BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1242
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 78/96 (81%)
Query: 15 FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
F Y + + I GR+YNDLNQYPVFPWV+TNY+S+ELDL+L TN+RDLSKPIGALNP R A
Sbjct: 148 FEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAA 207
Query: 75 YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
+F ERY SWE + + FHYGTHYST +VL WL+R+
Sbjct: 208 FFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRI 243
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%)
Query: 15 FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
F Y + I GRTYNDLNQYPVFPWVLTNY+S+ELDL+L N+RDLSKPIGALNP R
Sbjct: 148 FEYLXFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAV 207
Query: 75 YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
++ ERY +WE + P+HY THYST L+WLVR+
Sbjct: 208 FYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRI 243
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY------------ 379
S L +R CF + D +FL A G D R++ +N +IV I+ GH
Sbjct: 121 SSDLYIRSVCF--SPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 380 -------GVVTSRIVQIIFGHYGVVTCLSRSECNITAD----CFIASGSADCTVLLWHWN 428
G T RI + G + + + +IA+GS D V +W +
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW--D 235
Query: 429 ARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS 470
+ T +V D+ T GH+ V SV + + VVSGS
Sbjct: 236 SETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGS 275
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 413 IASGSADCTVLLWH-WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
+ SGS D +V LW+ NA +S ++ T T GH+ V SVA + ++SGS+
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 472 LGPVL 476
VL
Sbjct: 331 DRGVL 335
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 18/65 (27%)
Query: 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG 469
D +I SGS D VL W + + P L GH V SVA V +G
Sbjct: 322 DEYILSGSKDRGVLFW-----------DKKSGNPLLMLQGHRNSVISVA-------VANG 363
Query: 470 SQLGP 474
S LGP
Sbjct: 364 SSLGP 368
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 49/196 (25%)
Query: 332 SQKLRVRHNCFVTTV----DSRFLLACGFWDNSFRV-----------------------F 364
+Q+ H+ FV V D +F L+ G WD R+ F
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALS-GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Query: 365 STDNARIVQI-------IFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417
S DN +IV ++ G I + GH V+C+ S T I S S
Sbjct: 481 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN--TLQPTIVSAS 538
Query: 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477
D TV +W+ R+TL GH V++VA+S + L SG + G VL+
Sbjct: 539 WDKTVKVWN-----------LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587
Query: 478 -HTTFGDLLRSLDPPS 492
G L SL+ S
Sbjct: 588 WDLAEGKKLYSLEANS 603
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 392 GHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH +V +C +TAD + S S D T+ LW GET GH
Sbjct: 57 GHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQRFVGH 100
Query: 451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVV 501
+ V SV I + +++SGS+ + V T G L +L + + S VV
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 151
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 392 GHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH +V +C +TAD + S S D T+ LW GET GH
Sbjct: 63 GHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQRFVGH 106
Query: 451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVV 501
+ V SV I + +++SGS+ + V T G L +L + + S VV
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 392 GHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH +V +C +TAD + S S D T+ LW GET GH
Sbjct: 63 GHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQRFVGH 106
Query: 451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVV 501
+ V SV I + +++SGS+ + V T G L +L + + S VV
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 392 GHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH +V +C +TAD + S S D T+ LW GET GH
Sbjct: 63 GHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQRFVGH 106
Query: 451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
+ V SV I + +++SGS+ + V T G L +L
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 392 GHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH +V +C +TAD + S S D T+ LW GET GH
Sbjct: 63 GHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQRFVGH 106
Query: 451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
+ V SV I + +++SGS+ + V T G L +L
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG 392
+++ V H V VD +D+ + + S R +++ + T V+ + G
Sbjct: 249 RRVLVGHRAAVNVVD---------FDDKY-IVSASGDRTIKV----WNTSTCEFVRTLNG 294
Query: 393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ 452
H + CL D + SGS+D T+ LW + + L GHE+
Sbjct: 295 HKRGIACLQ------YRDRLVVSGSSDNTIRLW-----------DIECGACLRVLEGHEE 337
Query: 453 PVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP--PSGFASPESVVMSREGVIVV 510
V + + +VSG+ G + V DL+ +LDP P+G ++V V +
Sbjct: 338 LVRCIRFDNK--RIVSGAYDGKIKVW----DLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391
Query: 511 NYERGHIAAFTMNGNRLRHESHND 534
++ I + + + L + ND
Sbjct: 392 QFDEFQIVSSSHDDTILIWDFLND 415
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 387 VQIIFGHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRA 445
V+ GH +V +C +TAD + S S D T+ LW GET
Sbjct: 58 VRSFKGHSHIV-----QDCTLTADGAYALSASWDKTLRLW------DVATGET-----YQ 101
Query: 446 TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSRE 505
GH+ V SV I + ++SGS+ + V T G L +L + + S VV + +
Sbjct: 102 RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 506 G-----VIVVNYERGHIAAFTMNGNRLRHE--SHNDNL 536
I+ + A+ +N ++ + HN N+
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 114 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 157
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 493 GF 494
F
Sbjct: 218 SF 219
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 116 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 159
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 493 GF 494
F
Sbjct: 220 SF 221
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 109 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 152
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 493 GF 494
F
Sbjct: 213 SF 214
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 88 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 131
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 493 GF 494
F
Sbjct: 192 SF 193
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 135
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 493 GF 494
F
Sbjct: 196 SF 197
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 141
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 493 GF 494
F
Sbjct: 202 SF 203
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 135
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 493 GF 494
F
Sbjct: 196 SF 197
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 97 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 140
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 493 GF 494
F
Sbjct: 201 SF 202
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 93 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 136
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 493 GF 494
F
Sbjct: 197 SF 198
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 141
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 493 GF 494
F
Sbjct: 202 SF 203
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 141
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 493 GF 494
F
Sbjct: 202 SF 203
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 138
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 493 GF 494
F
Sbjct: 199 SF 200
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 138
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 493 GF 494
F
Sbjct: 199 SF 200
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 91 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 134
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 493 GF 494
F
Sbjct: 195 SF 196
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 138
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 493 GF 494
F
Sbjct: 199 SF 200
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 138
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 493 GF 494
F
Sbjct: 199 SF 200
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S + T IAS S D TV LW+ N +
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQT----IASASDDKTVKLWNRNGQL------------L 460
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSR 504
TLTGH V VA S + + S S V + G LL++L S +S V S
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVRGVAFSP 518
Query: 505 EG-VIVVNYERGHIAAFTMNGNRLR 528
+G I + + + NG L+
Sbjct: 519 DGQTIASASDDKTVKLWNRNGQLLQ 543
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------L 501
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
TLTGH V VA S + + S S V + G LL++L
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 545
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------L 91
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
TLTGH V VA S + + S S V + G LL++L
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 135
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------L 132
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
TLTGH V VA S + + S S V + G LL++L
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 176
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------L 214
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
TLTGH V VA S + + S S V + G LL++L
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 258
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQ------------HL 337
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSR 504
TLTGH V VA S + + S S V + G LL++L S +S V S
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVRGVAFSP 395
Query: 505 EG-VIVVNYERGHIAAFTMNGNRLR 528
+G I + + + NG L+
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQ 420
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++Q + GH V ++ S T IAS S D TV LW+ N +
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------L 255
Query: 445 ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
TLTGH V VA + + S S V + G LL++L
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT 446
+Q + GH V ++ S T IAS S D TV LW+ N + T
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQL------------LQT 380
Query: 447 LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL 488
LTGH V VA S + + S S V + G LL++L
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 422
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL 472
IAS S D TV LW+ N + TLTGH V VA S + + S S
Sbjct: 31 IASASDDKTVKLWNRNGQL------------LQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 473 GPVLVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLR 528
V + G LL++L S +S V S +G I + + + NG L+
Sbjct: 79 KTVKLWNRNGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGE 437
+ V + + ++ + GH V C CN I SGS D +V +W +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFC-----CNFNPQSNLIVSGSFDESVRIW-----------D 138
Query: 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL----DPPS 492
T TL H PV++V + + L+VS S G + T G L++L +PP
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 493 GF 494
F
Sbjct: 199 SF 200
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 27/152 (17%)
Query: 282 DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC 341
D +I S +TPGS LTL + T T +P HL + S +
Sbjct: 39 DTGITIYCASEEQTPGSTG----LTLQELFTIQTG-----LPTLHLSFSSSCSYSENLHD 89
Query: 342 FVTTVDSR----FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV 397
V+S LAC DN+ R+ T N I+ T ++ GH+ V
Sbjct: 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------TQHVLGGKSGHHNFV 139
Query: 398 TCLSRSEC----NITADCFIASGSADCTVLLW 425
+ ++ N A+ IAS DCT+++W
Sbjct: 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 27/152 (17%)
Query: 282 DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC 341
D +I S +TPGS LTL + T T +P HL + S +
Sbjct: 40 DTGITIYCASEEQTPGSTG----LTLQELFTIQTG-----LPTLHLSFSSSCSYSENLHD 90
Query: 342 FVTTVDSR----FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV 397
V+S LAC DN+ R+ T N I+ T ++ GH+ V
Sbjct: 91 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------TQHVLGGKSGHHNFV 140
Query: 398 TCLSRSEC----NITADCFIASGSADCTVLLW 425
+ ++ N A+ IAS DCT+++W
Sbjct: 141 NDIDIADVYSADNRLAEQVIASVGDDCTLIIW 172
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
F SGS D T+ LW + T T GH + V SVA S++ +VSGS+
Sbjct: 77 FALSGSWDGTLRLW-----------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 472 LGPVLVHTTFG 482
+ + T G
Sbjct: 126 DKTIKLWNTLG 136
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
I S S D T+++W + ET+ P+ L GH V+ V IS++ +SGS
Sbjct: 30 MILSASRDKTIIMW------KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 83
Query: 472 LGPV 475
G +
Sbjct: 84 DGTL 87
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
F SGS D T+ LW + T T GH + V SVA S++ +VSGS+
Sbjct: 100 FALSGSWDGTLRLW-----------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 472 LGPVLVHTTFG 482
+ + T G
Sbjct: 149 DKTIKLWNTLG 159
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
I S S D T+++W + ET+ P+ L GH V+ V IS++ +SGS
Sbjct: 53 MILSASRDKTIIMW------KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106
Query: 472 LGPV 475
G +
Sbjct: 107 DGTL 110
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 29/135 (21%)
Query: 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCL 400
C + D RF+ C D +++++ +T +V H V C
Sbjct: 668 CCAFSTDDRFIATCSV-DKKVKIWNS---------------MTGELVHTYDEHSEQVNCC 711
Query: 401 SRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS 460
+ N + +A+GS+DC + LW N + R T+ GH V S
Sbjct: 712 HFT--NSSHHLLLATGSSDCFLKLWDLNQK-----------ECRNTMFGHTNSVNHCRFS 758
Query: 461 AELGLVVSGSQLGPV 475
+ L+ S S G +
Sbjct: 759 PDDKLLASCSADGTL 773
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ ++ H V CLS N ++ +A+GSAD TV LW
Sbjct: 264 TSKPSHLVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 303
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ ++ H V CLS N ++ +A+GSAD TV LW
Sbjct: 264 TSKPSHLVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 303
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS 470
+ SGS D TV++W Q+ P LTGH V+ +A+S E +S S
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGY----FGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE 451
GH V+ L+ S+ N CF S S D T+ LW + T T GH+
Sbjct: 74 GHNHFVSDLALSQEN----CFAISSSWDKTLRLW-----------DLRTGTTYKRFVGHQ 118
Query: 452 QPVTSVAISAELGLVVSGSQLGPVLVHTTFGD 483
V SVA S + ++S + + G+
Sbjct: 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ + H V CLS N ++ +A+GSAD TV LW
Sbjct: 266 TSKPSHTVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ + H V CLS N ++ +A+GSAD TV LW
Sbjct: 268 TSKPSHTVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ + H V CLS N ++ +A+GSAD TV LW
Sbjct: 270 TSKPSHTVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
TS+ + H V CLS N ++ +A+GSAD TV LW
Sbjct: 262 TSKPSHSVDAHTAEVNCLS---FNPYSEFILATGSADKTVALW 301
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 376 FGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426
G G V + V ++ GH V ++ N D IASGS DCTV++W
Sbjct: 64 LGKTGRV-DKNVPLVXGHTAPVLDIAWXPHN---DNVIASGSEDCTVMVWE 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,263,022
Number of Sequences: 62578
Number of extensions: 745491
Number of successful extensions: 1624
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 148
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)