTKMEDRGEYIIR 2167
I+ + ED+G Y +R
Sbjct: 71 NNGALHISNVRKEDKGTYYMR 91
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 33.4 bits (76), Expect = 0.79
Identities = 41/291 (14%), Positives = 69/291 (23%), Gaps = 73/291 (25%)
Query: 2025 GQSVKFTCRV-----------IAIATPTLTWFHNNQELKQSVKFMKRYAGDDY--TFYSS 2071
G+S C V A P +N +E + F S
Sbjct: 18 GESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSIS 77
Query: 2072 LRKLQID--------RF----------SIQDTSFDRRQAAPRFVIKPQSAFCYEGQSVKF 2113
+ + +F S T R V+ +A +V F
Sbjct: 78 ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSF 137
Query: 2114 TCRVIAI--ATPTLTWFHNNQELKQSV-KFMKRYAGDDYTFV----INRTKMEDRGEYII 2166
TC TL WF N EL Y+ + T+ + + I
Sbjct: 138 TCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVIC 197
Query: 2167 RAENHYGYREEVVFLNVQRKYDLPVIHY--------KNHRRAN-----------KYDVIW 2207
H + + + + V + + N + + W
Sbjct: 198 EV-AHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTW 256
Query: 2208 LHNNKEIK----------PSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEA 2248
L N + + + S L + D TC+
Sbjct: 257 LENGNVSRTETASTVTENKDGTYNWMS-----WLLVNVSAHRDDVKLTCQV 302
Score = 31.1 bits (70), Expect = 4.1
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 45/122 (36%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESF-----------------------SSCTLL---- 2262
++ I+ I P D+G Y C F +
Sbjct: 75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 2263 --------------VQVSWYKDGNPVSDDPATYQFTQIGQTYKM----KILSTTLDDVGQ 2304
+ + W+K+GN +SD +Y + K++ T D Q
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 2305 YS 2306
Sbjct: 195 VI 196
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 32.8 bits (75), Expect = 0.83
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 2025 GQSVKFTCRVIAI--ATPTLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
GQ C + +TW N + + + V DY+F+
Sbjct: 100 GQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 146
Score = 32.4 bits (74), Expect = 1.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 2108 GQSVKFTCRVIAI--ATPTLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
GQ C + +TW N + + + V DY+F
Sbjct: 100 GQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSF 145
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 31.6 bits (71), Expect = 1.0
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Query: 1223 FDPPDAPSQPEVTGY-SPSSVSLAWNPPANHGGRPITGYYVE------KRERGGEWLRAN 1275
F+PP VT + + + W P + + + + G E L N
Sbjct: 18 FNPPSN-----VTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLIN 72
Query: 1276 NYPTTNLNFTVHDLREGGKYEFRV 1299
+ K+ ++
Sbjct: 73 VSGDLENRYNFPSSEPRAKHSVKI 96
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 33.1 bits (75), Expect = 1.0
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
PR+++K +GQ K C P + W+ Q KF+ + +
Sbjct: 34 PRYLVKG------QGQKAKMRCIPE-KGHPVVFWYQ--QNKNNEFKFLINFQNQEVLQQI 84
Query: 2071 SLRKLQIDRFSIQDTS 2086
+ + RFS + S
Sbjct: 85 DMTE---KRFSAECPS 97
Score = 32.7 bits (74), Expect = 1.2
Identities = 33/226 (14%), Positives = 56/226 (24%), Gaps = 70/226 (30%)
Query: 2094 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM------------ 2141
PR+++K +GQ K C P + W+ Q KF+
Sbjct: 34 PRYLVKG------QGQKAKMRCIPE-KGHPVVFWYQ--QNKNNEFKFLINFQNQEVLQQI 84
Query: 2142 ---------KRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVI 2192
+ + + I ++ D Y+ A + ++ F R
Sbjct: 85 DMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLC-ASSLNWSQDTQYFGPGTRLL----- 138
Query: 2193 HYKNHRRANKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDE 2252
+ P V AEI C A
Sbjct: 139 -------------VLEDLKNVFPPE--------VAVFEPSEAEISHTQKATLVCLATGFY 177
Query: 2253 GESFSSCTLLVQVSWYKDGNPVSDDPATY------QFTQIGQTYKM 2292
+ V++SW+ +G V T Q Y +
Sbjct: 178 PDH-------VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL 216
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell
adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 32.4 bits (73), Expect = 1.0
Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 27/173 (15%)
Query: 2098 IKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFVINRTK 2157
++P+ S++ C P + + L + + +
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETS--LNKIL-----LDEQAQWKHYLVSN 58
Query: 2158 MEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHYKNHRR-----------------A 2200
+ ++V + ++ +
Sbjct: 59 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 118
Query: 2201 NKYDVIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEI-FPEDSG-VYTCEAFND 2251
+ + N+ + + T ED ++C A D
Sbjct: 119 DSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171
Score = 32.0 bits (72), Expect = 1.6
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIA---IATPTLTWFHNNQELKQ 2053
+ ++ Q G+S CRV + + TL F N+ L
Sbjct: 89 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY 134
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 31.3 bits (70), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 336 NTKRSDSGTYHLELRNTSGR-DEGSFTVTVLE 366
+ K DSG Y LE+ NT G+ +F + +L+
Sbjct: 81 SAKLQDSGHYLLEITNTGGKVCNKNFQLLILD 112
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG;
2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A*
2atp_A* 2arj_R
Length = 128
Score = 31.4 bits (71), Expect = 1.1
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCT 2260
L + + E+ G Y C ++ FSS
Sbjct: 86 VLTLNKFSKENEGYYFCSVISNSVMYFSSVV 116
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}
Length = 207
Score = 32.4 bits (74), Expect = 1.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 2041 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2068
+TW N + + V +D+ F
Sbjct: 133 NVTWLRNGKPVTTGVSETVFLPREDHLF 160
Score = 32.4 bits (74), Expect = 1.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+TW N + + V +D+ F
Sbjct: 133 NVTWLRNGKPVTTGVSETVFLPREDHLF 160
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 31.5 bits (71), Expect = 1.3
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 2204 DVIWLHNNKEIK--PSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTL 2261
V ++ N KEI P + + + ++ ED G YT + + + S+ L
Sbjct: 69 KVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVL 128
Query: 2262 L 2262
+
Sbjct: 129 I 129
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 32.4 bits (73), Expect = 1.4
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 15/94 (15%)
Query: 1061 LSWKPPLDDGGSPITNYVVE--KYESATGFWSKLSSFVRSPAYDVFGLETN--RQYRFRV 1116
+ W+ + + VE Y W + ++ + RV
Sbjct: 29 VYWEYQ---IMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRV 85
Query: 1117 RAENQYGVSEPLELDNSITAKF-PF--TVPDPPG 1147
+A E + + +F PP
Sbjct: 86 KAR-----VGQKESAYAKSEEFAVCRDGKIGPPK 114
Score = 31.3 bits (70), Expect = 2.9
Identities = 32/223 (14%), Positives = 50/223 (22%), Gaps = 47/223 (21%)
Query: 74 PSPPEGPL--KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 127
+ P+N+T S N + W + VE + +
Sbjct: 4 TADLGPSSVPTPTNVTIESYNMNPIVYWEYQIMPQVP---VFTVEVKNYGVKNSEWIDAC 60
Query: 128 SGTYTR-----AENLIEGHDYNFRVKAVNKIGESL-----------------PLVCQSP- 164
+ RVKA ES P +
Sbjct: 61 INISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKE 120
Query: 165 -----ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPW 219
I P + Q D + + GS QY I + +
Sbjct: 121 EKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNGS-EIQYKILTQKEDDCD 179
Query: 220 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGP--GEPSK 260
E C + ++P +Y V E SK
Sbjct: 180 EIQCQL-------AIPVSSLNSQYCVSAEGVLHVWGVTTEKSK 215
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 31.1 bits (70), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 1483 ASLVVKNSQRSDGGQYRLQ-LKNPAGFDTATLHVRVLDRPHPP 1524
ASL+++N ++D G Y L +K+ + AT RV +P
Sbjct: 72 ASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV----YPE 110
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 31.8 bits (72), Expect = 1.5
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
PQS EG S FTC + L W+ E +S + + + + + +
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYR--WETAKSPEAL-------FVMTLNGDEKK 57
Query: 2077 IDRFSIQ 2083
R S
Sbjct: 58 KGRISAT 64
Score = 31.8 bits (72), Expect = 1.9
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 16/91 (17%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWF--HNNQELK--------QSVKFMKRY----- 2144
PQS EG S FTC + L W+ + + K R
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 2145 -AGDDYTFVINRTKMEDRGEYIIRAENHYGY 2174
I ++ ED Y+ +
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLCARNTGNQF 97
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 31.7 bits (72), Expect = 1.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 2041 TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+TW N Q + + V + D++F+
Sbjct: 121 NITWLSNGQSVTEGVSETSFLSKSDHSFF 149
Score = 31.0 bits (70), Expect = 3.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+TW N Q + + V + D++F
Sbjct: 121 NITWLSNGQSVTEGVSETSFLSKSDHSF 148
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 30.4 bits (68), Expect = 2.0
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 2204 DVIWLHNNKEI------KPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFS 2257
+V W + + A+ + LKI + +DSG Y ++ G
Sbjct: 29 EVRWERGSTLVAEFKRKPFLKSGAFE-ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 87
Query: 2258 SCTLLVQV 2265
L +++
Sbjct: 88 DKALDLRI 95
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.3 bits (68), Expect = 2.0
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 1473 RVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRV 1517
++ L SL++KN D G Y +++ P + L +++
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKL 106
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 30.7 bits (69), Expect = 2.0
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 1468 DDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKN-PAGFDTATLHVRV 1517
T + + A+L + D G Y + P G +RV
Sbjct: 78 AKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 32.0 bits (72), Expect = 2.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
+L++ I E++G Y CE ++ + L V S
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119
Score = 30.4 bits (68), Expect = 6.0
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 1477 QLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHPPENLHADEFAGDS 1536
+L ASL + Q + G+YR ++ T+ + V+ P L +
Sbjct: 76 RLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENE 135
Query: 1537 LTL 1539
Sbjct: 136 DKY 138
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 31.7 bits (72), Expect = 2.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 2041 TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+TW N++ + V + DY+F+
Sbjct: 152 NITWLRNSKSVADGVYETSFFVNRDYSFH 180
Score = 31.0 bits (70), Expect = 3.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+TW N++ + V + DY+F
Sbjct: 152 NITWLRNSKSVADGVYETSFFVNRDYSF 179
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A
{Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A*
2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A
2f25_A* 2f26_A 2f27_A*
Length = 382
Score = 31.9 bits (71), Expect = 2.6
Identities = 40/303 (13%), Positives = 77/303 (25%), Gaps = 56/303 (18%)
Query: 1032 NHGGRPITDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSK 1091
G + + +T +W P D + I E A G
Sbjct: 107 IPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHC 166
Query: 1092 LSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQI 1151
L R+ + V + + + L D+ T V + Q+
Sbjct: 167 LQLNDRARSLVVPAYAYRKLHPIQ---RPIPSAFCFLSHDHGRTWARGHFVAQDTLECQV 223
Query: 1152 VDWDTNNATLMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGYQQCHADVGQTPHGWWLQ 1211
+ +T ++ R+ +V+ +ST + G
Sbjct: 224 AEVETGEQRVVTLNARSHLR-----ARVQAQST---------------NDGLDFQESQ-- 261
Query: 1212 DSRIQGRIQSPFDPPDAPSQPEVTGYS--------PSSVSLAWNPPANHGGRPITGYYVE 1263
++ +PP Q V + P+ L +P + + Y
Sbjct: 262 ------LVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNP 315
Query: 1264 KRERGGEWLRANN-------YPT-------TNLNFTVHDLREGGKYE---FRVIAINEAG 1306
+ W Y + + L E YE F + + +A
Sbjct: 316 RPPAPEAWSEPVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAF 375
Query: 1307 PGK 1309
P +
Sbjct: 376 PAE 378
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.3 bits (68), Expect = 2.8
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 26/115 (22%)
Query: 2097 VIKPQSAFCYEGQSVKFTCRVIAIATPT---LTWF-------------HNNQELKQSVKF 2140
+ P+S VK C + + W + + Q K+
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 2141 -----MKRYAGDDYTFVINRTKMEDRGEY----IIRAEN-HYGYREEVVFLNVQR 2185
+ D + IN +M+DR Y + + + R++++ L V++
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 31.6 bits (71), Expect = 2.9
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 2234 AEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVSWYKDGNPVSDDPATYQFTQIGQTY--- 2290
++F S TC + + VQ++W + + + Q T
Sbjct: 123 FDLFIRKSPTITCLVVD-----LAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVT 177
Query: 2291 -KMKILSTTLDDVGQYSAQ 2308
+ + + + Y +
Sbjct: 178 STLPVGTRDWIEGETYQCR 196
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A
{Gallus gallus}
Length = 231
Score = 31.5 bits (71), Expect = 2.9
Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 24/150 (16%)
Query: 2013 FVIKPQSAFCYEGQSVKFTCRVIAIATP---TLTWFHNNQE-LKQSVKFMKRYAGDDYTF 2068
+ I P Y K C V+ + + ++TW L+ ++ + Y+
Sbjct: 16 YAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSA 75
Query: 2069 YSSL--RKLQIDR---FSIQDTSFDRRQAAPRFVIKPQSAFCYE-------------GQS 2110
S++ F+ + + V +
Sbjct: 76 SSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSR 135
Query: 2111 VKFTCRVIAIATP--TLTWFHNNQELKQSV 2138
V +C V + W +++ + +
Sbjct: 136 VTLSCLVRGFRPRDIEIRWLRDHRAVPATE 165
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C
1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C
2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*
Length = 199
Score = 31.3 bits (71), Expect = 3.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 2041 TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+TW N++ + V + DY+F+
Sbjct: 122 NITWLRNSKSVTDGVYETSFFVNRDYSFH 150
Score = 30.9 bits (70), Expect = 4.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 2124 TLTWFHNNQELKQSVKFMKRYAGDDYTF 2151
+TW N++ + V + DY+F
Sbjct: 122 NITWLRNSKSVTDGVYETSFFVNRDYSF 149
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 31.1 bits (70), Expect = 3.5
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 16/111 (14%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWF--HNNQELK--------QSVKFMKRY----- 2144
P + EG+++ C A L WF + L Q + R
Sbjct: 7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD 66
Query: 2145 -AGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLNVQRKYDLPVIHY 2194
+ T I ++ D Y+ G F P I
Sbjct: 67 KSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQN 117
Score = 30.3 bits (68), Expect = 6.2
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
P + EG+++ C A L WF Q+ + + + SS R+
Sbjct: 7 PAALSVPEGENLVLNCSFTDSAIYNLQWFR--QDPGKGLTSLLLI-------QSSQREQT 57
Query: 2077 IDRFSIQ 2083
R +
Sbjct: 58 SGRLNAS 64
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.0 bits (72), Expect = 3.5
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 1002 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSL 1061
SP P +P+ P YSP+S S + P+ P SP +P S S
Sbjct: 1642 SPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSPTSPS--------YSPTSPSY 1690
Query: 1062 SWKPPLDDGGSPITNYVVEKYESATGFWSKLSS--FVRSPAY 1101
S P SP + Y + +S S SP+Y
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.0 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 2108 GQSVKFTCRVIAIATPTLTWF--HNNQELKQSV----KFMKRYAGDDYTFVINRTKMEDR 2161
VKF C + LTWF +Q+ ++ V + ++ G YT I + ED
Sbjct: 32 SSMVKFHCY--TNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDN 89
Query: 2162 GEY 2164
G Y
Sbjct: 90 GIY 92
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.7 bits (69), Expect = 4.6
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWF--HNNQELK-------QSVKFMKRY------ 2144
P EG V+ C L W+ H + ++ R+
Sbjct: 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSR 65
Query: 2145 AGDDYTFVINRTKMEDRGEYIIRAENHYGYREEV 2178
+ ++ +M+D Y+ + G
Sbjct: 66 SKGYSYLLLKELQMKDSASYLCAVQASGGSYIPT 99
Score = 30.3 bits (68), Expect = 5.2
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
P EG V+ C L W+ Q ++ F+ ++ +
Sbjct: 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQ--QHAGEAPTFL--------SYNVLDGLEE 55
Query: 2077 IDRFSIQ 2083
RFS
Sbjct: 56 KGRFSSF 62
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 30.8 bits (69), Expect = 4.6
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 25/131 (19%)
Query: 2011 PRFVIKPQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYS 2070
P + +G+ V+ C I+ L W+ Q L Q +F+ + G S
Sbjct: 33 PSNKVTE------KGKYVELRCDPIS-GHTALYWYR--QSLGQGPEFLIYFQGTGAADDS 83
Query: 2071 SLRKLQIDRFSIQD----------TSFDRRQAAPRFVIKPQSAFCYE---GQSVKFTCRV 2117
L DRF +R +A G + +
Sbjct: 84 GLPN---DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDL 140
Query: 2118 IAIATPTLTWF 2128
+ P + F
Sbjct: 141 KNVFPPEVAVF 151
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine
recycling, refol transferase; HET: SR1 ADP; 1.90A
{Arabidopsis thaliana}
Length = 420
Score = 31.1 bits (69), Expect = 5.0
Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 14/141 (9%)
Query: 1711 KTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI-NLHDAFEDDDEMVLIFEFLSG 1769
+ G I ++ ++ ++ + + H F + E+ + E +
Sbjct: 127 RKGLIAGIEYPFLADHMSDYMAKTLFFTSLLYHDTTEHRRAVTEFCGNVELCRLTEQVVF 186
Query: 1770 GELFE-----RITAPDYKMSEAEVINY--MRQVCEAVKHM---HEKNIIHLDVKPENIMC 1819
+ + R T+P V ++ +K M + +IH D+ ++M
Sbjct: 187 SDPYRVSTFNRWTSPYLDDDAKAVREDSALKLEIAELKSMFCERAQALIHGDLHTGSVMV 246
Query: 1820 QTRNSTNVKMIDFGLATKLDP 1840
+ ++ID +
Sbjct: 247 ---TQDSTQVIDPEFSFYGPM 264
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 29.4 bits (66), Expect = 5.4
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 1479 TMNSASLVVKNSQRSDGGQYRLQLKN-PAGFDTATLHVRVLDRP 1521
+ +ASL + + D G Y P G + + +RVL +P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 29.4 bits (66), Expect = 5.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 2230 TLKIAEIFPEDSGVYTCEAFNDEGESFSSCT-LLVQV 2265
+L++ + ED G YTC S S L V
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X*
3bib_X*
Length = 116
Score = 29.2 bits (65), Expect = 5.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 1477 QLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHVRVLDRPHP 1523
++ SL + N+ R D G Y +++ P F+ +VR+ R
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRAL 113
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 30.4 bits (68), Expect = 5.5
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
PQS +G++ C L W+ Q+ + + + K
Sbjct: 8 PQSLVVRQGENCVLQCNYSVTPDNHLRWYK--QDTGKGLVLLTVL-------VDQKDKTS 58
Query: 2077 IDRFSIQ 2083
R+S
Sbjct: 59 NGRYSAT 65
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family,
calcium- independent, blood clotting; 1.87A {Homo
sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Length = 160
Score = 29.8 bits (67), Expect = 6.2
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 911 HGGGWVPAVNHVSPY---DHHATVPRLLEGTTYEFRVRAENLQGLSEPITTKEPVVAKNQ 967
W N+ + D ++ A QG +
Sbjct: 44 RVNAWQAKANNNKQWLEIDLLKIK-----------KITAIITQGCKSLSSEMYVKSYTIH 92
Query: 968 YGKELDKWTNYDVLKEICQIHLPQIVDGKPVIAKSPFDPP 1007
Y ++ +W Y + + + K K+ F+PP
Sbjct: 93 YSEQGVEWKPYRLKSSMVDKIFEGNTNTKGH-VKNFFNPP 131
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 30.2 bits (68), Expect = 6.3
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 2013 FVIKPQSAFCYEGQSVKFTCRVIAIATP---TLTWFHNNQELKQSVKFMKRYAGDDYTFY 2069
+ +P G TC + + T TW ++ + +R Y+
Sbjct: 7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQ-GPPERDLCGCYSVS 65
Query: 2070 SSLR 2073
S L
Sbjct: 66 SVLP 69
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural
genomics, PSI, protein structure initiative; 1.80A {Mus
musculus} SCOP: b.1.1.4
Length = 122
Score = 29.5 bits (65), Expect = 6.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 2228 VHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQVS 2266
V L I D+G Y+C N + +S ++ + V
Sbjct: 78 VFVLHFKPIHLSDNGSYSCST-NFNSQVINSHSVTIHVR 115
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A
3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F
2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A
3bzd_A ...
Length = 238
Score = 30.3 bits (68), Expect = 6.5
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
P++ G V +C+ + W+ Q+ ++ + G T +
Sbjct: 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYR--QDTGHGLRLIHYSYGAGSTEKGDIP--- 59
Query: 2077 IDRFSIQDTS 2086
D + S
Sbjct: 60 -DGYKASRPS 68
Score = 29.9 bits (67), Expect = 8.0
Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 23/103 (22%)
Query: 2100 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFM------------------ 2141
P++ G V +C+ + W+ Q+ ++ +
Sbjct: 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYR--QDTGHGLRLIHYSYGAGSTEKGDIPDGY 62
Query: 2142 --KRYAGDDYTFVINRTKMEDRGEYIIRAENHYGYREEVVFLN 2182
R + + ++ ++ Y + G E F
Sbjct: 63 KASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGP 105
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 6.6
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 2206 IWLHNNKEIKPSNDF--AYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLV 2263
I + K F ++ +L IA+ P DS Y C A ++ F T LV
Sbjct: 47 IAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRI-FFGDGTQLV 105
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 30.4 bits (69), Expect = 6.6
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 2205 VIWLHNNKEIKPSNDFAYSSVAHVHTLKIAEIFPEDSGVYTCEAFNDEGESFSSCTLLVQ 2264
+I + + F+ S TL I + ED G+Y C+ N +F + T L +
Sbjct: 183 LIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNSWPHTFGTGTKL-E 241
Query: 2265 VSWYKDGNPVSDD 2277
+ D
Sbjct: 242 LKRADAAAASGAD 254
>2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional
signaling, tumorigenesis, angiogenesis, signaling
protein, structural genomics; 2.30A {Homo sapiens}
Length = 208
Score = 30.0 bits (67), Expect = 7.0
Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 18/109 (16%)
Query: 1138 FPFTVPDPPGQPQIVD-WDTNNAT--LMWDRPRTDGGSKIQGYKVEFRSTRTATDCGLGY 1194
F V D+ AT L W G ++ GY + RT Y
Sbjct: 19 FAAMVHHHHHHSAEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRT-------Y 71
Query: 1195 QQCHADVGQTPHGWWLQDSRIQGR------IQSPFDPPDAPSQPEVTGY 1237
Q C+ + WL+ I+ R ++ F D S P V G
Sbjct: 72 QVCNVFESSQNN--WLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGS 118
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.8 bits (69), Expect = 7.2
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 1002 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSL 1061
SP P +P+ P YSP+S S + PA P SP P +P S S
Sbjct: 1634 SPTSPSYSPTSP---SYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSY 1689
Query: 1062 SWKPPLDDGGSP 1073
S P SP
Sbjct: 1690 SPTSPNYSPTSP 1701
Score = 30.4 bits (68), Expect = 9.7
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 1002 SPFDPPDAPSQPEVTGYSPSSVSLAWNPPANHGGRPITDKPSPPQGPLDVSDITPESCSL 1061
P +P+ P YSP+S + + P+ P SP P +P S S
Sbjct: 1536 GVSSPGFSPTSP---TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSY 1591
Query: 1062 SWKPPLDDGGSP 1073
S P SP
Sbjct: 1592 SPTSPSYSPTSP 1603
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 30.7 bits (69), Expect = 7.4
Identities = 33/181 (18%), Positives = 54/181 (29%), Gaps = 18/181 (9%)
Query: 180 PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKE 239
K LEW + GPW+ V N + +P +
Sbjct: 387 KCKGAPKKPPQRLEWKL-NTGRTEAWK---VLSPQGGGPWDSVARVLPN-GSLFLPAVGI 441
Query: 240 GEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPKIKTPLKDIIIKAGKILNVEIQFIG 299
+E FR A+N+ G S V P P+I ++ + +
Sbjct: 442 QDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTAGVPNKVGTCVSEGS 499
Query: 300 EPPPEVTWTIDGKELKTDSVRTTVTSIGYHTIVNTVNTKRSDSGTY--HLELRNTSGRDE 357
P ++W +DGK L + V + ++G + EL T R
Sbjct: 500 YPAGTLSWHLDGKPLVPN---------EKGVSVKEQTRRHPETGLFTLQSELMVTPARGG 550
Query: 358 G 358
Sbjct: 551 D 551
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse
NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Length = 253
Score = 29.9 bits (67), Expect = 8.7
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 2025 GQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQIDRFSI 2082
GQ+V C + P ++W+ Q+L++ ++++ SL +
Sbjct: 16 GQAVNLRCILKNSQYPWMSWYQ--QDLQKQLQWLFTLRSPGDKEVKSL----PGADYL 67
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV,
immunoglobulin variable, IGC, immunoglobulin constant,
signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.7 bits (64), Expect = 8.7
Identities = 7/64 (10%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 1461 FANDSIIDDSDTRVHKQLTM--NSASLVVKNSQRSDGGQYRLQ--LKNPAGFDTATLHVR 1516
++ + ++++ + +LV+ + + D G Y+ + T +++
Sbjct: 48 SETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQ 107
Query: 1517 VLDR 1520
+ R
Sbjct: 108 IYRR 111
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 29.6 bits (66), Expect = 8.8
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 14/103 (13%)
Query: 2017 PQSAFCYEGQSVKFTCRVIAIATPTLTWFHNNQELKQSVKFMKRYAGDDYTFYSSLRKLQ 2076
E + C PTL W+ Q + + + + ++ K
Sbjct: 7 QGQVTLSENDFLFINCTYSTTGYPTLFWYV--QYSGEGPQLLLQV-------TTANNKGS 57
Query: 2077 IDRFSIQ----DTSFDRRQAAPRFVIKPQSAFCYEGQSVKFTC 2115
F TSF ++ + + I +C
Sbjct: 58 SRGFEATYDKGTTSFHLQKTSVQ-EIDSAVYYCAANSGTYQRF 99
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A*
3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A*
3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A*
1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.5 bits (66), Expect = 9.2
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 2010 APRFVIKPQSA--FCYEGQSVKFTCRVIAIATP----TLTWFHNNQELKQSV-KFMKRYA 2062
P + P ++ + TC V+ ++ W+ + E+ + K +
Sbjct: 1 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQY 60
Query: 2063 GDDYTFYSSLR 2073
Y S L
Sbjct: 61 NSTYRVVSVLT 71
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 30.5 bits (69), Expect = 9.4
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 683 KQRFLAPKIKTPLKDIIIKAGKILNVE--IQFIGEPPPEVTWTIDGKELKTDSVRTTVTS 740
++RFL P I+ P KD+ +++ E +F G+ + +T++ + + V +
Sbjct: 466 RKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLT 525
Query: 741 IGYHTIVNTVN 751
G T +N N
Sbjct: 526 AGEATPINLTN 536
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: MSE
ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A*
4dca_A* 3hav_A* 3ham_A*
Length = 320
Score = 30.1 bits (67), Expect = 9.5
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
Query: 1803 HEKNIIHLDVKPENIMCQTRNSTNVKMIDFGLATKLDP-NEVVKISTGTAEFAAPEIVER 1861
+ ++H D N++ RN+ +IDFG DP N+ + + + + E +
Sbjct: 205 YTPCLVHNDFSANNMI--FRNNRLFGVIDFGDFNVGDPDNDFLCLLDCSTDDFGKEFGRK 262
Query: 1862 EPVGFYTDMWAVGVLAYVLDVAEDTNWRVANDYLVKDPTYIVHSLLQGHDYE 1913
VL Y A + R A V + + ++ G++ +
Sbjct: 263 -------------VLKYYQHKAPEVAERKAELNDV---YWSIDQIIYGYERK 298
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.413
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 36,948,018
Number of extensions: 2336725
Number of successful extensions: 14961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10170
Number of HSP's successfully gapped: 4084
Length of query: 2324
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2215
Effective length of database: 3,658,404
Effective search space: 8103364860
Effective search space used: 8103364860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.9 bits)