Query psy1242
Match_columns 540
No_of_seqs 471 out of 3395
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:51:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 100.0 2.8E-69 9.6E-74 544.5 5.6 218 2-226 135-413 (414)
2 1vyh_C Platelet-activating fac 100.0 8.9E-29 3E-33 259.0 31.2 244 259-540 115-387 (410)
3 3ow8_A WD repeat-containing pr 100.0 1.4E-28 4.8E-33 249.1 28.0 232 253-522 81-319 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 2.6E-28 8.8E-33 244.7 29.1 254 233-540 11-277 (304)
5 3ow8_A WD repeat-containing pr 100.0 7.2E-29 2.5E-33 251.2 24.7 257 233-540 30-297 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 6.1E-28 2.1E-32 245.9 31.1 245 259-540 62-319 (340)
7 2pbi_B Guanine nucleotide-bind 100.0 1.2E-27 3.9E-32 245.6 32.5 256 234-540 63-333 (354)
8 4gqb_B Methylosome protein 50; 100.0 4.6E-28 1.6E-32 247.9 24.2 250 255-540 33-306 (344)
9 4gqb_B Methylosome protein 50; 100.0 1.1E-27 3.9E-32 245.0 27.0 226 267-527 96-334 (344)
10 1nr0_A Actin interacting prote 100.0 4E-27 1.4E-31 259.2 31.2 248 255-539 62-373 (611)
11 4g56_B MGC81050 protein; prote 100.0 1.2E-27 4.2E-32 245.8 24.9 261 243-540 33-318 (357)
12 3iz6_a 40S ribosomal protein R 100.0 2.6E-27 8.8E-32 245.2 25.9 240 263-525 77-376 (380)
13 2ymu_A WD-40 repeat protein; u 100.0 1.5E-26 5.2E-31 251.1 32.3 263 253-540 263-556 (577)
14 1vyh_C Platelet-activating fac 100.0 7.4E-27 2.5E-31 244.4 25.5 234 251-522 149-409 (410)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-26 4.3E-31 236.8 25.8 254 237-540 18-310 (345)
16 3frx_A Guanine nucleotide-bind 99.9 5.3E-26 1.8E-30 229.5 28.9 168 339-540 68-244 (319)
17 2ymu_A WD-40 repeat protein; u 99.9 1.9E-25 6.5E-30 242.5 32.0 262 254-540 223-515 (577)
18 4g56_B MGC81050 protein; prote 99.9 7.5E-26 2.6E-30 232.4 26.0 229 258-523 100-342 (357)
19 2xzm_R RACK1; ribosome, transl 99.9 3.1E-25 1.1E-29 226.0 30.1 208 263-539 38-261 (343)
20 4ery_A WD repeat-containing pr 99.9 3.8E-25 1.3E-29 221.5 29.7 245 260-540 31-286 (312)
21 2hes_X YDR267CP; beta-propelle 99.9 1.5E-25 5.1E-30 227.4 26.5 238 266-539 26-301 (330)
22 2pm7_B Protein transport prote 99.9 2.6E-25 8.8E-30 222.0 26.9 240 233-523 7-284 (297)
23 1got_B GT-beta; complex (GTP-b 99.9 2.9E-25 9.9E-30 226.0 27.7 227 255-521 100-340 (340)
24 1erj_A Transcriptional repress 99.9 8.1E-25 2.8E-29 227.4 29.5 255 251-540 63-359 (393)
25 4h5i_A Guanine nucleotide-exch 99.9 4.4E-25 1.5E-29 227.4 26.5 171 339-523 136-342 (365)
26 1erj_A Transcriptional repress 99.9 6.2E-25 2.1E-29 228.3 27.0 248 256-523 127-388 (393)
27 2ynn_A Coatomer subunit beta'; 99.9 4.9E-25 1.7E-29 220.8 24.5 235 255-524 58-302 (304)
28 2pbi_B Guanine nucleotide-bind 99.9 1.3E-24 4.4E-29 222.9 26.1 227 255-521 109-354 (354)
29 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.6E-24 8.8E-29 219.6 26.6 247 255-528 64-340 (345)
30 1gxr_A ESG1, transducin-like e 99.9 1.5E-23 5.2E-28 210.2 31.1 245 255-539 54-312 (337)
31 1k8k_C P40, ARP2/3 complex 41 99.9 1.7E-24 5.7E-29 220.9 23.3 239 263-524 19-274 (372)
32 1nr0_A Actin interacting prote 99.9 2.8E-24 9.6E-29 236.5 25.8 231 259-530 25-277 (611)
33 2hes_X YDR267CP; beta-propelle 99.9 4.7E-24 1.6E-28 216.3 25.3 239 256-524 62-328 (330)
34 3dm0_A Maltose-binding peripla 99.9 6.7E-24 2.3E-28 236.8 28.8 222 251-539 381-608 (694)
35 4aow_A Guanine nucleotide-bind 99.9 1.2E-23 4E-28 211.8 27.8 255 233-539 36-312 (340)
36 3bg1_A Protein SEC13 homolog; 99.9 2.8E-25 9.6E-30 223.9 15.2 242 233-523 11-292 (316)
37 1r5m_A SIR4-interacting protei 99.9 1.2E-23 4.3E-28 217.6 27.2 249 257-525 50-363 (425)
38 3frx_A Guanine nucleotide-bind 99.9 2.3E-23 8E-28 210.1 28.3 199 255-526 68-269 (319)
39 3f3f_A Nucleoporin SEH1; struc 99.9 2.5E-23 8.4E-28 208.5 27.4 222 232-530 8-344 (351)
40 3odt_A Protein DOA1; ubiquitin 99.9 1.9E-23 6.5E-28 207.5 26.3 241 266-537 31-310 (313)
41 3gre_A Serine/threonine-protei 99.9 3.6E-24 1.2E-28 224.5 20.9 236 258-530 69-366 (437)
42 2xzm_R RACK1; ribosome, transl 99.9 1.4E-23 4.9E-28 213.7 24.1 228 256-523 80-339 (343)
43 3ei3_B DNA damage-binding prot 99.9 9E-24 3.1E-28 217.6 22.1 239 265-538 87-357 (383)
44 2j04_A TAU60, YPL007P, hypothe 99.9 3.8E-23 1.3E-27 220.3 26.9 231 259-539 22-271 (588)
45 2pm9_A Protein WEB1, protein t 99.9 6.7E-23 2.3E-27 212.4 26.8 232 263-524 78-337 (416)
46 3vl1_A 26S proteasome regulato 99.9 1.3E-23 4.4E-28 218.6 21.4 246 256-539 60-341 (420)
47 4e54_B DNA damage-binding prot 99.9 1.7E-23 5.8E-28 220.3 22.4 240 266-539 134-405 (435)
48 3dw8_B Serine/threonine-protei 99.9 1.9E-23 6.6E-28 218.9 22.1 254 234-527 27-377 (447)
49 1sq9_A Antiviral protein SKI8; 99.9 1.7E-23 5.7E-28 215.8 21.1 235 266-531 28-330 (397)
50 3dwl_C Actin-related protein 2 99.9 3.6E-24 1.2E-28 219.7 15.7 237 259-523 18-280 (377)
51 4ery_A WD repeat-containing pr 99.9 1.8E-22 6.3E-27 201.9 27.3 201 302-535 28-236 (312)
52 2j04_B YDR362CP, TAU91; beta p 99.9 1.2E-23 4.1E-28 227.0 19.8 226 264-527 225-520 (524)
53 4a11_B DNA excision repair pro 99.9 1.9E-22 6.5E-27 207.8 27.8 253 234-529 42-371 (408)
54 1sq9_A Antiviral protein SKI8; 99.9 3.6E-23 1.2E-27 213.3 22.0 225 265-524 82-395 (397)
55 3v7d_B Cell division control p 99.9 1.7E-22 5.7E-27 213.5 27.4 248 264-540 132-440 (464)
56 2j04_B YDR362CP, TAU91; beta p 99.9 2.4E-24 8.1E-29 232.5 13.1 227 262-527 171-431 (524)
57 3zwl_B Eukaryotic translation 99.9 2.6E-22 9E-27 203.5 27.4 231 255-524 77-346 (369)
58 1r5m_A SIR4-interacting protei 99.9 2.2E-22 7.4E-27 208.2 26.4 236 255-524 152-425 (425)
59 2xyi_A Probable histone-bindin 99.9 2.2E-22 7.5E-27 211.6 26.5 236 255-526 131-412 (430)
60 3iz6_a 40S ribosomal protein R 99.9 2.6E-23 8.9E-28 215.0 18.5 232 290-540 63-351 (380)
61 4h5i_A Guanine nucleotide-exch 99.9 1.4E-22 4.6E-27 208.8 23.4 199 235-480 133-341 (365)
62 3dm0_A Maltose-binding peripla 99.9 1.7E-22 5.9E-27 225.4 25.7 236 251-523 429-692 (694)
63 3jrp_A Fusion protein of prote 99.9 5.1E-22 1.8E-26 202.4 26.5 170 339-539 58-262 (379)
64 4e54_B DNA damage-binding prot 99.9 5.3E-23 1.8E-27 216.5 19.5 245 251-526 163-433 (435)
65 4aow_A Guanine nucleotide-bind 99.9 8E-22 2.7E-26 198.3 27.1 232 254-525 88-339 (340)
66 2pm7_B Protein transport prote 99.9 4.8E-22 1.7E-26 198.2 24.8 190 302-524 14-238 (297)
67 2pm9_A Protein WEB1, protein t 99.9 6E-23 2.1E-27 212.8 18.9 235 271-540 42-312 (416)
68 3ei3_B DNA damage-binding prot 99.9 1.7E-22 5.9E-27 207.9 22.1 238 253-524 119-382 (383)
69 1yfq_A Cell cycle arrest prote 99.9 7.8E-23 2.7E-27 206.1 18.7 239 264-540 23-301 (342)
70 1gxr_A ESG1, transducin-like e 99.9 1.6E-21 5.4E-26 195.5 27.3 238 262-539 19-271 (337)
71 3mkq_A Coatomer beta'-subunit; 99.9 4.4E-22 1.5E-26 225.0 25.8 241 262-539 23-276 (814)
72 3vl1_A 26S proteasome regulato 99.9 3.5E-22 1.2E-26 207.7 22.7 243 259-524 104-365 (420)
73 3zwl_B Eukaryotic translation 99.9 2.6E-21 8.8E-26 196.2 28.2 220 255-539 35-265 (369)
74 4gga_A P55CDC, cell division c 99.9 2E-21 6.9E-26 203.4 28.1 187 339-540 150-371 (420)
75 2aq5_A Coronin-1A; WD40 repeat 99.9 1E-21 3.5E-26 203.9 25.5 169 339-539 84-273 (402)
76 3lrv_A PRE-mRNA-splicing facto 99.9 4.9E-22 1.7E-26 202.1 22.2 226 262-523 46-291 (343)
77 3dwl_C Actin-related protein 2 99.9 1.4E-22 4.7E-27 207.9 18.1 208 300-540 14-258 (377)
78 4ggc_A P55CDC, cell division c 99.9 4.9E-21 1.7E-25 190.7 28.2 187 339-540 70-291 (318)
79 3i2n_A WD repeat-containing pr 99.9 1.2E-21 4E-26 198.3 24.1 243 254-523 67-352 (357)
80 4gga_A P55CDC, cell division c 99.9 2.2E-21 7.5E-26 203.1 26.3 231 257-523 152-394 (420)
81 4aez_A CDC20, WD repeat-contai 99.9 2.4E-21 8.3E-26 201.3 26.4 235 255-530 137-387 (401)
82 3i2n_A WD repeat-containing pr 99.9 5.5E-22 1.9E-26 200.7 20.4 238 266-540 33-328 (357)
83 4aez_A CDC20, WD repeat-contai 99.9 6.5E-21 2.2E-25 198.1 28.1 168 339-540 137-310 (401)
84 2w18_A PALB2, fancn, partner a 99.9 3.5E-21 1.2E-25 193.4 24.6 151 341-522 183-355 (356)
85 2aq5_A Coronin-1A; WD40 repeat 99.9 4.4E-21 1.5E-25 199.2 26.3 220 256-540 85-320 (402)
86 1pgu_A Actin interacting prote 99.9 5.1E-21 1.8E-25 208.4 28.1 249 256-540 68-346 (615)
87 4gq1_A NUP37; propeller, trans 99.9 9.9E-23 3.4E-27 211.8 13.8 254 258-524 95-389 (393)
88 1k8k_C P40, ARP2/3 complex 41 99.9 1.1E-21 3.7E-26 200.0 21.1 229 256-523 56-360 (372)
89 3k26_A Polycomb protein EED; W 99.9 1.1E-21 3.6E-26 199.1 20.5 252 266-540 37-342 (366)
90 3k26_A Polycomb protein EED; W 99.9 2.4E-22 8.2E-27 203.8 15.5 248 264-523 85-365 (366)
91 4ggc_A P55CDC, cell division c 99.9 3.6E-21 1.2E-25 191.7 22.9 230 259-523 74-314 (318)
92 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.2E-21 1.4E-25 202.8 23.7 174 339-540 152-361 (450)
93 3mmy_A MRNA export factor; mRN 99.9 1.6E-20 5.4E-25 190.3 25.1 181 339-540 89-322 (368)
94 3jro_A Fusion protein of prote 99.9 8.6E-21 2.9E-25 213.8 25.2 204 233-524 7-238 (753)
95 2oaj_A Protein SNI1; WD40 repe 99.9 6.8E-21 2.3E-25 218.6 24.7 165 339-529 61-248 (902)
96 3bg1_A Protein SEC13 homolog; 99.9 1.7E-21 5.7E-26 196.2 16.8 174 338-540 15-219 (316)
97 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-21 3.7E-26 232.4 17.3 245 255-539 964-1224(1249)
98 3sfz_A APAF-1, apoptotic pepti 99.9 1.9E-20 6.6E-25 221.6 28.1 247 251-523 614-912 (1249)
99 1p22_A F-BOX/WD-repeat protein 99.9 1.9E-20 6.5E-25 196.7 24.3 232 263-540 142-392 (435)
100 3vu4_A KMHSV2; beta-propeller 99.9 6.4E-20 2.2E-24 187.9 27.4 236 263-523 70-335 (355)
101 1pgu_A Actin interacting prote 99.9 2.7E-20 9.2E-25 202.7 25.8 238 253-531 19-291 (615)
102 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.4E-19 4.6E-24 190.5 30.1 242 264-540 129-414 (445)
103 3jrp_A Fusion protein of prote 99.9 3.4E-20 1.2E-24 188.8 24.2 160 339-523 104-286 (379)
104 3dw8_B Serine/threonine-protei 99.9 1.4E-20 4.8E-25 197.0 20.9 243 255-523 96-445 (447)
105 2j04_A TAU60, YPL007P, hypothe 99.9 3.9E-20 1.3E-24 197.2 23.8 153 339-523 132-296 (588)
106 1p22_A F-BOX/WD-repeat protein 99.9 5E-20 1.7E-24 193.5 24.2 215 263-525 182-415 (435)
107 3f3f_A Nucleoporin SEH1; struc 99.9 5.5E-20 1.9E-24 184.0 23.0 165 338-524 13-249 (351)
108 2oaj_A Protein SNI1; WD40 repe 99.8 4.6E-20 1.6E-24 211.6 24.0 230 257-530 440-739 (902)
109 3gre_A Serine/threonine-protei 99.8 1.8E-20 6.1E-25 196.3 17.8 227 279-535 48-305 (437)
110 3odt_A Protein DOA1; ubiquitin 99.8 3.1E-19 1.1E-23 176.9 25.4 183 338-540 61-273 (313)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.8 8.3E-20 2.9E-24 192.8 21.7 167 338-531 104-279 (450)
112 3vu4_A KMHSV2; beta-propeller 99.8 1.8E-19 6E-24 184.6 22.8 174 341-523 63-270 (355)
113 2ovr_B FBW7, F-BOX/WD repeat p 99.8 3.8E-19 1.3E-23 187.1 25.1 230 265-525 170-443 (445)
114 3mkq_A Coatomer beta'-subunit; 99.8 1.8E-19 6.3E-24 203.4 23.7 235 254-523 57-301 (814)
115 3v7d_B Cell division control p 99.8 1.6E-18 5.4E-23 182.9 26.8 179 339-540 165-359 (464)
116 1l0q_A Surface layer protein; 99.8 1.1E-18 3.7E-23 179.6 24.6 233 265-539 3-249 (391)
117 4a11_B DNA excision repair pro 99.8 3.5E-19 1.2E-23 183.2 20.7 216 272-523 21-275 (408)
118 1yfq_A Cell cycle arrest prote 99.8 1E-18 3.5E-23 175.8 22.7 230 255-521 59-321 (342)
119 2xyi_A Probable histone-bindin 99.8 6.5E-19 2.2E-23 185.0 21.5 180 339-540 184-385 (430)
120 3jro_A Fusion protein of prote 99.8 2.6E-19 8.7E-24 201.8 17.8 204 255-523 56-284 (753)
121 3mmy_A MRNA export factor; mRN 99.8 7.8E-19 2.7E-23 177.8 19.1 237 252-523 86-348 (368)
122 1l0q_A Surface layer protein; 99.8 1.1E-17 3.8E-22 172.0 28.0 224 266-531 46-283 (391)
123 2w18_A PALB2, fancn, partner a 99.8 8.7E-19 3E-23 176.1 18.3 180 234-480 155-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 99.8 8.6E-19 3E-23 178.1 17.1 221 267-527 88-336 (343)
125 4gq1_A NUP37; propeller, trans 99.8 7.8E-19 2.7E-23 182.3 16.2 183 338-540 138-366 (393)
126 3bws_A Protein LP49; two-domai 99.8 3.1E-17 1.1E-21 171.1 25.5 225 257-524 174-432 (433)
127 3bws_A Protein LP49; two-domai 99.8 2.2E-17 7.5E-22 172.3 24.0 241 259-539 129-406 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 4.7E-17 1.6E-21 170.4 24.8 228 274-540 159-404 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-17 3.5E-22 176.5 19.0 158 339-523 95-277 (434)
130 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.9E-15 6.7E-20 158.0 23.9 158 338-530 180-350 (415)
131 2oit_A Nucleoporin 214KDA; NH2 99.7 1.2E-16 4.2E-21 168.2 12.9 183 339-530 39-229 (434)
132 3o4h_A Acylamino-acid-releasin 99.7 1.4E-15 4.7E-20 165.8 19.0 232 236-528 22-279 (582)
133 3vgz_A Uncharacterized protein 99.7 3.7E-14 1.3E-18 143.0 26.8 228 273-539 68-319 (353)
134 2ojh_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 145.4 18.8 233 267-539 15-277 (297)
135 2ojh_A Uncharacterized protein 99.6 2.1E-14 7.3E-19 140.0 21.1 218 258-512 47-289 (297)
136 1ri6_A Putative isomerase YBHE 99.6 4.8E-14 1.6E-18 141.2 23.5 227 264-523 5-261 (343)
137 1pby_B Quinohemoprotein amine 99.6 6E-14 2.1E-18 140.1 23.3 237 266-531 3-318 (337)
138 1jmx_B Amine dehydrogenase; ox 99.6 1.1E-13 3.7E-18 139.1 22.7 243 259-533 6-335 (349)
139 1ri6_A Putative isomerase YBHE 99.6 2.3E-13 7.9E-18 136.2 24.5 236 259-523 44-307 (343)
140 1nir_A Nitrite reductase; hemo 99.6 3.9E-14 1.3E-18 153.4 20.2 233 257-527 183-462 (543)
141 1nir_A Nitrite reductase; hemo 99.6 2.4E-13 8.2E-18 147.2 26.3 251 262-536 147-423 (543)
142 3u4y_A Uncharacterized protein 99.6 3.1E-13 1.1E-17 135.3 24.7 228 263-526 9-255 (331)
143 3scy_A Hypothetical bacterial 99.6 3.5E-13 1.2E-17 137.2 24.4 176 339-539 157-357 (361)
144 3u4y_A Uncharacterized protein 99.6 5.5E-13 1.9E-17 133.5 24.8 237 266-530 54-310 (331)
145 2ecf_A Dipeptidyl peptidase IV 99.6 7.6E-14 2.6E-18 156.1 19.6 253 263-536 47-381 (741)
146 3hfq_A Uncharacterized protein 99.5 8.6E-13 3E-17 133.4 24.9 238 258-523 45-316 (347)
147 2z3z_A Dipeptidyl aminopeptida 99.5 1.3E-13 4.5E-18 153.4 19.7 229 273-538 100-405 (706)
148 1xfd_A DIP, dipeptidyl aminope 99.5 2.6E-14 8.8E-19 159.4 13.5 235 267-525 31-346 (723)
149 2ecf_A Dipeptidyl peptidase IV 99.5 1.1E-13 3.6E-18 154.9 16.7 235 257-531 113-422 (741)
150 1jof_A Carboxy-CIS,CIS-muconat 99.5 8.6E-12 2.9E-16 127.6 25.3 246 258-528 45-345 (365)
151 1q7f_A NHL, brain tumor CG1071 99.5 1.4E-11 4.8E-16 121.0 25.1 232 260-523 37-279 (286)
152 1k32_A Tricorn protease; prote 99.5 1.6E-12 5.3E-17 151.6 20.9 229 257-530 208-467 (1045)
153 1xfd_A DIP, dipeptidyl aminope 99.4 3.1E-12 1E-16 142.5 20.8 235 259-523 67-392 (723)
154 3hfq_A Uncharacterized protein 99.4 5.9E-12 2E-16 127.2 20.9 205 301-523 43-270 (347)
155 1z68_A Fibroblast activation p 99.4 9.2E-14 3.1E-18 155.1 7.8 249 263-530 26-352 (719)
156 2z3z_A Dipeptidyl aminopeptida 99.4 1.2E-11 4.2E-16 137.4 24.2 167 338-533 259-444 (706)
157 3azo_A Aminopeptidase; POP fam 99.4 1.1E-11 3.9E-16 136.6 23.7 251 258-537 29-339 (662)
158 1k32_A Tricorn protease; prote 99.4 3.8E-12 1.3E-16 148.4 20.6 185 255-478 298-498 (1045)
159 3vgz_A Uncharacterized protein 99.4 1.8E-11 6.3E-16 123.1 23.0 172 339-531 91-270 (353)
160 3o4h_A Acylamino-acid-releasin 99.4 2.1E-12 7.2E-17 140.5 15.1 145 340-524 153-315 (582)
161 1pby_B Quinohemoprotein amine 99.4 1.3E-11 4.5E-16 123.0 19.7 171 339-538 36-284 (337)
162 1jmx_B Amine dehydrogenase; ox 99.4 1.5E-11 5.2E-16 123.3 18.9 169 339-538 45-299 (349)
163 3scy_A Hypothetical bacterial 99.3 1.3E-10 4.6E-15 117.9 23.6 239 270-523 23-290 (361)
164 4a5s_A Dipeptidyl peptidase 4 99.3 4.8E-11 1.7E-15 133.8 20.4 247 260-531 24-360 (740)
165 3fvz_A Peptidyl-glycine alpha- 99.3 1.9E-10 6.5E-15 115.9 21.5 225 274-525 69-323 (329)
166 3fvz_A Peptidyl-glycine alpha- 99.3 6.5E-10 2.2E-14 111.9 23.1 164 339-531 26-235 (329)
167 1jof_A Carboxy-CIS,CIS-muconat 99.2 1E-09 3.5E-14 112.0 22.4 162 341-527 87-296 (365)
168 3e5z_A Putative gluconolactona 99.2 1.3E-09 4.3E-14 107.6 21.9 171 339-539 71-261 (296)
169 1z68_A Fibroblast activation p 99.2 6.5E-11 2.2E-15 131.9 12.3 233 257-523 64-390 (719)
170 1q7f_A NHL, brain tumor CG1071 99.2 4.7E-09 1.6E-13 102.7 22.9 161 339-531 79-245 (286)
171 4a5s_A Dipeptidyl peptidase 4 99.1 8E-10 2.7E-14 123.9 17.5 142 340-512 20-188 (740)
172 3no2_A Uncharacterized protein 99.1 7.5E-09 2.6E-13 101.8 22.1 190 263-531 4-203 (276)
173 1rwi_B Serine/threonine-protei 99.1 9.7E-09 3.3E-13 99.3 21.9 224 264-524 35-264 (270)
174 3no2_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 103.8 18.1 150 351-533 7-164 (276)
175 2gop_A Trilobed protease; beta 99.1 3.7E-09 1.3E-13 106.3 18.2 216 272-539 41-307 (347)
176 3pe7_A Oligogalacturonate lyas 99.1 9.8E-09 3.4E-13 104.7 21.5 152 342-525 86-274 (388)
177 3azo_A Aminopeptidase; POP fam 99.1 3.9E-09 1.3E-13 116.3 19.6 159 339-530 190-375 (662)
178 2bkl_A Prolyl endopeptidase; m 99.0 3.1E-08 1E-12 110.2 25.4 233 256-524 124-397 (695)
179 3e5z_A Putative gluconolactona 99.0 1.8E-08 6E-13 99.3 20.6 154 340-530 118-292 (296)
180 3pe7_A Oligogalacturonate lyas 99.0 4.2E-09 1.4E-13 107.5 15.6 156 342-530 41-231 (388)
181 2xdw_A Prolyl endopeptidase; a 99.0 8.2E-08 2.8E-12 107.0 26.4 233 257-525 129-416 (710)
182 3dsm_A Uncharacterized protein 99.0 1.1E-08 3.9E-13 102.9 17.0 226 264-531 54-309 (328)
183 2dg1_A DRP35, lactonase; beta 98.9 1.2E-07 4.2E-12 94.6 23.5 225 259-511 51-296 (333)
184 2dg1_A DRP35, lactonase; beta 98.9 5.1E-08 1.7E-12 97.4 20.6 156 339-527 47-218 (333)
185 2oiz_A Aromatic amine dehydrog 98.9 4.4E-08 1.5E-12 100.0 19.5 173 341-530 54-343 (361)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 1.1E-07 3.8E-12 93.8 21.5 222 270-523 42-298 (314)
187 1xip_A Nucleoporin NUP159; bet 98.9 2.9E-08 1E-12 102.0 16.5 154 339-527 40-194 (388)
188 2xdw_A Prolyl endopeptidase; a 98.9 8.4E-08 2.9E-12 106.9 21.2 157 338-524 126-320 (710)
189 3c5m_A Oligogalacturonate lyas 98.9 4E-08 1.4E-12 100.1 16.5 164 342-524 86-273 (396)
190 3c5m_A Oligogalacturonate lyas 98.8 2.5E-08 8.4E-13 101.7 13.9 151 339-525 190-385 (396)
191 2gop_A Trilobed protease; beta 98.8 7.6E-08 2.6E-12 96.5 16.8 147 339-528 61-256 (347)
192 1xip_A Nucleoporin NUP159; bet 98.8 6.8E-08 2.3E-12 99.3 16.1 129 339-511 90-230 (388)
193 2z2n_A Virginiamycin B lyase; 98.8 2E-06 6.8E-11 83.7 26.1 227 262-526 24-257 (299)
194 1yr2_A Prolyl oligopeptidase; 98.8 3.9E-07 1.3E-11 102.0 23.5 237 257-529 167-446 (741)
195 2bkl_A Prolyl endopeptidase; m 98.8 7.4E-08 2.5E-12 107.0 16.8 157 337-524 121-304 (695)
196 2oiz_A Aromatic amine dehydrog 98.8 2.8E-07 9.6E-12 94.0 18.9 88 400-507 259-360 (361)
197 2z2n_A Virginiamycin B lyase; 98.8 2.2E-06 7.7E-11 83.3 24.3 228 260-525 64-296 (299)
198 1qks_A Cytochrome CD1 nitrite 98.7 6.5E-06 2.2E-10 89.1 27.7 237 264-523 167-420 (567)
199 3hrp_A Uncharacterized protein 98.7 1.9E-06 6.4E-11 89.5 22.5 232 257-522 135-408 (409)
200 1rwi_B Serine/threonine-protei 98.7 3.6E-07 1.2E-11 88.1 15.7 157 339-529 69-227 (270)
201 3g4e_A Regucalcin; six bladed 98.7 2.8E-06 9.6E-11 83.7 22.3 214 263-511 24-258 (297)
202 1yr2_A Prolyl oligopeptidase; 98.7 1.1E-06 3.6E-11 98.5 20.9 156 338-524 164-350 (741)
203 3iuj_A Prolyl endopeptidase; h 98.6 2.9E-06 9.9E-11 94.2 23.3 233 259-528 135-409 (693)
204 2qc5_A Streptogramin B lactona 98.6 1.6E-05 5.3E-10 77.3 25.2 227 263-527 30-263 (300)
205 3g4e_A Regucalcin; six bladed 98.6 3.7E-06 1.3E-10 82.9 20.4 171 339-540 56-247 (297)
206 3dsm_A Uncharacterized protein 98.6 2.3E-06 8E-11 85.8 18.7 156 339-524 86-253 (328)
207 1qks_A Cytochrome CD1 nitrite 98.6 3.9E-06 1.3E-10 90.8 21.1 151 350-530 168-380 (567)
208 2ghs_A AGR_C_1268P; regucalcin 98.5 1.4E-05 4.8E-10 80.0 23.2 213 264-511 61-288 (326)
209 2qc5_A Streptogramin B lactona 98.5 3.6E-05 1.2E-09 74.6 23.5 224 261-523 70-299 (300)
210 3hrp_A Uncharacterized protein 98.4 1.3E-05 4.5E-10 83.1 21.0 157 339-529 133-303 (409)
211 3dr2_A Exported gluconolactona 98.4 1.4E-05 4.9E-10 78.9 20.4 166 339-538 88-281 (305)
212 2mad_H Methylamine dehydrogena 98.4 0.00016 5.6E-09 73.8 27.4 231 272-529 95-356 (373)
213 2ghs_A AGR_C_1268P; regucalcin 98.4 4.1E-05 1.4E-09 76.5 22.1 169 339-539 92-276 (326)
214 2qe8_A Uncharacterized protein 98.3 1.3E-05 4.6E-10 80.6 16.7 174 338-528 68-283 (343)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 9.5E-05 3.2E-09 72.4 21.4 117 339-480 174-297 (314)
216 3dr2_A Exported gluconolactona 98.2 3.6E-05 1.2E-09 76.0 17.2 152 340-525 48-225 (305)
217 2qe8_A Uncharacterized protein 98.2 5.5E-05 1.9E-09 76.1 18.0 167 340-513 123-309 (343)
218 2hz6_A Endoplasmic reticulum t 98.1 2.2E-07 7.5E-12 95.2 -0.7 152 346-536 47-205 (369)
219 1npe_A Nidogen, entactin; glyc 98.1 0.00067 2.3E-08 65.2 23.7 158 339-528 38-202 (267)
220 3iuj_A Prolyl endopeptidase; h 98.1 0.0001 3.6E-09 81.6 19.4 156 338-524 130-314 (693)
221 3sjl_D Methylamine dehydrogena 98.0 9.3E-05 3.2E-09 75.7 15.8 237 272-534 107-374 (386)
222 3c75_H MADH, methylamine dehyd 98.0 0.00011 3.8E-09 76.2 15.9 180 341-530 181-409 (426)
223 2mad_H Methylamine dehydrogena 98.0 0.00042 1.4E-08 70.7 20.0 145 345-527 29-199 (373)
224 3sjl_D Methylamine dehydrogena 98.0 0.00017 5.9E-09 73.7 16.8 116 344-491 40-179 (386)
225 2hz6_A Endoplasmic reticulum t 97.9 1.8E-06 6.1E-11 88.3 -0.4 143 347-529 8-155 (369)
226 1mda_H Methylamine dehydrogena 97.8 0.00021 7.1E-09 72.8 14.6 73 457-532 269-355 (368)
227 2ece_A 462AA long hypothetical 97.8 0.0021 7E-08 66.6 20.9 163 340-532 141-364 (462)
228 3hxj_A Pyrrolo-quinoline quino 97.8 0.0004 1.4E-08 68.4 15.2 149 343-531 143-291 (330)
229 1npe_A Nidogen, entactin; glyc 97.7 0.0073 2.5E-07 57.8 22.5 159 339-531 81-246 (267)
230 2iwa_A Glutamine cyclotransfer 97.6 0.0025 8.4E-08 61.7 17.6 158 340-531 24-189 (266)
231 2iwa_A Glutamine cyclotransfer 97.6 0.0027 9.2E-08 61.4 17.8 144 347-523 74-236 (266)
232 3nol_A Glutamine cyclotransfer 97.6 0.0023 7.7E-08 61.5 16.4 156 340-532 46-210 (262)
233 3hxj_A Pyrrolo-quinoline quino 97.6 0.0016 5.5E-08 63.9 15.9 145 347-531 107-251 (330)
234 1ijq_A LDL receptor, low-densi 97.5 0.014 4.9E-07 57.6 22.5 163 339-530 32-201 (316)
235 3c75_H MADH, methylamine dehyd 97.5 0.0017 6E-08 67.2 15.8 114 346-491 82-219 (426)
236 3v64_C Agrin; beta propeller, 97.5 0.011 3.9E-07 59.3 21.3 159 339-527 75-237 (349)
237 3nol_A Glutamine cyclotransfer 97.5 0.0075 2.6E-07 57.8 18.6 142 346-521 94-251 (262)
238 2ece_A 462AA long hypothetical 97.4 0.0042 1.4E-07 64.3 16.9 154 346-523 93-288 (462)
239 1yiq_A Quinohemoprotein alcoho 97.4 0.0076 2.6E-07 66.6 20.4 178 341-533 239-515 (689)
240 1kb0_A Quinohemoprotein alcoho 97.4 0.0069 2.3E-07 66.8 19.2 178 341-533 247-517 (677)
241 3nok_A Glutaminyl cyclase; bet 97.3 0.028 9.6E-07 53.9 20.6 133 345-511 102-251 (268)
242 3nok_A Glutaminyl cyclase; bet 97.3 0.0064 2.2E-07 58.4 16.1 149 348-531 64-218 (268)
243 3v65_B Low-density lipoprotein 97.3 0.018 6.3E-07 58.7 20.6 159 339-527 118-280 (386)
244 1fwx_A Nitrous oxide reductase 97.3 0.0028 9.7E-08 67.8 14.6 145 346-523 99-307 (595)
245 2fp8_A Strictosidine synthase; 97.2 0.0077 2.6E-07 59.4 16.2 166 341-524 23-216 (322)
246 2fp8_A Strictosidine synthase; 97.2 0.025 8.4E-07 55.7 19.8 155 339-525 128-314 (322)
247 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.02 6.7E-07 57.6 19.1 132 352-521 242-375 (376)
248 1fwx_A Nitrous oxide reductase 97.2 0.0021 7.2E-08 68.7 11.9 128 396-528 278-435 (595)
249 2xe4_A Oligopeptidase B; hydro 97.1 0.0067 2.3E-07 67.7 16.4 153 339-523 176-353 (751)
250 3tc9_A Hypothetical hydrolase; 97.1 0.015 5E-07 60.4 17.9 153 339-524 139-301 (430)
251 3p5b_L Low density lipoprotein 97.1 0.063 2.1E-06 55.0 22.5 162 339-530 114-283 (400)
252 3qqz_A Putative uncharacterize 97.1 0.055 1.9E-06 51.8 20.2 167 339-532 29-212 (255)
253 1kb0_A Quinohemoprotein alcoho 97.1 0.0077 2.6E-07 66.4 16.2 150 345-511 321-536 (677)
254 1mda_H Methylamine dehydrogena 97.1 0.0031 1E-07 64.1 11.6 108 349-490 32-164 (368)
255 3mbr_X Glutamine cyclotransfer 97.0 0.05 1.7E-06 51.6 18.9 156 340-531 24-187 (243)
256 3sov_A LRP-6, low-density lipo 97.0 0.062 2.1E-06 53.2 20.6 160 339-528 37-201 (318)
257 2p9w_A MAL S 1 allergenic prot 97.0 0.023 8E-07 56.3 17.1 161 341-523 17-214 (334)
258 3mbr_X Glutamine cyclotransfer 97.0 0.13 4.3E-06 48.8 21.2 140 347-520 73-229 (243)
259 1yiq_A Quinohemoprotein alcoho 97.0 0.013 4.5E-07 64.6 16.5 79 420-511 455-534 (689)
260 4hw6_A Hypothetical protein, I 96.9 0.18 6.2E-06 52.1 24.1 159 340-523 231-432 (433)
261 2p4o_A Hypothetical protein; p 96.8 0.39 1.3E-05 46.6 25.1 164 339-528 74-246 (306)
262 1ijq_A LDL receptor, low-densi 96.7 0.29 1E-05 48.0 22.6 159 340-530 80-245 (316)
263 3qqz_A Putative uncharacterize 96.7 0.19 6.5E-06 48.0 20.2 164 341-523 74-252 (255)
264 3v64_C Agrin; beta propeller, 96.6 0.14 4.9E-06 51.2 19.9 157 340-530 119-282 (349)
265 3sov_A LRP-6, low-density lipo 96.6 0.2 6.9E-06 49.4 20.7 157 340-530 82-245 (318)
266 3m0c_C LDL receptor, low-densi 96.6 0.18 6E-06 56.4 22.2 160 339-530 426-595 (791)
267 3q7m_A Lipoprotein YFGL, BAMB; 96.6 0.091 3.1E-06 52.6 18.3 154 352-531 56-215 (376)
268 3v65_B Low-density lipoprotein 96.5 0.14 4.7E-06 52.1 19.2 157 340-530 162-325 (386)
269 1kv9_A Type II quinohemoprotei 96.5 0.082 2.8E-06 58.0 18.2 59 472-533 437-498 (668)
270 2p4o_A Hypothetical protein; p 96.5 0.36 1.2E-05 46.9 21.2 152 339-524 34-198 (306)
271 4hw6_A Hypothetical protein, I 96.3 0.13 4.5E-06 53.2 17.7 152 339-523 141-303 (433)
272 3tc9_A Hypothetical hydrolase; 96.3 0.37 1.3E-05 49.6 21.0 159 339-523 228-429 (430)
273 4a0p_A LRP6, LRP-6, low-densit 96.2 0.49 1.7E-05 51.4 22.0 155 339-525 39-198 (628)
274 4a2l_A BT_4663, two-component 96.1 0.49 1.7E-05 52.7 22.4 160 339-527 359-529 (795)
275 3p5b_L Low density lipoprotein 96.0 0.93 3.2E-05 46.1 22.1 161 339-530 161-327 (400)
276 2xe4_A Oligopeptidase B; hydro 95.9 0.16 5.6E-06 56.4 17.0 152 340-522 224-398 (751)
277 3kya_A Putative phosphatase; s 95.7 0.22 7.6E-06 52.2 16.1 163 339-524 141-341 (496)
278 1n7d_A LDL receptor, low-densi 95.7 0.015 5.1E-07 64.3 7.4 158 340-528 409-575 (699)
279 4a2l_A BT_4663, two-component 95.7 1.1 3.6E-05 49.9 22.7 160 339-530 312-486 (795)
280 1k3i_A Galactose oxidase precu 95.5 1.7 5.7E-05 47.3 22.9 57 456-513 460-529 (656)
281 3s94_A LRP-6, low-density lipo 95.5 0.96 3.3E-05 49.0 20.7 159 339-528 42-206 (619)
282 2ad6_A Methanol dehydrogenase 95.4 0.15 5.1E-06 54.8 13.9 50 461-511 473-523 (571)
283 2ad6_A Methanol dehydrogenase 95.3 1.4 4.9E-05 47.0 21.3 60 472-534 443-505 (571)
284 3s94_A LRP-6, low-density lipo 95.2 1.6 5.5E-05 47.2 21.3 159 339-528 351-514 (619)
285 3kya_A Putative phosphatase; s 95.1 0.54 1.9E-05 49.3 16.6 166 339-529 249-480 (496)
286 3amr_A 3-phytase; beta-propell 95.1 1.5 5.2E-05 43.6 18.9 142 351-523 42-209 (355)
287 1n7d_A LDL receptor, low-densi 95.1 0.085 2.9E-06 58.2 10.8 160 340-531 456-622 (699)
288 3v9f_A Two-component system se 95.0 1.3 4.5E-05 49.0 20.7 161 339-530 409-574 (781)
289 3v9f_A Two-component system se 95.0 1 3.5E-05 50.0 19.8 161 339-531 365-531 (781)
290 3m0c_C LDL receptor, low-densi 95.0 1.6 5.4E-05 48.7 21.0 159 340-530 474-639 (791)
291 2xbg_A YCF48-like protein; pho 94.9 1.4 4.9E-05 43.2 18.5 152 339-522 165-320 (327)
292 1flg_A Protein (quinoprotein e 94.9 2.3 7.7E-05 45.6 21.4 61 472-535 465-528 (582)
293 4a0p_A LRP6, LRP-6, low-densit 94.9 2.2 7.6E-05 46.2 21.4 166 339-530 342-514 (628)
294 2xbg_A YCF48-like protein; pho 94.8 2.9 0.0001 40.9 20.5 150 340-523 125-277 (327)
295 1w6s_A Methanol dehydrogenase 94.3 3.7 0.00013 44.1 21.2 59 472-533 452-513 (599)
296 1flg_A Protein (quinoprotein e 94.1 0.68 2.3E-05 49.7 15.0 48 462-510 496-544 (582)
297 3sre_A PON1, serum paraoxonase 94.1 1.8 6.3E-05 43.2 17.1 145 357-523 81-251 (355)
298 1kv9_A Type II quinohemoprotei 93.8 1.1 3.6E-05 49.1 16.0 163 352-531 120-341 (668)
299 3pbp_A Nucleoporin NUP82; beta 93.6 3 0.0001 42.6 17.4 147 344-511 28-196 (452)
300 3sre_A PON1, serum paraoxonase 93.3 7.1 0.00024 38.9 20.8 147 347-523 124-297 (355)
301 3pbp_A Nucleoporin NUP82; beta 93.3 0.66 2.2E-05 47.4 12.0 128 342-476 71-206 (452)
302 1cru_A Protein (soluble quinop 92.4 3.5 0.00012 42.6 16.7 119 339-470 29-162 (454)
303 3ei3_A DNA damage-binding prot 92.2 8.7 0.0003 44.7 21.1 133 358-522 863-997 (1158)
304 3amr_A 3-phytase; beta-propell 92.1 10 0.00035 37.6 19.3 128 396-531 129-272 (355)
305 3a9g_A Putative uncharacterize 91.7 2.6 9E-05 41.9 14.2 147 339-511 31-214 (354)
306 1w6s_A Methanol dehydrogenase 91.7 2 7E-05 46.1 14.2 47 462-509 483-530 (599)
307 2ism_A Putative oxidoreductase 91.3 2.7 9.1E-05 41.8 13.8 108 339-470 33-153 (352)
308 1k3i_A Galactose oxidase precu 91.0 2.4 8.3E-05 45.9 14.2 112 341-481 190-322 (656)
309 3a9g_A Putative uncharacterize 90.9 4.9 0.00017 39.9 15.3 115 394-525 28-179 (354)
310 2ism_A Putative oxidoreductase 90.2 7.2 0.00025 38.6 15.8 115 394-524 30-178 (352)
311 3das_A Putative oxidoreductase 89.6 12 0.00041 37.1 16.7 155 339-511 34-218 (347)
312 2xzh_A Clathrin heavy chain 1; 89.0 19 0.00064 35.5 21.7 166 338-525 153-333 (365)
313 2p9w_A MAL S 1 allergenic prot 86.8 25 0.00086 34.5 21.6 166 339-524 65-265 (334)
314 2g8s_A Glucose/sorbosone dehyd 86.0 6.3 0.00021 39.0 12.2 56 339-404 20-75 (353)
315 1tl2_A L10, protein (tachylect 85.7 4.1 0.00014 37.8 9.5 147 340-517 44-203 (236)
316 3s25_A Hypothetical 7-bladed b 85.6 26 0.00091 33.7 16.4 127 342-511 58-200 (302)
317 3ei3_A DNA damage-binding prot 85.1 62 0.0021 37.5 25.6 74 339-429 556-636 (1158)
318 2g8s_A Glucose/sorbosone dehyd 85.0 10 0.00034 37.5 13.1 122 395-525 18-174 (353)
319 3das_A Putative oxidoreductase 84.9 30 0.001 34.1 16.4 106 392-511 29-156 (347)
320 1xi4_A Clathrin heavy chain; a 83.7 33 0.0011 40.5 17.8 227 273-527 85-334 (1630)
321 3s25_A Hypothetical 7-bladed b 83.2 22 0.00076 34.2 14.4 142 343-529 110-260 (302)
322 1cru_A Protein (soluble quinop 83.0 22 0.00075 36.5 15.1 104 394-511 26-160 (454)
323 1bpo_A Protein (clathrin); cla 81.9 49 0.0017 33.9 23.7 166 338-525 152-332 (494)
324 1tl2_A L10, protein (tachylect 79.2 6.3 0.00022 36.5 8.1 108 395-518 41-157 (236)
325 2be1_A Serine/threonine-protei 73.9 18 0.0006 35.7 10.4 24 505-528 212-236 (339)
326 3ott_A Two-component system se 72.5 1.1E+02 0.0038 33.1 19.9 150 339-527 65-223 (758)
327 3sbq_A Nitrous-oxide reductase 68.9 23 0.00078 37.5 10.1 120 340-470 326-453 (638)
328 2xn4_A Kelch-like protein 2; s 68.8 76 0.0026 29.6 13.9 106 409-526 155-278 (302)
329 4asc_A Kelch repeat and BTB do 68.3 81 0.0028 29.7 13.9 23 409-431 148-176 (315)
330 2vpj_A Kelch-like protein 12; 68.0 79 0.0027 29.5 16.6 146 347-525 112-279 (301)
331 3ii7_A Kelch-like protein 7; p 67.3 82 0.0028 29.4 15.1 65 347-431 55-129 (306)
332 2wg3_C Hedgehog-interacting pr 67.2 1E+02 0.0036 31.5 15.0 106 394-511 13-155 (463)
333 2vpj_A Kelch-like protein 12; 63.7 95 0.0032 28.9 16.9 105 409-526 112-233 (301)
334 2xzh_A Clathrin heavy chain 1; 62.6 1.2E+02 0.0042 29.8 19.6 117 343-493 73-200 (365)
335 3sbq_A Nitrous-oxide reductase 61.0 66 0.0023 34.0 11.8 126 396-528 324-482 (638)
336 3ii7_A Kelch-like protein 7; p 60.5 1.1E+02 0.0037 28.5 16.5 145 349-525 12-179 (306)
337 1bpo_A Protein (clathrin); cla 60.3 1.6E+02 0.0053 30.3 18.1 117 343-493 72-199 (494)
338 1zgk_A Kelch-like ECH-associat 53.2 1.5E+02 0.005 27.8 15.5 107 409-527 168-290 (308)
339 1xi4_A Clathrin heavy chain; a 52.5 64 0.0022 38.2 10.9 117 343-493 72-199 (1630)
340 4gq2_M Nucleoporin NUP120; bet 48.5 79 0.0027 35.8 11.0 32 396-431 237-268 (950)
341 2uvk_A YJHT; unknown function, 47.7 1.5E+02 0.0051 28.3 11.9 13 359-371 168-180 (357)
342 2xn4_A Kelch-like protein 2; s 46.3 1.8E+02 0.0062 26.9 16.1 24 347-371 61-89 (302)
343 1zgk_A Kelch-like ECH-associat 43.1 2.1E+02 0.0072 26.6 14.1 104 409-525 121-241 (308)
344 2woz_A Kelch repeat and BTB do 42.8 2.1E+02 0.0073 26.7 13.9 23 409-431 158-186 (318)
345 4fhn_B Nucleoporin NUP120; pro 40.7 51 0.0017 38.1 8.0 32 396-431 239-270 (1139)
346 3zwu_A Alkaline phosphatase PH 38.7 72 0.0024 33.9 8.1 77 453-530 477-587 (592)
347 2zwa_A Leucine carboxyl methyl 38.0 2E+02 0.0069 31.0 11.9 24 409-432 500-525 (695)
348 1t77_A Lipopolysaccharide-resp 35.7 9.1 0.00031 38.7 0.5 44 134-180 279-322 (414)
349 4gq2_M Nucleoporin NUP120; bet 35.5 1.9E+02 0.0064 32.6 11.4 37 453-489 237-274 (950)
350 3ott_A Two-component system se 35.2 4.5E+02 0.015 28.2 19.2 148 346-529 111-265 (758)
351 2zwa_A Leucine carboxyl methyl 34.7 4.5E+02 0.015 28.1 15.6 157 346-525 396-578 (695)
352 2wg3_C Hedgehog-interacting pr 31.4 4.3E+02 0.015 26.8 12.5 126 339-472 16-159 (463)
353 4a9v_A PHOX; hydrolase, beta-p 26.6 1.5E+02 0.005 31.4 7.8 60 452-512 476-548 (592)
354 2zux_A YESW protein; beta-prop 25.9 6E+02 0.02 26.7 14.0 43 449-491 361-410 (591)
355 3qhy_B Beta-lactamase inhibito 25.1 3.6E+02 0.012 25.1 9.9 63 395-478 63-125 (282)
356 3q6k_A 43.2 kDa salivary prote 22.7 5.6E+02 0.019 25.2 18.4 154 348-512 170-341 (381)
357 2be1_A Serine/threonine-protei 22.5 90 0.0031 30.5 5.1 27 505-531 111-138 (339)
358 3f7f_A Nucleoporin NUP120; nuc 21.9 1E+02 0.0036 33.4 5.8 30 396-431 223-252 (729)
359 4fhn_B Nucleoporin NUP120; pro 20.2 68 0.0023 37.1 4.2 34 341-375 242-275 (1139)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=100.00 E-value=2.8e-69 Score=544.46 Aligned_cols=218 Identities=38% Similarity=0.620 Sum_probs=189.1
Q ss_pred cccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHh
Q psy1242 2 TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYN 81 (540)
Q Consensus 2 ~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~ 81 (540)
++|++|++|+||||||||.||.+|||||||++|||||||||+||+|++|||+|+++||||+|||||||++|++.+++||+
T Consensus 135 ~~t~~W~~g~iSNFeYLm~LN~~aGRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~ 214 (414)
T 1t77_A 135 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYE 214 (414)
T ss_dssp SHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCccHHHHHHHHHHHcCCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC--------------------
Q psy1242 82 SWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE-------------------- 128 (540)
Q Consensus 82 ~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~-------------------- 128 (540)
+++++.+++||||+|||++++|++||+|+| | |+|| ||| +||+++|++
T Consensus 215 ~~~~~~~~~f~ygshyS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~Pe 294 (414)
T 1t77_A 215 SWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPE 294 (414)
T ss_dssp HCCCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTCGG
T ss_pred hhcccCCCCcccCCCCCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcChH
Confidence 999888999999999999999999999999 7 8999 999 999999975
Q ss_pred -------------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCCCccc---cCCCCCCCCCC-cchhhhhhhhcc
Q psy1242 129 -------------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK---LRVRPITTPLY-PRDIWVTISVRS 191 (540)
Q Consensus 129 -------------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~fg~~---~~~~~~~~~~~-~~~a~~~~~i~~ 191 (540)
++|+.++| |+|||||++|++|| ++||+||||++-.+ .+||.|++.++ +++| +++ .|
T Consensus 295 ~l~N~n~~~lG~~~~g~~v~D--V~LP~Wa~sp~~FI--~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~A-v~a--~N 367 (414)
T 1t77_A 295 MFVNFNNYNLGVMDDGTVVSD--VELPPWAKTSEEFV--HINRLALESEFVSCQLHQWIDLIFGYKQQGPEA-VRA--LN 367 (414)
T ss_dssp GGSCTTCCCCCBCTTSCBCSS--CBCCTTCSSHHHHH--HHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHH-HHH--TC
T ss_pred hhccccCCccccccCCCCCCc--eeCCCCCCCHHHHH--HHHHHHHcChHhhhhhhhhhhhhcCcccCCHHH-Hhc--CC
Confidence 56788999 99999999999999 99999999983111 23334555444 3444 433 36
Q ss_pred cccchh---hhhhhhhhccc-------cccccccccCcc-cccccC
Q psy1242 192 YAYDIT---VLSLRWIVDSC-------WRAVSGITASEC-SLRIMS 226 (540)
Q Consensus 192 ~~y~~~---~~~l~~~~~~~-------~~~~fGQ~P~Q~-~~~~~~ 226 (540)
++|+++ ++|++.|.|+. ++++|||||.|| .+||+.
T Consensus 368 vf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~fGQ~P~QLF~~pHP~ 413 (414)
T 1t77_A 368 VFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPP 413 (414)
T ss_dssp CBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCC
T ss_pred ccccceecCcccccccCCHHHHHHHHHHHHHcCCChhhhhcCCCCC
Confidence 666554 67888777754 448899999998 466654
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=8.9e-29 Score=259.03 Aligned_cols=244 Identities=14% Similarity=0.167 Sum_probs=196.5
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----Cc
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----SQ 333 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~----~~ 333 (540)
.+.++...++|++.|++|++||..++.... ..+|.+.|. .+.|++++.++++|+.+... ..+.+.... -.
T Consensus 115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~----~v~~~~~~~~l~sgs~D~~i-~iwd~~~~~~~~~~~ 189 (410)
T 1vyh_C 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ----DISFDHSGKLLASCSADMTI-KLWDFQGFECIRTMH 189 (410)
T ss_dssp EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE----EEEECTTSSEEEEEETTSCC-CEEETTSSCEEECCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE----EEEEcCCCCEEEEEeCCCeE-EEEeCCCCceeEEEc
Confidence 333344459999999999999998766443 345665443 57788999888877655443 222221100 01
Q ss_pred ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.....+.+++|+|+++. |++|+.|++|++||+++++++..+ .+|...|.+++++| +|.+|
T Consensus 190 ~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~g~~l 249 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF---------------TGHREWVRMVRPNQ----DGTLI 249 (410)
T ss_dssp CCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECT----TSSEE
T ss_pred CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEE---------------eCCCccEEEEEECC----CCCEE
Confidence 11223788899999995 799999999999999999998888 88999999999999 99999
Q ss_pred EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--------------------CCEEEEEeCCC
Q psy1242 414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--------------------LGLVVSGSQLG 473 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--------------------g~~lasgs~Dg 473 (540)
++|+.|++|++||+.. .++...+.+|...|.+++|+|+ +.+|++|+.||
T Consensus 250 ~s~s~D~~v~vwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVAT-----------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEcCCCeEEEEECCC-----------CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 9999999999999876 4577889999999999999996 67899999999
Q ss_pred cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 474 PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
+|++|+. +++++.++.+|.. .|.+++|+|+|++|++ +.|+.|++||+. ++.+..+. |.+.|++++
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred eEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 9999986 7899999999988 7899999999999988 568999999987 67777775 888888764
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=249.06 Aligned_cols=232 Identities=15% Similarity=0.146 Sum_probs=185.5
Q ss_pred cccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242 253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF 331 (540)
Q Consensus 253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~ 331 (540)
.++..+.+.++...++|++.|++|++||..++...... .+.. ....+.|++|+..+++|+.+... ..+.+....
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~g~~dg~v-~i~~~~~~~ 155 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV----DAWTLAFSPDSQYLATGTHVGKV-NIFGVESGK 155 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT----CCCCEEECTTSSEEEEECTTSEE-EEEETTTCS
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCcE-EEEEcCCCc
Confidence 33444555566667999999999999999876543322 2322 23357899999888877543322 112221110
Q ss_pred C----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 332 S----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 332 ~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
. ....-.+.+++|+|+|++ |++|+.||.|++||+++++.+..+ .+|...|++++|+|
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~---------------~~h~~~v~~l~~sp--- 216 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTL---------------EGHAMPIRSLTFSP--- 216 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCCCEEEECT---
T ss_pred eeEEecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEE---------------cccCCceeEEEEcC---
Confidence 0 001113678899999995 799999999999999999998888 88999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242 408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR 486 (540)
Q Consensus 408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~ 486 (540)
++++|++|+.|++|++||++. ..+...+.+|...|.+++|+|++.+|++|+.||+|++|+. +++++.
T Consensus 217 -d~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 217 -DSQLLVTASDDGYIKIYDVQH-----------ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp -TSCEEEEECTTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCC-----------cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 999999999999999999876 4567889999999999999999999999999999999976 789999
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM 522 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~ 522 (540)
++.+|.. .|.+++|+|+|+.|++ +.|+.|++||.
T Consensus 285 ~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 TFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EECCCSS--CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999988 7899999999999888 57899999995
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2.6e-28 Score=244.70 Aligned_cols=254 Identities=15% Similarity=0.126 Sum_probs=193.0
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCe
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPIL 311 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l 311 (540)
.+.+.+..+.|+|+++. ++|++.|++|++||..++...... .|... ...+.|++|+.+
T Consensus 11 ~h~~~V~~~~fsp~~~~-----------------l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~ 69 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPW-----------------VLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNW 69 (304)
T ss_dssp EECSCEEEEEECSSSSE-----------------EEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTE
T ss_pred CCCCceEEEEECCCCCE-----------------EEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCE
Confidence 34556666777776665 999999999999999876543322 34432 235678888888
Q ss_pred eeccCCCCCCccccccCCCc-C---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeee
Q psy1242 312 THPTSNNNAPVPKRHLGDNF-S---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRI 386 (540)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~-~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~ 386 (540)
+++|+.+... ..+.+.... . ....-.+.+++|+|+++. |++|+.|++|++||++++. ....+
T Consensus 70 l~s~s~d~~i-~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~----------- 136 (304)
T 2ynn_A 70 IIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTF----------- 136 (304)
T ss_dssp EEEEETTSEE-EEEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEE-----------
T ss_pred EEEECCCCEE-EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhhhh-----------
Confidence 8777544332 222221110 0 011123788899999995 7999999999999998874 44555
Q ss_pred EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcC--CC
Q psy1242 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISA--EL 463 (540)
Q Consensus 387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~sp--dg 463 (540)
.+|...|++++|+|. ++..|++|+.|++|++||++.. .+...+ .+|...+.+++++| ++
T Consensus 137 ----~~h~~~v~~v~~~p~---~~~~l~sgs~D~~v~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 137 ----EGHEHFVMCVAFNPK---DPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDK 198 (304)
T ss_dssp ----CCCCSCEEEEEECTT---CTTEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCEEEEEECCSTTC
T ss_pred ----cccCCcEEEEEECCC---CCCEEEEEeCCCeEEEEECCCC-----------CccceeccCCcCcEEEEEEEEcCCC
Confidence 789999999999983 5789999999999999998753 233333 56778899999987 67
Q ss_pred CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242 464 GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT 539 (540)
Q Consensus 464 ~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v 539 (540)
.+|++|+.||+|++|+. +++++.++.+|.. .|.+++|+|++.+|+++ .||+|++||++ ++.+..+. +.+.+.|+
T Consensus 199 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 89999999999999976 7889999999988 78999999999999984 68999999987 78887776 66777765
Q ss_pred C
Q psy1242 540 A 540 (540)
Q Consensus 540 a 540 (540)
+
T Consensus 277 ~ 277 (304)
T 2ynn_A 277 A 277 (304)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=7.2e-29 Score=251.16 Aligned_cols=257 Identities=15% Similarity=0.148 Sum_probs=198.3
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCC
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDP 309 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~ 309 (540)
.|++.+..+.+.++.+. +...++|+|.|++|++|+....... ...+|...|. .+.+++++
T Consensus 30 ~H~~~V~~v~~~~~~~~-------------~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~----~~~~~~~~ 92 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKE-------------NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV----SVDISHTL 92 (321)
T ss_dssp SSSSCEEEEEEC--------------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE----EEEECSSS
T ss_pred cCCCcEEEEEEecCCCC-------------CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE----EEEECCCC
Confidence 45667777777654321 2345999999999999998654321 2345654443 46678888
Q ss_pred CeeeccCCCCCCccccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeee
Q psy1242 310 ILTHPTSNNNAPVPKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSR 385 (540)
Q Consensus 310 ~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~ 385 (540)
.++++++.+... ..+.+..... ......+.+++|+|+++. |++|+.|+.|++|++++++....+
T Consensus 93 ~~l~s~s~D~~i-~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~---------- 160 (321)
T 3ow8_A 93 PIAASSSLDAHI-RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSL---------- 160 (321)
T ss_dssp SEEEEEETTSEE-EEEETTTTEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEE----------
T ss_pred CEEEEEeCCCcE-EEEECCCCCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEe----------
Confidence 777776543332 2222221100 001112557888999995 799999999999999999888777
Q ss_pred eEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242 386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL 465 (540)
Q Consensus 386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~ 465 (540)
..|...|.+++|+| +|++|++|+.|++|++||+++ ++++..+.+|...|.+++|+|++++
T Consensus 161 -----~~~~~~v~~~~~sp----dg~~lasg~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 161 -----DTRGKFILSIAYSP----DGKYLASGAIDGIINIFDIAT-----------GKLLHTLEGHAMPIRSLTFSPDSQL 220 (321)
T ss_dssp -----ECSSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCCCEEEECTTSCE
T ss_pred -----cCCCceEEEEEECC----CCCEEEEEcCCCeEEEEECCC-----------CcEEEEEcccCCceeEEEEcCCCCE
Confidence 78889999999999 999999999999999999876 4678889999999999999999999
Q ss_pred EEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 466 VVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 466 lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
|++|+.||+|++|+. +++++..+.+|.. .|.+++|+|+|.+|++ +.|++|++||+. ++.+..+. |.+.|.+++
T Consensus 221 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 221 LVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 999999999999976 7888999999988 7899999999999998 568999999997 77777764 888888764
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=6.1e-28 Score=245.90 Aligned_cols=245 Identities=14% Similarity=0.151 Sum_probs=189.7
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-----
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----- 332 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----- 332 (540)
.+.+++..++|+|.|++|++||..++..... ..|...+ ..+.+++|+.++++|+.+... ..+.+.....
T Consensus 62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~~d~~v-~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV----MTCAYAPSGNYVACGGLDNIC-SIYNLKTREGNVRVS 136 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCE----EEEEECTTSSEEEEEETTCEE-EEEETTTCSBSCEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccE----EEEEECCCCCEEEEEeCCCeE-EEEECccCCCcceeE
Confidence 3344444599999999999999876654332 2344322 356789999888877544322 2222211100
Q ss_pred ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242 333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA 409 (540)
Q Consensus 333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d 409 (540)
......+.|+.|++++. +++|+.|++|++||+++++.+..+ .+|.+.|++++|+| +
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~ 195 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF---------------TGHTGDVMSLSLAP----D 195 (340)
T ss_dssp EEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECT----T
T ss_pred EEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE---------------cCCCCceEEEEECC----C
Confidence 00112367888888886 588899999999999999988888 88999999999999 9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l 488 (540)
+.+|++|+.|++|++||++. +.++..+.+|...|++++|+|++.+|++|+.||+|++|+. +++.+..+
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVRE-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp SSEEEEEETTSCEEEEETTT-----------CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCC-----------CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999999999999999876 4578889999999999999999999999999999999986 66777777
Q ss_pred cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
..+.....|.+++|+|+|++|++| .|+.|++||+. ++.+..+. |.+.|.||+
T Consensus 265 ~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 644322268999999999999985 68999999986 77777775 899998874
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.2e-27 Score=245.58 Aligned_cols=256 Identities=13% Similarity=0.089 Sum_probs=195.4
Q ss_pred ccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCee
Q psy1242 234 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILT 312 (540)
Q Consensus 234 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~ 312 (540)
|...+..+.|++++.. ++|+|.|++|++||..+....... .|.. ....+.+++|+..+
T Consensus 63 H~~~V~~~~~s~d~~~-----------------l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRR-----------------IVSSSQDGKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSE-----------------EEEEETTSEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCE-----------------EEEEeCCCeEEEEECCCCCcceEEecCCC----CEEEEEECCCCCEE
Confidence 4455555666555544 999999999999998765533222 2332 23457899999888
Q ss_pred eccCCCCCCccccccCCC-----cCc-----ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccccee
Q psy1242 313 HPTSNNNAPVPKRHLGDN-----FSQ-----KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVV 382 (540)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~-----~~~-----~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v 382 (540)
++|+.+... ..+.+... ... ...-.+.+++|+|++.. |++|+.|++|++||+++++.+..+
T Consensus 122 asg~~d~~i-~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~------- 192 (354)
T 2pbi_B 122 ACGGLDNKC-SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSF------- 192 (354)
T ss_dssp EEESTTSEE-EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred EEeeCCCCE-EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEE-------
Confidence 877544322 11111100 000 01123678889999996 789999999999999999998888
Q ss_pred eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE 462 (540)
Q Consensus 383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 462 (540)
.+|...|.+++++|. .+|.+|++|+.|++|++||+++ ++++..+.+|...|++++|+|+
T Consensus 193 --------~~h~~~v~~~~~~~~--~~g~~l~sgs~Dg~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 193 --------HGHGADVLCLDLAPS--ETGNTFVSGGCDKKAMVWDMRS-----------GQCVQAFETHESDVNSVRYYPS 251 (354)
T ss_dssp --------ECCSSCEEEEEECCC--SSCCEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTT
T ss_pred --------cCCCCCeEEEEEEeC--CCCCEEEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCeEEEEEeCC
Confidence 889999999999872 1468999999999999999876 4678889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCccee
Q psy1242 463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQK 538 (540)
Q Consensus 463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~ 538 (540)
+.+|++|+.|++|++|+. +++.+..+..+.....+.+++|+|+|++|+++ .|+.|++||+. |+.+..+. |.+.|++
T Consensus 252 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 331 (354)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence 999999999999999987 56666666654433367899999999999985 68999999985 88887775 8899988
Q ss_pred cC
Q psy1242 539 TA 540 (540)
Q Consensus 539 va 540 (540)
++
T Consensus 332 l~ 333 (354)
T 2pbi_B 332 LR 333 (354)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=247.94 Aligned_cols=250 Identities=16% Similarity=0.154 Sum_probs=177.9
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCC--------cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH 326 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--------~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~ 326 (540)
+..+.+.+++..++++| |.++|+||..... .................+.|++|+.+++++. +.....+.
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~--dg~v~lWd 109 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASD--SGAVELWE 109 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEET--TSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEEC--CCEEEEEe
Confidence 34444555555588877 7788888732100 0000000000012234678899987775542 22333333
Q ss_pred cCCCcC--------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242 327 LGDNFS--------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398 (540)
Q Consensus 327 ~~~~~~--------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt 398 (540)
+..... ....-.+.+++|+|+|++ |++|+.|++|++||+++++++..+ .+|.+.|+
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~~~~---------------~~h~~~V~ 173 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVLSSY---------------RAHAAQVT 173 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEE
T ss_pred ccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEE---------------cCcCCceE
Confidence 322110 011223788999999995 799999999999999999999888 89999999
Q ss_pred EEEeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCC-CCEEEEEeCCCc
Q psy1242 399 CLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAE-LGLVVSGSQLGP 474 (540)
Q Consensus 399 ~l~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spd-g~~lasgs~Dg~ 474 (540)
+++|+| ++ ..|++|+.|++|++||++. +++...+ ..|...+.+++|+|+ +.++++|+.||+
T Consensus 174 ~~~~~~----~~~~~l~s~s~D~~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 174 CVAASP----HKDSVFLSCSEDNRILLWDTRC-----------PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EEEECS----SCTTEEEEEETTSCEEEEETTS-----------SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred EEEecC----CCCCceeeeccccccccccccc-----------cceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999 66 5789999999999999876 3445555 345668999999995 568899999999
Q ss_pred EEEEeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEE-ecCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242 475 VLVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKTA 540 (540)
Q Consensus 475 v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~va 540 (540)
|++|+. +++++.++.+|.. .|.+++|+|+| ++|++ +.|++|++||++ ++++....|.+.|++|+
T Consensus 239 v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~ 306 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 306 (344)
T ss_dssp EEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEE
Confidence 999976 7889999999998 78999999998 57777 568999999998 55555556999998874
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=245.05 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=171.9
Q ss_pred EEEccCcceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCccee
Q psy1242 267 TVTANHQFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQKLR 336 (540)
Q Consensus 267 lvs~s~D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~~~~ 336 (540)
+++++.|++|++||..+++.... .+|.+.|. .+.|++|+.++++|+.+... ..+.+... +. ...
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~----~v~~spdg~~l~sgs~d~~i-~iwd~~~~~~~~~~~-~h~ 169 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS----TVSVLSSGTQAVSGSKDICI-KVWDLAQQVVLSSYR-AHA 169 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE----EEEECTTSSEEEEEETTSCE-EEEETTTTEEEEEEC-CCS
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE----EEEECCCCCEEEEEeCCCeE-EEEECCCCcEEEEEc-CcC
Confidence 67899999999999987664322 25664443 57899999888887654433 22222211 11 112
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
-.+.+++|++++..++++|+.|++|++||+++++....+.. ..|...+++++|+|. ++++|++|
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~p~---~~~~l~sg 233 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------SAPGYLPTSLAWHPQ---QSEVFVFG 233 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------------CCCEEEEEECSS---CTTEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec-------------ceeeccceeeeecCC---CCcceEEe
Confidence 23788899999977789999999999999999988876621 346677999999994 56789999
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcEEEEecCCCCCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFA 495 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~ 495 (540)
+.|++|+|||++. ++++..+.+|...|++++|+|++ ++|++|+.||+|+||+.....+..+.+|.+
T Consensus 234 ~~dg~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-- 300 (344)
T 4gqb_B 234 DENGTVSLVDTKS-----------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-- 300 (344)
T ss_dssp ETTSEEEEEESCC-------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS--
T ss_pred ccCCcEEEEECCC-----------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC--
Confidence 9999999999876 46788999999999999999998 589999999999999875444556788988
Q ss_pred CceEEEEeeCCC-EEEE-ecCCeEEEEecCCcEE
Q psy1242 496 SPESVVMSREGV-IVVN-YERGHIAAFTMNGNRL 527 (540)
Q Consensus 496 ~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g~~l 527 (540)
.|.+++|+|+|+ +|++ |.|++|++|++..+.+
T Consensus 301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 789999999987 5556 5699999999886544
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4e-27 Score=259.22 Aligned_cols=248 Identities=14% Similarity=0.139 Sum_probs=185.5
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCCeeeccCCCCC---CccccccC
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA---PVPKRHLG 328 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~---~~~~~~~~ 328 (540)
++.+.+.+++..+||++.|++|++||...+... ...+|.+.| ..+.|++|+..+++++.... ....+..+
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v----~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~ 137 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV----KDISWDSESKRIAAVGEGRERFGHVFLFDTG 137 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE----EEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce----EEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence 344445555556999999999999998643321 223455433 36789999987765543221 11112111
Q ss_pred C---CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242 329 D---NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC 405 (540)
Q Consensus 329 ~---~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~ 405 (540)
. .+. ...-.+.+++|+|++..+|++|+.|++|++||..+++....+ .+|.+.|++++|+|
T Consensus 138 ~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l---------------~~H~~~V~~v~fsp- 200 (611)
T 1nr0_A 138 TSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---------------GEHTKFVHSVRYNP- 200 (611)
T ss_dssp CBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---------------CCCSSCEEEEEECT-
T ss_pred CCcceec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee---------------ccccCceEEEEECC-
Confidence 1 111 112237888999999866899999999999999988888777 89999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-------GHEQPVTSVAISAELGLVVSGSQLGPVLVH 478 (540)
Q Consensus 406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw 478 (540)
+|++|+||+.|++|++||+.. ++++..+. +|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 201 ---dg~~las~s~D~~i~lwd~~~-----------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 201 ---DGSLFASTGGDGTIVLYNGVD-----------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp ---TSSEEEEEETTSCEEEEETTT-----------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ---CCCEEEEEECCCcEEEEECCC-----------CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999999999865 34555553 799999999999999999999999999999
Q ss_pred eC-CCcEEE-------------------------------------------EecCCCCCCCceEEEEeeCCCEEEEe-c
Q psy1242 479 TT-FGDLLR-------------------------------------------SLDPPSGFASPESVVMSREGVIVVNY-E 513 (540)
Q Consensus 479 ~~-~g~~~~-------------------------------------------~l~~~~~~~~v~~l~fspdg~~l~s~-~ 513 (540)
+. +++++. .+.+|.. .|.+++|+|+|++|+++ .
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADA 344 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEET
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeC
Confidence 76 555543 3345666 78999999999999984 6
Q ss_pred CCeEEEEecC-CcEEEee--ecCCcceec
Q psy1242 514 RGHIAAFTMN-GNRLRHE--SHNDNLQKT 539 (540)
Q Consensus 514 dg~I~lw~~~-g~~l~~~--~~~~~V~~v 539 (540)
|++|++|++. |+.+..+ .|...|.++
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEE
Confidence 8999999987 5555543 266666554
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.2e-27 Score=245.78 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=191.0
Q ss_pred cCCCCCeeeecccceeeecCCcEEEEEccC------cceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCe
Q psy1242 243 FPSNSPICHVTANTYVTLHMPSVVTVTANH------QFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPIL 311 (540)
Q Consensus 243 f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~------D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l 311 (540)
.+++.|.+|...+..+.+.+++..++|+|. |++|++|+...+..... ..|... ...+.|++|+.+
T Consensus 33 ~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~----V~~~~~s~d~~~ 108 (357)
T 4g56_B 33 RPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG----VTDVAWVSEKGI 108 (357)
T ss_dssp -------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC----EEEEEEETTTEE
T ss_pred CCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC----EEEEEEcCCCCE
Confidence 344555566666666666677777999997 78899999866543221 234432 335789999988
Q ss_pred eeccCCCCCCccccccCCCc--------CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee
Q psy1242 312 THPTSNNNAPVPKRHLGDNF--------SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT 383 (540)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~ 383 (540)
++++.+ .....+.+.... .....-.+.+++|+|+|++ |++|+.|++|++||+++++.+..+
T Consensus 109 l~~s~d--g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~-------- 177 (357)
T 4g56_B 109 LVASDS--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSY-------- 177 (357)
T ss_dssp EEEETT--SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred EEEECC--CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEE--------
Confidence 776632 223333222110 0111224788999999995 799999999999999999998888
Q ss_pred eeeEEEeeccCcceEEEEeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242 384 SRIVQIIFGHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE 462 (540)
Q Consensus 384 ~~~~~~l~~h~~~Vt~l~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 462 (540)
.+|.+.|++++|+| ++ ..+++++.|++|++||++.... .....+..|...+++++|+|+
T Consensus 178 -------~~h~~~v~~v~~s~----~~~~~~~s~~~dg~v~~wd~~~~~~---------~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 178 -------NAHSSEVNCVAACP----GKDTIFLSCGEDGRILLWDTRKPKP---------ATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp -------CCCSSCEEEEEECT----TCSSCEEEEETTSCEEECCTTSSSC---------BCBCCCTTCCSCEEEEEECTT
T ss_pred -------cCCCCCEEEEEEcc----CCCceeeeeccCCceEEEECCCCce---------eeeeeeccccccccchhhhhc
Confidence 88999999999999 66 4789999999999999876331 112233567788999999997
Q ss_pred C-CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEE-ecCCeEEEEecC-CcEEEeeecCCcce
Q psy1242 463 L-GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQ 537 (540)
Q Consensus 463 g-~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~ 537 (540)
+ .+|++|+.|+.|++|+. +++++.++.+|.. .|.+++|+|++ ++|++ +.|++|++||++ ++.+..+.|.+.|+
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~ 315 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVT 315 (357)
T ss_dssp STTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEE
T ss_pred ccceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEE
Confidence 5 68999999999999976 7888999999988 78999999997 57777 568999999998 77777778999999
Q ss_pred ecC
Q psy1242 538 KTA 540 (540)
Q Consensus 538 ~va 540 (540)
+|+
T Consensus 316 ~va 318 (357)
T 4g56_B 316 GVA 318 (357)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=2.6e-27 Score=245.15 Aligned_cols=240 Identities=17% Similarity=0.152 Sum_probs=180.3
Q ss_pred CcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------------
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------------ 329 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------------ 329 (540)
++..++|+|.|++|++||..++.... ...|...| ..+.|++|+.++++|+.+... ..+.+..
T Consensus 77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v----~~~~~s~~g~~las~~~d~~v-~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV----MECAFAPNGQSVACGGLDSAC-SIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTC----CCCEECTTSSEEEECCSSSCC-EEEECCCCSSCCCSSTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCE----EEEEECCCCCEEEEeeCCCcE-EEEECCCCccccCCcccee
Confidence 33349999999999999987765433 23455443 356799999888887644333 1121110
Q ss_pred CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEE-----ecccceeee--------------------
Q psy1242 330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQII-----FGHYGVVTS-------------------- 384 (540)
Q Consensus 330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l-----~~~~~~v~~-------------------- 384 (540)
.+. .....+.+++|+|++...|++|+.|++|++||+.+++.+..+ .+|...+.+
T Consensus 152 ~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v 230 (380)
T 3iz6_a 152 VLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230 (380)
T ss_dssp BCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred ecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence 011 111224566778876545799999999999999999888776 455544421
Q ss_pred ---------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC----
Q psy1242 385 ---------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE---- 451 (540)
Q Consensus 385 ---------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~---- 451 (540)
..+..+.+|.+.|++++|+| ++++|+||+.|++|++||+++ ++++..+..+.
T Consensus 231 ~~wd~~~~~~~~~~~~~h~~~v~~v~~~p----~~~~l~s~s~D~~i~lwd~~~-----------~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 231 RLWDLRITSRAVRTYHGHEGDINSVKFFP----DGQRFGTGSDDGTCRLFDMRT-----------GHQLQVYNREPDRND 295 (380)
T ss_dssp EEEETTTTCCCCEEECCCSSCCCEEEECT----TSSEEEEECSSSCEEEEETTT-----------TEEEEEECCCCSSSC
T ss_pred EEEECCCCCcceEEECCcCCCeEEEEEec----CCCeEEEEcCCCeEEEEECCC-----------CcEEEEecccccccc
Confidence 34567789999999999999 999999999999999999886 33455554432
Q ss_pred ---CCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe----cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec
Q psy1242 452 ---QPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL----DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM 522 (540)
Q Consensus 452 ---~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l----~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~ 522 (540)
..|++++|+|+|+++++|+.||.|++|+. +++.+..+ .+|.+ .|.+++|+|+|.+|++| .|++|++|++
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC--ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 35899999999999999999999999976 77777777 56777 78999999999999996 5899999998
Q ss_pred CCc
Q psy1242 523 NGN 525 (540)
Q Consensus 523 ~g~ 525 (540)
.+.
T Consensus 374 ~~~ 376 (380)
T 3iz6_a 374 SGH 376 (380)
T ss_dssp CSS
T ss_pred CCC
Confidence 853
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=1.5e-26 Score=251.11 Aligned_cols=263 Identities=21% Similarity=0.247 Sum_probs=209.8
Q ss_pred cccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242 253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS 332 (540)
Q Consensus 253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~ 332 (540)
...+.+.+.+++..+++++.|+++++|+..........+|.+.+. .+.+++|+..+++++.+... ..+.+.....
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~t~~~d~~i-~~w~~~~~~~ 337 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW----GVAFSPDGQTIASASDDKTV-KLWNRNGQHL 337 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE----EEEECTTSSEEEEEETTSCE-EEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeE----EEEECCCCCEEEEEeCCCeE-EEEeCCCCee
Confidence 334455666777789999999999999976543344445654432 46788998877776544332 2222211100
Q ss_pred ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------
Q psy1242 333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS------------------------- 384 (540)
Q Consensus 333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~------------------------- 384 (540)
....-.+.+++++|+|+. +++|+.|++|++||. +++.+..+.+|...|.+
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 011123678899999995 799999999999996 47888888888776643
Q ss_pred -eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC
Q psy1242 385 -RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463 (540)
Q Consensus 385 -~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg 463 (540)
+.+..+.+|...|++++|+| ++++|++++.|++|++||... +.+..+.+|...|++++|+|++
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~----d~~~l~~~~~d~~v~~w~~~~------------~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSP----DDQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTS------------CEEEEEECCSSCEEEEEECTTS
T ss_pred CCEEEEecCCCCCeEEEEECC----CCCEEEEEcCCCEEEEEECCC------------CEEEEEcCCCCCEEEEEEcCCC
Confidence 45577889999999999999 999999999999999999643 5678889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeee-cCCcceecC
Q psy1242 464 GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 464 ~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~-~~~~V~~va 540 (540)
++|++++.|++|++|+.++++++.+.+|.. .|.+++|+|+|++|++ +.|+.|++||.+|+.+..+. |.+.|++|+
T Consensus 480 ~~las~~~d~~i~iw~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp CEEEEEETTSEEEEEETTSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCEEEEEcCCCCEEEEEeCCCC--CEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEE
Confidence 999999999999999999999999999988 7899999999999998 56899999999999998886 999998874
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=7.4e-27 Score=244.43 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=185.5
Q ss_pred eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
|..++..+.+.+++..++|||.|++|++||..+.... ...+|...| ..+.+++++..+++|+.+... ..+.+..
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V----~~v~~~p~~~~l~s~s~D~~i-~~wd~~~ 223 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV----SSVSIMPNGDHIVSASRDKTI-KMWEVQT 223 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCE----EEEEECSSSSEEEEEETTSEE-EEEETTT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCE----EEEEEeCCCCEEEEEeCCCeE-EEEECCC
Confidence 3344455556666667999999999999999776543 334565433 357788998877776544332 2222221
Q ss_pred CcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242 330 NFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC 405 (540)
Q Consensus 330 ~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~ 405 (540)
... ......+.+++++|+|+ +|++|+.|++|++||+.++++...+ .+|...|.+++|+|
T Consensus 224 ~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~~~- 286 (410)
T 1vyh_C 224 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAEL---------------REHRHVVECISWAP- 286 (410)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECC-
T ss_pred CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEe---------------cCCCceEEEEEEcC-
Confidence 100 01112367888999999 4799999999999999999988888 78999999999998
Q ss_pred ccCC--------------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242 406 NITA--------------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL 465 (540)
Q Consensus 406 ~~~d--------------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~ 465 (540)
+ |.+|++|+.|++|++||++. +.++..+.+|...|++++|+|++++
T Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-----------~~~~~~~~~h~~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 287 ---ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------GMCLMTLVGHDNWVRGVLFHSGGKF 352 (410)
T ss_dssp ---SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSC
T ss_pred ---cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-----------CceEEEEECCCCcEEEEEEcCCCCE
Confidence 4 67899999999999999876 4678899999999999999999999
Q ss_pred EEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242 466 VVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM 522 (540)
Q Consensus 466 lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~ 522 (540)
|++|+.||+|++|+. +++++.++.+|.. .|.+++|+|++.+|++ +.|++|++|++
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999976 7788899999988 7899999999999988 56899999986
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=236.76 Aligned_cols=254 Identities=17% Similarity=0.137 Sum_probs=186.4
Q ss_pred eeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc----cCCCCcCCCCCCCCCccccCCCCee
Q psy1242 237 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI----QSPSYAETPGSPPGNLPLTLDPILT 312 (540)
Q Consensus 237 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~----~~~~~~~~v~~~~~~~~~s~D~~l~ 312 (540)
.+..+.|+|++.. ++|++.|++|++|+..+.... ...+|.+.| ..+.|++|+.++
T Consensus 18 ~v~~l~~sp~g~~-----------------las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v----~~~~~sp~g~~l 76 (345)
T 3fm0_A 18 RCWFLAWNPAGTL-----------------LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV----RKVAWSPCGNYL 76 (345)
T ss_dssp CEEEEEECTTSSC-----------------EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCE----EEEEECTTSSEE
T ss_pred cEEEEEECCCCCE-----------------EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcE----EEEEECCCCCEE
Confidence 5666677776665 999999999999998765311 123565443 357899999888
Q ss_pred eccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeee
Q psy1242 313 HPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI 386 (540)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~ 386 (540)
++|+.+.... .+.+... .. ....-.+.+++|+|+++. |++|+.|++|++||+.+++....+
T Consensus 77 ~s~s~D~~v~-iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~----------- 143 (345)
T 3fm0_A 77 ASASFDATTC-IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECV----------- 143 (345)
T ss_dssp EEEETTSCEE-EEEECCC-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEE-----------
T ss_pred EEEECCCcEE-EEEccCCCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEE-----------
Confidence 8776544332 2221110 00 011223788999999995 799999999999999876432211
Q ss_pred EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV 466 (540)
Q Consensus 387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l 466 (540)
..+.+|...|++++|+| ++.+|++|+.|++|++||.+... ..+...+.+|...|++++|+|++++|
T Consensus 144 -~~~~~h~~~v~~~~~~p----~~~~l~s~s~d~~i~~w~~~~~~---------~~~~~~~~~h~~~v~~l~~sp~g~~l 209 (345)
T 3fm0_A 144 -SVLNSHTQDVKHVVWHP----SQELLASASYDDTVKLYREEEDD---------WVCCATLEGHESTVWSLAFDPSGQRL 209 (345)
T ss_dssp -EEECCCCSCEEEEEECS----SSSCEEEEETTSCEEEEEEETTE---------EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -EEecCcCCCeEEEEECC----CCCEEEEEeCCCcEEEEEecCCC---------EEEEEEecCCCCceEEEEECCCCCEE
Confidence 22378999999999999 99999999999999999987532 13567889999999999999999999
Q ss_pred EEEeCCCcEEEEeC-C---------------CcEEEEecC-CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc---
Q psy1242 467 VSGSQLGPVLVHTT-F---------------GDLLRSLDP-PSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGN--- 525 (540)
Q Consensus 467 asgs~Dg~v~iw~~-~---------------g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~--- 525 (540)
++|+.||+|+||+. . .+++.++.+ |.. .|.+++|+|++..|++ +.|+.|++|+.+..
T Consensus 210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 287 (345)
T 3fm0_A 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP 287 (345)
T ss_dssp EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence 99999999999963 1 134555655 555 7899999999998888 56899999997632
Q ss_pred ------EEEee--ecCCcceecC
Q psy1242 526 ------RLRHE--SHNDNLQKTA 540 (540)
Q Consensus 526 ------~l~~~--~~~~~V~~va 540 (540)
..... .|.+.|++|+
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEE
T ss_pred ceeeEEEEeeecccccCcEeEeE
Confidence 11121 3778888764
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=5.3e-26 Score=229.54 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=149.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++|+|+|++ |++|+.|++|++||+.+++.+..+ .+|.+.|.+++|+| ++.+|++|+.
T Consensus 68 v~~~~~s~dg~~-l~s~s~D~~v~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~~~~l~s~s~ 127 (319)
T 3frx_A 68 VQDCTLTADGAY-ALSASWDKTLRLWDVATGETYQRF---------------VGHKSDVMSVDIDK----KASMIISGSR 127 (319)
T ss_dssp EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE---------------ECCSSCEEEEEECT----TSCEEEEEET
T ss_pred EEEEEECCCCCE-EEEEeCCCEEEEEECCCCCeeEEE---------------ccCCCcEEEEEEcC----CCCEEEEEeC
Confidence 678888999995 799999999999999999998888 89999999999999 9999999999
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE------LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd------g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
|++|++||++. .++..+.+|...|.+++++|. +..+++++.|++|++|+. +++....+.+|
T Consensus 128 D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 128 DKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TSCEEEEETTS------------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCeEEEEECCC------------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 99999999863 467888999999999999985 448999999999999977 67888899999
Q ss_pred CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242 492 SGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKTA 540 (540)
Q Consensus 492 ~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~va 540 (540)
.. .|.+++|+|+|++|++ +.||.|++||+. ++.+..+.+.+.|.+++
T Consensus 196 ~~--~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 244 (319)
T 3frx_A 196 NS--NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244 (319)
T ss_dssp CS--CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE
T ss_pred CC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Confidence 88 7899999999999998 468999999987 67777777777777653
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=1.9e-25 Score=242.48 Aligned_cols=262 Identities=21% Similarity=0.235 Sum_probs=205.4
Q ss_pred ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-
Q psy1242 254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS- 332 (540)
Q Consensus 254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~- 332 (540)
......+.+++..+++++.|++|++|+..........+|...+ ..+.+++|+..+++++.+... ..+.......
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v----~~v~~~~d~~~l~~~~~d~~i-~~w~~~~~~~~ 297 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV----NGVAFRPDGQTIASASDDKTV-KLWNRNGQLLQ 297 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSCE-EEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCE----EEEEEcCCCCEEEEEeCCCEE-EEEeCCCcEEE
Confidence 3444556666677999999999999997654333344555333 356788999877776544332 1121111100
Q ss_pred --cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------
Q psy1242 333 --QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------- 384 (540)
Q Consensus 333 --~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------- 384 (540)
....-.+.+++++|+++. +++++.|++|++||.. ++.+..+.+|...+.+
T Consensus 298 ~~~~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred EEecCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 011123678889999995 7999999999999986 4555667777665532
Q ss_pred eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC
Q psy1242 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464 (540)
Q Consensus 385 ~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~ 464 (540)
+.+..+.+|...|++++|+| +|++|++++.|++|++||.. ++.+..+.+|...|++++|+|+++
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~----dg~~l~~~~~d~~v~~~~~~------------~~~~~~~~~~~~~v~~~~~s~d~~ 439 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWNRN------------GQLLQTLTGHSSSVWGVAFSPDDQ 439 (577)
T ss_dssp CEEEEEECCSSCEEEEEECT----TSSCEEEEETTSEEEEECTT------------CCEEEEEECCSSCEEEEEECTTSS
T ss_pred CEEEEecCCCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCC------------CCEEEEecCCCCCeEEEEECCCCC
Confidence 45677789999999999999 99999999999999999954 356788999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeee-cCCcceecC
Q psy1242 465 LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 465 ~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~-~~~~V~~va 540 (540)
+|++++.|++|++|+.+++.+..+.+|.. .|.+++|+|+|++|++ +.|+.|++|+.+|+.+..+. |.+.|++|+
T Consensus 440 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~--~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 440 TIASASDDKTVKLWNRNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 515 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEE
Confidence 99999999999999999999999999988 7899999999999998 46899999999999998886 889998874
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=7.5e-26 Score=232.39 Aligned_cols=229 Identities=15% Similarity=0.089 Sum_probs=167.6
Q ss_pred eeecCCcEEEEEccCcceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC---
Q psy1242 258 VTLHMPSVVTVTANHQFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD--- 329 (540)
Q Consensus 258 ~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~--- 329 (540)
..+.++.. +++++.|++|++||+.++..... .+|.+.| ..+.|++|+..+++|+.+... ..+.+..
T Consensus 100 ~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V----~~v~~spdg~~l~sgs~dg~v-~iwd~~~~~~ 173 (357)
T 4g56_B 100 VAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV----KTLSVFSDGTQAVSGGKDFSV-KVWDLSQKAV 173 (357)
T ss_dssp EEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCE----EEEEECSSSSEEEEEETTSCE-EEEETTTTEE
T ss_pred EEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCE----EEEEECCCCCEEEEEeCCCeE-EEEECCCCcE
Confidence 34445554 45678899999999877553322 2454333 357899999888877544433 2222211
Q ss_pred --CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 330 --NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 330 --~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
.+. ...-.+.+++|++++..++++++.|++|++||+++++....+.. ..|...+++++|+|.
T Consensus 174 ~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-------------~~~~~~v~~v~~sp~-- 237 (357)
T 4g56_B 174 LKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-------------CASDTIPTSVTWHPE-- 237 (357)
T ss_dssp EEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-------------TTCCSCEEEEEECTT--
T ss_pred EEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-------------ccccccccchhhhhc--
Confidence 111 11123788899999876789999999999999998887655411 457788999999993
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
++.+|++|+.|++|++||++. ++++..+.+|...|++++|+|++ ++||+|+.||+|+||+. +++++
T Consensus 238 -~~~~la~g~~d~~i~~wd~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 238 -KDDTFACGDETGNVSLVNIKN-----------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp -STTEEEEEESSSCEEEEESSC-----------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred -ccceEEEeecccceeEEECCC-----------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 367899999999999999876 45778999999999999999987 57999999999999987 56666
Q ss_pred EEecCCCCCCCceEEEEee-CCCEEEE-ecCCeEEEEecC
Q psy1242 486 RSLDPPSGFASPESVVMSR-EGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fsp-dg~~l~s-~~dg~I~lw~~~ 523 (540)
+.+ +|.+ .|.+|+|+| ++.+|++ +.||+|++|++.
T Consensus 306 ~~~-~H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 306 RDL-SHRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEC-CCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEC-CCCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 554 6777 789999998 7999887 569999999986
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=3.1e-25 Score=226.01 Aligned_cols=208 Identities=14% Similarity=0.183 Sum_probs=164.0
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 342 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 342 (540)
++..++|+|.|++|++|+......... . ......+.++.. .+.++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~---------------------~---------~~~~~~l~~h~~-----~V~~~ 82 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGY---------------------F---------GIPHKALTGHNH-----FVSDL 82 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSB---------------------S---------EEEEEEECCCSS-----CEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccc---------------------c---------ccccchhccCCC-----ceEEE
Confidence 445699999999999999754211000 0 001111222211 26788
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV 422 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV 422 (540)
+|+|++.+ +++|+.|++|++||+++++.+..+ .+|.+.|.+++|+| ++++|++|+.|++|
T Consensus 83 ~~~~~~~~-l~s~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~v~~sp----~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 83 ALSQENCF-AISSSWDKTLRLWDLRTGTTYKRF---------------VGHQSEVYSVAFSP----DNRQILSAGAEREI 142 (343)
T ss_dssp EECSSTTE-EEEEETTSEEEEEETTSSCEEEEE---------------ECCCSCEEEEEECS----STTEEEEEETTSCE
T ss_pred EECCCCCE-EEEEcCCCcEEEEECCCCcEEEEE---------------cCCCCcEEEEEECC----CCCEEEEEcCCCEE
Confidence 89999995 799999999999999999988888 88999999999999 99999999999999
Q ss_pred EEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCcEEEEec
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAEL----------GLVVSGSQLGPVLVHTTFGDLLRSLD 489 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg----------~~lasgs~Dg~v~iw~~~g~~~~~l~ 489 (540)
++||+... ..... .+|...|.+++|+|++ .++++++.||+|++|+.+++....+.
T Consensus 143 ~~wd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 210 (343)
T 2xzm_R 143 KLWNILGE------------CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210 (343)
T ss_dssp EEEESSSC------------EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE
T ss_pred EEEeccCC------------ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc
Confidence 99998631 22222 3789999999999987 78999999999999998888888999
Q ss_pred CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec-C-CcEEEeeecCCcceec
Q psy1242 490 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM-N-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 490 ~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~-~-g~~l~~~~~~~~V~~v 539 (540)
.|.. .|.+++|+|+|++|+++ .|+.|++||+ + +..+..+.+...|.++
T Consensus 211 ~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v 261 (343)
T 2xzm_R 211 AHES--NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261 (343)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEE
T ss_pred Cccc--cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEE
Confidence 9988 78999999999999985 6899999998 3 3444444455666665
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=3.8e-25 Score=221.48 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=184.0
Q ss_pred ecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---cc
Q psy1242 260 LHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QK 334 (540)
Q Consensus 260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~ 334 (540)
+.+++..+++++.|++|++|+..++.... ..+|...+ ..+.|++|+.++++++.+... ..+.+.... . ..
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~~~d~~i-~vwd~~~~~~~~~~~~ 105 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI----SDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKG 105 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCce----EEEEEcCCCCEEEEECCCCEE-EEEECCCCcEEEEEcC
Confidence 33344449999999999999987665433 23454333 357789999888877544332 222222110 0 01
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
..-.+.+++|+|+++. |++|+.|++|++||+++++.+..+ .+|...|++++|+| ++++|+
T Consensus 106 ~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~----~~~~l~ 165 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTL---------------PAHSDPVSAVHFNR----DGSLIV 165 (312)
T ss_dssp CSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECT----TSSEEE
T ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEe---------------cCCCCcEEEEEEcC----CCCEEE
Confidence 1123688899999995 799999999999999999988888 78999999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242 415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS 492 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~ 492 (540)
+|+.|++|++||++. .+++..+ ..+...+.+++|+|++++|++++.||.|++|+. +++.+..+.+|.
T Consensus 166 ~~~~d~~i~~wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 166 SSSYDGLCRIWDTAS-----------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp EEETTSCEEEEETTT-----------CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred EEeCCCcEEEEECCC-----------CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 999999999999876 2344444 456778999999999999999999999999976 788889998876
Q ss_pred CCCCceEEEEe-eCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 493 GFASPESVVMS-REGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 493 ~~~~v~~l~fs-pdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
.........++ +++.+|+++ .||.|++|+++ ++.+..+. |.+.|.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286 (312)
T ss_dssp CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence 63222233444 678888885 58999999997 77777775 888887653
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-25 Score=227.36 Aligned_cols=238 Identities=18% Similarity=0.151 Sum_probs=173.6
Q ss_pred EEEEccCcceEEEEcCCCCCc--ccC--CC-CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----cC----
Q psy1242 266 VTVTANHQFAINRWNPDYAAS--IQS--PS-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----FS---- 332 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~--~~~--~~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----~~---- 332 (540)
.++|++.|++|++|+...+.. ... .+ |.+.| ..+.|++|+.++++|+.+... ..+.+... ..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~las~s~D~~v-~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI----RSVAWRPHTSLLAAGSFDSTV-SIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCE----EEEEECTTSSEEEEEETTSCE-EEEEC-------CCCEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCE----EEEEECCCCCEEEEEeCCCcE-EEEEcccCcCccccceeE
Confidence 599999999999999876431 111 22 55433 357899999888877654433 22222110 00
Q ss_pred ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242 333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC 405 (540)
Q Consensus 333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~ 405 (540)
....-.+.+++|+|+|++ |++|+.|++|++||++.. +++..+ .+|...|++++|+|
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~---------------~~h~~~v~~v~~~p- 163 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISVL---------------QEHSQDVKHVIWHP- 163 (330)
T ss_dssp EEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEE---------------CCCSSCEEEEEECS-
T ss_pred EEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEe---------------ccCCCceEEEEECC-
Confidence 111223788999999995 799999999999999432 344455 88999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC-
Q psy1242 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTTFG- 482 (540)
Q Consensus 406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~~g- 482 (540)
++.+|++|+.|++|++||..... .+++..+.+|...|.+++|+|+ +..|++|+.|++|++|+...
T Consensus 164 ---~~~~l~s~s~D~~i~iW~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 164 ---SEALLASSSYDDTVRIWKDYDDD---------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ---SSSEEEEEETTSCEEEEEEETTE---------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ---CCCEEEEEcCCCeEEEEECCCCC---------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999999999999999976522 2467889999999999999998 67899999999999996522
Q ss_pred --------cEEEEecC-CCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc---EEEee--ecCC-cceec
Q psy1242 483 --------DLLRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN---RLRHE--SHND-NLQKT 539 (540)
Q Consensus 483 --------~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~---~l~~~--~~~~-~V~~v 539 (540)
.+...+.. |.. .|.+++|++++.++.++.||.|++|+.... .+... .|.. .|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKR--QVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSS--CEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred CccccceeEEeeeccccccc--ceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 34555554 666 789999998775555578999999998632 23332 2555 67665
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=2.6e-25 Score=222.04 Aligned_cols=240 Identities=15% Similarity=0.063 Sum_probs=173.4
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC---cccCCCCcCCCCCCCCCccccC--
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTL-- 307 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~---~~~~~~~~~~v~~~~~~~~~s~-- 307 (540)
.|.+.+..+.|++++.. ++|++.|++|++|+..... .....+|.+.|. .+.|++
T Consensus 7 ~h~~~V~~~~~s~~g~~-----------------las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~----~v~~s~~~ 65 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKR-----------------MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW----RVDWAHPK 65 (297)
T ss_dssp SCSSCEEEEEECTTSSE-----------------EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE----EEEECCGG
T ss_pred CCcCceEEEEECCCCCE-----------------EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE----EEEecCCC
Confidence 45566667777766655 9999999999999986432 223346765443 456664
Q ss_pred CCCeeeccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeE--EEEEec
Q psy1242 308 DPILTHPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARI--VQIIFG 377 (540)
Q Consensus 308 D~~l~~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~--~~~l~~ 377 (540)
++.++++|+.+... ..+.+... .. ......+.+++|+|+ |. +|++|+.|++|++||++++.. ...+
T Consensus 66 ~g~~l~s~s~D~~v-~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~-- 141 (297)
T 2pm7_B 66 FGTILASCSYDGKV-MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIII-- 141 (297)
T ss_dssp GCSEEEEEETTTEE-EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEE--
T ss_pred cCCEEEEEcCCCEE-EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeee--
Confidence 36677766544332 23333211 00 011223788899997 77 579999999999999987632 2333
Q ss_pred ccceeeeeeEEEeeccCcceEEEEeccCccCC-------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcce
Q psy1242 378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444 (540)
Q Consensus 378 ~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~ 444 (540)
.+|...|.+++|+| + +++|++|+.|++|++||++..... ..+.
T Consensus 142 -------------~~h~~~v~~~~~~p----~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-------~~~~ 197 (297)
T 2pm7_B 142 -------------DAHAIGVNSASWAP----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLE 197 (297)
T ss_dssp -------------ECCSSCEEEEEECC----CC------------CCEEEEEETTSCEEEEEEETTTTE-------EEEE
T ss_pred -------------ecccCccceEeecC----CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-------EEEE
Confidence 78999999999999 5 579999999999999998753211 1256
Q ss_pred EEeccCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC---c-EEEEe--cCCCCCCCceEEEEeeCCCEEEE-ecC
Q psy1242 445 ATLTGHEQPVTSVAISAEL---GLVVSGSQLGPVLVHTTFG---D-LLRSL--DPPSGFASPESVVMSREGVIVVN-YER 514 (540)
Q Consensus 445 ~~l~~h~~~V~~v~~spdg---~~lasgs~Dg~v~iw~~~g---~-~~~~l--~~~~~~~~v~~l~fspdg~~l~s-~~d 514 (540)
..+.+|...|.+++|+|++ .+||+|+.|++|+||+... . ....+ ..+.. .|.+++|+|+|++|++ +.|
T Consensus 198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEETT
T ss_pred EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC--cEEEEEECCCCCEEEEEcCC
Confidence 7889999999999999985 7999999999999997532 1 22334 34555 7899999999999988 568
Q ss_pred CeEEEEecC
Q psy1242 515 GHIAAFTMN 523 (540)
Q Consensus 515 g~I~lw~~~ 523 (540)
+.|++|+.+
T Consensus 276 ~~v~lw~~~ 284 (297)
T 2pm7_B 276 NKVTLWKEN 284 (297)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999975
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=2.9e-25 Score=226.04 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=173.8
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCc-----ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-----IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-----~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
.....+.+++..+++++.|+++++|+...... ....+|.+.+ ..+.+++++.+++++. + .....+.+..
T Consensus 100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~l~s~s~-d-~~i~~wd~~~ 173 (340)
T 1got_B 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL----SCCRFLDDNQIVTSSG-D-TTCALWDIET 173 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE----EEEEEEETTEEEEEET-T-SCEEEEETTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE----EEEEECCCCcEEEEEC-C-CcEEEEECCC
Confidence 34445666677799999999999999875431 1122454333 2455677777555442 2 2222222221
Q ss_pred C-----cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 330 N-----FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 330 ~-----~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
. +. .....+.+++|+|+++ ++++|+.|++|++||+++++.+..+ .+|...|++++|+|
T Consensus 174 ~~~~~~~~-~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~---------------~~h~~~v~~v~~~p 236 (340)
T 1got_B 174 GQQTTTFT-GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF---------------TGHESDINAICFFP 236 (340)
T ss_dssp TEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEE---------------CCCSSCEEEEEECT
T ss_pred CcEEEEEc-CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEE---------------cCCcCCEEEEEEcC
Confidence 1 11 1112378889999999 5799999999999999999988888 88999999999999
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F 481 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~ 481 (540)
++++|++|+.|++|++||++.. +.+..+. .+...|++++|+|++++|++|+.||.|++|+. +
T Consensus 237 ----~~~~l~s~s~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 237 ----NGNAFATGSDDATCRLFDLRAD-----------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ----TSSEEEEEETTSCEEEEETTTT-----------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ----CCCEEEEEcCCCcEEEEECCCC-----------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 9999999999999999998762 3344443 33457999999999999999999999999976 7
Q ss_pred CcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEe
Q psy1242 482 GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT 521 (540)
Q Consensus 482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~ 521 (540)
++.+..+.+|.. .|.+++|+|+|.+|++| .|+.|++|+
T Consensus 302 ~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 ADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 888999999998 88999999999999985 689999996
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=8.1e-25 Score=227.38 Aligned_cols=255 Identities=16% Similarity=0.101 Sum_probs=187.5
Q ss_pred eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCC--------------CCCCCCccccCCCCeeecc
Q psy1242 251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETP--------------GSPPGNLPLTLDPILTHPT 315 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v--------------~~~~~~~~~s~D~~l~~~g 315 (540)
|...+..+.+.+++..+++++ +.++++|+..++...... .+.... ......+.|++|+.++++|
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 444455556666666688876 789999998776533222 111100 0012357899999888877
Q ss_pred CCCCCCccccccCCCc----CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee
Q psy1242 316 SNNNAPVPKRHLGDNF----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF 391 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~ 391 (540)
+.+... ..+.+.... -....-.+.+++|+|+++. |++|+.|++|++||+++++....+
T Consensus 142 ~~d~~i-~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~---------------- 203 (393)
T 1erj_A 142 AEDRLI-RIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL---------------- 203 (393)
T ss_dssp ETTSCE-EEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE----------------
T ss_pred cCCCeE-EEEECCCCcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEE----------------
Confidence 654333 222221100 0011123788899999995 789999999999999999887766
Q ss_pred ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-------ccCCCCEEEEEEcCCCC
Q psy1242 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-------TGHEQPVTSVAISAELG 464 (540)
Q Consensus 392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-------~~h~~~V~~v~~spdg~ 464 (540)
.+.+.+.+++|+|. ++++|++|+.|++|++||+++. ..+..+ .+|...|.+++|+|+++
T Consensus 204 ~~~~~v~~~~~~~~---~~~~l~~~s~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 204 SIEDGVTTVAVSPG---DGKYIAAGSLDRAVRVWDSETG-----------FLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp ECSSCEEEEEECST---TCCEEEEEETTSCEEEEETTTC-----------CEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred EcCCCcEEEEEECC---CCCEEEEEcCCCcEEEEECCCC-----------cEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 35678999999984 7899999999999999998763 233333 68999999999999999
Q ss_pred EEEEEeCCCcEEEEeCC-------------CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242 465 LVVSGSQLGPVLVHTTF-------------GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRH 529 (540)
Q Consensus 465 ~lasgs~Dg~v~iw~~~-------------g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~ 529 (540)
+|++|+.||+|++|+.. +.+...+.+|.. .|.+++|+|++.+|++ +.|+.|++||+. |+.+..
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 99999999999999752 345667788887 7899999999999998 468999999987 888877
Q ss_pred ee-cCCcceecC
Q psy1242 530 ES-HNDNLQKTA 540 (540)
Q Consensus 530 ~~-~~~~V~~va 540 (540)
+. |.+.|.+++
T Consensus 348 l~~h~~~v~~v~ 359 (393)
T 1erj_A 348 LQGHRNSVISVA 359 (393)
T ss_dssp EECCSSCEEEEE
T ss_pred ECCCCCCEEEEE
Confidence 75 888887763
No 25
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=4.4e-25 Score=227.42 Aligned_cols=171 Identities=12% Similarity=0.048 Sum_probs=139.2
Q ss_pred EEEEEEecCCCEE-EEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------e--eEEE
Q psy1242 339 HNCFVTTVDSRFL-LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------R--IVQI 389 (540)
Q Consensus 339 ~~~~~~spdg~~l-lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~--~~~~ 389 (540)
+.+++|||||+++ +|+|+.|++|+|||+.+++.+..+. |...|.+ . ....
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT 214 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence 5678899999975 2456689999999999999888875 4444432 1 1233
Q ss_pred eeccCcceEEEEeccCccCCCcEEEEEeCCC----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242 390 IFGHYGVVTCLSRSECNITADCFIASGSADC----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL 465 (540)
Q Consensus 390 l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~ 465 (540)
..+|...|++++|+| ++..+++++.|+ ++++|++...... ......+.+|...|++++|+|+|++
T Consensus 215 ~~~~~~~v~~v~fsp----dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 215 DFDKNWSLSKINFIA----DDTVLIAASLKKGKGIVLTKISIKSGNTS-------VLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp CCCTTEEEEEEEEEE----TTEEEEEEEESSSCCEEEEEEEEETTEEE-------EEEEEEEESSCSCEEEEEECTTSCE
T ss_pred cCCCCCCEEEEEEcC----CCCEEEEEecCCcceeEEeecccccceec-------ceeeeeecCCCCCeEeEEECCCCCc
Confidence 457889999999999 999999999887 6788887653221 1234567899999999999999999
Q ss_pred EEEEeCCCcEEEEeC-CCcEEEEe-cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 466 VVSGSQLGPVLVHTT-FGDLLRSL-DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 466 lasgs~Dg~v~iw~~-~g~~~~~l-~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
||+|+.|++|+||+. +++++.++ .+|.. +|++|+|+|||++|+++ .|++|+||++.
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999986 88888875 78888 89999999999999985 68999999975
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=6.2e-25 Score=228.29 Aligned_cols=248 Identities=18% Similarity=0.153 Sum_probs=181.7
Q ss_pred ceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-Cc
Q psy1242 256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQ 333 (540)
Q Consensus 256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~~ 333 (540)
+.+.+.+++..+++++.|++|++||..+.... ...+|...| ..+.|++|+..+++++.+... ..+.+.... ..
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v----~~~~~~p~~~~l~s~s~d~~v-~iwd~~~~~~~~ 201 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI----YSLDYFPSGDKLVSGSGDRTV-RIWDLRTGQCSL 201 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTTEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE----EEEEEcCCCCEEEEecCCCcE-EEEECCCCeeEE
Confidence 44567778888999999999999999876533 234565443 357788999877777544332 223322110 00
Q ss_pred --ceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242 334 --KLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410 (540)
Q Consensus 334 --~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg 410 (540)
...-.+.+++++| +++ +|++|+.|++|++||+++++.+..+.... ....+|.+.|++++|+| +|
T Consensus 202 ~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~----~g 268 (393)
T 1erj_A 202 TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN--------ESGTGHKDSVYSVVFTR----DG 268 (393)
T ss_dssp EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECT----TS
T ss_pred EEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc--------cCCCCCCCCEEEEEECC----CC
Confidence 0111367888899 777 57999999999999999998876662111 11257999999999999 99
Q ss_pred cEEEEEeCCCcEEEEEcCCCccccc-CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242 411 CFIASGSADCTVLLWHWNARTQSIV-GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 411 ~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l 488 (540)
++|++|+.|++|++||++....... .....+.+...+.+|...|.+++|+|++.+|++|+.||.|++|+. +++.+..+
T Consensus 269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence 9999999999999999875321100 001123466788899999999999999999999999999999976 88999999
Q ss_pred cCCCCCCCceEEEEee------CCCEEEE-ecCCeEEEEecC
Q psy1242 489 DPPSGFASPESVVMSR------EGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 489 ~~~~~~~~v~~l~fsp------dg~~l~s-~~dg~I~lw~~~ 523 (540)
.+|.. .|.+++|++ ++.+|++ +.||+|++|++.
T Consensus 349 ~~h~~--~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 349 QGHRN--SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ECCSS--CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCC--CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 99988 789999986 6788888 568999999975
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=4.9e-25 Score=220.79 Aligned_cols=235 Identities=13% Similarity=0.151 Sum_probs=181.2
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC--c
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--F 331 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--~ 331 (540)
.....+.++...+++++.|++|++||..++.... ..+|.+.|. .+.+++++.++++|+.+... ..+.+... .
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~sgs~D~~v-~lWd~~~~~~~ 132 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR----SIAVHPTKPYVLSGSDDLTV-KLWNWENNWAL 132 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE----EEEECSSSSEEEEEETTSCE-EEEEGGGTTEE
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE----EEEEcCCCCEEEEECCCCeE-EEEECCCCcch
Confidence 3344455566679999999999999998766433 345664443 57789999888877655443 22222211 0
Q ss_pred ---CcceeeEEEEEEEecC-CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 332 ---SQKLRVRHNCFVTTVD-SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 332 ---~~~~~v~~~~~~~spd-g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
-....-.+.|++|+|+ +. +|++|+.|++|++||+.+++....+. .+|...|.+++++|.
T Consensus 133 ~~~~~~h~~~v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~~~~~~~~~--------------~~~~~~v~~~~~~~~-- 195 (304)
T 2ynn_A 133 EQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLT--------------TGQERGVNYVDYYPL-- 195 (304)
T ss_dssp EEEECCCCSCEEEEEECTTCTT-EEEEEETTSEEEEEETTCSSCSEEEE--------------CCCTTCEEEEEECCS--
T ss_pred hhhhcccCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCccceec--------------cCCcCcEEEEEEEEc--
Confidence 0111223788999994 56 58999999999999998776655441 467788999999862
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242 408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR 486 (540)
Q Consensus 408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~ 486 (540)
.++.+|++|+.|++|++||++. ++++..+.+|...|.+++|+|++.+|++|+.||+|++|+. ++++++
T Consensus 196 ~~~~~l~s~s~D~~i~iWd~~~-----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 196 PDKPYMITASDDLTIKIWDYQT-----------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp TTCCEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCEEEEEcCCCeEEEEeCCC-----------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 1678999999999999999876 4678899999999999999999999999999999999976 789999
Q ss_pred EecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecCC
Q psy1242 487 SLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNG 524 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~g 524 (540)
++..+.. .+.+++|+|+|. ++++|.++.+.+|++..
T Consensus 265 ~~~~~~~--~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 265 TLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EECCSSS--SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred eccCCCc--cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9998877 789999999886 68888888899998764
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=222.86 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=173.5
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcc-------cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-------QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL 327 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-------~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~ 327 (540)
.....+.+++..+++++.|+++++|+....... ....|.+.+ ..+.|++++..+++++.+... ..+.+
T Consensus 109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~t~s~D~~v-~lwd~ 183 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL----SACSFTNSDMQILTASGDGTC-ALWDV 183 (354)
T ss_dssp CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCE----EEEEECSSSSEEEEEETTSEE-EEEET
T ss_pred EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcE----EEEEEeCCCCEEEEEeCCCcE-EEEeC
Confidence 445567778888999999999999987643211 112344322 246788888766666543322 22222
Q ss_pred CC------CcCcceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE
Q psy1242 328 GD------NFSQKLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC 399 (540)
Q Consensus 328 ~~------~~~~~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~ 399 (540)
.. ...+... +.+++++| +|+ +|++|+.||+|++||+++++++..+ .+|...|++
T Consensus 184 ~~~~~~~~~~~h~~~--v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~~~~~---------------~~h~~~v~~ 245 (354)
T 2pbi_B 184 ESGQLLQSFHGHGAD--VLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQCVQAF---------------ETHESDVNS 245 (354)
T ss_dssp TTCCEEEEEECCSSC--EEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEE
T ss_pred CCCeEEEEEcCCCCC--eEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCCCeEE
Confidence 21 1112222 55666666 567 5799999999999999999988888 889999999
Q ss_pred EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
++|+| ++.+|++|+.|++|++||++.. +.+..+.. +...+.+++|+|++.+|++|+.|++|++
T Consensus 246 v~~~p----~~~~l~s~s~D~~v~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 246 VRYYP----SGDAFASGSDDATCRLYDLRAD-----------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp EEECT----TSSEEEEEETTSCEEEEETTTT-----------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEeC----CCCEEEEEeCCCeEEEEECCCC-----------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 99999 9999999999999999998762 33444433 3457899999999999999999999999
Q ss_pred EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEe
Q psy1242 478 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT 521 (540)
Q Consensus 478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~ 521 (540)
|+. +++.+..+.+|.. .|.+++|+|+|++|+++ .|++|++|+
T Consensus 311 wd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 986 8899999999988 88999999999999985 689999996
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.93 E-value=2.6e-24 Score=219.61 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=172.9
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCc---ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF 331 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~---~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~ 331 (540)
+..+.+.+++..+++++.|+++++|+...... ....+|.+.| ..+.|++|+.++++|+.+... ..+.+....
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~l~s~s~D~~v-~iwd~~~~~ 138 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV----KSVAWAPSGNLLATCSRDKSV-WVWEVDEED 138 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE----EEEEECTTSSEEEEEETTSCE-EEEEECTTS
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc----eEEEEeCCCCEEEEEECCCeE-EEEECCCCC
Confidence 33444455555699999999999999875432 2234565444 357899999888887654433 223222110
Q ss_pred C-------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242 332 S-------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402 (540)
Q Consensus 332 ~-------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~ 402 (540)
. ....-.+.+++|+|+++. |++|+.|++|++||.++++.. ..+ .+|.+.|++++|
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~---------------~~h~~~v~~l~~ 202 (345)
T 3fm0_A 139 EYECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATL---------------EGHESTVWSLAF 202 (345)
T ss_dssp CEEEEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCEEEEEE
T ss_pred CeEEEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEe---------------cCCCCceEEEEE
Confidence 0 011123788899999995 799999999999999877533 344 899999999999
Q ss_pred ccCccCCCcEEEEEeCCCcEEEEEcCCCcccc-c---CCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 403 SECNITADCFIASGSADCTVLLWHWNARTQSI-V---GETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~-~---~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
+| +|++|++|+.|++|+||+........ . +......++..+.+ |...|.+++|+|++..+++++.|+.|++
T Consensus 203 sp----~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 203 DP----SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278 (345)
T ss_dssp CT----TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred CC----CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE
Confidence 99 99999999999999999974322110 0 00011234555655 8899999999999999999999999999
Q ss_pred EeCC-Cc--------E-EEEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC-CcEEE
Q psy1242 478 HTTF-GD--------L-LRSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMN-GNRLR 528 (540)
Q Consensus 478 w~~~-g~--------~-~~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~-g~~l~ 528 (540)
|+.. +. . .....+|.. .|.+++|+|++. +|++ +.||+|++|++. ++.+.
T Consensus 279 w~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 279 FQEDPNSDPQQPTFSLTAHLHQAHSQ--DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEECTTSCTTSCCEEEEEEETTSSSS--CEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EEeCCCCCcceeeEEEEeeecccccC--cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 9642 11 1 223456777 789999999984 8887 568999999987 44443
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.93 E-value=1.5e-23 Score=210.22 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=185.4
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC------CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP------SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG 328 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~------~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~ 328 (540)
++...+.+++..+++++ |++|++|+.......... .|.. ....+.+++|+..+++++.+... ..+.+.
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i-~~~d~~ 127 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN----YIRSCKLLPDGCTLIVGGEASTL-SIWDLA 127 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS----BEEEEEECTTSSEEEEEESSSEE-EEEECC
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCC----cEEEEEEcCCCCEEEEEcCCCcE-EEEECC
Confidence 34444555555688888 999999999765432222 2332 22357788999777766433222 222222
Q ss_pred CCcC------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242 329 DNFS------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402 (540)
Q Consensus 329 ~~~~------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~ 402 (540)
.... ......+.+++|+|+++. +++|+.||.|++||+++++.+..+ .+|.+.|++++|
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~---------------~~~~~~i~~~~~ 191 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF---------------QGHTDGASCIDI 191 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEE
T ss_pred CCCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee---------------ecccCceEEEEE
Confidence 1110 001123678899999995 789999999999999999988888 789999999999
Q ss_pred ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy1242 403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG 482 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g 482 (540)
+| ++++|++++.|+.|++||++. .+++..+ .|...+.+++|+|+++++++++.||.|++|+...
T Consensus 192 ~~----~~~~l~~~~~dg~i~~~d~~~-----------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 192 SN----DGTKLWTGGLDNTVRSWDLRE-----------GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp CT----TSSEEEEEETTSEEEEEETTT-----------TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CC----CCCEEEEEecCCcEEEEECCC-----------CceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99 999999999999999999876 2344444 5788899999999999999999999999998755
Q ss_pred cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 483 DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 483 ~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
.....+..|.. .|.+++|+|+|++|+++ .||.|++|+++ ++.+....|...|.++
T Consensus 256 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~ 312 (337)
T 1gxr_A 256 PDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312 (337)
T ss_dssp SCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CCeEEEcCCcc--ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEE
Confidence 55567777877 78999999999999884 68999999987 7777666788888775
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=1.7e-24 Score=220.87 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=178.3
Q ss_pred CcEEEEEccCcceEEEEcCCCCC--c-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc------Cc
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAA--S-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF------SQ 333 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~--~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~------~~ 333 (540)
++..+++++.|++|++|+..+.. . ....+|...+ ..+.+++|+.++++++.+... ..+.+.... ..
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~~~~~dg~i-~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV----TGVDWAPDSNRIVTCGTDRNA-YVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCE----EEEEEETTTTEEEEEETTSCE-EEEEEETTEEEEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcc----cEEEEeCCCCEEEEEcCCCeE-EEEECCCCeeeeeEEee
Confidence 33348999999999999987763 2 2233455333 357789999877776544332 222221110 01
Q ss_pred ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
...-.+.+++|+|+++. |++|+.|+.|++||++.++..... .....+|...|++++|+| ++++|
T Consensus 94 ~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~----~~~~l 157 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVC-----------KHIKKPIRSTVLSLDWHP----NSVLL 157 (372)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEE-----------EEECTTCCSCEEEEEECT----TSSEE
T ss_pred cCCCceeEEEECCCCCE-EEEEeCCCEEEEEEecCCCcceee-----------eeeecccCCCeeEEEEcC----CCCEE
Confidence 11223788899999995 789999999999999987632211 011157899999999999 99999
Q ss_pred EEEeCCCcEEEEEcCCCccccc------C-CCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 414 ASGSADCTVLLWHWNARTQSIV------G-ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~------~-~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
++|+.|+.|++||++....... + ....++++..+.+|...|.+++|+|++.+|++++.||.|++|+. +++.+
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999999999753211000 0 01124677888899999999999999999999999999999976 88999
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g 524 (540)
..+..|.. +|.+++|+|+|++|+++.|+.|++|+++.
T Consensus 238 ~~~~~~~~--~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 238 ATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEccCCC--CeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 99998887 78999999999999999999999999865
No 32
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.93 E-value=2.8e-24 Score=236.49 Aligned_cols=231 Identities=12% Similarity=0.010 Sum_probs=174.2
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---cC--
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---FS-- 332 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~---~~-- 332 (540)
.+.+++..+++++ +.+|++|+..++... ...+|.+.| ..+.|++|+.++++|+.+... ..+.+... ..
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v----~~~~~spdg~~lasg~~d~~v-~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQT----TVAKTSPSGYYCASGDVHGNV-RIWDTTQTTHILKTT 98 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEESSSTTCCEEEE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCce----EEEEECCCCcEEEEEeCCCCE-EEeECCCCcceeeEe
Confidence 3444444588877 569999999765433 344676544 357899999998888654332 33332110 00
Q ss_pred -cceeeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 333 -QKLRVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 333 -~~~~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
......+.+++|+|+|+. |++++.+ +.|++|| +++....+ .+|.+.|++++|+|
T Consensus 99 ~~~~~~~v~~v~fs~dg~~-l~~~~~~~~~~~~v~~wd--~~~~~~~l---------------~gh~~~v~~v~f~p--- 157 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFD--TGTSNGNL---------------TGQARAMNSVDFKP--- 157 (611)
T ss_dssp EECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETT--TCCBCBCC---------------CCCSSCEEEEEECS---
T ss_pred ecccCCceEEEEECCCCCE-EEEEECCCCceeEEEEee--CCCCccee---------------cCCCCCceEEEECC---
Confidence 011224789999999996 4555544 3677777 45555555 79999999999999
Q ss_pred CCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 408 TADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 408 ~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
++. .|++|+.|++|++||... .++...+.+|...|.+++|+|+|++|++|+.|++|++|+. +++.+
T Consensus 158 -~~~~~l~s~s~D~~v~lwd~~~-----------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 158 -SRPFRIISGSDDNTVAIFEGPP-----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp -SSSCEEEEEETTSCEEEEETTT-----------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred -CCCeEEEEEeCCCeEEEEECCC-----------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 776 699999999999999765 3567889999999999999999999999999999999985 88888
Q ss_pred EEec-------CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee
Q psy1242 486 RSLD-------PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE 530 (540)
Q Consensus 486 ~~l~-------~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~ 530 (540)
..+. +|.+ .|.+++|+|+|++|++ +.|++|++||+. ++.+..+
T Consensus 226 ~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeeccccccccccCC--CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 8884 6777 7899999999999998 568999999987 6555443
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-24 Score=216.27 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=161.5
Q ss_pred ceeeecCCcEEEEEccCcceEEEEcCCCCC--------cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242 256 TYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL 327 (540)
Q Consensus 256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--------~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~ 327 (540)
..+.+.+++..+++++.|++|++|+..... .....+|.+.| ..+.|++|+.++++|+.+... ..+.+
T Consensus 62 ~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V----~~v~~sp~g~~las~s~D~~v-~iwd~ 136 (330)
T 2hes_X 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV----KGVAWSNDGYYLATCSRDKSV-WIWET 136 (330)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE----EEEEECTTSCEEEEEETTSCE-EEEEC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE----EEEEECCCCCEEEEEeCCCEE-EEEec
Confidence 334444455559999999999999985321 11123465443 357899999888877654433 22322
Q ss_pred CCC---cC-----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC--eEEEEEecccceeeeeeEEEeeccCcce
Q psy1242 328 GDN---FS-----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA--RIVQIIFGHYGVVTSRIVQIIFGHYGVV 397 (540)
Q Consensus 328 ~~~---~~-----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g--~~~~~l~~~~~~v~~~~~~~l~~h~~~V 397 (540)
... .. ......+.+++|+|+++. |++|+.|++|++||..++ +++..+ .+|.+.|
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~iW~~~~~~~~~~~~~---------------~~h~~~v 200 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDYDDDWECVAVL---------------NGHEGTV 200 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCeeEEEEc---------------cCCCCcE
Confidence 110 00 011223788999999995 799999999999998766 455555 8999999
Q ss_pred EEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q psy1242 398 TCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGSQLGP 474 (540)
Q Consensus 398 t~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~ 474 (540)
.+++|+| + +..|++|+.|++|++||+....... .....+...+.+ |...|.+++|++++ +|++++.||+
T Consensus 201 ~~~~~~~----~~~~~~l~s~s~D~~v~iw~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~ 272 (330)
T 2hes_X 201 WSSDFDK----TEGVFRLCSGSDDSTVRVWKYMGDDEDD---QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV 272 (330)
T ss_dssp EEEEECC----SSSSCEEEEEETTSCEEEEEEEEECTTS---CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred EEEEecC----CCCeeEEEEEeCCCeEEEEEecCCCccc---cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence 9999999 6 6789999999999999986532100 000123455555 99999999999765 8999999999
Q ss_pred EEEEeC-CCc--EEEE-ecCCCCCCCceEEEEee--CCCEEEE-ecCCeEEEEecCC
Q psy1242 475 VLVHTT-FGD--LLRS-LDPPSGFASPESVVMSR--EGVIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 475 v~iw~~-~g~--~~~~-l~~~~~~~~v~~l~fsp--dg~~l~s-~~dg~I~lw~~~g 524 (540)
|++|+. +++ .+.. +.+|... .|.+++|+| ++++|++ +.||+|++|+++.
T Consensus 273 v~iw~~~~~~~~~~~~~~~~h~~~-~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRALCHGVY-EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEESCTTTTS-CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccccccccc-eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999976 553 3333 3455431 589999999 6888887 5789999999863
No 34
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=6.7e-24 Score=236.79 Aligned_cols=222 Identities=22% Similarity=0.249 Sum_probs=170.7
Q ss_pred eecccceeeecCC-cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 251 HVTANTYVTLHMP-SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 251 ~~~~~~~~~~~~~-~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
|...++.+.++++ ..+++|+|.|++|++|+........ ....+.+.+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------------------------~~~~~~~~~ 428 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------------------------GVAQRRLTG 428 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------------------------CEEEEEEEC
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------------------------ccccceecC
Confidence 3333344444432 3469999999999999975421000 001111222
Q ss_pred CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242 330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA 409 (540)
Q Consensus 330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d 409 (540)
+.. .+.+++|+|++++ |++|+.|++|+|||+.+++.+..+ .+|.+.|++++|+| +
T Consensus 429 h~~-----~v~~v~~s~~g~~-l~sgs~Dg~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~s~----~ 483 (694)
T 3dm0_A 429 HSH-----FVEDVVLSSDGQF-ALSGSWDGELRLWDLAAGVSTRRF---------------VGHTKDVLSVAFSL----D 483 (694)
T ss_dssp CSS-----CEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE---------------ECCSSCEEEEEECT----T
T ss_pred CCC-----cEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcceeEE---------------eCCCCCEEEEEEeC----C
Confidence 211 2678889999995 799999999999999999988888 89999999999999 9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL--GLVVSGSQLGPVLVHTT-FGDLLR 486 (540)
Q Consensus 410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg--~~lasgs~Dg~v~iw~~-~g~~~~ 486 (540)
+++|+||+.|++|++||....... .......+|...|.|++|+|++ ..+++|+.||+|++|+. ++++..
T Consensus 484 ~~~l~s~s~D~~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~ 555 (694)
T 3dm0_A 484 NRQIVSASRDRTIKLWNTLGECKY--------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555 (694)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEE--------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcce--------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999997542100 0011125789999999999987 58999999999999976 778889
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
.+.+|.+ .|.+++|+|+|++|+++ .||.|++||+. ++.+..+.+...|.++
T Consensus 556 ~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~ 608 (694)
T 3dm0_A 556 TLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608 (694)
T ss_dssp EECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEE
T ss_pred EEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEE
Confidence 9999988 78999999999999984 68999999987 7777777766667665
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=1.2e-23 Score=211.82 Aligned_cols=255 Identities=14% Similarity=0.129 Sum_probs=185.8
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc------cCCCCcCCCCCCCCCcccc
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI------QSPSYAETPGSPPGNLPLT 306 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~------~~~~~~~~v~~~~~~~~~s 306 (540)
.|.+.+..+.|+|+. ..+++|||.|++|++||+...... ...+|.+.| ..+.|+
T Consensus 36 GH~~~V~~v~~sp~~----------------~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V----~~~~~s 95 (340)
T 4aow_A 36 GHNGWVTQIATTPQF----------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV----SDVVIS 95 (340)
T ss_dssp CCSSCEEEEEECTTC----------------TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE----EEEEEC
T ss_pred CccCCEEEEEEeCCC----------------CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE----EEEEEC
Confidence 355566666666542 234999999999999998764421 123455333 357789
Q ss_pred CCCCeeeccCCCCCCccccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccccee
Q psy1242 307 LDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVV 382 (540)
Q Consensus 307 ~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v 382 (540)
+|+.++++++.+.... .+....... ........+..+++++.. |++|+.|+.+++||+.........
T Consensus 96 ~dg~~l~s~~~d~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~------- 166 (340)
T 4aow_A 96 SDGQFALSGSWDGTLR-LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQ------- 166 (340)
T ss_dssp TTSSEEEEEETTSEEE-EEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEEC-------
T ss_pred CCCCEEEEEcccccce-EEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEE-------
Confidence 9998888775443321 111111100 001112566677899985 799999999999998865543222
Q ss_pred eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE 462 (540)
Q Consensus 383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 462 (540)
+.+|.+.|.+++|++. .....+++++.|++|++||++. .+++..+.+|...|++++|+|+
T Consensus 167 -------~~~~~~~v~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~-----------~~~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 167 -------DESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVWNLAN-----------CKLKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp -------SSSCSSCEEEEEECSC--SSSCEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTT
T ss_pred -------eccccCcccceEEccC--CCCcEEEEEcCCCEEEEEECCC-----------CceeeEecCCCCcEEEEEECCC
Confidence 2689999999999882 1346789999999999999876 4577889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcE-EEee----------
Q psy1242 463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR-LRHE---------- 530 (540)
Q Consensus 463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~-l~~~---------- 530 (540)
+++|++|+.||+|++|+. +++.+..+..+. .|.+++|+|++.+++++.|+.|++|++++.. +..+
T Consensus 227 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 227 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK 303 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred CCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence 999999999999999976 777888887654 5899999999999999999999999998543 3322
Q ss_pred ecCCcceec
Q psy1242 531 SHNDNLQKT 539 (540)
Q Consensus 531 ~~~~~V~~v 539 (540)
.|...|++|
T Consensus 304 ~h~~~v~~l 312 (340)
T 4aow_A 304 AEPPQCTSL 312 (340)
T ss_dssp CCCCCEEEE
T ss_pred CCCCCEEEE
Confidence 256667665
No 36
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=2.8e-25 Score=223.93 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=169.0
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCc---ccCCCCcCCCCCCCCCccccC--
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTL-- 307 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~---~~~~~~~~~v~~~~~~~~~s~-- 307 (540)
.|.+.+..+.|++++.. ++|+|.|++|++||...+.. ....+|.+.|. .+.|++
T Consensus 11 ~H~~~V~~v~~s~~g~~-----------------lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~----~v~~~~~~ 69 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTR-----------------LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW----QVAWAHPM 69 (316)
T ss_dssp ---CCEEEEEECGGGCE-----------------EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE----EEEECCGG
T ss_pred cccCeEEEeeEcCCCCE-----------------EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE----EEEeCCCC
Confidence 34555666666655544 99999999999999875431 23346765543 455654
Q ss_pred CCCeeeccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEEEEEeccc
Q psy1242 308 DPILTHPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIVQIIFGHY 379 (540)
Q Consensus 308 D~~l~~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~ 379 (540)
++.++++|+.+... ..+.+... .. ....-.+.+++|+|+ +. +|++|+.|++|++||++++......
T Consensus 70 ~~~~l~s~s~D~~v-~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~---- 143 (316)
T 3bg1_A 70 YGNILASCSYDRKV-IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVK---- 143 (316)
T ss_dssp GSSCEEEEETTSCE-EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEEC----
T ss_pred CCCEEEEEECCCEE-EEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCccee----
Confidence 36666666543332 22322211 00 011223678888998 66 5799999999999999876432111
Q ss_pred ceeeeeeEEEeeccCcceEEEEeccCccCC-----------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCc
Q psy1242 380 GVVTSRIVQIIFGHYGVVTCLSRSECNITA-----------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPT 442 (540)
Q Consensus 380 ~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-----------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~ 442 (540)
..+.+|...|.+++|+| + +++|++|+.|++|++||++.... .+
T Consensus 144 --------~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------~~ 203 (316)
T 3bg1_A 144 --------KINNAHTIGCNAVSWAP----AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------WK 203 (316)
T ss_dssp --------CBTTSSSSCBCCCEECC----CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------EE
T ss_pred --------eeeccccCCcceEEEcc----ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------cc
Confidence 11268999999999998 5 46899999999999999864210 13
Q ss_pred ceEEeccCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCC----c-EEEEecCCCCCCCceEEEEeeCCCEEEE-e
Q psy1242 443 PRATLTGHEQPVTSVAISAEL----GLVVSGSQLGPVLVHTTFG----D-LLRSLDPPSGFASPESVVMSREGVIVVN-Y 512 (540)
Q Consensus 443 ~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~v~iw~~~g----~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~ 512 (540)
++..+.+|...|.+++|+|++ .+|++|+.||+|++|+... . ....+..|.. .|.+++|+|+|++|++ +
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSG 281 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS--CEEEEEECTTTCCEEEEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEc
Confidence 567788999999999999987 7899999999999997532 1 1223445565 7899999999999987 5
Q ss_pred cCCeEEEEecC
Q psy1242 513 ERGHIAAFTMN 523 (540)
Q Consensus 513 ~dg~I~lw~~~ 523 (540)
.|+.|++|+.+
T Consensus 282 ~D~~v~lw~~~ 292 (316)
T 3bg1_A 282 GDNKVTLWKES 292 (316)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCeEEEEEEC
Confidence 68999999975
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=217.59 Aligned_cols=249 Identities=14% Similarity=0.048 Sum_probs=183.5
Q ss_pred eeeecCCcE-EEEEccCcceEEEEcC----CCCCc------ccCCCCcCC-------CCCCCCCccccCCCCeeeccCCC
Q psy1242 257 YVTLHMPSV-VTVTANHQFAINRWNP----DYAAS------IQSPSYAET-------PGSPPGNLPLTLDPILTHPTSNN 318 (540)
Q Consensus 257 ~~~~~~~~~-~lvs~s~D~tv~~W~~----~~~~~------~~~~~~~~~-------v~~~~~~~~~s~D~~l~~~g~~~ 318 (540)
.+.+.+++. .+++++.|++|++|+. .++.. .....+... -......+.|++|+.++++++.+
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 333444444 5999999999999999 65541 111111100 01133467899999888777544
Q ss_pred CCCccccccCCCcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccce--------------
Q psy1242 319 NAPVPKRHLGDNFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGV-------------- 381 (540)
Q Consensus 319 ~~~~~~~~~~~~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~-------------- 381 (540)
.... .+....... ......+.+++|+|+++. |++++.|+.|++||+.+++.+..+..+...
T Consensus 130 g~i~-i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 130 GELR-LWNKTGALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp SCEE-EEETTSCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred CeEE-EEeCCCCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 3332 221111100 011223788899999995 688999999999999999988887665543
Q ss_pred -eee--------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242 382 -VTS--------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI 434 (540)
Q Consensus 382 -v~~--------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~ 434 (540)
+.+ ..+..+.+|...|++++|+| ++++|++++.|+.|++||++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~i~d~~~----- 278 (425)
T 1r5m_A 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND----TNKLLLSASDDGTLRIWHGGN----- 278 (425)
T ss_dssp CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEECSSS-----
T ss_pred eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC----CCCEEEEEcCCCEEEEEECCC-----
Confidence 211 33456678999999999999 999999999999999999876
Q ss_pred cCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-
Q psy1242 435 VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY- 512 (540)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~- 512 (540)
.+++..+.+|...|.+++|+|++ .+++++.||.|++|+. +++.+..+..|.. .|.+++|+|+|++|+++
T Consensus 279 ------~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 279 ------GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp ------BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEECTTSSEEEEEE
T ss_pred ------CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEcCCCCEEEEEE
Confidence 35678888999999999999999 9999999999999986 7888999988887 78999999999999985
Q ss_pred cCCeEEEEecC-Cc
Q psy1242 513 ERGHIAAFTMN-GN 525 (540)
Q Consensus 513 ~dg~I~lw~~~-g~ 525 (540)
.+|.|++|+++ ++
T Consensus 350 ~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 350 MDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSCEEEEECHHHH
T ss_pred CCCeEEEEECCCCc
Confidence 58999999987 55
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.92 E-value=2.3e-23 Score=210.09 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=158.1
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK 334 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~ 334 (540)
+....+.+++..++|+|.|++|++||..++... ..+.++.
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-------------------------------------~~~~~h~--- 107 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------------------------------QRFVGHK--- 107 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------------------------------EEEECCS---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-------------------------------------EEEccCC---
Confidence 344455556666999999999999998543211 0111111
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc--CCCcE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI--TADCF 412 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~--~dg~~ 412 (540)
..+.+++|+|++.. |++|+.|++|++||++ ++.+..+ .+|.+.|.+++++|... .++..
T Consensus 108 --~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~-~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 108 --SDVMSVDIDKKASM-IISGSRDKTIKVWTIK-GQCLATL---------------LGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp --SCEEEEEECTTSCE-EEEEETTSCEEEEETT-SCEEEEE---------------CCCSSCEEEEEECCC------CCE
T ss_pred --CcEEEEEEcCCCCE-EEEEeCCCeEEEEECC-CCeEEEE---------------eccCCcEEEEEEccCCCCCCCccE
Confidence 12678889999995 7999999999999997 5666666 78999999999998210 02348
Q ss_pred EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
|++|+.|++|++||++. .++...+.+|...|.+++|+|++++|++|+.||+|++|+. +++.+..+..+
T Consensus 169 l~s~~~d~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQ-----------FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp EEEEETTSCEEEEETTT-----------TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred EEEEeCCCEEEEEECCc-----------chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 99999999999999876 3567788999999999999999999999999999999976 77888888765
Q ss_pred CCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcE
Q psy1242 492 SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR 526 (540)
Q Consensus 492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~ 526 (540)
. .|.+++|+|+|.+|+++.++.+++|+++...
T Consensus 238 ~---~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~ 269 (319)
T 3frx_A 238 D---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269 (319)
T ss_dssp S---CEEEEEECSSSSEEEEEETTEEEEEEETTEE
T ss_pred C---cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCe
Confidence 4 6899999999999999888889999987443
No 39
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=2.5e-23 Score=208.50 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=166.3
Q ss_pred ccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCe
Q psy1242 232 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL 311 (540)
Q Consensus 232 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l 311 (540)
..|.+.+..+.|++++.. +++++.|++|++|+........
T Consensus 8 ~gH~~~v~~~~~~~~~~~-----------------l~~~~~dg~i~iw~~~~~~~~~----------------------- 47 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRH-----------------VATCSSDQHIKVFKLDKDTSNW----------------------- 47 (351)
T ss_dssp CCCSSCEEEEEECSSSSE-----------------EEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred cccccceeEEEEcCCCCE-----------------EEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence 345666777777776655 9999999999999975421100
Q ss_pred eeccCCCCCCccccccCCCcCcceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCC---------eEEEEEecccc
Q psy1242 312 THPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNA---------RIVQIIFGHYG 380 (540)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g---------~~~~~l~~~~~ 380 (540)
.....+..+ .-.+.+++|+| +++ +|++|+.||+|++||++++ +.+..+
T Consensus 48 ----------~~~~~~~~~-----~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~----- 106 (351)
T 3f3f_A 48 ----------ELSDSWRAH-----DSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL----- 106 (351)
T ss_dssp ----------EEEEEEECC-----SSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-----
T ss_pred ----------eecceeccC-----CCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeee-----
Confidence 000111111 11267888898 588 4799999999999999877 344455
Q ss_pred eeeeeeEEEeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccC----------------------
Q psy1242 381 VVTSRIVQIIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVG---------------------- 436 (540)
Q Consensus 381 ~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~---------------------- 436 (540)
.+|.+.|++++|+| + +.+|++|+.|++|++||++........
T Consensus 107 ----------~~~~~~v~~~~~~~----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 107 ----------NDSKGSLYSVKFAP----AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp ----------CCCSSCEEEEEECC----GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ----------cccCCceeEEEEcC----CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 78999999999999 8 999999999999999998754311000
Q ss_pred ---------C----------------CCCC--cceEEeccCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeC-CC--
Q psy1242 437 ---------E----------------TDTP--TPRATLTGHEQPVTSVAISAEL----GLVVSGSQLGPVLVHTT-FG-- 482 (540)
Q Consensus 437 ---------~----------------~~~~--~~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~v~iw~~-~g-- 482 (540)
. .... .++..+.+|...|++++|+|++ .+|++|+.||.|++|+. ++
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 0 0011 1256678899999999999998 89999999999999975 32
Q ss_pred --------------------------------------------cEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeE
Q psy1242 483 --------------------------------------------DLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHI 517 (540)
Q Consensus 483 --------------------------------------------~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I 517 (540)
+.+..+.+|.. .|.+++|+|+|++|++ +.||.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKV 330 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSS--CEEEEEECSSSCCEEEEETTSCE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc--cEEEEEEcCCCCEEEEecCCCcE
Confidence 66778888888 7999999999999988 568999
Q ss_pred EEEecC-CcEEEee
Q psy1242 518 AAFTMN-GNRLRHE 530 (540)
Q Consensus 518 ~lw~~~-g~~l~~~ 530 (540)
++|+++ ++.+..+
T Consensus 331 ~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 331 RLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEecCcCcchhhe
Confidence 999998 5555544
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-23 Score=207.48 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=177.9
Q ss_pred EEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC---------CCcCcce
Q psy1242 266 VTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG---------DNFSQKL 335 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~---------~~~~~~~ 335 (540)
.+++++.|++|++|+..+..... ...|.+ ....+.+++++.++++++.+.... .+.+. ....+.
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~-~~~~~~~~~~~~~~~~~~~~- 104 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGKDTMIN-GVPLFATSGEDPLYTLIGHQ- 104 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEETTSCEE-EEETTCCTTSCC-CEECCCS-
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecCCCeEE-EEEeeecCCCCcccchhhcc-
Confidence 48999999999999987654332 223432 233577899998887775443321 11111 111122
Q ss_pred eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEE
Q psy1242 336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQI 389 (540)
Q Consensus 336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~ 389 (540)
..+.++++ +++ ++++|+.|+.|++|| .++....+..|...+.+ .....
T Consensus 105 -~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 178 (313)
T 3odt_A 105 -GNVCSLSF--QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT 178 (313)
T ss_dssp -SCEEEEEE--ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE
T ss_pred -cCEEEEEe--cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE
Confidence 23566666 566 478999999999999 57777777777766632 33455
Q ss_pred eec-cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242 390 IFG-HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS 468 (540)
Q Consensus 390 l~~-h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las 468 (540)
+.. |...|++++|+| ++. +++|+.|+.|++||++. ++++..+.+|...|++++|+|++ .+++
T Consensus 179 ~~~~~~~~i~~~~~~~----~~~-~~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 241 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVD----DGH-FISCSNDGLIKLVDMHT-----------GDVLRTYEGHESFVYCIKLLPNG-DIVS 241 (313)
T ss_dssp ECSSCSSCEEEEEEEE----TTE-EEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS-CEEE
T ss_pred EeccCcccEEEEEEcC----CCe-EEEccCCCeEEEEECCc-----------hhhhhhhhcCCceEEEEEEecCC-CEEE
Confidence 555 899999999999 887 99999999999999876 46788899999999999999999 5899
Q ss_pred EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeeecCCcce
Q psy1242 469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQ 537 (540)
Q Consensus 469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~ 537 (540)
++.||.|++|+. +++++..+..|.. .|.+++|+|+|++++++.||.|++|+++ ++.+......+.+.
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 310 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKGELR 310 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---------
T ss_pred EecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhhhhhhhh
Confidence 999999999976 8899999998887 7899999999998888899999999998 55555554444443
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.6e-24 Score=224.53 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=170.5
Q ss_pred eeecC-CcEEEEEccCcceEEEEcCCC---CC---cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--
Q psy1242 258 VTLHM-PSVVTVTANHQFAINRWNPDY---AA---SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-- 328 (540)
Q Consensus 258 ~~~~~-~~~~lvs~s~D~tv~~W~~~~---~~---~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-- 328 (540)
..+.+ ++..++|++.|++|++|+... +. ......|.+.| ..+.+++++..+++++.+... ..+.+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~s~dg~i-~vwd~~~~ 143 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV----TQITMIPNFDAFAVSSKDGQI-IVLKVNHY 143 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE----EEEEECTTSSEEEEEETTSEE-EEEEEEEE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE----EEEEEeCCCCEEEEEeCCCEE-EEEEeccc
Confidence 33444 445599999999999999765 22 11112344333 357788888877776544332 222221
Q ss_pred --CC--------------cC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEE
Q psy1242 329 --DN--------------FS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQI 389 (540)
Q Consensus 329 --~~--------------~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~ 389 (540)
+. +. ....+......+++++. ++++|+.|++|++||+++++.+..+
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-------------- 208 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQII-------------- 208 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEE--------------
Confidence 00 00 11112222223667888 5799999999999999999998888
Q ss_pred eec--cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcC----C
Q psy1242 390 IFG--HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISA----E 462 (540)
Q Consensus 390 l~~--h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~sp----d 462 (540)
.+ |.+.|++++|+| ++.+|++|+.||+|++||++. ++++..+. +|...|++++|+| +
T Consensus 209 -~~~~h~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 209 -ENSPRHGAVSSICIDE----ECCVLILGTTRGIIDIWDIRF-----------NVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp -ECCGGGCCEEEEEECT----TSCEEEEEETTSCEEEEETTT-----------TEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred -ccCCCCCceEEEEECC----CCCEEEEEcCCCeEEEEEcCC-----------ccEEEEEecCCCCceEEEEeccccCCC
Confidence 55 889999999999 999999999999999999876 45677775 7888999996665 5
Q ss_pred CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC------------------------CCceEEEEeeCCCEEEEe-cCCe
Q psy1242 463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF------------------------ASPESVVMSREGVIVVNY-ERGH 516 (540)
Q Consensus 463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~------------------------~~v~~l~fspdg~~l~s~-~dg~ 516 (540)
+.+|++|+.||+|++|+. +++++..+.+|... ..|.+++|+ ++++|+++ .|+.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 779999999999999987 78888888755321 147889999 77888885 5899
Q ss_pred EEEEecC-CcEEEee
Q psy1242 517 IAAFTMN-GNRLRHE 530 (540)
Q Consensus 517 I~lw~~~-g~~l~~~ 530 (540)
|++|++. ++.+..+
T Consensus 352 i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 352 IVMFSLNELSSSKAV 366 (437)
T ss_dssp EEEEETTCGGGCEEE
T ss_pred EEEEECCCcccceEE
Confidence 9999987 5544444
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.92 E-value=1.4e-23 Score=213.66 Aligned_cols=228 Identities=15% Similarity=0.184 Sum_probs=164.4
Q ss_pred ceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----
Q psy1242 256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---- 330 (540)
Q Consensus 256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~---- 330 (540)
....+.++...++|++.|++|++||..++.... ..+|.+.| ..+.|++|+..+++++.+... ..+.+...
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v----~~v~~sp~~~~l~s~~~d~~i-~~wd~~~~~~~~ 154 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV----YSVAFSPDNRQILSAGAEREI-KLWNILGECKFS 154 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCE----EEEEECSSTTEEEEEETTSCE-EEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcE----EEEEECCCCCEEEEEcCCCEE-EEEeccCCceee
Confidence 334444555569999999999999998765433 33566444 357899999877776544333 22222110
Q ss_pred --cCcceeeEEEEEEEecCC----------CEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242 331 --FSQKLRVRHNCFVTTVDS----------RFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398 (540)
Q Consensus 331 --~~~~~~v~~~~~~~spdg----------~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt 398 (540)
......-.+.+++|+|++ . ++++|+.|++|++||. .++....+ .+|...|+
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~---------------~~h~~~v~ 217 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNT-NFQIRYTF---------------KAHESNVN 217 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEET-TTEEEEEE---------------ECCSSCEE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcC-CCceeEEE---------------cCccccce
Confidence 001122237888889987 5 5799999999999995 45666666 78999999
Q ss_pred EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242 399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH 478 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw 478 (540)
+++|+| +|++|++|+.|++|++||+.... .+...+ .+...|.+++|+|++.+++++ .|+.|++|
T Consensus 218 ~~~~s~----~g~~l~sgs~dg~v~iwd~~~~~----------~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 218 HLSISP----NGKYIATGGKDKKLLIWDILNLT----------YPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp EEEECT----TSSEEEEEETTCEEEEEESSCCS----------SCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred EEEECC----CCCEEEEEcCCCeEEEEECCCCc----------ccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 999999 99999999999999999985321 233333 355679999999999887655 58889999
Q ss_pred eC-CCcE--EEEec-----------CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 479 TT-FGDL--LRSLD-----------PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 479 ~~-~g~~--~~~l~-----------~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
+. +++. +..+. +|.. .|.+++|+|+|++|++| .||.|++|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 282 NLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 75 4433 22443 4444 68999999999999884 68999999975
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=9e-24 Score=217.57 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=169.6
Q ss_pred EEEEEccCcceEEEEcCCCCCcccCC---CCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCCcC------cc
Q psy1242 265 VVTVTANHQFAINRWNPDYAASIQSP---SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFS------QK 334 (540)
Q Consensus 265 ~~lvs~s~D~tv~~W~~~~~~~~~~~---~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~~~------~~ 334 (540)
..+++++.|++|++|+..+....... +|.+.| ..+.|++ ++.++++++.+.. ...+.+..... ..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAI----TGMKFNQFNTNQLFVSSIRGA-TTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBE----EEEEEETTEEEEEEEEETTTE-EEEEETTSCEEEEEECCCC
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCce----eEEEeCCCCCCEEEEEeCCCE-EEEEECCCCceEEEeccCC
Confidence 45999999999999999866543322 355333 3577888 6666666643322 22232221100 01
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FI 413 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l 413 (540)
....+.+++|+|+++. |++|+.|+.|++||+ +++.+..+ .+|.+.|++++|+| ++. +|
T Consensus 162 ~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~---------------~~h~~~v~~~~~~~----~~~~~l 220 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQM-LATGDSTGRLLLLGL-DGHEIFKE---------------KLHKAKVTHAEFNP----RCDWLM 220 (383)
T ss_dssp SSCCEEEEEEETTTTE-EEEEETTSEEEEEET-TSCEEEEE---------------ECSSSCEEEEEECS----SCTTEE
T ss_pred CCCCeEEEEECCCCCE-EEEECCCCCEEEEEC-CCCEEEEe---------------ccCCCcEEEEEECC----CCCCEE
Confidence 1123788899999995 799999999999999 47777777 78999999999999 888 99
Q ss_pred EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242 414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
++|+.|++|++||++..... ..++..+ +|...|.+++|+| ++.+|++++.||.|++|+. +++.+..+..|
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDK-------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEEETTSEEEEEEGGGCCST-------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEEeCCCEEEEEeCCCCCcc-------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 99999999999999863311 2345555 7999999999999 9999999999999999976 55555555433
Q ss_pred C-------CCC--------CceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee---cCCccee
Q psy1242 492 S-------GFA--------SPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES---HNDNLQK 538 (540)
Q Consensus 492 ~-------~~~--------~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~---~~~~V~~ 538 (540)
. ..+ .+..++|+|+|++ .++.|+.|++||+. |+.+..+. +.+.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~ 357 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL 357 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence 2 100 2233555555555 33468999999986 88888775 4455554
No 44
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.8e-23 Score=220.28 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=163.5
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-cceee
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-QKLRV 337 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-~~~~v 337 (540)
.+.+++..+||+|.|++|+ ++...+.. .+|...|. .+.|+|||..-. ..... .+-...+. .+ .-
T Consensus 22 ~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~----~V~FsPdg~~~~-----~~~~~-~~~~~~~~~~~-~~ 86 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLF----HVKEFPLEFENK-----LDFEL-AQQNGLLNSQP-VC 86 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTE----EEEEECCCCCCT-----TTTSC-CCSSCSSTTSC-SC
T ss_pred EECCCCCEEEEEcCCceee--ccccccee--cCCCccEE----EEEECCCCCcce-----EEEEe-CCCceEeecCC-CC
Confidence 3444455599999999999 65444322 35664443 467889883211 01110 01001111 11 23
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-----ceEEEEeccCccCCCcE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-----VVTCLSRSECNITADCF 412 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-----~Vt~l~~sp~~~~dg~~ 412 (540)
.+.+++|||||+. ||+++.||+|+|||.+. ++..+ . |.. .|.+++||| ||++
T Consensus 87 ~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~--~l~~l---------------~-~~~~~~~~sv~svafSP----DG~~ 143 (588)
T 2j04_A 87 YPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK--MLTNL---------------D-SKGNLSSRTYHCFEWNP----IESS 143 (588)
T ss_dssp CEEEEEECSSSSC-EEEEETTSCEEEEETTE--EEEEC---------------C-CSSCSTTTCEEEEEECS----SSSC
T ss_pred cEEEEEECCCCCE-EEEEeCCCcEEEEeCCc--eeeec---------------c-CCCccccccEEEEEEcC----CCCE
Confidence 4889999999995 79999999999999653 44444 4 554 599999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCcccccCCCCCC--cceEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE--
Q psy1242 413 IASGSADCTVLLWHWNARTQSIVGETDTP--TPRATL----TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL-- 484 (540)
Q Consensus 413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~--~~~~~l----~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~-- 484 (540)
|++|+.||+|+|||+..+... .. -.+.++ .+|.+.|.+++|+|+| +++++.|++|++|+..+..
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~------~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSEN------TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTT------CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred EEEEcCCCEEEEEECCCCccc------cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 999999999999998763210 00 025665 6788999999999999 8889999999999874432
Q ss_pred --EEEec-CCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee--ecCCcceec
Q psy1242 485 --LRSLD-PPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE--SHNDNLQKT 539 (540)
Q Consensus 485 --~~~l~-~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~--~~~~~V~~v 539 (540)
.+++. +|.. .|.+++|+ |+.||++++++|++|++++..+... .|.+.|..|
T Consensus 216 ~~~~tL~~~h~~--~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 216 PVSRMIQNASRR--KITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHII 271 (588)
T ss_dssp CCEEEEECCCSS--CCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred cceeeecccccC--cEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence 35674 6665 78999999 6899988889999999997666333 477777655
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.7e-23 Score=212.42 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=175.3
Q ss_pred CcEEEEEccCcceEEEEcCCCC-----CcccCCCCcCCCCCCCCCccccCC-CCeeeccCCCCCCccccccCCCc-----
Q psy1242 263 PSVVTVTANHQFAINRWNPDYA-----ASIQSPSYAETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKRHLGDNF----- 331 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~-----~~~~~~~~~~~v~~~~~~~~~s~D-~~l~~~g~~~~~~~~~~~~~~~~----- 331 (540)
++..+++++.|++|++|+.... .......|.+.| ..+.|+++ +.++++++.+... ..+.+....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l~s~~~dg~v-~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV----KTVKFNAKQDNVLASGGNNGEI-FIWDMNKCTESPSN 152 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC----CEEEECSSSTTBEEEECSSSCE-EBCBTTTTSSCTTT
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccce----EEEEEcCCCCCEEEEEcCCCeE-EEEECCCCcccccc
Confidence 3334999999999999999762 122334565443 35778887 7777666533322 222221110
Q ss_pred ----C----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242 332 ----S----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403 (540)
Q Consensus 332 ----~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s 403 (540)
. ......+.+++|+|++..++++|+.|+.|++||+++++.+..+..+... .+|...|++++|+
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---------SGIKQQLSVVEWH 223 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---------SCCCCCEEEEEEC
T ss_pred ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---------cccCCceEEEEEC
Confidence 0 1122246788899994446899999999999999999988888322111 2348899999999
Q ss_pred cCccCCC-cEEEEEeCCC---cEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q psy1242 404 ECNITAD-CFIASGSADC---TVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISA-ELGLVVSGSQLGPVLV 477 (540)
Q Consensus 404 p~~~~dg-~~l~sgs~Dg---tV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~sp-dg~~lasgs~Dg~v~i 477 (540)
| ++ .+|++++.|+ .|++||++... .++..+. +|...|++++|+| ++.+|++++.||.|++
T Consensus 224 ~----~~~~~l~~~~~d~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 224 P----KNSTRVATATGSDNDPSILIWDLRNAN----------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp S----SCTTEEEEEECCSSSCCCCEEETTSTT----------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred C----CCCCEEEEEECCCCCceEEEEeCCCCC----------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 9 76 6999999999 99999987632 3566777 8999999999999 8999999999999999
Q ss_pred EeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEEe-cCCeEEEEecCC
Q psy1242 478 HTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNY-ERGHIAAFTMNG 524 (540)
Q Consensus 478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s~-~dg~I~lw~~~g 524 (540)
|+. +++.+..+..|.. .|.+++|+|++ .+|+++ .|+.|++|+++.
T Consensus 290 wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred eeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 976 8899999999888 78999999999 788884 589999999873
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.91 E-value=1.3e-23 Score=218.57 Aligned_cols=246 Identities=14% Similarity=0.075 Sum_probs=177.3
Q ss_pred ceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----
Q psy1242 256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF---- 331 (540)
Q Consensus 256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~---- 331 (540)
+.+.+.+++..+++++.|+++++|+............. .......+++|+.++++|+.+... ..+.+....
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDI-KVLDSNFNLQREI 134 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCE-EEECTTSCEEEEE
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCE-EEEeCCCcceeee
Confidence 34455566666999999999999998765433322111 111223567888777777544332 222221100
Q ss_pred CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 332 ~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
-....-.+.+++|+|+++. |++|+.|++|++||+.+++.+..+ .+|.+.|++++|+| +++
T Consensus 135 ~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~~~ 194 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEA-LISSSQDMQLKIWSVKDGSNPRTL---------------IGHRATVTDIAIID----RGR 194 (420)
T ss_dssp TTSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCCCEEE---------------ECCSSCEEEEEEET----TTT
T ss_pred cccccCccEEEEECCCCCE-EEEEeCCCeEEEEeCCCCcCceEE---------------cCCCCcEEEEEEcC----CCC
Confidence 0111223788999999995 799999999999999999888887 78999999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---CCCCE---------------------EEEEEcCCCCEEE
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---HEQPV---------------------TSVAISAELGLVV 467 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V---------------------~~v~~spdg~~la 467 (540)
+|++|+.|++|++||++. ++++..+.. |...| .+++|+|++++|+
T Consensus 195 ~l~s~~~d~~v~iwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGT-----------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp EEEEEETTSCEEEEETTT-----------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred EEEEEcCCCcEEEeECCC-----------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 999999999999999876 334555543 33344 4455578999999
Q ss_pred EEeCCCcEEEEeC-CCcEEEEecC-CCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC-Cc-EEEeee--cCCcceec
Q psy1242 468 SGSQLGPVLVHTT-FGDLLRSLDP-PSGFASPESVVMSREGV-IVVN-YERGHIAAFTMN-GN-RLRHES--HNDNLQKT 539 (540)
Q Consensus 468 sgs~Dg~v~iw~~-~g~~~~~l~~-~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~-g~-~l~~~~--~~~~V~~v 539 (540)
+|+.||.|++|+. +++.+..+.. |.. .|.+++|+|++. +|++ +.||.|++||+. ++ .+..+. +...|.++
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLPSKFTC--SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCTTSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred EEcCCCeEEEEECCCCceeEEcccccCC--CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 9999999999976 6777666654 555 789999999998 7777 568999999997 43 355554 66666654
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=1.7e-23 Score=220.31 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=174.8
Q ss_pred EEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCC------cCcce
Q psy1242 266 VTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDN------FSQKL 335 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~------~~~~~ 335 (540)
++|+|+.|++|++||....... ...+|.+.|. .+.|++ |+.++++|+.+... ..+.+... ..+..
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~----~l~f~p~~~~~l~s~s~D~~v-~iwd~~~~~~~~~~~~~~~ 208 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT----GLKFNPLNTNQFYASSMEGTT-RLQDFKGNILRVFASSDTI 208 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC----EEEECSSCTTEEEEECSSSCE-EEEETTSCEEEEEECCSSC
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE----EEEEeCCCCCEEEEEeCCCEE-EEeeccCCceeEEeccCCC
Confidence 4899999999999998765532 3346775554 577885 67777766544332 33333211 01122
Q ss_pred eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEE
Q psy1242 336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIA 414 (540)
Q Consensus 336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~ 414 (540)
.+.+.+++++|+++. |++|+.||+|++||++ ++.+..+ .+|.+.|++++|+| ++. +|+
T Consensus 209 ~~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~-~~~~~~~---------------~~h~~~v~~v~~~p----~~~~~~~ 267 (435)
T 4e54_B 209 NIWFCSLDVSASSRM-VVTGDNVGNVILLNMD-GKELWNL---------------RMHKKKVTHVALNP----CCDWFLA 267 (435)
T ss_dssp SCCCCCEEEETTTTE-EEEECSSSBEEEEESS-SCBCCCS---------------BCCSSCEEEEEECT----TCSSEEE
T ss_pred CccEEEEEECCCCCE-EEEEeCCCcEeeeccC-cceeEEE---------------ecccceEEeeeecC----CCceEEE
Confidence 334678899999995 7999999999999987 4555555 78999999999999 654 788
Q ss_pred EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242 415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG 493 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~ 493 (540)
+|+.|++|+|||++.... ...+....+|...|++++|+|+|.+|++|+.||+|+||+. ++.....+..|..
T Consensus 268 s~s~d~~v~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRG--------KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp EEETTSBCCEEETTTCCS--------SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred EecCcceeeEEecccccc--------cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 999999999999876432 1223345689999999999999999999999999999976 7777777766543
Q ss_pred ----CCCceEEEEeeCCCEEEEec-------------CCeEEEEecC-CcEEEeee--cCCcceec
Q psy1242 494 ----FASPESVVMSREGVIVVNYE-------------RGHIAAFTMN-GNRLRHES--HNDNLQKT 539 (540)
Q Consensus 494 ----~~~v~~l~fspdg~~l~s~~-------------dg~I~lw~~~-g~~l~~~~--~~~~V~~v 539 (540)
...+..++|+|++.+++++. ++.|++|+.. |+.+..+. |...|.++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 11344567888887776642 3579999987 78877763 66666654
No 48
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=218.86 Aligned_cols=254 Identities=10% Similarity=0.033 Sum_probs=173.3
Q ss_pred ccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC------------cccCCCCcCC------
Q psy1242 234 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------------SIQSPSYAET------ 295 (540)
Q Consensus 234 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~------------~~~~~~~~~~------ 295 (540)
+.+.+..+.|++++.. +++++.|+.|++|+..... .....+|...
T Consensus 27 ~~~~V~~v~~s~~g~~-----------------la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 89 (447)
T 3dw8_B 27 EADIISTVEFNHSGEL-----------------LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKS 89 (447)
T ss_dssp GGGSEEEEEECSSSSE-----------------EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGT
T ss_pred ccCcEEEEEECCCCCE-----------------EEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccccc
Confidence 3456677777776655 9999999999999987654 1122244300
Q ss_pred --CCCCCCCccccCCC--CeeeccCCCCCCccccccCC------------------------------------------
Q psy1242 296 --PGSPPGNLPLTLDP--ILTHPTSNNNAPVPKRHLGD------------------------------------------ 329 (540)
Q Consensus 296 --v~~~~~~~~~s~D~--~l~~~g~~~~~~~~~~~~~~------------------------------------------ 329 (540)
+......+.|++++ ..+++++.+... ..+.+..
T Consensus 90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i-~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTI-KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp EEECCCCCEEEECCCCSSSEEEEEECSSCE-EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCcceEEEeCCCCeE-EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 01233467888886 455555433222 2222211
Q ss_pred --CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 330 --NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 330 --~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
.+.....-.+.+++|+|+++. |++| .|++|++||+++ ++.+..+.... ..+.+|.+.|++++|+|
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~p-- 236 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKP--------ANMEELTEVITAAEFHP-- 236 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCC--------SSGGGCCCCEEEEEECS--
T ss_pred eEEeccCCCcceEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeeccc--------ccccccCcceEEEEECC--
Confidence 001112223678899999995 6788 799999999984 34443321100 01268999999999999
Q ss_pred cCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------------CEEEEEEcCCCCEEEEEeCCC
Q psy1242 407 ITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------------PVTSVAISAELGLVVSGSQLG 473 (540)
Q Consensus 407 ~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------------~V~~v~~spdg~~lasgs~Dg 473 (540)
++ .+|++|+.|++|++||++..... ...+..+.+|.. .|.+++|+|++++|++++. |
T Consensus 237 --~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 237 --NSCNTFVYSSSKGTIRLCDMRASALC-------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L 306 (447)
T ss_dssp --SCTTEEEEEETTSCEEEEETTTCSSS-------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred --CCCcEEEEEeCCCeEEEEECcCCccc-------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence 87 99999999999999998863310 122577777776 9999999999999999999 9
Q ss_pred cEEEEeC-C-CcEEEEecCCCCCCC-------------ceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEE
Q psy1242 474 PVLVHTT-F-GDLLRSLDPPSGFAS-------------PESVVMSREGVIVVNY-ERGHIAAFTMN-GNRL 527 (540)
Q Consensus 474 ~v~iw~~-~-g~~~~~l~~~~~~~~-------------v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l 527 (540)
.|++|+. + ++++..+.+|..... +..++|+|+|++|+++ .||.|++|+++ ++.+
T Consensus 307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 9999976 3 777888877753111 2349999999999885 58999999998 4444
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=1.7e-23 Score=215.80 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=173.4
Q ss_pred EEEEccCcceEEEEcCCCCC-------cccCCCCcCCCCCCCCCccccCC----C---CeeeccCCCCCCccccccCCC-
Q psy1242 266 VTVTANHQFAINRWNPDYAA-------SIQSPSYAETPGSPPGNLPLTLD----P---ILTHPTSNNNAPVPKRHLGDN- 330 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~-------~~~~~~~~~~v~~~~~~~~~s~D----~---~l~~~g~~~~~~~~~~~~~~~- 330 (540)
.+++++.|++|++|+..... ......|...| ..+.|+++ + .++++++.+... ..+.+...
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~g~~~~~l~s~~~dg~i-~iw~~~~~~ 102 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL----HHVDVLQAIERDAFELCLVATTSFSGDL-LFYRITRED 102 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE----EEEEEEEEEETTTEEEEEEEEEETTSCE-EEEEEEECT
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE----EEEEEecccccCCccccEEEEEcCCCCE-EEEEccCCc
Confidence 48999999999999998765 22223454332 35778888 7 666666443332 11111110
Q ss_pred ---------cCcce----eeEEEEEEEe----cCCCEEEEEEecCCcEEEEEccC------CeEEE-----EEeccccee
Q psy1242 331 ---------FSQKL----RVRHNCFVTT----VDSRFLLACGFWDNSFRVFSTDN------ARIVQ-----IIFGHYGVV 382 (540)
Q Consensus 331 ---------~~~~~----~v~~~~~~~s----pdg~~llasgs~Dgsv~iwd~~~------g~~~~-----~l~~~~~~v 382 (540)
+.... ...+.+++|+ |+++.+|++|+.||.|++||+.+ ++.+. .+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---- 178 (397)
T 1sq9_A 103 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT---- 178 (397)
T ss_dssp TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE----
T ss_pred ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee----
Confidence 11110 2347888999 99995378999999999999987 55544 43100
Q ss_pred eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---C---CCCEEE
Q psy1242 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---H---EQPVTS 456 (540)
Q Consensus 383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h---~~~V~~ 456 (540)
+.....|...|++++|+| ++ +|++|+.|+.|++||++. .+++..+.+ | ...|.+
T Consensus 179 ----~~~~~~~~~~i~~~~~~~----~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 179 ----VESPMTPSQFATSVDISE----RG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp ----ECCSSSSCCCCCEEEECT----TS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEE
T ss_pred ----eccccCCCCCceEEEECC----Cc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccce
Confidence 000024889999999999 89 999999999999999876 457788888 9 999999
Q ss_pred EEEcCCCCEEEEEeCC---CcEEEEeC-CCcEEEEecC-------------CCCCCCceEEEEeeCCCEEEEe-cCCeEE
Q psy1242 457 VAISAELGLVVSGSQL---GPVLVHTT-FGDLLRSLDP-------------PSGFASPESVVMSREGVIVVNY-ERGHIA 518 (540)
Q Consensus 457 v~~spdg~~lasgs~D---g~v~iw~~-~g~~~~~l~~-------------~~~~~~v~~l~fspdg~~l~s~-~dg~I~ 518 (540)
++|+|++.+|++++.| |.|++|+. +++.+..+.. |.. .|.+++|+|+|++|+++ .||.|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999 99999976 8889999988 777 78999999999999985 589999
Q ss_pred EEecC-CcEEEeee
Q psy1242 519 AFTMN-GNRLRHES 531 (540)
Q Consensus 519 lw~~~-g~~l~~~~ 531 (540)
+|++. ++.+..+.
T Consensus 317 iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 317 FWDVKTKERITTLN 330 (397)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEEcCCCceeEEEe
Confidence 99997 77777775
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.6e-24 Score=219.67 Aligned_cols=237 Identities=11% Similarity=-0.005 Sum_probs=170.0
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCC--Cc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYA--AS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF---- 331 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~--~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~---- 331 (540)
.+.+++..+++++.|++|++|+..+. .. ....+|.+.| ..+.|++|+.++++++.+... ..+.+....
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s~s~d~~v-~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIV----TCVDWAPKSNRIVTCSQDRNA-YVYEKRPDGTWKQ 92 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCE----EEEEECTTTCCEEEEETTSSE-EEC------CCCC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceE----EEEEEeCCCCEEEEEeCCCeE-EEEEcCCCCceee
Confidence 34444455999999999999999865 32 2333465433 357789998777776544332 222221110
Q ss_pred ---CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE---EEEEecccceeeeeeEEEeec-cCcceEEEEecc
Q psy1242 332 ---SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI---VQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSE 404 (540)
Q Consensus 332 ---~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~---~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp 404 (540)
-....-.+.+++|+|+++. |++|+.|++|++||+++++. ...+ .+ |.+.|++++|+|
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHL---------------KRPLRSTILSLDWHP 156 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEE---------------CSSCCSCEEEEEECT
T ss_pred eeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEe---------------ecccCCCeEEEEEcC
Confidence 0111224788999999995 79999999999999998763 4555 56 999999999999
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCccccc------CCC-CCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIV------GET-DTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~------~~~-~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
++++|++|+.|++|++||++....... +.. ..++++..+ +|...|++++|+|++++|++++.||+|++
T Consensus 157 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 157 ----NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ----TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred ----CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999864221100 000 013455566 99999999999999999999999999999
Q ss_pred EeC-CCcE----EEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 478 HTT-FGDL----LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 478 w~~-~g~~----~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
|+. +++. +..+..|.. +|.+++|+|+|++|++++++.+.+|+..
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 965 5655 677888887 7899999999999999988888888875
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.91 E-value=1.8e-22 Score=201.88 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=158.2
Q ss_pred CccccCCCCeeeccCCCCCCccccccCC-CcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec
Q psy1242 302 NLPLTLDPILTHPTSNNNAPVPKRHLGD-NFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG 377 (540)
Q Consensus 302 ~~~~s~D~~l~~~g~~~~~~~~~~~~~~-~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~ 377 (540)
.+.|++|+.++++++.+... ..+.+.. ... ......+.+++|+|+++. |++|+.|+.|++||+++++.+..+
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~-- 103 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLI-KIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTL-- 103 (312)
T ss_dssp EEEECTTSSEEEEEETTSCE-EEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEE--
T ss_pred EEEECCCCCEEEEeeCCCeE-EEEeCCCcccchhhccCCCceEEEEEcCCCCE-EEEECCCCEEEEEECCCCcEEEEE--
Confidence 45677777776666433332 1111111 000 011223788899999995 799999999999999999988888
Q ss_pred ccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEE
Q psy1242 378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSV 457 (540)
Q Consensus 378 ~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v 457 (540)
.+|.+.|.+++|+| ++++|++|+.|++|++||++. ++++..+.+|...|.++
T Consensus 104 -------------~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 104 -------------KGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp -------------ECCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEE
T ss_pred -------------cCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEE
Confidence 88999999999999 999999999999999999876 45778899999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cC
Q psy1242 458 AISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HN 533 (540)
Q Consensus 458 ~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~ 533 (540)
+|+|++.++++|+.||.|++|+. +++.+..+..+... ++..++|+|+|++|++ +.|+.|++||+. ++.+..+. |.
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC-CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 99999999999999999999976 77777776544332 6889999999999988 468999999987 66666654 44
Q ss_pred Cc
Q psy1242 534 DN 535 (540)
Q Consensus 534 ~~ 535 (540)
..
T Consensus 235 ~~ 236 (312)
T 4ery_A 235 NE 236 (312)
T ss_dssp CS
T ss_pred Cc
Confidence 33
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-23 Score=226.97 Aligned_cols=226 Identities=10% Similarity=-0.013 Sum_probs=158.9
Q ss_pred cEEEEEccCcceEEEEcCCCCCcc------------cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASI------------QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN- 330 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~------------~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~- 330 (540)
..++||+|.|++|++|++..+... ...+|.. ...++.|++++. +++|+.+.. ...+.+...
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~----~v~sv~~s~~~~-lasgs~Dgt-V~lWD~~~~~ 298 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS----LITTFDFLSPTT-VVCGFKNGF-VAEFDLTDPE 298 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT----CEEEEEESSSSE-EEEEETTSE-EEEEETTBCS
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC----CEEEEEecCCCe-EEEEeCCCE-EEEEECCCCC
Confidence 457999999999999999765322 1112332 223566777664 445543322 233333211
Q ss_pred -----c-CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc--ceEEEEe
Q psy1242 331 -----F-SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG--VVTCLSR 402 (540)
Q Consensus 331 -----~-~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~--~Vt~l~~ 402 (540)
+ .+...|...+++++++|..+||+|+.|++|+|||++++++...+ .+|.. .|.+++|
T Consensus 299 ~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~---------------~~~~~~~~v~~v~f 363 (524)
T 2j04_B 299 VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT---------------VSRFRGSNLVPVVY 363 (524)
T ss_dssp SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE---------------EEECSCCSCCCEEE
T ss_pred CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc---------------ccccccCcccceEe
Confidence 1 12223333333678888336899999999999999988876666 55653 5889999
Q ss_pred ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q psy1242 403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF- 481 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~- 481 (540)
+| ++..+++++.|++|++||++. +.++..+.+|.+.|++|+|+|+|++|++|+.||+|++|+..
T Consensus 364 sp----~~~~l~s~~~d~tv~lwd~~~-----------~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 364 CP----QIYSYIYSDGASSLRAVPSRA-----------AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ET----TTTEEEEECSSSEEEEEETTC-----------TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CC----CcCeEEEeCCCCcEEEEECcc-----------cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99 999999999999999999876 35667888999999999999999999999999999988521
Q ss_pred ----C----------------------------------------cEEEEecCCCCCCCceEEEEeeCCC---EEEEec-
Q psy1242 482 ----G----------------------------------------DLLRSLDPPSGFASPESVVMSREGV---IVVNYE- 513 (540)
Q Consensus 482 ----g----------------------------------------~~~~~l~~~~~~~~v~~l~fspdg~---~l~s~~- 513 (540)
+ .++.++.+|.. .|.+|+|+|++. .+|+|+
T Consensus 429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~--~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI--NITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC--SCCCEEECCSTTTTTEEEEECT
T ss_pred hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc--eEEEEECCCCCCccHHHHhhcc
Confidence 1 11222333444 789999999964 888865
Q ss_pred CCeEEEEecCCcEE
Q psy1242 514 RGHIAAFTMNGNRL 527 (540)
Q Consensus 514 dg~I~lw~~~g~~l 527 (540)
+|.|+||++.|+..
T Consensus 507 ~g~vrlw~l~~~~~ 520 (524)
T 2j04_B 507 AGLLTLEYLSLEHH 520 (524)
T ss_dssp TSEEEEEECSCC--
T ss_pred CceEEEEEcccccc
Confidence 59999999987643
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=1.9e-22 Score=207.77 Aligned_cols=253 Identities=11% Similarity=0.078 Sum_probs=174.7
Q ss_pred ccceeEEEecCC-CCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC--------------CcCCCCC
Q psy1242 234 LDDVCMSLKFPS-NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS--------------YAETPGS 298 (540)
Q Consensus 234 ~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~--------------~~~~v~~ 298 (540)
+.+.+..+.|++ ++.. +++++.|++|++|+..+........ |.+.|
T Consensus 42 h~~~v~~~~~s~~~~~~-----------------l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-- 102 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRY-----------------MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV-- 102 (408)
T ss_dssp CSSCEEEEEECTTTCCE-----------------EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE--
T ss_pred cCCcEEEEEEecCCCCE-----------------EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE--
Confidence 455566666666 5544 9999999999999998765433321 43222
Q ss_pred CCCCccccC-CCCeeeccCCCCCCccccccCCCcC---cceeeEEEEEEEecCCC--EEEEEEecCCcEEEEEccCCeEE
Q psy1242 299 PPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFS---QKLRVRHNCFVTTVDSR--FLLACGFWDNSFRVFSTDNARIV 372 (540)
Q Consensus 299 ~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~spdg~--~llasgs~Dgsv~iwd~~~g~~~ 372 (540)
..+.|++ ++.++++++.+.. ...+.+..... ......+.++++++.+. .++++|+.|+.|++||+++++.+
T Consensus 103 --~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 103 --ETVQWYPHDTGMFTSSSFDKT-LKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp --EEEEECTTCTTCEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred --EEEEEccCCCcEEEEEeCCCe-EEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 3567777 6656665543322 22222221100 00111256677777433 15799999999999999999888
Q ss_pred EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccC-----CCCCCcceEE
Q psy1242 373 QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVG-----ETDTPTPRAT 446 (540)
Q Consensus 373 ~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~-----~~~~~~~~~~ 446 (540)
..+ .+|.+.|++++|+| ++. .|++|+.||.|++||++........ ..........
T Consensus 180 ~~~---------------~~~~~~v~~~~~~~----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 180 HIL---------------QGHRQEILAVSWSP----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEE---------------CCCCSCEEEEEECS----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred eee---------------cCCCCcEEEEEECC----CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 887 78999999999999 787 5899999999999999764311100 0001112223
Q ss_pred eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C--------------------------------------------
Q psy1242 447 LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F-------------------------------------------- 481 (540)
Q Consensus 447 l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~-------------------------------------------- 481 (540)
..+|...|.+++|+|++.+|++++.||.|++|+. +
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 3679999999999999999999999999999964 2
Q ss_pred ---CcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEe
Q psy1242 482 ---GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRH 529 (540)
Q Consensus 482 ---g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~ 529 (540)
++.+..+.+|.. .|.+++|+|+|++|+++ .||.|++|+++ ++.+..
T Consensus 321 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 321 VYSGEQITMLKGHYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TTTCCEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred CcCCcceeeeccCCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 355677777877 78999999999999985 68999999998 555443
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=3.6e-23 Score=213.34 Aligned_cols=225 Identities=10% Similarity=0.002 Sum_probs=171.4
Q ss_pred EEEEEccCcceEEEEcCCCCCc------ccCCCCcCCC-CCCCCCcccc----CCCCe-eeccCCCCCCccccccCC---
Q psy1242 265 VVTVTANHQFAINRWNPDYAAS------IQSPSYAETP-GSPPGNLPLT----LDPIL-THPTSNNNAPVPKRHLGD--- 329 (540)
Q Consensus 265 ~~lvs~s~D~tv~~W~~~~~~~------~~~~~~~~~v-~~~~~~~~~s----~D~~l-~~~g~~~~~~~~~~~~~~--- 329 (540)
..+++++.|++|++|+...... .....|.... ......+.++ +++.. +++++.+... ..+.+..
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~ 160 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT-YIWKFHPFAD 160 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE-EEEEEESSSS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE-EEEeCCcccc
Confidence 6799999999999999876553 2222342000 1223357788 88877 6666443332 1221111
Q ss_pred -----CcC--------------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEe
Q psy1242 330 -----NFS--------------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII 390 (540)
Q Consensus 330 -----~~~--------------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l 390 (540)
... ......+.+++|+|++ . +++|+.|+.|++||+++++.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~~--------------- 223 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IATGFNNGTVQISELSTLRPLYNF--------------- 223 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EEEECTTSEEEEEETTTTEEEEEE---------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EEEEeCCCcEEEEECCCCceeEEE---------------
Confidence 100 1112336788999999 4 799999999999999999988888
Q ss_pred ec---c---CcceEEEEeccCccCCCcEEEEEeCC---CcEEEEEcCCCcccccCCCCCCcceEEecc------------
Q psy1242 391 FG---H---YGVVTCLSRSECNITADCFIASGSAD---CTVLLWHWNARTQSIVGETDTPTPRATLTG------------ 449 (540)
Q Consensus 391 ~~---h---~~~Vt~l~~sp~~~~dg~~l~sgs~D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~------------ 449 (540)
.+ | ...|++++|+| ++++|++++.| +.|++||++. .+++..+.+
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~----~~~~l~~~~~d~~~g~i~i~d~~~-----------~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSP----QGSLLAIAHDSNSFGCITLYETEF-----------GERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp ECCC---CCCCCEEEEEECS----STTEEEEEEEETTEEEEEEEETTT-----------CCEEEEECBC--------CCB
T ss_pred eccccccccCCccceEEECC----CCCEEEEEecCCCCceEEEEECCC-----------CcccceeccCccccccccccc
Confidence 66 8 89999999999 99999999999 9999999876 456778888
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec------CC---------------CCCCCceEEEEeeCC
Q psy1242 450 -HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD------PP---------------SGFASPESVVMSREG 506 (540)
Q Consensus 450 -h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~------~~---------------~~~~~v~~l~fspdg 506 (540)
|...|.+++|+|++++|++++.||.|++|+. +++.+..+. .| .. .|.+++|+|+|
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~~~~~g 366 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVKFLKKG 366 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEEEECTT
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC--ceeEEEecccc
Confidence 9999999999999999999999999999976 788899998 66 66 79999999998
Q ss_pred ----------CEEEE-ecCCeEEEEecCC
Q psy1242 507 ----------VIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 507 ----------~~l~s-~~dg~I~lw~~~g 524 (540)
++|++ +.||.|++|++++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccceEEEecCCCcEEEEEcCC
Confidence 67777 5699999999863
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.91 E-value=1.7e-22 Score=213.54 Aligned_cols=248 Identities=15% Similarity=0.157 Sum_probs=183.7
Q ss_pred cEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCccee
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLR 336 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~ 336 (540)
...++|++.|++|++||..++.... ..+|.+.|. .+.+++++.++ +|+.+.. ...+.+.. ...+...
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~----~l~~~~~~~l~-s~s~dg~-i~vwd~~~~~~~~~~~~h~~~ 205 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW----ALKYAHGGILV-SGSTDRT-VRVWDIKKGCCTHVFEGHNST 205 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEECSTTEEE-EEETTSC-EEEEETTTTEEEEEECCCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE----EEEEcCCCEEE-EEeCCCC-EEEEECCCCcEEEEECCCCCc
Confidence 3468999999999999988766433 335664443 56677777444 4433222 22222221 1112223
Q ss_pred eEEEEEEEe--cCCCEEEEEEecCCcEEEEEccCCeE-----------------------EEEEecccceeee-------
Q psy1242 337 VRHNCFVTT--VDSRFLLACGFWDNSFRVFSTDNARI-----------------------VQIIFGHYGVVTS------- 384 (540)
Q Consensus 337 v~~~~~~~s--pdg~~llasgs~Dgsv~iwd~~~g~~-----------------------~~~l~~~~~~v~~------- 384 (540)
+.+++++ ++++ ++++|+.|++|++||+.+++. +..+.+|...+.+
T Consensus 206 --v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (464)
T 3v7d_B 206 --VRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 282 (464)
T ss_dssp --EEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTE
T ss_pred --cEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCE
Confidence 4555555 5666 579999999999999987652 4455566554432
Q ss_pred ------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE
Q psy1242 385 ------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT 446 (540)
Q Consensus 385 ------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~ 446 (540)
+.+..+.+|.+.|++++|+| ++++|++|+.|++|++||+++ ++++..
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~vwd~~~-----------~~~~~~ 347 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH----ERKRCISASMDTTIRIWDLEN-----------GELMYT 347 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEEETTT-----------TEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-----------CcEEEE
Confidence 56677889999999999999 999999999999999999876 467889
Q ss_pred eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-C
Q psy1242 447 LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-G 524 (540)
Q Consensus 447 l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g 524 (540)
+.+|...|.+++++ +.++++|+.||+|++|+. ++....... +.. .+..++|++++++|+++++|.|++|+++ |
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTN--LSAITTFYVSDNILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTT--CCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCC--CccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence 99999999999997 579999999999999977 555555553 333 5688999999999999889999999987 8
Q ss_pred cEEEee--ecCCcceecC
Q psy1242 525 NRLRHE--SHNDNLQKTA 540 (540)
Q Consensus 525 ~~l~~~--~~~~~V~~va 540 (540)
+.+... .+.+.|.+|+
T Consensus 423 ~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVN 440 (464)
T ss_dssp CEEESCTTTTCSEEEEEE
T ss_pred cEEehhhccCCCcEEEEE
Confidence 887753 4777777763
No 56
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-24 Score=232.48 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=159.1
Q ss_pred CCcEEEEEccCcceEEEEcCCCCCcc----c-CCCCcCCCCCCCCCccccCC------CCeeeccCCCCCCccccccCCC
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYAASI----Q-SPSYAETPGSPPGNLPLTLD------PILTHPTSNNNAPVPKRHLGDN 330 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~~~~----~-~~~~~~~v~~~~~~~~~s~D------~~l~~~g~~~~~~~~~~~~~~~ 330 (540)
++...++|+|.|++|++|+..++... . ...|.+.| ..+.|+++ +.++++++.+.. ...+.+...
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V----~~v~wsp~~~~~~~~~~LAs~s~Dgt-vrlWd~~~~ 245 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV----WDLKWHEGCHAPHLVGCLSFVSQEGT-INFLEIIDN 245 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSE----EEEEECSSCCCSSSSCEEEEEETTSC-EEEEECCCC
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE----EEEEECCCCCCCCCCceEEEEecCCe-EEEEEcCCC
Confidence 34556899999999999998765432 1 12233222 24567765 456666554332 233333211
Q ss_pred cC----------c-----ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccC
Q psy1242 331 FS----------Q-----KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHY 394 (540)
Q Consensus 331 ~~----------~-----~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~ 394 (540)
.. . .....+.|++|++++ .|++|+.||+|++||+++++ ....+ .+|.
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~---------------~~H~ 308 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYD---------------QVHD 308 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEE---------------ECSS
T ss_pred ccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEe---------------eccc
Confidence 00 0 011247889998865 47999999999999998764 33445 7899
Q ss_pred cceEEE--EeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEE
Q psy1242 395 GVVTCL--SRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSG 469 (540)
Q Consensus 395 ~~Vt~l--~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasg 469 (540)
+.|++| +|+| +| .+|+|||.|++|+|||++. +++...+.+|.. .|.+++|+|+++.++++
T Consensus 309 ~~V~sv~~~~s~----~g~~~laS~S~D~tvklWD~~~-----------~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 309 SYILSVSTAYSD----FEDTVVSTVAVDGYFYIFNPKD-----------IATTKTTVSRFRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp SCEEEEEEECCT----TSCCEEEEEETTSEEEEECGGG-----------HHHHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred ccEEEEEEEcCC----CCCeEEEEeccCCeEEEEECCC-----------CCcccccccccccCcccceEeCCCcCeEEEe
Confidence 999999 5677 77 8999999999999999876 345566667754 58899999999999999
Q ss_pred eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEE
Q psy1242 470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRL 527 (540)
Q Consensus 470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l 527 (540)
+.|++|++|+. ++.++.++.+|.+ .|.+|+|+|+|++|++ +.|++|++|++.++.+
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~ 431 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARRLL 431 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred CCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence 99999999975 7777788888988 8899999999999988 5689999999876543
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-22 Score=203.54 Aligned_cols=231 Identities=12% Similarity=0.132 Sum_probs=179.4
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC-----CCCccccccCC
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN-----NAPVPKRHLGD 329 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~-----~~~~~~~~~~~ 329 (540)
++.+.+.+++..+++++.|++|++|+..++.......+.. ....+.+++++..++++... .. ...+.+..
T Consensus 77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~~~~g~-i~~~d~~~ 151 (369)
T 3zwl_B 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----PVKRVEFSPCGNYFLAILDNVMKNPGS-INIYEIER 151 (369)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSSEEEEEECCBTTBCCE-EEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC----CeEEEEEccCCCEEEEecCCccCCCCE-EEEEEecC
Confidence 4444555566679999999999999998776554444432 23357788998777765433 11 11111110
Q ss_pred C-----------------cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEee
Q psy1242 330 N-----------------FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIF 391 (540)
Q Consensus 330 ~-----------------~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~ 391 (540)
. ..+.....+.+++|+|+++. +++|+.||.|++||+.+ ++.+..+ .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~---------------~ 215 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSI---------------D 215 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEE---------------E
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEE---------------e
Confidence 0 00000014788899999995 78999999999999998 6777777 7
Q ss_pred ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 471 (540)
+|...|++++|+| ++.+|++++.|+.|++||++. .+++..+. +...+.+++|+|+++++++++.
T Consensus 216 ~~~~~v~~~~~~~----~~~~l~~~~~d~~i~v~d~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 216 LHEKSISDMQFSP----DLTYFITSSRDTNSFLVDVST-----------LQVLKKYE-TDCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------CCEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred cCCCceeEEEECC----CCCEEEEecCCceEEEEECCC-----------Cceeeeec-CCCCceeEEecCCCceEEEeec
Confidence 8999999999999 999999999999999999876 34555555 7888999999999999999999
Q ss_pred CC--------------cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC
Q psy1242 472 LG--------------PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG 524 (540)
Q Consensus 472 Dg--------------~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g 524 (540)
++ .+++|+. +++.+..+.+|.. .|.+++|+|+|++|+++ .||.|++|+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CC-------------CEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CCCceEEEEecCCCcceeEEEecCCCcchhheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 88 7889976 8889999999988 78999999999999985 689999999883
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-22 Score=208.23 Aligned_cols=236 Identities=15% Similarity=0.084 Sum_probs=176.6
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC-CcCCC-----------CCCCCCccccCCCCeeeccCCCCCCc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETP-----------GSPPGNLPLTLDPILTHPTSNNNAPV 322 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~-~~~~v-----------~~~~~~~~~s~D~~l~~~g~~~~~~~ 322 (540)
+....+.++...+++++.|+.|++|+..++....... +.... ......+.+++++.+++++.+ ...
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~i 229 (425)
T 1r5m_A 152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK--GAI 229 (425)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--GCE
T ss_pred EEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--CeE
Confidence 3344455555568999999999999997655333222 21110 001345677788776665422 111
Q ss_pred cccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242 323 PKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398 (540)
Q Consensus 323 ~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt 398 (540)
..+.+..... ....-.+.+++|+|+++. |++|+.|+.|++||+.+++.+..+ .+|...|.
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~---------------~~~~~~i~ 293 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCF---------------YGHSQSIV 293 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEECSSSBSCSEEE---------------CCCSSCEE
T ss_pred EEEEcCCCceeeeeccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCccceEe---------------cCCCccEE
Confidence 2222111000 011223688899999995 789999999999999998888777 78999999
Q ss_pred EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242 399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH 478 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw 478 (540)
+++|+| ++ .+++++.|+.|++||++. .+++..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 294 ~~~~~~----~~-~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 294 SASWVG----DD-KVISCSMDGSVRLWSLKQ-----------NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp EEEEET----TT-EEEEEETTSEEEEEETTT-----------TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEECC----CC-EEEEEeCCCcEEEEECCC-----------CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence 999999 88 999999999999999876 45778888999999999999999999999999999999
Q ss_pred eC-CCc--------------------EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242 479 TT-FGD--------------------LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 479 ~~-~g~--------------------~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g 524 (540)
+. +++ .+..+..|.....|.+++|+|+|++|++ +.||.|++|+++|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 76 566 7888988854225899999999999987 5689999999876
No 59
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=2.2e-22 Score=211.57 Aligned_cols=236 Identities=14% Similarity=0.084 Sum_probs=175.2
Q ss_pred cceeeecCC-cEEEEEccCcceEEEEcCCCC----------C-cccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCC
Q psy1242 255 NTYVTLHMP-SVVTVTANHQFAINRWNPDYA----------A-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP 321 (540)
Q Consensus 255 ~~~~~~~~~-~~~lvs~s~D~tv~~W~~~~~----------~-~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~ 321 (540)
++...+.+. ..++++++.|++|++|+.... . .....+|... ...+.|++++. ++++|+.+...
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE----GYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC----CCCEEECTTSTTEEEEECTTSCE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC----eEEEEeCCCCCCeEEEEeCCCeE
Confidence 333444443 567999999999999998651 1 1112245433 34678888876 66666433332
Q ss_pred ccccccCCCc-----------CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeE
Q psy1242 322 VPKRHLGDNF-----------SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIV 387 (540)
Q Consensus 322 ~~~~~~~~~~-----------~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~ 387 (540)
..+.+.... -......+.+++|+|++..+|++|+.||.|++||++++ +.+..+
T Consensus 207 -~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~------------ 273 (430)
T 2xyi_A 207 -CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV------------ 273 (430)
T ss_dssp -EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE------------
T ss_pred -EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe------------
Confidence 222222200 00112237889999955557899999999999999977 455555
Q ss_pred EEeeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-E
Q psy1242 388 QIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-L 465 (540)
Q Consensus 388 ~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~ 465 (540)
.+|...|++++|+| ++. .|++|+.||+|++||++.. ..++..+.+|...|++++|+|+++ +
T Consensus 274 ---~~~~~~v~~i~~~p----~~~~~l~tg~~dg~v~vwd~~~~----------~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 274 ---DAHTAEVNCLSFNP----YSEFILATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp ---ECCSSCEEEEEECS----SCTTEEEEEETTSEEEEEETTCT----------TSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred ---ecCCCCeEEEEeCC----CCCCEEEEEeCCCeEEEEeCCCC----------CCCeEEeecCCCCEEEEEECCCCCCE
Confidence 78999999999999 776 7899999999999998752 246788899999999999999985 7
Q ss_pred EEEEeCCCcEEEEeCCC---------------cEEEEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecCCcE
Q psy1242 466 VVSGSQLGPVLVHTTFG---------------DLLRSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMNGNR 526 (540)
Q Consensus 466 lasgs~Dg~v~iw~~~g---------------~~~~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g~~ 526 (540)
+++++.||.|+||+... +++..+.+|.. .|.+++|+|++. +|++ +.||.|++|+++...
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 99999999999997632 77888888887 789999999999 7776 568999999987443
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.90 E-value=2.6e-23 Score=215.01 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=169.0
Q ss_pred CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-Ccc---eeeEEEEEEEecCCCEEEEEEecCCcEEEEE
Q psy1242 290 PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQK---LRVRHNCFVTTVDSRFLLACGFWDNSFRVFS 365 (540)
Q Consensus 290 ~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~spdg~~llasgs~Dgsv~iwd 365 (540)
.+|.+.|. .+.|++|+.++++|+.+... ..+.+.... ... ..-.+.+++|+|+|++ |++|+.|+.+++|+
T Consensus 63 ~gH~~~V~----~~~~sp~~~~l~s~s~D~~v-~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~-las~~~d~~v~iw~ 136 (380)
T 3iz6_a 63 QGHSGKVY----SLDWTPEKNWIVSASQDGRL-IVWNALTSQKTHAIKLHCPWVMECAFAPNGQS-VACGGLDSACSIFN 136 (380)
T ss_dssp CCCSSCEE----EEEECTTSSCEEEEETTSEE-EEEETTTTEEEEEEECCCTTCCCCEECTTSSE-EEECCSSSCCEEEE
T ss_pred cccccEEE----EEEEcCCCCEEEEEeCCCeE-EEEECCCCccceEEecCCCCEEEEEECCCCCE-EEEeeCCCcEEEEE
Confidence 35554443 56788888777777544332 222221110 000 0112567789999995 79999999999999
Q ss_pred ccCCe-------EEEEEecccceeee----------------------------eeEEEe-----eccCcceEEEEeccC
Q psy1242 366 TDNAR-------IVQIIFGHYGVVTS----------------------------RIVQII-----FGHYGVVTCLSRSEC 405 (540)
Q Consensus 366 ~~~g~-------~~~~l~~~~~~v~~----------------------------~~~~~l-----~~h~~~Vt~l~~sp~ 405 (540)
+.+.. ....+.+|.+.+.+ +.+..+ .+|...|.++++++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 86432 22344555544321 233334 579999999999873
Q ss_pred ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE
Q psy1242 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL 484 (540)
Q Consensus 406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~ 484 (540)
++.+|++|+.|++|++||++.. ..++..+.+|...|++++|+|++.+|++|+.||+|++|+. +++.
T Consensus 217 ---~~~~l~sgs~D~~v~~wd~~~~----------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 217 ---NANMFISGSCDTTVRLWDLRIT----------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp ---SCCEEEEEETTSCEEEEETTTT----------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred ---CCCEEEEEECCCeEEEEECCCC----------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 7899999999999999998742 3567889999999999999999999999999999999976 7888
Q ss_pred EEEecCCCCC-----CCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEee-----ecCCcceecC
Q psy1242 485 LRSLDPPSGF-----ASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHE-----SHNDNLQKTA 540 (540)
Q Consensus 485 ~~~l~~~~~~-----~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~-----~~~~~V~~va 540 (540)
+..+..+... ..|.+++|+|+|++|++| .||.|++||+. ++.+..+ .|.+.|+|++
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 8877654321 137899999999999986 58999999986 6766655 3888888864
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=1.4e-22 Score=208.80 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=147.4
Q ss_pred cceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeec
Q psy1242 235 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHP 314 (540)
Q Consensus 235 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~ 314 (540)
++.+..+.|+|++.. ++++|++.|++|++||+.+........|.+.| ..+.|++|+.++++
T Consensus 133 ~~~~~~v~fSpDg~~---------------la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V----~~v~fspdg~~l~s 193 (365)
T 4h5i_A 133 DDYTKLVYISREGTV---------------AAIASSKVPAIMRIIDPSDLTEKFEIETRGEV----KDLHFSTDGKVVAY 193 (365)
T ss_dssp TCCEEEEEECTTSSC---------------EEEEESCSSCEEEEEETTTTEEEEEEECSSCC----CEEEECTTSSEEEE
T ss_pred ccCEEEEEEcCCCCE---------------EEEEECCCCCEEEEeECCCCcEEEEeCCCCce----EEEEEccCCceEEe
Confidence 334556677777654 33567888999999999887766666666544 36789999998887
Q ss_pred cCCCCCCccccccCC-----CcCcceeeEEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeee
Q psy1242 315 TSNNNAPVPKRHLGD-----NFSQKLRVRHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSR 385 (540)
Q Consensus 315 g~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~ 385 (540)
+++.... ..+...+ .........+.+++|+|+++. +++++.|+ .+++|++..+......
T Consensus 194 ~s~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~---------- 261 (365)
T 4h5i_A 194 ITGSSLE-VISTVTGSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLR---------- 261 (365)
T ss_dssp ECSSCEE-EEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEE----------
T ss_pred ccceeEE-EEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceeccee----------
Confidence 7543221 1111111 011112234678889999996 67777777 5888998766542211
Q ss_pred eEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCC
Q psy1242 386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELG 464 (540)
Q Consensus 386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~ 464 (540)
...+.+|...|++++|+| +|++|++|+.|++|+|||+++ ++++.. +.+|...|++|+|||||+
T Consensus 262 -~~~~~~~~~~V~~~~~Sp----dg~~lasgs~D~~V~iwd~~~-----------~~~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 262 -SKQVTNRFKGITSMDVDM----KGELAVLASNDNSIALVKLKD-----------LSMSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp -EEEEESSCSCEEEEEECT----TSCEEEEEETTSCEEEEETTT-----------TEEEEEETTSSSSCEEEEEECTTSC
T ss_pred -eeeecCCCCCeEeEEECC----CCCceEEEcCCCEEEEEECCC-----------CcEEEEecCcccCCEEEEEECCCCC
Confidence 223478999999999999 999999999999999999876 456766 479999999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q psy1242 465 LVVSGSQLGPVLVHTT 480 (540)
Q Consensus 465 ~lasgs~Dg~v~iw~~ 480 (540)
+|||||.|++|+||+.
T Consensus 326 ~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 326 YVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEEEETTSEEEEEEC
T ss_pred EEEEEeCCCeEEEEEc
Confidence 9999999999999975
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.90 E-value=1.7e-22 Score=225.36 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=176.9
Q ss_pred eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
|...+..+.+.+++..++|+|.|++|++||..++... ...+|.+.|. .+.|++|+..+++|+.+.... .+.+..
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~----~~~~s~~~~~l~s~s~D~~i~-iwd~~~ 503 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL----SVAFSLDNRQIVSASRDRTIK-LWNTLG 503 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE----EEEECTTSSCEEEEETTSCEE-EECTTS
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE----EEEEeCCCCEEEEEeCCCEEE-EEECCC
Confidence 4444556677788889999999999999999876533 3345765443 577899998777776544332 222111
Q ss_pred C-------cCcceeeEEEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242 330 N-------FSQKLRVRHNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401 (540)
Q Consensus 330 ~-------~~~~~~v~~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~ 401 (540)
. ......-.+.|++|+|++. .++++|+.|++|++||+++++....+ .+|.+.|++++
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~v~ 568 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---------------AGHTGYVSTVA 568 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEE
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---------------cCCCCCEEEEE
Confidence 0 0011223478889999872 35899999999999999999888887 88999999999
Q ss_pred eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q psy1242 402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT- 480 (540)
Q Consensus 402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~- 480 (540)
|+| +|++|++|+.|++|++||+.. ++++..+. +...|.+++|+|++.++++++ |+.|+||+.
T Consensus 569 ~sp----dg~~l~sg~~Dg~i~iwd~~~-----------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 569 VSP----DGSLCASGGKDGVVLLWDLAE-----------GKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp ECT----TSSEEEEEETTSBCEEEETTT-----------TEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred EeC----CCCEEEEEeCCCeEEEEECCC-----------CceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 999 999999999999999999876 33455554 456799999999998887766 566999977
Q ss_pred CCcEEEEecCCCC-----------------CCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 481 FGDLLRSLDPPSG-----------------FASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 481 ~g~~~~~l~~~~~-----------------~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
+++++..+..+.. ...+.+++|+|+|++|++| .||.|++|++.
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 632 SKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 6777777654321 0136789999999999984 68999999975
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.1e-22 Score=202.41 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=139.0
Q ss_pred EEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC--CcE
Q psy1242 339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA--DCF 412 (540)
Q Consensus 339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~ 412 (540)
+.+++|+++ ++ +|++|+.||+|++||+.+++ .+..+ .+|...|++++|+| + +.+
T Consensus 58 v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~~~v~~~~~~~----~~~~~~ 117 (379)
T 3jrp_A 58 VWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVH---------------AVHSASVNSVQWAP----HEYGPL 117 (379)
T ss_dssp EEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCEEEEEECC----GGGCSE
T ss_pred EEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEeeee---------------cCCCcceEEEEeCC----CCCCCE
Confidence 678888877 78 47999999999999999887 44455 78999999999999 7 899
Q ss_pred EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEe
Q psy1242 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-------------ELGLVVSGSQLGPVLVHT 479 (540)
Q Consensus 413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-------------dg~~lasgs~Dg~v~iw~ 479 (540)
|++++.|++|++||++... ......+.+|...|.+++|+| ++.++++|+.||.|++|+
T Consensus 118 l~~~~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 118 LLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp EEEEETTSEEEEEECCTTS---------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEecCCCC---------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999987642 234556789999999999999 699999999999999996
Q ss_pred C-CC----cEEEEecCCCCCCCceEEEEeeC---CCEEEE-ecCCeEEEEecCCc----EEEee---ecCCcceec
Q psy1242 480 T-FG----DLLRSLDPPSGFASPESVVMSRE---GVIVVN-YERGHIAAFTMNGN----RLRHE---SHNDNLQKT 539 (540)
Q Consensus 480 ~-~g----~~~~~l~~~~~~~~v~~l~fspd---g~~l~s-~~dg~I~lw~~~g~----~l~~~---~~~~~V~~v 539 (540)
. ++ .++..+..|.. .|.+++|+|+ +.+|++ +.||.|++|+++.. ..... .+...|.++
T Consensus 189 ~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 262 (379)
T 3jrp_A 189 YNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262 (379)
T ss_dssp EETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE
T ss_pred ecCCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE
Confidence 5 33 35677888887 7899999999 888888 46899999998742 22222 266666655
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.90 E-value=5.3e-23 Score=216.52 Aligned_cols=245 Identities=11% Similarity=0.021 Sum_probs=167.5
Q ss_pred eecccceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 251 HVTANTYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 251 ~~~~~~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
|..+++.+.+.+ ++..++|+|.|++|++||..+........+. ........+.+++|+.++++|+.+... ..+.+.+
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~i-~~wd~~~ 240 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNVGNV-ILLNMDG 240 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSSSBE-EEEESSS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCCCcE-eeeccCc
Confidence 444556666653 5677999999999999998764432222221 122233457789999888887544333 2222211
Q ss_pred CcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 330 NFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 330 ~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
..- ....-.+.+++|+|++..++++|+.|++|+|||+++++....+. ...+|...|++++|+|
T Consensus 241 ~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~------------~~~~h~~~v~~~~~sp-- 306 (435)
T 4e54_B 241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL------------YSLPHRHPVNAACFSP-- 306 (435)
T ss_dssp CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS------------BCCBCSSCEEECCBCT--
T ss_pred ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE------------EeeeccccccceeECC--
Confidence 100 01122378889999998788999999999999998766433220 1157999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------CEEEEEEcCCCCEEEEEe----------
Q psy1242 407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------PVTSVAISAELGLVVSGS---------- 470 (540)
Q Consensus 407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------~V~~v~~spdg~~lasgs---------- 470 (540)
+|.+|++|+.|++|+|||+... .+...+.+|.. .+..+.|+|++..+++++
T Consensus 307 --dg~~l~s~~~D~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 307 --DGARLLTTDQKSEIRVYSASQW-----------DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp --TSSEEEEEESSSCEEEEESSSS-----------SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred --CCCeeEEEcCCCEEEEEECCCC-----------ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999999999998763 33444444432 223445666666665554
Q ss_pred --CCCcEEEEeC-CCcEEEEecC-CCCCCCceEE-EEeeCCCEEEEecCCeEEEEecC-CcE
Q psy1242 471 --QLGPVLVHTT-FGDLLRSLDP-PSGFASPESV-VMSREGVIVVNYERGHIAAFTMN-GNR 526 (540)
Q Consensus 471 --~Dg~v~iw~~-~g~~~~~l~~-~~~~~~v~~l-~fspdg~~l~s~~dg~I~lw~~~-g~~ 526 (540)
.++.|++|+. +|+++..+.. |.. .|.++ +|+|+|++|++|+|++|++|+++ |+.
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~--~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESS--GISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCC--CCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCC--cEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 3457999976 8888888764 444 56776 79999999999999999999987 543
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.90 E-value=8e-22 Score=198.33 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=162.1
Q ss_pred ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC----
Q psy1242 254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD---- 329 (540)
Q Consensus 254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~---- 329 (540)
.++...+.+++..+++++.|+.|++|+............. ........+++++..+++++.+... ..+.+..
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~d~~~-~~~d~~~~~~~ 163 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTI-KLWNTLGVCKY 163 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCE-EEECTTSCEEE
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCC---CCceeEEEEeecCccceeecCCCeE-EEEEeCCCceE
Confidence 3444455556666999999999999998765432222111 1111234455555555554332221 1111111
Q ss_pred ---CcCcceeeEEEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242 330 ---NFSQKLRVRHNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC 405 (540)
Q Consensus 330 ---~~~~~~~v~~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~ 405 (540)
...+.. .+.++++++++. .++++++.|++|++||+++++.+..+ .+|.+.|++++|+|
T Consensus 164 ~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---------------~~h~~~v~~~~~s~- 225 (340)
T 4aow_A 164 TVQDESHSE--WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---------------IGHTGYLNTVTVSP- 225 (340)
T ss_dssp EECSSSCSS--CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECT-
T ss_pred EEEeccccC--cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---------------cCCCCcEEEEEECC-
Confidence 111112 255666676643 25789999999999999999988888 78999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE
Q psy1242 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL 484 (540)
Q Consensus 406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~ 484 (540)
++++|++|+.|++|++||++. .+++..+.+ ...|.+++|+|++.+ ++++.|+.|++|+. ++..
T Consensus 226 ---~~~~l~s~s~Dg~i~iwd~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 226 ---DGSLCASGGKDGQAMLWDLNE-----------GKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp ---TSSEEEEEETTCEEEEEETTT-----------TEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEE
T ss_pred ---CCCEEEEEeCCCeEEEEEecc-----------CceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeE
Confidence 999999999999999999876 345666654 467999999998765 45667999999987 4555
Q ss_pred EEEec---------CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc
Q psy1242 485 LRSLD---------PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GN 525 (540)
Q Consensus 485 ~~~l~---------~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~ 525 (540)
+..+. .|.. .|.+++|+|+|++|++ +.||.|++|++. |.
T Consensus 290 ~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 55554 3444 7899999999999998 568999999986 53
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=4.8e-22 Score=198.24 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=146.6
Q ss_pred CccccCCCCeeeccCCCCCCccccccCC-------CcCcceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--
Q psy1242 302 NLPLTLDPILTHPTSNNNAPVPKRHLGD-------NFSQKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR-- 370 (540)
Q Consensus 302 ~~~~s~D~~l~~~g~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~-- 370 (540)
.+.|++|+.++++|+.+... ..+.+.. .+. ...-.+.+++|+++ ++ +|++|+.|++|+|||+++++
T Consensus 14 ~~~~s~~g~~las~s~D~~v-~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTI-KIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp EEEECTTSSEEEEEETTSCE-EEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBC
T ss_pred EEEECCCCCEEEEEeCCCEE-EEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceE
Confidence 46788999888877654433 2222211 111 11223778888764 77 58999999999999998774
Q ss_pred EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec
Q psy1242 371 IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT 448 (540)
Q Consensus 371 ~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~ 448 (540)
.+..+ .+|...|.+++|+| + |.+|++|+.|++|++||++.... .....+.
T Consensus 91 ~~~~~---------------~~h~~~v~~v~~~p----~~~g~~l~s~s~d~~v~~wd~~~~~~---------~~~~~~~ 142 (297)
T 2pm7_B 91 QIAVH---------------AVHSASVNSVQWAP----HEYGPMLLVASSDGKVSVVEFKENGT---------TSPIIID 142 (297)
T ss_dssp CCEEE---------------CCCSSCEEEEEECC----GGGCSEEEEEETTSEEEEEEBCSSSC---------BCCEEEE
T ss_pred EEEEe---------------ecCCCceeEEEeCc----CCCCcEEEEEECCCcEEEEEecCCCc---------eeeeeee
Confidence 33444 78999999999999 6 88999999999999999875321 1245678
Q ss_pred cCCCCEEEEEEcCC-------------CCEEEEEeCCCcEEEEeC-CCc----EEEEecCCCCCCCceEEEEeeCC---C
Q psy1242 449 GHEQPVTSVAISAE-------------LGLVVSGSQLGPVLVHTT-FGD----LLRSLDPPSGFASPESVVMSREG---V 507 (540)
Q Consensus 449 ~h~~~V~~v~~spd-------------g~~lasgs~Dg~v~iw~~-~g~----~~~~l~~~~~~~~v~~l~fspdg---~ 507 (540)
+|...|.+++|+|+ +++|++|+.|++|++|+. +++ +..++.+|.. .|.+++|+|++ .
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRS 220 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC--ceEEEEECCCCCCce
Confidence 99999999999997 579999999999999975 444 6678899988 78999999995 7
Q ss_pred EEEE-ecCCeEEEEecCC
Q psy1242 508 IVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 508 ~l~s-~~dg~I~lw~~~g 524 (540)
+|++ +.|++|++|+++.
T Consensus 221 ~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEEETTSCEEEEEESS
T ss_pred EEEEEECCCcEEEEEeCC
Confidence 8887 5689999999874
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6e-23 Score=212.79 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=174.8
Q ss_pred cCcceEEEEcCCCCC---cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cC---cceeeEE
Q psy1242 271 NHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FS---QKLRVRH 339 (540)
Q Consensus 271 s~D~tv~~W~~~~~~---~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~---~~~~v~~ 339 (540)
+.|++|++|+..... ......|.. ....+.|++|+.++++++.+... ..+.+... .. ....-.+
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~v-~vw~~~~~~~~~~~~~~~~~h~~~v 116 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDS----KFNDLDWSHNNKIIAGALDNGSL-ELYSTNEANNAINSMARFSNHSSSV 116 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSS----CEEEEEECSSSSCEEEEESSSCE-EEECCSSTTSCCCEEEECCCSSSCC
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCC----ceEEEEECCCCCeEEEEccCCeE-EEeecccccccccchhhccCCccce
Confidence 899999999998654 223334432 23467889999877776543222 22222220 00 0111236
Q ss_pred EEEEEecC-CCEEEEEEecCCcEEEEEccCCe------EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-Cc
Q psy1242 340 NCFVTTVD-SRFLLACGFWDNSFRVFSTDNAR------IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DC 411 (540)
Q Consensus 340 ~~~~~spd-g~~llasgs~Dgsv~iwd~~~g~------~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~ 411 (540)
.+++|+|+ ++ +|++|+.|++|++||+.+++ ....+ ..+.+|.+.|++++|+| + +.
T Consensus 117 ~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~----~~~~ 179 (416)
T 2pm9_A 117 KTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTP------------GQSMSSVDEVISLAWNQ----SLAH 179 (416)
T ss_dssp CEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCC------------CCSCCSSCCCCEEEECS----SCTT
T ss_pred EEEEEcCCCCC-EEEEEcCCCeEEEEECCCCcccccccccccc------------ccccCCCCCeeEEEeCC----CCCc
Confidence 78889998 66 58999999999999999876 22111 11157999999999999 7 78
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC------CCCEEEEEEcCCC-CEEEEEeCCC---cEEEEeC-
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH------EQPVTSVAISAEL-GLVVSGSQLG---PVLVHTT- 480 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~v~~spdg-~~lasgs~Dg---~v~iw~~- 480 (540)
+|++++.|++|++||++. .+++..+..| ...|.+++|+|++ .++++++.|+ .|++|+.
T Consensus 180 ~l~~~~~dg~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 180 VFASAGSSNFASIWDLKA-----------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEEESSSSCEEEEETTT-----------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EEEEEcCCCCEEEEECCC-----------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 999999999999999876 3456666665 7899999999997 6899999999 9999976
Q ss_pred CC-cEEEEec-CCCCCCCceEEEEee-CCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 481 FG-DLLRSLD-PPSGFASPESVVMSR-EGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 481 ~g-~~~~~l~-~~~~~~~v~~l~fsp-dg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
++ ..+..+. +|.. .|.+++|+| ++++|+++ .|+.|++|+++ ++.+..+. |.+.|.+++
T Consensus 249 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 249 NANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp STTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred CCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 43 5667777 7777 789999999 89988884 68999999987 78887775 788887653
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=1.7e-22 Score=207.94 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=169.4
Q ss_pred cccceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242 253 TANTYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF 331 (540)
Q Consensus 253 ~~~~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~ 331 (540)
..+....+.+ +...+++++.|++|++||..+........+.. .......+.+++|+..+++++.+... ..+.+....
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i-~i~d~~~~~ 196 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDSTGRL-LLLGLDGHE 196 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETTSEE-EEEETTSCE
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCCCCE-EEEECCCCE
Confidence 3344555555 56889999999999999998533222222221 11223467889999888877544332 222221110
Q ss_pred Cc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC----CeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 332 SQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN----ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 332 ~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~----g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
.. ...-.+.+++|+|+++.++++|+.|++|++||+++ +..+..+ +|.+.|++++|+|
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----------------PHEKPVNAAYFNP 260 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----------------ECSSCEEEEEECT
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----------------cCCCceEEEEEcC
Confidence 00 01123788999999995689999999999999997 4555444 6899999999998
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-----------------CCCEEEEEEcCCCCEEE
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-----------------EQPVTSVAISAELGLVV 467 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-----------------~~~V~~v~~spdg~~la 467 (540)
. ++++|++++.|++|++||++... ....+.+| ...+.+++++|++++
T Consensus 261 ~---~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 261 T---DSTKLLTTDQRNEIRVYSSYDWS-----------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp T---TSCEEEEEESSSEEEEEETTBTT-----------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred C---CCCEEEEEcCCCcEEEEECCCCc-----------cccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 4 68899999999999999987633 22333322 234556777777776
Q ss_pred EEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242 468 SGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524 (540)
Q Consensus 468 sgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g 524 (540)
+|+.||.|++|+. +++++..+.++.....+..++|+|+|++|++++|+.|++|++++
T Consensus 325 s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 7889999999986 89999999875422267788999999999998899999999874
No 69
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=7.8e-23 Score=206.15 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=176.4
Q ss_pred cEEEEEccCcceEEEEcCCCCC----cccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCcccccc-CCCcC---cc
Q psy1242 264 SVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL-GDNFS---QK 334 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~----~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~-~~~~~---~~ 334 (540)
+..+++++.|++|++|+..... ......|...+ ..+.+++++. ++++|+.+... ..+.+ ..... ..
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~dg~i-~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL----LCCNFIDNTDLQIYVGTVQGEI-LKVDLIGSPSFQALTN 97 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE----EEEEEEESSSEEEEEEETTSCE-EEECSSSSSSEEECBS
T ss_pred CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCce----EEEEECCCCCcEEEEEcCCCeE-EEEEeccCCceEeccc
Confidence 3348999999999999987655 33334454333 3577888888 67666543322 22222 11100 11
Q ss_pred --eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC---------CeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242 335 --LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN---------ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403 (540)
Q Consensus 335 --~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~---------g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s 403 (540)
..-.+.+++|+| +. ++++|+.|+.|++||+++ ++.+..+ . |.+.|.+++|+
T Consensus 98 ~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 98 NEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------------K-VKNKIFTMDTN 159 (342)
T ss_dssp CCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------------S-SCCCEEEEEEC
T ss_pred cCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE---------------e-eCCceEEEEec
Confidence 222367888899 87 478999999999999986 5444433 3 88999999999
Q ss_pred cCccCCCcEEEEEeCCCcEEEEEcCC-CcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-
Q psy1242 404 ECNITADCFIASGSADCTVLLWHWNA-RTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT- 480 (540)
Q Consensus 404 p~~~~dg~~l~sgs~DgtV~lWd~~~-~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~- 480 (540)
| ++ +++++.|+.|++||++. ... ........|...|.+++|+| ++.++++++.||.|++|+.
T Consensus 160 ~----~~--l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 160 S----SR--LIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp S----SE--EEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred C----Cc--EEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 8 55 99999999999999875 321 23345567889999999999 9999999999999999965
Q ss_pred CC------cEEEEecCCCC-------CCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-c-CCcceecC
Q psy1242 481 FG------DLLRSLDPPSG-------FASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-H-NDNLQKTA 540 (540)
Q Consensus 481 ~g------~~~~~l~~~~~-------~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~-~~~V~~va 540 (540)
.+ +.+..+..|.. ...|.+++|+|+|++|+++ .||.|++|+++ ++.+..+. | .+.|.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 33 66777777643 1268999999999988884 68999999998 77787776 6 88888764
No 70
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=1.6e-21 Score=195.46 Aligned_cols=238 Identities=13% Similarity=0.050 Sum_probs=175.3
Q ss_pred CCcEEEEEccCcceEEEEcCCCC-CcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCc--
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQ-- 333 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~-~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~-- 333 (540)
+++..++.+..+..+..|..... ......+|.+.+ ..+.+++|+.++++++ ......+.+... ...
T Consensus 19 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~ 92 (337)
T 1gxr_A 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVV----CAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLD 92 (337)
T ss_dssp SSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCC----CEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEE
T ss_pred CCCCEEEeecCCCcEeccccCCccccceeccCCCce----EEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeeccc
Confidence 33333666655555555544322 222334565443 3678999998888775 223333333211 100
Q ss_pred --ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242 334 --KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA 409 (540)
Q Consensus 334 --~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d 409 (540)
...-.+.+++|+|+++. |++|+.|+.|++||+.+++ ....+ .+|...|++++|+| +
T Consensus 93 ~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~---------------~~~~~~i~~~~~~~----~ 152 (337)
T 1gxr_A 93 CLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAEL---------------TSSAPACYALAISP----D 152 (337)
T ss_dssp CSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEEEEE---------------ECSSSCEEEEEECT----T
T ss_pred ccCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCCcceeeec---------------ccCCCceEEEEECC----C
Confidence 11224788899999995 7899999999999999876 33444 78999999999999 9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l 488 (540)
+++|++++.|+.|++||++. .+++..+.+|...|.+++|+|++.++++++.||.|++|+. +++.+..+
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 221 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHN-----------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221 (337)
T ss_dssp SSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCC-----------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee
Confidence 99999999999999999876 4577888999999999999999999999999999999986 67777776
Q ss_pred cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC-cEEEeeecCCcceec
Q psy1242 489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHESHNDNLQKT 539 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g-~~l~~~~~~~~V~~v 539 (540)
.. .. .+.+++|+|+|++++++ .++.|++|+++. +......|.+.|.++
T Consensus 222 ~~-~~--~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 222 DF-TS--QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271 (337)
T ss_dssp EC-SS--CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE
T ss_pred cC-CC--ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEE
Confidence 53 44 68999999999999985 589999999984 444333477877765
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.89 E-value=4.4e-22 Score=224.96 Aligned_cols=241 Identities=14% Similarity=0.091 Sum_probs=184.0
Q ss_pred CCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---ccee
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QKLR 336 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~~~ 336 (540)
+++..+++++.|++|++|+..++..... .+|.+.| ..+.|++|+..+++|+.+... ..+.+.... . ....
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV----RAGKFIARKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----EEEEEEGGGTEEEEEETTSEE-EEEETTTCCEEEEEECCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE----EEEEEeCCCCEEEEEeCCCeE-EEEECCCCcEEEEEecCC
Confidence 3333499999999999999877654332 2354333 367899999877777543322 222221110 0 0111
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
-.+.+++|+|++++ |++|+.||+|++||++++ .....+ .+|...|++++|+|. ++..|++
T Consensus 98 ~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~---~~~~l~~ 158 (814)
T 3mkq_A 98 DYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTF---------------EGHEHFVMCVAFNPK---DPSTFAS 158 (814)
T ss_dssp SCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEE---------------ECCSSCEEEEEEETT---EEEEEEE
T ss_pred CCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEE---------------cCCCCcEEEEEEEcC---CCCEEEE
Confidence 23788899999996 789999999999999987 555666 789999999999983 5789999
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISA--ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~sp--dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
|+.||+|++||+... .+...+..+ ...+.+++|+| ++.++++|+.||.|++|+. +++.+..+.+|
T Consensus 159 ~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999999999998752 344555544 48899999999 9999999999999999975 78889999988
Q ss_pred CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242 492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT 539 (540)
Q Consensus 492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v 539 (540)
.. .|.+++|+|+|.+|+++ .||.|++|++. ++.+..+. +.+.|.++
T Consensus 228 ~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 228 MS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp SS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred CC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 87 78999999999999885 58999999988 77777765 66666665
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=3.5e-22 Score=207.69 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=173.4
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-cC---c
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FS---Q 333 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~~---~ 333 (540)
.+++++..+++++.|++|++|+......... ..|.+.| ..+.|++|+.++++++.+... ..+.+... .. .
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~s~d~~i-~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEI----TKLKFFPSGEALISSSQDMQL-KIWSVKDGSNPRTLI 178 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTCCCCEEEE
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCcc----EEEEECCCCCEEEEEeCCCeE-EEEeCCCCcCceEEc
Confidence 4555666799999999999999887665444 3565443 367899999877777544332 22222211 00 0
Q ss_pred ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc---ceeeeeeEE------EeeccCcceEEEEecc
Q psy1242 334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY---GVVTSRIVQ------IIFGHYGVVTCLSRSE 404 (540)
Q Consensus 334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~---~~v~~~~~~------~l~~h~~~Vt~l~~sp 404 (540)
...-.+.+++|+|+++. |++|+.|++|++||+++++.+..+..|. ..+.+-... ....|...+++++|+|
T Consensus 179 ~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 179 GHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp CCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 11223788899999995 7899999999999999999998886433 222221110 0122456777788889
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-C
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-F 481 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~ 481 (540)
++++|++|+.||+|++||++.. +.+..+ .+|...|++++|+|++. +|++|+.||.|++|+. +
T Consensus 258 ----~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 258 ----YGKYVIAGHVSGVITVHNVFSK-----------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp ----TTEEEEEEETTSCEEEEETTTC-----------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred ----CCCEEEEEcCCCeEEEEECCCC-----------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999998763 333343 56889999999999999 9999999999999977 4
Q ss_pred C-cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC
Q psy1242 482 G-DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG 524 (540)
Q Consensus 482 g-~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g 524 (540)
+ .++..+..+... .|.++. .+++++|+++ .|+.|++|++..
T Consensus 323 ~~~~~~~~~~~~~~-~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 323 PECPVGEFLINEGT-PINNVY-FAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTSCSEEEEESTTS-CEEEEE-EETTEEEEEETTTEEEEEEEECC
T ss_pred CcCchhhhhccCCC-CceEEE-eCCCCEEEEecCCccEEEEeccC
Confidence 4 346667664432 577774 5678888875 589999999763
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-21 Score=196.19 Aligned_cols=220 Identities=11% Similarity=0.072 Sum_probs=171.2
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK 334 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~ 334 (540)
++...+.+++..+++++.|+.|++|+..++... ..+..+.
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------------------------------------~~~~~h~--- 74 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL-------------------------------------GTLDGHT--- 74 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEE-------------------------------------EEECCCS---
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh-------------------------------------hhhhhcC---
Confidence 333444445555999999999999997542211 0111111
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
-.+.+++|+|++++ |++++.||+|++||+.+++.+..+ . |...|.+++|+| ++.+|+
T Consensus 75 --~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~---------------~-~~~~v~~~~~~~----~~~~l~ 131 (369)
T 3zwl_B 75 --GTIWSIDVDCFTKY-CVTGSADYSIKLWDVSNGQCVATW---------------K-SPVPVKRVEFSP----CGNYFL 131 (369)
T ss_dssp --SCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEEE---------------E-CSSCEEEEEECT----TSSEEE
T ss_pred --CcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEEe---------------e-cCCCeEEEEEcc----CCCEEE
Confidence 12678889999995 789999999999999999988877 4 788999999999 999999
Q ss_pred EEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeC-C-CcEE
Q psy1242 415 SGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSGSQLGPVLVHTT-F-GDLL 485 (540)
Q Consensus 415 sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~v~iw~~-~-g~~~ 485 (540)
+++.+ +.|++||+...............+...+.+|.. .+.+++|+|+++++++++.||.|++|+. + ++.+
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 211 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV 211 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE
T ss_pred EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 99999 999999987643211100111235566777777 9999999999999999999999999987 4 6888
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
..+..|.. .|.+++|+|++.+|+++ .|+.|++||+. ++.+..+.+...+.++
T Consensus 212 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 212 DSIDLHEK--SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp EEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEecCCC--ceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence 89988887 78999999999999885 68999999987 7787777777666654
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=2e-21 Score=203.35 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=157.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEEeec
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQIIFG 392 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~l~~ 392 (540)
+.|++|+|+|++ ||+|+.||+|+|||+++++.+..+.+|...+.+ ..+..+.+
T Consensus 150 V~sv~fspdg~~-lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 150 ISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp EEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECCCCCE-EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 678888999995 789999999999999999999888888876643 34567789
Q ss_pred cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEE--E
Q psy1242 393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVS--G 469 (540)
Q Consensus 393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~las--g 469 (540)
|...+.++.++| ++.++++++.|+.|++|+....... ...+.....|...|.+++|+|.+. ++++ |
T Consensus 229 h~~~~~~~~~~~----~g~~l~s~~~D~~v~i~~~~~~~~~-------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 229 HSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG-------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp CSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCCSSC-------SCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred cccceeeeeecC----CCCeeeeeeccccceEEeecccccc-------ceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence 999999999999 9999999999999999998764321 245677889999999999999765 5554 4
Q ss_pred eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe---cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY---ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~---~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
+.|++|++|+. +++++..+..+. .+.++.|+++++.++++ .|+.|++||+. ++.+..+. |.+.|++|+
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~ 371 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 57999999976 888888887765 57899999999988864 47999999986 88888886 999999874
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.89 E-value=1e-21 Score=203.93 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=142.0
Q ss_pred EEEEEEec-CCCEEEEEEecCCcEEEEEccCC-------eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242 339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNA-------RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g-------~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg 410 (540)
+.+++|+| +++ +|++|+.||+|+|||+.++ +.+..+ .+|.+.|++++|+| ++
T Consensus 84 V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~---------------~~h~~~v~~~~~~p----~~ 143 (402)
T 2aq5_A 84 VLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVITL---------------EGHTKRVGIVAWHP----TA 143 (402)
T ss_dssp EEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSEEE---------------ECCSSCEEEEEECS----SB
T ss_pred EEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceEEe---------------cCCCCeEEEEEECc----CC
Confidence 78889999 787 5899999999999999987 344555 88999999999999 77
Q ss_pred -cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242 411 -CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR 486 (540)
Q Consensus 411 -~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~ 486 (540)
.+|++|+.|++|++||++. ++++..+ .+|...|.+++|+|++.+|++++.||.|++|+. +++.+.
T Consensus 144 ~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 144 QNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp TTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 6999999999999999876 4567788 889999999999999999999999999999986 788888
Q ss_pred Ee-cCCCCCCCceEEEEeeCCCEEEEe----cCCeEEEEecC-CcE---EEeeecCCcceec
Q psy1242 487 SL-DPPSGFASPESVVMSREGVIVVNY----ERGHIAAFTMN-GNR---LRHESHNDNLQKT 539 (540)
Q Consensus 487 ~l-~~~~~~~~v~~l~fspdg~~l~s~----~dg~I~lw~~~-g~~---l~~~~~~~~V~~v 539 (540)
.+ ..|.+. .+.+++|+|+|++|++| .++.|++||++ ++. +....+...|.++
T Consensus 213 ~~~~~~~~~-~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 213 EKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp EEECSSCSS-SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred eeccCCCCC-cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 88 677662 37899999999999987 68999999987 332 2223355556554
No 76
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.9e-22 Score=202.11 Aligned_cols=226 Identities=8% Similarity=-0.013 Sum_probs=152.5
Q ss_pred CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCC---CCccccCCCCeeeccCCCCCCccccccCC-----CcCc
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPP---GNLPLTLDPILTHPTSNNNAPVPKRHLGD-----NFSQ 333 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~---~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~~~~ 333 (540)
.+...++|++.|++|++||..++....... ...+.... ..++.+.|+.+.+..... ......+.. ....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~~~s~s~D~~i~~w~~~~--~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPAIISRGPCNRLLLLYPGN--QITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCSEEEECSTTEEEEEETTT--EEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCceEEecCCCeEEEEEccC--ceEEeecCCcceeEEeec
Confidence 356679999999999999998765433222 11121100 022333344333221000 000000000 0000
Q ss_pred ceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 334 KLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 334 ~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
...-.+.+++++| ++++ +++|+.||+|++||+++++...... ..|...|++++|+| +|.
T Consensus 123 ~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~--------------~~~~~~i~~~~~~p----dg~ 183 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHS--------------AKSDVEYSSGVLHK----DSL 183 (343)
T ss_dssp CCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEEC--------------CCSSCCCCEEEECT----TSC
T ss_pred CCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEe--------------cCCCCceEEEEECC----CCC
Confidence 0112378899999 9995 7999999999999999998866551 24556899999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcce-EEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPR-ATLTG-HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l 488 (540)
+|++|+.|++|++||++.. +.+ ..+.+ |...|++++|+|++.+|++++ |++|++|+. +++.+..+
T Consensus 184 ~lasg~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSP-----------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp EEEEECTTSCEEEEESSCT-----------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred EEEEEcCCCEEEEEECCCC-----------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 9999999999999998863 344 67777 999999999999999999999 559999976 55554444
Q ss_pred cC---CCCCCCce--EEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242 489 DP---PSGFASPE--SVVMSREGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 489 ~~---~~~~~~v~--~l~fspdg~~l~s~--~dg~I~lw~~~ 523 (540)
.. +.. .+. +++|+|+|++|+++ +++.|++|+.+
T Consensus 252 ~~~~~~~~--~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 252 PTYTIPEF--KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp CCCBC-------CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cccccccc--cccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 43 222 333 69999999999983 38999999874
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.4e-22 Score=207.86 Aligned_cols=208 Identities=13% Similarity=0.052 Sum_probs=153.1
Q ss_pred CCCccccCCCCeeeccCCCCCCccccccC-------CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe--
Q psy1242 300 PGNLPLTLDPILTHPTSNNNAPVPKRHLG-------DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-- 370 (540)
Q Consensus 300 ~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-- 370 (540)
...+.|++|+.++++|+.+... ..+.+. ..+. ...-.+.+++|+|++++ |++|+.|++|++||+.+++
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i-~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~-l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQV-ELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNR-IVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCB-CEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCC-EEEEETTSSEEEC------CC
T ss_pred EEEEEECCCCCEEEEecCCCEE-EEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCCce
Confidence 3467899999888887544333 111111 1111 11223788899999995 7999999999999999876
Q ss_pred -EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc
Q psy1242 371 -IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG 449 (540)
Q Consensus 371 -~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~ 449 (540)
....+ .+|.+.|++++|+| ++++|++|+.|++|++||++.... ......+.+
T Consensus 91 ~~~~~~---------------~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~ 143 (377)
T 3dwl_C 91 KQTLVL---------------LRLNRAATFVRWSP----NEDKFAVGSGARVISVCYFEQEND--------WWVSKHLKR 143 (377)
T ss_dssp CCEEEC---------------CCCSSCEEEEECCT----TSSCCEEEESSSCEEECCC-------------CCCCEEECS
T ss_pred eeeeEe---------------cccCCceEEEEECC----CCCEEEEEecCCeEEEEEECCccc--------ceeeeEeec
Confidence 44444 78999999999999 999999999999999999876321 124677777
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-------------------CCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242 450 -HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-------------------FGDLLRSLDPPSGFASPESVVMSREGVIV 509 (540)
Q Consensus 450 -h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-------------------~g~~~~~l~~~~~~~~v~~l~fspdg~~l 509 (540)
|...|.+++|+|++++|++|+.||+|++|+. .++++..+ .|.. .|.+++|+|+|++|
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG--WVHAVGFSPSGNAL 220 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS--SEEEEEECTTSSCE
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc--eEEEEEECCCCCEE
Confidence 9999999999999999999999999999975 25667777 7776 78999999999988
Q ss_pred EE-ecCCeEEEEecC-CcE----EEeee-cCCcceecC
Q psy1242 510 VN-YERGHIAAFTMN-GNR----LRHES-HNDNLQKTA 540 (540)
Q Consensus 510 ~s-~~dg~I~lw~~~-g~~----l~~~~-~~~~V~~va 540 (540)
++ +.|+.|++|++. ++. +..+. |...|.+++
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL 258 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence 88 468999999987 544 45554 777777763
No 78
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=4.9e-21 Score=190.69 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=153.3
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEEeec
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQIIFG 392 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~l~~ 392 (540)
+.+++|+|++++ +++|+.||+|++||+++++.+..+.+|...+.+ ..+..+.+
T Consensus 70 V~~v~~~~~~~~-l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 148 (318)
T 4ggc_A 70 ISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148 (318)
T ss_dssp EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECCCCCE-EEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence 688899999995 799999999999999999999999988876543 34567789
Q ss_pred cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE---EEEE
Q psy1242 393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL---VVSG 469 (540)
Q Consensus 393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~---lasg 469 (540)
|...+.++++++ ++++|++++.|++|++||+++.... .........|...|.+++++|++.. ++++
T Consensus 149 ~~~~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 149 HSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG-------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp CSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCBTTB-------SCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred ccCceEEEEEcC----CCCEEEEEecCcceeEEECCCCccc-------ccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence 999999999999 9999999999999999998764422 2345667788999999999997753 3467
Q ss_pred eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe---cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY---ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~---~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
+.+++|++|+. .+....... +.. .+..++|+|++..++++ .|+.|++||+. ++.+..+. |.+.|++|+
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVD-AHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCCCEEEEEeccccccccccc-cee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 78999999977 444444444 344 68999999999988763 48999999987 88888886 999999874
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.2e-21 Score=198.27 Aligned_cols=243 Identities=10% Similarity=0.041 Sum_probs=169.2
Q ss_pred ccceeeecCC---cEEEEEccCcceEEEEcCCCCC-cc-cCCCCcCCCCCCC--CCccccCCCCeeeccCCCCCCccccc
Q psy1242 254 ANTYVTLHMP---SVVTVTANHQFAINRWNPDYAA-SI-QSPSYAETPGSPP--GNLPLTLDPILTHPTSNNNAPVPKRH 326 (540)
Q Consensus 254 ~~~~~~~~~~---~~~lvs~s~D~tv~~W~~~~~~-~~-~~~~~~~~v~~~~--~~~~~s~D~~l~~~g~~~~~~~~~~~ 326 (540)
+++...+.++ +..+++++.|++|++|+..... .. ...+|.+.+.... ..+.+++|+..+++++.+... ..+.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i-~vwd 145 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV-KVWD 145 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE-EEEC
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE-EEEe
Confidence 3444445444 4669999999999999998765 22 2335654443211 012567888777776543322 2222
Q ss_pred cCCCc---------CcceeeEEEEEE----EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc
Q psy1242 327 LGDNF---------SQKLRVRHNCFV----TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH 393 (540)
Q Consensus 327 ~~~~~---------~~~~~v~~~~~~----~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h 393 (540)
+.... .......+.+++ ++|+++. +++|+.||.|++||+++++.... ..|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~----------------~~~ 208 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMALRWE----------------TNI 208 (357)
T ss_dssp TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEEEEE----------------EEC
T ss_pred CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCceeee----------------cCC
Confidence 21110 111111345555 6789995 79999999999999998887543 468
Q ss_pred CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCC
Q psy1242 394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQL 472 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~D 472 (540)
...|++++|+|.. .++.+|++|+.|+.|++||++..... .......+.+|...|++++|+|++. ++++|+.|
T Consensus 209 ~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 209 KNGVCSLEFDRKD-ISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp SSCEEEEEESCSS-SSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCceEEEEcCCCC-CCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 8999999999810 03689999999999999998763211 0011123458999999999999998 89999999
Q ss_pred CcEEEEeCC-C-------------------cEEEEecCCCCCCCceEEEEeeCCCEEE-E-ecCCeEEEEecC
Q psy1242 473 GPVLVHTTF-G-------------------DLLRSLDPPSGFASPESVVMSREGVIVV-N-YERGHIAAFTMN 523 (540)
Q Consensus 473 g~v~iw~~~-g-------------------~~~~~l~~~~~~~~v~~l~fspdg~~l~-s-~~dg~I~lw~~~ 523 (540)
|.|++|+.. + +.+..+..|.. .|.+++|+|+|++|+ + +.|+.|++|++.
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999652 1 46778888887 789999999999887 5 568999999986
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=2.2e-21 Score=203.08 Aligned_cols=231 Identities=14% Similarity=0.137 Sum_probs=167.3
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC---
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS--- 332 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~--- 332 (540)
.+.+.+++..+++|+.|++|++|+..+++... ..+|...+ .+++.++.++++|+.+..... +.......
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------~~~s~~~~~l~sgs~d~~i~~-~d~~~~~~~~~ 224 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------GSLSWNSYILSSGSRSGHIHH-HDVRVAEHHVA 224 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------EEEEEETTEEEEEETTSEEEE-EETTSSSCEEE
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------EEEeeCCCEEEEEeCCCceeE-eeecccceeeE
Confidence 33444455559999999999999998766432 33454322 346667877777754433211 11111100
Q ss_pred --cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242 333 --QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410 (540)
Q Consensus 333 --~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg 410 (540)
......+.++.++|+++. +++++.|+.+++|+..+++..... +.....|.+.|.+++|+|. ++
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~-----------~~~~~~~~~~V~~~~~~p~---~~ 289 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVP-----------LQTFTQHQGAVKAVAWCPW---QS 289 (420)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCC-----------SEEECCCSSCEEEEEECTT---CT
T ss_pred EecccccceeeeeecCCCCe-eeeeeccccceEEeecccccccee-----------eeeecccCCceeeeeeCCC---cc
Confidence 011123677888999995 799999999999999876532110 1122689999999999993 45
Q ss_pred cEEEEE--eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CCcEE
Q psy1242 411 CFIASG--SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FGDLL 485 (540)
Q Consensus 411 ~~l~sg--s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g~~~ 485 (540)
..++++ +.|++|++||+.+ +++...+..| ..+.++.|+++++.+++++ .||.|+||+. +++++
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t-----------~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCS-----------GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTT-----------TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred cEEEEEeecCCCEEEEEeCCc-----------cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 566654 5799999999876 4566666554 5688999999999888765 7999999976 89999
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
.++.+|.+ .|.+++|+|+|++|++ +.|++|++|++.
T Consensus 358 ~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 358 AELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999998 8999999999999998 568999999975
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.4e-21 Score=201.32 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=167.7
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS- 332 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~- 332 (540)
++.+.+.+++..+++++.|+.|++|+..++..... .+|...+. .+.+ ++.++++|+.+... ..+.+.....
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~----~~~~--~~~~l~~~~~dg~i-~i~d~~~~~~~ 209 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG----CLSW--NRHVLSSGSRSGAI-HHHDVRIANHQ 209 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----EEEE--ETTEEEEEETTSEE-EEEETTSSSCE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE----EEEE--CCCEEEEEcCCCCE-EEEecccCcce
Confidence 34445555666799999999999999987653332 24543332 2334 56566665433222 2222221000
Q ss_pred ----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242 333 ----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT 408 (540)
Q Consensus 333 ----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~ 408 (540)
......+.+++|+|+++. |++|+.|+.|++||+.+++.+..+ .+|...|++++|+|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~p---- 269 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTK---------------TNHNAAVKAVAWCP---- 269 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCSSEEEEE---------------CCCSSCCCEEEECT----
T ss_pred eeEEcCCCCCeeEEEEcCCCCE-EEEEeCCCeEEEccCCCCCccEEe---------------cCCcceEEEEEECC----
Confidence 011223788999999995 799999999999999999888877 78999999999999
Q ss_pred CC-cEEEEEe--CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CC
Q psy1242 409 AD-CFIASGS--ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FG 482 (540)
Q Consensus 409 dg-~~l~sgs--~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g 482 (540)
++ ..+++|+ .|++|++||+.. ++++..+. |...|.+++|+|++..+++++ .||.|++|+. ++
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~-----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAAT-----------GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTT-----------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-----------CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 55 5666665 799999999876 34566664 667899999999999999954 8999999976 54
Q ss_pred cEE--EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEee
Q psy1242 483 DLL--RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHE 530 (540)
Q Consensus 483 ~~~--~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~ 530 (540)
+.. ..+.+|.. .|.+++|+|+|++|+++ .||.|++|++. ++.+...
T Consensus 338 ~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 338 GLTKQVDIPAHDT--RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEEECCSS--CCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cceeEEEecCCCC--CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 443 34667877 78999999999999985 68999999997 5555443
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.89 E-value=5.5e-22 Score=200.68 Aligned_cols=238 Identities=10% Similarity=0.011 Sum_probs=164.5
Q ss_pred EEEEccC---cceEEEEcCCCCCccc--CCCCcCCCCCCCCCccccCC---CCeeeccCCCCCCccccccCCC-------
Q psy1242 266 VTVTANH---QFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTLD---PILTHPTSNNNAPVPKRHLGDN------- 330 (540)
Q Consensus 266 ~lvs~s~---D~tv~~W~~~~~~~~~--~~~~~~~v~~~~~~~~~s~D---~~l~~~g~~~~~~~~~~~~~~~------- 330 (540)
++++++. |++|++|+..++.... ...|...+ ..+.|+++ +.++++|+.+... ..+.+...
T Consensus 33 l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~ 107 (357)
T 3i2n_A 33 FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI----KCGTFGATSLQQRYLATGDFGGNL-HIWNLEAPEMPVYSV 107 (357)
T ss_dssp EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE----EEEECTTCCTTTCCEEEEETTSCE-EEECTTSCSSCSEEE
T ss_pred EEEecCccCCCcEEEEEeCCCCcccceeeecccCcE----EEEEEcCCCCCCceEEEecCCCeE-EEEeCCCCCccEEEE
Confidence 4667766 9999999998765332 22454333 35678887 5666665433222 22222111
Q ss_pred cCcceeeEEEEE------EEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEE--
Q psy1242 331 FSQKLRVRHNCF------VTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS-- 401 (540)
Q Consensus 331 ~~~~~~v~~~~~------~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~-- 401 (540)
..+... +.++ +|+|+++. |++|+.|++|++||+.+++ .+..+..|.. .+...|.+++
T Consensus 108 ~~~~~~--v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~ 173 (357)
T 3i2n_A 108 KGHKEI--INAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQG-----------ENKRDCWTVAFG 173 (357)
T ss_dssp CCCSSC--EEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCTT-----------SCCCCEEEEEEE
T ss_pred Eecccc--eEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccCC-----------CCCCceEEEEEE
Confidence 112223 4455 45789995 7999999999999999886 6666632211 1133789998
Q ss_pred --eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC---CCCEEEEEeCCCcEE
Q psy1242 402 --RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA---ELGLVVSGSQLGPVL 476 (540)
Q Consensus 402 --~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp---dg~~lasgs~Dg~v~ 476 (540)
|+| ++++|++|+.|+.|++||++.. ++ .....|...|.+++|+| ++.++++|+.||.|+
T Consensus 174 ~~~~~----~~~~l~~~~~d~~i~i~d~~~~-----------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 174 NAYNQ----EERVVCAGYDNGDIKLFDLRNM-----------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CCCC-----CCCEEEEEETTSEEEEEETTTT-----------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred eccCC----CCCEEEEEccCCeEEEEECccC-----------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 677 9999999999999999998762 23 44467899999999999 999999999999999
Q ss_pred EEeC-CCcEEE-----EecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecCC--------------------cEEE
Q psy1242 477 VHTT-FGDLLR-----SLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMNG--------------------NRLR 528 (540)
Q Consensus 477 iw~~-~g~~~~-----~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g--------------------~~l~ 528 (540)
+|+. +++.+. .+..|.. .|.+++|+|+++ ++++ +.||.|++|+++. +.+.
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 9965 333322 3347777 789999999998 6776 5689999999862 2444
Q ss_pred eee-cCCcceecC
Q psy1242 529 HES-HNDNLQKTA 540 (540)
Q Consensus 529 ~~~-~~~~V~~va 540 (540)
.+. |.+.|++++
T Consensus 316 ~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 316 NVTLSTQPISSLD 328 (357)
T ss_dssp EEECCSSCEEEEE
T ss_pred ccccCCCCeeEEE
Confidence 444 788887763
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=6.5e-21 Score=198.09 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=147.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++|+|+++. |++|+.||.|++||+.+++.+..+ .+|.+.|.+++|++ ..|++|+.
T Consensus 137 v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~------~~l~~~~~ 194 (401)
T 4aez_A 137 VASVKWSHDGSF-LSVGLGNGLVDIYDVESQTKLRTM---------------AGHQARVGCLSWNR------HVLSSGSR 194 (401)
T ss_dssp EEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEEET------TEEEEEET
T ss_pred EEEEEECCCCCE-EEEECCCCeEEEEECcCCeEEEEe---------------cCCCCceEEEEECC------CEEEEEcC
Confidence 678899999995 799999999999999999988888 78999999999954 69999999
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP 497 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v 497 (540)
|++|++||++.. ...+..+.+|...|.+++|+|++.+|++|+.||.|++|+. +++.+..+..|.. .|
T Consensus 195 dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~v 262 (401)
T 4aez_A 195 SGAIHHHDVRIA----------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA--AV 262 (401)
T ss_dssp TSEEEEEETTSS----------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS--CC
T ss_pred CCCEEEEecccC----------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc--eE
Confidence 999999998742 2467888999999999999999999999999999999976 7888889988887 78
Q ss_pred eEEEEeeCCC-EEEEec---CCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242 498 ESVVMSREGV-IVVNYE---RGHIAAFTMN-GNRLRHESHNDNLQKTA 540 (540)
Q Consensus 498 ~~l~fspdg~-~l~s~~---dg~I~lw~~~-g~~l~~~~~~~~V~~va 540 (540)
.+++|+|++. ++++++ |+.|++||+. ++.+..+.+...|.+++
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~ 310 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI 310 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999999775 566654 8999999987 88888888888887763
No 84
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=3.5e-21 Score=193.44 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=114.0
Q ss_pred EEEEec---CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE----
Q psy1242 341 CFVTTV---DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI---- 413 (540)
Q Consensus 341 ~~~~sp---dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l---- 413 (540)
.++|++ +++ +||+|+.|++|+|||+.+|++++++.+|. .|...|.+++|+| +|.++
T Consensus 183 ~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~------------~~v~~v~~vafSp----dG~~lvs~s 245 (356)
T 2w18_A 183 ILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDD------------SYQASVCHKAYSE----MGLLFIVLS 245 (356)
T ss_dssp EEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---------------CCCEEEEEEE----TTEEEEEEC
T ss_pred eEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCC------------cceeeeEEEEECC----CCCEEEEec
Confidence 344455 567 58999999999999999999999983321 1234788889999 88876
Q ss_pred --------EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242 414 --------ASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-----TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT 480 (540)
Q Consensus 414 --------~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~ 480 (540)
++|+.|++|++||..+ ++.+..+ .+|...+.+.+++ +.++|+|+.||+|+||+.
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~t-----------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKT-----------TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp ------------CCEEEEEEETTT-----------TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred cCCCcceeeccCCCcEEEEEECCC-----------CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 6788999999999876 3344443 4777766555554 789999999999999987
Q ss_pred -CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec
Q psy1242 481 -FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM 522 (540)
Q Consensus 481 -~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~ 522 (540)
+|+++.++.+|... .+..++|+|||++|++| .|++|++|++
T Consensus 313 ~tGk~l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 89999999988762 24468999999999985 5899999985
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.88 E-value=4.4e-21 Score=199.15 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=160.4
Q ss_pred ceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242 256 TYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK 334 (540)
Q Consensus 256 ~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~ 334 (540)
+...+.+ +...+++++.|++|++|+...+..... .. .....+..+.
T Consensus 85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----------------~~-------------~~~~~~~~h~--- 131 (402)
T 2aq5_A 85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----------------LR-------------EPVITLEGHT--- 131 (402)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----------------BC-------------SCSEEEECCS---
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----------------cC-------------CceEEecCCC---
Confidence 3333433 445599999999999999865321100 00 0001111111
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
-.+.+++|+|+++.+|++|+.|++|++||+++++.+..+.. .+|.+.|++++|+| ++++|+
T Consensus 132 --~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~----~~~~l~ 192 (402)
T 2aq5_A 132 --KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-------------DVHPDTIYSVDWSR----DGALIC 192 (402)
T ss_dssp --SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-------------TTCCSCEEEEEECT----TSSCEE
T ss_pred --CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-------------CCCCCceEEEEECC----CCCEEE
Confidence 13788899999854689999999999999999988766610 36889999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCC-EEEEEEcCCCCEEEEE---eCCCcEEEEeC-CCcE-EEE
Q psy1242 415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQP-VTSVAISAELGLVVSG---SQLGPVLVHTT-FGDL-LRS 487 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~-V~~v~~spdg~~lasg---s~Dg~v~iw~~-~g~~-~~~ 487 (540)
+|+.|++|++||++. ++++..+ .+|.+. +.+++|+|++.++++| +.|+.|++|+. +++. +..
T Consensus 193 ~~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp EEETTSEEEEEETTT-----------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred EEecCCcEEEEeCCC-----------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE
Confidence 999999999999876 4566777 788876 8999999999999999 79999999976 3332 222
Q ss_pred ec-CCCCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC-CcE-EEee---ecCCcceecC
Q psy1242 488 LD-PPSGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN-GNR-LRHE---SHNDNLQKTA 540 (540)
Q Consensus 488 l~-~~~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~-g~~-l~~~---~~~~~V~~va 540 (540)
.. .+.. .+.+++|+|+|++|++ + .||.|++|+++ ++. +..+ .+.+.|.+++
T Consensus 262 ~~~~~~~--~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 262 QELDTSS--GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp EECCCCS--SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred EeccCCC--ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 22 3344 6899999999999864 5 48999999998 441 3333 3557777653
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.88 E-value=5.1e-21 Score=208.39 Aligned_cols=249 Identities=10% Similarity=0.031 Sum_probs=185.9
Q ss_pred ceeeecC--CcEEEEEccCcceEEEEcCCCC--------Ccc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCC---C
Q psy1242 256 TYVTLHM--PSVVTVTANHQFAINRWNPDYA--------ASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA---P 321 (540)
Q Consensus 256 ~~~~~~~--~~~~lvs~s~D~tv~~W~~~~~--------~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~---~ 321 (540)
+...+.+ ++..+++++.|++|++|+..++ ... ....|.. ....+.|++|+..+++++.... .
T Consensus 68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~~~ 143 (615)
T 1pgu_A 68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----PISDISWDFEGRRLCVVGEGRDNFGV 143 (615)
T ss_dssp EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----CEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc----cEEEEEEeCCCCEEEEeccCCCCccE
Confidence 3344444 5556999999999999998643 111 1223432 2346789999987776643311 1
Q ss_pred ccccccCCCcC--cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc---c
Q psy1242 322 VPKRHLGDNFS--QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG---V 396 (540)
Q Consensus 322 ~~~~~~~~~~~--~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~---~ 396 (540)
...+....... ....-.+.+++|+|+++.++++|+.|+.|++||+.+++.+..+ .+|.+ .
T Consensus 144 v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---------------~~~~~~~~~ 208 (615)
T 1pgu_A 144 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---------------RTHHKQGSF 208 (615)
T ss_dssp EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---------------CSSSCTTCC
T ss_pred EEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee---------------cccCCCCce
Confidence 11111111000 0112237889999999866899999999999999999988888 78888 9
Q ss_pred eEEEEeccCccCC-CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-c---cCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 397 VTCLSRSECNITA-DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-T---GHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 397 Vt~l~~sp~~~~d-g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~---~h~~~V~~v~~spdg~~lasgs~ 471 (540)
|++++|+| + +++|++|+.|+.|++||+.. ++++..+ . +|...|.+++|+ ++.+|++++.
T Consensus 209 v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 272 (615)
T 1pgu_A 209 VRDVEFSP----DSGEFVITVGSDRKISCFDGKS-----------GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA 272 (615)
T ss_dssp EEEEEECS----TTCCEEEEEETTCCEEEEETTT-----------CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET
T ss_pred EEEEEECC----CCCCEEEEEeCCCeEEEEECCC-----------CCEeEEecccccccCCceEEEEEc-CCCEEEEEcC
Confidence 99999999 8 99999999999999999876 4567777 5 899999999999 9999999999
Q ss_pred CCcEEEEeC-CCcEEEEecCCCCC--CCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 472 LGPVLVHTT-FGDLLRSLDPPSGF--ASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~~~~~--~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
||.|++|+. +++.+..+..+... ..+.++.|+ ++.++++ +.++.|++|++. ++.+..+. |.+.|++++
T Consensus 273 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 999999976 68888888876321 156778886 7777776 568999999998 67776665 888888763
No 87
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=9.9e-23 Score=211.82 Aligned_cols=254 Identities=8% Similarity=-0.055 Sum_probs=160.7
Q ss_pred eeecCCcEEEEEccCcceEEEEcCCCCCc------ccCCCCcCCCCCCCCCccccC--------CCCeeeccCCCCCCcc
Q psy1242 258 VTLHMPSVVTVTANHQFAINRWNPDYAAS------IQSPSYAETPGSPPGNLPLTL--------DPILTHPTSNNNAPVP 323 (540)
Q Consensus 258 ~~~~~~~~~lvs~s~D~tv~~W~~~~~~~------~~~~~~~~~v~~~~~~~~~s~--------D~~l~~~g~~~~~~~~ 323 (540)
...+.....+++++.|++|++|+...+.. ....+|.+.|. .+.|++ |+.++++++.+.. ..
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~----~v~~~p~~~~~~~~d~~~las~s~D~t-v~ 169 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN----DIDIADVYSADNRLAEQVIASVGDDCT-LI 169 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE----EEEEEEEECTTCSEEEEEEEEEETTSE-EE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE----EEEEccccccccCCCCCEEEEEECCCe-EE
Confidence 34556677899999999999999876542 23456776654 455654 7878887765443 33
Q ss_pred ccccCC------CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee----------eeE
Q psy1242 324 KRHLGD------NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------RIV 387 (540)
Q Consensus 324 ~~~~~~------~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~----------~~~ 387 (540)
.+.+.. .+.+. -.+.+++|+|++..+|++|+.|++|++||+.+++.......+...... ...
T Consensus 170 ~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEECCCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 343321 11111 236788999998777899999999999999988766554332221111 112
Q ss_pred EEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc-CC-------CCCCcceEEeccCCCCEEEEEE
Q psy1242 388 QIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV-GE-------TDTPTPRATLTGHEQPVTSVAI 459 (540)
Q Consensus 388 ~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~-------~~~~~~~~~l~~h~~~V~~v~~ 459 (540)
....+|.+.|.+++|++. +|+.|++++.|+++++||+........ .. ............+...+. +.+
T Consensus 248 ~~~~~~~~~v~~v~~~~~---dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 323 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGS---DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACP 323 (393)
T ss_dssp ----CCSSSCSEEEEETT---TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEE
T ss_pred eecccccccceeeeeecC---CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEE
Confidence 234689999999999732 899999999999999999875331100 00 000001122222222222 233
Q ss_pred cC--CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242 460 SA--ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524 (540)
Q Consensus 460 sp--dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g 524 (540)
++ ++.++++|+.||+|++|+. +++.+..+..|.. +|.+++|+|||++||+++++.+.+|.+.|
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 33 3346788899999999976 6777777777777 79999999999999999888899988754
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.88 E-value=1.1e-21 Score=199.96 Aligned_cols=229 Identities=17% Similarity=0.071 Sum_probs=168.6
Q ss_pred ceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC---
Q psy1242 256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD--- 329 (540)
Q Consensus 256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~--- 329 (540)
+...+.+++..+++++.|++|++|+....... ....|... ...+.+++|+..+++++.+... ..+.+..
T Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~v-~i~d~~~~~~ 130 (372)
T 1k8k_C 56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA----ARCVRWAPNEKKFAVGSGSRVI-SICYFEQEND 130 (372)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC----EEEEEECTTSSEEEEEETTSSE-EEEEEETTTT
T ss_pred cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc----eeEEEECCCCCEEEEEeCCCEE-EEEEecCCCc
Confidence 33444455556999999999999998665421 12334322 3357788999877776544333 1111111
Q ss_pred -----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc------------------CCeEEEEEecccceeeeee
Q psy1242 330 -----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD------------------NARIVQIIFGHYGVVTSRI 386 (540)
Q Consensus 330 -----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~------------------~g~~~~~l~~~~~~v~~~~ 386 (540)
.........+.+++|+|+++. |++|+.||.|++||++ +++.+..+
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 198 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES----------- 198 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-----------
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCE-EEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-----------
Confidence 111112234788999999995 7999999999999954 45666665
Q ss_pred EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV 466 (540)
Q Consensus 387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l 466 (540)
.+|.+.|++++|+| ++++|++++.|++|++||++. ++++..+.+|...|.+++|+|++.++
T Consensus 199 ----~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 199 ----SSSCGWVHGVCFSA----NGSRVAWVSHDSTVCLADADK-----------KMAVATLASETLPLLAVTFITESSLV 259 (372)
T ss_dssp ----CCCSSCEEEEEECS----SSSEEEEEETTTEEEEEEGGG-----------TTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred ----CCCCCeEEEEEECC----CCCEEEEEeCCCEEEEEECCC-----------CceeEEEccCCCCeEEEEEecCCCEE
Confidence 78999999999999 999999999999999999876 45788899999999999999999988
Q ss_pred EEEeCCCcEEEEeC-C--CcE--E------------------------------------EEe-cCCCCCCCceEEEEe-
Q psy1242 467 VSGSQLGPVLVHTT-F--GDL--L------------------------------------RSL-DPPSGFASPESVVMS- 503 (540)
Q Consensus 467 asgs~Dg~v~iw~~-~--g~~--~------------------------------------~~l-~~~~~~~~v~~l~fs- 503 (540)
++| .||.|++|+. + ++. + ..+ .+|.. +|.+++|.
T Consensus 260 ~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~ 336 (372)
T 1k8k_C 260 AAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN--SVSQISVLS 336 (372)
T ss_dssp EEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS--CEEEEEEEE
T ss_pred EEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC--CcceeEEec
Confidence 887 8999999965 3 321 0 222 36666 78999976
Q ss_pred eCC---CEEEE-ecCCeEEEEecC
Q psy1242 504 REG---VIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 504 pdg---~~l~s-~~dg~I~lw~~~ 523 (540)
++| .+|++ +.||.|++|+++
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHH
T ss_pred CCCcceeeEEEecCCCceEEEEec
Confidence 566 88888 569999999986
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.88 E-value=1.1e-21 Score=199.05 Aligned_cols=252 Identities=15% Similarity=0.078 Sum_probs=171.3
Q ss_pred EEEEccCcceEEEEcCCCCCcccC-CCCcCCC-CCCCCCccccCC----CCeeeccCCCCCCccccccCCCc-C---cce
Q psy1242 266 VTVTANHQFAINRWNPDYAASIQS-PSYAETP-GSPPGNLPLTLD----PILTHPTSNNNAPVPKRHLGDNF-S---QKL 335 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v-~~~~~~~~~s~D----~~l~~~g~~~~~~~~~~~~~~~~-~---~~~ 335 (540)
+++++ .++.|++|+..++..... ..|.... ......+.|+++ +.++++|+.+... ..+.+.... . ...
T Consensus 37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-~v~d~~~~~~~~~~~~~ 114 (366)
T 3k26_A 37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII-RIINPITMQCIKHYVGH 114 (366)
T ss_dssp EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE-EEECTTTCCEEEEEESC
T ss_pred EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE-EEEEchhceEeeeecCC
Confidence 34444 455999999886543322 2232111 122335678887 4566665433222 222221100 0 011
Q ss_pred eeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 336 RVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 336 ~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
.-.+.+++|+| +++ +|++|+.||+|++||+++++.+..+.. +.+|...|++++|+| ++++|+
T Consensus 115 ~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~v~~~~~~~----~~~~l~ 177 (366)
T 3k26_A 115 GNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG------------VEGHRDEVLSADYDL----LGEKIM 177 (366)
T ss_dssp CSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS------------TTSCSSCEEEEEECT----TSSEEE
T ss_pred CCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc------------cccccCceeEEEECC----CCCEEE
Confidence 22378889999 788 579999999999999999988776611 136899999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCcccccC----------C-------CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 415 SGSADCTVLLWHWNARTQSIVG----------E-------TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~----------~-------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
+|+.|++|++||++........ . ...........+|...|.+++|+ ++++++++.||.|++
T Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVC 255 (366)
T ss_dssp EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEE
T ss_pred EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEE
Confidence 9999999999998753211000 0 00011234455699999999998 779999999999999
Q ss_pred EeC-CC--------------cEEEEecCCCCCCCceEEEEeeC--CCEEEEe-cCCeEEEEecC-Cc----EEEeee-c-
Q psy1242 478 HTT-FG--------------DLLRSLDPPSGFASPESVVMSRE--GVIVVNY-ERGHIAAFTMN-GN----RLRHES-H- 532 (540)
Q Consensus 478 w~~-~g--------------~~~~~l~~~~~~~~v~~l~fspd--g~~l~s~-~dg~I~lw~~~-g~----~l~~~~-~- 532 (540)
|+. ++ ..+..+..|.. .|.+++|+|+ |++|+++ .||.|++|+++ ++ .+..+. |
T Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 965 33 34778888887 7899999999 9999985 57999999998 33 333443 4
Q ss_pred -CCcceecC
Q psy1242 533 -NDNLQKTA 540 (540)
Q Consensus 533 -~~~V~~va 540 (540)
...|++++
T Consensus 334 ~~~~v~~~~ 342 (366)
T 3k26_A 334 CGAAIRQTS 342 (366)
T ss_dssp CCSCEEEEE
T ss_pred cCCceEEEE
Confidence 67787763
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.88 E-value=2.4e-22 Score=203.85 Aligned_cols=248 Identities=16% Similarity=0.126 Sum_probs=174.0
Q ss_pred cEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCC-----CcC--cc
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGD-----NFS--QK 334 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~-----~~~--~~ 334 (540)
+..+++++.|++|++|+..+....... +|.+.+ ..+.|++ ++.++++++.+... ..+.+.. .+. ..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI----NELKFHPRDPNLLLSVSKDHAL-RLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE----EEEEECSSCTTEEEEEETTSCE-EEEETTTTEEEEEECSTTS
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcE----EEEEECCCCCCEEEEEeCCCeE-EEEEeecCeEEEEeccccc
Confidence 567999999999999999876644333 355333 3577888 88877776544332 2222211 010 11
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc-------------ceeeeeeEEEeeccCcceEEEE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY-------------GVVTSRIVQIIFGHYGVVTCLS 401 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~-------------~~v~~~~~~~l~~h~~~Vt~l~ 401 (540)
....+.+++|+|+++. |++|+.||.|++||+++++....+..+. ............+|.+.|++++
T Consensus 160 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 2234788899999995 7899999999999999876543331100 0000012233456999999999
Q ss_pred eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccC---CCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEE
Q psy1242 402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVG---ETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVL 476 (540)
Q Consensus 402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~---~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~ 476 (540)
|+. ++|++++.|+.|++||+......... .......+..+.+|...|++++|+|+ +++|++|+.||.|+
T Consensus 239 ~~~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 239 WLG------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp EET------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred EcC------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 974 59999999999999998764321100 01112457788899999999999999 99999999999999
Q ss_pred EEeC-CCc----EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 477 VHTT-FGD----LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 477 iw~~-~g~----~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
+|+. +++ ....+..|.....|.+++|+|+|++|++ +.||.|++|+++
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9976 443 5567887732227999999999999998 568999999975
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=3.6e-21 Score=191.68 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=162.1
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----c
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----Q 333 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~ 333 (540)
.+.+++..++|++.|++|++|+..+++.... .+|... ...++.++.++++++................ .
T Consensus 74 ~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 3334444599999999999999987664332 234422 2356667777776643322211111100000 0
Q ss_pred ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
...-.+.+++++++++. +++|+.|++|++||+.+++..... ......|.+.|.+++++|. ++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~---~~~~~ 212 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVP-----------LQTFTQHQGAVKAVAWCPW---QSNVL 212 (318)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCC-----------SEEECCCCSCEEEEEECTT---STTEE
T ss_pred CccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCcccccc-----------eeeecccCCceEEEEecCC---CCcEE
Confidence 11123677888999995 799999999999999877532111 1112578889999999982 33333
Q ss_pred --EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CCcEEEEe
Q psy1242 414 --ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 414 --~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g~~~~~l 488 (540)
++++.+++|++||.... . ......+...+.++++++++..+++++ .||.|++|+. +++++.++
T Consensus 213 ~~~~~~~~~~i~lwd~~~~-----------~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l 280 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSG-----------A-CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280 (318)
T ss_dssp EEEECTTTCEEEEEETTTC-----------C-EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EEEecCCCCEEEEEecccc-----------c-ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 46678999999998752 2 233456778899999999999887665 7999999976 89999999
Q ss_pred cCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 489 DPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
.+|.+ .|.+++|+|+|++|++ +.||+|++|++.
T Consensus 281 ~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 281 KGHTS--RVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred cCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99998 8999999999999998 568999999975
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-21 Score=202.76 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=134.0
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC---CcEEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA---DCFIAS 415 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d---g~~l~s 415 (540)
+.+++|+|++++ |++|+.||.+++|++.+++.... ....+.+|.+.|++++|+| + +++|++
T Consensus 152 v~~~~~sp~~~~-l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~sp----~~~~~~~l~s 215 (450)
T 2vdu_B 152 PNAISIAEDDTT-VIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHVSMLTDVHLIK----DSDGHQFIIT 215 (450)
T ss_dssp EEEEEECTTSSE-EEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECSSCEEEEEEEE----CTTSCEEEEE
T ss_pred ceEEEEcCCCCE-EEEEeCCCcEEEEecCCcccccc-----------cceeeecccCceEEEEEcC----CCCCCcEEEE
Confidence 567777777774 56777777777777766554320 1112378999999999999 9 999999
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC--
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP-- 491 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~-- 491 (540)
|+.|++|++||+.. ++++.. +.+|...|.+++|+ ++++|++|+.|++|++|+. +++++..+..+
T Consensus 216 ~~~d~~i~vwd~~~-----------~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 283 (450)
T 2vdu_B 216 SDRDEHIKISHYPQ-----------CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL 283 (450)
T ss_dssp EETTSCEEEEEESC-----------TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH
T ss_pred EcCCCcEEEEECCC-----------CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh
Confidence 99999999999876 345555 66999999999999 9999999999999999976 78888877632
Q ss_pred ---------------------CCCCCceEEEEeeCCCEEEEe--cCCeEEEEec--C-C---cEEEeeecCCcceecC
Q psy1242 492 ---------------------SGFASPESVVMSREGVIVVNY--ERGHIAAFTM--N-G---NRLRHESHNDNLQKTA 540 (540)
Q Consensus 492 ---------------------~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~--~-g---~~l~~~~~~~~V~~va 540 (540)
.....|.+++|+|++++|+++ .++.|++|++ . + +.+..+...+.|.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~ 361 (450)
T 2vdu_B 284 IKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLS 361 (450)
T ss_dssp HGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEE
T ss_pred hhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEE
Confidence 111268899999999999885 5899999999 3 4 4455555446776653
No 93
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=1.6e-20 Score=190.27 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe--ccCccCCCcEEEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR--SECNITADCFIASG 416 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~--sp~~~~dg~~l~sg 416 (540)
+.+++|+|++++ |++|+.||+|++||+.+++.+.. .+|.+.|++++| +| ++.+|++|
T Consensus 89 v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~----------------~~~~~~v~~~~~~~~~----~~~~l~~~ 147 (368)
T 3mmy_A 89 VLDVCWSDDGSK-VFTASCDKTAKMWDLSSNQAIQI----------------AQHDAPVKTIHWIKAP----NYSCVMTG 147 (368)
T ss_dssp EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEE----------------EECSSCEEEEEEEECS----SCEEEEEE
T ss_pred EEEEEECcCCCE-EEEEcCCCcEEEEEcCCCCceee----------------ccccCceEEEEEEeCC----CCCEEEEc
Confidence 678889999995 78999999999999998887653 479999999999 88 89999999
Q ss_pred eCCCcEEEEEcCCCcccccCCCC-----------------------------CCcceEEe-ccCCCCEEEEEEcCCCCE-
Q psy1242 417 SADCTVLLWHWNARTQSIVGETD-----------------------------TPTPRATL-TGHEQPVTSVAISAELGL- 465 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~-----------------------------~~~~~~~l-~~h~~~V~~v~~spdg~~- 465 (540)
+.|++|++||++........... .......+ ..+...+.++++.++...
T Consensus 148 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp ETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred cCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC
Confidence 99999999998764311100000 00000001 112344566666665544
Q ss_pred ---EEEEeCCCcEEEEeCC-C---cEEEEecCCCCCC----------CceEEEEeeCCCEEEEe-cCCeEEEEecC-CcE
Q psy1242 466 ---VVSGSQLGPVLVHTTF-G---DLLRSLDPPSGFA----------SPESVVMSREGVIVVNY-ERGHIAAFTMN-GNR 526 (540)
Q Consensus 466 ---lasgs~Dg~v~iw~~~-g---~~~~~l~~~~~~~----------~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~ 526 (540)
+++++.||.|++|+.. + ..+..+..|.... +|.+++|+|+|++|+++ .||.|++||++ ++.
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 9999999999999763 3 4556666665310 48999999999999885 68999999998 777
Q ss_pred EEeee-cCCcceecC
Q psy1242 527 LRHES-HNDNLQKTA 540 (540)
Q Consensus 527 l~~~~-~~~~V~~va 540 (540)
+..+. |.+.|++++
T Consensus 308 ~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 308 LKTSEQLDQPISACC 322 (368)
T ss_dssp EEECCCCSSCEEEEE
T ss_pred EEEecCCCCCceEEE
Confidence 77775 788888764
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.6e-21 Score=213.83 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=160.2
Q ss_pred cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee
Q psy1242 233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT 312 (540)
Q Consensus 233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~ 312 (540)
.|.+.+..+.|++++.. +++++.|++|++|+......
T Consensus 7 gH~~~V~~l~~s~dg~~-----------------latg~~dg~I~vwd~~~~~~-------------------------- 43 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKR-----------------LATCSSDKTIKIFEVEGETH-------------------------- 43 (753)
T ss_dssp -CCCCEEEECCCSSSCC-----------------EEEEETTTEEEEEEEETTEE--------------------------
T ss_pred cCcceeEEEEECCCCCe-----------------EEEEECCCcEEEEecCCCCC--------------------------
Confidence 44556666666666554 99999999999999642110
Q ss_pred eccCCCCCCccccccCCCcCcceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEE
Q psy1242 313 HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQ 388 (540)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~ 388 (540)
.....+.++. -.+.+++|+++ ++. |++|+.||+|++||+.+++ .+..+
T Consensus 44 ---------~~~~~l~~h~-----~~V~~l~~s~~~~~~~-l~s~s~Dg~I~vwd~~~~~~~~~~~~------------- 95 (753)
T 3jro_A 44 ---------KLIDTLTGHE-----GPVWRVDWAHPKFGTI-LASCSYDGKVLIWKEENGRWSQIAVH------------- 95 (753)
T ss_dssp ---------EEEEEECCCS-----SCEEEEEECCTTSCSE-EEEEETTSCEEEEEEETTEEEEEEEE-------------
T ss_pred ---------ccceeccCCc-----CceEEEEecCCCCCCE-EEEEeCCCeEEEEECCCCcccccccc-------------
Confidence 0111111111 12678888888 884 7999999999999999886 44444
Q ss_pred EeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-----
Q psy1242 389 IIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA----- 461 (540)
Q Consensus 389 ~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp----- 461 (540)
.+|.+.|++++|+| + +..+++|+.||+|++||++... ......+.+|...|.+++|+|
T Consensus 96 --~~h~~~V~~v~~sp----~~~~~~l~sgs~dg~I~vwdl~~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 96 --AVHSASVNSVQWAP----HEYGPLLLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp --CCCSSCEEEEEECC----GGGCSEEEEEETTSEEEEEECCSSS---------CCCCEEEECCSSCEEEEEECCCC---
T ss_pred --cCCCCCeEEEEECC----CCCCCEEEEEeCCCcEEEEEeecCC---------CcceeEeecCCCceEEEEecCccccc
Confidence 78999999999999 7 9999999999999999987643 234567789999999999999
Q ss_pred --------CCCEEEEEeCCCcEEEEeC-CC----cEEEEecCCCCCCCceEEEEeeC---CCEEEE-ecCCeEEEEecCC
Q psy1242 462 --------ELGLVVSGSQLGPVLVHTT-FG----DLLRSLDPPSGFASPESVVMSRE---GVIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 462 --------dg~~lasgs~Dg~v~iw~~-~g----~~~~~l~~~~~~~~v~~l~fspd---g~~l~s-~~dg~I~lw~~~g 524 (540)
++.++++|+.||+|++|+. ++ .++..+.+|.. +|.+++|+|+ |.++++ +.||.|++|++..
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999965 33 56678888888 8999999999 898888 4689999999874
No 95
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.8e-21 Score=218.57 Aligned_cols=165 Identities=10% Similarity=0.109 Sum_probs=132.3
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++|+| |+ +|++++.|++|++||+++++++..+ . |.+.|++++|+| ++++|++|+.
T Consensus 61 V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~---------------~-~~~~V~~v~~sp----~g~~l~sgs~ 118 (902)
T 2oaj_A 61 IKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTV---------------F-VPGKITSIDTDA----SLDWMLIGLQ 118 (902)
T ss_dssp EEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEE---------------E-CSSCEEEEECCT----TCSEEEEEET
T ss_pred EEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEE---------------c-CCCCEEEEEECC----CCCEEEEEcC
Confidence 77888999 88 5799999999999999999988777 3 668899999999 9999999999
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCcEEEEecCC----
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP---- 491 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~---- 491 (540)
||+|++||++.......... ..... ..+.+|...|++++|+|+ +..+++|+.||+| +|+. +++.++.+..+
T Consensus 119 dg~V~lwd~~~~~~~~~~i~-~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g 196 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLSSFKLD-NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF 196 (902)
T ss_dssp TSCEEEEETTTTEEEEEEEC-CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT
T ss_pred CCcEEEEECCCCccccceec-cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc
Confidence 99999999876321000000 00000 234689999999999996 5789999999999 9976 77788888765
Q ss_pred --------------CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242 492 --------------SGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRH 529 (540)
Q Consensus 492 --------------~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~ 529 (540)
.. .|.+++|+|+|++|++ +.||.|++||++ |+.+..
T Consensus 197 ~~~~~~~~~~~~~h~~--~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 197 APGGDFSEKTNEKRTP--KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp CCCSTTCCCTTSCBCC--CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCCcccccccccccCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 23 6899999999999998 568999999996 777653
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=1.7e-21 Score=196.19 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=139.0
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
.+.+++|+|+|++ ||+|+.|++|+|||+.+++. +..+ .+|.+.|++++|++. .++++|+|
T Consensus 15 ~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l---------------~gH~~~V~~v~~~~~--~~~~~l~s 76 (316)
T 3bg1_A 15 MIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILIADL---------------RGHEGPVWQVAWAHP--MYGNILAS 76 (316)
T ss_dssp CEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEE---------------ECCSSCEEEEEECCG--GGSSCEEE
T ss_pred eEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEE---------------cCCCccEEEEEeCCC--CCCCEEEE
Confidence 3788999999995 79999999999999987753 3445 899999999999751 03789999
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCc--E--EEEec
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTTFGD--L--LRSLD 489 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~~g~--~--~~~l~ 489 (540)
|+.|++|++||++... ..+...+.+|...|.+++|+|+ +.+|++|+.||+|++|+.... . ...+.
T Consensus 77 ~s~D~~v~iWd~~~~~---------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~ 147 (316)
T 3bg1_A 77 CSYDRKVIIWREENGT---------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147 (316)
T ss_dssp EETTSCEEEECCSSSC---------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred EECCCEEEEEECCCCc---------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence 9999999999987532 2356778899999999999998 789999999999999976432 2 34455
Q ss_pred CCCCCCCceEEEEeeC-----------------CCEEEE-ecCCeEEEEecCC----cEEEeee-cCCcceecC
Q psy1242 490 PPSGFASPESVVMSRE-----------------GVIVVN-YERGHIAAFTMNG----NRLRHES-HNDNLQKTA 540 (540)
Q Consensus 490 ~~~~~~~v~~l~fspd-----------------g~~l~s-~~dg~I~lw~~~g----~~l~~~~-~~~~V~~va 540 (540)
.|.. .|.+++|+|+ +++|++ +.|+.|++|++++ +.+..+. |.+.|++++
T Consensus 148 ~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 148 AHTI--GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp SSSS--CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred cccC--CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 6766 7899999997 467777 5689999999873 2455554 888888764
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.1e-21 Score=232.38 Aligned_cols=245 Identities=20% Similarity=0.200 Sum_probs=190.5
Q ss_pred cceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---
Q psy1242 255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--- 330 (540)
Q Consensus 255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--- 330 (540)
.+...+.+++..+++++.|+.|++|+...+.... ..+|.+.| ..+.|++|+..+++++.+... ..+.+...
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v----~~l~~s~dg~~l~s~~~dg~i-~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV----RHIQFTADGKTLISSSEDSVI-QVWNWQTGDYV 1038 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC----CCEEECSSSSCEEEECSSSBE-EEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce----EEEEECCCCCEEEEEcCCCEE-EEEECCCCceE
Confidence 4455667777789999999999999998765433 33565444 357899999877776544332 22222110
Q ss_pred cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242 331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410 (540)
Q Consensus 331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg 410 (540)
......-.+.++++++++. +++++.|++|++||+.+++....+ .+|.+.|++++|+| ++
T Consensus 1039 ~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~vwd~~~~~~~~~~---------------~~~~~~v~~~~~s~----d~ 1097 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVITGRIERDF---------------TCHQGTVLSCAISS----DA 1097 (1249)
T ss_dssp CCBCCSSCEEEEEECSSSE--EEEEESSSEEEEEETTTTCCCEEE---------------ECCSSCCCCEEECS----SS
T ss_pred EEecCCCcEEEEEEcCCCc--EEEEECCCcEEEEECCCCceeEEE---------------cccCCcEEEEEECC----CC
Confidence 0111222367888899875 578889999999999999988888 78999999999999 99
Q ss_pred cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe-
Q psy1242 411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL- 488 (540)
Q Consensus 411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l- 488 (540)
++|++|+.|++|++||+.. ++++..+.+|...|++++|+|++++|++|+.||.|++|+. +++.+..+
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~-----------~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDL-----------LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp SSCEEECCSSCCCEECSSS-----------SSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC
T ss_pred CEEEEEcCCCcEEEEECCC-----------cceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec
Confidence 9999999999999999876 4567788899999999999999999999999999999976 67666554
Q ss_pred --------cCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242 489 --------DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKT 539 (540)
Q Consensus 489 --------~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v 539 (540)
..|.+ .|.+++|+|+|++|++++ |.|++|++. |+.+..+. |.+.|.++
T Consensus 1167 ~~~~~~~~~~~~~--~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A 1167 PISVEEGTATHGG--WVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp CCC-------CCS--CCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCC
T ss_pred cccccccccccCc--eEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeeccCCcccEE
Confidence 45666 789999999999999885 999999987 77776665 66667655
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.9e-20 Score=221.64 Aligned_cols=247 Identities=17% Similarity=0.131 Sum_probs=185.4
Q ss_pred eecccceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
|...++.+.+.+++..+++++.|++|++|+..++.... ..+|.+.| ..+.|++|+.++++++.+.. ...+.+..
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s~~~d~~-v~vwd~~~ 688 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV----LCCAFSSDDSYIATCSADKK-VKIWDSAT 688 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSE-EEEEETTT
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCE----EEEEEecCCCEEEEEeCCCe-EEEEECCC
Confidence 44455566677777779999999999999998766433 33465443 35789999988887754332 22232221
Q ss_pred Cc-C---cceeeEEEEEEEecCC-CEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 330 NF-S---QKLRVRHNCFVTTVDS-RFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 330 ~~-~---~~~~v~~~~~~~spdg-~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
.. . ....-.+.+++|+|++ ..++++|+.|++|++||+.+++.+..+ .+|.+.|++++|+|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---------------FGHTNSVNHCRFSP 753 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE---------------CCCSSCEEEEEECS
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee---------------cCCCCCEEEEEEec
Confidence 10 0 0112237788889953 236899999999999999999988888 88999999999999
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCcccccC-------------------------------------------CCCCC
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIVG-------------------------------------------ETDTP 441 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~-------------------------------------------~~~~~ 441 (540)
++++|++|+.||+|++||+......... ....+
T Consensus 754 ----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 754 ----DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp ----STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred ----CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 9999999999999999998654211000 00011
Q ss_pred cceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEE
Q psy1242 442 TPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIA 518 (540)
Q Consensus 442 ~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~ 518 (540)
..+..+ .+|...|.+++|+|++.++++++.||.|++|+. ++..+..+.+|.. .|.+++|+|+|+.+++ +.||.|+
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEEeCCCeEE
Confidence 122222 378999999999999999999999999999976 7888999999988 7899999999999888 5689999
Q ss_pred EEecC
Q psy1242 519 AFTMN 523 (540)
Q Consensus 519 lw~~~ 523 (540)
+|++.
T Consensus 908 vw~~~ 912 (1249)
T 3sfz_A 908 VWETK 912 (1249)
T ss_dssp EEEHH
T ss_pred EEEcc
Confidence 99854
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=1.9e-20 Score=196.71 Aligned_cols=232 Identities=17% Similarity=0.199 Sum_probs=171.2
Q ss_pred CcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCccee
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQKLR 336 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~~~~ 336 (540)
++..+++++.|++|++||..++.... ..+|.+.|. ++..|+.++++|+.+... ..+.+... +. ...
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------~l~~~~~~l~sg~~dg~i-~vwd~~~~~~~~~~~-~h~ 213 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------CLQYDERVIITGSSDSTV-RVWDVNTGEMLNTLI-HHC 213 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------EEECCSSEEEEEETTSCE-EEEESSSCCEEEEEC-CCC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------EEEECCCEEEEEcCCCeE-EEEECCCCcEEEEEc-CCC
Confidence 45569999999999999987765433 334654432 333477777766544332 22222110 00 111
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
-.+.+++++ +. ++++|+.||+|++||+.+++..... ..+.+|.+.|+++++. +++|++|
T Consensus 214 ~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~------~~~l~s~ 272 (435)
T 1p22_A 214 EAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLR------------RVLVGHRAAVNVVDFD------DKYIVSA 272 (435)
T ss_dssp SCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEE------------EEECCCSSCEEEEEEE------TTEEEEE
T ss_pred CcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceee------------eEecCCCCcEEEEEeC------CCEEEEE
Confidence 235677665 44 4799999999999999987654211 1227899999999983 5799999
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA 495 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~ 495 (540)
+.|++|++||+++ ++++..+.+|...|.++++ ++.++++|+.||.|++|+. +++++.++.+|..
T Consensus 273 ~~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-- 337 (435)
T 1p22_A 273 SGDRTIKVWNTST-----------CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-- 337 (435)
T ss_dssp ETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--
T ss_pred eCCCeEEEEECCc-----------CcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--
Confidence 9999999999876 4678889999999999999 4679999999999999986 7999999999988
Q ss_pred CceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc---------EEEeee-cCCcceecC
Q psy1242 496 SPESVVMSREGVIVVN-YERGHIAAFTMN-GN---------RLRHES-HNDNLQKTA 540 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~---------~l~~~~-~~~~V~~va 540 (540)
.|.+++| ++.+|++ +.||.|++||+. ++ .+..+. |.+.|.+++
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 392 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 392 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence 7899988 7888887 568999999986 33 566554 888887763
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=6.4e-20 Score=187.87 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=150.0
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC--cCcceeeEEE
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--FSQKLRVRHN 340 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~ 340 (540)
...+.++++.|++|++||..++.......|...+ ..+.++++...++.. .....+.+... .-........
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v----~~v~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV----KDLFLSREFIVVSYG----DVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE----EEEEECSSEEEEEET----TEEEEEESSTTCCBSSCCEEEEE
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEECCCce----EEEEEcCCEEEEEEc----CEEEEEECCCCceeeEEeccCCc
Confidence 3445567888999999999877655554454332 234555555443321 11222222211 0011111233
Q ss_pred EEEEecCCCEEEEE-EecCCcEEEEEccCCeEEEEEecccceeeeee-EEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 341 CFVTTVDSRFLLAC-GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI-VQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 341 ~~~~spdg~~llas-gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~-~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
.+++++ ..++++ |+.||+|++||+.+++.....+.......... +..+.+|.+.|++++|+| +|++|+||+.
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~----~g~~l~s~s~ 215 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR----KSDMVATCSQ 215 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT----TSSEEEEEET
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC----CCCEEEEEeC
Confidence 445566 444444 78999999999997652211100000000001 334489999999999999 9999999999
Q ss_pred CCc-EEEEEcCCCcccccCCCCCCcceEEec-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-Cc--EEEEecC--
Q psy1242 419 DCT-VLLWHWNARTQSIVGETDTPTPRATLT-G-HEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GD--LLRSLDP-- 490 (540)
Q Consensus 419 Dgt-V~lWd~~~~~~~~~~~~~~~~~~~~l~-~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~--~~~~l~~-- 490 (540)
|++ |+|||+++ ++++..+. + |...|.+++|+|++++|++++.|++|++|+.. +. ....+..
T Consensus 216 d~~~v~iwd~~~-----------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 216 DGTIIRVFKTED-----------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp TCSEEEEEETTT-----------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred CCCEEEEEECCC-----------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 999 99999876 45778887 6 99999999999999999999999999999752 21 1111111
Q ss_pred ----------------CC-CCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 491 ----------------PS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 491 ----------------~~-~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
+. ...+...++|+++|+.|+++ .||.+.+|++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 00 00134679999999988885 58999999865
No 101
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=2.7e-20 Score=202.69 Aligned_cols=238 Identities=11% Similarity=0.027 Sum_probs=180.0
Q ss_pred cccceeeecCCcEEEEEccCcceEEEEcCCCC----Cc-ccCCCCcCCCCCCCCCccccC--CCCeeeccCCCCCCcccc
Q psy1242 253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYA----AS-IQSPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAPVPKR 325 (540)
Q Consensus 253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~----~~-~~~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~~~~~ 325 (540)
...+...+.+++..+++++ ++.|++|+..++ .. ....+|.+. ....+.+++ |+.++++++.+... ..+
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~---~v~~~~~sp~~~~~~l~s~~~dg~v-~vw 93 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSS---VVTTVKFSPIKGSQYLCSGDESGKV-IVW 93 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTS---CEEEEEECSSTTCCEEEEEETTSEE-EEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCc---eEEEEEECcCCCCCEEEEecCCCEE-EEE
Confidence 3344445555555577777 789999999866 32 233456533 033678999 99888877544332 222
Q ss_pred ccCC---------CcC---cceeeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEE
Q psy1242 326 HLGD---------NFS---QKLRVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQI 389 (540)
Q Consensus 326 ~~~~---------~~~---~~~~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~ 389 (540)
.+.. ... ......+.+++|+|++++ +++++.| +.|++|| +++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~~~~~-------------- 156 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWD--SGNSLGEV-------------- 156 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETT--TCCEEEEC--------------
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEE--CCCcceee--------------
Confidence 2210 000 001223788899999996 5777766 6888888 56677666
Q ss_pred eeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC---CEEEEEEcCC-CC
Q psy1242 390 IFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ---PVTSVAISAE-LG 464 (540)
Q Consensus 390 l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~v~~spd-g~ 464 (540)
.+|.+.|++++|+| ++. .+++++.|++|++||+.. .+++..+.+|.. .|++++|+|+ ++
T Consensus 157 -~~~~~~v~~~~~~~----~~~~~l~~~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 157 -SGHSQRINACHLKQ----SRPMRSMTVGDDGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp -CSCSSCEEEEEECS----SSSCEEEEEETTTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred -ecCCccEEEEEECC----CCCcEEEEEeCCCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCCC
Confidence 78999999999999 887 899999999999999765 457788899999 9999999999 99
Q ss_pred EEEEEeCCCcEEEEeC-CCcEEEEe-c---CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242 465 LVVSGSQLGPVLVHTT-FGDLLRSL-D---PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 465 ~lasgs~Dg~v~iw~~-~g~~~~~l-~---~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~ 531 (540)
++++++.||.|++|+. +++.+..+ . .|.. .|.+++|+ ++.+|+++ .|+.|++|++. ++.+..+.
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 9999999999999985 88889888 5 6777 78999999 99998884 58999999998 77777665
No 102
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=1.4e-19 Score=190.52 Aligned_cols=242 Identities=15% Similarity=0.259 Sum_probs=176.4
Q ss_pred cEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCccee
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLR 336 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~ 336 (540)
+..+++++.|++|++|+..++... ...+|.+.|. .+.++ +.++++|+.+... ..+.+.. ...+..
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~~~~~--~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~h~~- 200 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW----SSQMR--DNIIISGSTDRTL-KVWNAETGECIHTLYGHTS- 200 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE----EEEEE--TTEEEEEETTSCE-EEEETTTTEEEEEECCCSS-
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE----EEEec--CCEEEEEeCCCeE-EEEECCcCcEEEEECCCCC-
Confidence 445889999999999998776533 2334654432 23333 4444444333222 2222111 111111
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------eeEEEee
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------RIVQIIF 391 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------~~~~~l~ 391 (540)
.+.+++++ ++. +++|+.||+|++||+.+++.+..+.+|...+.+ +.+..+.
T Consensus 201 -~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 201 -TVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp -CEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred -cEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 25566654 553 789999999999999999988888888776643 4566778
Q ss_pred ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 471 (540)
+|.+.|.+++| ++.++++|+.|++|++||+++ ++++..+.+|...+.+++++ +.++++|+.
T Consensus 277 ~~~~~v~~~~~------~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 277 GHTNRVYSLQF------DGIHVVSGSLDTSIRVWDVET-----------GNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp CCSSCEEEEEE------CSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred CCCCceEEEEE------CCCEEEEEeCCCeEEEEECCC-----------CCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 99999999998 467999999999999999876 46788899999999988874 679999999
Q ss_pred CCcEEEEeC-CCcEEEEecC---CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee------ecCCcceec
Q psy1242 472 LGPVLVHTT-FGDLLRSLDP---PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE------SHNDNLQKT 539 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~---~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~------~~~~~V~~v 539 (540)
||.|++|+. +++.+..+.. |.. .|.+++|+ +.+|++ +.||.|++|++. |+.+..+ .+.+.|.++
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCCC--CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 999999986 8889999986 554 78888885 677777 568999999987 8888777 366777765
Q ss_pred C
Q psy1242 540 A 540 (540)
Q Consensus 540 a 540 (540)
+
T Consensus 414 ~ 414 (445)
T 2ovr_B 414 R 414 (445)
T ss_dssp E
T ss_pred E
Confidence 3
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.4e-20 Score=188.83 Aligned_cols=160 Identities=21% Similarity=0.150 Sum_probs=128.2
Q ss_pred EEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCcc-------
Q psy1242 339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI------- 407 (540)
Q Consensus 339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~------- 407 (540)
+.+++|+|+ +. ++++|+.|+.|++||+.++... ..+ .+|...|++++|+|...
T Consensus 104 v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 104 VNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---------------DAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp EEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEE---------------ECCTTCEEEEEECCCC--------
T ss_pred eEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEe---------------cCCCCceEEEEEcCcccccccccc
Confidence 678889999 88 4799999999999999877432 333 68999999999998100
Q ss_pred --CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeC-C
Q psy1242 408 --TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVLVHTT-F 481 (540)
Q Consensus 408 --~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~-~ 481 (540)
.++.+|++|+.|++|++||++..... ..+...+.+|...|.+++|+|+ +.+|++++.||.|++|+. +
T Consensus 168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 168 GTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 02789999999999999998763321 2356788899999999999999 899999999999999976 3
Q ss_pred Cc---EEEEecC--CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 482 GD---LLRSLDP--PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 482 g~---~~~~l~~--~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
+. ....+.. +.. .|.+++|+|+|++|++ +.||.|++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp TTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCccceeeeeccccCCC--cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 32 2333333 444 7899999999999887 578999999987
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=197.01 Aligned_cols=243 Identities=9% Similarity=0.030 Sum_probs=166.5
Q ss_pred cceeeecCCc--EEEEEccCcceEEEEcCCCCCcc-----------------------------------------cCCC
Q psy1242 255 NTYVTLHMPS--VVTVTANHQFAINRWNPDYAASI-----------------------------------------QSPS 291 (540)
Q Consensus 255 ~~~~~~~~~~--~~lvs~s~D~tv~~W~~~~~~~~-----------------------------------------~~~~ 291 (540)
++.+.+.++. ..+++++.|++|++|+....... ...+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 3344444444 56889999999999998652210 0123
Q ss_pred CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC------------cCcceeeEEEEEEEecCC-CEEEEEEecC
Q psy1242 292 YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------------FSQKLRVRHNCFVTTVDS-RFLLACGFWD 358 (540)
Q Consensus 292 ~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~spdg-~~llasgs~D 358 (540)
|...| ..+.|++|+.++++| . +.....+.+... .-....-.+.+++|+|++ + +|++|+.|
T Consensus 176 h~~~v----~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~d 248 (447)
T 3dw8_B 176 HTYHI----NSISINSDYETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSK 248 (447)
T ss_dssp CSSCC----CEEEECTTSSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETT
T ss_pred CCcce----EEEEEcCCCCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCC
Confidence 44333 357899999888887 3 333333333310 011122347889999999 6 68999999
Q ss_pred CcEEEEEccCCeE----EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242 359 NSFRVFSTDNARI----VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI 434 (540)
Q Consensus 359 gsv~iwd~~~g~~----~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~ 434 (540)
|+|++||+++++. +..+.+|.... ....+.+|...|++++|+| +|++|++++. ++|++||++..
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~-~~v~iwd~~~~---- 316 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPS---NRSFFSEIISSISDVKFSH----SGRYMMTRDY-LSVKVWDLNME---- 316 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECT----TSSEEEEEES-SEEEEEETTCC----
T ss_pred CeEEEEECcCCccccceeeEeccCCCcc---ccccccccCceEEEEEECC----CCCEEEEeeC-CeEEEEeCCCC----
Confidence 9999999998886 66773332210 0001123344999999999 9999999999 99999998751
Q ss_pred cCCCCCCcceEEeccCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC-----
Q psy1242 435 VGETDTPTPRATLTGHEQP---------------VTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG----- 493 (540)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~~---------------V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~----- 493 (540)
.+++..+.+|... +..++|+|++++|++|+.||.|++|+. +++.+ .+..+..
T Consensus 317 ------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~ 389 (447)
T 3dw8_B 317 ------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPR 389 (447)
T ss_dssp ------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTT
T ss_pred ------ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccc
Confidence 2456677777542 334899999999999999999999987 55544 3332210
Q ss_pred --------------------------CCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 494 --------------------------FASPESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 494 --------------------------~~~v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
...|..++|+|+|.+||++..+.+++|+-+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred cccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 115788999999999999888889999743
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.9e-20 Score=197.16 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=123.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-------EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-------VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-------~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
+.+++|||||++ ||+|+.||+|+|||+.+++. +.++..|. .+|.+.|.+++|+| +|
T Consensus 132 v~svafSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~-----------~gh~~~V~sVawSP----dg- 194 (588)
T 2j04_A 132 YHCFEWNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD-----------AGSKDWVTHIVWYE----DV- 194 (588)
T ss_dssp EEEEEECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC-----------TTCCCCEEEEEEET----TE-
T ss_pred EEEEEEcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeeccc-----------ccccccEEEEEEcC----Cc-
Confidence 568999999995 79999999999999998753 45553333 57889999999999 88
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEec-
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLD- 489 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~- 489 (540)
+++++.|++|++|++..... .+..+++ .+|...|.+++|+ ++.+|+++ +++|++|+..+.....+.
T Consensus 195 -Laass~D~tVrlWd~~~~~~--------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~ 262 (588)
T 2j04_A 195 -LVAALSNNSVFSMTVSASSH--------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT 262 (588)
T ss_dssp -EEEEETTCCEEEECCCSSSS--------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC
T ss_pred -EEEEeCCCeEEEEECCCCcc--------ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc
Confidence 88999999999999876321 1134566 4888999999999 68999997 699999998665553444
Q ss_pred CCCCCCCceEEEE--eeCCCEEEEec-CCeEEEEecC
Q psy1242 490 PPSGFASPESVVM--SREGVIVVNYE-RGHIAAFTMN 523 (540)
Q Consensus 490 ~~~~~~~v~~l~f--spdg~~l~s~~-dg~I~lw~~~ 523 (540)
+|.. .|..++| +|+|..++++. +|+ ++|..+
T Consensus 263 gh~~--~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 263 GSLE--NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCS--CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCCc--eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 7777 7899999 99999999865 788 999876
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=5e-20 Score=193.48 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=157.8
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-------cc
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-------QK 334 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-------~~ 334 (540)
+...+++++.|++|++||..++..... .+|.+.+. .+.+ ++..+++|+.+... ..+.+..... ..
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~l~~--~~~~l~s~s~dg~i-~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRF--NNGMMVTCSKDRSI-AVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE----EEEC--CTTEEEEEETTSCE-EEEECSSSSCCEEEEEECC
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE----EEEE--cCCEEEEeeCCCcE-EEEeCCCCCCceeeeEecC
Confidence 556799999999999999987664332 24543332 2333 33344444333222 2222221110 01
Q ss_pred eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
....+.++++ +++. +++|+.||+|++||+++++.+..+ .+|.+.|.+++++ +.+++
T Consensus 255 ~~~~v~~~~~--~~~~-l~s~~~dg~i~vwd~~~~~~~~~~---------------~~~~~~v~~~~~~------~~~l~ 310 (435)
T 1p22_A 255 HRAAVNVVDF--DDKY-IVSASGDRTIKVWNTSTCEFVRTL---------------NGHKRGIACLQYR------DRLVV 310 (435)
T ss_dssp CSSCEEEEEE--ETTE-EEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEEE------TTEEE
T ss_pred CCCcEEEEEe--CCCE-EEEEeCCCeEEEEECCcCcEEEEE---------------cCCCCcEEEEEeC------CCEEE
Confidence 1123566665 6774 799999999999999999998888 7899999999984 47999
Q ss_pred EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc---------E
Q psy1242 415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD---------L 484 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~---------~ 484 (540)
+|+.||+|++||+++ ++++..+.+|...|.++++ ++.+|++|+.||.|++|+. ++. +
T Consensus 311 ~g~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 311 SGSSDNTIRLWDIEC-----------GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp EEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred EEeCCCeEEEEECCC-----------CCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 999999999999876 4678899999999999998 7889999999999999975 333 7
Q ss_pred EEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCc
Q psy1242 485 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN 525 (540)
Q Consensus 485 ~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~ 525 (540)
+..+.+|.+ .|.+++| ++.+|+++ .||.|++|++...
T Consensus 378 ~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 378 LRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred eeeccCCCC--CeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 889999988 7899999 77788874 5899999998743
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.85 E-value=5.5e-20 Score=184.02 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=132.1
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.+.|++|+|++++ |++|+.||+|++||+.++. ....+ .+|.+.|++++|+|. .++++|
T Consensus 13 ~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~--~d~~~l 74 (351)
T 3f3f_A 13 LVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSW---------------RAHDSSIVAIDWASP--EYGRII 74 (351)
T ss_dssp CEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEE---------------ECCSSCEEEEEECCG--GGCSEE
T ss_pred ceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcceeccee---------------ccCCCcEEEEEEcCC--CCCCEE
Confidence 3788999999995 7999999999999998763 44444 789999999999981 028999
Q ss_pred EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeC-CCc-------
Q psy1242 414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTT-FGD------- 483 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~-~g~------- 483 (540)
++|+.|++|++||++...... .....+++..+.+|...|.+++|+|+ +.++++++.||.|++|+. +++
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEEC--SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTT--SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEcCCCeEEEEecCCCcccc--cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence 999999999999997643210 00111457788899999999999999 999999999999999974 222
Q ss_pred -----------------------------------------------------EEEEecCCCCCCCceEEEEeeCC----
Q psy1242 484 -----------------------------------------------------LLRSLDPPSGFASPESVVMSREG---- 506 (540)
Q Consensus 484 -----------------------------------------------------~~~~l~~~~~~~~v~~l~fspdg---- 506 (540)
.+..+.+|.. .|.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSS
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcc
Confidence 1445566766 78999999998
Q ss_pred CEEEE-ecCCeEEEEecCC
Q psy1242 507 VIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 507 ~~l~s-~~dg~I~lw~~~g 524 (540)
++|++ +.||.|++|++..
T Consensus 231 ~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EEEEEEETTSCEEEEEEEE
T ss_pred eEEEEEcCCCeEEEEeCCC
Confidence 77887 5689999999873
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.6e-20 Score=211.64 Aligned_cols=230 Identities=12% Similarity=0.106 Sum_probs=156.5
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCccee
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR 336 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (540)
.+.+.+++..++|++.|++||+||..++..... ..+.. ...+.+.. ...
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-------------------~~~~~--------~l~~~~~~----~h~ 488 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-------------------ASFEV--------NLSRTLNK----AKE 488 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-------------------BCEEE--------EHHHHTTC----SSS
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCC-------------------ceEEe--------echhhcCC----CCC
Confidence 345566788999999999999999876421100 00000 00011110 112
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEE----------Eeccc-------ce-----------e--eeee
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQI----------IFGHY-------GV-----------V--TSRI 386 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~----------l~~~~-------~~-----------v--~~~~ 386 (540)
..+.+++|+|||+. ||+|+.||+|+||++.+++.... +.... .. + .-++
T Consensus 489 ~~V~svafspdg~~-LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 489 LAVDKISFAAETLE-LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp CCEEEEEEETTTTE-EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CceeEEEecCCCCe-EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 24788999999995 79999999999999987642100 00000 00 0 0134
Q ss_pred EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEc-----
Q psy1242 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAIS----- 460 (540)
Q Consensus 387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s----- 460 (540)
+.++.+|.+.|++|+|+| || +|++|+.|++|+|||++...... ...+..+. +|...|++|+|+
T Consensus 568 ~~~l~~h~~~V~svafSp----dG-~lAsgs~D~tv~lwd~~~~~~~~------~~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSN----IG-FVGIAYAAGSLMLIDRRGPAIIY------MENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp EEEECCCSCSEEEEEECB----TS-EEEEEETTSEEEEEETTTTEEEE------EEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred eEEEEcCCCcEEEEEecC----Cc-EEEEEeCCCcEEEEECCCCeEEE------EeehhHhccccccceEEEEEEEEecC
Confidence 667789999999999999 99 99999999999999986521000 00012233 899999999999
Q ss_pred CCC---CEEEEEeCCCcEEEEeC----CCcEEEEecCCCC---CCCceEEE-Ee----------------------eCCC
Q psy1242 461 AEL---GLVVSGSQLGPVLVHTT----FGDLLRSLDPPSG---FASPESVV-MS----------------------REGV 507 (540)
Q Consensus 461 pdg---~~lasgs~Dg~v~iw~~----~g~~~~~l~~~~~---~~~v~~l~-fs----------------------pdg~ 507 (540)
||| ++|++|+.||+|++|+. +|+++..+.+|.. ..+|.+++ |+ ++|.
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 716 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI 716 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence 886 79999999999999974 7888888876631 11566776 66 5676
Q ss_pred EEEEecCCeEEEEecC-CcEEEee
Q psy1242 508 IVVNYERGHIAAFTMN-GNRLRHE 530 (540)
Q Consensus 508 ~l~s~~dg~I~lw~~~-g~~l~~~ 530 (540)
+|+++ +..|++|++. ++.+...
T Consensus 717 ~l~~~-~~~ir~~~~~~~k~~~k~ 739 (902)
T 2oaj_A 717 VLITG-FDDIRLITLGKSKSTHKG 739 (902)
T ss_dssp EEEEC-SSEEEEECTTCCCEEEEE
T ss_pred EEEEe-ccceEEEeCccccceeeE
Confidence 77776 7799999986 6666444
No 109
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.8e-20 Score=196.32 Aligned_cols=227 Identities=11% Similarity=0.105 Sum_probs=164.0
Q ss_pred EcCCCCCcccC-CCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCC-----Cc----CcceeeEEEEEEEecC
Q psy1242 279 WNPDYAASIQS-PSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGD-----NF----SQKLRVRHNCFVTTVD 347 (540)
Q Consensus 279 W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~spd 347 (540)
|++........ .+|.+.| ..+.+++ |+.++++|+.+... ..+.+.. .+ .......+.+++|+|+
T Consensus 48 w~~~g~~~~~~~~~h~~~V----~~~~~s~~~~~~l~s~s~dg~v-~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 122 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSI----TSSAVSPGETPYLITGSDQGVI-KIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN 122 (437)
T ss_dssp GGCCCCEEEEECTTTTSCE----EEEEEECSSSCEEEEEETTSEE-EEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT
T ss_pred ccccceEEeeeccCCCCce----EEEEECCCCCCEEEEecCCceE-EEeECcccccCcccceeeeccCCCCEEEEEEeCC
Confidence 77654333333 3455443 3677899 88888877644433 2222211 11 1012234788999999
Q ss_pred CCEEEEEEecCCcEEEEEcc---CCeEEEEEecccceeeeeeEEEee--c--cCcceEEEE--eccCccCCCcEEEEEeC
Q psy1242 348 SRFLLACGFWDNSFRVFSTD---NARIVQIIFGHYGVVTSRIVQIIF--G--HYGVVTCLS--RSECNITADCFIASGSA 418 (540)
Q Consensus 348 g~~llasgs~Dgsv~iwd~~---~g~~~~~l~~~~~~v~~~~~~~l~--~--h~~~Vt~l~--~sp~~~~dg~~l~sgs~ 418 (540)
++. |++|+.||+|++||++ +++......+| .+..+. . +...+.++. +++ ++.+|++|+.
T Consensus 123 ~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 190 (437)
T 3gre_A 123 FDA-FAVSSKDGQIIVLKVNHYQQESEVKFLNCE-------CIRKINLKNFGKNEYAVRMRAFVNE----EKSLLVALTN 190 (437)
T ss_dssp SSE-EEEEETTSEEEEEEEEEEEETTEEEEEEEE-------EEEEEEGGGGSSCCCEEEEEEEECS----SCEEEEEEET
T ss_pred CCE-EEEEeCCCEEEEEEeccccCCceeeccccc-------eeEEEEccCcccccCceEEEEEEcC----CCCEEEEEeC
Confidence 995 7999999999999994 66666655333 111111 2 667788888 557 8999999999
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec-CCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD-PPSGF 494 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~-~~~~~ 494 (540)
|++|++||++. .+++..+.+ |...|++++|+|++.+|++|+.||+|++|+. +++++.++. .|..
T Consensus 191 d~~i~iwd~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 258 (437)
T 3gre_A 191 LSRVIIFDIRT-----------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA- 258 (437)
T ss_dssp TSEEEEEETTT-----------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-
T ss_pred CCeEEEEeCCC-----------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-
Confidence 99999999876 457788887 8999999999999999999999999999976 788888886 5555
Q ss_pred CCceEEEEe----eCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCc
Q psy1242 495 ASPESVVMS----REGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDN 535 (540)
Q Consensus 495 ~~v~~l~fs----pdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~ 535 (540)
+|.+++|+ +++.+|+++ .||.|++||++ ++.+..+. |...
T Consensus 259 -~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 259 -PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp -EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred -ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 78999665 568788885 57999999997 77777665 4433
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.1e-19 Score=176.90 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=152.8
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeee-----------------------eeEEEee
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTS-----------------------RIVQIIF 391 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~-----------------------~~~~~l~ 391 (540)
.+.+++|+|+++. +++|+.|+.+++|++... +.+..+.+|...+.+ .....+.
T Consensus 61 ~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 139 (313)
T 3odt_A 61 FLNSVCYDSEKEL-LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQ 139 (313)
T ss_dssp CEEEEEEETTTTE-EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEE
T ss_pred cEEEEEECCCCCE-EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecc
Confidence 3788899999995 799999999999998754 556677777766643 4556678
Q ss_pred ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEe
Q psy1242 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGS 470 (540)
Q Consensus 392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs 470 (540)
+|...|.+++++|. +++.+++++.|+.|++||.. +....+.. |...|.+++|+|++. +++++
T Consensus 140 ~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 140 AHNASVWDAKVVSF---SENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp CCSSCEEEEEEEET---TTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred cCCCceeEEEEccC---CCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 89999999999874 78899999999999999932 35667776 999999999999998 89999
Q ss_pred CCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 471 QLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 471 ~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
.||.|++|+. +++.+..+..|.. .|.+++|+|+|.+++++.||.|++|++. ++.+..+. |.+.|.+++
T Consensus 203 ~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 203 NDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273 (313)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred CCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence 9999999976 7899999998888 7899999999976666889999999987 77777776 777777663
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.3e-20 Score=192.79 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=141.5
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEcc--CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTD--NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~--~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
.+.+++|+|++++|+++|+.||+|+|||+. +++.+..+.. .+|...|++++|+| ++++|++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~sp----~~~~l~~ 166 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-------------FCFSKRPNAISIAE----DDTTVII 166 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-------------EECSSCEEEEEECT----TSSEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-------------ccCCCCceEEEEcC----CCCEEEE
Confidence 378999999999867999999999999999 8888877721 25778999999999 9999999
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeC-CCcEEEE-ecC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVLVHTT-FGDLLRS-LDP 490 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~-~g~~~~~-l~~ 490 (540)
|+.|+.|++|++...... ..+...+.+|...|++++|+|+ +++|++|+.|++|++|+. +++.+.. +.+
T Consensus 167 ~~~~g~v~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEE-------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EETTSEEEEEETTSCCCS-------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EeCCCcEEEEecCCcccc-------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 999999999998763311 1144577889999999999999 999999999999999976 6777776 557
Q ss_pred CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
|.. .|.+++|+ +|++|++ +.|+.|++||+. |+.+..+.
T Consensus 240 h~~--~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 240 HKH--FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CSS--CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CCC--ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 777 78999999 9999998 468999999987 77777765
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.84 E-value=1.8e-19 Score=184.61 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=114.4
Q ss_pred EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------eeEEEeeccCc---------ceE
Q psy1242 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------RIVQIIFGHYG---------VVT 398 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------~~~~~l~~h~~---------~Vt 398 (540)
.+++.++++.++++|+.|++|++||..+++.+..+. +...|.+ ..+..+.-... ...
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence 344567777665677778888888888888777663 1112211 00000000000 112
Q ss_pred EEEeccCccCCCcEEEE--EeCCCcEEEEEcCCCcccccCC----CCCCcc-eEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 399 CLSRSECNITADCFIAS--GSADCTVLLWHWNARTQSIVGE----TDTPTP-RATLTGHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~s--gs~DgtV~lWd~~~~~~~~~~~----~~~~~~-~~~l~~h~~~V~~v~~spdg~~lasgs~ 471 (540)
.+++++ ..++. |+.||+|++||+.........+ .....+ +..+.+|...|++++|+|+|.+|++|+.
T Consensus 142 ~~~~s~------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~ 215 (355)
T 3vu4_A 142 VCEFSN------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ 215 (355)
T ss_dssp EEEEET------TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEc------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence 223332 24444 5678888888876522000000 000123 7889999999999999999999999999
Q ss_pred CCc-EEEEeC-CCcEEEEec-C-CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 472 LGP-VLVHTT-FGDLLRSLD-P-PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 472 Dg~-v~iw~~-~g~~~~~l~-~-~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
||+ |++|+. +++++.++. + |.. .|.+++|+|+|++|++ +.|++|++|+++
T Consensus 216 d~~~v~iwd~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 216 DGTIIRVFKTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp TCSEEEEEETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCCEEEEEECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 999 999976 799999998 4 776 7999999999999998 468999999986
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.83 E-value=3.8e-19 Score=187.11 Aligned_cols=230 Identities=18% Similarity=0.293 Sum_probs=167.5
Q ss_pred EEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---cceeeEE
Q psy1242 265 VVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QKLRVRH 339 (540)
Q Consensus 265 ~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~~~v~~ 339 (540)
..+++++.|++|++|+..++..... .+|...+. .+.+ ++..+++|+.+... ..+.+.... . ......+
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~~~~--~~~~l~s~s~dg~i-~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR----CMHL--HEKRVVSGSRDATL-RVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEE--ETTEEEEEETTSEE-EEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE----EEEe--cCCEEEEEeCCCEE-EEEECCCCcEEEEEcCCcccE
Confidence 3688999999999999987654332 34553332 2333 44445444333221 222221100 0 0011225
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------eeEEEeeccC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------RIVQIIFGHY 394 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------~~~~~l~~h~ 394 (540)
.++++ +++. +++|+.||.|++||+++++.+..+.+|...+.+ +.+..+.+|.
T Consensus 243 ~~~~~--~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 319 (445)
T 2ovr_B 243 RCVQY--DGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319 (445)
T ss_dssp EEEEE--CSSC-EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred EEEEE--CCCE-EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc
Confidence 66665 7774 789999999999999999999999888876643 4567778999
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeC
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~ 471 (540)
..+.+++++ +++|++|+.||+|++||++. ++++..+.+ |...|++++|+ +.++++|+.
T Consensus 320 ~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 380 (445)
T 2ovr_B 320 SLTSGMELK------DNILVSGNADSTVKIWDIKT-----------GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD 380 (445)
T ss_dssp SCEEEEEEE------TTEEEEEETTSCEEEEETTT-----------CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET
T ss_pred ccEEEEEEe------CCEEEEEeCCCeEEEEECCC-----------CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC
Confidence 999988874 46999999999999999876 456777776 88899999995 579999999
Q ss_pred CCcEEEEeC-CCcEEEEe-----cCCCCCCCceEEEEeeCCCEEEEe-cCCe----EEEEecCCc
Q psy1242 472 LGPVLVHTT-FGDLLRSL-----DPPSGFASPESVVMSREGVIVVNY-ERGH----IAAFTMNGN 525 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l-----~~~~~~~~v~~l~fspdg~~l~s~-~dg~----I~lw~~~g~ 525 (540)
||.|++|+. +++.+..+ ..+.+ .|.+++|+|+|.+++++ .||+ |.+||.+..
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCc--eEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999976 78888887 34455 78999999999999985 4676 999998753
No 114
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.83 E-value=1.8e-19 Score=203.42 Aligned_cols=235 Identities=13% Similarity=0.170 Sum_probs=180.0
Q ss_pred ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242 254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS 332 (540)
Q Consensus 254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~ 332 (540)
+++.+.+.+++..+++++.|++|++|+..++..... .+|.+.+ ..+.|++|+..+++++.+... ..+.+.....
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~~~dg~i-~vw~~~~~~~ 131 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI----RSIAVHPTKPYVLSGSDDLTV-KLWNWENNWA 131 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE----EEEEECSSSSEEEEEETTSEE-EEEEGGGTSE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE----EEEEEeCCCCEEEEEcCCCEE-EEEECCCCce
Confidence 344455666666799999999999999987664433 3355333 357899999777766543322 2222221100
Q ss_pred -----cceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 333 -----QKLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 333 -----~~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
......+.+++|+| ++. ++++|+.||+|++||+.+++....+. .+|...|.+++|+|.
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~--------------~~~~~~v~~~~~~~~- 195 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLT--------------TGQERGVNYVDYYPL- 195 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEE--------------CCCTTCCCEEEECCS-
T ss_pred EEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEe--------------cCCCCCEEEEEEEEC-
Confidence 01112378889999 666 58999999999999998887766661 234488999999872
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
.++.+|++|+.||+|++||+.. ++++..+.+|...|.+++|+|++.++++++.||.|++|+. +++.+
T Consensus 196 -~~~~~l~~~~~dg~i~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 196 -PDKPYMITASDDLTIKIWDYQT-----------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp -TTCCEEEEECTTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred -CCCCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 2678999999999999999876 4577888999999999999999999999999999999976 78899
Q ss_pred EEecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecC
Q psy1242 486 RSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMN 523 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~ 523 (540)
..+..+.. .+.+++|+|+|. +++++.++.+.+|++.
T Consensus 264 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 264 KTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp EEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred EEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 99998877 789999999998 6788888888888764
No 115
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.82 E-value=1.6e-18 Score=182.94 Aligned_cols=179 Identities=21% Similarity=0.242 Sum_probs=147.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++|++++ ++++|+.||+|++||+++++.+..+ .+|.+.|++++|++. .++.+|++|+.
T Consensus 165 V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~---------------~~h~~~v~~l~~~~~--~~~~~l~s~s~ 225 (464)
T 3v7d_B 165 VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF---------------EGHNSTVRCLDIVEY--KNIKYIVTGSR 225 (464)
T ss_dssp EEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEEEES--SSCEEEEEEET
T ss_pred EEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEE---------------CCCCCccEEEEEecC--CCCCEEEEEcC
Confidence 6888889888 4799999999999999999988888 789999999999841 17789999999
Q ss_pred CCcEEEEEcCCCcccccCC------------CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 419 DCTVLLWHWNARTQSIVGE------------TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~------------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
|++|++||+.......... ......+..+.+|...|.++ ++++.++++|+.||.|++|+. +++.+
T Consensus 226 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~ 303 (464)
T 3v7d_B 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL 303 (464)
T ss_dssp TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999987643211000 00112366788999999887 578899999999999999976 88899
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va 540 (540)
..+.+|.. .|.+++|+|+|++++++ .||.|++||+. |+.+..+. |.+.|.+++
T Consensus 304 ~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 304 YILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp EEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 99999988 78999999999999885 68999999986 88888775 888887763
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=1.1e-18 Score=179.62 Aligned_cols=233 Identities=9% Similarity=0.045 Sum_probs=168.3
Q ss_pred EEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC-----CcCcceeeE
Q psy1242 265 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD-----NFSQKLRVR 338 (540)
Q Consensus 265 ~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~-----~~~~~~~v~ 338 (540)
.++++++.|++|++||..+++......+.. ....+.+++|+..+ ++++.+. ....+.+.. .+.... .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~d~-~i~v~d~~~~~~~~~~~~~~--~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIATVPAGS--S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTEEEEEEECSS--S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC----CcceEEECCCCCEEEEECCCCC-eEEEEECCCCeEEEEEECCC--C
Confidence 458899999999999998766444333221 12467889999644 4442221 112222211 011111 3
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs 417 (540)
+.+++|+|++++++++++.|+.|++||+.+++.+..+ .. ...+.+++|+| +|+.| ++++
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~---------------~~-~~~~~~~~~s~----dg~~l~~~~~ 135 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---------------KT-GKSPLGLALSP----DGKKLYVTNN 135 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------EC-SSSEEEEEECT----TSSEEEEEET
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE---------------eC-CCCcceEEECC----CCCEEEEEeC
Confidence 6788999999987788888899999999999888777 43 45689999999 89877 7888
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDLLRSLDPPSGFA 495 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~~~~l~~~~~~~ 495 (540)
.|+.|++||+.+ ++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++|+. +++.+..+..+.
T Consensus 136 ~~~~v~~~d~~~-----------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--- 200 (391)
T 1l0q_A 136 GDKTVSVINTVT-----------KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--- 200 (391)
T ss_dssp TTTEEEEEETTT-----------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---
T ss_pred CCCEEEEEECCC-----------CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC---
Confidence 899999999876 3456666655 457999999999877 67788999999986 677777776543
Q ss_pred CceEEEEeeCCCEEEEe----cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 496 SPESVVMSREGVIVVNY----ERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~----~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
.+.+++|+|+|++|+++ .++.|++||+. ++.+..+.....+.++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 249 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI 249 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence 57899999999988874 47999999987 6666666544444443
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.82 E-value=3.5e-19 Score=183.18 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=157.1
Q ss_pred CcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCC-----cC------------
Q psy1242 272 HQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDN-----FS------------ 332 (540)
Q Consensus 272 ~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~-----~~------------ 332 (540)
.+.++++|+....... ...+|.+.| ..+.+++ |+.++++|+.+... ..+.+... +.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGI----NTLDIEPVEGRYMLSGGSDGVI-VLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCE----EEEEECTTTCCEEEEEETTSCE-EEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred ccCcceeeccccCcceeeeeccCCcE----EEEEEecCCCCEEEEEcCCCeE-EEEECCCCcccceEecccccccccccc
Confidence 3455677776544422 233455333 3577888 88877777544332 22222211 00
Q ss_pred cceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 333 QKLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 333 ~~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
....-.+.+++|+| ++. +|++|+.||.|++||+.+++....+ .+...+.+++++|.. .++.
T Consensus 96 ~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~ 157 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTG-MFTSSSFDKTLKVWDTNTLQTADVF----------------NFEETVYSHHMSPVS-TKHC 157 (408)
T ss_dssp TCCSSCEEEEEECTTCTT-CEEEEETTSEEEEEETTTTEEEEEE----------------ECSSCEEEEEECSSC-SSCC
T ss_pred ccCCCcEEEEEEccCCCc-EEEEEeCCCeEEEeeCCCCccceec----------------cCCCceeeeEeecCC-CCCc
Confidence 01223478888999 555 5899999999999999999888776 377889999998821 1344
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCc-EEEEe
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-FGD-LLRSL 488 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~g~-~~~~l 488 (540)
++++|+.|+.|++||++. ++++..+.+|...|++++|+|++. ++++|+.||.|++|+. ++. .+..+
T Consensus 158 ~~~~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKS-----------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp EEEEEESSSSEEEEESSS-----------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred EEEEEcCCCeEEEEeCCC-----------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence 999999999999999876 456788899999999999999998 5899999999999976 332 44444
Q ss_pred ---------------cCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242 489 ---------------DPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 489 ---------------~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~ 523 (540)
..|.. .|.+++|+|+|++|++ +.||.|++|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34555 7899999999999888 468999999976
No 118
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.82 E-value=1e-18 Score=175.84 Aligned_cols=230 Identities=10% Similarity=-0.052 Sum_probs=164.2
Q ss_pred cceeeecCCcE-EEEEccCcceEEEEcC-CCCCcccCCC--CcCCCCCCCCCccccCCCCeeeccCCCCCCcc----c--
Q psy1242 255 NTYVTLHMPSV-VTVTANHQFAINRWNP-DYAASIQSPS--YAETPGSPPGNLPLTLDPILTHPTSNNNAPVP----K-- 324 (540)
Q Consensus 255 ~~~~~~~~~~~-~lvs~s~D~tv~~W~~-~~~~~~~~~~--~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~----~-- 324 (540)
++.+.+.++.. .+++++.|+.|++|+. .+.......+ |...+ ..+.+++ +.++++++.+..... .
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v----~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI----CRICKYG-DDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCE----EEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCce----EEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence 34444555555 6899999999999999 7766544445 55333 2466777 655555543322210 0
Q ss_pred -------cccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeE--EEEEecccceeeeeeEEEeeccC
Q psy1242 325 -------RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARI--VQIIFGHYGVVTSRIVQIIFGHY 394 (540)
Q Consensus 325 -------~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~--~~~l~~~~~~v~~~~~~~l~~h~ 394 (540)
.+....+. ....+.++++++++ +++|+.|+.|++||+++ +.. .... ..|.
T Consensus 134 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~ 193 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTK--VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEE---------------SGLK 193 (342)
T ss_dssp TBCEEEEESCSSSSS--SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEE---------------CSCS
T ss_pred cccccccCCeeeEEe--eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeee---------------cCCC
Confidence 11111122 22346788888877 68888999999999987 543 2222 5788
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC---------CEEEEEEcCCCCE
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ---------PVTSVAISAELGL 465 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~---------~V~~v~~spdg~~ 465 (540)
..|++++|+|. +++++++|+.||.|++|+++..... ...++...+.+|.. .|.+++|+|++++
T Consensus 194 ~~i~~i~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 265 (342)
T 1yfq_A 194 YQIRDVALLPK---EQEGYACSSIDGRVAVEFFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp SCEEEEEECSG---GGCEEEEEETTSEEEEEECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred CceeEEEECCC---CCCEEEEEecCCcEEEEEEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence 89999999972 3789999999999999998763100 01246677777765 9999999999999
Q ss_pred EEEEeCCCcEEEEeC-CCcEEEEecCC-CCCCCceEEEEeeCCCEEEE-ecCCe-EEEEe
Q psy1242 466 VVSGSQLGPVLVHTT-FGDLLRSLDPP-SGFASPESVVMSREGVIVVN-YERGH-IAAFT 521 (540)
Q Consensus 466 lasgs~Dg~v~iw~~-~g~~~~~l~~~-~~~~~v~~l~fspdg~~l~s-~~dg~-I~lw~ 521 (540)
|++|+.||.|++|+. +++.+..+..| .. +|.+++ |+|++|++ +.||. .+.|.
T Consensus 266 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence 999999999999987 78899999988 77 788988 99999988 56787 44443
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.81 E-value=6.5e-19 Score=185.01 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=142.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
+.+++|+|++..+|++|+.||+|++|++.++... ..+ .....+.+|...|.+++|+|. ++..|++++
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~h~~~v~~v~~~p~---~~~~l~s~~ 251 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI---------DAKNIFTGHTAVVEDVAWHLL---HESLFGSVA 251 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE---------ECSEEECCCSSCEEEEEECSS---CTTEEEEEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee---------ccceeecCCCCCEeeeEEeCC---CCCEEEEEe
Confidence 6788999999845799999999999999874321 000 011233789999999999994 578999999
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-C-CcEEEEecCCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-F-GDLLRSLDPPSGF 494 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~-g~~~~~l~~~~~~ 494 (540)
.|+.|++||++.... .+++..+.+|...|++++|+|++. ++++|+.||.|++|+. + +..+..+..|..
T Consensus 252 ~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~- 322 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNT--------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD- 322 (430)
T ss_dssp TTSEEEEEETTCSCS--------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-
T ss_pred CCCeEEEEECCCCCC--------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-
Confidence 999999999986321 246777889999999999999987 7899999999999976 3 567888888887
Q ss_pred CCceEEEEeeCCC-EEEE-ecCCeEEEEecCC---------------cEEEeee-cCCcceecC
Q psy1242 495 ASPESVVMSREGV-IVVN-YERGHIAAFTMNG---------------NRLRHES-HNDNLQKTA 540 (540)
Q Consensus 495 ~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g---------------~~l~~~~-~~~~V~~va 540 (540)
.|.+++|+|+++ +|++ +.|+.|++|++.. .++.... |.+.|++++
T Consensus 323 -~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 385 (430)
T 2xyi_A 323 -EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 385 (430)
T ss_dssp -CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred -CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence 789999999995 5665 5789999999874 5555553 777787653
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.6e-19 Score=201.81 Aligned_cols=204 Identities=18% Similarity=0.121 Sum_probs=151.3
Q ss_pred cceeeecCC--cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242 255 NTYVTLHMP--SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS 332 (540)
Q Consensus 255 ~~~~~~~~~--~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~ 332 (540)
++.+.+.++ +..++|++.|++|++|+..++... ....+..+
T Consensus 56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-----------------------------------~~~~~~~h-- 98 (753)
T 3jro_A 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-----------------------------------QIAVHAVH-- 98 (753)
T ss_dssp EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-----------------------------------EEEEECCC--
T ss_pred eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-----------------------------------ccccccCC--
Confidence 334444443 566999999999999997542100 00011111
Q ss_pred cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCcc-
Q psy1242 333 QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI- 407 (540)
Q Consensus 333 ~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~- 407 (540)
...+.+++|+|+ ++ ++++|+.||+|++||+.++.. ...+ .+|...|++++|+|...
T Consensus 99 ---~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~---------------~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 99 ---SASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---------------DAHAIGVNSASWAPATIE 159 (753)
T ss_dssp ---SSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEE---------------ECCSSCEEEEEECCCC--
T ss_pred ---CCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEe---------------ecCCCceEEEEecCcccc
Confidence 112678889999 88 479999999999999987743 2333 68999999999998100
Q ss_pred --------CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEE
Q psy1242 408 --------TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVL 476 (540)
Q Consensus 408 --------~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~ 476 (540)
.++..|++|+.||+|++||++..... ..+...+.+|...|++++|+|+ +.++++|+.||.|+
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTE-------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCccc-------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 02789999999999999998764321 2466788999999999999999 89999999999999
Q ss_pred EEeC-CCc-----EEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 477 VHTT-FGD-----LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 477 iw~~-~g~-----~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
+|+. +++ .+.....+.. .|.+++|+|+|++|+++ .||.|++|+++
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSS--CCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EecCCCCCCcceeEEeccCCCCC--ceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 9975 332 2222333555 78999999999999884 68999999987
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.80 E-value=7.8e-19 Score=177.76 Aligned_cols=237 Identities=11% Similarity=0.038 Sum_probs=152.5
Q ss_pred ecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccc--cCCCCeeeccCCCCCCccccccCC
Q psy1242 252 VTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL--TLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~--s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
...++...+.+++..+++++.|++|++|+..+........|...+. .+.+ ++++.++++++.+.. ...+.+..
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~ 160 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK----TIHWIKAPNYSCVMTGSWDKT-LKFWDTRS 160 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE----EEEEEECSSCEEEEEEETTSE-EEEECSSC
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE----EEEEEeCCCCCEEEEccCCCc-EEEEECCC
Confidence 3344455566666679999999999999998766544444543332 3445 566655554432222 12222211
Q ss_pred C-cCcceee--EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 330 N-FSQKLRV--RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 330 ~-~~~~~~v--~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
. ....... .+.++.+. +.. +++++.|+.+++|+++......... ...+...+.++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-- 222 (368)
T 3mmy_A 161 SNPMMVLQLPERCYCADVI--YPM-AVVATAERGLIVYQLENQPSEFRRI-------------ESPLKHQHRCVAIFK-- 222 (368)
T ss_dssp SSCSEEEECSSCEEEEEEE--TTE-EEEEEGGGCEEEEECSSSCEEEEEC-------------CCSCSSCEEEEEEEE--
T ss_pred CcEEEEEecCCCceEEEec--CCe-eEEEeCCCcEEEEEeccccchhhhc-------------cccccCCCceEEEcc--
Confidence 0 0000110 13333333 333 4566667777777776544332220 023445566666665
Q ss_pred cCCCc----EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------------CEEEEEEcCCCCEEEEEe
Q psy1242 407 ITADC----FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------------PVTSVAISAELGLVVSGS 470 (540)
Q Consensus 407 ~~dg~----~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------------~V~~v~~spdg~~lasgs 470 (540)
++. .+++|+.|+.|++|+++.... ..++..+.+|.. .|++++|+|++++|++|+
T Consensus 223 --~~~~~~~~~~~~~~dg~i~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 223 --DKQNKPTGFALGSIEGRVAIHYINPPNP--------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp --CTTSCEEEEEEEETTSEEEEEESSCSCH--------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred --cCCCCCCeEEEecCCCcEEEEecCCCCc--------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 333 399999999999999986431 135667777766 799999999999999999
Q ss_pred CCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCe---EEEEecC
Q psy1242 471 QLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGH---IAAFTMN 523 (540)
Q Consensus 471 ~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~---I~lw~~~ 523 (540)
.||.|++|+. +++++..+..|.. +|.+++|+|+|++|+++ +|+. +.+|+.+
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred cCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEEEecccccccccccCCC
Confidence 9999999976 7889999998887 88999999999999985 4554 3445444
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.80 E-value=1.1e-17 Score=172.01 Aligned_cols=224 Identities=9% Similarity=0.061 Sum_probs=164.5
Q ss_pred EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCCC-----cCcceeeEE
Q psy1242 266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDN-----FSQKLRVRH 339 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~~-----~~~~~~v~~ 339 (540)
++++++.|++|++||..+++......+.. ....+.+++|+..+ ++++.. .....+.+... +... ..+
T Consensus 46 l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~--~~~ 118 (391)
T 1l0q_A 46 VYVANAHSNDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMAS-STLSVIDTTSNTVAGTVKTG--KSP 118 (391)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS--SSE
T ss_pred EEEECCCCCeEEEEECCCCeEEEEEECCC----CccceEECCCCCEEEEEECCC-CEEEEEECCCCeEEEEEeCC--CCc
Confidence 35788899999999998766544433332 23457789998755 443222 22222222211 1111 125
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSA 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~ 418 (540)
.+++|+|+|+.++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+| ++++| ++++.
T Consensus 119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---------------~~~-~~~~~~~~~~----dg~~l~~~~~~ 178 (391)
T 1l0q_A 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------------SVG-RSPKGIAVTP----DGTKVYVANFD 178 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------ECC-SSEEEEEECT----TSSEEEEEETT
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE---------------ecC-CCcceEEECC----CCCEEEEEeCC
Confidence 788899999987789999999999999999988777 444 4568999999 88877 67788
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS---QLGPVLVHTT-FGDLLRSLDPPSGF 494 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs---~Dg~v~iw~~-~g~~~~~l~~~~~~ 494 (540)
|++|++||+++ ++.+..+. +...+.+++|+|+++.+++++ .++.|++|+. +++.+..+..+.
T Consensus 179 ~~~v~~~d~~~-----------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 244 (391)
T 1l0q_A 179 SMSISVIDTVT-----------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-- 244 (391)
T ss_dssp TTEEEEEETTT-----------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--
T ss_pred CCEEEEEECCC-----------CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--
Confidence 99999999876 23444443 566789999999999988887 6899999986 788888887765
Q ss_pred CCceEEEEeeCCCEEE-E-ecCCeEEEEecC-CcEEEeee
Q psy1242 495 ASPESVVMSREGVIVV-N-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~-s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
.+.+++|+|+|++|+ + +.++.|++||+. |+.+..+.
T Consensus 245 -~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 245 -DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred -CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 468999999999774 4 458999999987 77766654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.80 E-value=8.7e-19 Score=176.08 Aligned_cols=180 Identities=12% Similarity=-0.005 Sum_probs=122.6
Q ss_pred ccceeEEEecCCCCCe-----eeecccceeeecC---CcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCcc
Q psy1242 234 LDDVCMSLKFPSNSPI-----CHVTANTYVTLHM---PSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLP 304 (540)
Q Consensus 234 ~~~~~~~~~f~~~~~~-----~~~~~~~~~~~~~---~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~ 304 (540)
++..+..+.+++++.. .|....+...+.+ +...+||+|.|++||+||+.+++....+ +|...+.
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~------- 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA------- 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C-------
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee-------
Confidence 5777778888887764 2334444444444 6788999999999999999876543322 1211110
Q ss_pred ccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEEEecCCCE-----------EEEEEecCCcEEEEEccCCeEEE
Q psy1242 305 LTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRF-----------LLACGFWDNSFRVFSTDNARIVQ 373 (540)
Q Consensus 305 ~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~spdg~~-----------llasgs~Dgsv~iwd~~~g~~~~ 373 (540)
.+.+++|+|+|+. .+++|+.|++|++||..+++.+.
T Consensus 228 ---------------------------------~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 228 ---------------------------------SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp ---------------------------------CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred ---------------------------------eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 1334444555543 35889999999999999999876
Q ss_pred EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC
Q psy1242 374 IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP 453 (540)
Q Consensus 374 ~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~ 453 (540)
.+... .-.+|.+.+.+.++ ++..+++|+.|++|+|||+.+ ++++.++.+|...
T Consensus 275 v~~~~----------~p~Gh~~~~lsg~~------sg~~lASgS~DgTIkIWDl~t-----------Gk~l~tL~gH~~~ 327 (356)
T 2w18_A 275 VMLYC----------LPPGQAGRFLEGDV------KDHCAAAILTSGTIAIWDLLL-----------GQCTALLPPVSDQ 327 (356)
T ss_dssp EEEEC----------CCTTCCCCEEEEEE------ETTEEEEEETTSCEEEEETTT-----------CSEEEEECCC--C
T ss_pred EEEee----------ccCCCcceeEcccc------CCCEEEEEcCCCcEEEEECCC-----------CcEEEEecCCCCC
Confidence 55100 00367666544433 567999999999999999987 5688999999876
Q ss_pred EE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242 454 VT-SVAISAELGLVVSGSQLGPVLVHTT 480 (540)
Q Consensus 454 V~-~v~~spdg~~lasgs~Dg~v~iw~~ 480 (540)
+. +++|+|||++|+||+.|++|+||+.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 55 6899999999999999999999963
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.6e-19 Score=178.06 Aligned_cols=221 Identities=12% Similarity=-0.006 Sum_probs=145.0
Q ss_pred EEEccCcceEEEEcCCCCC---------cc--cCCCCcCCCCCCCCCccccC--CCCeeeccCCCCCCccccccCCC---
Q psy1242 267 TVTANHQFAINRWNPDYAA---------SI--QSPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAPVPKRHLGDN--- 330 (540)
Q Consensus 267 lvs~s~D~tv~~W~~~~~~---------~~--~~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~~~~~~~~~~--- 330 (540)
++|+|.|++|++|+..... .. ....|.+ ....+.+++ ++.++++++.+... ..+.+...
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~s~dg~i-~~wd~~~~~~~ 162 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN----EIIYMYGHNEVNTEYFIWADNRGTI-GFQSYEDDSQY 162 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS----CEEEEECCC---CCEEEEEETTCCE-EEEESSSSCEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC----CEEEEEcCCCCCCCEEEEEeCCCcE-EEEECCCCcEE
Confidence 8899999999999876321 01 1112222 233577888 88777766544332 22222211
Q ss_pred --cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeec-cCcceEEEEeccCc
Q psy1242 331 --FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECN 406 (540)
Q Consensus 331 --~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~ 406 (540)
........+.+++|+|+|. +|++|+.||+|++||+++++.+ ..+ .+ |.+.|++++|+|
T Consensus 163 ~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~---------------~~~h~~~v~~l~fs~-- 224 (343)
T 3lrv_A 163 IVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRF---------------PVDEEAKIKEVKFAD-- 224 (343)
T ss_dssp EEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEEC---------------CCCTTSCEEEEEECT--
T ss_pred EEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEE---------------eccCCCCEEEEEEeC--
Confidence 1111122367889999999 5799999999999999998876 666 66 999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCE--EEEEEcCCCCEEEEEeC-CCcEEEEeC-CC
Q psy1242 407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV--TSVAISAELGLVVSGSQ-LGPVLVHTT-FG 482 (540)
Q Consensus 407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V--~~v~~spdg~~lasgs~-Dg~v~iw~~-~g 482 (540)
+|.+|++++ |++|++||++..... ..+..+..|...+ .+++|+|++++|++++. |+.++||+. ++
T Consensus 225 --~g~~l~s~~-~~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 225 --NGYWMVVEC-DQTVVCFDLRKDVGT--------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp --TSSEEEEEE-SSBEEEEETTSSTTC--------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred --CCCEEEEEe-CCeEEEEEcCCCCcc--------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 999999999 559999999874311 1122222344444 46999999999999998 999999965 22
Q ss_pred cEEEEecCCCCCCCceEEEEee---CCCEEEE-ecCCeEEEEecCCcEE
Q psy1242 483 DLLRSLDPPSGFASPESVVMSR---EGVIVVN-YERGHIAAFTMNGNRL 527 (540)
Q Consensus 483 ~~~~~l~~~~~~~~v~~l~fsp---dg~~l~s-~~dg~I~lw~~~g~~l 527 (540)
...... . ++..++|++ ++..+++ +.|+.+.++-..+...
T Consensus 294 ~~~~~~----~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 336 (343)
T 3lrv_A 294 TKNWTK----D--EESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSF 336 (343)
T ss_dssp TCSEEE----E--EEEECCC----CCCCEEEEEEETTEEEEEEECSSEE
T ss_pred ccceEe----c--CceeEecCccccccceeEEEecCCceEEEEecCCeE
Confidence 211111 2 456777877 7776665 5678888776555443
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=7.8e-19 Score=182.33 Aligned_cols=183 Identities=7% Similarity=-0.019 Sum_probs=121.9
Q ss_pred EEEEEEEec--------CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242 338 RHNCFVTTV--------DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA 409 (540)
Q Consensus 338 ~~~~~~~sp--------dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d 409 (540)
.+.+++|+| |++ +||+|+.|++|+|||+.++..+..+ .+|.+.|.+++|+| +
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~---------------~~~~~~v~~v~~~p----~ 197 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGPILAG---------------YPLSSPGISVQFRP----S 197 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEEEEEE---------------EECSSCEEEEEEET----T
T ss_pred ceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCceeeee---------------cCCCCCcEEEEECC----C
Confidence 377888887 777 6899999999999999988877776 68899999999999 6
Q ss_pred C-cEEEEEeCCCcEEEEEcCCCcccccCCC--------------CCCcceEEeccCCCCEEEEEEc-CCCCEEEEEeCCC
Q psy1242 410 D-CFIASGSADCTVLLWHWNARTQSIVGET--------------DTPTPRATLTGHEQPVTSVAIS-AELGLVVSGSQLG 473 (540)
Q Consensus 410 g-~~l~sgs~DgtV~lWd~~~~~~~~~~~~--------------~~~~~~~~l~~h~~~V~~v~~s-pdg~~lasgs~Dg 473 (540)
+ .+|++|+.|++|++||+++......... ..........+|...|.++.|+ +++..+++++.|+
T Consensus 198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~ 277 (393)
T 4gq1_A 198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG 277 (393)
T ss_dssp EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS
T ss_pred CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC
Confidence 6 5899999999999999876442210000 0001112345788899999987 7999999999999
Q ss_pred cEEEEeC-CCcEEEEecCCCCCC----------------CceEEEEee--CCCEEEEe-cCCeEEEEecC-CcEEEe-ee
Q psy1242 474 PVLVHTT-FGDLLRSLDPPSGFA----------------SPESVVMSR--EGVIVVNY-ERGHIAAFTMN-GNRLRH-ES 531 (540)
Q Consensus 474 ~v~iw~~-~g~~~~~l~~~~~~~----------------~v~~l~fsp--dg~~l~s~-~dg~I~lw~~~-g~~l~~-~~ 531 (540)
++++|+. .++....+..+.... ......|+| ++.++++| .||.|++||+. |+.+.. ..
T Consensus 278 ~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 278 AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred CEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9999976 555444444433200 112233433 34456665 48999999987 655544 35
Q ss_pred cCCcceecC
Q psy1242 532 HNDNLQKTA 540 (540)
Q Consensus 532 ~~~~V~~va 540 (540)
|..+|.+|+
T Consensus 358 ~~~~V~sva 366 (393)
T 4gq1_A 358 LGMPIVDFC 366 (393)
T ss_dssp CSSCEEEEE
T ss_pred CCCcEEEEE
Confidence 888888774
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.78 E-value=3.1e-17 Score=171.06 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=162.0
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC-----
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD----- 329 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~----- 329 (540)
...+++++.++++++.|++|++|+..+....... .|. .....+.+++|+..+ +++..+. ....+.+..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPIRDLVYCSNWISE-DISVIDRKTKLEIR 248 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCCCCEEEEEecCCC-cEEEEECCCCcEEE
Confidence 3455666778999999999999998775543322 232 222357788888655 3432222 222222211
Q ss_pred CcCcceeeEEEEEEEecCCCEEEEEEe--------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242 330 NFSQKLRVRHNCFVTTVDSRFLLACGF--------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401 (540)
Q Consensus 330 ~~~~~~~v~~~~~~~spdg~~llasgs--------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~ 401 (540)
.+.. ...+.+++++|+|+.+ ++++ .|+.|++||+.+++.+..+ .|...+.+++
T Consensus 249 ~~~~--~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----------------~~~~~~~~~~ 309 (433)
T 3bws_A 249 KTDK--IGLPRGLLLSKDGKEL-YIAQFSASNQESGGGRLGIYSMDKEKLIDTI----------------GPPGNKRHIV 309 (433)
T ss_dssp ECCC--CSEEEEEEECTTSSEE-EEEEEESCTTCSCCEEEEEEETTTTEEEEEE----------------EEEECEEEEE
T ss_pred EecC--CCCceEEEEcCCCCEE-EEEECCCCccccCCCeEEEEECCCCcEEeec----------------cCCCCcceEE
Confidence 1111 1236788899999975 5555 4889999999998877655 4566889999
Q ss_pred eccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---------
Q psy1242 402 RSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--------- 471 (540)
Q Consensus 402 ~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--------- 471 (540)
|+| +++ .+++++.|+.|++||+.+ ++.+..+. +...+.+++|+|+++++++++.
T Consensus 310 ~~~----~g~~l~~~~~~~~~v~v~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 310 SGN----TENKIYVSDMCCSKIEVYDLKE-----------KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp ECS----STTEEEEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred ECC----CCCEEEEEecCCCEEEEEECCC-----------CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence 999 886 456778999999999875 33455554 6778999999999998888876
Q ss_pred ------CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-c-CCeEEEEecCC
Q psy1242 472 ------LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-E-RGHIAAFTMNG 524 (540)
Q Consensus 472 ------Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~-dg~I~lw~~~g 524 (540)
||.|++|+. +++.+..+..+. .+.+++|+|+|++|+++ . ++.|++|++++
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 579999976 788888887643 57999999999998864 3 89999999875
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.78 E-value=2.2e-17 Score=172.25 Aligned_cols=241 Identities=7% Similarity=0.011 Sum_probs=171.5
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccC------CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-c
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS------PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-F 331 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~------~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~ 331 (540)
.+.++..++++++.|++|++||..+++.... .+|.+. ...+.+++++.++++++.+... ..+.+... .
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~s~~~d~~v-~~~d~~~~~~ 203 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF----VETISIPEHNELWVSQMQANAV-HVFDLKTLAY 203 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE----EEEEEEGGGTEEEEEEGGGTEE-EEEETTTCCE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc----eeEEEEcCCCEEEEEECCCCEE-EEEECCCceE
Confidence 3444677788999999999999987654321 123322 2246678888877776432222 22222110 0
Q ss_pred Cc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242 332 SQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT 408 (540)
Q Consensus 332 ~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~ 408 (540)
.. .....+.+++|+|+++.++++++.|+.|++||+.+++.+..+ .. ...+.+++|+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------~~-~~~~~~~~~~~---- 263 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---------------DK-IGLPRGLLLSK---- 263 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---------------CC-CSEEEEEEECT----
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---------------cC-CCCceEEEEcC----
Confidence 00 011236788999999987778878999999999999887776 33 34589999999
Q ss_pred CCcEEEEEe--------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q psy1242 409 ADCFIASGS--------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHT 479 (540)
Q Consensus 409 dg~~l~sgs--------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~ 479 (540)
+|+.|++++ .|+.|++||+.+. +.+..+ .|...+.+++|+|+++ ++++++.|+.|++|+
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-----------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKE-----------KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTT-----------EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCC-----------cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 999999888 5889999998752 333333 5666899999999997 557778999999998
Q ss_pred C-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----------------CCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 480 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----------------RGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 480 ~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----------------dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
. +++.+..+.. .. .+.+++|+|+|++|+++. ||.|++||+. ++.+..+.....+.++
T Consensus 332 ~~~~~~~~~~~~-~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 406 (433)
T 3bws_A 332 LKEKKVQKSIPV-FD--KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGL 406 (433)
T ss_dssp TTTTEEEEEEEC-SS--SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CCCCcEEEEecC-CC--CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceE
Confidence 7 6777777763 33 579999999999887743 3699999986 7777776655555554
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=4.7e-17 Score=170.36 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=158.6
Q ss_pred ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCC--CCccccccCCCcCc---ceeeEEEEEEEecCC
Q psy1242 274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--APVPKRHLGDNFSQ---KLRVRHNCFVTTVDS 348 (540)
Q Consensus 274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~--~~~~~~~~~~~~~~---~~~v~~~~~~~spdg 348 (540)
++|++||..+........|.+. ...+.|++|+..++.++... .....+.+...... .....+.+++|+|||
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~----v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQP----LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSC----EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEEEeCCCCc----ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC
Confidence 7999999875444333445433 23577999998776654332 12222222211000 011236788999999
Q ss_pred CEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-CC--cEE
Q psy1242 349 RFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-DC--TVL 423 (540)
Q Consensus 349 ~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-Dg--tV~ 423 (540)
+.|+++++.|+. |++||+.+++. ..+ ..|...+.+++|+| ||++|++++. ++ .|.
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l---------------~~~~~~~~~~~~sp----dg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQI-RQV---------------TDGRSNNTEPTWFP----DSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCE-EEC---------------CCCSSCEEEEEECT----TSSEEEEEECTTSSCEEE
T ss_pred CEEEEEEecCCCceEEEEECCCCCE-EeC---------------cCCCCcccceEECC----CCCEEEEEECCCCCcEEE
Confidence 986667777665 99999998775 344 67888999999999 9999988886 55 566
Q ss_pred EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcEEEEecCCCCCCCceEE
Q psy1242 424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---GPVLVHTTFGDLLRSLDPPSGFASPESV 500 (540)
Q Consensus 424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~v~iw~~~g~~~~~l~~~~~~~~v~~l 500 (540)
+||+.+. ....+..|...+.+++|+|+|++|++++.+ +.|.+|+..+.....+..+. .+.++
T Consensus 295 ~~d~~~~------------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~ 359 (415)
T 2hqs_A 295 KVNINGG------------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETP 359 (415)
T ss_dssp EEETTSS------------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEE
T ss_pred EEECCCC------------CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCe
Confidence 6676542 234556677889999999999999888764 47888887443345565543 57999
Q ss_pred EEeeCCCEEEEe-cCC---eEEEEecCCcEEEeee-cCCcceecC
Q psy1242 501 VMSREGVIVVNY-ERG---HIAAFTMNGNRLRHES-HNDNLQKTA 540 (540)
Q Consensus 501 ~fspdg~~l~s~-~dg---~I~lw~~~g~~l~~~~-~~~~V~~va 540 (540)
+|+|+|+.|+++ .++ .|.+|+++|+.+..+. +.+.|.++|
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA 404 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCc
Confidence 999999988874 333 7999999988887775 778887764
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=1e-17 Score=176.54 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=126.7
Q ss_pred EEEEEEecCCCEEEE---EEecCCcEEEEEccCC--------eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 339 HNCFVTTVDSRFLLA---CGFWDNSFRVFSTDNA--------RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 339 ~~~~~~spdg~~lla---sgs~Dgsv~iwd~~~g--------~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
+.+++|+|+|++|++ +|+.|++|+|||+.++ +.+..+ ..+.+|.+.|++++|+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~------------~~~~~h~~~V~~v~~~p--- 159 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH------------KLLKDAGGMVIDMKWNP--- 159 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE------------ECCCSGGGSEEEEEECS---
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee------------eccCCCCCceEEEEECC---
Confidence 789999999997543 7889999999999765 221111 22368999999999999
Q ss_pred CC-CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEE
Q psy1242 408 TA-DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLR 486 (540)
Q Consensus 408 ~d-g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~ 486 (540)
+ +.+|++|+.||+|++||++.. ..+....+|...|.+++|+|+|++|++|+.||+|++|+..++...
T Consensus 160 -~~~~~las~s~Dg~v~iwD~~~~-----------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 160 -TVPSMVAVCLADGSIAVLQVTET-----------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp -SCTTEEEEEETTSCEEEEEESSS-----------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred -CCCCEEEEEECCCeEEEEEcCCC-----------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 6 889999999999999999863 344556679999999999999999999999999999988877777
Q ss_pred EecCCCC-----CCCceEEEEeeCCCEEEEe--cCC------eEEEEecC
Q psy1242 487 SLDPPSG-----FASPESVVMSREGVIVVNY--ERG------HIAAFTMN 523 (540)
Q Consensus 487 ~l~~~~~-----~~~v~~l~fspdg~~l~s~--~dg------~I~lw~~~ 523 (540)
.+..+.. ...|.+++|++++.++++. .+| .+++|++.
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 7765532 1257899999999988763 232 38999986
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=1.9e-15 Score=158.01 Aligned_cols=158 Identities=12% Similarity=0.026 Sum_probs=121.2
Q ss_pred EEEEEEEecCCCEEEEEEecCC---cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDN---SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dg---sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
.+.+++|+|||++ |++++.|+ .|++||+.+++.. .+ ..|.+.+.+++|+| ||+.|+
T Consensus 180 ~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l---------------~~~~~~~~~~~~sp----dg~~la 238 (415)
T 2hqs_A 180 PLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QV---------------ASFPRHNGAPAFSP----DGSKLA 238 (415)
T ss_dssp CEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EE---------------ECCSSCEEEEEECT----TSSEEE
T ss_pred cceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-Ee---------------ecCCCcccCEEEcC----CCCEEE
Confidence 3788999999996 67777775 9999999988875 34 57888999999999 999887
Q ss_pred -EEeCCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCcEEEEe
Q psy1242 415 -SGSADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LG--PVLVHTTFGDLLRSL 488 (540)
Q Consensus 415 -sgs~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg--~v~iw~~~g~~~~~l 488 (540)
+++.|+. |.+||+.+. ....+.+|...+.+++|+|||+.|++++. ++ .|.+|+..+.....+
T Consensus 239 ~~~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI 306 (415)
T ss_dssp EEECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred EEEecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence 6776665 888887652 23677888899999999999999888886 55 455566644344555
Q ss_pred cCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEee
Q psy1242 489 DPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~~ 530 (540)
..+.. .+.+++|+|+|++|+++. +..|.+|++++..+..+
T Consensus 307 ~~~~~--~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 307 TWEGS--QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp CCSSS--EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred ecCCC--cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 55555 578999999999998743 25899999985444444
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=1.2e-16 Score=168.23 Aligned_cols=183 Identities=10% Similarity=0.010 Sum_probs=126.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-eeeEEEeeccCcceEEEEeccCccCCCcEEE---
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-SRIVQIIFGHYGVVTCLSRSECNITADCFIA--- 414 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~--- 414 (540)
+.++++++++.. +++|+.|+ ++||+............+...+. ...... ..|.+.|++++|+| +|++|+
T Consensus 39 ~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~sp----dg~~lav~~ 111 (434)
T 2oit_A 39 SSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSC----DNLTLSACM 111 (434)
T ss_dssp CBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECT----TSCEEEEEE
T ss_pred ccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcC----CCCEEEEEE
Confidence 456778999985 67888787 99987642111000000000000 000011 24677899999999 999999
Q ss_pred -EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242 415 -SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 415 -sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
+|+.|++|+|||+................+..+.+|...|.+++|+|+ +.+|++++.||+|++|+. ++..+....+|
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999999865310000000001124566789999999999998 789999999999999976 56666566666
Q ss_pred CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEee
Q psy1242 492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~ 530 (540)
.. .|.+++|+|+|++|++| .||.|++||++++....+
T Consensus 192 ~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 192 TV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp GG--CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEE
T ss_pred CC--ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccc
Confidence 66 78999999999999985 689999999997766554
No 132
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=1.4e-15 Score=165.80 Aligned_cols=232 Identities=11% Similarity=0.042 Sum_probs=154.3
Q ss_pred ceeEEEecCCCCCeeeecccceeeecCCcEEEEEccC-cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeec
Q psy1242 236 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH-QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHP 314 (540)
Q Consensus 236 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~-D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~ 314 (540)
..+..+.|++++.. +|+++. |+++++|++.++.......+.. .....+.||+| .++.+
T Consensus 22 ~~~~~~~~~~DG~~-----------------la~~s~~~g~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDK-----------------LLVVGFSEGSVNAYLYDGGETVKLNREPI---NSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTE-----------------EEEEEEETTEEEEEEEETTEEEECCSSCC---SEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCe-----------------EEEEEccCCceeEEEEcCCCcEeeecccc---cccccccCCCC-eEEEE
Confidence 34667777777665 777666 9999999986554444333331 11234668888 55554
Q ss_pred cCC--CCCCcccc--cc--CC---CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeee
Q psy1242 315 TSN--NNAPVPKR--HL--GD---NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSR 385 (540)
Q Consensus 315 g~~--~~~~~~~~--~~--~~---~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~ 385 (540)
++. .......+ .. .+ ....... ....+|+|||+.++++.+.++.+.+||+.+++.....
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---------- 148 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQRLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA---------- 148 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCEECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE----------
T ss_pred eccCCCCcceEEEEEeccCCCccccccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee----------
Confidence 432 11111110 11 00 0000111 2245778898754444444555669999988765544
Q ss_pred eEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC
Q psy1242 386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA 461 (540)
Q Consensus 386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp 461 (540)
. +.. .+++|+| ||++|++++.| ..|.+||+.++ + ...+.+|...+..++|||
T Consensus 149 -----~-~~~--~~~~~sp----DG~~la~~~~~~~~~~~i~~~d~~~g-----------~-~~~l~~~~~~~~~~~~Sp 204 (582)
T 3o4h_A 149 -----R-LPG--FGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG-----------G-LRVFDSGEGSFSSASISP 204 (582)
T ss_dssp -----E-ESS--CEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTC-----------C-CEEECCSSCEEEEEEECT
T ss_pred -----c-CCC--ceEEECC----CCCEEEEEEEcCCCCeEEEEEcCCCC-----------C-ceEeecCCCccccceECC
Confidence 2 223 7899999 99999988877 78999997752 2 346788989999999999
Q ss_pred CCCEEEEEeCCC--cEEEEeC-CCcEEEEecCCCCCCCceEEE--------EeeCCCEEEEe-cCCeEEEEecCCcEEE
Q psy1242 462 ELGLVVSGSQLG--PVLVHTT-FGDLLRSLDPPSGFASPESVV--------MSREGVIVVNY-ERGHIAAFTMNGNRLR 528 (540)
Q Consensus 462 dg~~lasgs~Dg--~v~iw~~-~g~~~~~l~~~~~~~~v~~l~--------fspdg~~l~s~-~dg~I~lw~~~g~~l~ 528 (540)
||+.|++++.+| .|++|+. +++.. .+..+.. .+..++ |+|||.+++++ .++.+++|++ |+.+.
T Consensus 205 DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~ 279 (582)
T 3o4h_A 205 GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVE 279 (582)
T ss_dssp TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEEC
T ss_pred CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeec
Confidence 999999888899 7788877 55555 6666655 456666 99999877774 6899999999 77654
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.65 E-value=3.7e-14 Score=143.02 Aligned_cols=228 Identities=12% Similarity=0.067 Sum_probs=155.8
Q ss_pred cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-----cCc--------ceeeE
Q psy1242 273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-----FSQ--------KLRVR 338 (540)
Q Consensus 273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-----~~~--------~~~v~ 338 (540)
+++|.+||..+.+........ .....+.+++|+. +.+++.... .......... +.. .....
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNS-AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ 142 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEEESCCCCCCSSCCCCE
T ss_pred CccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCC-EEEEEeCCCCeeEEEEecCCCccccccCCCC
Confidence 789999999876644333222 1234577889886 444332211 1111111100 000 00112
Q ss_pred EEEEEEecCCCEEEEEE-ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 339 HNCFVTTVDSRFLLACG-FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasg-s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
..+++++|+|+++++++ +.++.|.+||..+++.+..+ ..+...+.+++|+| +|++|++++
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~---------------~~~~~~~~~~~~s~----dg~~l~~~~ 203 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI---------------QNTGKMSTGLALDS----EGKRLYTTN 203 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE---------------CCCCTTCCCCEEET----TTTEEEEEC
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe---------------cCCCCccceEEECC----CCCEEEEEc
Confidence 56788999999866665 35889999999999988877 44555688999999 999999999
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEec----cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC-CCcEEEEecCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLT----GHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTT-FGDLLRSLDPP 491 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~-~g~~~~~l~~~ 491 (540)
.++.|.+||..+. +.+..+. ++...+.+++|+|+++.++.++. ++.|.+|+. +++.+..+..+
T Consensus 204 ~~~~i~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 204 ADGELITIDTADN-----------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp TTSEEEEEETTTT-----------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCC-----------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999998763 3444443 35667889999999997766654 588999976 78888877754
Q ss_pred CCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 492 SGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 492 ~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
.. ..++|+|+|+.++. . .++.|.+||+. ++.+..+.....+.++
T Consensus 273 ~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 319 (353)
T 3vgz_A 273 ES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSL 319 (353)
T ss_dssp SC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeE
Confidence 42 57999999996655 3 47999999997 7777666544444443
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=3.7e-15 Score=145.42 Aligned_cols=233 Identities=12% Similarity=-0.020 Sum_probs=154.2
Q ss_pred EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCcceeeEEE
Q psy1242 267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLRVRHN 340 (540)
Q Consensus 267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~v~~~ 340 (540)
..+.+.|++|++||..++.......|.+.+ ..+.+++|+..++++++. ....+.+.. .........+.
T Consensus 15 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v----~~~~~spdg~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 15 GPGGSMRSSIEIFNIRTRKMRVVWQTPELF----EAPNWSPDGKYLLLNSEG--LLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp ---CCCCEEEEEEETTTTEEEEEEEESSCC----EEEEECTTSSEEEEEETT--EEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred cCCCCcceeEEEEeCCCCceeeeccCCcce----EeeEECCCCCEEEEEcCC--eEEEEeCCCCCCceEecccccccccc
Confidence 335678999999999876655555554333 357899999877765421 222222211 01111112356
Q ss_pred EEEEecCCCEEEEEEe--cCCcEEEEEc--cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242 341 CFVTTVDSRFLLACGF--WDNSFRVFST--DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S 415 (540)
Q Consensus 341 ~~~~spdg~~llasgs--~Dgsv~iwd~--~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s 415 (540)
+++|+|+|++ |++++ .++..+||.+ .+++ ...+ ..+ ..+.+++|+| +|++|+ +
T Consensus 89 ~~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~-~~~~---------------~~~-~~~~~~~~sp----dg~~l~~~ 146 (297)
T 2ojh_A 89 DHGISPDGAL-YAISDKVEFGKSAIYLLPSTGGT-PRLM---------------TKN-LPSYWHGWSP----DGKSFTYC 146 (297)
T ss_dssp CCEECTTSSE-EEEEECTTTSSCEEEEEETTCCC-CEEC---------------CSS-SSEEEEEECT----TSSEEEEE
T ss_pred ceEECCCCCE-EEEEEeCCCCcceEEEEECCCCc-eEEe---------------ecC-CCccceEECC----CCCEEEEE
Confidence 7889999996 56666 3345555554 4444 3333 233 3488999999 898877 7
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCcEEEEecCCC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT--FGDLLRSLDPPS 492 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~--~g~~~~~l~~~~ 492 (540)
++.|+.++||+++... .....+..|...+.+++|+|+++.++.++ .++.+.+|.. .+..+..+..+.
T Consensus 147 ~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDS----------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp EEETTEEEEEEEETTT----------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred ECCCCceEEEEEECCC----------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 8889999999976422 23456777888999999999999887766 5899999843 566677777766
Q ss_pred CCCCceEEEEeeCCCEEEEec-C-----------CeEEEEecCC-cE--EEee-ecCCcceec
Q psy1242 493 GFASPESVVMSREGVIVVNYE-R-----------GHIAAFTMNG-NR--LRHE-SHNDNLQKT 539 (540)
Q Consensus 493 ~~~~v~~l~fspdg~~l~s~~-d-----------g~I~lw~~~g-~~--l~~~-~~~~~V~~v 539 (540)
. .+..++|+|+|++|++++ + +.|.+|++++ +. +... .|...|.++
T Consensus 217 ~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 277 (297)
T 2ojh_A 217 Y--GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP 277 (297)
T ss_dssp E--EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred c--ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence 5 678999999999888742 2 5699999984 33 3322 355666554
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=2.1e-14 Score=139.98 Aligned_cols=218 Identities=14% Similarity=0.034 Sum_probs=146.2
Q ss_pred eeecCCcEEEEEccCcceEEEEcCCC-CCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCC-CCcccccc--CC---
Q psy1242 258 VTLHMPSVVTVTANHQFAINRWNPDY-AASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNN-APVPKRHL--GD--- 329 (540)
Q Consensus 258 ~~~~~~~~~lvs~s~D~tv~~W~~~~-~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~-~~~~~~~~--~~--- 329 (540)
+.+.+++..+++++ ++.|++|+..+ +...... .+. ......+.|++|+..++.+.... .....+.+ ..
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA---TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 33444444466665 78999999977 5533322 221 12234578999998777654211 11111111 11
Q ss_pred -CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242 330 -NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI 407 (540)
Q Consensus 330 -~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~ 407 (540)
.+.... .+.+++|+|+|+.++++++.|+.++||+++. +.....+ ..|...+.+++|+|
T Consensus 123 ~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~s~--- 182 (297)
T 2ojh_A 123 RLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL---------------THGEGRNDGPDYSP--- 182 (297)
T ss_dssp EECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC---------------CCSSSCEEEEEECT---
T ss_pred EEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc---------------ccCCCccccceECC---
Confidence 011111 1567789999998776888999999998642 2233344 56788899999999
Q ss_pred CCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-----------CcE
Q psy1242 408 TADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-----------GPV 475 (540)
Q Consensus 408 ~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-----------g~v 475 (540)
+|+.|+.++ .++.++||+++.. ......+..|...+.+++|+|++++|++++.+ +.|
T Consensus 183 -dg~~l~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 183 -DGRWIYFNSSRTGQMQIWRVRVD----------GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp -TSSEEEEEECTTSSCEEEEEETT----------SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred -CCCEEEEEecCCCCccEEEECCC----------CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 999887766 5999999998642 23456777888889999999999999888866 457
Q ss_pred EEEeC-CCcE--EEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242 476 LVHTT-FGDL--LRSLDPPSGFASPESVVMSREGVIVVNY 512 (540)
Q Consensus 476 ~iw~~-~g~~--~~~l~~~~~~~~v~~l~fspdg~~l~s~ 512 (540)
.+|+. +++. +..+..+.. .+..++|+|+|+.|+++
T Consensus 252 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDLFGGQG--TMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp EEEETTSCSCEEEEEEEESTT--TSCSCCBCTTSSEEEEE
T ss_pred EEEecCCCCceeeeccCCCCc--ccccceECCCCCEEEEE
Confidence 88876 4443 344445565 67899999999988874
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.62 E-value=4.8e-14 Score=141.22 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=143.1
Q ss_pred cEEEEEccCcceEEEEcCCC-CC--cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC---CCcCcce--
Q psy1242 264 SVVTVTANHQFAINRWNPDY-AA--SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG---DNFSQKL-- 335 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~-~~--~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~---~~~~~~~-- 335 (540)
..++++++.|+.|++|+... +. ......+. .....+.+++|+..+++++........+.+. +......
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 45577778899999999853 21 11222232 2234578999997555443322222222222 0100000
Q ss_pred --eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242 336 --RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410 (540)
Q Consensus 336 --~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg 410 (540)
.....+++|+|+|+++++++..++.|.+||+.++ +.+..+ .. ...+.+++|+| +|
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~-~~~~~~~~~s~----dg 140 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---------------EG-LDGCHSANISP----DN 140 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------------CC-CTTBCCCEECT----TS
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc---------------cC-CCCceEEEECC----CC
Confidence 0135678899999987666667899999999533 333333 33 34588999999 99
Q ss_pred cEEEEEe-CCCcEEEEEcCC-CcccccCCCCCCcceE--Eecc-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeC---C
Q psy1242 411 CFIASGS-ADCTVLLWHWNA-RTQSIVGETDTPTPRA--TLTG-HEQPVTSVAISAELGLVVSG-SQLGPVLVHTT---F 481 (540)
Q Consensus 411 ~~l~sgs-~DgtV~lWd~~~-~~~~~~~~~~~~~~~~--~l~~-h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~---~ 481 (540)
++|++++ .++.|.+||+.. ... .... .+.. ....+.+++|+|++++++.+ ..++.+.+|+. +
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHL---------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCE---------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred CEEEEecCCCCEEEEEEecCCCce---------eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 8888877 899999999875 211 1111 2222 34578899999999976554 48899999975 3
Q ss_pred CcE--EEEecC---C-CCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC
Q psy1242 482 GDL--LRSLDP---P-SGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN 523 (540)
Q Consensus 482 g~~--~~~l~~---~-~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~ 523 (540)
++. ...+.. . .....+..++|+|+|++|+. . .++.|.+|+++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 432 233321 1 11124568999999998774 3 57999999987
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.61 E-value=6e-14 Score=140.13 Aligned_cols=237 Identities=10% Similarity=-0.027 Sum_probs=152.6
Q ss_pred EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-cCcce--------
Q psy1242 266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQKL-------- 335 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-~~~~~-------- 335 (540)
.+++++.+++|++||..+++.......... ......+.+++|+. +.+++... .......+... ....+
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKS-ESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTT-TEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCC-CeEEEEECCCCCeEeeEEcCCcccc
Confidence 478889999999999987654433322210 00234678999985 44443222 11111111110 00000
Q ss_pred eeEEEEEEEecCCCEEEEEEe-----------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 336 RVRHNCFVTTVDSRFLLACGF-----------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 336 ~v~~~~~~~spdg~~llasgs-----------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
.....+++++|+|++++++.. .++.|.+||+.+++.+..+ .. ...+.+++|+|
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---------------~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------------EA-PRQITMLAWAR 144 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------------EC-CSSCCCEEECT
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE---------------eC-CCCcceeEECC
Confidence 112456788999997544431 4799999999998887776 32 34578899999
Q ss_pred CccCCCcEEEEEeCCCcEEEEEcCCCccccc-CCCC--C-------Cc--------------------------------
Q psy1242 405 CNITADCFIASGSADCTVLLWHWNARTQSIV-GETD--T-------PT-------------------------------- 442 (540)
Q Consensus 405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~--~-------~~-------------------------------- 442 (540)
+|++|+++ ++.|.+||+.+...... .... . +.
T Consensus 145 ----dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 145 ----DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp ----TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred ----CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccc
Confidence 99988887 68999999875432100 0000 0 00
Q ss_pred -ceE------------EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCE
Q psy1242 443 -PRA------------TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI 508 (540)
Q Consensus 443 -~~~------------~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~ 508 (540)
.+. .+..+...+.+++|+|++++++++ ++.|.+|+. +++.+..+..+. .+.+++|+|+|++
T Consensus 219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~ 293 (337)
T 1pby_B 219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCE
T ss_pred cceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEECCCCCE
Confidence 001 122334456789999999998888 789999976 677777776543 4689999999997
Q ss_pred EEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 509 VVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 509 l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
|++ +.++.|.+|++. ++.+..+.
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEE
Confidence 776 457999999987 77777765
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.59 E-value=1.1e-13 Score=139.14 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=149.5
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCe-eeccCCCCCCccccccCCC-cCcce-
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL-THPTSNNNAPVPKRHLGDN-FSQKL- 335 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l-~~~g~~~~~~~~~~~~~~~-~~~~~- 335 (540)
.+.....++++++.+++|++||..+++......... ......+.+++|+.. .+++... .......+... .....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~-~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHY-GDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCC-CcEEEEeCCCCcEEEEEE
Confidence 345566779999999999999998765433222211 012345778899864 3333211 11111111110 00000
Q ss_pred --------eeEEEEEEEecCCCEEEEEEec------------CCcEEEEEccCCeEE---EEEecccceeeeeeEEEeec
Q psy1242 336 --------RVRHNCFVTTVDSRFLLACGFW------------DNSFRVFSTDNARIV---QIIFGHYGVVTSRIVQIIFG 392 (540)
Q Consensus 336 --------~v~~~~~~~spdg~~llasgs~------------Dgsv~iwd~~~g~~~---~~l~~~~~~v~~~~~~~l~~ 392 (540)
.....+++++|||+++ ++++. ++.|.+||+.+++.. ..+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~- 145 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---------------P- 145 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---------------E-
T ss_pred cccccccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceeeec---------------c-
Confidence 1114567889999975 55544 489999999885433 222 2
Q ss_pred cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc-CCCCCC-----------------------cc-----
Q psy1242 393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV-GETDTP-----------------------TP----- 443 (540)
Q Consensus 393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~~~-----------------------~~----- 443 (540)
+...+.+++|+| +|+ ++.++. .|.+||..+...... ...... .+
T Consensus 146 ~~~~~~~~~~s~----dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 146 MPRQVYLMRAAD----DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp CCSSCCCEEECT----TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred CCCcccceeECC----CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 334688999999 898 555544 499999865432110 000000 00
Q ss_pred ----------------------------eEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242 444 ----------------------------RATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG 493 (540)
Q Consensus 444 ----------------------------~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~ 493 (540)
...+..+...+.+++++| ++++++++ ++.|.+|+. +++.+..+..+.
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~- 295 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH- 295 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-
Confidence 000011223567888999 99998888 889999976 778777776543
Q ss_pred CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecC
Q psy1242 494 FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHN 533 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~ 533 (540)
.+.+++|+|+|+.|++ +.++.|.+||++ ++.+..+...
T Consensus 296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp --CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred --CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 4679999999987776 457999999997 7777777533
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.59 E-value=2.3e-13 Score=136.23 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=140.8
Q ss_pred eecCCcEEEEEccC-cceEEEEcCC--CCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC-------
Q psy1242 259 TLHMPSVVTVTANH-QFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG------- 328 (540)
Q Consensus 259 ~~~~~~~~lvs~s~-D~tv~~W~~~--~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~------- 328 (540)
.+.+++..+++++. ++.|++|+.. ++.......... ......+.+++|+..+.+++........+.+.
T Consensus 44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 33444433555554 4999999986 333221111110 11334578899997554332222222222221
Q ss_pred -CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEee-ccCcceEEEEeccC
Q psy1242 329 -DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIF-GHYGVVTCLSRSEC 405 (540)
Q Consensus 329 -~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~-~h~~~Vt~l~~sp~ 405 (540)
...... ..+.+++|+|+|+++++++..++.|++||+.+ ++....... .+. .....+.+++|+|
T Consensus 122 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~p- 187 (343)
T 1ri6_A 122 VDVVEGL--DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA-----------EVTTVEGAGPRHMVFHP- 187 (343)
T ss_dssp EEEECCC--TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-----------EEECSTTCCEEEEEECT-
T ss_pred cccccCC--CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc-----------ccccCCCCCcceEEECC-
Confidence 000000 11567788999998666555899999999987 654321100 002 2335788999999
Q ss_pred ccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEec----cC--CCCEEEEEEcCCCCEEE-EEeCCCcEEE
Q psy1242 406 NITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLT----GH--EQPVTSVAISAELGLVV-SGSQLGPVLV 477 (540)
Q Consensus 406 ~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h--~~~V~~v~~spdg~~la-sgs~Dg~v~i 477 (540)
+|++++.++ .++.|.+|+++...+. ......+. ++ ...+.+++|+|+++.++ ++..++.|.+
T Consensus 188 ---dg~~l~~~~~~~~~i~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 188 ---NEQYAYCVNELNSSVDVWELKDPHGN-------IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp ---TSSEEEEEETTTTEEEEEESSCTTSC-------CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---CCCEEEEEeCCCCEEEEEEecCCCCc-------EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 898775554 8999999998642211 11122222 11 34677899999998776 5557899999
Q ss_pred EeCC---C--cEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242 478 HTTF---G--DLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 478 w~~~---g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~ 523 (540)
|+.. + +.+..+..+. .+.+++|+|+|++|+++ .++.|.+|+++
T Consensus 258 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 258 FSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9653 2 3444554433 36899999999988775 46999999654
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=3.9e-14 Score=153.36 Aligned_cols=233 Identities=6% Similarity=-0.006 Sum_probs=161.0
Q ss_pred eeeecCCcEEEEEccCcceEEEEcC--CCCCcccCCCCcCCCCCCCCCccccC----CCCeeeccCCCCCCccccc----
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNP--DYAASIQSPSYAETPGSPPGNLPLTL----DPILTHPTSNNNAPVPKRH---- 326 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~--~~~~~~~~~~~~~~v~~~~~~~~~s~----D~~l~~~g~~~~~~~~~~~---- 326 (540)
.+.+.+++..+++++.|++|++||. .+.+......+ +.....+.+++ |+..+.+++..........
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 3457777878888999999999999 55443322222 22234578899 9977766542111111111
Q ss_pred -----cCCC---cCc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE--EEecccceeeeeeEEEeecc
Q psy1242 327 -----LGDN---FSQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGH 393 (540)
Q Consensus 327 -----~~~~---~~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h 393 (540)
+... .+. +..-++..++++|++..++++...+++|.+||..+++.+. .+ .+
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i----------------~~ 322 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI----------------GA 322 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE----------------EC
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe----------------cc
Confidence 1100 000 0011366788899999889999999999999998876543 32 35
Q ss_pred CcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEecc----CCCCEEEEEEcCC-CCEEE
Q psy1242 394 YGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTG----HEQPVTSVAISAE-LGLVV 467 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~v~~spd-g~~la 467 (540)
...+..++|+| +|+++++++ .+++|.+||..+ ++++..+.. |.+....+ ++|+ +..++
T Consensus 323 ~~~~~~~~~sp----dg~~l~va~~~~~~v~v~D~~t-----------g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 323 APFLHDGGWDS----SHRYFMTAANNSNKVAVIDSKD-----------RRLSALVDVGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp CSSCCCEEECT----TSCEEEEEEGGGTEEEEEETTT-----------TEEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred CcCccCceECC----CCCEEEEEecCCCeEEEEECCC-----------CeEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence 56688899999 999876554 689999999876 345666653 65443333 4777 66677
Q ss_pred EEe-CCCcEEEEeC-C-------CcEEEEecCCCCCCCceEEEEeeCCCEEEEec--------CCeEEEEecC-CcEE
Q psy1242 468 SGS-QLGPVLVHTT-F-------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGHIAAFTMN-GNRL 527 (540)
Q Consensus 468 sgs-~Dg~v~iw~~-~-------g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~--------dg~I~lw~~~-g~~l 527 (540)
+++ .|++|.+|+. + +++++++..+.+ .+..++++|+|+.|+++. +++|.+||++ ++.+
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 776 6899999965 4 789999998876 568899999999999965 6799999987 4433
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=2.4e-13 Score=147.19 Aligned_cols=251 Identities=12% Similarity=0.111 Sum_probs=161.7
Q ss_pred CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc--CCC-cCcce--e
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--GDN-FSQKL--R 336 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~--~~~-~~~~~--~ 336 (540)
++..++++++.|++|.+||..+++........ .....+.+++|+..+.+++.+ .....+.+ ... ....+ .
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g----~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG----YAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECS----TTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecC----cccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence 34567899999999999999876654333211 112356799999777766544 33333333 110 00011 1
Q ss_pred eEEEEEEEec----CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCC-
Q psy1242 337 VRHNCFVTTV----DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITAD- 410 (540)
Q Consensus 337 v~~~~~~~sp----dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg- 410 (540)
.....++|+| ||++++++...+++|.|||..+++++..+..+...+... .-|. ..+.++.++| ++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~-----~~~~~~~v~~i~~s~----~~~ 292 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ-----TYHPEPRVAAIIASH----EHP 292 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC-----CEESCCCEEEEEECS----SSS
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc-----ccccCCceEEEEECC----CCC
Confidence 1357888999 999866666679999999999999998884321100000 0133 3789999999 55
Q ss_pred cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeC-CCcEEEEe
Q psy1242 411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~-~g~~~~~l 488 (540)
.++++...+++|.+||...... ..+..+ .+...+.+++|+|+|++++++ ..+++|.+|+. +++++..+
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~---------l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDN---------LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSS---------CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEEecCCCc---------ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence 5667778899999999875321 112233 356678889999999976655 46889999976 88888888
Q ss_pred cCCCCCCCceEEE-EeeC-CCEEEEe--cCCeEEEEecC--------CcEEEeee-cCCcc
Q psy1242 489 DPPSGFASPESVV-MSRE-GVIVVNY--ERGHIAAFTMN--------GNRLRHES-HNDNL 536 (540)
Q Consensus 489 ~~~~~~~~v~~l~-fspd-g~~l~s~--~dg~I~lw~~~--------g~~l~~~~-~~~~V 536 (540)
.......+-..+. ++|+ |.+++++ .+++|.+|+++ ++.+.++. +.+.+
T Consensus 363 ~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~ 423 (543)
T 1nir_A 363 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 423 (543)
T ss_dssp ECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred ccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence 7522100101233 4677 6666665 47999999986 46777776 44443
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.58 E-value=3.1e-13 Score=135.30 Aligned_cols=228 Identities=11% Similarity=0.043 Sum_probs=147.1
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-c-Cccee--e
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-F-SQKLR--V 337 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-~-~~~~~--v 337 (540)
...++++++.+++|++||..+++........ .... .+.+++|+. +.+++.... ......+... . ..... .
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG---YDFV-DTAITSDCSNVVVTSDFCQ-TLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC---CCEE-EEEECSSSCEEEEEESTTC-EEEEEECSSSSCEEEEEEECS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCCC-eEEEEECCCCceeEEecccCC
Confidence 4556889999999999999876643332211 1122 678899997 444432222 2222221111 0 00000 0
Q ss_pred EEEE-EEEecCCCEEEEEEecC-C--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 338 RHNC-FVTTVDSRFLLACGFWD-N--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 338 ~~~~-~~~spdg~~llasgs~D-g--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.... ++++|+|++++ ++..+ + .|.+||+.+++.+..+ .. .....+++|+| +|++|
T Consensus 84 ~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~---------------~~-~~~~~~~~~sp----dg~~l 142 (331)
T 3u4y_A 84 SSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTI---------------PI-PYDAVGIAISP----NGNGL 142 (331)
T ss_dssp SCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEE---------------EC-CTTEEEEEECT----TSSCE
T ss_pred CCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEE---------------EC-CCCccceEECC----CCCEE
Confidence 1233 78899999754 55555 3 8999999999888776 33 34568999999 88755
Q ss_pred E-EEeCCCc-EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcE---EE
Q psy1242 414 A-SGSADCT-VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDL---LR 486 (540)
Q Consensus 414 ~-sgs~Dgt-V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~---~~ 486 (540)
+ ++..++. |.+|++....... ......+ .......+++|+|+|+++ +++..++.|.+|+. +++. +.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~------~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 215 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLF------DTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN 215 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEE------EEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred EEEecCCCceEEEEEECCCCcEe------ecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence 4 4556688 9999987421100 0001222 344568999999999955 55557889999976 6777 77
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcE
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNR 526 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~ 526 (540)
.+..+. .+..++|+|+|++|+.+ .++.|.+|++. |+.
T Consensus 216 ~~~~~~---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 216 AVGTNN---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEECSS---CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eccCCC---CCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 776543 56899999999977654 36789999988 444
No 143
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.57 E-value=3.5e-13 Score=137.19 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=118.4
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCe-------EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-------IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-------~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
..+++|+|+|+++++++..++.|++|++.... ....-. .......+...+.+++|+| +|+
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~sp----dg~ 223 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT---------PEAFKVAPGSGPRHLIFNS----DGK 223 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE---------EEEEECCTTCCEEEEEECT----TSS
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc---------ccceecCCCCCCeEEEEcC----CCC
Confidence 46789999999877777778999999887543 211100 0000023445678999999 999
Q ss_pred EEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeC---CC
Q psy1242 412 FIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAELGLVVSGSQL--GPVLVHTT---FG 482 (540)
Q Consensus 412 ~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~D--g~v~iw~~---~g 482 (540)
++++++ .+++|.+|++..... ..+..+ ..+.....+++|+|||++|+++..+ +.|.+|+. +|
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~---------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGML---------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEE---------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred EEEEEcCCCCeEEEEEecCCce---------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 887777 699999999874321 122222 3344567899999999988666654 88999854 45
Q ss_pred c--EEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC---CcEEEeee--cCCcceec
Q psy1242 483 D--LLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN---GNRLRHES--HNDNLQKT 539 (540)
Q Consensus 483 ~--~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~---g~~l~~~~--~~~~V~~v 539 (540)
+ .+..+.. .. .+..++|+|+|++|+++ .++.|.+|.++ |++..... +-..+.||
T Consensus 295 ~~~~~~~~~~-g~--~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v 357 (361)
T 3scy_A 295 TLTKVGYQLT-GI--HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL 357 (361)
T ss_dssp CEEEEEEEEC-SS--CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred cEEEeeEecC-CC--CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence 5 3445544 33 57899999999988875 46889997654 55544331 34456665
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.56 E-value=5.5e-13 Score=133.48 Aligned_cols=237 Identities=9% Similarity=0.024 Sum_probs=148.5
Q ss_pred EEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCC-ccccCCCCeeeccCCCCC--CccccccCCCc-Ccce--eeE
Q psy1242 266 VTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGN-LPLTLDPILTHPTSNNNA--PVPKRHLGDNF-SQKL--RVR 338 (540)
Q Consensus 266 ~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~-~~~s~D~~l~~~g~~~~~--~~~~~~~~~~~-~~~~--~v~ 338 (540)
+++++..+..|.+||..++.. ....... ..... +.+++|+..++++..... ....+.+.... .... ...
T Consensus 54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 129 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEPPKVVAIQEG----QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD 129 (331)
T ss_dssp EEEEESTTCEEEEEECSSSSCEEEEEEEC----SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred EEEEeCCCCeEEEEECCCCceeEEecccC----CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence 455666688999999987654 3222222 12223 789999986665433322 22222221110 0000 112
Q ss_pred EEEEEEecCCCEEEEEEecCCc-EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-E
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNS-FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-G 416 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgs-v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-g 416 (540)
..+++|+|||+++++++..++. |.+|++.....+.... ... ......+.+++|+| +|++++. +
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----------~~~-~~~~~~~~~~~~sp----dg~~l~v~~ 194 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG----------QEF-ISGGTRPFNITFTP----DGNFAFVAN 194 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE----------EEE-ECSSSSEEEEEECT----TSSEEEEEE
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC----------Ccc-ccCCCCccceEECC----CCCEEEEEe
Confidence 4788999999987788787788 9999998644332220 001 13345578999999 9986654 5
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcE--EEEecCC-
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDL--LRSLDPP- 491 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~--~~~l~~~- 491 (540)
..++.|.+||+.+... .+.+..+..+ ..+.+++|+|+|++++.++ .++.|.+|+. +++. +..+...
T Consensus 195 ~~~~~v~v~d~~~~~~--------~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 195 LIGNSIGILETQNPEN--------ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp TTTTEEEEEECSSTTS--------CEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred CCCCeEEEEECCCCcc--------cceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 5689999999875321 1115555543 5678899999999766554 5778888876 5665 4443322
Q ss_pred ---CCC-CCceEEEEeeCCCEEEE-e-cCCeEEEEecCCcEEEee
Q psy1242 492 ---SGF-ASPESVVMSREGVIVVN-Y-ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 492 ---~~~-~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~g~~l~~~ 530 (540)
... .....++|+|+|++|+. + .++.|.+|+++++.+...
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence 110 01245899999998765 3 457999999998776655
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.55 E-value=7.6e-14 Score=156.07 Aligned_cols=253 Identities=9% Similarity=-0.073 Sum_probs=150.2
Q ss_pred CcEEEEEccC-cc-----eEEEEcCCCCCcccCCCCcCCCC---------------------CCCCCccccCCCCeeecc
Q psy1242 263 PSVVTVTANH-QF-----AINRWNPDYAASIQSPSYAETPG---------------------SPPGNLPLTLDPILTHPT 315 (540)
Q Consensus 263 ~~~~lvs~s~-D~-----tv~~W~~~~~~~~~~~~~~~~v~---------------------~~~~~~~~s~D~~l~~~g 315 (540)
++..+++++. |+ +|++||..++.......+..... .....+.||+|+..++.+
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 3333777777 77 89999998766433322211100 113467899999876655
Q ss_pred CCCCCCccccccCCC---cCc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeee-EE
Q psy1242 316 SNNNAPVPKRHLGDN---FSQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI-VQ 388 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~---~~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~-~~ 388 (540)
+. .....+.+... ... .....+.+++|||||++ |+.++ ++.|++||+.+++.......+...+.... ..
T Consensus 127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~ 202 (741)
T 2ecf_A 127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEF 202 (741)
T ss_dssp ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCH
T ss_pred eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccce
Confidence 32 11111111111 000 01123678889999997 56665 67999999998876654421111000000 00
Q ss_pred EeeccCcceEEEEeccCccCCCcEEEEEeCCC---------------------------------cEEEEEcCC-Ccccc
Q psy1242 389 IIFGHYGVVTCLSRSECNITADCFIASGSADC---------------------------------TVLLWHWNA-RTQSI 434 (540)
Q Consensus 389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg---------------------------------tV~lWd~~~-~~~~~ 434 (540)
......+.+.+++||| ||++|++++.|+ .|.+||+.+ ..
T Consensus 203 v~~~~~~~~~~~~~Sp----Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--- 275 (741)
T 2ecf_A 203 VADEEMDRHTGYWWAP----DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--- 275 (741)
T ss_dssp HHHHHSCCCCSEEECT----TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC---
T ss_pred eeeeccccccceEECC----CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc---
Confidence 0000011257899999 999999998765 777888754 32
Q ss_pred cCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeC-CCcEEEEecCCCC-CC-CceEEEEee
Q psy1242 435 VGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQ-----LGPVLVHTT-FGDLLRSLDPPSG-FA-SPESVVMSR 504 (540)
Q Consensus 435 ~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~-----Dg~v~iw~~-~g~~~~~l~~~~~-~~-~v~~l~fsp 504 (540)
..... ..|...+.+++| |||+.|++++. +..|++|+. +++....+..+.. +. .+..++|+|
T Consensus 276 --------~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 276 --------TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp --------CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred --------eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 12222 257788999999 99999887664 456788876 6776666554432 11 346899999
Q ss_pred CCCEEEEe-cCCeEEEEe--cCCcEEEeee-cCCcc
Q psy1242 505 EGVIVVNY-ERGHIAAFT--MNGNRLRHES-HNDNL 536 (540)
Q Consensus 505 dg~~l~s~-~dg~I~lw~--~~g~~l~~~~-~~~~V 536 (540)
||++++++ .+|.+.+|. .+|+ +..+. ++..|
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v 381 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSV 381 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEE
Confidence 99987775 456666654 4566 55443 44444
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.55 E-value=8.6e-13 Score=133.37 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=145.2
Q ss_pred eeecCCcEEEEEcc--CcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC--CcCc
Q psy1242 258 VTLHMPSVVTVTAN--HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD--NFSQ 333 (540)
Q Consensus 258 ~~~~~~~~~lvs~s--~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~--~~~~ 333 (540)
+.+.+++.+.+++. .++.|.+|+..++......... ........+.+++|+..+.+++........+.+.. ....
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 34445554343332 3789999998654321111100 01223345788999975554432222222222211 0000
Q ss_pred c--------------eeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeec-cCcce
Q psy1242 334 K--------------LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFG-HYGVV 397 (540)
Q Consensus 334 ~--------------~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~V 397 (540)
. ....+.+++|+|||+ +++++..++.|++|++. +++..... .+.. ....+
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~~~g~~p 189 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQS-------------VLTMEAGFGP 189 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEE-------------EEECCTTCCE
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEee-------------eEEcCCCCCC
Confidence 0 001256789999999 78888889999999998 55543221 0012 22367
Q ss_pred EEEEeccCccCCCcEEEE-EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC------CCEEEEEEcCCCCEE-EEE
Q psy1242 398 TCLSRSECNITADCFIAS-GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE------QPVTSVAISAELGLV-VSG 469 (540)
Q Consensus 398 t~l~~sp~~~~dg~~l~s-gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~------~~V~~v~~spdg~~l-asg 469 (540)
..++|+| ||++|++ +..++.|.+|+++...+. ...+..+.... ..+.+++|+|+|++| +++
T Consensus 190 ~~~~~sp----dg~~l~v~~~~~~~v~v~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 190 RHLVFSP----DGQYAFLAGELSSQIASLKYDTQTGA-------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp EEEEECT----TSSEEEEEETTTTEEEEEEEETTTTE-------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred ceEEECC----CCCEEEEEeCCCCEEEEEEecCCCCc-------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 7899999 9986655 567899999998752221 11223333222 458899999999976 566
Q ss_pred eCCCcEEEEeC--CC--cEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242 470 SQLGPVLVHTT--FG--DLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 470 s~Dg~v~iw~~--~g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~ 523 (540)
..++.|.+|+. +| +.+..+..+.. .+..++|+|+|++|+++ .++.|.+|+++
T Consensus 259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 259 RGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 67899999965 33 44556655544 57899999999988774 35899999553
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.54 E-value=1.3e-13 Score=153.36 Aligned_cols=229 Identities=11% Similarity=0.044 Sum_probs=147.9
Q ss_pred cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC-----C------cCcceee----
Q psy1242 273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-----N------FSQKLRV---- 337 (540)
Q Consensus 273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~------~~~~~~v---- 337 (540)
++++++||..++.......+.+ ....+.||+||..++.+.+ .....+.+.. . ......+
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~SpdG~~la~~~~--~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNE----ETASLDFSPVGDRVAYVRN--HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTT----CCTTCEECTTSSEEEEEET--TEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred CCEEEEEECCCCceEEccCCcc----cccCCcCCCCCCEEEEEEC--CeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 4899999997765443333332 2345789999976665422 1111111111 0 0000001
Q ss_pred --------EEEEEEEecCCCEEEEEEe---------------------------------cCCcEEEEEccCCeEEEEEe
Q psy1242 338 --------RHNCFVTTVDSRFLLACGF---------------------------------WDNSFRVFSTDNARIVQIIF 376 (540)
Q Consensus 338 --------~~~~~~~spdg~~llasgs---------------------------------~Dgsv~iwd~~~g~~~~~l~ 376 (540)
.+.+++|||||++| ++++ .+..|++||+.+++......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCL-AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEE-EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred chhhhhcCCCceEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 13678899999974 5555 34679999999887654331
Q ss_pred cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEec--c
Q psy1242 377 GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLT--G 449 (540)
Q Consensus 377 ~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~--~ 449 (540)
. ..|...+.+++|+| ||++|++++.|+ +|.+||+.++. ....+. .
T Consensus 253 ~-------------~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~~~~~ 304 (706)
T 2z3z_A 253 G-------------EPKEKFLTNLSWSP----DENILYVAEVNRAQNECKVNAYDAETGR-----------FVRTLFVET 304 (706)
T ss_dssp C-------------SCTTCEEEEEEECT----TSSEEEEEEECTTSCEEEEEEEETTTCC-----------EEEEEEEEE
T ss_pred C-------------CCCceeEeeEEEEC----CCCEEEEEEeCCCCCeeEEEEEECCCCc-----------eeeEEEEcc
Confidence 0 25677899999999 999999988775 89999987631 122221 2
Q ss_pred CCC---CEEEEEEcC--CCCEEEEEeCCCcEEEEe--CCCcEEEEecCCCCCCCceE-EEEeeCCCEEEE-ec-CC----
Q psy1242 450 HEQ---PVTSVAISA--ELGLVVSGSQLGPVLVHT--TFGDLLRSLDPPSGFASPES-VVMSREGVIVVN-YE-RG---- 515 (540)
Q Consensus 450 h~~---~V~~v~~sp--dg~~lasgs~Dg~v~iw~--~~g~~~~~l~~~~~~~~v~~-l~fspdg~~l~s-~~-dg---- 515 (540)
+.. .+.+++|+| +|+++++++.||.++||. .++..++.+..+.. .+.. ++|+|+|+.|+. +. ++
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 222 246789999 999999999999998884 46788888877665 5666 799999998765 33 33
Q ss_pred eEEEEecCCcEEEeeecCCccee
Q psy1242 516 HIAAFTMNGNRLRHESHNDNLQK 538 (540)
Q Consensus 516 ~I~lw~~~g~~l~~~~~~~~V~~ 538 (540)
.|..|++++..+..+.+...+.+
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~~~~ 405 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESGMHR 405 (706)
T ss_dssp EEEEEETTCCCCEESCCSSSEEE
T ss_pred EEEEEEcCCCCceeccCCCceEE
Confidence 67777776544544444444433
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.54 E-value=2.6e-14 Score=159.37 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=142.0
Q ss_pred EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC--------ccccccCCC----cC--
Q psy1242 267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--------VPKRHLGDN----FS-- 332 (540)
Q Consensus 267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~--------~~~~~~~~~----~~-- 332 (540)
+++ +.|++|++||..+++......+..........+.||+||..++.++..... ...+.+... +.
T Consensus 31 ~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 109 (723)
T 1xfd_A 31 IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP 109 (723)
T ss_dssp CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC
Confidence 444 678999999998766544333221100123468899999877665332111 111111111 00
Q ss_pred cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC---------cceEEEEec
Q psy1242 333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY---------GVVTCLSRS 403 (540)
Q Consensus 333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~---------~~Vt~l~~s 403 (540)
......+.+++|||||+. ||.++ ++.|++||+.+++..+....+...+ .+.|+. +.+.+++||
T Consensus 110 ~~~~~~~~~~~~SPdG~~-la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~------~~~g~~~~v~~ee~~~~~~~~~~S 181 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV------IYNGLSDWLYEEEILKTHIAHWWS 181 (723)
T ss_dssp TCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTT------EEEEECCHHHHHTTSSSSEEEEEC
T ss_pred ccccccccccEECCCCCE-EEEEE-CCeEEEEECCCCceEEEecCCCCCc------eECcccceeEEEEeccCcceEEEC
Confidence 001111456788999996 57766 4899999999888776652211110 001111 134899999
Q ss_pred cCccCCCcEEEEEeCCC----------------------------------cEEEEEcCCCcccccCCCCCCcceEEecc
Q psy1242 404 ECNITADCFIASGSADC----------------------------------TVLLWHWNARTQSIVGETDTPTPRATLTG 449 (540)
Q Consensus 404 p~~~~dg~~l~sgs~Dg----------------------------------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~ 449 (540)
| ||++|++++.|+ +|.+||+.+. +....+..
T Consensus 182 p----Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-----------~~~~~l~~ 246 (723)
T 1xfd_A 182 P----DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-----------THDLEMMP 246 (723)
T ss_dssp T----TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-----------CCCEECCC
T ss_pred C----CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-----------ceeEEeeC
Confidence 9 999999988653 7888887653 22334443
Q ss_pred ------CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeC-CCcEEEEecCC-CCCCC--ceEEEEeeCCCEEEE--e-
Q psy1242 450 ------HEQPVTSVAISAELGLVVSGSQL----GPVLVHTT-FGDLLRSLDPP-SGFAS--PESVVMSREGVIVVN--Y- 512 (540)
Q Consensus 450 ------h~~~V~~v~~spdg~~lasgs~D----g~v~iw~~-~g~~~~~l~~~-~~~~~--v~~l~fspdg~~l~s--~- 512 (540)
|...+.+++|||||+++++.+.. ..|++|+. ++++...+..+ ..+.. ...++|+|||+.|+. +
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 36789999999999988776533 45777876 67766555432 23111 137899999997664 2
Q ss_pred cCC------eEEEEe-cCCc
Q psy1242 513 ERG------HIAAFT-MNGN 525 (540)
Q Consensus 513 ~dg------~I~lw~-~~g~ 525 (540)
.++ .|.+|+ ..+.
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~ 346 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNS 346 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCS
T ss_pred ccCCCcceeEEEEEeccCCC
Confidence 355 577777 4443
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.52 E-value=1.1e-13 Score=154.91 Aligned_cols=235 Identities=10% Similarity=-0.003 Sum_probs=152.5
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCCC---CcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--- 330 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~---~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--- 330 (540)
.+.+.+++..+++++. ++|++|+..++ .......+.. ....+.||+||..++.+++. ....+.+...
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~----~~~~~~~SPDG~~la~~~~~--~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG----FATDAKLSPKGGFVSFIRGR--NLWVIDLASGRQM 185 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS----CEEEEEECTTSSEEEEEETT--EEEEEETTTTEEE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc----ccccccCCCCCCEEEEEeCC--cEEEEecCCCCEE
Confidence 3455556555666665 89999999876 4433333332 23357899999876655321 1111111110
Q ss_pred ---cCcceee--------------EEEEEEEecCCCEEEEEEecCC---------------------------------c
Q psy1242 331 ---FSQKLRV--------------RHNCFVTTVDSRFLLACGFWDN---------------------------------S 360 (540)
Q Consensus 331 ---~~~~~~v--------------~~~~~~~spdg~~llasgs~Dg---------------------------------s 360 (540)
......+ ....++|||||++ |++++.|+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 0000000 0356889999997 46665555 7
Q ss_pred EEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-----CCcEEEEEcCCCcccc
Q psy1242 361 FRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-----DCTVLLWHWNARTQSI 434 (540)
Q Consensus 361 v~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-----DgtV~lWd~~~~~~~~ 434 (540)
|.+||+.+ ++....... ..|...+.+++| | ||++|++++. +..|.+||+.+
T Consensus 265 l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~-p----Dg~~l~~~~~~~~~~~~~i~~~d~~~----- 321 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLG-------------KEQDIYLARVNW-R----DPQHLSFQRQSRDQKKLDLVEVTLAS----- 321 (741)
T ss_dssp EEEECSSTTCCCEEECCC-------------SCSSEEEEEEEE-E----ETTEEEEEEEETTSSEEEEEEEETTT-----
T ss_pred EEEEECCCCCceEEecCC-------------CCcceEEEEEEe-C----CCCEEEEEEecccCCeEEEEEEECCC-----
Confidence 88889988 775443300 147788999999 9 9999987764 56899999876
Q ss_pred cCCCCCCcceEEeccCCC----CEEEEEEcCCCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEE-EEeeCCC
Q psy1242 435 VGETDTPTPRATLTGHEQ----PVTSVAISAELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESV-VMSREGV 507 (540)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~----~V~~v~~spdg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l-~fspdg~ 507 (540)
+++...+..+.. .+.+++|+|||+++++++.||.+.|| +.++. ...+..+.. .+..+ +|+|+|+
T Consensus 322 ------g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 322 ------NQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAG 392 (741)
T ss_dssp ------CCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTT
T ss_pred ------CceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCC
Confidence 334444544443 44688999999999999999988887 44566 778877765 56776 5999999
Q ss_pred EEEE-ec-CC--eEEEEecC--CcEEEeee
Q psy1242 508 IVVN-YE-RG--HIAAFTMN--GNRLRHES 531 (540)
Q Consensus 508 ~l~s-~~-dg--~I~lw~~~--g~~l~~~~ 531 (540)
.|+. +. ++ .+++|+++ |+.+..+.
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 7764 43 34 78888764 55444443
No 150
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.47 E-value=8.6e-12 Score=127.58 Aligned_cols=246 Identities=7% Similarity=0.023 Sum_probs=146.8
Q ss_pred eeecCCcEEEEEccCcceEEEEcCC-CCCcccCCCCcCCCCCCCCCccccCCCC--eeeccC-------C-----CCCCc
Q psy1242 258 VTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTS-------N-----NNAPV 322 (540)
Q Consensus 258 ~~~~~~~~~lvs~s~D~tv~~W~~~-~~~~~~~~~~~~~v~~~~~~~~~s~D~~--l~~~g~-------~-----~~~~~ 322 (540)
..+.+++..+++++.+ +|.+|+.. ++.......+. .......+.+++|+. ++.+++ . .....
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~--~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee--cCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 3455555556666766 99999985 44332221221 011123478899997 343332 0 11111
Q ss_pred cccccC--CCcCcce-------eeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEee-
Q psy1242 323 PKRHLG--DNFSQKL-------RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIF- 391 (540)
Q Consensus 323 ~~~~~~--~~~~~~~-------~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~- 391 (540)
....+. +...... .....+++|+|||++++++...++.|++|+++ +|+....- .+.
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~ 188 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------------SVDA 188 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-------------EEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee-------------eEec
Confidence 222221 1111111 12367889999999765555457899999998 77653211 012
Q ss_pred -ccCcceEEEEeccCccCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEec----cCCC------CEEEEE-
Q psy1242 392 -GHYGVVTCLSRSECNITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLT----GHEQ------PVTSVA- 458 (540)
Q Consensus 392 -~h~~~Vt~l~~sp~~~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h~~------~V~~v~- 458 (540)
.|...+..++|+| +|++|++++. +++|.+|+++..++..... ...+..+. +|.. .+.+++
T Consensus 189 ~~~g~~p~~~~~sp----dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 189 PDPGDHPRWVAMHP----TGNYLYALMEAGNRICEYVIDPATHMPVYT---HHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp SSTTCCEEEEEECT----TSSEEEEEETTTTEEEEEEECTTTCCEEEE---EEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred CCCCCCCCEeEECC----CCCEEEEEECCCCeEEEEEEeCCCCcEEEc---cceEEcCCCCcCCcccccccccccccEEE
Confidence 2456789999999 9999887775 7899999876422110000 00011121 2232 588999
Q ss_pred EcCCCCEEEEEeCCC------cEEEEeC--CCcEEE---EecCCCCCCCceEEEEee---CCCEEEEec--CCeEEEEec
Q psy1242 459 ISAELGLVVSGSQLG------PVLVHTT--FGDLLR---SLDPPSGFASPESVVMSR---EGVIVVNYE--RGHIAAFTM 522 (540)
Q Consensus 459 ~spdg~~lasgs~Dg------~v~iw~~--~g~~~~---~l~~~~~~~~v~~l~fsp---dg~~l~s~~--dg~I~lw~~ 522 (540)
|+|||++|++++.+. .|.+|+. +|++.. ....+.. .+..++|+| +|++|+++. ++.|.+|++
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999999887765432 7999964 566543 2333333 467899999 899998853 489999999
Q ss_pred CCcEEE
Q psy1242 523 NGNRLR 528 (540)
Q Consensus 523 ~g~~l~ 528 (540)
+++.|.
T Consensus 340 ~~~~l~ 345 (365)
T 1jof_A 340 KDEFLH 345 (365)
T ss_dssp ETTEEE
T ss_pred chhhCc
Confidence 866554
No 151
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=1.4e-11 Score=120.98 Aligned_cols=232 Identities=9% Similarity=0.091 Sum_probs=151.9
Q ss_pred ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCC---CCCCCCccc-cCCCCeeeccCCCCCCccccccCCC----c
Q psy1242 260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETP---GSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDN----F 331 (540)
Q Consensus 260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v---~~~~~~~~~-s~D~~l~~~g~~~~~~~~~~~~~~~----~ 331 (540)
+..++.+.++.+.++.|++|++.... .......+.. ......+.+ ..++.+.+++.............+. +
T Consensus 37 ~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~ 115 (286)
T 1q7f_A 37 VNAQNDIIVADTNNHRIQIFDKEGRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF 115 (286)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEECCCCcE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe
Confidence 34445557787888999999986432 1111111000 011123455 4667666654210111111110000 1
Q ss_pred CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 332 ~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
.........+++++++|+ ++++...++.|.+||.. ++.+..+.. .++...+.+|++++ +|+
T Consensus 116 ~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------~~~~~~p~~i~~~~----~g~ 176 (286)
T 1q7f_A 116 GATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC-------------SKHLEFPNGVVVND----KQE 176 (286)
T ss_dssp CTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC-------------TTTCSSEEEEEECS----SSE
T ss_pred cCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCC-------------CCccCCcEEEEECC----CCC
Confidence 000011257788899998 67787778999999965 666555510 14456789999999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCcEEEEe
Q psy1242 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAELGLVVSGSQLG-PVLVHTTFGDLLRSL 488 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg-~v~iw~~~g~~~~~l 488 (540)
.+++.+.++.|++|+... +.+..+..+ ...+.+++++++|.++++...++ .|.+|+.+++.+..+
T Consensus 177 l~v~~~~~~~i~~~~~~g------------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEG------------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL 244 (286)
T ss_dssp EEEEEGGGTEEEEEETTC------------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred EEEEECCCCEEEEEcCCC------------CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 888888899999999643 334445333 36789999999999988888886 999999999888888
Q ss_pred cCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 489 DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
..+.....+.+++++|+|+++++..+++|.+|+..
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred cccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence 66544224679999999998888778999999875
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.46 E-value=1.6e-12 Score=151.59 Aligned_cols=229 Identities=7% Similarity=-0.023 Sum_probs=154.9
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCC--CCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccc--------c
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR--------H 326 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~--~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~--------~ 326 (540)
.+.+..+ .++++++.|+++++|.... ........|. . .....+++|+..++.+.+. ....+ .
T Consensus 208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~----~~~~~~SpDG~~la~~~~~--~i~~~d~~~~~l~~ 279 (1045)
T 1k32_A 208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D----YYPRHLNTDGRRILFSKGG--SIYIFNPDTEKIEK 279 (1045)
T ss_dssp EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S----SCEEEEEESSSCEEEEETT--EEEEECTTTCCEEE
T ss_pred ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-C----cceeeEcCCCCEEEEEeCC--EEEEecCCceEeee
Confidence 3444445 5566777889999997542 2222222222 1 1235788999765544211 11111 1
Q ss_pred cCCCcCc------ceeeEEEEEEEe-cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceE
Q psy1242 327 LGDNFSQ------KLRVRHNCFVTT-VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVT 398 (540)
Q Consensus 327 ~~~~~~~------~~~v~~~~~~~s-pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt 398 (540)
+...... ...-.+.+++|+ |||+. |++++ ++.+.+|++.+++... + ..|.+ .+.
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~~-~---------------~~~~~~~~~ 341 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK-V---------------PEPLRIRYV 341 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE-C---------------SCCSCEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceEE-c---------------cCCCcceEE
Confidence 1110000 000125678899 99997 46665 8899999998776543 4 56767 889
Q ss_pred EEEeccCccCCCcEEEEEeCCCcEE-EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 399 CLSRSECNITADCFIASGSADCTVL-LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~sgs~DgtV~-lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
+++|+ +|+.|++++.+..+. +|+.... ....+.+|...+.+++|+|||+.|++++.++.|++
T Consensus 342 ~~~~s-----dg~~l~~~s~~~~l~~~~d~~~~------------~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~ 404 (1045)
T 1k32_A 342 RRGGD-----TKVAFIHGTREGDFLGIYDYRTG------------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT 404 (1045)
T ss_dssp EECSS-----SEEEEEEEETTEEEEEEEETTTC------------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeeEc-----CCCeEEEEECCCceEEEEECCCC------------CceEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence 99997 478898888888888 8887652 23445588889999999999999999999999999
Q ss_pred EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cC----------CeEEEEecCCcEEEee
Q psy1242 478 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ER----------GHIAAFTMNGNRLRHE 530 (540)
Q Consensus 478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d----------g~I~lw~~~g~~l~~~ 530 (540)
|+. +|+....+..|.+ .+.+++|||||++|+++ .+ +.|++|++++..+..+
T Consensus 405 ~d~~tg~~~~~~~~~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 405 VDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp EETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred EECCCCceEEeccCCCC--CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 987 7777777767776 67899999999998874 32 4899999985545444
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.44 E-value=3.1e-12 Score=142.52 Aligned_cols=235 Identities=7% Similarity=-0.110 Sum_probs=137.0
Q ss_pred eecCCcEEEEEccC---------cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242 259 TLHMPSVVTVTANH---------QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD 329 (540)
Q Consensus 259 ~~~~~~~~lvs~s~---------D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~ 329 (540)
.+++++..+++++. +..+.+||..++.........+ .......+.||+||..++.++. .....+.+..
T Consensus 67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~ 143 (723)
T 1xfd_A 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG 143 (723)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS
T ss_pred EECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEEEC--CeEEEEECCC
Confidence 33344444666554 3788899998765422221110 0111345789999976665532 1111111111
Q ss_pred Cc------Ccceee----------------EEEEEEEecCCCEEEEEEecCC----------------------------
Q psy1242 330 NF------SQKLRV----------------RHNCFVTTVDSRFLLACGFWDN---------------------------- 359 (540)
Q Consensus 330 ~~------~~~~~v----------------~~~~~~~spdg~~llasgs~Dg---------------------------- 359 (540)
.. .+...+ ...+++|||||++| +.++.|+
T Consensus 144 g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 222 (723)
T 1xfd_A 144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL-AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (723)
T ss_dssp SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE-EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE-EEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence 00 000000 12678999999974 5555442
Q ss_pred ------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC----CCcEEEEEcCC
Q psy1242 360 ------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA----DCTVLLWHWNA 429 (540)
Q Consensus 360 ------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~----DgtV~lWd~~~ 429 (540)
+|++||+.+++....+..+.. +..|...+.+++|+| ||++|++.+. +..|.+||+.+
T Consensus 223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 223 SENPSISLHVIGLNGPTHDLEMMPPDD---------PRMREYYITMVKWAT----STKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCC---------GGGSSEEEEEEEESS----SSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCCCeeEEEEEECCCCceeEEeeCCcc---------CCCccceeEEEEEeC----CCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 688888887775444421110 012467899999999 9998877653 35799999876
Q ss_pred CcccccCCCCCCcceEEecc-CCCCEE----EEEEcCCCCEEEE--EeCCC----c--EEEEe-CCCcE---EEEecCCC
Q psy1242 430 RTQSIVGETDTPTPRATLTG-HEQPVT----SVAISAELGLVVS--GSQLG----P--VLVHT-TFGDL---LRSLDPPS 492 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~-h~~~V~----~v~~spdg~~las--gs~Dg----~--v~iw~-~~g~~---~~~l~~~~ 492 (540)
+ ++...+.. +...+. .++|+|||+.|+. +..++ . |.+|+ .++.. ...+..+.
T Consensus 290 g-----------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 358 (723)
T 1xfd_A 290 G-----------VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD 358 (723)
T ss_dssp C-----------CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred C-----------cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence 2 33444433 334433 7899999997664 45677 4 55566 44433 45554333
Q ss_pred CCCCceE-EEEeeCCCEEEE-ecC---CeEEEEecC
Q psy1242 493 GFASPES-VVMSREGVIVVN-YER---GHIAAFTMN 523 (540)
Q Consensus 493 ~~~~v~~-l~fspdg~~l~s-~~d---g~I~lw~~~ 523 (540)
. .+.. ++|+|+|+.|+. +.+ +.+++|+++
T Consensus 359 ~--~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 359 W--DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp S--CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred e--EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 2 3444 699999999875 433 788999875
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.44 E-value=5.9e-12 Score=127.20 Aligned_cols=205 Identities=7% Similarity=0.055 Sum_probs=120.5
Q ss_pred CCccccCCCCeeeccCC-CCCCccccccCCCc-Cc--c---eeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeE-
Q psy1242 301 GNLPLTLDPILTHPTSN-NNAPVPKRHLGDNF-SQ--K---LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARI- 371 (540)
Q Consensus 301 ~~~~~s~D~~l~~~g~~-~~~~~~~~~~~~~~-~~--~---~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~- 371 (540)
..+.+++|+.+.+++.. .......+.+.... .. . .......++++|||++|++++..++++.+|++. ++..
T Consensus 43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 35788999985554421 11122222221100 00 0 111246788999999765555578999999996 3332
Q ss_pred -EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC
Q psy1242 372 -VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450 (540)
Q Consensus 372 -~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h 450 (540)
+..+........ ...+...+.+++|+| +|+.++++..++.|.+|++... +. ......+..+
T Consensus 123 ~~~~~~~~~~~p~------~~~~~~~~~~~~~sp----dg~l~v~~~~~~~v~~~~~~~~-g~-------~~~~~~~~~~ 184 (347)
T 3hfq_A 123 LTDTVQHSGHGPR------PEQDGSHIHYTDLTP----DNRLAVIDLGSDKVYVYNVSDA-GQ-------LSEQSVLTME 184 (347)
T ss_dssp EEEEEECCCCCSS------TTCSSCCEEEEEECT----TSCEEEEETTTTEEEEEEECTT-SC-------EEEEEEEECC
T ss_pred ecceeecCCCCCC------ccccCCCceEEEECC----CCcEEEEeCCCCEEEEEEECCC-Cc-------EEEeeeEEcC
Confidence 222200000000 001233588999999 8996666677899999998721 10 1122222222
Q ss_pred -CCCEEEEEEcCCCCEEEE-EeCCCcEEEEeC---CCcE--EEEecCCCCC----CCceEEEEeeCCCEEEE--ecCCeE
Q psy1242 451 -EQPVTSVAISAELGLVVS-GSQLGPVLVHTT---FGDL--LRSLDPPSGF----ASPESVVMSREGVIVVN--YERGHI 517 (540)
Q Consensus 451 -~~~V~~v~~spdg~~las-gs~Dg~v~iw~~---~g~~--~~~l~~~~~~----~~v~~l~fspdg~~l~s--~~dg~I 517 (540)
...+..++|+|+|+++++ +..++.+.+|+. +++. +..+...... ..+..++|+|+|++|+. ..++.|
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 336788999999996555 567888999854 3543 2333322210 14788999999998754 347899
Q ss_pred EEEecC
Q psy1242 518 AAFTMN 523 (540)
Q Consensus 518 ~lw~~~ 523 (540)
.+|+++
T Consensus 265 ~v~~~~ 270 (347)
T 3hfq_A 265 AVFAVT 270 (347)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999986
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.43 E-value=9.2e-14 Score=155.06 Aligned_cols=249 Identities=12% Similarity=0.018 Sum_probs=143.1
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC--------CCCccccccCCCcC--
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN--------NAPVPKRHLGDNFS-- 332 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~--------~~~~~~~~~~~~~~-- 332 (540)
++.+++++ .|++|++|+..++.......+..........+.||+||..++.++.. ......+.+.....
T Consensus 26 dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 26 GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 34334444 58999999998876544333221100113467899999877655321 01111111111100
Q ss_pred -cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe-cccceeeeeeEEEeeccCcc---------eEEEE
Q psy1242 333 -QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF-GHYGVVTSRIVQIIFGHYGV---------VTCLS 401 (540)
Q Consensus 333 -~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~-~~~~~v~~~~~~~l~~h~~~---------Vt~l~ 401 (540)
..+.-.+..++|||||+. ||.++ |+.|++|++.+++..+... ++...+ +.||.+. ..+++
T Consensus 105 ~~~l~~~~~~~~~SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v-------~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 105 GNELPRPIQYLCWSPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKI-------FNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp SSCCCSSBCCEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTE-------EESSCCHHHHHHTTCSSCCEE
T ss_pred ceecCcccccceECCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe-------EcccccceeeeecccCcccEE
Confidence 111112567889999997 56664 8899999999887654321 111111 1233322 25899
Q ss_pred eccCccCCCcEEEEEeCCC----------------------------------cEEEEEcCCCcccccCCCCCCcceEEe
Q psy1242 402 RSECNITADCFIASGSADC----------------------------------TVLLWHWNARTQSIVGETDTPTPRATL 447 (540)
Q Consensus 402 ~sp~~~~dg~~l~sgs~Dg----------------------------------tV~lWd~~~~~~~~~~~~~~~~~~~~l 447 (540)
||| ||++|++++.|. +|++||+.+...... ........+
T Consensus 176 wSP----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~---~~~~~~~~~ 248 (719)
T 1z68_A 176 WSP----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP---QEVPVPAMI 248 (719)
T ss_dssp ECT----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC---EECCCCHHH
T ss_pred ECC----CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce---eEccCCccC
Confidence 999 999999988652 788998875321000 000000224
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeC--CC--cEEEEe----C-CCcEEEEe----cCCCCCCCce-----EEEEeeCCCEE
Q psy1242 448 TGHEQPVTSVAISAELGLVVSGSQ--LG--PVLVHT----T-FGDLLRSL----DPPSGFASPE-----SVVMSREGVIV 509 (540)
Q Consensus 448 ~~h~~~V~~v~~spdg~~lasgs~--Dg--~v~iw~----~-~g~~~~~l----~~~~~~~~v~-----~l~fspdg~~l 509 (540)
.+|...+.+++||||++++++... ++ .|.+|+ . +|++...+ ..+.. .+. .++|+|||+.+
T Consensus 249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG--WAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS--CSSSSSCCCCEECTTSSCE
T ss_pred CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc--eEccccCCccEECCCCCeE
Confidence 578889999999999887777543 22 256677 5 45444333 24554 344 78999999965
Q ss_pred EE--e-cCC--eEEEEecCCcEEEee
Q psy1242 510 VN--Y-ERG--HIAAFTMNGNRLRHE 530 (540)
Q Consensus 510 ~s--~-~dg--~I~lw~~~g~~l~~~ 530 (540)
+. + .+| .|.+|++++.....+
T Consensus 327 ~~~~~~~~g~~~l~~~~~~~~~~~~l 352 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDTVENAIQI 352 (719)
T ss_dssp EEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred EEEEEccCCceEEEEEECCCCceEec
Confidence 43 3 334 577778775433333
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.42 E-value=1.2e-11 Score=137.38 Aligned_cols=167 Identities=12% Similarity=0.094 Sum_probs=114.0
Q ss_pred EEEEEEEecCCCEEEEEEecCC-----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccC---cceEEEEeccCccCC
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDN-----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY---GVVTCLSRSECNITA 409 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dg-----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~---~~Vt~l~~sp~~~~d 409 (540)
.+.+++|+|||+. |++++.++ .|++||+.+++....+.. ..+. ..+.+++|+|. .+
T Consensus 259 ~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~sp~--~d 322 (706)
T 2z3z_A 259 FLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFV-------------ETDKHYVEPLHPLTFLPG--SN 322 (706)
T ss_dssp EEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEE-------------EECSSCCCCCSCCEECTT--CS
T ss_pred eEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEE-------------ccCCCeECccCCceeecC--CC
Confidence 3678899999997 46665565 899999998844433310 1122 23467899871 04
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEE-EEEcCCCCEEEEEeCC-C----cEEEEeCCCc
Q psy1242 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS-VAISAELGLVVSGSQL-G----PVLVHTTFGD 483 (540)
Q Consensus 410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~lasgs~D-g----~v~iw~~~g~ 483 (540)
|+++++++.|+.++||.++.. +..+..+..|...+.+ ++|+|+++.|+.++.+ + .|..|+..+.
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~----------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTT----------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETT----------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CEEEEEEccCCccEEEEEECC----------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 778999999999999998631 2456777888888877 7999999977665544 4 3444555333
Q ss_pred EEEEecCCCCCCCceEEEEeeCCCEEEEe-cC----CeEEEEecCCcEEEeeecC
Q psy1242 484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ER----GHIAAFTMNGNRLRHESHN 533 (540)
Q Consensus 484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d----g~I~lw~~~g~~l~~~~~~ 533 (540)
.+..+. +.. .+.+++|+|+|++++.. ++ +.|.+|++++..+..+.+.
T Consensus 393 ~~~~l~-~~~--~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~~~ 444 (706)
T 2z3z_A 393 KTKDLT-PES--GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAK 444 (706)
T ss_dssp CCEESC-CSS--SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEEECC
T ss_pred Cceecc-CCC--ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeecccc
Confidence 345554 344 57899999999988763 22 5699999985544433333
No 157
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.42 E-value=1.1e-11 Score=136.60 Aligned_cols=251 Identities=11% Similarity=-0.074 Sum_probs=150.4
Q ss_pred eeecCCcEEEEEc--cCcceEEEEcCC-CCCcccCCCCcCCCCCC-----CCCccc--cCCCCe-eeccCCCCCCccccc
Q psy1242 258 VTLHMPSVVTVTA--NHQFAINRWNPD-YAASIQSPSYAETPGSP-----PGNLPL--TLDPIL-THPTSNNNAPVPKRH 326 (540)
Q Consensus 258 ~~~~~~~~~lvs~--s~D~tv~~W~~~-~~~~~~~~~~~~~v~~~-----~~~~~~--s~D~~l-~~~g~~~~~~~~~~~ 326 (540)
+.+..+.++.++. +.++..++|... ++.......+...+... ...+.+ |+|+.. ++.++..........
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~ 108 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFE 108 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEEC
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEc
Confidence 3444556667776 668889999853 33222333333222210 112334 488865 554432211111111
Q ss_pred cC----CC---cCcc----eeeEEEEEEEecCCCEEEEEEecC----------CcEEEEEccC------CeEEEEEeccc
Q psy1242 327 LG----DN---FSQK----LRVRHNCFVTTVDSRFLLACGFWD----------NSFRVFSTDN------ARIVQIIFGHY 379 (540)
Q Consensus 327 ~~----~~---~~~~----~~v~~~~~~~spdg~~llasgs~D----------gsv~iwd~~~------g~~~~~l~~~~ 379 (540)
+. +. +... .......++|+|||+. |++++.| ..|++||+.+ ++. ..+
T Consensus 109 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l---- 182 (662)
T 3azo_A 109 PDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL---- 182 (662)
T ss_dssp TTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES----
T ss_pred CCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE----
Confidence 11 10 1110 1235678899999997 4666655 5899999987 543 344
Q ss_pred ceeeeeeEEEee-ccCcceEEEEeccCccCCCcEEEEEeCC--------CcEEEEEcC-CCcccccCCCCCCcceEEecc
Q psy1242 380 GVVTSRIVQIIF-GHYGVVTCLSRSECNITADCFIASGSAD--------CTVLLWHWN-ARTQSIVGETDTPTPRATLTG 449 (540)
Q Consensus 380 ~~v~~~~~~~l~-~h~~~Vt~l~~sp~~~~dg~~l~sgs~D--------gtV~lWd~~-~~~~~~~~~~~~~~~~~~l~~ 449 (540)
. .+...+..++||| ||++|+.++.+ ..|.+||+. ++.. .+......+
T Consensus 183 -----------~~~~~~~~~~~~~Sp----DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~--------~~~~~l~~~ 239 (662)
T 3azo_A 183 -----------SDDAHRFVTGPRLSP----DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF--------ADTRTLLGG 239 (662)
T ss_dssp -----------SCSCSSEECCCEECT----TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE--------EEEEEEEEE
T ss_pred -----------EecCCCcccCceECC----CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc--------cccEEeCCC
Confidence 4 5567788899999 99999988755 379999987 3210 023334455
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEE--EeC-CCcEEEEecCCCCC-----C-CceEEEEeeCCCEEEEecCCeEEEE
Q psy1242 450 HEQPVTSVAISAELGLVVSGSQLGPVLV--HTT-FGDLLRSLDPPSGF-----A-SPESVVMSREGVIVVNYERGHIAAF 520 (540)
Q Consensus 450 h~~~V~~v~~spdg~~lasgs~Dg~v~i--w~~-~g~~~~~l~~~~~~-----~-~v~~l~fspdg~~l~s~~dg~I~lw 520 (540)
|...+..++|+|||+++++++.++...| |+. +++.......+... . .+..++|+|++++++++.++.+.+|
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG 319 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence 6788999999999998888888885544 555 55544333322220 0 1567999999999988644878888
Q ss_pred --ecCCcEEEeee-cCCcce
Q psy1242 521 --TMNGNRLRHES-HNDNLQ 537 (540)
Q Consensus 521 --~~~g~~l~~~~-~~~~V~ 537 (540)
++++..+..+. +.+.+.
T Consensus 320 ~~d~~~~~~~~l~~~~~~~~ 339 (662)
T 3azo_A 320 ILDPESGELVDAAGPWTEWA 339 (662)
T ss_dssp EEETTTTEEEECCSSCCEEE
T ss_pred EEECCCCcEEEecCCCCeEE
Confidence 66665566554 444443
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.42 E-value=3.8e-12 Score=148.35 Aligned_cols=185 Identities=8% Similarity=-0.087 Sum_probs=129.2
Q ss_pred cceeeec-CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcc-ccccCCC--
Q psy1242 255 NTYVTLH-MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-KRHLGDN-- 330 (540)
Q Consensus 255 ~~~~~~~-~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~-~~~~~~~-- 330 (540)
...+.+. +++..+++++ ++.+.+|+..++.......|.+ .....+.|+ |+..++.++.. .... ...+...
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~s-dg~~l~~~s~~-~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGD-TKVAFIHGTRE-GDFLGIYDYRTGKA 371 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSC---EEEEEECSS-SEEEEEEEETT-EEEEEEEETTTCCE
T ss_pred cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCc---ceEEeeeEc-CCCeEEEEECC-CceEEEEECCCCCc
Confidence 4555666 6666566665 7899999987655333333331 012246678 88655544321 1111 1111110
Q ss_pred --cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242 331 --FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT 408 (540)
Q Consensus 331 --~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~ 408 (540)
+. .....+.+++|+|||++ |++++.++.|++||+.+++....+ .+|.+.+.+++|+|
T Consensus 372 ~~l~-~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~---------------~~~~~~v~~~~~Sp---- 430 (1045)
T 1k32_A 372 EKFE-ENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIE---------------RSREAMITDFTISD---- 430 (1045)
T ss_dssp EECC-CCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEE---------------ECSSSCCCCEEECT----
T ss_pred eEec-CCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEec---------------cCCCCCccceEECC----
Confidence 11 11233678889999996 688889999999999999877766 68889999999999
Q ss_pred CCcEEEEEeCCC----------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242 409 ADCFIASGSADC----------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH 478 (540)
Q Consensus 409 dg~~l~sgs~Dg----------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw 478 (540)
||++|++++.++ .|++||+.+ ++ ...+.+|...+.+++|+|||+.|++++.++...+|
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-----------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-----------RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTT-----------TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCC-----------Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 999999887654 999999875 22 56778888889999999999999999987776655
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.42 E-value=1.8e-11 Score=123.06 Aligned_cols=172 Identities=8% Similarity=-0.039 Sum_probs=126.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS- 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs- 417 (540)
...++++|+|+++++++..++.|.+||..+++.+..+..+...-.. ......+.+++|+| +|+++++++
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~----dg~~l~~~~~ 160 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE------EVRPLQPRELVADD----ATNTVYISGI 160 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS------SCCCCEEEEEEEET----TTTEEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc------ccCCCCCceEEECC----CCCEEEEEec
Confidence 3567889999987788888899999999999988877321100000 00001278899999 888777766
Q ss_pred -CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC--
Q psy1242 418 -ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG-- 493 (540)
Q Consensus 418 -~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~-- 493 (540)
.++.|.+||..+ .+.+..+..+...+.+++|+|+++.+++++.++.+.+|+. +++.+..+.....
T Consensus 161 ~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 229 (353)
T 3vgz_A 161 GKESVIWVVDGGN-----------IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK 229 (353)
T ss_dssp SSSCEEEEEETTT-----------TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS
T ss_pred CCCceEEEEcCCC-----------CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC
Confidence 488999999875 3455666656666889999999999999999999999876 7777777765221
Q ss_pred CCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEeee
Q psy1242 494 FASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~~ 531 (540)
...+..++|+|+|+.++.+ .++.|.+||+. ++.+....
T Consensus 230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 1146789999999977664 35899999986 77766654
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.39 E-value=2.1e-12 Score=140.51 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=115.6
Q ss_pred EEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 340 NCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
.+++|+|||++ |++++.| +.|++||+.+++.. .+ .+|.+.+..++|+| ||+.|++
T Consensus 153 ~~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~-~l---------------~~~~~~~~~~~~Sp----DG~~l~~ 211 (582)
T 3o4h_A 153 FGFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLR-VF---------------DSGEGSFSSASISP----GMKVTAG 211 (582)
T ss_dssp CEEEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCE-EE---------------CCSSCEEEEEEECT----TSCEEEE
T ss_pred ceEEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCce-Ee---------------ecCCCccccceECC----CCCEEEE
Confidence 57889999997 5666666 78999999988764 45 67888899999999 9999998
Q ss_pred EeCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE--------EcCCCCEEEEEeCCCcEEEEeCCCcEE
Q psy1242 416 GSADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA--------ISAELGLVVSGSQLGPVLVHTTFGDLL 485 (540)
Q Consensus 416 gs~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~--------~spdg~~lasgs~Dg~v~iw~~~g~~~ 485 (540)
++.++ +|.+||+.+ +++. .+.+|...+..++ |+|||.++++++.||++++|.. |+.+
T Consensus 212 ~~~~~~~~i~~~d~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~ 278 (582)
T 3o4h_A 212 LETAREARLVTVDPRD-----------GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERV 278 (582)
T ss_dssp EECSSCEEEEEECTTT-----------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEE
T ss_pred ccCCCeeEEEEEcCCC-----------CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCee
Confidence 88999 899999876 2344 6677777776677 9999999999999999999988 7765
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEEe-cC---CeEEEEecCC
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVNY-ER---GHIAAFTMNG 524 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~d---g~I~lw~~~g 524 (540)
. .+.+ .+.+++|+ +|++++++ ++ ..+.+|+.++
T Consensus 279 ~---~~~~--~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 279 E---APQG--NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp C---CCSS--EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred c---cCCC--ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 5 2334 57899999 99988874 33 4577777766
No 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.39 E-value=1.3e-11 Score=122.97 Aligned_cols=171 Identities=10% Similarity=-0.036 Sum_probs=122.7
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS- 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs- 417 (540)
..+++++|+|+.++++++.++.|.+||+.+++.+..+..... ..|...+.+++|+| +|++|++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~----dg~~l~~~~~ 101 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----------EERVKSLFGAALSP----DGKTLAIYES 101 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----------TEEEECTTCEEECT----TSSEEEEEEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----------ccccccccceEECC----CCCEEEEEec
Confidence 345788999998778888889999999999988776621000 00223677899999 999888886
Q ss_pred -----------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242 418 -----------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL 485 (540)
Q Consensus 418 -----------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~ 485 (540)
.++.|.+||+.+ ++.+..+.. ...+.+++|+|+++.++++ ++.|.+|+. +++.+
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~-----------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAET-----------LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTT-----------TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred ccccccccccccCceEEEEECCC-----------CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence 679999999865 234444443 4457789999999988877 688999876 67666
Q ss_pred EEecCCC--CC--------------------------------------------------------------CCceEEE
Q psy1242 486 RSLDPPS--GF--------------------------------------------------------------ASPESVV 501 (540)
Q Consensus 486 ~~l~~~~--~~--------------------------------------------------------------~~v~~l~ 501 (540)
..+..+. .. ..+.+++
T Consensus 168 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 247 (337)
T 1pby_B 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247 (337)
T ss_dssp EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence 6554332 00 0234589
Q ss_pred EeeCCCEEEEecCCeEEEEecC-CcEEEeeecCCccee
Q psy1242 502 MSREGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQK 538 (540)
Q Consensus 502 fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~~ 538 (540)
|+|+|++++++ ++.|.+||++ ++.+........+.+
T Consensus 248 ~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~ 284 (337)
T 1pby_B 248 VNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYS 284 (337)
T ss_dssp ECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred ECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceee
Confidence 99999998888 7999999987 566666554444443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.37 E-value=1.5e-11 Score=123.30 Aligned_cols=169 Identities=7% Similarity=-0.044 Sum_probs=120.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-----CcceEEEEeccCccCCCcEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-----YGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-----~~~Vt~l~~sp~~~~dg~~l 413 (540)
...++++|+|+.+++++..++.|.+||+.+++.+..+.. ++ ...+.+++|+| +|++|
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~--------------~~~~~~~~~~~~~~~~sp----dg~~l 106 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL--------------SSVPGEVGRSMYSFAISP----DGKEV 106 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES--------------CCSTTEEEECSSCEEECT----TSSEE
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc--------------ccccccccccccceEECC----CCCEE
Confidence 356788999998777877899999999999988776621 11 23478899999 99999
Q ss_pred EEEeCC------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q psy1242 414 ASGSAD------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT- 480 (540)
Q Consensus 414 ~sgs~D------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~- 480 (540)
++++.+ +.|.+||+.+... .+.+..+. +...+.+++|+|+|+ +++++. .|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~ 174 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVK 174 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred EEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence 998865 8999999875321 12233343 334688999999999 555543 4888876
Q ss_pred CCcEEEEecCCCC------------------------------------------------------------------C
Q psy1242 481 FGDLLRSLDPPSG------------------------------------------------------------------F 494 (540)
Q Consensus 481 ~g~~~~~l~~~~~------------------------------------------------------------------~ 494 (540)
+++.+..+..+.. .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 7777776654320 0
Q ss_pred CCceEEEEee-CCCEEEEecCCeEEEEecC-CcEEEeeecCCccee
Q psy1242 495 ASPESVVMSR-EGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQK 538 (540)
Q Consensus 495 ~~v~~l~fsp-dg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~~ 538 (540)
..+..++|+| +|++++++ ++.|.+||+. ++.+........+.+
T Consensus 255 ~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~ 299 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYC 299 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccc
Confidence 0234677889 99999888 8999999987 666666654444444
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.34 E-value=1.3e-10 Score=117.95 Aligned_cols=239 Identities=10% Similarity=0.093 Sum_probs=133.2
Q ss_pred ccCcceEEEEcCC--CCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC---CCCccccccCCC---cCcc-----ee
Q psy1242 270 ANHQFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN---NAPVPKRHLGDN---FSQK-----LR 336 (540)
Q Consensus 270 ~s~D~tv~~W~~~--~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~---~~~~~~~~~~~~---~~~~-----~~ 336 (540)
.+.+..|.+|... ++......... ......+.+++|+..+.+++.. ......+.+... .... ..
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 3557788888654 33322111111 2233457899999766555432 112222222110 0000 01
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe---cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF---GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~---~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.....+++ ++++|+++...+++|.+|++.....+..+. .+...- ......+...+.+++|+| +|++|
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~sp----dg~~l 169 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG----PDKERQTMPHLHCVRITP----DGKYL 169 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC----SCTTTCSSCCEEEEEECT----TSSEE
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC----CCccccCCCcceEEEECC----CCCEE
Confidence 12345555 888877777678999999997543321110 000000 000011234468899999 99877
Q ss_pred EEEe-CCCcEEEEEcCCCcccccCCCCCCcc----eEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcE--
Q psy1242 414 ASGS-ADCTVLLWHWNARTQSIVGETDTPTP----RATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDL-- 484 (540)
Q Consensus 414 ~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~----~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~-- 484 (540)
++++ .++.|.+|++....... ....... ......+.....+++|+|+|+++++++ .++.|.+|+. ++++
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANAD--NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTT--TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcc--cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 6655 58999999987532100 0000000 122233455678999999999877776 6899999965 5544
Q ss_pred EEEecCCC-CCCCceEEEEeeCCCEEEEe-c--CCeEEEEecC
Q psy1242 485 LRSLDPPS-GFASPESVVMSREGVIVVNY-E--RGHIAAFTMN 523 (540)
Q Consensus 485 ~~~l~~~~-~~~~v~~l~fspdg~~l~s~-~--dg~I~lw~~~ 523 (540)
+..+.... ....+..++|+|||++|+++ . ++.|.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 33332221 11146799999999988653 3 4789999985
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.32 E-value=4.8e-11 Score=133.84 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=139.5
Q ss_pred ecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCC-CCccccCCCCeeeccCCCCCCc--------cccccCC
Q psy1242 260 LHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPP-GNLPLTLDPILTHPTSNNNAPV--------PKRHLGD 329 (540)
Q Consensus 260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~-~~~~~s~D~~l~~~g~~~~~~~--------~~~~~~~ 329 (540)
+.+++..++++ |++|++|++.++...... +|........ ..+.+|+|+..++.++...... ....+..
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~ 101 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC
Confidence 33344457765 899999999887644332 2332221111 1267899998666543211100 0011100
Q ss_pred ----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe-cccceeeeeeEEEeeccC---------c
Q psy1242 330 ----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF-GHYGVVTSRIVQIIFGHY---------G 395 (540)
Q Consensus 330 ----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~-~~~~~v~~~~~~~l~~h~---------~ 395 (540)
.+.. ........+|||||+. ||.++ |+.|++|++.+++..+... ++...+ +.++. +
T Consensus 102 ~~~~~l~~-~~~~~~~~~~SPdG~~-la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~-------~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 102 RQLITEER-IPNNTQWVTWSPVGHK-LAYVW-NNDIYVKIEPNLPSYRITWTGKEDII-------YNGITDWVYEEEVFS 171 (740)
T ss_dssp TEECCSSC-CCTTEEEEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCSCCBTTTE-------EESBCCHHHHHHTSS
T ss_pred CcEEEccc-CCCcceeeEECCCCCE-EEEEE-CCeEEEEECCCCceEEEcCCCCccce-------ecCcccccccchhcC
Confidence 0000 0112677889999997 46664 7999999999887554221 111110 12222 2
Q ss_pred ceEEEEeccCccCCCcEEEEEeCCCc-EE-----------------------------------EEEcCC---CcccccC
Q psy1242 396 VVTCLSRSECNITADCFIASGSADCT-VL-----------------------------------LWHWNA---RTQSIVG 436 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs~Dgt-V~-----------------------------------lWd~~~---~~~~~~~ 436 (540)
....++||| ||++|+.++.|.+ ++ +||+.+ +..
T Consensus 172 ~~~~~~wSp----Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~---- 243 (740)
T 4a5s_A 172 AYSALWWSP----NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN---- 243 (740)
T ss_dssp SSBCEEECT----TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC----
T ss_pred CCcceEECC----CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc----
Confidence 234589999 9999998875433 44 444433 210
Q ss_pred CCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEeC-CCc----EE--EEe--cCCCCCCC-
Q psy1242 437 ETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQ----LGPVLVHTT-FGD----LL--RSL--DPPSGFAS- 496 (540)
Q Consensus 437 ~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~----Dg~v~iw~~-~g~----~~--~~l--~~~~~~~~- 496 (540)
. ....+. +|...+..++|+|||+.++.... +..|.+|+. +|+ +. ..+ ..+..++.
T Consensus 244 ----~-~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 244 ----A-TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp ----C-CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred ----c-eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 0 122232 37888999999999997665533 235777765 555 21 122 33454332
Q ss_pred --ceEEEEeeCCCEEE-Ee-c-C--CeEEEEecCCcEEEeee
Q psy1242 497 --PESVVMSREGVIVV-NY-E-R--GHIAAFTMNGNRLRHES 531 (540)
Q Consensus 497 --v~~l~fspdg~~l~-s~-~-d--g~I~lw~~~g~~l~~~~ 531 (540)
...++|+|||+.++ .. + + ..|.+|+++|.....+.
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 34789999999776 43 2 3 46888898866554443
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.30 E-value=1.9e-10 Score=115.89 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=139.1
Q ss_pred ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC------cC--------cceeeEE
Q psy1242 274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------FS--------QKLRVRH 339 (540)
Q Consensus 274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~------~~--------~~~~v~~ 339 (540)
++|.+||..++......+. ........+.+.+++.+.++....... ......+. +. ...-...
T Consensus 69 ~~i~~~d~~~g~~~~~~~~--~~~~~p~gia~d~~g~l~v~d~~~~~v-~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK--NLFYLPHGLSIDTDGNYWVTDVALHQV-FKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CCEEEECTTTCCEEEEECT--TTCSSEEEEEECTTSCEEEEETTTTEE-EEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred CcEEEEECCCCeEEeccCC--CccCCceEEEECCCCCEEEEECCCCEE-EEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 4789999876553322110 001122346777888777665322111 11111110 00 0111136
Q ss_pred EEEEEec-CCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-CcEEEEE
Q psy1242 340 NCFVTTV-DSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DCFIASG 416 (540)
Q Consensus 340 ~~~~~sp-dg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~~l~sg 416 (540)
..++++| +|. ++++.+ .++.|++|+ .+|+.+..+....... ....++......|+++| + +..+++.
T Consensus 146 ~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~-----~~~~~~~~~p~gia~d~----~~g~l~v~d 214 (329)
T 3fvz_A 146 TDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGS-----SPRPGQFSVPHSLALVP----HLDQLCVAD 214 (329)
T ss_dssp EEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCEEEEECEECCSS-----SCCTTEESCEEEEEEET----TTTEEEEEE
T ss_pred cEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCC-----CCCCcccCCCcEEEEEC----CCCEEEEEE
Confidence 7888999 677 677776 689999999 4577776662100000 00012334588999999 7 7888888
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEe-CCCcEEEE
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISA------ELGLVVSGSQLGPVLVHT-TFGDLLRS 487 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~sp------dg~~lasgs~Dg~v~iw~-~~g~~~~~ 487 (540)
..+++|++|+..+ ++.+..+ .++...+.+++++| +|...++.+.+..|++|+ .+|+.+..
T Consensus 215 ~~~~~I~~~~~~~-----------G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 215 RENGRIQCFKTDT-----------KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp TTTTEEEEEETTT-----------CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCC-----------CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 8899999999874 3455555 34667888999999 333333333445888887 58998888
Q ss_pred ec---CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242 488 LD---PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGN 525 (540)
Q Consensus 488 l~---~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~ 525 (540)
+. .+.. .+..|+++|+|.++++ ..+++|.+|+++|+
T Consensus 284 ~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 284 FKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 74 3333 5799999999977666 45789999998764
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.26 E-value=6.5e-10 Score=111.93 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=126.0
Q ss_pred EEEEEEecCCCEEEEEEecC------------------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC
Q psy1242 339 HNCFVTTVDSRFLLACGFWD------------------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY 394 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~D------------------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~ 394 (540)
+.+++++++|+ ++++++.+ ++|.+||..+++.+..+. .++.
T Consensus 26 v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~ 90 (329)
T 3fvz_A 26 VSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------------KNLF 90 (329)
T ss_dssp EEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------------TTTC
T ss_pred ceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------------CCcc
Confidence 67788899998 56777766 479999999898876551 2455
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---------ccCCCCEEEEEEcC-CCC
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---------TGHEQPVTSVAISA-ELG 464 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---------~~h~~~V~~v~~sp-dg~ 464 (540)
.....|+++| +|+++++...++.|++|+..... ..+..+ .++-....+|+++| ++.
T Consensus 91 ~~p~gia~d~----~g~l~v~d~~~~~v~~~~~~g~~----------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 91 YLPHGLSIDT----DGNYWVTDVALHQVFKLDPHSKE----------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp SSEEEEEECT----TSCEEEEETTTTEEEEECTTCSS----------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred CCceEEEECC----CCCEEEEECCCCEEEEEeCCCCe----------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 6789999999 99988988889999999975421 123333 34555789999999 788
Q ss_pred EEEEEe-CCCcEEEEeCCCcEEEEecCCCC--------CCCceEEEEeeC-CCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 465 LVVSGS-QLGPVLVHTTFGDLLRSLDPPSG--------FASPESVVMSRE-GVIVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 465 ~lasgs-~Dg~v~iw~~~g~~~~~l~~~~~--------~~~v~~l~fspd-g~~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
++++.+ .++.|++|+.+|+.+..+..... ...+..|+++|+ |.++++ ..+++|.+|+++ |+.+..+.
T Consensus 157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 888887 68999999999998888753221 013789999999 666666 357899999998 99888774
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.22 E-value=1e-09 Score=111.99 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=109.1
Q ss_pred EEEEecCCCEE-EEEEe-------------cCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEe-eccCcceEEEEecc
Q psy1242 341 CFVTTVDSRFL-LACGF-------------WDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQII-FGHYGVVTCLSRSE 404 (540)
Q Consensus 341 ~~~~spdg~~l-lasgs-------------~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l-~~h~~~Vt~l~~sp 404 (540)
+++++|||+++ ++++. .++++.+|++. +|+....+. .+ ..+...+.+++|+|
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~sp 154 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ------------NYEYQENTGIHGMVFDP 154 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE------------EEECCTTCCEEEEEECT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe------------eEEeCCCCcceEEEECC
Confidence 46789999963 44543 68999999997 466554441 00 12456799999999
Q ss_pred CccCCCcEEEEEeC-CCcEEEEEcC-CCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEe
Q psy1242 405 CNITADCFIASGSA-DCTVLLWHWN-ARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQ-LGPVLVHT 479 (540)
Q Consensus 405 ~~~~dg~~l~sgs~-DgtV~lWd~~-~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~ 479 (540)
||++|++++. +++|.+|++. ++. ...+..+. .|...+..++|+|+|+++++++. ++.|.+|+
T Consensus 155 ----dG~~l~~~~~~~~~v~~~~~~~~g~---------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 155 ----TETYLYSADLTANKLWTHRKLASGE---------VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp ----TSSEEEEEETTTTEEEEEEECTTSC---------EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----CCCEEEEEcCCCCEEEEEEECCCCC---------EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence 9998887764 6899999987 322 11223333 34667899999999998887775 68898874
Q ss_pred C---CCcEE---EEecC-CC---CCC-------CceEEE-EeeCCCEEEEec--CC-----eEEEEecC--CcEE
Q psy1242 480 T---FGDLL---RSLDP-PS---GFA-------SPESVV-MSREGVIVVNYE--RG-----HIAAFTMN--GNRL 527 (540)
Q Consensus 480 ~---~g~~~---~~l~~-~~---~~~-------~v~~l~-fspdg~~l~s~~--dg-----~I~lw~~~--g~~l 527 (540)
. +|++. ..+.. +. +.. .+..++ |+|||++|+++. ++ .|.+|+++ |++.
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 3 56653 22221 11 100 267899 999999887642 23 89999984 5544
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.21 E-value=1.3e-09 Score=107.64 Aligned_cols=171 Identities=10% Similarity=0.032 Sum_probs=118.2
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
..+++++++|+ ++++...++.|.+||..+++......... ......+..++++| +|++++|.+.
T Consensus 71 ~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~~~~~i~~d~----~G~l~vtd~~ 134 (296)
T 3e5z_A 71 QNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE-----------GKKLNSPNDVCLAP----DGSLWFSDPT 134 (296)
T ss_dssp EEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET-----------TEECCCCCCEEECT----TSCEEEEECS
T ss_pred cceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC-----------CCCCCCCCCEEECC----CCCEEEECCc
Confidence 46788899999 56777667899999998887654331000 01123567899999 9998887432
Q ss_pred CC---------------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--C
Q psy1242 419 DC---------------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--F 481 (540)
Q Consensus 419 Dg---------------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~ 481 (540)
+| .-.||.++.. ..+..+..+.....+++|+|+++.+++.+.++.|.+|+. +
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~ 203 (296)
T 3e5z_A 135 YGIDKPEEGYGGEMELPGRWVFRLAPD-----------GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR 203 (296)
T ss_dssp HHHHCGGGSSCCCCCSSSCEEEEECTT-----------SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS
T ss_pred cccccccccccccccCCCcEEEEECCC-----------CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC
Confidence 11 2255555431 123445566677899999999998877888899988864 5
Q ss_pred CcE---EEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeeecCCcceec
Q psy1242 482 GDL---LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKT 539 (540)
Q Consensus 482 g~~---~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~~~~~V~~v 539 (540)
|++ ...+..+.. .+.+++++++|++.++. ++.|.+|+++|+.+..+.....+.++
T Consensus 204 g~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~~~ 261 (296)
T 3e5z_A 204 GETEYQGVHFTVEPG--KTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQTTSNL 261 (296)
T ss_dssp SCEEEEEEEECCSSS--CCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSCCCEE
T ss_pred CcCcCCCeEeeCCCC--CCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCCceeE
Confidence 655 344422333 56889999999987777 88999999999998887633225554
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.18 E-value=6.5e-11 Score=131.93 Aligned_cols=233 Identities=7% Similarity=-0.026 Sum_probs=135.4
Q ss_pred eeeecCCcEEEEEccC---------cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242 257 YVTLHMPSVVTVTANH---------QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL 327 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~---------D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~ 327 (540)
.+.+++++..+++++. ++++++||..++........ ......+.||+||..++.+.+. ....+.+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~~~--~i~~~~~ 137 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVYQN--NIYLKQR 137 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEETT--EEEEESS
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEECC--eEEEEeC
Confidence 3445555555666654 78999999987654111111 1223467899999777655321 1111111
Q ss_pred CCCc------Cccee-e---------------EEEEEEEecCCCEEEEEEecCC--------------------------
Q psy1242 328 GDNF------SQKLR-V---------------RHNCFVTTVDSRFLLACGFWDN-------------------------- 359 (540)
Q Consensus 328 ~~~~------~~~~~-v---------------~~~~~~~spdg~~llasgs~Dg-------------------------- 359 (540)
.... ..... + ...+++|||||++ ||.++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 1100 00000 0 1147889999997 56665442
Q ss_pred --------cEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEE
Q psy1242 360 --------SFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLW 425 (540)
Q Consensus 360 --------sv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lW 425 (540)
+|++||+.+++.. ..+.. -..+.+|...+.+++|+| |++.+++.... ..|.+|
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sp----D~~~~~~~~~~~~~~~~l~~~ 283 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPV---------PAMIASSDYYFSWLTWVT----DERVCLQWLKRVQNVSVLSIC 283 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCC---------CHHHHTSCEEEEEEEESS----SSEEEEEEEESSTTEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccC---------CccCCCCcceEEEeEEeC----CCeEEEEEeccccCeEEEEEE
Confidence 6778888876542 11100 001146888899999999 98877775432 247778
Q ss_pred E----cCCCcccccCCCCCCcceEEe----ccCCCCEE-----EEEEcCCCCEEE--EEeCCCcEEE--EeCCCcEEEEe
Q psy1242 426 H----WNARTQSIVGETDTPTPRATL----TGHEQPVT-----SVAISAELGLVV--SGSQLGPVLV--HTTFGDLLRSL 488 (540)
Q Consensus 426 d----~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~-----~v~~spdg~~la--sgs~Dg~v~i--w~~~g~~~~~l 488 (540)
| ..++. +...+ .+|...+. +++|+|||+.++ ++..+|...| |+..+.....+
T Consensus 284 d~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~l 352 (719)
T 1z68_A 284 DFREDWQTWD-----------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQI 352 (719)
T ss_dssp EECSSSSSEE-----------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred cccCCCCCCc-----------eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEec
Confidence 8 54422 22222 36776666 789999999554 4556776555 55544335566
Q ss_pred cCCCCCCCceEEEEeeCCCEEEE-ecC-----CeEEEEecC
Q psy1242 489 DPPSGFASPESVVMSREGVIVVN-YER-----GHIAAFTMN 523 (540)
Q Consensus 489 ~~~~~~~~v~~l~fspdg~~l~s-~~d-----g~I~lw~~~ 523 (540)
..+.. .+..+.++ +|+.|+. +.+ +..++|.++
T Consensus 353 t~~~~--~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 353 TSGKW--EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SCSSS--CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccCce--EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 65444 56777777 8776665 443 678888754
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.16 E-value=4.7e-09 Score=102.71 Aligned_cols=161 Identities=12% Similarity=0.142 Sum_probs=122.7
Q ss_pred EEEEEEe-cCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 339 HNCFVTT-VDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 339 ~~~~~~s-pdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
...+++. ++++ +++++.. ++.|++|| .+++.+..+. ..+...+.+++++| +|+.+++.
T Consensus 79 p~~i~~~~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~~~~--------------~~~~~~~~~i~~~~----~g~l~v~~ 138 (286)
T 1q7f_A 79 PNRVAVVRNSGD-IIVTERSPTHQIQIYN-QYGQFVRKFG--------------ATILQHPRGVTVDN----KGRIIVVE 138 (286)
T ss_dssp EEEEEEETTTTE-EEEEECGGGCEEEEEC-TTSCEEEEEC--------------TTTCSCEEEEEECT----TSCEEEEE
T ss_pred ceEEEEEcCCCe-EEEEcCCCCCEEEEEC-CCCcEEEEec--------------CccCCCceEEEEeC----CCCEEEEE
Confidence 5677774 6666 5666643 89999999 5577766651 23446789999999 89888888
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGF 494 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~ 494 (540)
..++.|.+|+... +.+..+. ++...+.+++++++|.++++.+.++.|.+|+.+++.+..+......
T Consensus 139 ~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~ 206 (286)
T 1q7f_A 139 CKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT 206 (286)
T ss_dssp TTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTS
T ss_pred CCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCcc
Confidence 8889999998543 2333442 4556789999999999888888899999999989888888654321
Q ss_pred CCceEEEEeeCCCEEEEec-CC-eEEEEecCCcEEEeee
Q psy1242 495 ASPESVVMSREGVIVVNYE-RG-HIAAFTMNGNRLRHES 531 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~~-dg-~I~lw~~~g~~l~~~~ 531 (540)
..+..++++++|+++++.. ++ .|.+|+.+|+.+..+.
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 2578999999999888754 44 9999999999887775
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.12 E-value=8e-10 Score=123.91 Aligned_cols=142 Identities=12% Similarity=-0.020 Sum_probs=101.1
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D 419 (540)
..++|+|||++ ++++ |++|++||+.+++....+.+|.. ..+......++||| ||++|+.++.+
T Consensus 20 ~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sp----dg~~l~~~~~~ 82 (740)
T 4a5s_A 20 YSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVFLENSTF----------DEFGHSINDYSISP----DGQFILLEYNY 82 (740)
T ss_dssp CCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEEECTTTT----------TTCCSCCCEEEECT----TSSEEEEEEEE
T ss_pred cccEECCCCcE-EEEc--CCcEEEEECCCCceEEEEechhh----------hhhcccccceEECC----CCCEEEEEECC
Confidence 45788999984 6776 99999999999998777733221 01111234588999 99999999876
Q ss_pred ---------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242 420 ---------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD 489 (540)
Q Consensus 420 ---------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~ 489 (540)
+.+.+||+.++. ...+..|...+..++|||||+.||.++ |+.|++|+. +|+.. .+.
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt 148 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQ------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RIT 148 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTE------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECC
T ss_pred eeeEEEccceEEEEEECCCCc------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEc
Confidence 556699987632 234667788899999999999999885 689999976 44433 332
Q ss_pred --CCCCC---------------CCceEEEEeeCCCEEEEe
Q psy1242 490 --PPSGF---------------ASPESVVMSREGVIVVNY 512 (540)
Q Consensus 490 --~~~~~---------------~~v~~l~fspdg~~l~s~ 512 (540)
++... ....+++|||||+.|+..
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 22110 012358999999999874
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=7.5e-09 Score=101.77 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=137.8
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 342 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 342 (540)
|..++++++.+..|.+||..+++.. +++..... ....++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------------------------------w~~~~~~~----~~~~~~ 42 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-------------------------------------WEYPLEKG----WECNSV 42 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-------------------------------------EEEECCTT----CCCCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-------------------------------------EEeCCCcc----CCCcCe
Confidence 5677999999999999998553311 11111000 013456
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEeccCccCCCcEEEEEeC-CC
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSRSECNITADCFIASGSA-DC 420 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~sp~~~~dg~~l~sgs~-Dg 420 (540)
+++|+|+ +++ +.++.|..||. +|+.+..+ ..+ ...+.++.+.+ +|+.+++.+. ++
T Consensus 43 ~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~---------------~~~~~~~~~~~~~~~----dG~~lv~~~~~~~ 99 (276)
T 3no2_A 43 AATKAGE-ILF--SYSKGAKMITR-DGRELWNI---------------AAPAGCEMQTARILP----DGNALVAWCGHPS 99 (276)
T ss_dssp EECTTSC-EEE--ECBSEEEEECT-TSCEEEEE---------------ECCTTCEEEEEEECT----TSCEEEEEESTTE
T ss_pred EECCCCC-EEE--eCCCCEEEECC-CCCEEEEE---------------cCCCCccccccEECC----CCCEEEEecCCCC
Confidence 7799999 456 34788999999 79988888 333 34678889999 9999999887 77
Q ss_pred cEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCC
Q psy1242 421 TVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGF 494 (540)
Q Consensus 421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~ 494 (540)
.|..++... +.+..+. ++......+++.++|.++++.+.++.|..++..|+.+.++..+.
T Consensus 100 ~v~~vd~~G------------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~-- 165 (276)
T 3no2_A 100 TILEVNMKG------------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG-- 165 (276)
T ss_dssp EEEEECTTS------------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSS--
T ss_pred EEEEEeCCC------------CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCC--
Confidence 777666432 2222221 22223445678999999999999999999998899999988753
Q ss_pred CCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeee
Q psy1242 495 ASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~ 531 (540)
.+.++.+.++|++++++. +++|..+|++ |+.+-++.
T Consensus 166 -~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 166 -TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred -CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 457788899999988854 5689999998 99988775
No 173
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.10 E-value=9.7e-09 Score=99.26 Aligned_cols=224 Identities=9% Similarity=0.009 Sum_probs=137.5
Q ss_pred cEEEE-EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----cCcceeeE
Q psy1242 264 SVVTV-TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----FSQKLRVR 338 (540)
Q Consensus 264 ~~~lv-s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----~~~~~~v~ 338 (540)
+.+.+ +.+.++.|.+|+..+....... .. .......+.+.+|+.+.++.. ..........+. +.......
T Consensus 35 g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~--~~~~p~~i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 109 (270)
T 1rwi_B 35 GNVYVTSEGMYGRVVKLATGSTGTTVLP-FN--GLYQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNY 109 (270)
T ss_dssp CCEEEEECSSSCEEEEECC-----EECC-CC--SCCSCCCEEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCSS
T ss_pred CCEEEEccCCCCcEEEecCCCcccceEe-eC--CcCCcceeEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCcCC
Confidence 33466 6577889999997653322111 10 012233466777887666542 111111111110 00000012
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++++++|+ ++++...++.|.+|+..+....... ......+.++++++ +|+.+++...
T Consensus 110 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~~~~----~g~l~v~~~~ 169 (270)
T 1rwi_B 110 PEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVAVDN----SGNVYVTDTD 169 (270)
T ss_dssp EEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECC---------------CCSCCSCCCEEECT----TCCEEEEEGG
T ss_pred CcceEECCCCC-EEEEECCCCEEEEEECCCceeEeec---------------cccCCCceeEEEeC----CCCEEEEECC
Confidence 56788899998 6777777889999976544332211 23334678899999 8987777777
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCce
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPE 498 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~ 498 (540)
++.|.+|+..... .......+...+.+++++++|.++++...++.|.+++..+........... ..+.
T Consensus 170 ~~~i~~~~~~~~~-----------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~p~ 237 (270)
T 1rwi_B 170 NNRVVKLEAESNN-----------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-NTPL 237 (270)
T ss_dssp GTEEEEECTTTCC-----------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-SCEE
T ss_pred CCEEEEEecCCCc-----------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-CCce
Confidence 8899999976522 111122333678899999999888888888899999876655444332221 1578
Q ss_pred EEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242 499 SVVMSREGVIVVN-YERGHIAAFTMNG 524 (540)
Q Consensus 499 ~l~fspdg~~l~s-~~dg~I~lw~~~g 524 (540)
+++++++|+++++ ..+++|.++++..
T Consensus 238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred eEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 9999999997766 4579999999773
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.08 E-value=3.9e-09 Score=103.83 Aligned_cols=150 Identities=14% Similarity=0.087 Sum_probs=118.0
Q ss_pred EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCC
Q psy1242 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCFIASGSADCTVLLWHWNA 429 (540)
Q Consensus 351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~ 429 (540)
+|++++.|+.|.+||.++|+.+..+ ..+. ..+.+++++| +|+.++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~---------------~~~~~~~~~~~~~~p----dG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEY---------------PLEKGWECNSVAATK----AGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEE---------------ECCTTCCCCEEEECT----TSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEe---------------CCCccCCCcCeEECC----CCCEEE--eCCCCEEEECC-C
Confidence 6899999999999999999999888 4444 4688999999 999888 45788999986 3
Q ss_pred CcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcEEEEecCCCC----CCCceEEEEe
Q psy1242 430 RTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQ-LGPVLVHTTFGDLLRSLDPPSG----FASPESVVMS 503 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~~g~~~~~l~~~~~----~~~v~~l~fs 503 (540)
++.+-.+..+ ...+.++.+.++|+++++.+. ++.+..++.+|+.+..+..... ...+..+++.
T Consensus 65 -----------G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 65 -----------GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp -----------SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred -----------CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence 3455556554 346889999999999999887 7777777889998887753221 0134567889
Q ss_pred eCCCEEEEe-cCCeEEEEecCCcEEEeeecC
Q psy1242 504 REGVIVVNY-ERGHIAAFTMNGNRLRHESHN 533 (540)
Q Consensus 504 pdg~~l~s~-~dg~I~lw~~~g~~l~~~~~~ 533 (540)
++|.++++. .++.|.+||.+|+.+-.+...
T Consensus 134 ~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~ 164 (276)
T 3no2_A 134 KKGNYLVPLFATSEVREIAPNGQLLNSVKLS 164 (276)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEEECS
T ss_pred CCCCEEEEecCCCEEEEECCCCCEEEEEECC
Confidence 999999885 579999999999998887643
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.07 E-value=3.7e-09 Score=106.27 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=129.1
Q ss_pred CcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCC--CC--ccccccCCCcCc---ceeeEEEEEEE
Q psy1242 272 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--AP--VPKRHLGDNFSQ---KLRVRHNCFVT 344 (540)
Q Consensus 272 ~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~--~~--~~~~~~~~~~~~---~~~v~~~~~~~ 344 (540)
.+..+.+|+..++..... .....+.||+||..++..+... .. .....+.+.... .... +..++|
T Consensus 41 ~~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~w 111 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEW 111 (347)
T ss_dssp EEEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEE
T ss_pred ccceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeE
Confidence 366788888876543222 1123467999997665432211 11 111111110000 0011 577889
Q ss_pred ecCCCEEEEEEec--------------------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242 345 TVDSRFLLACGFW--------------------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398 (540)
Q Consensus 345 spdg~~llasgs~--------------------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt 398 (540)
+|||+.|++++.. ...|.+||+.+++.+..+ .. . .+.
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l---------------~~-~-~~~ 174 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF---------------EK-P-RFS 174 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE---------------EE-E-TTC
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee---------------cC-C-Ccc
Confidence 9999975444422 256889999888774555 33 3 788
Q ss_pred EEEeccCccCCCcEEEEEeCCC-------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 399 CLSRSECNITADCFIASGSADC-------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~sgs~Dg-------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 471 (540)
.++|+| +| .+++++.+. ...||.+++ ++ ...+..+ ..+..+ +|+|+.|+.++.
T Consensus 175 ~~~~sp----dg-~~~~~~~~~~~~~~~~~~~l~~~d~-----------~~-~~~l~~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 175 SGIWHR----DK-IVVNVPHREIIPQYFKFWDIYIWED-----------GK-EEKMFEK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEEEET----TE-EEEEEECCCSSCCSSCCEEEEEEET-----------TE-EEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred cccCCC----Ce-EEEEEecccccccccccccEEEeCC-----------Cc-eEEeccC-cceeeE--CCCCCEEEEEEc
Confidence 999999 89 777776652 556666552 12 2333344 555554 999998888775
Q ss_pred CC--------cEEEEeCCCcEEEEecCCCCCCCceE-EEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242 472 LG--------PVLVHTTFGDLLRSLDPPSGFASPES-VVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKT 539 (540)
Q Consensus 472 Dg--------~v~iw~~~g~~~~~l~~~~~~~~v~~-l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~v 539 (540)
++ .|.+|+ +++.......+.. .+.. ++|+ +| ++++ ..++.+.+| ++ |+......+++.|.++
T Consensus 235 ~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~--~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~ 307 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD-GKEVMGILDEVDR--GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGF 307 (347)
T ss_dssp CSSSCCCSSCEEEEEC-SSCEEESSTTCCS--EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEE
T ss_pred cccCCccccceEEEEC-CCceEeccccCCc--ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEee
Confidence 43 566677 6665544444444 5675 8999 88 6666 457888888 76 6654444455555543
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.07 E-value=9.8e-09 Score=104.72 Aligned_cols=152 Identities=8% Similarity=-0.103 Sum_probs=106.1
Q ss_pred EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE--eccCccCCCcEEEEE---
Q psy1242 342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS--RSECNITADCFIASG--- 416 (540)
Q Consensus 342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~--~sp~~~~dg~~l~sg--- 416 (540)
.+|+|||+. |+.++.++.|++||+.+++..... ..+...+.... ++| +++.++..
T Consensus 86 ~~~spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~---------------~~~~~~~~~~~~~~~~----dg~~l~~~~~~ 145 (388)
T 3pe7_A 86 GFLSPDDDA-LFYVKDGRNLMRVDLATLEENVVY---------------QVPAEWVGYGTWVANS----DCTKLVGIEIR 145 (388)
T ss_dssp CEECTTSSE-EEEEETTTEEEEEETTTCCEEEEE---------------ECCTTEEEEEEEEECT----TSSEEEEEEEE
T ss_pred eEEcCCCCE-EEEEeCCCeEEEEECCCCcceeee---------------echhhcccccceeECC----CCCeecccccc
Confidence 358999997 577778899999999998876665 44445454443 478 88888743
Q ss_pred -------------------eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCC---
Q psy1242 417 -------------------SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLG--- 473 (540)
Q Consensus 417 -------------------s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg--- 473 (540)
+.+..|.+||+.++ ....+..+...+..++|+| +|+.|+.++.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDL 213 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTT
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCC------------ceEEeecCCccccccEECCCCCCEEEEEEecCCCC
Confidence 24467888887752 2344556777899999999 999988877643
Q ss_pred ---cEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ec--C---CeEEEEecCCc
Q psy1242 474 ---PVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YE--R---GHIAAFTMNGN 525 (540)
Q Consensus 474 ---~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~--d---g~I~lw~~~g~ 525 (540)
.|.+++..+...+.+..+.....+..++|+|||+.|+. +. + ..|.+|++.+.
T Consensus 214 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 214 VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 56666666665566655442113678899999997765 22 1 23999999843
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.06 E-value=3.9e-09 Score=116.27 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=103.1
Q ss_pred EEEEEEecCCCEEEEEEecC--------CcEEEEEcc-CC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 339 HNCFVTTVDSRFLLACGFWD--------NSFRVFSTD-NA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~D--------gsv~iwd~~-~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
+..++|||||++| +.++++ ..|++||+. +| +..... .+|...+..++|+|
T Consensus 190 ~~~~~~SpDG~~l-a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~---------------~~~~~~~~~~~~sp-- 251 (662)
T 3azo_A 190 VTGPRLSPDGRQA-VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL---------------GGPEEAIAQAEWAP-- 251 (662)
T ss_dssp ECCCEECTTSSEE-EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE---------------EETTBCEEEEEECT--
T ss_pred ccCceECCCCCEE-EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC---------------CCCCceEcceEECC--
Confidence 4567899999974 555544 379999998 56 333333 45678899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242 407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP--------VTSVAISAELGLVVSGSQLGPVLVH 478 (540)
Q Consensus 407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--------V~~v~~spdg~~lasgs~Dg~v~iw 478 (540)
||+++++++.++..+||.++... ++......++... +.+++|+++++++++++. +.++||
T Consensus 252 --dg~l~~~~~~~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 252 --DGSLIVATDRTGWWNLHRVDPAT---------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp --TSCEEEEECTTSSCEEEEECTTT---------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred --CCeEEEEECCCCCeEEEEEECCC---------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 99988888888855555554311 1222222222221 467899999999999998 999998
Q ss_pred --eCCCcEEEEecCCCCCCCceEEEEeeCCCEEE--Eec-CC--eEEEEecCCcEEEee
Q psy1242 479 --TTFGDLLRSLDPPSGFASPESVVMSREGVIVV--NYE-RG--HIAAFTMNGNRLRHE 530 (540)
Q Consensus 479 --~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~--s~~-dg--~I~lw~~~g~~l~~~ 530 (540)
+..+..++.+..+.. .+..+ +++++..++ +++ +. .|.++++++..+..+
T Consensus 320 ~~d~~~~~~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 320 ILDPESGELVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEETTTTEEEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEECCCCcEEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 555555788877765 45555 155665443 333 32 466667764444333
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.03 E-value=3.1e-08 Score=110.17 Aligned_cols=233 Identities=11% Similarity=-0.016 Sum_probs=139.2
Q ss_pred ceeeecCCcEEEE-----EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC---------
Q psy1242 256 TYVTLHMPSVVTV-----TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--------- 321 (540)
Q Consensus 256 ~~~~~~~~~~~lv-----s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~--------- 321 (540)
..+.+++++..++ +++.+.+|++||..++.... ..+...+. ...+.|++|+..++.++.....
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~ 200 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPG 200 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence 3345555555555 56667899999998866431 11111111 1457899999766654332210
Q ss_pred ---ccccccCCCcCcce--------eeEEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeee
Q psy1242 322 ---VPKRHLGDNFSQKL--------RVRHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRI 386 (540)
Q Consensus 322 ---~~~~~~~~~~~~~~--------~v~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~ 386 (540)
...+.+........ ......+++||||++|+++. .++ .|.+++..+++.. .+
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~~~l~~~~~~~~~~~-~l----------- 267 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI-LRGWSENDVYWKRPGEKDFR-LL----------- 267 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE-EETTTEEEEEEECTTCSSCE-EE-----------
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE-eCCCCceEEEEEcCCCCceE-Ee-----------
Confidence 12222322211100 12356788999999865444 444 5666666555433 33
Q ss_pred EEEeeccCcceEEEEeccCccCCCcEEEEEe---CCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcC
Q psy1242 387 VQIIFGHYGVVTCLSRSECNITADCFIASGS---ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISA 461 (540)
Q Consensus 387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs---~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~sp 461 (540)
..+.+.+....+ + +|.+++++. .++.|.+||+.+... .....+..| ...+..++++
T Consensus 268 ----~~~~~~~~~~~~-~----~g~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 268 ----VKGVGAKYEVHA-W----KDRFYVLTDEGAPRQRVFEVDPAKPAR---------ASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp ----EECSSCCEEEEE-E----TTEEEEEECTTCTTCEEEEEBTTBCSG---------GGCEEEECCCSSCEEEEEEEE-
T ss_pred ----ecCCCceEEEEe-c----CCcEEEEECCCCCCCEEEEEeCCCCCc---------cCCeEEecCCCCCeEEEEEEE-
Confidence 345555666666 5 566444444 257899999765221 012333333 4467888888
Q ss_pred CCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-e-c---CCeEEEEecCC
Q psy1242 462 ELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-Y-E---RGHIAAFTMNG 524 (540)
Q Consensus 462 dg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~-~---dg~I~lw~~~g 524 (540)
++.++++...|+..+|| +.+|+.++.+..+... .+..++++|++..++. . + .++|++||+.+
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG-AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS-EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 67788999999999887 4467777777765221 4677889999987764 2 2 37899999874
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.03 E-value=1.8e-08 Score=99.30 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=109.3
Q ss_pred EEEEEecCCCEEEEE----Eec-------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242 340 NCFVTTVDSRFLLAC----GFW-------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402 (540)
Q Consensus 340 ~~~~~spdg~~llas----gs~-------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~ 402 (540)
..++++|+|+ ++++ |.. .+.|..++.. ++. ..+ ..+......++|
T Consensus 118 ~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~---------------~~~~~~~~gi~~ 179 (296)
T 3e5z_A 118 NDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAP---------------IRDRVKPNGLAF 179 (296)
T ss_dssp CCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEE---------------ECCCSSEEEEEE
T ss_pred CCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEe---------------ecCCCCCccEEE
Confidence 4567799998 4565 321 2345555544 443 333 356667889999
Q ss_pred ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcc---eEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242 403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTP---RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT 479 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~ 479 (540)
+| +|+.+++.+.++.|.+|++.. . ++. ...+..+...+.+++++++|.++++. ++.|.+|+
T Consensus 180 s~----dg~~lv~~~~~~~i~~~~~~~-~---------g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 180 LP----SGNLLVSDTGDNATHRYCLNA-R---------GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp CT----TSCEEEEETTTTEEEEEEECS-S---------SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred CC----CCCEEEEeCCCCeEEEEEECC-C---------CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 99 999888888889999999862 1 111 22333355567789999999977766 78899999
Q ss_pred CCCcEEEEecCCCCCCCceEEEE-eeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242 480 TFGDLLRSLDPPSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 480 ~~g~~~~~l~~~~~~~~v~~l~f-spdg~~l~s~~dg~I~lw~~~g~~l~~~ 530 (540)
.+|+.+..+..+.. +.+++| +|+++.|+.++.+.+.-++++.+.|...
T Consensus 244 ~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 244 PDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEHH 292 (296)
T ss_dssp TTSCEEEEEECSSC---CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC-
T ss_pred CCCCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCeEEEEEccccccccc
Confidence 88999888877664 689999 5899988887777777778776666544
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.00 E-value=4.2e-09 Score=107.52 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=107.2
Q ss_pred EEEecCCCEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242 342 FVTTVDSRFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419 (540)
Q Consensus 342 ~~~spdg~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D 419 (540)
.+|+|||++|++++..++. |.+||+.+++..+.. .++...+.+++|+| ||+.|+.++.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt---------------~~~~~~~~~~~~sp----dg~~l~~~~~~ 101 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT---------------EGRGDNTFGGFLSP----DDDALFYVKDG 101 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC---------------CSSCBCSSSCEECT----TSSEEEEEETT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee---------------eCCCCCccceEEcC----CCCEEEEEeCC
Confidence 4679999985444443674 888899888876655 55666666778999 99999999999
Q ss_pred CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE--EcCCCCEEEEEe----------------------CCCcE
Q psy1242 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA--ISAELGLVVSGS----------------------QLGPV 475 (540)
Q Consensus 420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~--~spdg~~lasgs----------------------~Dg~v 475 (540)
+.|.+||+.+. +....+..+...+.... ++++++.++... .+..|
T Consensus 102 ~~l~~~d~~~g-----------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 102 RNLMRVDLATL-----------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TEEEEEETTTC-----------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CeEEEEECCCC-----------cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 99999998763 33344444555454333 489999887432 33567
Q ss_pred EEEeC-CCcEEEEecCCCCCCCceEEEEee-CCCEEEEec-------CCeEEEEecCCcEEEee
Q psy1242 476 LVHTT-FGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-------RGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fsp-dg~~l~s~~-------dg~I~lw~~~g~~l~~~ 530 (540)
.+|+. +|+. ..+..+.. .+..++|+| +|+.|+... ...|.+++++|..+..+
T Consensus 171 ~~~d~~~g~~-~~l~~~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 171 MRVDLKTGES-TVILQENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp EEEETTTCCE-EEEEEESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred EEEECCCCce-EEeecCCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 77776 5554 34433444 578999999 999887632 23688888876544433
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=8.2e-08 Score=106.96 Aligned_cols=233 Identities=11% Similarity=-0.020 Sum_probs=144.2
Q ss_pred eeeecCCcEEEEEccC-----cceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCC----------
Q psy1242 257 YVTLHMPSVVTVTANH-----QFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNA---------- 320 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~-----D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~---------- 320 (540)
.+.+++++..++.++. ..+|++||+.++..... .... ....+.|++|+..++.++....
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-----ccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 3455555544554332 23899999987664321 1111 1235789999976554432221
Q ss_pred -----CccccccCCCcCcce--------eeEEEEEEEecCCCEEEEEEec----CCcEEEEEccC------Ce-EEEEEe
Q psy1242 321 -----PVPKRHLGDNFSQKL--------RVRHNCFVTTVDSRFLLACGFW----DNSFRVFSTDN------AR-IVQIIF 376 (540)
Q Consensus 321 -----~~~~~~~~~~~~~~~--------~v~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~------g~-~~~~l~ 376 (540)
....+.++....... ......+.|||||++|+++... +..|.+||+.+ +. ....+
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l- 282 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL- 282 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe-
Confidence 022223322211101 1124577899999986555431 56899999986 53 34444
Q ss_pred cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCC
Q psy1242 377 GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ 452 (540)
Q Consensus 377 ~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~ 452 (540)
..+.+.+.. .|+| +|+.|+..+.+ +.|.+||+..... .....+..|..
T Consensus 283 --------------~~~~~~~~~-~~s~----dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~ 334 (710)
T 2xdw_A 283 --------------IDNFEGEYD-YVTN----EGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWKVLVPEHE 334 (710)
T ss_dssp --------------ECSSSSCEE-EEEE----ETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCEEEECCCS
T ss_pred --------------eCCCCcEEE-EEec----cCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccceeccCCCC
Confidence 455555555 4788 78877666543 3688898765210 12345555544
Q ss_pred --CEEEEEEcCCCCEEEEEeCCCcEEE--EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--c---CCeEEEEec
Q psy1242 453 --PVTSVAISAELGLVVSGSQLGPVLV--HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--E---RGHIAAFTM 522 (540)
Q Consensus 453 --~V~~v~~spdg~~lasgs~Dg~v~i--w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~---dg~I~lw~~ 522 (540)
.+..++|++++.++++...|+..+| |+. +|+.++.+..+.+ .+..++++|++..++.. + .++|.+||+
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc--eEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 6888999988888899999997655 565 7888888887755 67889999999866642 2 478999998
Q ss_pred C-Cc
Q psy1242 523 N-GN 525 (540)
Q Consensus 523 ~-g~ 525 (540)
. |+
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 7 44
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.97 E-value=1.1e-08 Score=102.87 Aligned_cols=226 Identities=8% Similarity=-0.023 Sum_probs=137.3
Q ss_pred cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC-----CcCcce---
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-----NFSQKL--- 335 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~~~~~~--- 335 (540)
..+.++.+.+++|.+||..+.+....... ......+.+++|+.+.++....... ....... ......
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v-~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRI-FIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEE-EEEETTTTEEEEEEECTTCCT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeE-EEEECCCCeEEEEEEcCCccc
Confidence 33455666788999999987665433211 1222346676777665544111111 1110000 000000
Q ss_pred -eeEEEEEEEecCCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 336 -RVRHNCFVTTVDSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 336 -~v~~~~~~~spdg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
......+++ ++..++++.. .+++|.++|..+++.+..+ .. ......++++| +|+++
T Consensus 129 ~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i---------------~~-g~~p~~i~~~~----dG~l~ 186 (328)
T 3dsm_A 129 ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL---------------TI-GIQPTSLVMDK----YNKMW 186 (328)
T ss_dssp TTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE---------------EC-SSCBCCCEECT----TSEEE
T ss_pred cCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE---------------Ec-CCCccceEEcC----CCCEE
Confidence 001223444 4555666665 4899999999999988777 22 23456788999 89877
Q ss_pred EEEeCC----------CcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242 414 ASGSAD----------CTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQLGPVLVHTT-F 481 (540)
Q Consensus 414 ~sgs~D----------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~ 481 (540)
+++..+ +.|.++|..+ .+....+.-. ......++++|+++.+..+.. .|.+++. +
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t-----------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAET-----------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTT-----------TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred EEECCCccCCccccCCceEEEEECCC-----------CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 776655 7899999765 2333344321 236789999999998887765 7777765 5
Q ss_pred CcEEE-E-ecCCCCCCCceEEEEee-CCCEEEEe-----cCCeEEEEecCCcEEEeee
Q psy1242 482 GDLLR-S-LDPPSGFASPESVVMSR-EGVIVVNY-----ERGHIAAFTMNGNRLRHES 531 (540)
Q Consensus 482 g~~~~-~-l~~~~~~~~v~~l~fsp-dg~~l~s~-----~dg~I~lw~~~g~~l~~~~ 531 (540)
++... . +..... .+..++++| ++.+.++. .++.|.+|+++|+.+.++.
T Consensus 254 ~~~~~~~~~~~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 254 DRVPVRPFLEFRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SSCCSSCSBCCCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CceeeeeeecCCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 55431 1 111122 578999999 55555554 3689999999999988875
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.95 E-value=1.2e-07 Score=94.63 Aligned_cols=225 Identities=13% Similarity=0.051 Sum_probs=131.7
Q ss_pred eecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCC---CCccccccCCC-c--
Q psy1242 259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNN---APVPKRHLGDN-F-- 331 (540)
Q Consensus 259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~---~~~~~~~~~~~-~-- 331 (540)
.+.+++.+.+++..++.|.+|++.++...... .+. .....+.+++|+.+.+++.... ........... .
T Consensus 51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 33445556777788899999998765533221 111 1223466788887766543220 11111111100 0
Q ss_pred --C-cceeeEEEEEEEecCCCEEEEEEec------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242 332 --S-QKLRVRHNCFVTTVDSRFLLACGFW------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402 (540)
Q Consensus 332 --~-~~~~v~~~~~~~spdg~~llasgs~------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~ 402 (540)
. ......+.+++++|+|+. +++... .+.|..++..+++... + ..+...+.+++|
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~---------------~~~~~~~~~i~~ 189 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTVTP-I---------------IQNISVANGIAL 189 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCEEE-E---------------EEEESSEEEEEE
T ss_pred EEccCccCCcccceEECCCCCE-EEEeccccccCCCceEEEEeCCCCEEEE-e---------------ecCCCcccceEE
Confidence 0 011123678888999984 555543 2456666655444432 2 223345789999
Q ss_pred ccCccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy1242 403 SECNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF 481 (540)
Q Consensus 403 sp~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~ 481 (540)
+| +|+.| ++.+.++.|.+|+......... . ........+.++ ..+.+++++++|.++++...++.|.+|+.+
T Consensus 190 ~~----dg~~l~v~~~~~~~i~~~d~~~~g~~~~-~-~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 190 ST----DEKVLWVTETTANRLHRIALEDDGVTIQ-P-FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CT----TSSEEEEEEGGGTEEEEEEECTTSSSEE-E-EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CC----CCCEEEEEeCCCCeEEEEEecCCCcCcc-c-ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 99 88855 4555688999999853110000 0 000001112233 467889999999988888888999999888
Q ss_pred CcEEEEecCCCCC----CCceEEEEeeCCCEEEE
Q psy1242 482 GDLLRSLDPPSGF----ASPESVVMSREGVIVVN 511 (540)
Q Consensus 482 g~~~~~l~~~~~~----~~v~~l~fspdg~~l~s 511 (540)
++.+..+..+... ..+.+++|+|+|+.|+.
T Consensus 263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 8888777654320 03689999999876654
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.95 E-value=5.1e-08 Score=97.42 Aligned_cols=156 Identities=7% Similarity=0.087 Sum_probs=108.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
..+++|+++|+ |++++..++.|.+||..+++..... ..+...+.+++++| +|++++++..
T Consensus 47 ~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~---------------~~~~~~~~~i~~~~----dg~l~v~~~~ 106 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPF---------------VSHKANPAAIKIHK----DGRLFVCYLG 106 (333)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE---------------ECSSSSEEEEEECT----TSCEEEEECT
T ss_pred ccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEe---------------eCCCCCcceEEECC----CCcEEEEeCC
Confidence 35678899998 6788888999999999888765444 34567899999999 8988887776
Q ss_pred C----CcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcEEE
Q psy1242 419 D----CTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQ------LGPVLVHTTFGDLLR 486 (540)
Q Consensus 419 D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~------Dg~v~iw~~~g~~~~ 486 (540)
+ +.|.+||..+.. ....+. .+...+.+++++|+|+++++... .+.|..++..+..+.
T Consensus 107 ~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDN-----------LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp TSSSCCEEEEECTTSCS-----------CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred CCCCCceEEEEeCCCCE-----------EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 6 689999876522 111222 24467899999999998877654 244544555432222
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEec--CCcEE
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTM--NGNRL 527 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~--~g~~l 527 (540)
.+..... .+..++|+|+|+.|+.+ .++.|.+|++ +|+.+
T Consensus 176 ~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 176 PIIQNIS--VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp EEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred EeecCCC--cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 2322222 46889999999866543 3689999998 45443
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.92 E-value=4.4e-08 Score=100.00 Aligned_cols=173 Identities=9% Similarity=0.044 Sum_probs=112.6
Q ss_pred EEEEecCCCEEEEEEe---------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 341 CFVTTVDSRFLLACGF---------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 341 ~~~~spdg~~llasgs---------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
.++++|||++++++.. .+++|.+||..+++.+..+...... ..+......++++| ||+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---------~~~g~~p~~i~~sp----dg~ 120 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---------VQGLNYDGLFRQTT----DGK 120 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------CCBCCCGGGEEECT----TSS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------cccCCCcceEEECC----CCC
Confidence 6789999998665543 3678999999999988877311000 01234566789999 999
Q ss_pred EEEEEeC--CCcEEEEEcCCCccccc----CC----------------------------CCCCcce-------------
Q psy1242 412 FIASGSA--DCTVLLWHWNARTQSIV----GE----------------------------TDTPTPR------------- 444 (540)
Q Consensus 412 ~l~sgs~--DgtV~lWd~~~~~~~~~----~~----------------------------~~~~~~~------------- 444 (540)
+|+++.. +++|.+||+.+...... +. ...++..
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9988864 57899999765321100 00 0001110
Q ss_pred -----------------------EEeccCCCC--E------------------E---EEEEcCCCCEEEEEeC-------
Q psy1242 445 -----------------------ATLTGHEQP--V------------------T---SVAISAELGLVVSGSQ------- 471 (540)
Q Consensus 445 -----------------------~~l~~h~~~--V------------------~---~v~~spdg~~lasgs~------- 471 (540)
..+.-.... + . .++++|+++.++.+..
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 000000000 0 0 1678888776665532
Q ss_pred ----CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-C--cEEEee
Q psy1242 472 ----LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-G--NRLRHE 530 (540)
Q Consensus 472 ----Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g--~~l~~~ 530 (540)
+++|.+|+. +++.+.++..+. +.+++|+|+|++|+++.++.|.+||.. | +.+..+
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEE
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEe
Confidence 346888766 888999988765 589999999999988666999999987 7 777775
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.91 E-value=1.1e-07 Score=93.76 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=133.0
Q ss_pred ccCcceEEEEcCCCCCcccCCCC-cCCCCCCCCCccccCC-CCeeeccCCCCCCcccc-------cc-CCCcCcceeeEE
Q psy1242 270 ANHQFAINRWNPDYAASIQSPSY-AETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKR-------HL-GDNFSQKLRVRH 339 (540)
Q Consensus 270 ~s~D~tv~~W~~~~~~~~~~~~~-~~~v~~~~~~~~~s~D-~~l~~~g~~~~~~~~~~-------~~-~~~~~~~~~v~~ 339 (540)
...++.|.+|++.++.......- ..........+.+.+| +.+.+++... ..... .+ ............
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~--~l~~~d~~g~~~~~~~~~~~~~~~~~~ 119 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL--GLLVVQTDGTFEEIAKKDSEGRRMQGC 119 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT--EEEEEETTSCEEECCSBCTTSCBCBCC
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC--CEEEEeCCCCEEEEEeccCCCccccCC
Confidence 56778999999766543221110 0000111224567777 7666544211 11111 11 100001111235
Q ss_pred EEEEEecCCCEEEEEEecC---------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec-
Q psy1242 340 NCFVTTVDSRFLLACGFWD---------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS- 403 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~D---------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s- 403 (540)
.++++.++|+ ++++...+ +.|..++.. ++..... .+......++++
T Consensus 120 ~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----------------~~~~~~~~i~~~~ 181 (314)
T 1pjx_A 120 NDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----------------TAFQFPNGIAVRH 181 (314)
T ss_dssp CEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----------------EEESSEEEEEEEE
T ss_pred cCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----------------cCCCCcceEEEec
Confidence 6788899998 45565444 467777765 5543322 233456789999
Q ss_pred ---cCccCCCcEEEE-EeCCCcEEEEEcCC-CcccccCCCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242 404 ---ECNITADCFIAS-GSADCTVLLWHWNA-RTQSIVGETDTPTPRATLTGHE-QPVTSVAISAELGLVVSGSQLGPVLV 477 (540)
Q Consensus 404 ---p~~~~dg~~l~s-gs~DgtV~lWd~~~-~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~Dg~v~i 477 (540)
| +++.|.. ...++.|.+|+... .... .......+.++. ..+..++++++|.++++...++.|.+
T Consensus 182 ~~d~----dg~~l~v~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 182 MNDG----RPYQLIVAETPTKKLWSYDIKGPAKIE------NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp CTTS----CEEEEEEEETTTTEEEEEEEEETTEEE------EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred ccCC----CCCEEEEEECCCCeEEEEECCCCCccc------cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 9 8866544 45688999999752 1100 001223344444 56788999999999888888889998
Q ss_pred EeCC-CcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242 478 HTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 478 w~~~-g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~ 523 (540)
|+.. ++.+..+..+.. .+.+++|+++|+.|+.+ .++.|..|+++
T Consensus 252 ~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 9775 777777766654 67999999999955543 35699999976
No 187
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.89 E-value=2.9e-08 Score=101.98 Aligned_cols=154 Identities=9% Similarity=-0.036 Sum_probs=105.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+..+++++... ++++|+.+ .+++|++++.+.... ..... .+.... ..+.. |+.|+| |+++|+++ .
T Consensus 40 ~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~--~~~~~--~~~~~~-~~lp~-V~~l~f------d~~~L~v~-~ 104 (388)
T 1xip_A 40 LQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHIT--SDSTP--LTFKWE-KEIPD-VIFVCF------HGDQVLVS-T 104 (388)
T ss_dssp CBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHH--SSSCC--CCCSEE-EECTT-EEEEEE------ETTEEEEE-E
T ss_pred ccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhc--ccccc--ccceEE-eeCCC-eeEEEE------CCCEEEEE-c
Confidence 67788899998 57788776 566798764430000 00000 000000 23556 999999 36788888 8
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP 497 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v 497 (540)
++.|++||++... .......|...+.++.+.+. -+++++.||.+.+|+. +++... + .. .|
T Consensus 105 ~~~l~v~dv~sl~-----------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---~~--~V 165 (388)
T 1xip_A 105 RNALYSLDLEELS-----------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---AQ--NV 165 (388)
T ss_dssp SSEEEEEESSSTT-----------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E---EE--SE
T ss_pred CCcEEEEEchhhh-----------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c---cC--Cc
Confidence 8999999987632 22345567777888777654 3888999999999987 455543 2 22 68
Q ss_pred eEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242 498 ESVVMSREGVIVVNYERGHIAAFTMNGNRL 527 (540)
Q Consensus 498 ~~l~fspdg~~l~s~~dg~I~lw~~~g~~l 527 (540)
.+++|||+| .++...||.+++|++++..+
T Consensus 166 s~v~WSpkG-~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 166 TSFDVTNSQ-LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp EEEEECSSE-EEEEETTSCEEEEEEETTEE
T ss_pred eEEEEcCCc-eEEEEcCCcEEEEcCCCccc
Confidence 999999999 55556789999999997663
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.88 E-value=8.4e-08 Score=106.87 Aligned_cols=157 Identities=7% Similarity=0.029 Sum_probs=107.8
Q ss_pred EEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
....++|||||++|+.+.+.+| .|++||+.+|+..... ..+ ..+.+++|+| ||+.|
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------~~~-~~~~~~~wsp----Dg~~l 185 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------LER-VKFSCMAWTH----DGKGM 185 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE---------------EEE-ECSCCEEECT----TSSEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc---------------ccC-cccceEEEEe----CCCEE
Confidence 4567889999997544444344 8999999999876543 112 2367899999 99999
Q ss_pred EEEeCCCc----------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-----C
Q psy1242 414 ASGSADCT----------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-----L 472 (540)
Q Consensus 414 ~sgs~Dgt----------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-----D 472 (540)
+.++.++. |.+|++.+.... ...+.....|...+..++|||||++|+.++. +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCccc-------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 99988876 999998763311 0122222335667889999999999887765 4
Q ss_pred CcEEEEeCC-------Cc-EEEEecCCCCCCCceEEEEeeCCCEEEE-ec----CCeEEEEecCC
Q psy1242 473 GPVLVHTTF-------GD-LLRSLDPPSGFASPESVVMSREGVIVVN-YE----RGHIAAFTMNG 524 (540)
Q Consensus 473 g~v~iw~~~-------g~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~----dg~I~lw~~~g 524 (540)
..|.+|+.. +. ....+..+.. .+.. .|+++|+.|+. +. .+.|.+|++++
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFE--GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSS--SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCC--cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 567777653 42 3555655554 2333 58899987775 32 34699999874
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.86 E-value=4e-08 Score=100.12 Aligned_cols=164 Identities=7% Similarity=-0.110 Sum_probs=100.5
Q ss_pred EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-eeEEEeeccCcce-----EEEEeccCccCCCcEEEE
Q psy1242 342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-RIVQIIFGHYGVV-----TCLSRSECNITADCFIAS 415 (540)
Q Consensus 342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-~~~~~l~~h~~~V-----t~l~~sp~~~~dg~~l~s 415 (540)
..|+|||++ |+.++.++.|.+||+.+++.......+...... +.+. ....... ..++|+| +++.++.
T Consensus 86 ~~~spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~sp----dg~~~~~ 158 (396)
T 3c5m_A 86 GFISTDERA-FFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVA--NSDCTKLVGIEILKRDWQP----LTSWEKF 158 (396)
T ss_dssp CEECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCC----CCSHHHH
T ss_pred ceECCCCCE-EEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEE--eccCCccccccccccccCC----CCcceee
Confidence 367999996 577777889999999988766555322221100 0000 0000000 0135677 7776655
Q ss_pred E-----eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCC------cEEEEeCCCc
Q psy1242 416 G-----SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLG------PVLVHTTFGD 483 (540)
Q Consensus 416 g-----s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg------~v~iw~~~g~ 483 (540)
+ ..+..|.+||+.++ +. ..+..+...+..+.|+| +++.|+.++.++ .|.+++..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g-----------~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETG-----------EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTC-----------CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred eeeccCCCcceEEEEECCCC-----------cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 4 45678889997652 22 33335677899999999 788777766543 4666776555
Q ss_pred EEEEecCCCCCCCceEEEEeeCCCEEEEe-cC-----CeEEEEecCC
Q psy1242 484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ER-----GHIAAFTMNG 524 (540)
Q Consensus 484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d-----g~I~lw~~~g 524 (540)
....+..+.....+..++|+|+|+.|+.. .+ +.|.+|++.+
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 227 NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 44555443211146788999999977653 22 3499999874
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=2.5e-08 Score=101.67 Aligned_cols=151 Identities=12% Similarity=-0.059 Sum_probs=92.6
Q ss_pred EEEEEEec-CCCEEEEEEecC------CcEEEEEccCCeEEEEEecccceeeeeeEEEeecc--CcceEEEEeccCccCC
Q psy1242 339 HNCFVTTV-DSRFLLACGFWD------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH--YGVVTCLSRSECNITA 409 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~D------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h--~~~Vt~l~~sp~~~~d 409 (540)
+..++|+| +++.|+++. .+ ..|.+|++..++.. .+ ..+ ...+..++|+| +
T Consensus 190 ~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~-~l---------------~~~~~~~~~~~~~~sp----d 248 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVR-KI---------------KEHAEGESCTHEFWIP----D 248 (396)
T ss_dssp EEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCE-ES---------------SCCCTTEEEEEEEECT----T
T ss_pred cccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCcee-Ee---------------eccCCCccccceEECC----C
Confidence 56778899 787654443 23 46888888755533 22 222 23578899999 9
Q ss_pred CcEEEEEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEe-------------
Q psy1242 410 DCFIASGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGS------------- 470 (540)
Q Consensus 410 g~~l~sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs------------- 470 (540)
|++|+.++.+ +.|.+||+.++. . ..+..... .. ++|+| +|+++++++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~-----------~-~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLE-----------N-EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCC-----------E-EEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred CCEEEEEecCCCCccceEEEEECCCCC-----------e-EEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 9988777654 459999986532 1 11211111 23 88999 999888765
Q ss_pred ---CCCcEEEEeC-CCcEEEEecCCCCCC---------CceEEEEeeCCCEEEEec--CCe--EEEEecCCc
Q psy1242 471 ---QLGPVLVHTT-FGDLLRSLDPPSGFA---------SPESVVMSREGVIVVNYE--RGH--IAAFTMNGN 525 (540)
Q Consensus 471 ---~Dg~v~iw~~-~g~~~~~l~~~~~~~---------~v~~l~fspdg~~l~s~~--dg~--I~lw~~~g~ 525 (540)
.++.|.+|+. +++. ..+..+.... .+..++|+|+|+.|+..+ ++. |.++++++.
T Consensus 315 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred ccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 2367888876 4443 3343333200 145689999999887642 344 555555543
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.82 E-value=7.6e-08 Score=96.53 Aligned_cols=147 Identities=10% Similarity=-0.002 Sum_probs=95.7
Q ss_pred EEEEEEecCCCEEEEEEecC--C--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWD--N--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~D--g--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
+.+++|||||++|+++...+ + .|.+|++.+++..... . +.. +.+++|+| ||+.|+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---------------~-~~~-~~~~~wsp----dg~~l~ 119 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---------------E-AKN-IRSLEWNE----DSRKLL 119 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---------------E-ESE-EEEEEECT----TSSEEE
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---------------c-CCC-ccceeECC----CCCEEE
Confidence 56778999999754443322 3 3778888887765544 2 233 89999999 999988
Q ss_pred EEeCC---------------------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE
Q psy1242 415 SGSAD---------------------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV 467 (540)
Q Consensus 415 sgs~D---------------------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la 467 (540)
.++.+ ..|.+||+.++ +.+..+.. . .+..++|+|+| +++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----------~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 120 IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----------EVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEEECCCC---------CCCC---------CEEEEEEEETTTT-----------EEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-----------eEEeeecC-C-CcccccCCCCe-EEE
Confidence 87642 56888887652 23234443 3 67889999999 888
Q ss_pred EEeCCC-------cEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-C--------CeEEEEecCCcEEE
Q psy1242 468 SGSQLG-------PVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R--------GHIAAFTMNGNRLR 528 (540)
Q Consensus 468 sgs~Dg-------~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-d--------g~I~lw~~~g~~l~ 528 (540)
+++.++ ...|| + +++.. .+..+ . .+..+ +|+|+.|+... + ..|.+|+ .|+...
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~ 256 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DGKEE-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMG 256 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TTEEE-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEE
T ss_pred EEecccccccccccccEEEeC-CCceE-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEe
Confidence 776653 34454 5 55543 33333 3 34444 99999887632 2 4688888 665443
No 192
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.81 E-value=6.8e-08 Score=99.25 Aligned_cols=129 Identities=9% Similarity=-0.044 Sum_probs=98.2
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+..++| |+.. ++++ .++.|++||+.+....... ..|...+.++.+.+ . .+++++.
T Consensus 90 V~~l~f--d~~~-L~v~-~~~~l~v~dv~sl~~~~~~---------------~~~~~~v~~i~~~~----p--~~av~~~ 144 (388)
T 1xip_A 90 VIFVCF--HGDQ-VLVS-TRNALYSLDLEELSEFRTV---------------TSFEKPVFQLKNVN----N--TLVILNS 144 (388)
T ss_dssp EEEEEE--ETTE-EEEE-ESSEEEEEESSSTTCEEEE---------------EECSSCEEEEEECS----S--EEEEEET
T ss_pred eeEEEE--CCCE-EEEE-cCCcEEEEEchhhhccCcc---------------ceeecceeeEEecC----C--CEEEEEC
Confidence 456677 8886 4666 7899999999876654445 56677788887765 2 3888999
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE---EEEecC-----
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL---LRSLDP----- 490 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~---~~~l~~----- 490 (540)
||++.+||+.... ... +...|+|++|||+| ++.|..||++++|+..+.. .+++..
T Consensus 145 dG~L~v~dl~~~~-----------~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~ 207 (388)
T 1xip_A 145 VNDLSALDLRTKS-----------TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE 207 (388)
T ss_dssp TSEEEEEETTTCC-----------EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred CCCEEEEEccCCc-----------ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccc
Confidence 9999999987522 221 44689999999999 6889999999999775554 556622
Q ss_pred ----CCCCCCceEEEEeeCCCEEEE
Q psy1242 491 ----PSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 491 ----~~~~~~v~~l~fspdg~~l~s 511 (540)
|. ..|.+|.|.+++.++++
T Consensus 208 ~~~~~~--~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 208 ELPVEE--YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TSCTTT--SEEEEEEESSSSEEEEE
T ss_pred cccCCC--eeEEEEEEecCCeEEEE
Confidence 33 37899999999999987
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.81 E-value=2e-06 Score=83.69 Aligned_cols=227 Identities=9% Similarity=0.017 Sum_probs=139.5
Q ss_pred CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cceee
Q psy1242 262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRV 337 (540)
Q Consensus 262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v 337 (540)
.++.+.++...++.|..|++. +...... ... .......+.+.+++.+.++....... ......+.+. .....
T Consensus 24 ~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~~~~g~~~~~~~~~~~~ 99 (299)
T 2z2n_A 24 DKGKVWITQHKANMISCINLD-GKITEYP-LPT-PDAKVMCLTISSDGEVWFTENAANKI-GRITKKGIIKEYTLPNPDS 99 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-CCEEEEE-CSS-TTCCEEEEEECTTSCEEEEETTTTEE-EEECTTSCEEEEECSSTTC
T ss_pred CCCCEEEEecCCCcEEEEcCC-CCeEEec-CCc-ccCceeeEEECCCCCEEEeCCCCCeE-EEECCCCcEEEEeCCCcCC
Confidence 334446666667889999987 3322111 000 01122235566777766654211111 1111110000 00011
Q ss_pred EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
....+++.++|+ ++++...++.|.+||. +++..... +..+...+.++++++ +|...++..
T Consensus 100 ~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~--------------~~~~~~~~~~i~~~~----~g~l~v~~~ 159 (299)
T 2z2n_A 100 APYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYE--------------LPNKGSYPSFITLGS----DNALWFTEN 159 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE--------------CSSTTCCEEEEEECT----TSCEEEEET
T ss_pred CceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEec--------------CCCCCCCCceEEEcC----CCCEEEEeC
Confidence 356778889998 5677767889999998 56544322 023456789999999 888888777
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRA-TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFA 495 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~ 495 (540)
.++.|..||. .. +... .+..+...+.+++++++|.++++...++.|.+++.+++.... +..+..
T Consensus 160 ~~~~i~~~~~-~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-- 225 (299)
T 2z2n_A 160 QNNAIGRITE-SG-----------DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-- 225 (299)
T ss_dssp TTTEEEEECT-TC-----------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--
T ss_pred CCCEEEEEcC-CC-----------cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC--
Confidence 7889999987 31 1211 133445578899999999987777778888888777765432 222223
Q ss_pred CceEEEEeeCCCEEEEe-cCCeEEEEecCCcE
Q psy1242 496 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNR 526 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~ 526 (540)
.+.+++++++|++.++. .++.|..|+++|+.
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~ 257 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTSNNII 257 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEETTTEE
T ss_pred CceeEEECCCCCEEEeccCCceEEEECCCCce
Confidence 67899999999977765 56899999997753
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.80 E-value=3.9e-07 Score=102.00 Aligned_cols=237 Identities=11% Similarity=-0.039 Sum_probs=139.2
Q ss_pred eeeecCCcEEEEEccCc-----ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-----------
Q psy1242 257 YVTLHMPSVVTVTANHQ-----FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA----------- 320 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D-----~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~----------- 320 (540)
.+.+++++..++.++.+ .+|++||..++......... + ....+.|++| ..++.++....
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~--~--~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW--V--KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE--E--ESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC--c--eeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 34555555545544332 67999999887643221111 0 0124679999 55544332211
Q ss_pred --CccccccCCCcCccee--------eEEEEEEEecCCCEEEEEEec----CCcEEEEEccCC--eEEEEEecccceeee
Q psy1242 321 --PVPKRHLGDNFSQKLR--------VRHNCFVTTVDSRFLLACGFW----DNSFRVFSTDNA--RIVQIIFGHYGVVTS 384 (540)
Q Consensus 321 --~~~~~~~~~~~~~~~~--------v~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~g--~~~~~l~~~~~~v~~ 384 (540)
......++........ .....+.|||||++|+++... ...|.+||+.++ +....+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--------- 312 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--------- 312 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---------
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---------
Confidence 0122223222111111 125677889999986555432 347999999877 313444
Q ss_pred eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc
Q psy1242 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS 460 (540)
Q Consensus 385 ~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s 460 (540)
..+.+.+.... +| +|+.|+..+.+ +.|.+||+.... ......+..+...+..++++
T Consensus 313 ------~~~~~~~~~~~-~~----dg~~l~~~s~~~~~~~~l~~~d~~~~~---------~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 313 ------IPDLKAQWDFV-DG----VGDQLWFVSGDGAPLKKIVRVDLSGST---------PRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp ------ECSSSSCEEEE-EE----ETTEEEEEECTTCTTCEEEEEECSSSS---------CEEEEEECCCSSEEEEEEEE
T ss_pred ------cCCCCceEEEE-ec----cCCEEEEEECCCCCCCEEEEEeCCCCc---------cccEEEecCCCCeEEEEEEE
Confidence 34444454443 47 78888777754 458889876521 01233344555567778887
Q ss_pred CCCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-e-c---CCeEEEEecCCcEEEe
Q psy1242 461 AELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-Y-E---RGHIAAFTMNGNRLRH 529 (540)
Q Consensus 461 pdg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~-~---dg~I~lw~~~g~~l~~ 529 (540)
++.++++...|+..+|| +.+|+.++.+..+... .+..++++|++..|+. . + .++|++||+.+..+..
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG-SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC-EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 56788889999998887 4467777777754221 5788999999986653 2 2 3789999987544433
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.79 E-value=7.4e-08 Score=107.05 Aligned_cols=157 Identities=12% Similarity=0.010 Sum_probs=104.3
Q ss_pred eEEEEEEEecCCCEEEEE----EecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 337 VRHNCFVTTVDSRFLLAC----GFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 337 v~~~~~~~spdg~~llas----gs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
..+..++|||||++|+.+ |+.+.+|++||+.+|+.+ ... +.+. ....++|+| ||+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--------------~~~~--~~~~~~wsp----Dg~ 180 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--------------IEGG--KYATPKWTP----DSK 180 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--------------BSCC--TTCCCEECT----TSS
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--------------cCcc--cccceEEec----CCC
Confidence 346788899999975444 334467999999998764 111 0111 126789999 999
Q ss_pred EEEEEeCCCc-------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC----c
Q psy1242 412 FIASGSADCT-------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG----P 474 (540)
Q Consensus 412 ~l~sgs~Dgt-------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg----~ 474 (540)
.|+.++.|.. |++|++.+.... ...+....+|...+.+++|||||++|+.++.++ .
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 9999998877 999998764311 123333345667889999999999988877665 4
Q ss_pred EEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCC
Q psy1242 475 VLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNG 524 (540)
Q Consensus 475 v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g 524 (540)
|.+++. +++ .+.+..+.. .+....+ ++|.+++.+. ++.|.+|++++
T Consensus 254 l~~~~~~~~~-~~~l~~~~~--~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 254 VYWKRPGEKD-FRLLVKGVG--AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp EEEECTTCSS-CEEEEECSS--CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred EEEEcCCCCc-eEEeecCCC--ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence 555554 344 344444444 3455666 6777444443 47899999873
No 196
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.76 E-value=2.8e-07 Score=94.00 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEeccCccCCCcEEEEEeC-----------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242 400 LSRSECNITADCFIASGSA-----------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS 468 (540)
Q Consensus 400 l~~sp~~~~dg~~l~sgs~-----------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las 468 (540)
++++| +++.++.+.. ..+|.+||+.+ .+.+..+..+. +.+++|+|||++|++
T Consensus 259 ~a~~~----dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-----------~~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 259 VGLHR----ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-----------KQRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp EEEET----TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-----------TEEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred EEEec----CCCeEEEEEccCCCcccccCCCceEEEEECCC-----------CcEEEEEecCC--eeEEEECCCCCEEEE
Confidence 67888 7777665532 34899999876 45778887776 899999999999988
Q ss_pred EeCCCcEEEEeC-CC--cEEEEecCCCCCCCceEEEEeeCCC
Q psy1242 469 GSQLGPVLVHTT-FG--DLLRSLDPPSGFASPESVVMSREGV 507 (540)
Q Consensus 469 gs~Dg~v~iw~~-~g--~~~~~l~~~~~~~~v~~l~fspdg~ 507 (540)
++. ++|.+|+. ++ +.+.++..... .+..++++|+|+
T Consensus 322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~--~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG-GNVNVYDISQPEPKLLRTIEGAAE--ASLQVQFHPVGG 360 (361)
T ss_dssp ECS-SCEEEEECSSSSCEEEEEETTSCS--SEEEEEECCCSC
T ss_pred eCC-CeEEEEECCCCcceeeEEeccCCC--CcEEEEecCCCC
Confidence 886 99999975 88 88888855554 578999999986
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.75 E-value=2.2e-06 Score=83.32 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=137.1
Q ss_pred ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cce
Q psy1242 260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKL 335 (540)
Q Consensus 260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~ 335 (540)
+..++.+.++...++.|..|++.. ..... ... ........+.+.+++.+.++....... ......+... ...
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~d~~g~~~~~~~~~~ 139 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKKG-IIKEY-TLP-NPDSAPYGITEGPNGDIWFTEMNGNRI-GRITDDGKIREYELPNK 139 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTS-CEEEE-ECS-STTCCEEEEEECTTSCEEEEETTTTEE-EEECTTCCEEEEECSST
T ss_pred ECCCCCEEEeCCCCCeEEEECCCC-cEEEE-eCC-CcCCCceeeEECCCCCEEEEecCCceE-EEECCCCCEEEecCCCC
Confidence 334455566666678899998752 21111 000 001122235566777766654221111 1111010000 000
Q ss_pred eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
......+++.++|+ ++++...++.|.++|. +++..... +..+...+.++++++ +|...++
T Consensus 140 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~--------------~~~~~~~~~~i~~~~----~g~l~v~ 199 (299)
T 2z2n_A 140 GSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFK--------------IPTPASGPVGITKGN----DDALWFV 199 (299)
T ss_dssp TCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE--------------CSSTTCCEEEEEECT----TSSEEEE
T ss_pred CCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEee--------------CCCCCCcceeEEECC----CCCEEEE
Confidence 11356778899997 5666666789999998 66654321 033455688999999 8887777
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGF 494 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~ 494 (540)
...++.|.+|+. .... ....+..+...+.+++++++|.++++...++.|..++.+++.... +..+..
T Consensus 200 ~~~~~~i~~~~~-~g~~----------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~- 267 (299)
T 2z2n_A 200 EIIGNKIGRITT-SGEI----------TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSA- 267 (299)
T ss_dssp ETTTTEEEEECT-TCCE----------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSC-
T ss_pred ccCCceEEEECC-CCcE----------EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCC-
Confidence 767889999987 3210 111233455678999999999977777677888888777754322 222233
Q ss_pred CCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242 495 ASPESVVMSREGVIVVNYERGHIAAFTMNGN 525 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~ 525 (540)
.+.++++ ++|.+.++...+.|..++++.+
T Consensus 268 -~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 268 -EPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp -CEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred -ccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 6789999 9999888766788888887643
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.69 E-value=6.5e-06 Score=89.08 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=144.6
Q ss_pred cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC-CCcCccee----eE
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQKLR----VR 338 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-~~~~~~~~----v~ 338 (540)
..++++.+.+++|.++|..+.+....+.. +.....+.+++|+..+.+++.+. ......+. ........ ..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~~~dg-~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVIGRDG-KVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEEETTS-EEEEEETTSSSCCEEEEEECCSE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEEcCCC-eEEEEECCCCCCcEeEEEecCCC
Confidence 45678888999999999987654432221 11222467899997665554322 12222221 01110111 12
Q ss_pred EEEEEEe----cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceEEEEeccCccCCCcEE
Q psy1242 339 HNCFVTT----VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVTCLSRSECNITADCFI 413 (540)
Q Consensus 339 ~~~~~~s----pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt~l~~sp~~~~dg~~l 413 (540)
...++++ |||++++++..++++|.|+|..+.+.++.+......+.. ...|.. .+..+..++. ...++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~-----~~~~p~~rva~i~~s~~---~~~~v 313 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-----QEYHPEPRVAAILASHY---RPEFI 313 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT-----CCEESCCCEEEEEECSS---SSEEE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc-----ccccCCCceEEEEEcCC---CCEEE
Confidence 4678899 699998888889999999999999998877321100000 001222 6788888882 24556
Q ss_pred EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcEEEEecC-
Q psy1242 414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDLLRSLDP- 490 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~~~~l~~- 490 (540)
++...+|.|.++|...... ..+..+ .......++.|+|+++++++++ .++.|.+++. +++++..+..
T Consensus 314 v~~~~~g~v~~vd~~~~~~---------~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNN---------LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp EEETTTTEEEEEETTCSSE---------EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEecCCCeEEEEecCCCcc---------ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 6666789999999765221 112222 2344577889999999887665 5678877755 8888777765
Q ss_pred CCCCCCceEEE-EeeCCC-EEEEe--cCCeEEEEecC
Q psy1242 491 PSGFASPESVV-MSREGV-IVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 491 ~~~~~~v~~l~-fspdg~-~l~s~--~dg~I~lw~~~ 523 (540)
.....+-..+. ++|++. +.+++ .++.|.+++.+
T Consensus 384 g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 384 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 22211112344 478744 44454 46899999976
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.68 E-value=1.9e-06 Score=89.53 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=136.3
Q ss_pred eeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-CccccccCCCcC---
Q psy1242 257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA-PVPKRHLGDNFS--- 332 (540)
Q Consensus 257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~-~~~~~~~~~~~~--- 332 (540)
.+.+..+..+.++...+..|++|++.++........ ..... +.+++++..+..++.... ..........+.
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 344556677788888889999999876543322111 11222 677888764443322211 110000000000
Q ss_pred -----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcce--EEEEeccC
Q psy1242 333 -----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV--TCLSRSEC 405 (540)
Q Consensus 333 -----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~V--t~l~~sp~ 405 (540)
........+++++|++..|++ +..++.|+.||..++... .+.+.. ..++...- ..++|+|.
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~----------~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLE----------LSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECC----------CCSCCCCSSCCEEEEETT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccc----------ccCCCCCCccccEEEeCC
Confidence 001112456788995555555 566889999999876532 220000 02222222 38999992
Q ss_pred ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEEEEEEcCCCCEEEEEe
Q psy1242 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVTSVAISAELGLVVSGS 470 (540)
Q Consensus 406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~~v~~spdg~~lasgs 470 (540)
++.++++...+++|+.|+.+.. +..+.++ -.....++++++|.++++-+
T Consensus 278 ---~g~lyv~d~~~~~I~~~~~~g~-------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 278 ---DSNFYMSDQNLSSVYKITPDGE-------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp ---TTEEEEEETTTTEEEEECTTCC-------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred ---CCEEEEEeCCCCEEEEEecCCC-------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 3566666677889999986542 1222222 24578999999999888887
Q ss_pred -CCCcEEEEe-CCCcEEEEecCCC-------------CCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242 471 -QLGPVLVHT-TFGDLLRSLDPPS-------------GFASPESVVMSREGVIVVN-YERGHIAAFTM 522 (540)
Q Consensus 471 -~Dg~v~iw~-~~g~~~~~l~~~~-------------~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~ 522 (540)
.++.|+.++ .+|.. .++.++. ....+..++++++|.++++ ...++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 888999998 57764 4443321 0114789999999887776 45678887765
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.68 E-value=3.6e-07 Score=88.06 Aligned_cols=157 Identities=9% Similarity=0.072 Sum_probs=108.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
..+++++++|+ ++++.. ++.|.+||...+... .+. ......+.++++++ +|+.+++...
T Consensus 69 p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~-~~~--------------~~~~~~p~~i~~~~----~g~l~v~~~~ 127 (270)
T 1rwi_B 69 PQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT-VLP--------------FDGLNYPEGLAVDT----QGAVYVADRG 127 (270)
T ss_dssp CCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE-ECC--------------CCSCSSEEEEEECT----TCCEEEEEGG
T ss_pred cceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe-eee--------------cCCcCCCcceEECC----CCCEEEEECC
Confidence 34577789998 566665 889999998755432 220 12335688999999 8988887777
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC-CCCCCCc
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP-PSGFASP 497 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~-~~~~~~v 497 (540)
++.|.+|+..... ...........+.+++++++|+++++...++.|.+++..+........ +.. .+
T Consensus 128 ~~~i~~~~~~~~~-----------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p 194 (270)
T 1rwi_B 128 NNRVVKLAAGSKT-----------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT--AP 194 (270)
T ss_dssp GTEEEEECTTCCS-----------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC--SE
T ss_pred CCEEEEEECCCce-----------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC--Cc
Confidence 8899999743311 111112233457789999999988887778899988876554433322 222 57
Q ss_pred eEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEe
Q psy1242 498 ESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRH 529 (540)
Q Consensus 498 ~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~ 529 (540)
.+++++++|.+.++. .++.|.+|++++.....
T Consensus 195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred eEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence 899999999777764 46889999998765443
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.67 E-value=2.8e-06 Score=83.74 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=130.1
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc--------CCCcCcc
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--------GDNFSQK 334 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~--------~~~~~~~ 334 (540)
...++++......|..|++.+..... ..+ ......+.+.+|+.+.++.. ........ .......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~----~~~~~~i~~~~dG~l~v~~~---~~l~~~d~~~g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQR-VTM----DAPVSSVALRQSGGYVATIG---TKFCALNWKEQSAVVLATVDNDK 95 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEE-EEC----SSCEEEEEEBTTSSEEEEET---TEEEEEETTTTEEEEEEECCTTC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEE-EeC----CCceEEEEECCCCCEEEEEC---CeEEEEECCCCcEEEEEecCCCC
Confidence 45567777778899999987654321 111 12223466778887665431 11111111 1011111
Q ss_pred eeeEEEEEEEecCCCEEEEEEecC---------CcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 335 LRVRHNCFVTTVDSRFLLACGFWD---------NSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 335 ~~v~~~~~~~spdg~~llasgs~D---------gsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
.......++++|+|+. +++...+ ..-.||.+.. ++... + ..+....+.++|+|
T Consensus 96 ~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~---------------~~~~~~pngi~~sp 158 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y---------------FDQVDISNGLDWSL 158 (297)
T ss_dssp SSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E---------------EEEESBEEEEEECT
T ss_pred CCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEE-E---------------eeccccccceEEcC
Confidence 1234678888999994 4543221 3345555543 33322 2 23344568899999
Q ss_pred CccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q psy1242 405 CNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG 482 (540)
Q Consensus 405 ~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g 482 (540)
+++.| ++.+.++.|.+|+++...+... ..+....+..+......+++.++|.+.++...++.|..|+. +|
T Consensus 159 ----dg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 159 ----DHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp ----TSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred ----CCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 88866 5556688999999753221100 01122333344456789999999998888888888988887 59
Q ss_pred cEEEEecCCCCCCCceEEEEe-eCCCEEEE
Q psy1242 483 DLLRSLDPPSGFASPESVVMS-REGVIVVN 511 (540)
Q Consensus 483 ~~~~~l~~~~~~~~v~~l~fs-pdg~~l~s 511 (540)
+++..+..+.. .+.+++|. |+++.|+.
T Consensus 231 ~~~~~i~~p~~--~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 231 KRLQTVKLPVD--KTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CEEEEEECSSS--BEEEEEEESGGGCEEEE
T ss_pred eEEEEEECCCC--CceEEEEeCCCCCEEEE
Confidence 99999987765 68999998 88886654
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.65 E-value=1.1e-06 Score=98.51 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
....++|||||++|+.+.+.+| +|++||+.+|+.+... .+...+..++|+| | +.|
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~----------------~~~~~~~~~~wsp----D-~~l 222 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE----------------LKWVKFSGLAWLG----N-DAL 222 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE----------------EEEEESCCCEEST----T-SEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc----------------CCCceeccEEEEC----C-CEE
Confidence 4667889999998655544434 5999999999875432 1222245789999 9 889
Q ss_pred EEEeCCCc--------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----c
Q psy1242 414 ASGSADCT--------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----P 474 (540)
Q Consensus 414 ~sgs~Dgt--------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~ 474 (540)
+.++.|+. |.+|++.+.... ...+.....+...+.++.|||||++|+..+.++ .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGG-------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchh-------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 88887665 888887653211 112222233444688999999999888777554 6
Q ss_pred EEEEeC-CC--cEEEEecCCCCCCCceEEEEeeCCCEEEEe-c----CCeEEEEecCC
Q psy1242 475 VLVHTT-FG--DLLRSLDPPSGFASPESVVMSREGVIVVNY-E----RGHIAAFTMNG 524 (540)
Q Consensus 475 v~iw~~-~g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~----dg~I~lw~~~g 524 (540)
|++|+. ++ +....+..+.. .+... ++|+|+.|+.. . .+.|.+|++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~--~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLK--AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEEECCCCCCcccEEecCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 777765 44 31455555544 23444 45888877763 2 35699999875
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=2.9e-06 Score=94.21 Aligned_cols=233 Identities=12% Similarity=0.064 Sum_probs=134.4
Q ss_pred eecCCcEEEE-----EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC------------C
Q psy1242 259 TLHMPSVVTV-----TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA------------P 321 (540)
Q Consensus 259 ~~~~~~~~lv-----s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~------------~ 321 (540)
.+++++..++ +++.+.+|++||+.+++..... .. .+ ....+.|+ |+..++.++.... .
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~-~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK-DV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE-EE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC-Cc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 4444444444 3445589999999887633211 10 01 01346789 8865443322211 1
Q ss_pred ccccccCCCcCcc---------eeeEEEEEEEecCCCEEEEEEec---CCcEEEEEccCCe-EEEEEecccceeeeeeEE
Q psy1242 322 VPKRHLGDNFSQK---------LRVRHNCFVTTVDSRFLLACGFW---DNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQ 388 (540)
Q Consensus 322 ~~~~~~~~~~~~~---------~~v~~~~~~~spdg~~llasgs~---Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~ 388 (540)
...+.++...... .......+.+||||++|+++.+. ++.|.++|+.++. ....+
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l------------- 276 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV------------- 276 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE-------------
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE-------------
Confidence 2222333222111 11224567889999987666553 3579999998763 33444
Q ss_pred EeeccCcceEEEEeccCccCCCcEE-EEEeCC---CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC
Q psy1242 389 IIFGHYGVVTCLSRSECNITADCFI-ASGSAD---CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464 (540)
Q Consensus 389 ~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~ 464 (540)
..+.+..... +++ +|..| +++..+ +.|.++++..... .....+..|...+. .|+++++
T Consensus 277 --~~~~~~~~~~-~~~----~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 277 --QGDLDADVSL-VDN----KGSTLYLLTNRDAPNRRLVTVDAANPGP---------AHWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp --ECSSSSCEEE-EEE----ETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCEEEECCCSSCE--EEEEETT
T ss_pred --eCCCCceEEE-Eec----cCCEEEEEECCCCCCCEEEEEeCCCCCc---------cccEEEecCCCCEE--EEEEECC
Confidence 4555555554 555 55544 444444 5788888765321 12345666666665 8899998
Q ss_pred EEEEEeC-CC--cEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecC----CeEEEEecCCcEEE
Q psy1242 465 LVVSGSQ-LG--PVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YER----GHIAAFTMNGNRLR 528 (540)
Q Consensus 465 ~lasgs~-Dg--~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~d----g~I~lw~~~g~~l~ 528 (540)
.|+.... ++ .|.+|+.+|...+.+..+... .+..+.+++++..|+. .++ +.|..|++.+..+.
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~-~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYEGKRVREVALPGLG-SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEEETTEEEEEEECTTSCEEEEECCSSSS-EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEEECCeeEEEEEECCCCeeEEeecCCCc-eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7776654 44 466677777777777654321 4566777888886664 333 78999998744333
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.60 E-value=1.6e-05 Score=77.27 Aligned_cols=227 Identities=9% Similarity=0.032 Sum_probs=137.5
Q ss_pred CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cceeeE
Q psy1242 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVR 338 (540)
Q Consensus 263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~ 338 (540)
++.+.++...++.|.+|+.. +..... .... .......+.+.+++.+.++....... ......+... ......
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v-~~~d~~g~~~~~~~~~~~~~ 105 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIKEF-EVPT-PDAKVMCLIVSSLGDIWFTENGANKI-GKLSKKGGFTEYPLPQPDSG 105 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEE-ECSS-TTCCEEEEEECTTSCEEEEETTTTEE-EEECTTSCEEEEECSSTTCC
T ss_pred CCCEEEEcCCCCeEEEECCC-CceEEE-ECCC-CCCcceeEEECCCCCEEEEecCCCeE-EEECCCCCeEEecCCCCCCC
Confidence 34446666667888889876 332211 0000 01112234556667666543211111 1100000000 000123
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
..++++.++|+ ++++...++.|..+|.. ++..... +......+.++++++ +|+..++...
T Consensus 106 ~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~--------------~~~~~~~~~~i~~d~----~g~l~v~~~~ 165 (300)
T 2qc5_A 106 PYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYD--------------LPNKGSYPAFITLGS----DNALWFTENQ 165 (300)
T ss_dssp EEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEE--------------CSSTTCCEEEEEECT----TSSEEEEETT
T ss_pred CccceECCCCC-EEEEccCCCeEEEECCC-CCEEEcc--------------CCCCCCCceeEEECC----CCCEEEEecC
Confidence 56778889998 56666667889999987 6654221 023446788999999 8887777666
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFAS 496 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~~ 496 (540)
++.|..++... +.. ..+..+...+.+++++++|.+.++....+.|.+++.+++.... +..+.. .
T Consensus 166 ~~~i~~~~~~g------------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~ 231 (300)
T 2qc5_A 166 NNSIGRITNTG------------KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA--R 231 (300)
T ss_dssp TTEEEEECTTC------------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--C
T ss_pred CCeEEEECCCC------------cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC--C
Confidence 78899998632 111 1223445678999999999887777777788888777766543 222223 5
Q ss_pred ceEEEEeeCCCEEEEe-cCCeEEEEecCCcEE
Q psy1242 497 PESVVMSREGVIVVNY-ERGHIAAFTMNGNRL 527 (540)
Q Consensus 497 v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l 527 (540)
+.++++.++|++.++. .++.|..|+++|+..
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITNDNTIQ 263 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECCCCcEE
Confidence 7899999999976664 368999999987654
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.58 E-value=3.7e-06 Score=82.87 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=111.2
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++++++|+ ++++. ++.|.+||.++++......... ......++.++++| +|++.++...
T Consensus 56 ~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~~-----------~~~~~~~~di~~d~----dG~l~~~~~~ 117 (297)
T 3g4e_A 56 VSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVDN-----------DKKNNRFNDGKVDP----AGRYFAGTMA 117 (297)
T ss_dssp EEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECCT-----------TCSSEEEEEEEECT----TSCEEEEEEE
T ss_pred eEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecCC-----------CCCCCCCCCEEECC----CCCEEEecCC
Confidence 67888999999 44543 6789999998877543331000 01234578899999 8987765432
Q ss_pred ---------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEe---CCCcEE
Q psy1242 419 ---------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHT---TFGDLL 485 (540)
Q Consensus 419 ---------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~---~~g~~~ 485 (540)
.....||.+... ++ ...+..+......++|+|+++.+ ++.+.++.|.+++ .+|.+.
T Consensus 118 ~~~~~~~~~~~~~~l~~~d~~----------g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 118 EETAPAVLERHQGALYSLFPD----------HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp CCSBTTBCCTTCEEEEEECTT----------SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred cccccccccCCCcEEEEEECC----------CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc
Confidence 234567766531 11 22233334456889999999865 5556678888774 355432
Q ss_pred -----EEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeec-CCcceecC
Q psy1242 486 -----RSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESH-NDNLQKTA 540 (540)
Q Consensus 486 -----~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~-~~~V~~va 540 (540)
..+....+ .+..+++.++|++.++ ...+.|..|+++ |+.+..+.. ...+++++
T Consensus 187 ~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~ 247 (297)
T 3g4e_A 187 NRRSVYKLEKEEQ--IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC 247 (297)
T ss_dssp EEEEEEECCGGGC--EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred CcEEEEECCCCCC--CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence 22222223 5689999999987776 456889999997 999888873 35666653
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.57 E-value=2.3e-06 Score=85.77 Aligned_cols=156 Identities=10% Similarity=-0.032 Sum_probs=108.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS- 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs- 417 (540)
...++++++++ ++++...++.|.+||..+++....+..... .++......+++ . ++..+++..
T Consensus 86 p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------~~~~~~p~~i~~-~----~~~lyv~~~~ 149 (328)
T 3dsm_A 86 PRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDM----------DMESGSTEQMVQ-Y----GKYVYVNCWS 149 (328)
T ss_dssp EEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTC----------CTTTCBCCCEEE-E----TTEEEEEECT
T ss_pred CcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCc----------cccCCCcceEEE-E----CCEEEEEcCC
Confidence 56777889985 667766899999999999988877621110 011124556777 4 566566554
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeC-CCcEEE
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL----------GPVLVHTT-FGDLLR 486 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D----------g~v~iw~~-~g~~~~ 486 (540)
.+++|.++|..+. +.+..+... ....+++++++|++++++..+ +.|.+++. +++...
T Consensus 150 ~~~~v~viD~~t~-----------~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 150 YQNRILKIDTETD-----------KVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp TCCEEEEEETTTT-----------EEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCC-----------eEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 4899999998763 334444332 234678899999987777654 67877765 678777
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g 524 (540)
.+..+.+. .+..++|+|+++.|..+.. .|.+||+..
T Consensus 218 ~~~~~~g~-~p~~la~~~d~~~lyv~~~-~v~~~d~~t 253 (328)
T 3dsm_A 218 QFKFKLGD-WPSEVQLNGTRDTLYWINN-DIWRMPVEA 253 (328)
T ss_dssp EEECCTTC-CCEEEEECTTSCEEEEESS-SEEEEETTC
T ss_pred EEecCCCC-CceeEEEecCCCEEEEEcc-EEEEEECCC
Confidence 77654332 5789999999998887654 899999873
No 207
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.55 E-value=3.9e-06 Score=90.76 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=107.3
Q ss_pred EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCC
Q psy1242 350 FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNA 429 (540)
Q Consensus 350 ~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~ 429 (540)
.++++...+++|.++|..+++.+..+ .. ...+.+++++| ||+++++++.|+.|.+||+..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i---------------~~-g~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVL---------------DT-GYAVHISRLSA----SGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE---------------EC-SSCEEEEEECT----TSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEE---------------eC-CCCccceEECC----CCCEEEEEcCCCeEEEEECCC
Confidence 36788888999999999999998887 32 23566899999 999999999999999999852
Q ss_pred CcccccCCCCCCcceEEeccCCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeC-CCcEEEEecCCC----------C
Q psy1242 430 RTQSIVGETDTPTPRATLTGHEQPVTSVAIS----AELGLVVSGSQ-LGPVLVHTT-FGDLLRSLDPPS----------G 493 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s----pdg~~lasgs~-Dg~v~iw~~-~g~~~~~l~~~~----------~ 493 (540)
.+ .+.+..+.... ....++|+ |||+++++++. ++++.|++. +.+.+.++.... .
T Consensus 228 ~t---------~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 228 KE---------PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp SS---------CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred CC---------CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 11 34555565433 35789999 69998877664 578877654 667666554211 0
Q ss_pred -------------------------------------------CCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEE
Q psy1242 494 -------------------------------------------FASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRL 527 (540)
Q Consensus 494 -------------------------------------------~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l 527 (540)
...+..+.|+|+|++++++ .++.|.++|.. ++++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 0012356788999987653 46889999987 5555
Q ss_pred Eee
Q psy1242 528 RHE 530 (540)
Q Consensus 528 ~~~ 530 (540)
...
T Consensus 378 ~~i 380 (567)
T 1qks_A 378 AIE 380 (567)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.53 E-value=1.4e-05 Score=79.97 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=126.5
Q ss_pred cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccc--------cCCCcCcce
Q psy1242 264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH--------LGDNFSQKL 335 (540)
Q Consensus 264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~--------~~~~~~~~~ 335 (540)
..++++...++.|..|++.++..... .+. .....+.+++|+.+.+++.. ...... +........
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~----~~v~~i~~~~dg~l~v~~~~---gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVH-ALP----FMGSALAKISDSKQLIASDD---GLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEE-ECS----SCEEEEEEEETTEEEEEETT---EEEEEETTTCCEEEEECSSTTCT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEE-ECC----CcceEEEEeCCCeEEEEECC---CEEEEECCCCcEEEEeeCCCCCC
Confidence 56667777788999999876542211 111 12234567788876665421 111111 111000011
Q ss_pred eeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 336 RVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 336 ~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
.....+++++|+|+. +++...+ +...||.+++++... + ..+......++|+| +|+
T Consensus 133 ~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~~g~~~~-~---------------~~~~~~~~~i~~s~----dg~ 191 (326)
T 2ghs_A 133 GNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVAKGKVTK-L---------------FADISIPNSICFSP----DGT 191 (326)
T ss_dssp TEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEETTEEEE-E---------------EEEESSEEEEEECT----TSC
T ss_pred CCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEeCCcEEE-e---------------eCCCcccCCeEEcC----CCC
Confidence 134678888999994 4444321 223444333454332 2 22334567899999 898
Q ss_pred EEEE-EeCCCcEEEEEcCCCcc-cccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEec
Q psy1242 412 FIAS-GSADCTVLLWHWNARTQ-SIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLD 489 (540)
Q Consensus 412 ~l~s-gs~DgtV~lWd~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~ 489 (540)
.|+. .+.++.|.+|+++...+ .. ...+....+.+......++++.++|.+.++...++.|.+|+.+++.+..+.
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~----~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPT----GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE 267 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBS----SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCEEEEEEcccccCCcc----cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence 6644 45678999999751111 10 001122333334456788999999998887777788988888888888887
Q ss_pred CCCCCCCceEEEEe-eCCCEEEE
Q psy1242 490 PPSGFASPESVVMS-REGVIVVN 511 (540)
Q Consensus 490 ~~~~~~~v~~l~fs-pdg~~l~s 511 (540)
.+.. .+.+++|+ ++++.|+.
T Consensus 268 ~~~~--~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 268 VPGK--QTTCPAFIGPDASRLLV 288 (326)
T ss_dssp CSCS--BEEEEEEESTTSCEEEE
T ss_pred CCCC--CcEEEEEecCCCCEEEE
Confidence 7665 58999998 88876654
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.46 E-value=3.6e-05 Score=74.65 Aligned_cols=224 Identities=8% Similarity=0.036 Sum_probs=134.2
Q ss_pred cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----ccee
Q psy1242 261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLR 336 (540)
Q Consensus 261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~ 336 (540)
..++.+.++...++.|..++.. +..... .... .......+.+.+++.+.++....... ......+... ....
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~~~~g~~~~~~~~~~~ 145 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKK-GGFTEY-PLPQ-PDSGPYGITEGLNGDIWFTQLNGDRI-GKLTADGTIYEYDLPNKG 145 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEE-ECSS-TTCCEEEEEECSTTCEEEEETTTTEE-EEECTTSCEEEEECSSTT
T ss_pred CCCCCEEEEecCCCeEEEECCC-CCeEEe-cCCC-CCCCCccceECCCCCEEEEccCCCeE-EEECCCCCEEEccCCCCC
Confidence 3444556666667788889876 332111 1100 01112235556677666654211111 1110000000 0001
Q ss_pred eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
....++++.++|+ +.++...++.|.+++. +++... +. ...+...+.++++++ +|...++.
T Consensus 146 ~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~-------------~~~~~~~~~~i~~d~----~g~l~v~~ 205 (300)
T 2qc5_A 146 SYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YP-------------LPTNAAAPVGITSGN----DGALWFVE 205 (300)
T ss_dssp CCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EE-------------CSSTTCCEEEEEECT----TSSEEEEE
T ss_pred CCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-ee-------------CCCCCCCcceEEECC----CCCEEEEc
Confidence 1356788899998 5677666788999998 565443 21 123456788999999 88877777
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGF 494 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~ 494 (540)
...+.|.+++... +.. ..+..+...+.+++++++|.+.++...++.|..++.+++.... +.....
T Consensus 206 ~~~~~i~~~~~~g------------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~- 272 (300)
T 2qc5_A 206 IMGNKIGRITTTG------------EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENA- 272 (300)
T ss_dssp TTTTEEEEECTTC------------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTC-
T ss_pred cCCCEEEEEcCCC------------cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCC-
Confidence 6778899998632 111 1233455678999999999977777677888888777765432 222223
Q ss_pred CCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 495 ASPESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
.+.++++.++|++.++... .|..++++
T Consensus 273 -~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 273 -EPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp -CCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred -ccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 5789999999997777654 77777754
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.44 E-value=1.3e-05 Score=83.09 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=104.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++++++|+ |+++...++.|++||..+++..... .. ..... ++|++ +++.|++++.
T Consensus 133 P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~---------------~~-~~~~~-ia~~~----~g~~l~~~d~ 190 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVH---------------PG-FKGGK-PAVTK----DKQRVYSIGW 190 (409)
T ss_dssp EEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEE---------------ET-CCBCB-CEECT----TSSEEEEEBS
T ss_pred ceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEee---------------cc-CCCCc-eeEec----CCCcEEEEec
Confidence 56778899998 7788878899999999877766544 22 22233 89999 8999988888
Q ss_pred CC--cEEEEEcCCCcccccCCCCCCcceEEe---cc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEe----
Q psy1242 419 DC--TVLLWHWNARTQSIVGETDTPTPRATL---TG-HEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL---- 488 (540)
Q Consensus 419 Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l---~~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l---- 488 (540)
++ .|.+++..... ....+ .. ....+.+++++|+...|+.+..++.|+.|+..+.....+
T Consensus 191 ~~~~~I~~~d~~~~~-----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~ 259 (409)
T 3hrp_A 191 EGTHTVYVYMKASGW-----------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE 259 (409)
T ss_dssp STTCEEEEEEGGGTT-----------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC
T ss_pred CCCceEEEEEcCCCc-----------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc
Confidence 66 67777754311 11222 12 456678899999544555577788888887643333333
Q ss_pred -cCCCCCCCce-EEEEeeC-CCEEEE-ecCCeEEEEecCCcEEEe
Q psy1242 489 -DPPSGFASPE-SVVMSRE-GVIVVN-YERGHIAAFTMNGNRLRH 529 (540)
Q Consensus 489 -~~~~~~~~v~-~l~fspd-g~~l~s-~~dg~I~lw~~~g~~l~~ 529 (540)
.+.... .+. .++|+|+ +.+.++ ...+.|..|+.+|+....
T Consensus 260 ~~g~~~~-~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~ 303 (409)
T 3hrp_A 260 LSGSLGT-NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF 303 (409)
T ss_dssp CCSCCCC-SSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE
T ss_pred ccCCCCC-CccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEE
Confidence 122221 223 9999996 554444 346899999999874433
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.44 E-value=1.4e-05 Score=78.87 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=103.4
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec-cCcceEEEEeccCccCCCcEEEE--
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECNITADCFIAS-- 415 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~~~dg~~l~s-- 415 (540)
...++++++|+ |+++...++.|.+|+.+ ++..... .+. .+ ....+..++++| +|+..+|
T Consensus 88 ~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~-~~~-----------~~~~~~~~~~i~~d~----dG~l~~td~ 149 (305)
T 3dr2_A 88 TNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLV-GRY-----------AGKRLNSPNDLIVAR----DGAIWFTDP 149 (305)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEE-CEE-----------TTEECSCCCCEEECT----TSCEEEECC
T ss_pred cceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEE-ecc-----------CCCccCCCCCEEECC----CCCEEEeCc
Confidence 45678899998 56776666889999986 6543222 100 11 123467899999 9988886
Q ss_pred --EeC-------------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC------Cc
Q psy1242 416 --GSA-------------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL------GP 474 (540)
Q Consensus 416 --gs~-------------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D------g~ 474 (540)
|.. .+.|..+|..++ +.. .+. .......++|+|+++.|+.+... +.
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-----------~~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGS-----------PLQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSC-----------CCE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCC-----------cEE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 332 134555554321 122 222 33456789999999977776654 67
Q ss_pred EEEEeCC-CcE--EEEec-CCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeeecCCccee
Q psy1242 475 VLVHTTF-GDL--LRSLD-PPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQK 538 (540)
Q Consensus 475 v~iw~~~-g~~--~~~l~-~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~~~~~V~~ 538 (540)
|.+++.. +.+ .+.+. ...+ .+..+++.++|++.++. .+.|.+|+++|+.+..+.....+.+
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~~~~~ 281 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTPGTASN 281 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECSSCCCE
T ss_pred EEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECCCceeE
Confidence 8777543 221 11221 1222 46789999999965554 4569999999999888764444444
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.39 E-value=0.00016 Score=73.78 Aligned_cols=231 Identities=9% Similarity=-0.016 Sum_probs=127.7
Q ss_pred CcceEEEEcCCCCCcccCCCCc---C-CCCCCCCCccccCCCCeeeccCCC-CCCccccccCCCcCcc-eeeEEEEEEEe
Q psy1242 272 HQFAINRWNPDYAASIQSPSYA---E-TPGSPPGNLPLTLDPILTHPTSNN-NAPVPKRHLGDNFSQK-LRVRHNCFVTT 345 (540)
Q Consensus 272 ~D~tv~~W~~~~~~~~~~~~~~---~-~v~~~~~~~~~s~D~~l~~~g~~~-~~~~~~~~~~~~~~~~-~~v~~~~~~~s 345 (540)
.+.+|.+||..+.+......-. . ........+.+++|+..+..++.. ........-....... ..+ -.|+.+.
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~-~~~~~~~ 173 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHIH 173 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCC-CceEEEE
Confidence 4678889998764433221110 0 001123357789998766654321 1111111100000011 111 1345566
Q ss_pred cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW 425 (540)
|+++..+++.+.||++.++|. +++......... .+.+.........+.+ ++..++..+..+.+.+.
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~---------~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~v~vi 239 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA---------MLTAAQNLLTQPAQAN----KSGRIVWPVYSGKILQA 239 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc---------cccCCcceeecceeEe----cCCEEEEEcCCceEEEE
Confidence 777666777778999999999 787664331000 0001111112345566 55444444567889998
Q ss_pred EcCCCcccccCCCCCCcceEEecc----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeC-CCcE
Q psy1242 426 HWNARTQSIVGETDTPTPRATLTG----------HEQPVTSVAISAELGLVVSGSQ----------LGPVLVHTT-FGDL 484 (540)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~~~l~~----------h~~~V~~v~~spdg~~lasgs~----------Dg~v~iw~~-~g~~ 484 (540)
|+...... .+..+.- .......++++|+++.+..+.. ++.|.+.+. +++.
T Consensus 240 d~~~~~~~---------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 240 DISAAGAT---------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred eccCCcce---------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 87643211 1111110 1123445788999887766543 346766544 7888
Q ss_pred EEEecCCCCCCCceEEEEeeCCC-EEEEe--cCCeEEEEecC-CcEEEe
Q psy1242 485 LRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRH 529 (540)
Q Consensus 485 ~~~l~~~~~~~~v~~l~fspdg~-~l~s~--~dg~I~lw~~~-g~~l~~ 529 (540)
+.++.... .+.+++|+|||+ .++++ .++.|.++|+. ++.+..
T Consensus 311 v~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 311 SSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 88886544 468999999999 66664 47999999997 777766
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.38 E-value=4.1e-05 Score=76.54 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=106.0
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.+++++++|+. +++. ++.|.+||..+++...... ... ......+..++++| +|++.++...
T Consensus 92 v~~i~~~~dg~l-~v~~--~~gl~~~d~~~g~~~~~~~-~~~----------~~~~~~~~~i~~d~----~G~l~v~~~~ 153 (326)
T 2ghs_A 92 GSALAKISDSKQ-LIAS--DDGLFLRDTATGVLTLHAE-LES----------DLPGNRSNDGRMHP----SGALWIGTMG 153 (326)
T ss_dssp EEEEEEEETTEE-EEEE--TTEEEEEETTTCCEEEEEC-SST----------TCTTEEEEEEEECT----TSCEEEEEEE
T ss_pred ceEEEEeCCCeE-EEEE--CCCEEEEECCCCcEEEEee-CCC----------CCCCCCCCCEEECC----CCCEEEEeCC
Confidence 677888999985 4443 3459999998877543221 000 01124688999999 8987765542
Q ss_pred C----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC---CC-c-----E
Q psy1242 419 D----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV-SGSQLGPVLVHTT---FG-D-----L 484 (540)
Q Consensus 419 D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-sgs~Dg~v~iw~~---~g-~-----~ 484 (540)
+ ....||.++.. + +..+..+......++|+|+++.++ +.+.++.|.+++. +| . .
T Consensus 154 ~~~~~~~~~l~~~~~g-----------~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~ 221 (326)
T 2ghs_A 154 RKAETGAGSIYHVAKG-----------K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV 221 (326)
T ss_dssp TTCCTTCEEEEEEETT-----------E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred CcCCCCceEEEEEeCC-----------c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence 2 33455554421 1 122223334567899999998664 4455778888764 45 3 2
Q ss_pred EEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEeee-cCCcceec
Q psy1242 485 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHES-HNDNLQKT 539 (540)
Q Consensus 485 ~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~~-~~~~V~~v 539 (540)
...+..... .+..+++.++|.+.++. .++.|..|+++|+.+..+. ....++++
T Consensus 222 ~~~~~~~~~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 222 FIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp EEECTTSSS--EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEE
T ss_pred EEECCCCCC--CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEE
Confidence 233332233 46789999999877664 4689999999998887776 33345554
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.31 E-value=1.3e-05 Score=80.65 Aligned_cols=174 Identities=10% Similarity=0.031 Sum_probs=104.6
Q ss_pred EEEEEEEecCCCEEEEEEec-----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-Cc
Q psy1242 338 RHNCFVTTVDSRFLLACGFW-----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DC 411 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~-----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~ 411 (540)
.+..++++++|+ |+++... ++.|.+||+.+++.+..+...... ..+...+..+++++ + +.
T Consensus 68 ~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------~~~~~~~~~v~vd~----~~g~ 133 (343)
T 2qe8_A 68 TVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------TLSNSFVNDLAVDL----IHNF 133 (343)
T ss_dssp CEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------SCTTCCCCEEEEET----TTTE
T ss_pred EeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------cccccccceEEEec----CCCE
Confidence 367888899987 5666543 578999999999877776321100 12334568899997 5 44
Q ss_pred EEEEEe---CCCcEEEEEcCCCcccccCCC---CCCc-ceEEecc--------------CCCCEEEEEEcCCCCEEEEEe
Q psy1242 412 FIASGS---ADCTVLLWHWNARTQSIVGET---DTPT-PRATLTG--------------HEQPVTSVAISAELGLVVSGS 470 (540)
Q Consensus 412 ~l~sgs---~DgtV~lWd~~~~~~~~~~~~---~~~~-~~~~l~~--------------h~~~V~~v~~spdg~~lasgs 470 (540)
..++.+ .++.|.+||..+......... .... ......+ ....+..|+|+|+++.|+.+.
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 556655 688999999865331110000 0000 0000011 112468899999999888887
Q ss_pred CCCc-EEEEe----CCCcE--------EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEE
Q psy1242 471 QLGP-VLVHT----TFGDL--------LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLR 528 (540)
Q Consensus 471 ~Dg~-v~iw~----~~g~~--------~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~ 528 (540)
.++. +...+ ..+.. +..+ ++.+ .+..++++++|.+.++ ..++.|.+|+. +|+...
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g--~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKP--ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECC--SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCC--CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 7664 32222 11110 0111 1222 3568999999998877 45789999999 786543
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.26 E-value=9.5e-05 Score=72.42 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=81.8
Q ss_pred EEEEEEe----cCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcE
Q psy1242 339 HNCFVTT----VDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCF 412 (540)
Q Consensus 339 ~~~~~~s----pdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~ 412 (540)
...++++ ++++.++++...++.|.+|+.+ +++....- ....+.++. ..+..+++++ +|++
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~----------~~~~~~~~~~~~p~~i~~d~----~G~l 239 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK----------VWGHIPGTHEGGADGMDFDE----DNNL 239 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE----------EEEECCCCSSCEEEEEEEBT----TCCE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce----------EEEECCCCCCCCCCceEECC----CCCE
Confidence 4567889 9997776777778999999986 45422110 011123444 5678899999 8988
Q ss_pred EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q psy1242 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL-VVSGSQLGPVLVHTT 480 (540)
Q Consensus 413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~-lasgs~Dg~v~iw~~ 480 (540)
.++...++.|.+||..+ ++.+..+..+...+.+++++++++. +++...++.|..++.
T Consensus 240 ~v~~~~~~~i~~~d~~~-----------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDG-----------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEETTTEEEEECTTC-----------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCEEEEEcCCC-----------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 88888889999999763 2334555566678999999999994 455555677766644
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.22 E-value=3.6e-05 Score=75.99 Aligned_cols=152 Identities=9% Similarity=0.044 Sum_probs=101.3
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D 419 (540)
...+|+++|+.|++++..++.|..|+. +++ ...+ ..+...+.++++++ +|+++++...+
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~---------------~~~~~~~~gl~~d~----dG~l~v~~~~~ 106 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL---------------LDATAFTNGNAVDA----QQRLVHCEHGR 106 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE---------------EESCSCEEEEEECT----TSCEEEEETTT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE---------------eCCCCccceeeECC----CCCEEEEECCC
Confidence 456789999988889888999999998 455 3344 34566789999999 89877666666
Q ss_pred CcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEeC-
Q psy1242 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVS----GSQ-------------LGPVLVHTT- 480 (540)
Q Consensus 420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~las----gs~-------------Dg~v~iw~~- 480 (540)
+.|.+|+.+. ... .......+. ...+.+++++++|.++++ |.. .+.|..++.
T Consensus 107 ~~v~~~~~~g-~~~--------~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 107 RAITRSDADG-QAH--------LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp TEEEEECTTS-CEE--------EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred CEEEEECCCC-CEE--------EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 8899998642 110 000111111 134667999999998886 332 234555555
Q ss_pred CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-C------CeEEEEecCCc
Q psy1242 481 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R------GHIAAFTMNGN 525 (540)
Q Consensus 481 ~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-d------g~I~lw~~~g~ 525 (540)
+++..... ... .+..++|+|+|+.|+.++ . +.|.+|++++.
T Consensus 178 ~g~~~~~~--~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 178 GSPLQRMA--DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp SCCCEEEE--EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CCcEEEEe--cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 56544333 222 468899999999776643 2 68999998743
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.18 E-value=5.5e-05 Score=76.09 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=101.9
Q ss_pred EEEEEecCCCEEEEEEe---cCCcEEEEEccCCeEEEEEecccceee--------eeeEEEeec------cCcceEEEEe
Q psy1242 340 NCFVTTVDSRFLLACGF---WDNSFRVFSTDNARIVQIIFGHYGVVT--------SRIVQIIFG------HYGVVTCLSR 402 (540)
Q Consensus 340 ~~~~~spdg~~llasgs---~Dgsv~iwd~~~g~~~~~l~~~~~~v~--------~~~~~~l~~------h~~~Vt~l~~ 402 (540)
..+++++++..++++.. .++.|.+||..+++....+.+|..... +........ ....+..|++
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~ 202 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL 202 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe
Confidence 45677877666667766 788999999998887766644321100 000000000 1134688999
Q ss_pred ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcce--EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242 403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR--ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT 480 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~ 480 (540)
+| +|+.|+.+..++. ++|.+....... +.....+.. ....++......++++++|.++++...++.|.+|+.
T Consensus 203 s~----dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 203 DA----ENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CT----TSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred cc----CCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 99 9998888887664 556543210000 000000000 012234445667899999999999999999999998
Q ss_pred -CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242 481 -FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 513 (540)
Q Consensus 481 -~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~ 513 (540)
+|+.......+. ...+.+++|.++|+++++..
T Consensus 277 ~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 277 ADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TTTEEEEEEECGG-GSCEEEEEECTTSCEEEEEC
T ss_pred CCCCEEEEEECCc-eecCCeeEECCCCcEEEEeC
Confidence 887544443321 12578999999998777743
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.15 E-value=2.2e-07 Score=95.18 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=76.5
Q ss_pred cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVTCLSRSECNITADCFIASGSADCTVLL 424 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l 424 (540)
.+++ ++++++.|+.|+.||..+|+.+..+. .+.. .+. .+|.. .++..+++|+.|+++..
T Consensus 47 ~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~---------------~~~~~~~~---~sp~~-~~~~~v~~g~~dg~v~a 106 (369)
T 2hz6_A 47 VEEP-AFLPDPNDGSLYTLGSKNNEGLTKLP---------------FTIPELVQ---ASPCR-SSDGILYMGKKQDIWYV 106 (369)
T ss_dssp ---C-CEEECTTTCCEEEC-----CCSEECS---------------CCHHHHHT---TCSCC------CCCCEEEEEEEE
T ss_pred cCCC-EEEEeCCCCEEEEEECCCCceeeeee---------------ccCccccc---cCceE-ecCCEEEEEeCCCEEEE
Confidence 4565 46777899999999999998766652 1111 110 11110 03446788888999999
Q ss_pred EEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEe
Q psy1242 425 WHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMS 503 (540)
Q Consensus 425 Wd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fs 503 (540)
||..+++ .+-.+..+. .+.++|++..+++++.|+.|+.|+. +|+.+..+..+.. ...+++
T Consensus 107 ~D~~tG~-----------~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~ 167 (369)
T 2hz6_A 107 IDLLTGE-----------KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPE 167 (369)
T ss_dssp ECCC-------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCC
T ss_pred EECCCCc-----------EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCcccc
Confidence 9987633 333333332 2345678888999999999999875 7876554432111 122233
Q ss_pred eC----CCEEEEecCCeEEEEecC-CcEEEeeecCCcc
Q psy1242 504 RE----GVIVVNYERGHIAAFTMN-GNRLRHESHNDNL 536 (540)
Q Consensus 504 pd----g~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V 536 (540)
.+ +.+++++.+|.|..||.+ |+.+-......++
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred CCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence 32 566666778999999985 8877665544443
No 219
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.12 E-value=0.00067 Score=65.22 Aligned_cols=158 Identities=9% Similarity=-0.041 Sum_probs=103.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs 417 (540)
...+++++++..|+++...++.|.+++...+.....+ ........++++++ ++..| ++..
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---------------~~~~~~p~~ia~d~----~~~~lyv~d~ 98 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---------------RQDLGSPEGIALDH----LGRTIFWTDS 98 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---------------CTTCCCEEEEEEET----TTTEEEEEET
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---------------ECCCCCccEEEEEe----cCCeEEEEEC
Confidence 5678889988778888777899999999755443332 22235678999998 65544 5555
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcEEEEec-CCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ---LGPVLVHTTFGDLLRSLD-PPSG 493 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---Dg~v~iw~~~g~~~~~l~-~~~~ 493 (540)
..+.|.+++.+... ..............++++|++..|..+.. .+.|...+.+|.....+. ....
T Consensus 99 ~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~ 167 (267)
T 1npe_A 99 QLDRIEVAKMDGTQ-----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167 (267)
T ss_dssp TTTEEEEEETTSCS-----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred CCCEEEEEEcCCCC-----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence 67899999876421 11112222245689999997665544443 356766666665544442 2222
Q ss_pred CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242 494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR 528 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~ 528 (540)
.+..+++++++..|..+ ..+.|..++++|..+.
T Consensus 168 --~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 168 --LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR 202 (267)
T ss_dssp --CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred --CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence 57899999988766553 4578999999875443
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.09 E-value=0.0001 Score=81.60 Aligned_cols=156 Identities=7% Similarity=0.019 Sum_probs=95.4
Q ss_pred EEEEEEEecCCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 338 RHNCFVTTVDSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.+..++|||||++|+.+.+. ..+|+++|+.+|+.+... +.+ .....++|+ ||+.|
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--------------~~~--~k~~~~~Ws-----Dg~~l 188 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--------------LKD--VKFSGISWL-----GNEGF 188 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--------------EEE--EESCCCEEE-----TTTEE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--------------cCC--ceeccEEEe-----CCCEE
Confidence 35567889999976544433 346999999999865432 011 113466787 57778
Q ss_pred EEEeCCCc-------------EEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEe-CC---CcE
Q psy1242 414 ASGSADCT-------------VLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGS-QL---GPV 475 (540)
Q Consensus 414 ~sgs~Dgt-------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs-~D---g~v 475 (540)
+.++.+.. |.+|++.+.... ..++..... |...+.++.|||||++|+..+ .+ ..|
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGG-------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCccc-------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 77777643 889987663321 122333333 555678999999999775443 22 367
Q ss_pred EEEeC-CCc-EEEEecCCCCCCCceEEEEeeCCCEEEE-ec----CCeEEEEecCC
Q psy1242 476 LVHTT-FGD-LLRSLDPPSGFASPESVVMSREGVIVVN-YE----RGHIAAFTMNG 524 (540)
Q Consensus 476 ~iw~~-~g~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~----dg~I~lw~~~g 524 (540)
++++. ++. ....+..+.. ..... ++++|..|+. +. .+.|..+++++
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~--~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLD--ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEEETTSTTCCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEECCCCCCceEEEeCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 77765 332 3445555544 23444 6777765554 32 36788888874
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.02 E-value=9.3e-05 Score=75.66 Aligned_cols=237 Identities=13% Similarity=0.048 Sum_probs=123.5
Q ss_pred CcceEEEEcCCCCCcccCCCCc----CCCCCCCCCccccCCCCeeeccCCC-CCCccccccCCC-cCcceeeEEEEEEEe
Q psy1242 272 HQFAINRWNPDYAASIQSPSYA----ETPGSPPGNLPLTLDPILTHPTSNN-NAPVPKRHLGDN-FSQKLRVRHNCFVTT 345 (540)
Q Consensus 272 ~D~tv~~W~~~~~~~~~~~~~~----~~v~~~~~~~~~s~D~~l~~~g~~~-~~~~~~~~~~~~-~~~~~~v~~~~~~~s 345 (540)
.+.+|.+||..+.+......-. ..++.....+.+++|+..+..++.. ........+... ....+.+. .|..+.
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g~~~~~ 185 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-DCYHIF 185 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-SEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-Ccceee
Confidence 4678999999876533322110 0112233457788888655443211 111111111100 00011111 122233
Q ss_pred cCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceE-EEEec-cCccCCCcEEEEEeCCCcE
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVT-CLSRS-ECNITADCFIASGSADCTV 422 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt-~l~~s-p~~~~dg~~l~sgs~DgtV 422 (540)
|.|...+++.+.||++.+.++.+ ++.......+ +..-...+. ..+|. + +|++++ .+.+|+|
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~-----------~~~~~~~~~~~~~~~~~----dG~~~~-vs~~g~V 249 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-----------FHPEDEFLINHPAYSQK----AGRLVW-PTYTGKI 249 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-----------CSCTTSCBCSCCEEETT----TTEEEE-EBTTSEE
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecce-----------eccccccccccceeEcC----CCcEEE-EeCCCEE
Confidence 44432355666788887777765 5543221000 000111121 23554 4 675444 5668999
Q ss_pred EEEEcCCCcccccCCCCCCcceEEec------c-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEe-CCCcE
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLT------G-HEQPVTSVAISAELGLVVSGSQ----------LGPVLVHT-TFGDL 484 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~------~-h~~~V~~v~~spdg~~lasgs~----------Dg~v~iw~-~~g~~ 484 (540)
.+.|........ ...+..+. + .......++++++++.+..... ...|.+.+ .+++.
T Consensus 250 ~v~d~~~~~~~v------~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 250 HQIDLSSGDAKF------LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp EEEECTTSSCEE------CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred EEEECCCCccee------ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 999986533111 01111000 0 1112234677999887766542 13465544 48899
Q ss_pred EEEecCCCCCCCceEEEEeeCCC-EEEE--ecCCeEEEEecC-CcEEEeeecCC
Q psy1242 485 LRSLDPPSGFASPESVVMSREGV-IVVN--YERGHIAAFTMN-GNRLRHESHND 534 (540)
Q Consensus 485 ~~~l~~~~~~~~v~~l~fspdg~-~l~s--~~dg~I~lw~~~-g~~l~~~~~~~ 534 (540)
++.+.... .+++|++++||+ .|++ +.++.|.++|.. ++.+++....+
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 98887654 468999999997 5555 347999999986 89988886433
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.98 E-value=0.00011 Score=76.23 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=101.5
Q ss_pred EEEEecCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccc-e---------ee-e--eeEEEeeccCcceE--------
Q psy1242 341 CFVTTVDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYG-V---------VT-S--RIVQIIFGHYGVVT-------- 398 (540)
Q Consensus 341 ~~~~spdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~-~---------v~-~--~~~~~l~~h~~~Vt-------- 398 (540)
.++++|||++++++... +++|.+.|+.+++.+..+..... . +. + ..+..+..-.+.|.
T Consensus 181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~ 260 (426)
T 3c75_H 181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH 260 (426)
T ss_dssp GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence 45789999987666543 68999999999998887743110 0 00 0 00000000011111
Q ss_pred --------EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCC----CCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242 399 --------CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLV 466 (540)
Q Consensus 399 --------~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~----~~~~~~~~~l~~h~~~V~~v~~spdg~~l 466 (540)
.+.+.+ ++..++..+..++|.+.|........... ........... .....++++|+++.+
T Consensus 261 v~~~p~~~~~~~~~----dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p---~g~~~va~s~dg~rl 333 (426)
T 3c75_H 261 TEDELLINHPAFSL----RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP---GGWQQTAYHRQSDRI 333 (426)
T ss_dssp CTTSCBCSCCEECT----TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE---CSSSCEEEEGGGTEE
T ss_pred cCCCceeeEeeecC----CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc---CCceeeEEcCCCCEE
Confidence 123344 55555555556666666654321110000 00000000000 111126889998866
Q ss_pred EEEeC----------CCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCC-EEEEe--cCCeEEEEecC-CcEEEee
Q psy1242 467 VSGSQ----------LGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRHE 530 (540)
Q Consensus 467 asgs~----------Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s~--~dg~I~lw~~~-g~~l~~~ 530 (540)
..... ++.|.+.| .+.+.+.++.... .+.+++|+|||+ .+++. .++.|.++|+. ++.++++
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 55432 34676654 5889998887554 368999999999 77764 47999999987 8888775
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.98 E-value=0.00042 Score=70.71 Aligned_cols=145 Identities=12% Similarity=-0.038 Sum_probs=93.9
Q ss_pred ecCCCEEEEEEe-cCC---cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe---
Q psy1242 345 TVDSRFLLACGF-WDN---SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS--- 417 (540)
Q Consensus 345 spdg~~llasgs-~Dg---sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs--- 417 (540)
.|++++++++.. ..+ +|.++|..+++.+..+ .....+ .++++| ||++++.+.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i---------------~~g~~p--~i~~sp----Dg~~lyv~n~~~ 87 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---------------NGGFLP--NPVAAH----SGSEFALASTSF 87 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEe---------------cCCCCC--CeEECC----CCCEEEEEeccc
Confidence 467776555543 233 8899999999988777 332333 899999 999998875
Q ss_pred -------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Q psy1242 418 -------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHTTF 481 (540)
Q Consensus 418 -------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~ 481 (540)
.+++|.++|..+. +.+..+.-. ...-..++|+|||++|+.++. ++.|.+.+.+
T Consensus 88 ~~~~rg~~~~~v~viD~~t~-----------~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t 156 (373)
T 2mad_H 88 SRIAKGKRTDYVEVFDPVTF-----------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG 156 (373)
T ss_pred cccccCCCCCeEEEEECCCC-----------cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECC
Confidence 3678999998652 233333211 123457899999999988874 4667664477
Q ss_pred CcEEEE-ecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecCCcEE
Q psy1242 482 GDLLRS-LDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNGNRL 527 (540)
Q Consensus 482 g~~~~~-l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~g~~l 527 (540)
++.+.. +.... ++.+.|++. +++...||.+.+++..|+.+
T Consensus 157 ~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~ 199 (373)
T 2mad_H 157 GSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred CCEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence 777777 65322 244556654 23334577777777654444
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.98 E-value=0.00017 Score=73.69 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=84.7
Q ss_pred EecCCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe--
Q psy1242 344 TTVDSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-- 417 (540)
Q Consensus 344 ~spdg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-- 417 (540)
..|+++.++++-.. ++.|.+.|..+++.+..+ .....+ .++++| ||++++.++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---------------~vG~~P--~va~sp----DG~~lyVan~~ 98 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---------------DGGFLP--NPVVAD----DGSFIAHASTV 98 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---------------EECSSC--EEEECT----TSSCEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---------------ECCCCC--cEEECC----CCCEEEEEccc
Confidence 36899987776654 789999999999999888 333334 399999 999887765
Q ss_pred --------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEeC
Q psy1242 418 --------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHTT 480 (540)
Q Consensus 418 --------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~ 480 (540)
.+++|.+||..+ .+.+..+.-. ...-..++++|||++++.+.. ++.|.+++.
T Consensus 99 ~~r~~~G~~~~~VsviD~~t-----------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVT-----------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEETTEEEEEEEEEEECTTT-----------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred ccccccCCCCCEEEEEECCC-----------CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 467899999876 3344444211 123446899999998887764 678877654
Q ss_pred -CCcEEEEecCC
Q psy1242 481 -FGDLLRSLDPP 491 (540)
Q Consensus 481 -~g~~~~~l~~~ 491 (540)
+++.+.++..+
T Consensus 168 ~t~~vv~tI~v~ 179 (386)
T 3sjl_D 168 EGKAFKRMLDVP 179 (386)
T ss_dssp TTTEEEEEEECC
T ss_pred CCCcEEEEEECC
Confidence 88888888653
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.86 E-value=1.8e-06 Score=88.35 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=71.6
Q ss_pred CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426 (540)
Q Consensus 347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd 426 (540)
++.. +++|+.|+.|..||..+|+.+..+ .. +.+.+..+.. ++..+++++.|+.|..||
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~---------------~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTL---------------KE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEE---------------EC--CCSCCCC---------CCEEECTTTCCEEEC-
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEe---------------cC--CCceecceEc----CCCEEEEeCCCCEEEEEE
Confidence 4553 688889999999999999998877 33 3444444445 677788888999999999
Q ss_pred cCCCcccccCCCCCCcceEEeccCCC-CEE-EEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEe
Q psy1242 427 WNARTQSIVGETDTPTPRATLTGHEQ-PVT-SVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMS 503 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~-~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fs 503 (540)
..+++ .+..+..+.. .+. +..+. ++..+++|+.|+.++.|+. +|+.+..+..+.. ..++
T Consensus 66 ~~tG~-----------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~ 127 (369)
T 2hz6_A 66 SKNNE-----------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLS 127 (369)
T ss_dssp ----C-----------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------
T ss_pred CCCCc-----------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------cccc
Confidence 86533 2222221110 000 00111 3456778888999998876 7988877765432 3345
Q ss_pred eCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242 504 REGVIVVN-YERGHIAAFTMN-GNRLRH 529 (540)
Q Consensus 504 pdg~~l~s-~~dg~I~lw~~~-g~~l~~ 529 (540)
|++..|++ +.++.|+.||.. |+.+-.
T Consensus 128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 128 PSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 67776666 457899999985 765433
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.84 E-value=0.00021 Score=72.85 Aligned_cols=73 Identities=7% Similarity=0.034 Sum_probs=52.6
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCE-EEE-e-cCCeEEEEecC
Q psy1242 457 VAISAELGLVVSGSQ---------LGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVI-VVN-Y-ERGHIAAFTMN 523 (540)
Q Consensus 457 v~~spdg~~lasgs~---------Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~-l~s-~-~dg~I~lw~~~ 523 (540)
++++|+++.+..+.. ++.+.+++ .+++.+.++..+. .+.+++|+|||+. +++ . .++.|.++|+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 678999887765432 12344654 5888888877554 3689999999983 444 5 48999999997
Q ss_pred -CcEEEeeec
Q psy1242 524 -GNRLRHESH 532 (540)
Q Consensus 524 -g~~l~~~~~ 532 (540)
++.+.++.-
T Consensus 346 t~kvv~~I~v 355 (368)
T 1mda_H 346 SDQDQSSVEL 355 (368)
T ss_dssp SCEEEEECCC
T ss_pred CCcEEEEEEC
Confidence 777877753
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.78 E-value=0.0021 Score=66.58 Aligned_cols=163 Identities=6% Similarity=-0.038 Sum_probs=103.4
Q ss_pred EEEEEecCCCEEEEEEecC------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcE
Q psy1242 340 NCFVTTVDSRFLLACGFWD------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCF 412 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~D------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~ 412 (540)
..+..+|+| +++++..+ |.|.+.|..+++.+..++. .+.. ..-..+.|+| +++.
T Consensus 141 h~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-------------~~~~~~~~Yd~~~~p----~~~~ 201 (462)
T 2ece_A 141 HTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-------------DRGDQYLAYDFWWNL----PNEV 201 (462)
T ss_dssp EEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS-------------BCTTCCCCCCEEEET----TTTE
T ss_pred cceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc-------------CCCCccccceEEECC----CCCE
Confidence 344557999 44555444 7899999999999888731 1111 1123478899 8998
Q ss_pred EEEEe-------------------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEE--cCCCCEEEEE
Q psy1242 413 IASGS-------------------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAI--SAELGLVVSG 469 (540)
Q Consensus 413 l~sgs-------------------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~--spdg~~lasg 469 (540)
+++.. .+.+|.+||+.+. +.++++.-- ......+.| +|+++++..+
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------KRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------cEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 88885 3789999999762 344555432 123445655 9999987776
Q ss_pred e------CCCcEEEEeC-CCcE--EEEe--cCC--CC------------CCCceEEEEeeCCCEEEEe--cCCeEEEEec
Q psy1242 470 S------QLGPVLVHTT-FGDL--LRSL--DPP--SG------------FASPESVVMSREGVIVVNY--ERGHIAAFTM 522 (540)
Q Consensus 470 s------~Dg~v~iw~~-~g~~--~~~l--~~~--~~------------~~~v~~l~fspdg~~l~s~--~dg~I~lw~~ 522 (540)
+ .+++|.+|.. .|+. ...+ ... .. ...+..|.+|+||++|.++ ..+.|.+|++
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 6 4567766422 2432 1221 110 00 0146789999999999885 4689999998
Q ss_pred C----CcEEEeeec
Q psy1242 523 N----GNRLRHESH 532 (540)
Q Consensus 523 ~----g~~l~~~~~ 532 (540)
. .+++.....
T Consensus 351 ~d~~~~~lv~~I~t 364 (462)
T 2ece_A 351 SNPFKPVLTGKVKL 364 (462)
T ss_dssp SSTTSCEEEEEEEC
T ss_pred cCCCCcEEEEEEEe
Confidence 4 345544443
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.77 E-value=0.0004 Score=68.36 Aligned_cols=149 Identities=17% Similarity=0.091 Sum_probs=102.2
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV 422 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV 422 (540)
...+++. +..|+.++.|..+|.. ++....+ ......+.++...+ +|...+ ++ +.+
T Consensus 143 ~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~d~----~g~l~v-~t--~~l 197 (330)
T 3hxj_A 143 IVSEDGT--IYVGSNDNYLYAINPD-GTEKWRF---------------KTNDAITSAASIGK----DGTIYF-GS--DKV 197 (330)
T ss_dssp EECTTSC--EEEECTTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECT----TCCEEE-ES--SSE
T ss_pred EEcCCCE--EEEEcCCCEEEEECCC-CCEeEEE---------------ecCCCceeeeEEcC----CCEEEE-Ee--CEE
Confidence 4456777 3556678999999998 8777666 33445667777766 676544 44 788
Q ss_pred EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEE
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVM 502 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~f 502 (540)
..+| .. ++.+.........+.++...++|.+ ..++.++.+..++.+++.+..+..... .+.++.+
T Consensus 198 ~~~d-~~-----------g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g~~~~~~~~~~~--~~~~~~~ 262 (330)
T 3hxj_A 198 YAIN-PD-----------GTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDGTEKWRFKTGKR--IESSPVI 262 (330)
T ss_dssp EEEC-TT-----------SCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTSCEEEEEECSSC--CCSCCEE
T ss_pred EEEC-CC-----------CcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCCCEeEEeeCCCC--ccccceE
Confidence 8888 33 2233344444456778888888765 456667777766778888777765544 3456677
Q ss_pred eeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242 503 SREGVIVVNYERGHIAAFTMNGNRLRHES 531 (540)
Q Consensus 503 spdg~~l~s~~dg~I~lw~~~g~~l~~~~ 531 (540)
.++|.+.++..+|.|..++.+|+.+....
T Consensus 263 ~~~g~l~v~t~~ggl~~~d~~g~~~~~~~ 291 (330)
T 3hxj_A 263 GNTDTIYFGSYDGHLYAINPDGTEKWNFE 291 (330)
T ss_dssp CTTSCEEEECTTCEEEEECTTSCEEEEEE
T ss_pred cCCCeEEEecCCCCEEEECCCCcEEEEEE
Confidence 77888777777889999998888877665
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.69 E-value=0.0073 Score=57.77 Aligned_cols=159 Identities=8% Similarity=-0.044 Sum_probs=99.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...+++++++..|+++....+.|.+++.+... ...+. .........++++| ++..|..+..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~--------------~~~~~~P~~i~vd~----~~g~lyv~~~ 141 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF--------------DTGLVNPRGIVTDP----VRGNLYWTDW 141 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE--------------CSSCSSEEEEEEET----TTTEEEEEEC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE--------------ECCCCCccEEEEee----CCCEEEEEEC
Confidence 45678899877777777778899999987432 22220 22224568899999 6666555543
Q ss_pred ---CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcEEEEecCCCC
Q psy1242 419 ---DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTTFGDLLRSLDPPSG 493 (540)
Q Consensus 419 ---DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~~g~~~~~l~~~~~ 493 (540)
.+.|..++++... ...+ .........+++++++..| ++-...+.|.+.+.++.....+.....
T Consensus 142 ~~~~~~I~~~~~dg~~------------~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 209 (267)
T 1npe_A 142 NRDNPKIETSHMDGTN------------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ 209 (267)
T ss_dssp CSSSCEEEEEETTSCC------------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC
T ss_pred CCCCcEEEEEecCCCC------------cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC
Confidence 3678888765421 1222 1223457899999987655 444556778877776654433322222
Q ss_pred CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 494 FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
.+..++.. .+.+.++ ...+.|..++.+ |+.+..+.
T Consensus 210 --~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 210 --YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp --SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred --CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 35677764 3434344 346899999997 78887775
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.61 E-value=0.0025 Score=61.66 Aligned_cols=158 Identities=9% Similarity=0.004 Sum_probs=101.5
Q ss_pred EEEEEecCCCEEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 340 NCFVTTVDSRFLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
.-+++++|+. |+++.+. +++|++.|+.+++.+..+.- ..+ ...-.+++.. +...++.-
T Consensus 24 ~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------~~~-~fgeGi~~~g-----~~lyv~t~ 83 (266)
T 2iwa_A 24 QGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM-------------DDS-YFGEGLTLLN-----EKLYQVVW 83 (266)
T ss_dssp EEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC-------------CTT-CCEEEEEEET-----TEEEEEET
T ss_pred ccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec-------------CCC-cceEEEEEeC-----CEEEEEEe
Confidence 4567788875 5666543 68999999999999887721 121 1222455542 34445555
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC-
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA- 495 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~- 495 (540)
.++.+.++|..+ .+.+.++.--... ...+++||+.++.+..++.|.+.+. +.+.+.++.......
T Consensus 84 ~~~~v~viD~~t-----------~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 84 LKNIGFIYDRRT-----------LSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp TCSEEEEEETTT-----------TEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred cCCEEEEEECCC-----------CcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 689999999876 3455555321111 2345668877766667788877765 778777776432110
Q ss_pred --CceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242 496 --SPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 496 --~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~ 531 (540)
.++.+.|. +|++.+.. .++.|.+.|+. |+.+..+.
T Consensus 151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 25678888 77655543 57899999996 88887775
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.61 E-value=0.0027 Score=61.38 Aligned_cols=144 Identities=6% Similarity=-0.066 Sum_probs=94.9
Q ss_pred CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426 (540)
Q Consensus 347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd 426 (540)
++..|.++.-.++.+.++|..+++.+.++.. + ... ...+++ ||+.++.+..+++|.+.|
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~--------------g-~~~--g~glt~----Dg~~l~vs~gs~~l~viD 132 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTH--------------Q-MKD--GWGLAT----DGKILYGSDGTSILYEID 132 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEEC--------------C-SSS--CCEEEE----CSSSEEEECSSSEEEEEC
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEEC--------------C-CCC--eEEEEE----CCCEEEEECCCCeEEEEE
Confidence 4666777777889999999999999888821 2 011 233556 777777666788999999
Q ss_pred cCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCCC--------
Q psy1242 427 WNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPPS-------- 492 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~~-------- 492 (540)
..+. +.+..+.- +. ..++.+.+. +|.+.+....++.|. |...+++.+..+....
T Consensus 133 ~~t~-----------~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~ 200 (266)
T 2iwa_A 133 PHTF-----------KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDE 200 (266)
T ss_dssp TTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHT
T ss_pred CCCC-----------cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccc
Confidence 7652 23333321 11 236677887 776666555567775 4566999988886431
Q ss_pred ---CCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC
Q psy1242 493 ---GFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN 523 (540)
Q Consensus 493 ---~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~ 523 (540)
....+..|+|+|+++.++. + ..+.|...++.
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 1114689999999886665 4 34677776654
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.57 E-value=0.0023 Score=61.47 Aligned_cols=156 Identities=9% Similarity=0.019 Sum_probs=99.6
Q ss_pred EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-E
Q psy1242 340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-G 416 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-g 416 (540)
..+.++ ++. |+.+++.+| +|+++|+.+|+.+..+. -. .........+ +++.|.. .
T Consensus 46 qGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~---------------l~-~~~FgeGit~----~g~~ly~lt 103 (262)
T 3nol_A 46 EGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE---------------LG-KRYFGEGISD----WKDKIVGLT 103 (262)
T ss_dssp EEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE---------------CC-TTCCEEEEEE----ETTEEEEEE
T ss_pred ceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe---------------cC-CccceeEEEE----eCCEEEEEE
Confidence 445566 564 777877776 89999999999988872 11 2222322333 3344444 4
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA 495 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~ 495 (540)
-.++.+.++|..+ .+.+.++.-.. ....++++++.|+.+..++.|.+.+. +.+.+.++.......
T Consensus 104 w~~~~v~v~D~~t-----------~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 104 WKNGLGFVWNIRN-----------LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp SSSSEEEEEETTT-----------CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE
T ss_pred eeCCEEEEEECcc-----------CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc
Confidence 4688999999876 34556654322 12334457777666666777877765 788888876532111
Q ss_pred ---CceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeec
Q psy1242 496 ---SPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESH 532 (540)
Q Consensus 496 ---~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~ 532 (540)
.++.+.|. +|++.+. ..++.|.+.|+. |+.+..+..
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 23457776 7765554 357899999987 888887753
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.55 E-value=0.0016 Score=63.95 Aligned_cols=145 Identities=16% Similarity=0.094 Sum_probs=101.6
Q ss_pred CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426 (540)
Q Consensus 347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd 426 (540)
++. +..|+.++.|..+|.. |+..... ..+...+.++...+ ++. |..|+.++.+..+|
T Consensus 107 ~~~--l~v~t~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~~~----~g~-l~vgt~~~~l~~~d 163 (330)
T 3hxj_A 107 EDI--LYVTSMDGHLYAINTD-GTEKWRF---------------KTKKAIYATPIVSE----DGT-IYVGSNDNYLYAIN 163 (330)
T ss_dssp TTE--EEEECTTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECT----TSC-EEEECTTSEEEEEC
T ss_pred CCE--EEEEecCCEEEEEcCC-CCEEEEE---------------cCCCceeeeeEEcC----CCE-EEEEcCCCEEEEEC
Confidence 454 4667778999999988 7776555 33444566667766 565 66678889999998
Q ss_pred cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCC
Q psy1242 427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREG 506 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg 506 (540)
.. + +.+..+......+.++...+++.+++. + +.+..++.+|+.+........ .+.+++..++|
T Consensus 164 ~~-g-----------~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d~~g~~~~~~~~~~~--~~~~~~~~~~g 226 (330)
T 3hxj_A 164 PD-G-----------TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAINPDGTEKWNFYAGYW--TVTRPAISEDG 226 (330)
T ss_dssp TT-S-----------CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEECTTSCEEEEECCSSC--CCSCCEECTTS
T ss_pred CC-C-----------CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEECCCCcEEEEEccCCc--ceeceEECCCC
Confidence 65 2 223333334445666777777775544 4 667766788888777765554 57888999999
Q ss_pred CEEEEecCCeEEEEecCCcEEEeee
Q psy1242 507 VIVVNYERGHIAAFTMNGNRLRHES 531 (540)
Q Consensus 507 ~~l~s~~dg~I~lw~~~g~~l~~~~ 531 (540)
.+.++..++.|..++.+|+.+....
T Consensus 227 ~l~v~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 227 TIYVTSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp CEEEEETTTEEEEECTTSCEEEEEE
T ss_pred eEEEEcCCCeEEEECCCCCEeEEee
Confidence 8888777888999998888876665
No 234
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.52 E-value=0.014 Score=57.60 Aligned_cols=163 Identities=11% Similarity=-0.014 Sum_probs=100.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
...++|.+++..|+.+....+.|..+++... .....+ +.........+++++. ++...++
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--------------~~~~~~~p~glavd~~---~~~ly~~ 94 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------------ISRDIQAPDGLAVDWI---HSNIYWT 94 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--------------ECSSCSCCCEEEEETT---TTEEEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--------------EeCCCCCcCEEEEeec---CCeEEEE
Confidence 4567888877777777777889999998751 221222 0222345678888861 3445556
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCcEEEEecCCCC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL--GPVLVHTTFGDLLRSLDPPSG 493 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D--g~v~iw~~~g~~~~~l~~~~~ 493 (540)
-...+.|.+.+.+... ....+.........+++.|.+..|..+... +.|...+.+|.....+....-
T Consensus 95 d~~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~ 163 (316)
T 1ijq_A 95 DSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 163 (316)
T ss_dssp ETTTTEEEEEETTSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred ECCCCEEEEEeCCCCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCC
Confidence 5678899999876421 112222233567899999876655544433 567666677776655532221
Q ss_pred CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242 494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~ 530 (540)
..+..|++++++..|..+ ..+.|..++++|.....+
T Consensus 164 -~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 164 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 157899999987766654 457899999987544433
No 235
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.50 E-value=0.0017 Score=67.23 Aligned_cols=114 Identities=18% Similarity=0.024 Sum_probs=81.8
Q ss_pred cCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe----
Q psy1242 346 VDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS---- 417 (540)
Q Consensus 346 pdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs---- 417 (540)
+++++++++...+ ++|.++|..+++.+..+ .--..+ .++++| ||++|+.+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I---------------~vG~~P--gia~Sp----Dgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT---------------DGGFLP--HPVAAE----DGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------EECSSC--EEEECT----TSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE---------------ECCCCC--ceEECC----CCCEEEEEecccc
Confidence 5777766776644 79999999999999888 322334 899999 999887775
Q ss_pred ------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEe-CC
Q psy1242 418 ------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHT-TF 481 (540)
Q Consensus 418 ------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~-~~ 481 (540)
.++.|.++|..+. +.+..+.-- ......++++|||++++.+.. ++.|.+.+ .+
T Consensus 141 ~~~~G~~~~~VsviD~~t~-----------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTF-----------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp ETTEEEEEEEEEEECTTTC-----------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred ccccCCCCCEEEEEECCCC-----------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 4678999998763 344444211 122346799999999888774 56786654 58
Q ss_pred CcEEEEecCC
Q psy1242 482 GDLLRSLDPP 491 (540)
Q Consensus 482 g~~~~~l~~~ 491 (540)
++.+.++...
T Consensus 210 ~kvv~~I~v~ 219 (426)
T 3c75_H 210 KTFDRMLDVP 219 (426)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEEcC
Confidence 8888888753
No 236
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.48 E-value=0.011 Score=59.31 Aligned_cols=159 Identities=8% Similarity=-0.012 Sum_probs=102.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++|.+....|+.+-...+.|..+++..+.....+ .........+++.+. ++...++-..
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------~~~~~~p~glavd~~---~g~ly~~d~~ 136 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---------------STGLESPGGLAVDWV---HDKLYWTDSG 136 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE---------------eCCCCCccEEEEecC---CCeEEEEcCC
Confidence 4667888877777777777888999998865543333 222345578888872 4555566666
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCcEEEEecCCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQL-GPVLVHTTFGDLLRSLDPPSGFAS 496 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~D-g~v~iw~~~g~~~~~l~~~~~~~~ 496 (540)
.+.|.+.+++... ....+...-.....++++|.+..|... ... +.|...+.+|.....+..... ..
T Consensus 137 ~~~I~~~~~dG~~-----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~-~~ 204 (349)
T 3v64_C 137 TSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL-FW 204 (349)
T ss_dssp TTEEEEEETTSCS-----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC-SC
T ss_pred CCeEEEEcCCCCc-----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC-CC
Confidence 7889999876421 112223334567899999966655444 444 667666677766555533221 25
Q ss_pred ceEEEEeeCCCEEEEe--cCCeEEEEecCCcEE
Q psy1242 497 PESVVMSREGVIVVNY--ERGHIAAFTMNGNRL 527 (540)
Q Consensus 497 v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l 527 (540)
+..|+++|++..|..+ ..+.|..++++|...
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~ 237 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 237 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce
Confidence 7899999877766654 457899999987543
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.47 E-value=0.0075 Score=57.84 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=89.5
Q ss_pred cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW 425 (540)
+++..|.+..-.++.+.++|..+++.+.++.. .+ ....+++ +++.|+.+..++.|.++
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-------------~~-----eG~glt~----dg~~L~~SdGs~~i~~i 151 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-------------DG-----EGWGLTH----NDQYLIMSDGTPVLRFL 151 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEEC-------------SS-----CCCCEEE----CSSCEEECCSSSEEEEE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEEC-------------CC-----CceEEec----CCCEEEEECCCCeEEEE
Confidence 35666777776789999999999999988821 12 1123334 67777666667788888
Q ss_pred EcCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCcEEEEecCCC-------
Q psy1242 426 HWNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPS------- 492 (540)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~i-w~~~g~~~~~l~~~~------- 492 (540)
|..+. +.+..+.- .. ..++.+.+. +|++.+..-.+..|.+ +..+|+.+..+....
T Consensus 152 Dp~T~-----------~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~ 219 (262)
T 3nol_A 152 DPESL-----------TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP 219 (262)
T ss_dssp CTTTC-----------SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred cCCCC-----------eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence 87652 33333321 11 234556665 7766655555667754 556999988876531
Q ss_pred ---CCCCceEEEEeeCCCEEEEecCCeEEEEe
Q psy1242 493 ---GFASPESVVMSREGVIVVNYERGHIAAFT 521 (540)
Q Consensus 493 ---~~~~v~~l~fspdg~~l~s~~dg~I~lw~ 521 (540)
.....+.||++|+++.|...+..-=++|.
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 01146889999988877664444333443
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.0042 Score=64.29 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=99.9
Q ss_pred cCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC--
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-- 419 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-- 419 (540)
+++++|++.|..+++|.|+|+.+. +..++++.. .+..+ .+ ...-..+...| +| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~~~-----~g-~s~Ph~~~~~p----dG-i~Vs~~g~~~ 159 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVKKV-----SG-YSRLHTVHCGP----DA-IYISALGNEE 159 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHHHH-----HC-EEEEEEEEECS----SC-EEEEEEEETT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcccc-----cC-CCcccceeECC----Ce-EEEEcCCCcC
Confidence 789999999999999999999754 555555200 00000 01 11234566778 88 66666555
Q ss_pred ----CcEEEEEcCCCcccccCCCCCCcceEEecc--CC-CCEEEEEEcCCCCEEEEEe-------------------CCC
Q psy1242 420 ----CTVLLWHWNARTQSIVGETDTPTPRATLTG--HE-QPVTSVAISAELGLVVSGS-------------------QLG 473 (540)
Q Consensus 420 ----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~-~~V~~v~~spdg~~lasgs-------------------~Dg 473 (540)
+.|.+.|..+ .+.+..+.. .. ..-..+.|+|+++.+++.. .+.
T Consensus 160 g~~~g~v~vlD~~T-----------~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d 228 (462)
T 2ece_A 160 GEGPGGILMLDHYS-----------FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN 228 (462)
T ss_dssp SCSCCEEEEECTTT-----------CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred CCCCCeEEEEECCC-----------CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence 7899999775 344555531 11 1223578899999888885 367
Q ss_pred cEEEEeC-CCcEEEEecCCCCCCCceEEEE--eeCCCEEEE--e-----cCCeEEEEecC
Q psy1242 474 PVLVHTT-FGDLLRSLDPPSGFASPESVVM--SREGVIVVN--Y-----ERGHIAAFTMN 523 (540)
Q Consensus 474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~f--spdg~~l~s--~-----~dg~I~lw~~~ 523 (540)
+|.+|+. +++.+.++........+..+.| +|+|+++.. . .+++|.+|..+
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 8999976 6777888876421113456666 999997765 3 45688777655
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.40 E-value=0.0076 Score=66.56 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=104.5
Q ss_pred EEEEecCCCEEEEEEecCC-------------------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242 341 CFVTTVDSRFLLACGFWDN-------------------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dg-------------------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~ 401 (540)
..++.|++.. +..+..++ +|..+|.++|+.+..+......... ......+....
T Consensus 239 ~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd------~~~~~~~~l~d 311 (689)
T 1yiq_A 239 SFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD------YTATQHMILAE 311 (689)
T ss_dssp CEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC------CCCCSCEEEEE
T ss_pred ceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc------ccCCCCcEEEe
Confidence 3566788774 66776665 4999999999998777321000000 00111222223
Q ss_pred eccCccCCCc---EEEEEeCCCcEEEEEcCCCcccccCC--C---------CCCcce---------------EEec---c
Q psy1242 402 RSECNITADC---FIASGSADCTVLLWHWNARTQSIVGE--T---------DTPTPR---------------ATLT---G 449 (540)
Q Consensus 402 ~sp~~~~dg~---~l~sgs~DgtV~lWd~~~~~~~~~~~--~---------~~~~~~---------------~~l~---~ 449 (540)
... +|+ .++.++.+|.+.++|..+++...... . ..+.++ .... |
T Consensus 312 ~~~----~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 312 LPI----DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEE----TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred ecc----CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 333 554 78889999999999987643210000 0 000000 0000 0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEeC-CCc
Q psy1242 450 HEQPVTSVAISAELGLVVSGSQ---------------------------------------------LGPVLVHTT-FGD 483 (540)
Q Consensus 450 h~~~V~~v~~spdg~~lasgs~---------------------------------------------Dg~v~iw~~-~g~ 483 (540)
.. .-..++++|+..++++.+. +|.|..|+. +|+
T Consensus 388 g~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 388 AH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SS-CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cc-CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00 0123688898887776532 366777876 899
Q ss_pred EEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242 484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN 533 (540)
Q Consensus 484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~ 533 (540)
.+.++..+.. +..-.++..|.+|+.+ .||.++.||.+ |+.|-++...
T Consensus 467 ~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 467 AAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 8888766542 3344666777777775 58999999987 9998877643
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.35 E-value=0.0069 Score=66.79 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=105.1
Q ss_pred EEEEecCCCEEEEEEecCC-------------------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242 341 CFVTTVDSRFLLACGFWDN-------------------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dg-------------------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~ 401 (540)
.+++.+++.. +..+..++ +|..+|..+|+.+..++....... .+. .......+.
T Consensus 247 ~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w-----d~~-~~~~p~l~~ 319 (677)
T 1kb0_A 247 SMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW-----DYT-STQPMILAD 319 (677)
T ss_dssp CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-----CCC-CCSCCEEEE
T ss_pred ceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc-----ccc-cCCCcEEEe
Confidence 3566788875 45555443 599999999998877632100000 000 011222333
Q ss_pred eccCccCCC---cEEEEEeCCCcEEEEEcCCCcccccCC--C--------CCCcceE------------Eec---cCCCC
Q psy1242 402 RSECNITAD---CFIASGSADCTVLLWHWNARTQSIVGE--T--------DTPTPRA------------TLT---GHEQP 453 (540)
Q Consensus 402 ~sp~~~~dg---~~l~sgs~DgtV~lWd~~~~~~~~~~~--~--------~~~~~~~------------~l~---~h~~~ 453 (540)
... +| ..++.++.+|.+.++|..+++...... . ..+.++. .+. |...
T Consensus 320 ~~~----dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~- 394 (677)
T 1kb0_A 320 IKI----AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN- 394 (677)
T ss_dssp EEE----TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-
T ss_pred ccc----CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-
Confidence 444 66 678999999999999987643211000 0 0000000 000 0000
Q ss_pred EEEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEeC-CCcEEEEec
Q psy1242 454 VTSVAISAELGLVVSGSQL-------------------------------------------GPVLVHTT-FGDLLRSLD 489 (540)
Q Consensus 454 V~~v~~spdg~~lasgs~D-------------------------------------------g~v~iw~~-~g~~~~~l~ 489 (540)
-..++++|+..++++.+.+ |.|..|+. +|+.+..+.
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 0257889998888776432 66777765 898887776
Q ss_pred CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242 490 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN 533 (540)
Q Consensus 490 ~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~ 533 (540)
... ++....++.+|..++.+ .+|.+++||.. |+.+-++...
T Consensus 475 ~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 475 HVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp ESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 433 34555677777777765 58999999986 9998887633
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.33 E-value=0.028 Score=53.91 Aligned_cols=133 Identities=8% Similarity=0.006 Sum_probs=86.0
Q ss_pred ecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242 345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLL 424 (540)
Q Consensus 345 spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l 424 (540)
++++..|.+..-.++.+.++|.++++.+.++.. .++ + ..++ + +++.|+.+..++.|.+
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-------------~~e-G--wGLt--~----Dg~~L~vSdGs~~l~~ 159 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY-------------SGE-G--WGLC--Y----WNGKLVRSDGGTMLTF 159 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEEEEEEEC-------------SSC-C--CCEE--E----ETTEEEEECSSSEEEE
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC-------------CCc-e--eEEe--c----CCCEEEEECCCCEEEE
Confidence 345666777777899999999999999998831 121 1 2333 4 6777777777889999
Q ss_pred EEcCCCcccccCCCCCCcceEEec--cCC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCC-------
Q psy1242 425 WHWNARTQSIVGETDTPTPRATLT--GHE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPP------- 491 (540)
Q Consensus 425 Wd~~~~~~~~~~~~~~~~~~~~l~--~h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~------- 491 (540)
+|..+. +.+..+. .+. ..++.+.|. +|++.|..-.+..|. |...+|+.+..+...
T Consensus 160 iDp~T~-----------~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~ 227 (268)
T 3nok_A 160 HEPDGF-----------ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA 227 (268)
T ss_dssp ECTTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT
T ss_pred EcCCCC-----------eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc
Confidence 987652 3333332 122 234667776 776665554566664 455699998877642
Q ss_pred ----CCCCCceEEEEeeCCCEEEE
Q psy1242 492 ----SGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 492 ----~~~~~v~~l~fspdg~~l~s 511 (540)
......+.||++|+++.|..
T Consensus 228 ~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 228 GQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp TTCCCTTCCEEEEEECTTTCCEEE
T ss_pred ccccCcCCceEEEEEcCCCCEEEE
Confidence 11114689999998665554
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.32 E-value=0.0064 Score=58.40 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=97.0
Q ss_pred CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242 348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW 427 (540)
Q Consensus 348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~ 427 (540)
+..|+.+.+.+|.|+++|+++|+.+..+ - ... ..--.++... ++..+..-.++.+.++|.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------------~~~-~FgeGit~~g-----~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-R-------------LGN-IFAEGLASDG-----ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-E-------------CTT-CCEEEEEECS-----SCEEEEESSSCEEEEEET
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-------------CCC-cceeEEEEeC-----CEEEEEEccCCEEEEEEC
Confidence 4568889989999999999999887654 1 211 1112344432 344444557899999998
Q ss_pred CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC---CceEEEEe
Q psy1242 428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA---SPESVVMS 503 (540)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~---~v~~l~fs 503 (540)
.+ .+.+.++.--. . ...++++++.|+.+..++.|.+.+. +.+.+.++....... .++.+.|.
T Consensus 124 ~T-----------l~~~~ti~~~~-e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 124 MP-----------PQRERTTRYSG-E--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp TT-----------TEEEEEEECSS-C--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred Cc-----------CcEEEEEeCCC-c--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 76 34555554321 1 1233357787777777888887764 788888776533211 23567776
Q ss_pred eCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 504 REGVIVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 504 pdg~~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
+|++.+. ..++.|.+.|+. |+.+..+.
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 7765554 357899999987 88888775
No 243
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.30 E-value=0.018 Score=58.67 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=100.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++|.+.+..|+.+-...+.|..++.+.+.....+ .........+++++. .+.+.++-..
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------~~~~~~p~glavd~~---~g~lY~~d~~ 179 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---------------STGLESPGGLAVDWV---HDKLYWTDSG 179 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE---------------CSSCSCCCCEEEETT---TTEEEEEETT
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE---------------eCCCCCccEEEEEeC---CCeEEEEcCC
Confidence 4567888877777777777889999998865543333 222334567888872 3455556566
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCcEEEEecCCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QL-GPVLVHTTFGDLLRSLDPPSGFAS 496 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~D-g~v~iw~~~g~~~~~l~~~~~~~~ 496 (540)
.+.|.+.+++... ....+...-.....+++.|.+..|.... .. +.|...+.+|.....+....- ..
T Consensus 180 ~~~I~~~~~dg~~-----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~-~~ 247 (386)
T 3v65_B 180 TSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL-FW 247 (386)
T ss_dssp TTEEEECBTTSCS-----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-SC
T ss_pred CCeEEEEeCCCCc-----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC-CC
Confidence 7788887765421 1222233345678999998766555444 33 566666666665544432211 14
Q ss_pred ceEEEEeeCCCEEEEe--cCCeEEEEecCCcEE
Q psy1242 497 PESVVMSREGVIVVNY--ERGHIAAFTMNGNRL 527 (540)
Q Consensus 497 v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l 527 (540)
+..|+|+|++..|..+ ..+.|..++++|...
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence 7899999877766654 457899999887543
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.30 E-value=0.0028 Score=67.76 Aligned_cols=145 Identities=11% Similarity=-0.005 Sum_probs=98.2
Q ss_pred cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe-c-cCccCCCcEEEEEe------
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR-S-ECNITADCFIASGS------ 417 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~-s-p~~~~dg~~l~sgs------ 417 (540)
+||++++++...++.|.+.|+.+.++.+.++- . .......+++ + | ++++++.++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------------p-~g~~phg~~~~~~p----~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------------P-NAKGIHGLRPQKWP----RSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------------S-SCCSEEEEEECCSS----BCSEEEEEECSCEES
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------------C-CCCCCcceeeeecC----CCcEEEEeccccccc
Confidence 48999888888888899999999998875510 1 2234667787 5 8 888988885
Q ss_pred ------------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC------------
Q psy1242 418 ------------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG------------ 473 (540)
Q Consensus 418 ------------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg------------ 473 (540)
.++.+.+.|..+. +.+.++.--. .-..++++|+|+++++.+.+.
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~-----------~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~ 228 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKW-----------EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA 228 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTT-----------EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC
T ss_pred CCCCcccccccccCceEEEEECCCC-----------eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccc
Confidence 2457888887652 3333332111 234577899999988888553
Q ss_pred --------------------------cEEEEe-CC--CcE-EEEecCCCCCCCceEEEEeeCCCEEEEec--CCeEEEEe
Q psy1242 474 --------------------------PVLVHT-TF--GDL-LRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFT 521 (540)
Q Consensus 474 --------------------------~v~iw~-~~--g~~-~~~l~~~~~~~~v~~l~fspdg~~l~s~~--dg~I~lw~ 521 (540)
.|.|-+ .+ ++. ++.+.... .+.++.++|||+++++++ +.+|.++|
T Consensus 229 ~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 229 EMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp SEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 233322 22 333 44554433 357899999999888753 68899999
Q ss_pred cC
Q psy1242 522 MN 523 (540)
Q Consensus 522 ~~ 523 (540)
++
T Consensus 306 ~~ 307 (595)
T 1fwx_A 306 VT 307 (595)
T ss_dssp GG
T ss_pred Cc
Confidence 87
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.22 E-value=0.0077 Score=59.41 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=92.1
Q ss_pred EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-eeeE----EEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-SRIV----QIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-~~~~----~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
++++.++|+. +.++..++.|..|+..+++.. .+......-. ..+. .........+.++++.+ ++..|+.
T Consensus 23 ~i~~d~~g~~-l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~----~~g~l~v 96 (322)
T 2fp8_A 23 SFTFDSTNKG-FYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL----QNNQLYI 96 (322)
T ss_dssp CEECCTTCSS-EEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET----TTTEEEE
T ss_pred EEEEcCCCCE-EEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC----CCCcEEE
Confidence 4567888883 567778899999998765533 2310000000 0000 00001123578899986 3445555
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceE-Eecc-CCCCEEEEEEcC-CCCEEEEEeC-----------------CCcE
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRA-TLTG-HEQPVTSVAISA-ELGLVVSGSQ-----------------LGPV 475 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~v~~sp-dg~~lasgs~-----------------Dg~v 475 (540)
+...+.+..+|..+... +.+. ...+ .......+++.+ +|.+.++-.. +|.|
T Consensus 97 ~d~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA---------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp EETTTEEEEECTTCEEC---------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred EECCCCEEEEeCCCCEE---------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 55555677777553211 0110 1111 123467899999 9987776543 3556
Q ss_pred EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242 476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG 524 (540)
Q Consensus 476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g 524 (540)
..++. +++....... .. .+..|+++++|+.|+.+ ..+.|..|++++
T Consensus 168 ~~~d~~~~~~~~~~~~-~~--~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKE-LH--VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEETTTTEEEEEEEE-ES--CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEeCCCCEEEEeccC-Cc--cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 66665 3443222221 11 35789999999866554 357899999875
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.21 E-value=0.025 Score=55.72 Aligned_cols=155 Identities=10% Similarity=0.115 Sum_probs=95.7
Q ss_pred EEEEEEec-CCCEEEEEEec-----------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEE
Q psy1242 339 HNCFVTTV-DSRFLLACGFW-----------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCL 400 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~-----------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l 400 (540)
...+++.+ +|+ +.++... ++.|..+|..+++..... ........|
T Consensus 128 p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----------------~~~~~p~gi 190 (322)
T 2fp8_A 128 LYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL----------------KELHVPGGA 190 (322)
T ss_dssp EEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE----------------EEESCCCEE
T ss_pred cceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec----------------cCCccCcce
Confidence 46678889 898 4454322 366888887766643222 112345679
Q ss_pred EeccCccCCCcEEEEE-eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--------
Q psy1242 401 SRSECNITADCFIASG-SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-------- 471 (540)
Q Consensus 401 ~~sp~~~~dg~~l~sg-s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-------- 471 (540)
+++| +|+.|..+ +..+.|.++++..... +. ...+....+ ...+++.++|.+.++...
T Consensus 191 a~~~----dg~~lyv~d~~~~~I~~~~~~~~~~--------~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 191 EVSA----DSSFVLVAEFLSHQIVKYWLEGPKK--------GT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EECT----TSSEEEEEEGGGTEEEEEESSSTTT--------TC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred EECC----CCCEEEEEeCCCCeEEEEECCCCcC--------Cc-cceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 9999 88865544 5678999998764210 11 111111223 778999999987776654
Q ss_pred --CCcEEEEeCCCcEEEEecCCCC--CCCceEEEEeeCCCEEEEe-cCCeEEEEecCCc
Q psy1242 472 --LGPVLVHTTFGDLLRSLDPPSG--FASPESVVMSREGVIVVNY-ERGHIAAFTMNGN 525 (540)
Q Consensus 472 --Dg~v~iw~~~g~~~~~l~~~~~--~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~ 525 (540)
.+.|..++.+|+.+..+..+.+ ...+.++++ .+|++.++. ..+.|..+++..+
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 3556667788998888876542 114667776 466655553 5678998887644
No 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.18 E-value=0.02 Score=57.60 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=83.5
Q ss_pred EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242 352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART 431 (540)
Q Consensus 352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~ 431 (540)
+..++.++.+..+|..+|+.+... . .....++.. ++..+..++.++.+..+|..++.
T Consensus 242 v~~~~~~g~l~~~d~~tG~~~w~~---------------~--~~~~~~~~~------~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQIMWKR---------------E--LGSVNDFIV------DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEE---------------C--CCCEEEEEE------ETTEEEEEETTCCEEEEETTTCC
T ss_pred EEEEecCcEEEEEECCCCcEEeec---------------c--CCCCCCceE------ECCEEEEEcCCCeEEEEECCCCc
Confidence 456667899999999999887655 1 122334443 34577788889999999987632
Q ss_pred ccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242 432 QSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIV 509 (540)
Q Consensus 432 ~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l 509 (540)
.+-... .....+..... .+..|+.++.+|.+.+++ .+|+.+........ .+.+.....++.++
T Consensus 299 -----------~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~~~~~l~ 363 (376)
T 3q7m_A 299 -----------TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVAADGKLL 363 (376)
T ss_dssp -----------EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEEETTEEE
T ss_pred -----------EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEEECCEEE
Confidence 222222 11112222222 246788889999998876 48998877765433 22222222466666
Q ss_pred EEecCCeEEEEe
Q psy1242 510 VNYERGHIAAFT 521 (540)
Q Consensus 510 ~s~~dg~I~lw~ 521 (540)
+...+|.|+.|+
T Consensus 364 v~~~~G~l~~~~ 375 (376)
T 3q7m_A 364 IQAKDGTVYSIT 375 (376)
T ss_dssp EEBTTSCEEEEE
T ss_pred EEeCCCEEEEEe
Confidence 667788998886
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.16 E-value=0.0021 Score=68.73 Aligned_cols=128 Identities=9% Similarity=-0.043 Sum_probs=78.5
Q ss_pred ceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy1242 396 VVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPT-PRATLTGHEQPVTSVAISAELGLVVSGSQLG 473 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg 473 (540)
...++.++| ||++++.++ .+.+|.++|+.+......++-.... ....+ .-......++|+++|...++.--|+
T Consensus 278 ~PhGv~~sP----DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~lds 352 (595)
T 1fwx_A 278 NPHGCNMAP----DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDS 352 (595)
T ss_dssp SCCCEEECT----TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTT
T ss_pred CceEEEEcC----CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCC
Confidence 456789999 999876665 6889999998853100000000001 11222 2234577899999995455666799
Q ss_pred cEEEEeC-C----------CcEEEEecCCCCC---CCceEEEEeeCCCEEEEe---cCCeE-----------EEEecCCc
Q psy1242 474 PVLVHTT-F----------GDLLRSLDPPSGF---ASPESVVMSREGVIVVNY---ERGHI-----------AAFTMNGN 525 (540)
Q Consensus 474 ~v~iw~~-~----------g~~~~~l~~~~~~---~~v~~l~fspdg~~l~s~---~dg~I-----------~lw~~~g~ 525 (540)
.|.+|+. + .+.+.++..|-.. .....+.++|||++|+++ +..++ .++|+.|.
T Consensus 353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred cEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 9988965 3 4567777665320 001233557999999985 32333 78999865
Q ss_pred EEE
Q psy1242 526 RLR 528 (540)
Q Consensus 526 ~l~ 528 (540)
.+.
T Consensus 433 ~m~ 435 (595)
T 1fwx_A 433 KMV 435 (595)
T ss_dssp SCE
T ss_pred cEE
Confidence 433
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.14 E-value=0.0067 Score=67.71 Aligned_cols=153 Identities=9% Similarity=-0.035 Sum_probs=85.9
Q ss_pred EEEEEEe-cCCCEEEEEEecCC----cEEEEEccCC-eEEE-EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 339 HNCFVTT-VDSRFLLACGFWDN----SFRVFSTDNA-RIVQ-IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 339 ~~~~~~s-pdg~~llasgs~Dg----sv~iwd~~~g-~~~~-~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
...++|| |||++|+.+.+.+| +|+++|+.+| +.+. .+ . .....++|+| ||+
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------------~---~~~~~~~Wsp----Dg~ 233 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------------S---GTNGEIVWGP----DHT 233 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------------E---EECSCCEECS----STT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------------c---CceeeEEEec----CCC
Confidence 5567889 99997655544444 4999999988 6321 11 1 1235689999 998
Q ss_pred EEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEeC-C
Q psy1242 412 FIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQL-GP--VLVHTT-F 481 (540)
Q Consensus 412 ~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~D-g~--v~iw~~-~ 481 (540)
.|+..+.|. .|.++++.+... +....+. ........+.|||||++|+..+.+ +. |.+++. +
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~---------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQS---------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGG---------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEEEEECCCCCCCEEEEEECCCCch---------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 887776652 466666654221 1122222 223456788999999987765533 23 444454 3
Q ss_pred C--cE-EEEecCCCCCCCceEEEEeeCCCEEEEecC-----CeEEEEecC
Q psy1242 482 G--DL-LRSLDPPSGFASPESVVMSREGVIVVNYER-----GHIAAFTMN 523 (540)
Q Consensus 482 g--~~-~~~l~~~~~~~~v~~l~fspdg~~l~s~~d-----g~I~lw~~~ 523 (540)
+ +. ++.+...... ...++.|+..+.+++.+.. ..|..++++
T Consensus 305 ~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp CTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 2 23 1444332221 3455555443444444322 357777776
No 250
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.015 Score=60.39 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=91.9
Q ss_pred EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
...++++| ++..|+++-.. +.|+.+|..+++..... ........|++++ +|++|+.+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~----------------~~~~~P~~ia~d~----~G~~lyvad 197 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY----------------SGLSKVRTICWTH----EADSMIITN 197 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE----------------CCCSCEEEEEECT----TSSEEEEEE
T ss_pred CCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe----------------cCCCCcceEEEeC----CCCEEEEEe
Confidence 35667787 34545555443 88999999866644333 2345678999999 898665555
Q ss_pred C-CC----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcEE-EEecC
Q psy1242 418 A-DC----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTTFGDLL-RSLDP 490 (540)
Q Consensus 418 ~-Dg----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~~g~~~-~~l~~ 490 (540)
. ++ .+.+.+... . ......+.. .....+++++| ++.++++-..++.|..++..+..+ .....
T Consensus 198 ~~~~~~~~~v~~~~~~g-~---------~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRES-G---------FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp CCSCTTSEEEEEEEGGG-T---------SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCcccceEEEEeCCC-c---------eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 4 22 233333221 1 011122221 22345788999 677777766778887777654443 22222
Q ss_pred CCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242 491 PSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG 524 (540)
Q Consensus 491 ~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g 524 (540)
... ..+..++|+|+|++|... ..++|..++.++
T Consensus 267 ~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDS-GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCC-CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 221 146899999999955543 468899988775
No 251
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.13 E-value=0.063 Score=54.97 Aligned_cols=162 Identities=11% Similarity=-0.011 Sum_probs=101.0
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
...++|.+.+..|+.+-...+.|+.+++.... ....+ .........|++.+. .+++.+
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---------------~~~~~~p~glavD~~---~~~lY~ 175 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDWI---HSNIYW 175 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---------------CSSCSCEEEEEEETT---TTEEEE
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---------------eCCCCCcccEEEEec---CCceEE
Confidence 56778888777677776677888888876421 22222 223456778888872 345555
Q ss_pred EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCC
Q psy1242 415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPS 492 (540)
Q Consensus 415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~ 492 (540)
+-...+.|.+.+++... ....+...-.....|++.|.+..|..... .+.|...+.+|.....+....
T Consensus 176 ~d~~~~~I~~~~~~g~~-----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 176 TDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp EETTTTEEEEECTTTCS-----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred EECCCCeEEEEeCCCCc-----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 65667888888876421 12222333445789999997665554442 356766677776555443222
Q ss_pred CCCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242 493 GFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 493 ~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~ 530 (540)
- ..+..|++++++..|..+ ..+.|..++++|.....+
T Consensus 245 l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 245 I-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp C-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred C-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 1 157899999887777664 357899999987654433
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.10 E-value=0.055 Score=51.80 Aligned_cols=167 Identities=10% Similarity=0.044 Sum_probs=107.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++++|++..|+++...++.|...|.+ |+.+..+. +.+ ....-.|++.+ ++.++++.-.
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------l~g-~~D~EGIa~~~----~g~~~vs~E~ 89 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------LDF-VKDLETIEYIG----DNQFVISDER 89 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-------------CSS-CSSEEEEEECS----TTEEEEEETT
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-------------cCC-CCChHHeEEeC----CCEEEEEECC
Confidence 56678899888788888888999999998 88887762 122 24566778877 8877777667
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEe------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--e--CCCcEEEEe
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATL------TGHEQPVTSVAISAELGLVVSGSQLGPVLVH--T--TFGDLLRSL 488 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l------~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw--~--~~g~~~~~l 488 (540)
++.+.++++...... ..+... .........++++|.++.|.++...+...|| + ..+..+..+
T Consensus 90 ~~~l~~~~v~~~~~i--------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~ 161 (255)
T 3qqz_A 90 DYAIYVISLTPNSEV--------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS 161 (255)
T ss_dssp TTEEEEEEECTTCCE--------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred CCcEEEEEcCCCCee--------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence 788988887653210 011111 1234457899999999777666665555554 3 122122222
Q ss_pred cC-----CCCCCCceEEEEeeCCC-EEEEe-cCCeEEEEecCCcEEEeeec
Q psy1242 489 DP-----PSGFASPESVVMSREGV-IVVNY-ERGHIAAFTMNGNRLRHESH 532 (540)
Q Consensus 489 ~~-----~~~~~~v~~l~fspdg~-~l~s~-~dg~I~lw~~~g~~l~~~~~ 532 (540)
.. ...-..+.++++.|... +++.+ ....|..+|.+|+.+..+..
T Consensus 162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L 212 (255)
T 3qqz_A 162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSL 212 (255)
T ss_dssp ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEEC
T ss_pred cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEc
Confidence 11 01111468999998754 44444 45789999999998877763
No 253
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.10 E-value=0.0077 Score=66.38 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=92.4
Q ss_pred ecCCC--EEEEEEecCCcEEEEEccCCeEEEEEecccce-e-----eeeeEE------------EeeccCcc--eEEEEe
Q psy1242 345 TVDSR--FLLACGFWDNSFRVFSTDNARIVQIIFGHYGV-V-----TSRIVQ------------IIFGHYGV--VTCLSR 402 (540)
Q Consensus 345 spdg~--~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~-v-----~~~~~~------------~l~~h~~~--Vt~l~~ 402 (540)
..+|+ .+++.++.+|.|.++|..+|+.+..++..... . .++.+. .+.+..+. =..+++
T Consensus 321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~ 400 (677)
T 1kb0_A 321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF 400 (677)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence 34773 46789999999999999999998776422100 0 000000 00000000 025678
Q ss_pred ccCccCCCcEEEEEeCC-------------------------------------------CcEEEEEcCCCcccccCCCC
Q psy1242 403 SECNITADCFIASGSAD-------------------------------------------CTVLLWHWNARTQSIVGETD 439 (540)
Q Consensus 403 sp~~~~dg~~l~sgs~D-------------------------------------------gtV~lWd~~~~~~~~~~~~~ 439 (540)
+| ++.++++...+ +.|..||+.++
T Consensus 401 dp----~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG--------- 467 (677)
T 1kb0_A 401 NP----QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ--------- 467 (677)
T ss_dssp ET----TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------
T ss_pred cC----CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------
Confidence 88 77777665432 67888887663
Q ss_pred CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 440 TPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 440 ~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
+.+-.+. +...+.+..+..++.+++.++.||.+++++. +|+.+.++..+.+. ...-+.+..+|+..+.
T Consensus 468 --~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 468 --KAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV-VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp --EEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred --cEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc-ccCCEEEEeCCEEEEE
Confidence 2222222 2233444556677888999999999999875 89999998866542 2345677789975443
No 254
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.06 E-value=0.0031 Score=64.13 Aligned_cols=108 Identities=9% Similarity=-0.168 Sum_probs=75.4
Q ss_pred CEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-------
Q psy1242 349 RFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS------- 417 (540)
Q Consensus 349 ~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs------- 417 (540)
.+++++...++ +|.+.|..+++.+.++ .....+ .++++| ||++++.+.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i---------------~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS---------------LGAFLS--LAVAGH----SGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------EECTTC--EEEECT----TSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEE---------------eCCCCC--ceEECC----CCCEEEEEcccccccc
Confidence 34556665555 7889999999999888 333334 799999 999888876
Q ss_pred ---CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEE--EeCCCc
Q psy1242 418 ---ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLV--HTTFGD 483 (540)
Q Consensus 418 ---~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~i--w~~~g~ 483 (540)
.+++|.+||..+ .+.+..+.-. ......++++|||++++.+.. +..+.+ ++...
T Consensus 91 ~G~~~~~VsviD~~T-----------~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t- 158 (368)
T 1mda_H 91 KGKRTDYVEVFDPVT-----------FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD- 158 (368)
T ss_dssp SSSEEEEEEEECTTT-----------CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-
T ss_pred cCCCCCEEEEEECCC-----------CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-
Confidence 478999999877 3455665422 122446899999999888875 356777 55422
Q ss_pred EEEEecC
Q psy1242 484 LLRSLDP 490 (540)
Q Consensus 484 ~~~~l~~ 490 (540)
+.++..
T Consensus 159 -v~~i~v 164 (368)
T 1mda_H 159 -DQLTKS 164 (368)
T ss_dssp -EEEEEC
T ss_pred -ceEEEC
Confidence 555543
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.04 E-value=0.05 Score=51.57 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=96.9
Q ss_pred EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
.-+.|+. + .|+.+.+.+| +|+++|+.+|+.+..+.. ..+. .--.++.. +++..+..-
T Consensus 24 qGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------------~~~~-fgeGi~~~-----~~~ly~ltw 82 (243)
T 3mbr_X 24 EGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEV-------------PPPY-FGAGIVAW-----RDRLIQLTW 82 (243)
T ss_dssp EEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEEC-------------CTTC-CEEEEEEE-----TTEEEEEES
T ss_pred ccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeC-------------CCCc-ceeEEEEe-----CCEEEEEEe
Confidence 3445554 4 4677776654 899999999999887721 1111 11223332 234444455
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC-
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA- 495 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~- 495 (540)
.++.+.++|..+ .+.+.++...... ..++++++.|+.+..++.|.+.+. +.+.++++.......
T Consensus 83 ~~~~v~v~D~~t-----------l~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 83 RNHEGFVYDLAT-----------LTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp SSSEEEEEETTT-----------TEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred eCCEEEEEECCc-----------CcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 789999999876 3455665432222 233456776666666888887765 788888776533211
Q ss_pred --CceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 496 --SPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 496 --~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
.++.+.+. +|++.+. ..+..|.+.|+. |+.+..+.
T Consensus 149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 23456654 6765554 357899999987 88888775
No 256
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.03 E-value=0.062 Score=53.19 Aligned_cols=160 Identities=7% Similarity=-0.004 Sum_probs=101.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE-EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ-IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~-~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
...++|.+....|+.+-...+.|..++.+.+.... .+ .........+++.+. ++...++-.
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---------------~~~l~~p~glavd~~---~g~ly~~d~ 98 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------------VSGLLSPDGLACDWL---GEKLYWTDS 98 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---------------EECCSCCCEEEEETT---TTEEEEEET
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---------------cCCCCCccEEEEEcC---CCeEEEEEC
Confidence 46778888766677777778889999887653211 12 222345667888862 455556666
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA 495 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~ 495 (540)
..+.|.+.+++... ....+.........+++.|.+..|..+.. .+.|...+.+|.....+....- .
T Consensus 99 ~~~~I~~~~~dG~~-----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l-~ 166 (318)
T 3sov_A 99 ETNRIEVSNLDGSL-----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-Y 166 (318)
T ss_dssp TTTEEEEEETTSCS-----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-S
T ss_pred CCCEEEEEECCCCc-----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC-C
Confidence 77899999876421 11122234456789999987665555543 4566666667765544432211 1
Q ss_pred CceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242 496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR 528 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~ 528 (540)
.+..|++++++..|..+ ..+.|..++++|....
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence 57899999977766654 4678999999875433
No 257
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.02 E-value=0.023 Score=56.26 Aligned_cols=161 Identities=7% Similarity=0.077 Sum_probs=101.1
Q ss_pred EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEe---ccCccCCCcEEEEE
Q psy1242 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSR---SECNITADCFIASG 416 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~---sp~~~~dg~~l~sg 416 (540)
|.+|.+....++++.-..++|..|+...+......... +.+ .+- ...+..|.| .| +++++++.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~---~s~------~g~~~~~~sGl~~~~~D~----~grL~vv~ 83 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDG---ASS------NGDGEQQMSGLSLLTHDN----SKRLFAVM 83 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTT---TCC------SSCCSEEEEEEEESSSSS----CCEEEEEE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCC---ccc------cCCCcceeeEEEEeccCC----CCcEEEEE
Confidence 45677765656666668999999999755443322000 000 010 113578999 68 77777754
Q ss_pred e-------------CCCcEEEEEcC---CCcccccCCCCCCcceEEecc-----------CCCCEEEEEEcCCCCEEEEE
Q psy1242 417 S-------------ADCTVLLWHWN---ARTQSIVGETDTPTPRATLTG-----------HEQPVTSVAISAELGLVVSG 469 (540)
Q Consensus 417 s-------------~DgtV~lWd~~---~~~~~~~~~~~~~~~~~~l~~-----------h~~~V~~v~~spdg~~lasg 469 (540)
. .+..|..+|+. ++.. .....|.+ -......+++.++|...+++
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---------~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKP---------VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---------SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCE---------EEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 3 26778889987 3221 11112211 11247899999999999999
Q ss_pred eCC-CcEEEEeCCCcEEEEec--CCC--CCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242 470 SQL-GPVLVHTTFGDLLRSLD--PPS--GFASPESVVMSREGVIVVNY-ERGHIAAFTMN 523 (540)
Q Consensus 470 s~D-g~v~iw~~~g~~~~~l~--~~~--~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~ 523 (540)
+.. +.|...+.+|+.+..+. ... .....+.|+++|+|+.|+.. ..|.|..+|++
T Consensus 155 s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 988 88766677776444332 111 11135799999999987773 47889999976
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.98 E-value=0.13 Score=48.77 Aligned_cols=140 Identities=7% Similarity=-0.008 Sum_probs=87.1
Q ss_pred CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426 (540)
Q Consensus 347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd 426 (540)
++..|.+..-.++.+.++|.++.+.+.++.. .+ .+ ..+ ++ ++..|+.+..++.|.++|
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-------------~~-~G--wgl--t~----dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRY-------------PG-EG--WAL--TS----DDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEEC-------------SS-CC--CEE--EE----CSSCEEEECSSSEEEEEC
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeC-------------CC-Cc--eEE--ee----CCCEEEEECCCCeEEEEe
Confidence 4566777777899999999999999998831 12 11 233 34 666666666788999998
Q ss_pred cCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCCC--------
Q psy1242 427 WNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPPS-------- 492 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~~-------- 492 (540)
..+. +.+..+.- +. ..++.+.+. +|++.+..-.+..|. |...+|+.+..+....
T Consensus 131 p~t~-----------~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~ 198 (243)
T 3mbr_X 131 PDTL-----------QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL 198 (243)
T ss_dssp TTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred CCCC-----------eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc
Confidence 7652 23333321 21 234556655 666655554455664 4566999988776321
Q ss_pred ---CCCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242 493 ---GFASPESVVMSREGVIVVNYERGHIAAF 520 (540)
Q Consensus 493 ---~~~~v~~l~fspdg~~l~s~~dg~I~lw 520 (540)
.....+.||++|+++.|...+..-=++|
T Consensus 199 ~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 199 TDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp CCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 1114688999998776665434333333
No 259
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.96 E-value=0.013 Score=64.61 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE 498 (540)
Q Consensus 420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~ 498 (540)
|+|..||+.++ +.+-.+..+. .+..-.+...+.+++.|+.||.++.|+. +|+.+.+++.+.+. ...
T Consensus 455 g~l~A~D~~tG-----------~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~ 521 (689)
T 1yiq_A 455 GKLIAWDPVKQ-----------QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV-MAA 521 (689)
T ss_dssp EEEEEEETTTT-----------EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSC
T ss_pred eeEEEEECCCC-----------CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc-ccC
Confidence 67888887663 3333333232 2233355667889999999999999975 89999988876542 224
Q ss_pred EEEEeeCCCEEEE
Q psy1242 499 SVVMSREGVIVVN 511 (540)
Q Consensus 499 ~l~fspdg~~l~s 511 (540)
-+.++.+|+..++
T Consensus 522 p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 522 PVTYSVDGEQYVT 534 (689)
T ss_dssp CEEEEETTEEEEE
T ss_pred ceEEEECCEEEEE
Confidence 4778889985443
No 260
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.94 E-value=0.18 Score=52.09 Aligned_cols=159 Identities=8% Similarity=0.079 Sum_probs=94.9
Q ss_pred EEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242 340 NCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS 417 (540)
Q Consensus 340 ~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs 417 (540)
..+++.| +|. |+++-..++.|+.++..++.....+.. .+....-..|+++| +|++| ++-.
T Consensus 231 ~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~-------------~~~~~~~~~ia~dp----dG~~LYvad~ 292 (433)
T 4hw6_A 231 KTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVM-------------MDTKGSNFHIVWHP----TGDWAYIIYN 292 (433)
T ss_dssp CCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEE-------------CSCCSSCEEEEECT----TSSEEEEEET
T ss_pred CEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEec-------------cCCCCCcccEEEeC----CCCEEEEEeC
Confidence 4467788 565 666666778899999887776333310 11122334799999 88854 5555
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEecc---------------CCCCEEEEEE---------cCCCCEEEEEeCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTG---------------HEQPVTSVAI---------SAELGLVVSGSQLG 473 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---------------h~~~V~~v~~---------spdg~~lasgs~Dg 473 (540)
..+.|..++.+...... .....+.+ .-.....+++ .++|.++++-...+
T Consensus 293 ~~~~I~~~~~d~~~~~~-------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKL-------AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp TTTEEEEEEBCTTTCCB-------CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred CCCEEEEEeCCCCCccc-------CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 67889998876322110 00011111 1124567898 67777777777777
Q ss_pred cEEEEeCCCcEEEEecCCC-------C--------CCCceEEEEe-eCCCEEEE-ecCCeEEEEecC
Q psy1242 474 PVLVHTTFGDLLRSLDPPS-------G--------FASPESVVMS-REGVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 474 ~v~iw~~~g~~~~~l~~~~-------~--------~~~v~~l~fs-pdg~~l~s-~~dg~I~lw~~~ 523 (540)
.|+..+.+|......-... . ...+..|++. ++|.+.++ ...++|+.++++
T Consensus 366 ~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 366 TVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8888887885443332111 0 1136789998 56665555 345777777654
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.85 E-value=0.39 Score=46.63 Aligned_cols=164 Identities=9% Similarity=0.032 Sum_probs=87.8
Q ss_pred EEEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
...+++.++|+ ++++....+ .|..++..+++...... .........++..+ ++..+++.
T Consensus 74 p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~--------------~~~~~~~~g~~~~~----~~~~~v~d 134 (306)
T 2p4o_A 74 VSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLT--------------LPDAIFLNGITPLS----DTQYLTAD 134 (306)
T ss_dssp EEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEE--------------CTTCSCEEEEEESS----SSEEEEEE
T ss_pred ceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEe--------------CCCccccCcccccC----CCcEEEEE
Confidence 56778899999 455554332 36667777777543321 01112234444444 55555555
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CcE--EEEecC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTTF--GDL--LRSLDP 490 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~~--g~~--~~~l~~ 490 (540)
..++.|.++|........... ..... ....+.-.....+ +++++.| ++-+..+.|..++.+ ++. ...+..
T Consensus 135 ~~~g~i~~~d~~~~~~~v~~~--~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~ 210 (306)
T 2p4o_A 135 SYRGAIWLIDVVQPSGSIWLE--HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 210 (306)
T ss_dssp TTTTEEEEEETTTTEEEEEEE--CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEeEEEE--CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec
Confidence 567888877764321110000 00000 0000111234555 7888755 445556778776543 321 111111
Q ss_pred CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEE
Q psy1242 491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLR 528 (540)
Q Consensus 491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~ 528 (540)
. . .+..+++.++|++.++ ...+.|.+++.+|+...
T Consensus 211 ~-~--~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~ 246 (306)
T 2p4o_A 211 Q-T--NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI 246 (306)
T ss_dssp S-C--CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE
T ss_pred c-C--CCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEE
Confidence 1 1 4578999999987666 44689999999988744
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.71 E-value=0.29 Score=48.01 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=96.6
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D 419 (540)
..+++.+.+..|+++-...+.|.+.+.+... ...+. .........++++| .+..|..+...
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~--------------~~~~~~P~~iavdp----~~g~ly~~d~~ 140 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------RENGSKPRAIVVDP----VHGFMYWTDWG 140 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE--------------ECTTCCEEEEEEET----TTTEEEEEECS
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE--------------ECCCCCcceEEeCC----CCCEEEEEccC
Confidence 3456677666677777778899999987433 33330 22345678999998 55555544443
Q ss_pred --CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242 420 --CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDP-PSGF 494 (540)
Q Consensus 420 --gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~-~~~~ 494 (540)
+.|...+++.. ....+ ...-.....+++++++..|..+. ..+.|...+.+|...+.+.. ....
T Consensus 141 ~~~~I~~~~~dG~------------~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~ 208 (316)
T 1ijq_A 141 TPAKIKKGGLNGV------------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 208 (316)
T ss_dssp SSCEEEEEETTSC------------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred CCCeEEEEcCCCC------------CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCcc
Confidence 67777776531 22222 22335678999998776665544 55677777776654444422 1111
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHE 530 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~ 530 (540)
..+..+++. .+.+.++ ...+.|..++. +|+.+..+
T Consensus 209 ~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 209 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 146788885 4444444 45688999986 47655544
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.70 E-value=0.19 Score=47.98 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=97.9
Q ss_pred EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC 420 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg 420 (540)
.+++.+++.+ +++.-.++.+.++++.....+..+....-.+ . ........-.|+++| .++.|.++...+
T Consensus 74 GIa~~~~g~~-~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-----~-~~~~N~g~EGLA~d~----~~~~L~va~E~~ 142 (255)
T 3qqz_A 74 TIEYIGDNQF-VISDERDYAIYVISLTPNSEVKILKKIKIPL-----Q-ESPTNCGFEGLAYSR----QDHTFWFFKEKN 142 (255)
T ss_dssp EEEECSTTEE-EEEETTTTEEEEEEECTTCCEEEEEEEECCC-----S-SCCCSSCCEEEEEET----TTTEEEEEEESS
T ss_pred HeEEeCCCEE-EEEECCCCcEEEEEcCCCCeeeeeeeecccc-----c-cccccCCcceEEEeC----CCCEEEEEECcC
Confidence 4555678874 4555467889898876544322221000000 0 012344578999999 777777777666
Q ss_pred cEEEEEcCCCcccccCCCCCCcceEEec-------cCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCcEEEEecCCC
Q psy1242 421 TVLLWHWNARTQSIVGETDTPTPRATLT-------GHEQPVTSVAISAELGLVVSGSQL-GPVLVHTTFGDLLRSLDPPS 492 (540)
Q Consensus 421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~~spdg~~lasgs~D-g~v~iw~~~g~~~~~l~~~~ 492 (540)
...||.++.... ...+..+. .+...+.+++++|....+...|.. ..+.+.+.+|+.+..+....
T Consensus 143 p~~i~~~~g~~~--------~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~ 214 (255)
T 3qqz_A 143 PIEVYKVNGLLS--------SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTK 214 (255)
T ss_dssp SEEEEEEESTTC--------SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECST
T ss_pred CceEEEEccccc--------CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCC
Confidence 666776652110 01112221 123356889999976665555554 45556788999877665543
Q ss_pred CC-------CCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 493 GF-------ASPESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 493 ~~-------~~v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
+. .....|+|.++|.+.++++.+.++.|...
T Consensus 215 g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 215 GSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred ccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence 21 15689999999998888877878877654
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.64 E-value=0.14 Score=51.15 Aligned_cols=157 Identities=8% Similarity=-0.031 Sum_probs=95.8
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSA 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~ 418 (540)
..+++.+.+..|+++-...+.|.+.+++.......+ .........|+++| .+..| ++-..
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~---------------~~~l~~P~~iavdp----~~g~ly~td~~ 179 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------------WQSLEKPRAIALHP----MEGTIYWTDWG 179 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CTTCSCEEEEEEET----TTTEEEEEECS
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE---------------eCCCCCcceEEEec----CcCeEEEeccC
Confidence 456777766667777777888999998743322222 23345678999998 55444 44444
Q ss_pred C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEec-CCCCC
Q psy1242 419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLD-PPSGF 494 (540)
Q Consensus 419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~-~~~~~ 494 (540)
. +.|...+++.. ....+ ...-.....+++++++..|..+ +..+.|...+.+|...+.+. ....
T Consensus 180 ~~~~I~r~~~dG~------------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~- 246 (349)
T 3v64_C 180 NTPRIEASSMDGS------------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP- 246 (349)
T ss_dssp SSCEEEEEETTSC------------SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-
T ss_pred CCCEEEEEeCCCC------------CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-
Confidence 4 67777776542 12222 2223457899999876655544 45667777777665444332 2222
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE 530 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~ 530 (540)
.+..+++ .++.+.++ ...+.|..++ .+|+.+..+
T Consensus 247 -~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 247 -HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp -SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 5678888 34544444 4568888888 567655444
No 265
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.62 E-value=0.2 Score=49.38 Aligned_cols=157 Identities=10% Similarity=0.055 Sum_probs=95.6
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA- 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~- 418 (540)
..+++.+.+..|+++-...+.|.+.+++.. ....+. .........|+++| .+..|..+..
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~--------------~~~~~~P~giavdp----~~g~ly~td~~ 142 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLF--------------WQELDQPRAIALDP----SSGFMYWTDWG 142 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--------------CSSCSSEEEEEEEG----GGTEEEEEECS
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEE--------------eCCCCCccEEEEeC----CCCEEEEEecC
Confidence 346667766667777777788999998743 322330 23445678999998 5445554442
Q ss_pred -CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242 419 -DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLDP-PSGF 494 (540)
Q Consensus 419 -DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~~-~~~~ 494 (540)
.+.|...+++.. ....+ ...-..-..++++++++.|..+ +..+.|...+.+|...+.+.. ...
T Consensus 143 ~~~~I~r~~~dG~------------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~- 209 (318)
T 3sov_A 143 EVPKIERAGMDGS------------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP- 209 (318)
T ss_dssp SSCEEEEEETTSC------------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-
T ss_pred CCCEEEEEEcCCC------------CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-
Confidence 467777776531 12222 2233456899999976655554 456677777776655444432 222
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHE 530 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~ 530 (540)
.+..+++..+ .+.++ ...+.|..++. +|+.+..+
T Consensus 210 -~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 210 -HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp -CEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEE
Confidence 5678888643 33334 45688999998 47655444
No 266
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.62 E-value=0.18 Score=56.42 Aligned_cols=160 Identities=13% Similarity=0.008 Sum_probs=101.4
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC-cEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD-CFI 413 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg-~~l 413 (540)
...+++.+....|+++-...+.|+.+++.... ....+ .........|++.+ .+ ++.
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi---------------~~~l~~P~GLAvD~----~~~~LY 486 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDW----IHSNIY 486 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---------------CSSCSCCCEEEEET----TTTEEE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE---------------ecCCCCcceeeeee----cCCcEE
Confidence 45677787666677777667788888876421 12222 33445677889987 45 555
Q ss_pred EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCcEEEEecC
Q psy1242 414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ-L-GPVLVHTTFGDLLRSLDP 490 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~-D-g~v~iw~~~g~~~~~l~~ 490 (540)
++-...++|.+.+++.. ...++ .........|++.|....|..... . +.|...+.+|.....+..
T Consensus 487 ~tD~~~~~I~v~~ldG~------------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 487 WTDSVLGTVSVADTKGV------------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTSS------------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEecCCCeEEEEeCCCC------------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 66667889999987642 22222 334456889999998665555543 2 566666777776665543
Q ss_pred CCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242 491 PSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 491 ~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~ 530 (540)
..- ..+..|++.+.+..|+.+ ..+.|..++++|..+..+
T Consensus 555 ~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 555 ENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp SSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 221 157899999877766654 457899999987654443
No 267
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.60 E-value=0.091 Score=52.62 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=86.5
Q ss_pred EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE-EEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242 352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT-CLSRSECNITADCFIASGSADCTVLLWHWNAR 430 (540)
Q Consensus 352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt-~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~ 430 (540)
+..++.++.|..+|..+|+.+........... .......+. .+.. ++..++.++.++.|..+|..++
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKDGW------FSKEPALLSGGVTV------SGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---C------CSCCCCCEEEEEEE------ETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcccccc------ccccCcccccCceE------eCCEEEEEcCCCEEEEEECCCC
Confidence 45666789999999999998866622110000 000012222 2222 3457788889999999998763
Q ss_pred cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC---CceEEEEeeCC
Q psy1242 431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA---SPESVVMSREG 506 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~---~v~~l~fspdg 506 (540)
+ .+-............... +..++.++.++.+..++. +|+.+.......... ........ ++
T Consensus 124 ~-----------~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~ 189 (376)
T 3q7m_A 124 T-----------VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG 189 (376)
T ss_dssp C-----------EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT
T ss_pred C-----------EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC
Confidence 3 222222111111111222 447778888998887765 899887776543210 00122222 45
Q ss_pred CEEEEecCCeEEEEecC-CcEEEeee
Q psy1242 507 VIVVNYERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 507 ~~l~s~~dg~I~lw~~~-g~~l~~~~ 531 (540)
.+++...++.|..+|+. |+.+-...
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 54444567899999985 77765554
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.53 E-value=0.14 Score=52.09 Aligned_cols=157 Identities=8% Similarity=-0.032 Sum_probs=95.4
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-C
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-A 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~ 418 (540)
..+++.+.+..|+++-...+.|.+.+++.......+ .........|+++| .+..|..+. .
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~---------------~~~l~~P~giavdp----~~g~ly~td~~ 222 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------------WQSLEKPRAIALHP----MEGTIYWTDWG 222 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE---------------CSSCSCEEEEEEET----TTTEEEEEECS
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee---------------cCCCCCCcEEEEEc----CCCeEEEeccC
Confidence 345667766667777777788888887643322222 33345678999998 555554444 4
Q ss_pred C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242 419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLDP-PSGF 494 (540)
Q Consensus 419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~~-~~~~ 494 (540)
. +.|...+++.. ....+ ...-.....|+++|++..|..+ +..+.|...+.+|...+.+.. ...
T Consensus 223 ~~~~I~r~~~dG~------------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~- 289 (386)
T 3v65_B 223 NTPRIEASSMDGS------------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP- 289 (386)
T ss_dssp SSCEEEEEETTSC------------SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-
T ss_pred CCCEEEEEeCCCC------------CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-
Confidence 4 67777776542 12222 2334457899999876655444 456677777776654443332 222
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE 530 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~ 530 (540)
.+..|++ ..+.+.++ ...+.|..++ .+|+.+..+
T Consensus 290 -~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 290 -HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp -SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 5678888 44444444 4578899888 567655544
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.47 E-value=0.082 Score=58.01 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242 472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN 533 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~ 533 (540)
+|.|..|+. +|+.+.....+. ++....+...|.+|+.+ .++.|++||.. |+.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 367777775 898887766443 23344555667777665 58999999987 9988877643
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.46 E-value=0.36 Score=46.92 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=86.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...++++++|+ |+++...++.|..+|... +....+ .-.....++++++ +|+++++...
T Consensus 34 pegia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~----------------~~~~~p~gia~~~----dG~l~vad~~ 91 (306)
T 2p4o_A 34 LENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHA----------------TVEGKVSGLAFTS----NGDLVATGWN 91 (306)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEE----------------ECSSEEEEEEECT----TSCEEEEEEC
T ss_pred cceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEE----------------eCCCCceeEEEcC----CCcEEEEecc
Confidence 45678899998 677776789999998874 433333 1234688999999 8887666544
Q ss_pred CCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcE-EEEec-----
Q psy1242 419 DCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GDL-LRSLD----- 489 (540)
Q Consensus 419 Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~~-~~~l~----- 489 (540)
... |..++...+.. +.+..+ ........++..+++..+++.+.++.|.+.+.. ++. +....
T Consensus 92 ~~~~~v~~~d~~~g~~---------~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGTV---------ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp TTSCEEEEEECTTSCE---------EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCcceEEEEcCCCCeE---------EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 333 54555433211 111111 112234556656655555555567877766653 321 21111
Q ss_pred --CCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242 490 --PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG 524 (540)
Q Consensus 490 --~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g 524 (540)
.......+..+ +++|+.|..+ ..++|..|++++
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 01111134555 8998877664 367899999873
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.32 E-value=0.13 Score=53.20 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=89.2
Q ss_pred EEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242 339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG 416 (540)
Q Consensus 339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg 416 (540)
...+++.|+ +..|+++-.. +.|+.+|..+++..... +......+|++++ +|+++++.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~----------------~~~~~P~giavd~----dG~lyVad 199 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT----------------TNIGQCADVNFTL----NGDMVVVD 199 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC----------------CCCSCEEEEEECT----TCCEEEEE
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee----------------cCCCCccEEEECC----CCCEEEEc
Confidence 356778884 3445555443 89999999877755433 3445688999999 88855554
Q ss_pred eCC---Cc-EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEe-c
Q psy1242 417 SAD---CT-VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSL-D 489 (540)
Q Consensus 417 s~D---gt-V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l-~ 489 (540)
... .. +...+... . ......+. .......++++| ++.+.++-..++.|+.++. ++.....+ .
T Consensus 200 ~~~~~~~~gv~~~~~~~-~---------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 200 DQSSDTNTGIYLFTRAS-G---------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp CCSCTTSEEEEEECGGG-T---------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred CCCCcccceEEEEECCC-C---------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence 321 12 22222111 0 00001121 223345688999 6776666666778877776 47663333 2
Q ss_pred CCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242 490 PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 490 ~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~ 523 (540)
.... .....++|+|+|+.|..+ ..++|..++.+
T Consensus 269 ~~~~-~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 269 MDTK-GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSCC-SSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred cCCC-CCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 2221 123579999999965553 46789998876
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.28 E-value=0.37 Score=49.62 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=92.2
Q ss_pred EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-EEEE
Q psy1242 339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-IASG 416 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-l~sg 416 (540)
...++++| +|. |+++-..++.|..++..++....... .+....-..|+++| +|++ +++-
T Consensus 228 p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~--------------~~~~~~P~gia~~p----dG~~lyv~d 288 (430)
T 3tc9_A 228 CNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFT--------------IQDSGWEFHIQFHP----SGNYAYIVV 288 (430)
T ss_dssp CCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEE--------------CSSSSCCEEEEECT----TSSEEEEEE
T ss_pred ceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEE--------------cCCCCcceeEEEcC----CCCEEEEEE
Confidence 35567899 565 67777678899999998665432220 11223467899999 8985 4555
Q ss_pred eCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEE-EEEEc--------CCCCEEEEEeCC
Q psy1242 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVT-SVAIS--------AELGLVVSGSQL 472 (540)
Q Consensus 417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~-~v~~s--------pdg~~lasgs~D 472 (540)
...+.|..++.+...... .....+.+. -..-. .+++. ++|.++++-...
T Consensus 289 ~~~~~I~~~~~d~~~~~~-------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRL-------TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp TTTTEEEEEEEETTTTEE-------CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCcccccc-------cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 567899998876421110 001111110 11122 45553 346666666666
Q ss_pred CcEEEEeCCCcEEEEecCC----CC-----------CCCceEEEEeeC-CCEEEE-ecCCeEEEEecC
Q psy1242 473 GPVLVHTTFGDLLRSLDPP----SG-----------FASPESVVMSRE-GVIVVN-YERGHIAAFTMN 523 (540)
Q Consensus 473 g~v~iw~~~g~~~~~l~~~----~~-----------~~~v~~l~fspd-g~~l~s-~~dg~I~lw~~~ 523 (540)
+.|+.++.+|......... .+ ...+..|++.|+ |.++++ ...+.|+.++++
T Consensus 362 ~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 362 HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 7787777777654433210 00 114789999995 555544 345778877764
No 273
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.17 E-value=0.49 Score=51.40 Aligned_cols=155 Identities=8% Similarity=-0.006 Sum_probs=99.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...+++.+.+..|+.+-..++.|..++++.......+ .........|++.+. .+++.++-..
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~---------------~~g~~~P~GlAvD~~---~~~LY~tD~~ 100 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV---------------EFGLDYPEGMAVDWL---GKNLYWADTG 100 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE---------------eCCCCCcceEEEEeC---CCEEEEEECC
Confidence 4567888887777778777889999988754433333 222245678888861 3455566566
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA 495 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~ 495 (540)
.+.|.+.+++... ...+ ...-.....|++.|....|..... .+.|...+.+|.....+...-.
T Consensus 101 ~~~I~v~~~dG~~------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~-- 166 (628)
T 4a0p_A 101 TNRIEVSKLDGQH------------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG-- 166 (628)
T ss_dssp TTEEEEEETTSTT------------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCS--
T ss_pred CCEEEEEecCCCc------------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCC--
Confidence 7889988876422 2222 233445789999986555555443 3455555666665444433223
Q ss_pred CceEEEEeeCCCEEEEe--cCCeEEEEecCCc
Q psy1242 496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGN 525 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~ 525 (540)
.+..|+++++++.|..+ ..+.|..++++|.
T Consensus 167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 57899999987766654 4578999998864
No 274
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.11 E-value=0.49 Score=52.70 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=98.1
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.++...++|. |-.|..++-|..|+..+++........... . ..-....|.++...+ +|+.|..|+.
T Consensus 359 V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~------~-~~l~~~~v~~i~~d~----~g~~lWigt~ 425 (795)
T 4a2l_A 359 VSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDES------A-RGIGSNNIKAVYVDE----KKSLVYIGTH 425 (795)
T ss_dssp EEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC-------------CCSCSCEEEEEEET----TTTEEEEEET
T ss_pred eEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCc------c-cCCCCccEEEEEEcC----CCCEEEEEeC
Confidence 66777778887 356777778999998876543322000000 0 000235789999887 7875666787
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC-
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLT-----GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP- 491 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~- 491 (540)
++-+.++|..+.. ...+. .....|.++...++|.+.+... +| +.+++. +++. ..+...
T Consensus 426 ~~Gl~~~d~~~~~------------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~-~~~~~~~ 490 (795)
T 4a2l_A 426 AGGLSILHRNSGQ------------VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSF-TTIEKEK 490 (795)
T ss_dssp TTEEEEEETTTCC------------EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEE-EECCBCT
T ss_pred cCceeEEeCCCCc------------EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeE-EEccccc
Confidence 7778999876522 12221 2345799999988888665544 55 545544 4443 333211
Q ss_pred ----CCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242 492 ----SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL 527 (540)
Q Consensus 492 ----~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l 527 (540)
.....|.++...++|.+.++.. +-|..|+.++...
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred cccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence 0112578899999998877765 6688888765444
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.00 E-value=0.93 Score=46.08 Aligned_cols=161 Identities=9% Similarity=-0.024 Sum_probs=97.3
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...+++.+.+..|+++-...+.|.+.+++.......+ .........|+++| .+..|.....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~---------------~~~~~~P~~iavdp----~~g~ly~td~ 221 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF---------------RENGSKPRAIVVDP----VHGFMYWTDW 221 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE---------------ECSSCCEEEEEEET----TTTEEEEEEC
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE---------------eCCCCCcceEEEec----ccCeEEEEeC
Confidence 4566777766667777777889999998744433333 33345578999998 5555554442
Q ss_pred --CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecCC-CCC
Q psy1242 419 --DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDPP-SGF 494 (540)
Q Consensus 419 --DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~~-~~~ 494 (540)
.+.|...+++... ....+...-.....|+++++++.|..+. ..+.|...+.+|...+.+... ...
T Consensus 222 ~~~~~I~~~~~dG~~-----------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 222 GTPAKIKKGGLNGVD-----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp SSSCCEEEEETTSCS-----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCCc-----------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 3677777765421 1122233335678999998777666554 456677767766554444321 111
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE 530 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~ 530 (540)
..+.++++. .+.+.++ ...+.|..++ .+|+.+..+
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 145677773 3344444 4567888888 557655544
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.88 E-value=0.16 Score=56.38 Aligned_cols=152 Identities=14% Similarity=-0.001 Sum_probs=77.2
Q ss_pred EEEEEecCCCEEEEEEecC-----CcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242 340 NCFVTTVDSRFLLACGFWD-----NSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF 412 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~D-----gsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~ 412 (540)
..++|+|||+.|+.+. .| ..|.++++.++.. ...+. ..+......+.|+| ||++
T Consensus 224 ~~~~WspDg~~l~y~~-~d~~~~~~~v~~~~lgt~~~~~~lv~~--------------~~~~~~~~~~~~Sp----Dg~~ 284 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVT-KDETLRENKVWRHVMGKLQSEDVCLYE--------------EHNPLFSAFMYKAA----DTNT 284 (751)
T ss_dssp SCCEECSSTTEEEEEE-ECTTCCEEEEEEEETTSCGGGCEEEEE--------------CCCTTCEEEEEECT----TSSE
T ss_pred eeEEEecCCCEEEEEE-ECCCCCCCEEEEEECCCCchhcEEEEe--------------cCCCceEEEEEECC----CCCE
Confidence 4678999999865554 43 2577778776542 22221 12234567889999 9998
Q ss_pred EEEEeC---CCcEEEEEcCCCcccccCCCCCCcc-eEEe-ccCCCCEEEEEEcCCCCEEEEEeCC--CcEEE--EeCC--
Q psy1242 413 IASGSA---DCTVLLWHWNARTQSIVGETDTPTP-RATL-TGHEQPVTSVAISAELGLVVSGSQL--GPVLV--HTTF-- 481 (540)
Q Consensus 413 l~sgs~---DgtV~lWd~~~~~~~~~~~~~~~~~-~~~l-~~h~~~V~~v~~spdg~~lasgs~D--g~v~i--w~~~-- 481 (540)
|+..+. ...|.++|+.... .+. +..+ .+......++.|+..+.+++....+ +..+| .+..
T Consensus 285 l~~~~~~~~~~~l~~~d~~~~~---------~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~ 355 (751)
T 2xe4_A 285 LCIGSQSPETAEVHLLDLRKGN---------AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP 355 (751)
T ss_dssp EEEEEECSSCEEEEEEESSSCT---------TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST
T ss_pred EEEEecCCCCceEEEEECCCCC---------CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc
Confidence 876553 3356667765421 112 1233 3334455566655444444444444 33344 3443
Q ss_pred CcEEE-EecCCCCCCCceEEEEeeCCCEEEE--ecCCe--EEEEec
Q psy1242 482 GDLLR-SLDPPSGFASPESVVMSREGVIVVN--YERGH--IAAFTM 522 (540)
Q Consensus 482 g~~~~-~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~--I~lw~~ 522 (540)
++... .+. +.....+.. +++.+..|+. ..++. |.++++
T Consensus 356 ~~~~~~li~-~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 356 SDWSHVLVD-HSEDVFMES--IAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TCCCCEEEC-CCSSEEEEE--EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred ccceeeEEC-CCCCcEEEE--EEEECCEEEEEEEeCCEEEEEEEec
Confidence 22222 222 222112334 4445555544 34554 666675
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.71 E-value=0.22 Score=52.24 Aligned_cols=163 Identities=8% Similarity=0.013 Sum_probs=92.3
Q ss_pred EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe-------ccCccCCC
Q psy1242 339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR-------SECNITAD 410 (540)
Q Consensus 339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~-------sp~~~~dg 410 (540)
...+++.| +...|+++....+.|++.|..++.....+... .+.......|+| ++ +|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~------------~~~~~~p~~ia~~~~~~~~d~----~G 204 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN------------TIPTNRIRSIAFNKKIEGYAD----EA 204 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT------------TSSCSBEEEEEECCCBTTTBC----TT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC------------ccccCCCcEEEEeecccccCC----CC
Confidence 45677888 45557777665678999999876665444100 112235789999 99 88
Q ss_pred cEEEEEeCCC-c------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC--
Q psy1242 411 CFIASGSADC-T------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-- 480 (540)
Q Consensus 411 ~~l~sgs~Dg-t------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-- 480 (540)
++|+.+...+ . |.+.+... .+.... ......+..+ . ...+++++|+ +.++++-..++.|..++.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~-~G~~~~-~~~~~~v~~~-~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNA-DGTFDD-RSDIQLIAAY-K---QCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCT-TSCCST-TSCEEEEEEE-S---CCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred CEEEEEeCCCCCcccCceEEEEecCC-CCceee-cccceeeccC-C---CceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 8666666543 2 44554221 111100 0000122222 1 2346788995 555666667777866643
Q ss_pred ------CCcE-----------EEE-ecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecCC
Q psy1242 481 ------FGDL-----------LRS-LDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNG 524 (540)
Q Consensus 481 ------~g~~-----------~~~-l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g 524 (540)
++.. ... +..... ..+..|+|+|+|++|.. ...++|+.++.++
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~-~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADP-SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEECSSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccCceeecccccccccccceeEecCCC-CCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 3432 112 222222 14689999999996554 3468899877764
No 278
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.68 E-value=0.015 Score=64.28 Aligned_cols=158 Identities=13% Similarity=0.017 Sum_probs=91.9
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
..++|.+.+..|+++-...+.|+.+++... .....+ .........|++.+. .+.++++
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i---------------~~~~~~P~glavD~~---~g~LY~t 470 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDWI---HSNIYWT 470 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---------------CSCC--CCCEECCCS---SSBCEEC
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---------------eCCCCCcceEEEEee---CCcEEEE
Confidence 456778877767666666788888888641 111111 111223456788751 4555565
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCcEEEEecCCC
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGS-QL-GPVLVHTTFGDLLRSLDPPS 492 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs-~D-g~v~iw~~~g~~~~~l~~~~ 492 (540)
-...+.|.+.++... ....+ .........|+++|.+..|+.+. .. +.|...+.+|.....+....
T Consensus 471 D~~~~~I~v~d~dg~------------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 471 DSVLGTVSVADTKGV------------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp CTTTSCEEEEBSSSC------------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred eccCCeEEEEecCCC------------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 566788999887642 12222 22223456788998655444433 22 56666566665544443221
Q ss_pred CCCCceEEEEeeCCCEEEE--ecCCeEEEEecCCcEEE
Q psy1242 493 GFASPESVVMSREGVIVVN--YERGHIAAFTMNGNRLR 528 (540)
Q Consensus 493 ~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g~~l~ 528 (540)
. ..+..|+|+|++..|+. +..+.|..++++|....
T Consensus 539 l-~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 539 I-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp C-SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred C-CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 1 14678999998665554 34678999999875433
No 279
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.67 E-value=1.1 Score=49.94 Aligned_cols=160 Identities=12% Similarity=0.126 Sum_probs=99.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.++...++|. |-.|+.++-|..++..+++.. .+...... . .-....|.++...+ +|. |-.|+.
T Consensus 312 i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~------~--~l~~~~V~~i~~d~----~g~-lWiGt~ 375 (795)
T 4a2l_A 312 VRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK-NIRNIPYK------N--SLSDNVVSCIVEDK----DKN-LWIGTN 375 (795)
T ss_dssp EEEEEECTTSC--EEEEESSSCEEEECGGGGSSE-EECCCTTS------S--SCSCSSEEEEEECT----TSC-EEEEES
T ss_pred EEEEEEeCCcC--EEEEECCCCeEEeCCCcccce-EEcCCCCC------C--CCCCCeeEEEEECC----CCC-EEEEEC
Confidence 66777788887 456777788999987755432 22100000 0 01235699999887 665 445777
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEec---------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---------GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL 488 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l 488 (540)
++-+..|+..+.. ...+. -....|.+++..+++.+|..|+.++-+..++. +++. ..+
T Consensus 376 ~~Gl~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~ 442 (795)
T 4a2l_A 376 DGGLNLYNPITQR------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENF 442 (795)
T ss_dssp SSCEEEECTTTCC------------EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEE
T ss_pred CCCeEEEcCCCCc------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEe
Confidence 7778889865422 11111 12357999999888884566777666766665 4544 333
Q ss_pred cC-----CCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242 489 DP-----PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 489 ~~-----~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~ 530 (540)
.. +.. .|.++...++|.+.++.. +.|.+|+++......+
T Consensus 443 ~~~~~~l~~~--~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 443 NQRNSQLVNE--NVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp CTTTSCCSCS--CEEEEEECSSSCEEEEES-SCEEEEETTTTEEEEC
T ss_pred ecCCCCcCCC--eeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEc
Confidence 32 122 578888888898777655 5688899875544443
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.48 E-value=1.7 Score=47.26 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=33.5
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEeC-CCcEEEEecC-CCCCCCceEEEEeeCCCEEEEec
Q psy1242 456 SVAISAELGLVVSGSQL-----------GPVLVHTT-FGDLLRSLDP-PSGFASPESVVMSREGVIVVNYE 513 (540)
Q Consensus 456 ~v~~spdg~~lasgs~D-----------g~v~iw~~-~g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~ 513 (540)
+++..|++++++.|+.+ ..+.+|+. +.+. ..+.. ........+..+.++|++++.|+
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCCCCCccccccHhhcCCCcEEEecCC
Confidence 44566899999998754 34677765 3332 22221 11111223455678999999875
No 281
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.48 E-value=0.96 Score=48.95 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=96.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs 417 (540)
...+++++.+..|+.+-...+.|..++++.......+ +.........|++++ .+. +.++-.
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--------------~~~~~~~P~GlAvD~----~~~~ly~~d~ 103 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------------VVSGLLSPDGLACDW----LGEKLYWTDS 103 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE--------------ECSSCSCEEEEEEET----TTTEEEEEET
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE--------------EeCCCCCcCeEEEEe----cCCEEEEEeC
Confidence 4567788877777777666788888888744221222 022235678899987 444 455555
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGF 494 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~ 494 (540)
..+.|.+.+++... ...+ .+.-.....|++.|.+..|..... .+.|..-..+|.....+.....
T Consensus 104 ~~~~I~v~~~dG~~------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~- 170 (619)
T 3s94_A 104 ETNRIEVSNLDGSL------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI- 170 (619)
T ss_dssp TTTEEEEEETTSCS------------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-
T ss_pred CCCEEEEEECCCCC------------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC-
Confidence 67899999876522 2222 233345668999997655554443 3445444566765544432221
Q ss_pred CCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242 495 ASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR 528 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~ 528 (540)
..+..|+++++++.|..+ ..+.|..++++|....
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence 157899999987766554 4578999998875443
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.40 E-value=0.15 Score=54.77 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 461 AELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 461 pdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
..+..++.++.||.++.++. +|+.+.++...... .-.-+.+..+|+.++.
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSFKGKQYIG 523 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc-EeeeEEEEECCEEEEE
Confidence 34667778999999998875 99999888765431 1123456678876554
No 283
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.31 E-value=1.4 Score=47.02 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=38.0
Q ss_pred CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCC
Q psy1242 472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHND 534 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~ 534 (540)
+|.|..++. +|+.+.++..... +.+..+...+..++. ..++.|+.+|.. |+.+-.+....
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 466777765 7888777654332 233333334444444 568999999976 99888776443
No 284
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.19 E-value=1.6 Score=47.16 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=98.2
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...+++.+.+..|+.+-...+.|+.++.+.......+ .........+++.+. .++..++-+.
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~---------------~~~~~~p~GlAvD~~---~~~lY~tD~~ 412 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV---------------TAQIAHPDGIAVDWV---ARNLYWTDTG 412 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE---------------ECCCCCcCceEEecc---cCcEEEEeCC
Confidence 5677788866667777666788888888743333233 233356678888862 4555666667
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA 495 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~ 495 (540)
.++|.+-+++.. ....+ .+.-....+|++.|....|..... .+.|.....+|.....+.... -.
T Consensus 413 ~~~I~v~~~~G~------------~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-l~ 479 (619)
T 3s94_A 413 TDRIEVTRLNGT------------MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTS-LG 479 (619)
T ss_dssp TTEEEEEETTSC------------SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CS
T ss_pred CCcEEEEeCCCC------------eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCC-CC
Confidence 789999887652 12233 233456789999997444444332 244544455665444443221 12
Q ss_pred CceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242 496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR 528 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~ 528 (540)
.+..|++.+++..|..+ ..+.|..++++|....
T Consensus 480 ~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~ 514 (619)
T 3s94_A 480 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR 514 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred CCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence 57899999877666654 4578999998876443
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.11 E-value=0.54 Score=49.29 Aligned_cols=166 Identities=8% Similarity=-0.033 Sum_probs=99.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEcc-------CCeE-----------EEEEecccceeeeeeEEEeeccCcceEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTD-------NARI-----------VQIIFGHYGVVTSRIVQIIFGHYGVVTCL 400 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~-------~g~~-----------~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l 400 (540)
...++++|++.+|+++-..++.|..+|+. ++.. ...+ .. .+....-..|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l------------~~-~~~~~~p~~i 315 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQL------------FT-IADPSWEFQI 315 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEE------------EE-CSSSSCCEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccccee------------Ee-cCCCCCceEE
Confidence 45667889766688888888999999987 5553 1122 00 1223446789
Q ss_pred EeccCccCCCcE-EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEE-EEEEc---
Q psy1242 401 SRSECNITADCF-IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVT-SVAIS--- 460 (540)
Q Consensus 401 ~~sp~~~~dg~~-l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~-~v~~s--- 460 (540)
+|+| +|+. .++-+....|+.++.+....... ...++.+. -..-. .++..
T Consensus 316 a~~p----~G~~lYvaD~~~h~I~kid~dg~~~~~~-------~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~ 384 (496)
T 3kya_A 316 FIHP----TGKYAYFGVINNHYFMRSDYDEIKKEFI-------TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPD 384 (496)
T ss_dssp EECT----TSSEEEEEETTTTEEEEEEEETTTTEEC-------CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTT
T ss_pred EEcC----CCCEEEEEeCCCCEEEEEecCCCcceec-------ccEEecCCCCCCcccCCcccccccCCCeEEEEEcccc
Confidence 9999 8985 45555678888877654221100 00111110 11233 45554
Q ss_pred ----CCCCEEEEEeCCCcEEEEeCCCcEEEEecCC--------------CC--------CCCceEEEEeeC-CCEEEE-e
Q psy1242 461 ----AELGLVVSGSQLGPVLVHTTFGDLLRSLDPP--------------SG--------FASPESVVMSRE-GVIVVN-Y 512 (540)
Q Consensus 461 ----pdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~--------------~~--------~~~v~~l~fspd-g~~l~s-~ 512 (540)
+++.++++-+....|+..+.+|.. .++.+. .. ...+..|++.++ |.+.++ .
T Consensus 385 ~~~~~~g~lyVaD~~N~rIr~i~~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~ 463 (496)
T 3kya_A 385 YTGEEEYDFYFVDRLNFCVRKVTPEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ 463 (496)
T ss_dssp CCSSCCEEEEEEEGGGTEEEEECTTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET
T ss_pred ccccCCCeEEEEECCCCEEEEEeCCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC
Confidence 566677776777788888777854 444321 00 114678999997 766555 4
Q ss_pred cCCeEEEEecCCcEEEe
Q psy1242 513 ERGHIAAFTMNGNRLRH 529 (540)
Q Consensus 513 ~dg~I~lw~~~g~~l~~ 529 (540)
..++|+.+++++..-..
T Consensus 464 ~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 464 VGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTEEEEEEECCCC---
T ss_pred CCCEEEEEECCCCcccc
Confidence 56889999998765443
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.08 E-value=1.5 Score=43.63 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=87.0
Q ss_pred EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc---EEEEEeC---CCcEEE
Q psy1242 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC---FIASGSA---DCTVLL 424 (540)
Q Consensus 351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~---~l~sgs~---DgtV~l 424 (540)
++++....+-+.+||+ +|+.++.+ .. +.++.|..-|.+.-.|+ ++++... +.+|++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~---------------~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSY---------------NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEE---------------CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEc---------------cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 3455556788999999 69998888 32 45666665551000222 2333333 579999
Q ss_pred EEcCCCcccccCCCCCCcceEEecc------CC-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeC--------CCcEE
Q psy1242 425 WHWNARTQSIVGETDTPTPRATLTG------HE-QPVTSVAI--SAE-LG-LVVSGSQLGPVLVHTT--------FGDLL 485 (540)
Q Consensus 425 Wd~~~~~~~~~~~~~~~~~~~~l~~------h~-~~V~~v~~--spd-g~-~lasgs~Dg~v~iw~~--------~g~~~ 485 (540)
++++.... .+..+.. .. ..+..+|+ +|. +. +++....+|.+..|.. +++++
T Consensus 104 f~iDp~~~----------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 104 YAIDGKNG----------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp EEECTTTC----------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE
T ss_pred EEECCCCC----------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE
Confidence 98753221 1222211 11 45666777 774 44 5777778898877622 34678
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEEecC-CeEEEEecC
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVNYER-GHIAAFTMN 523 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s~~d-g~I~lw~~~ 523 (540)
+++.... .+..++..+....|+.+.. .-|..++.+
T Consensus 174 R~f~lgs---q~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 174 RAFKMNS---QTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEECSS---CEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred EEecCCC---CcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 8887764 5788999988777777654 445555633
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.07 E-value=0.085 Score=58.24 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=91.6
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA- 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~- 418 (540)
..+++.+.+..|+++-...+.|.+.++.... ...+. .........|+++| .+.+|+.+..
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~--------------~~~~~~P~giavDp----~~g~ly~td~~ 516 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------REQGSKPRAIVVDP----VHGFMYWTDWG 516 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC--------------CCSSCCCCCEECCS----SSSCCEECCCS
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE--------------eCCCCCcceEEEcc----CCCcEEEcccC
Confidence 3456665555566776667889999987443 33330 22234467889998 5554444432
Q ss_pred C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcEEEEecCC-CCC
Q psy1242 419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTTFGDLLRSLDPP-SGF 494 (540)
Q Consensus 419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~~g~~~~~l~~~-~~~ 494 (540)
. +.|.+.++.... ...+ ...-.....|+|+|++. ++++-+..+.|...+.+|...+.+... ...
T Consensus 517 ~~~~I~~~~~dG~~------------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 584 (699)
T 1n7d_A 517 TPAKIKKGGLNGVD------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584 (699)
T ss_dssp SSCCEEBCCSSSCC------------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred CCCeEEEEeCCCCC------------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence 2 567766654321 1122 12223456799998765 445555667787777766555544322 111
Q ss_pred CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEeee
Q psy1242 495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHES 531 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~~ 531 (540)
..+..|++..+ .++++ ...+.|..++. +|+.+..+.
T Consensus 585 ~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 585 AHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 13456777554 33333 45688999997 477766653
No 288
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=1.3 Score=49.04 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=94.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.++...++|. | -.|..++-+..++..+++.. .+... ......|.++...+ +|...+ |+.
T Consensus 409 v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~-~~~~~------------~~~~~~v~~i~~d~----~g~lwi-gt~ 468 (781)
T 3v9f_A 409 VLCSLKDSEGN-L-WFGTYLGNISYYNTRLKKFQ-IIELE------------KNELLDVRVFYEDK----NKKIWI-GTH 468 (781)
T ss_dssp EEEEEECTTSC-E-EEEETTEEEEEECSSSCEEE-ECCST------------TTCCCCEEEEEECT----TSEEEE-EET
T ss_pred eEEEEECCCCC-E-EEEeccCCEEEEcCCCCcEE-EeccC------------CCCCCeEEEEEECC----CCCEEE-EEC
Confidence 56666677787 3 45666677888988776543 22000 01345788998887 675444 555
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC--
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG-- 493 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~-- 493 (540)
+-+.+++..+..-. ...... .....|.++...++|.+.+....+| +..++........+....+
T Consensus 469 -~Gl~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~ 537 (781)
T 3v9f_A 469 -AGVFVIDLASKKVI---------HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFC 537 (781)
T ss_dssp -TEEEEEESSSSSCC---------EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCS
T ss_pred -CceEEEeCCCCeEE---------ecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCC
Confidence 55777886542211 111000 1146799999999888665544455 4445554444444432221
Q ss_pred CCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242 494 FASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~ 530 (540)
...|.++...++|.+.++..+|.|..|+..++.+..+
T Consensus 538 ~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 538 SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVF 574 (781)
T ss_dssp CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEE
T ss_pred CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEc
Confidence 1157888888899877776655558888775444443
No 289
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.03 E-value=1 Score=49.98 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=94.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.++...++|. |-.|..++-|.+++..+++... +.. . -......|.++...+ +|.+. .|+.
T Consensus 365 v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~-~----------~~~~~~~v~~i~~d~----~g~lW-igt~ 425 (781)
T 3v9f_A 365 VSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIY-NKE-N----------RELLSNSVLCSLKDS----EGNLW-FGTY 425 (781)
T ss_dssp EEEEEECTTSC--EEEEEBSSCEEEEETTEEEEEC-C----------------CCCSBEEEEEECT----TSCEE-EEET
T ss_pred eEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEE-ccC-C----------CCCCCcceEEEEECC----CCCEE-EEec
Confidence 56676677787 3566666778889876543221 100 0 012346789998887 66544 4676
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCC---
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPS--- 492 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~--- 492 (540)
++-+..++..+.. ...+. .....|.++...+++.+.+ |+..|..++...+++.........
T Consensus 426 ~~Gl~~~~~~~~~------------~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 426 LGNISYYNTRLKK------------FQIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp TEEEEEECSSSCE------------EEECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSC
T ss_pred cCCEEEEcCCCCc------------EEEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCccccc
Confidence 6678888765421 12221 1346789999888887554 444554344333444433222110
Q ss_pred CCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242 493 GFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES 531 (540)
Q Consensus 493 ~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~ 531 (540)
....|.+++..++|.+.++..++-|..|+.+++.+..+.
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 531 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFN 531 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEEC
T ss_pred ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEcc
Confidence 012578899999999877765455788888766655543
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.02 E-value=1.6 Score=48.68 Aligned_cols=159 Identities=10% Similarity=-0.029 Sum_probs=94.5
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA- 418 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~- 418 (540)
..+++.+.++.|+++-...+.|.+.+++... ...+. .........|+++| .+..|+.+..
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~--------------~~~l~~P~gIaVDp----~~g~LYwtD~g 534 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------RENGSKPRAIVVDP----VHGFMYWTDWG 534 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE--------------ECTTCCEEEEEEET----TTTEEEEEECS
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE--------------eCCCCCcceEEEec----CCCCEEEecCC
Confidence 4567788887788888888899999987443 33330 33445688999998 5445554443
Q ss_pred C-CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecC-CCCCC
Q psy1242 419 D-CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDP-PSGFA 495 (540)
Q Consensus 419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~-~~~~~ 495 (540)
. +.|...+++... ....+...-.....|++++....|..+. ..+.|...+.+|..++.+.. .....
T Consensus 535 ~~~~I~~~~~dG~~-----------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~ 603 (791)
T 3m0c_C 535 TPAKIKKGGLNGVD-----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 603 (791)
T ss_dssp SSCEEEEEETTSCC-----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred CCCeEEEEecCCCc-----------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccC
Confidence 3 677777765421 1222233345788999998766665554 45567666676665544432 22211
Q ss_pred CceEEEEeeCCCEEEE--ecCCeEEEEec-CCcEEEee
Q psy1242 496 SPESVVMSREGVIVVN--YERGHIAAFTM-NGNRLRHE 530 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s--~~dg~I~lw~~-~g~~l~~~ 530 (540)
.+.+|++. +..|+. ...+.|...+. +|+.+..+
T Consensus 604 ~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 604 HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 34566663 334443 34577877774 46544433
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.94 E-value=1.4 Score=43.19 Aligned_cols=152 Identities=6% Similarity=-0.063 Sum_probs=85.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
...+++.++++ +++.+. +|.+..-+-..|+.-..+. ......+..+++.+ ++..+ .++.
T Consensus 165 ~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~--------------~~~~~~~~~~~~~~----~g~~~-~~~~ 223 (327)
T 2xbg_A 165 MRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN--------------RTTSRRLHNMGFTP----DGRLW-MIVN 223 (327)
T ss_dssp EEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE--------------CCSSSCEEEEEECT----TSCEE-EEET
T ss_pred eEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC--------------CCCCCccceeEECC----CCCEE-EEeC
Confidence 45677788888 456554 4544332211133332221 23456788889988 77655 4556
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC---CCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP---PSGF 494 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~---~~~~ 494 (540)
+|.+.+.+.+... . .+.+..- ..+...+.++++.+++.+++++. +|.+..-...|+.-..+.. ...
T Consensus 224 ~G~~~~s~~D~G~-t-------W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~- 293 (327)
T 2xbg_A 224 GGKIAFSDPDNSE-N-------WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQDGGQTWQQDVDVKKVPS- 293 (327)
T ss_dssp TTEEEEEETTEEE-E-------ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEESSTTSSCEECGGGTTSSS-
T ss_pred CceEEEecCCCCC-e-------eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeCCCCcccEEcCccCCCCC-
Confidence 7888776422110 0 0000000 01223588899998887766654 6777443333443333332 122
Q ss_pred CCceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242 495 ASPESVVMSREGVIVVNYERGHIAAFTM 522 (540)
Q Consensus 495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~ 522 (540)
.+.++.|.+++.++++|.+|.|.-++-
T Consensus 294 -~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 294 -NFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp -CCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred -CeEEEEEECCCceEEEcCCceEEEEcC
Confidence 468899988888888898998776653
No 292
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.92 E-value=2.3 Score=45.62 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=38.3
Q ss_pred CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCc
Q psy1242 472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDN 535 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~ 535 (540)
+|.|..|+. +|+.+.+...... +..-.....|.+|+. ..|+.++.||.+ |+.|-.+.....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 566777765 8888766654322 222222234555555 468999999986 999887764443
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.91 E-value=2.2 Score=46.16 Aligned_cols=166 Identities=9% Similarity=-0.062 Sum_probs=99.5
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEe
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGS 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs 417 (540)
...+++.+....|+.+-...+.|+.++.+.......+..... .......+..|++.. .++ +..+.+
T Consensus 342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~---------~~~~~~~p~glAvD~----~~~nLY~td~ 408 (628)
T 4a0p_A 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP---------SQNLEIQPYDLSIDI----YSRYIYWTCE 408 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------CCCEEEEEEET----TTTEEEEEET
T ss_pred ceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc---------cccccCCcceEEeec----cCCeEEEEcC
Confidence 566778887776777766677788887764332222300000 001234678899987 544 555666
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcC-CCCEEEEEeCCC--cEEEEeCCCcEEEEecCCCC
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISA-ELGLVVSGSQLG--PVLVHTTFGDLLRSLDPPSG 493 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~sp-dg~~lasgs~Dg--~v~iw~~~g~~~~~l~~~~~ 493 (540)
..++|.+-+++. +....+ ........+|++.| .|.++.+-.... .|.....+|.....+....-
T Consensus 409 ~~~~I~v~~~~G------------~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l 476 (628)
T 4a0p_A 409 ATNVINVTRLDG------------RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL 476 (628)
T ss_dssp TTTEEEEEETTS------------CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSC
T ss_pred CCCEEEEEECCC------------CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccC
Confidence 788898888764 222233 33445688999999 555555543332 34334556765554433221
Q ss_pred CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242 494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE 530 (540)
Q Consensus 494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~ 530 (540)
..+..|++.++++.|..+ ..+.|..++++|.....+
T Consensus 477 -~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~ 514 (628)
T 4a0p_A 477 -SKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 514 (628)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEE
Confidence 157899999987766654 357899999987654443
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.81 E-value=2.9 Score=40.88 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=85.8
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D 419 (540)
..+++.++++ +++++. ++.|.. ..+.|+.-..+. .++...+..+++.+ ++.+++.+...
T Consensus 125 ~~i~~~~~~~-~~~~~~-~g~v~~-S~DgG~tW~~~~--------------~~~~~~~~~~~~~~----~~~~~~~g~~G 183 (327)
T 2xbg_A 125 RLIKALGNGS-AEMITN-VGAIYR-TKDSGKNWQALV--------------QEAIGVMRNLNRSP----SGEYVAVSSRG 183 (327)
T ss_dssp EEEEEEETTE-EEEEET-TCCEEE-ESSTTSSEEEEE--------------CSCCCCEEEEEECT----TSCEEEEETTS
T ss_pred EEEEEECCCC-EEEEeC-CccEEE-EcCCCCCCEEee--------------cCCCcceEEEEEcC----CCcEEEEECCC
Confidence 4455566666 456553 554422 233455444431 34456788999998 88877766544
Q ss_pred CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcEEEEecCC--CCCCC
Q psy1242 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GDLLRSLDPP--SGFAS 496 (540)
Q Consensus 420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~~~~~l~~~--~~~~~ 496 (540)
+..+-+|-.... .+.+ -......+..+++.+++.+++ ++.+|.+++...+ |+.-..+..+ .....
T Consensus 184 ~~~~S~d~gG~t---------W~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 184 SFYSTWEPGQTA---------WEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp SEEEEECTTCSS---------CEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred cEEEEeCCCCCc---------eeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 434444421111 1122 123456788899999887664 4557877766433 4433333322 11114
Q ss_pred ceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242 497 PESVVMSREGVIVVNYERGHIAAFTMN 523 (540)
Q Consensus 497 v~~l~fspdg~~l~s~~dg~I~lw~~~ 523 (540)
+.++++.+++.+++++.++.| .++.+
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~D 277 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQD 277 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESS
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCC
Confidence 678899988998888888877 44555
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.28 E-value=3.7 Score=44.08 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecC
Q psy1242 472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHN 533 (540)
Q Consensus 472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~ 533 (540)
+|.+.-|+. +|+.+....... +...-.+...|.+|+. ..|+.++.||.+ |+.|-+....
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 356666665 788776664322 1122122334555554 468999999976 8888776533
No 296
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.15 E-value=0.68 Score=49.73 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEE
Q psy1242 462 ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVV 510 (540)
Q Consensus 462 dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~ 510 (540)
.+.+++.|+.||.++.++. +|+.+..++...+. .-.-+.+..+|+..+
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGEQYL 544 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc-ccCceEEEECCEEEE
Confidence 4678888999999999875 99999988876541 122367778887443
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.14 E-value=1.8 Score=43.22 Aligned_cols=145 Identities=9% Similarity=0.005 Sum_probs=79.2
Q ss_pred cCCcEEEEEccC--CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc--EEEEEeC--CCcEEEEEcCCC
Q psy1242 357 WDNSFRVFSTDN--ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC--FIASGSA--DCTVLLWHWNAR 430 (540)
Q Consensus 357 ~Dgsv~iwd~~~--g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~--~l~sgs~--DgtV~lWd~~~~ 430 (540)
.+|.|.++|.++ ++. ..+..... .+.........|.+.+. .+|. ++++-.. +.+|.+|+++..
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~--------~~~~~~f~PhGi~~~~d--~dg~~~L~Vvnh~~~~s~ielf~~d~~ 149 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGN--------TLDISSFNPHGISTFID--DDNTVYLLVVNHPGSSSTVEVFKFQEE 149 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECS--------SCCGGGCCEEEEEEEEC--TTCCEEEEEEECSTTCCEEEEEEEETT
T ss_pred CCCeEEEEecCCCCCce-EEEEccCC--------CCCcCceeeeeeEEEEC--CCCcEEEEEEECCCCCCeEEEEEEECC
Confidence 688999999873 332 22210000 00112335566666541 0242 3344333 678899988753
Q ss_pred cccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeC---C--------------CcEEEEeCCCcEEEEecCCC
Q psy1242 431 TQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQ---L--------------GPVLVHTTFGDLLRSLDPPS 492 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~---D--------------g~v~iw~~~g~~~~~l~~~~ 492 (540)
... ...+..+.+. -...+.+++.++|.+.++... | |.|.-++. ++......+ -
T Consensus 150 ~~~-------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~~~~~~~~-l 220 (355)
T 3sre_A 150 EKS-------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEG-F 220 (355)
T ss_dssp TTE-------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TCCEEEEEE-E
T ss_pred CCE-------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-CeEEEeecC-C
Confidence 221 1234444443 236789999999988777641 1 23322333 222222211 1
Q ss_pred CCCCceEEEEeeCCCEEEEec--CCeEEEEecC
Q psy1242 493 GFASPESVVMSREGVIVVNYE--RGHIAAFTMN 523 (540)
Q Consensus 493 ~~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~ 523 (540)
. ..+.++|||||+.|+.++ .++|..|+++
T Consensus 221 ~--~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 221 D--FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp S--SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred c--ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 1 468999999999887753 6889999986
No 298
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.83 E-value=1.1 Score=49.06 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=88.8
Q ss_pred EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE-EEeccCccCCCcEEEEEeC------CCcEEE
Q psy1242 352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC-LSRSECNITADCFIASGSA------DCTVLL 424 (540)
Q Consensus 352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~-l~~sp~~~~dg~~l~sgs~------DgtV~l 424 (540)
++.++.|+.|..+|..+|+.+........ .....+++ ..+. ++ .++.++. ++.|..
T Consensus 120 v~v~~~dg~l~alD~~tG~~~W~~~~~~~-----------~~~~~~~~~P~v~-----~~-~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDP-----------AKPYSITGAPRVV-----KG-KVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSCT-----------TSSCBCCSCCEEE-----TT-EEEECCBCTTTCCBCEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEeeeeccCCC-----------CCcceecCCCEEE-----CC-EEEEeCCCCCcCCCCEEEE
Confidence 56677899999999999999877632100 00011111 0111 34 3444432 578888
Q ss_pred EEcCCCcccccCCCCCCcceE------------Ee--------ccCCCCEEEEEEcCCCCEEEEEeCCCc----------
Q psy1242 425 WHWNARTQSIVGETDTPTPRA------------TL--------TGHEQPVTSVAISAELGLVVSGSQLGP---------- 474 (540)
Q Consensus 425 Wd~~~~~~~~~~~~~~~~~~~------------~l--------~~h~~~V~~v~~spdg~~lasgs~Dg~---------- 474 (540)
+|..+++...........+.. +. .++......+++.++..+++.++.++.
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 887764422110000000000 00 011122235688888888888887763
Q ss_pred ---------EEEEe-CCCcEEEEecCC--CCC-----CCceEEEEeeCCC---EEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242 475 ---------VLVHT-TFGDLLRSLDPP--SGF-----ASPESVVMSREGV---IVVN-YERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 475 ---------v~iw~-~~g~~~~~l~~~--~~~-----~~v~~l~fspdg~---~l~s-~~dg~I~lw~~~-g~~l~~~~ 531 (540)
|..++ .+|+.+..++.. ..+ .++....+..+|+ .|+. ..+|.++++|.. |+++....
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 65565 489988777642 211 1223333445776 4555 468999999976 88885443
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.55 E-value=3 Score=42.56 Aligned_cols=147 Identities=7% Similarity=0.044 Sum_probs=87.5
Q ss_pred EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec--cCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242 344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG--HYGVVTCLSRSECNITADCFIASGSADCT 421 (540)
Q Consensus 344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~--h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt 421 (540)
.+.+|..++++- ++.||.-++..+..-+.+.. .. --+.|..+..+| +|++|+..+ +.+
T Consensus 28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~-------------~~~i~f~~i~qlvlSp----sG~lLAl~g-~~~ 87 (452)
T 3pbp_A 28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNF-------------SRHLVLDDTFHVISST----SGDLLCLFN-DNE 87 (452)
T ss_dssp EETTTTEEEEEE--TTEEEEEETTTCSSCEEEEC-------------TTTCCCCTTCEEEECT----TSSEEEEEC-SSE
T ss_pred EEcCCCEEEEEE--CCEEEEEECCCCCcceEEec-------------CcccccCceeEEEECC----CCCEEEEec-CCe
Confidence 456777754443 68999888875443444410 11 123577899999 999998775 568
Q ss_pred EEEEEcCCCcccccCCCC-CCcceEEecc------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC---cEEEEe
Q psy1242 422 VLLWHWNARTQSIVGETD-TPTPRATLTG------HEQPVTSVAISAE---LGLVVSGSQLGPVLVHTTFG---DLLRSL 488 (540)
Q Consensus 422 V~lWd~~~~~~~~~~~~~-~~~~~~~l~~------h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~~g---~~~~~l 488 (540)
|.|-.+............ ..-..+.+.- ...+|..+.|+|- +..|++-..|++|++|+.+. ++. .+
T Consensus 88 V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L 166 (452)
T 3pbp_A 88 IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VL 166 (452)
T ss_dssp EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EE
T ss_pred EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-ch
Confidence 888887632211100000 0001122211 2567999999995 46899999999999997632 222 44
Q ss_pred cCCCC-------CCCceEEEEeeCCCEEEE
Q psy1242 489 DPPSG-------FASPESVVMSREGVIVVN 511 (540)
Q Consensus 489 ~~~~~-------~~~v~~l~fspdg~~l~s 511 (540)
..... ...|.+++|+.+|-.|..
T Consensus 167 ~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 167 NKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp SCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred hccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 32111 025678888886654443
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.31 E-value=7.1 Score=38.86 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=82.5
Q ss_pred CCC-EEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEeccCccCCCcEEEEEeC---C
Q psy1242 347 DSR-FLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSRSECNITADCFIASGSA---D 419 (540)
Q Consensus 347 dg~-~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~sp~~~~dg~~l~sgs~---D 419 (540)
+|+ +|+++-.. +.++.+|+++.+.....+ +.++.+. -...+.+++.+ +|.+.++... |
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~-----------~~~~~g~~~~~pND~~v~~----~G~fyvt~~~~ftd 188 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH-----------LKTIRHKLLPSVNDIVAVG----PEHFYATNDHYFID 188 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEE-----------EEEECCTTCSSEEEEEEEE----TTEEEEEESCSCSS
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEE-----------EeccccCCCCCCceEEEeC----CCCEEecCCcEeCC
Confidence 454 46666554 567888877653221111 1112322 24578899999 8987777641 1
Q ss_pred ------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCcE
Q psy1242 420 ------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT--FGDL 484 (540)
Q Consensus 420 ------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~--~g~~ 484 (540)
..-.||.++.. + +..+...-..-+.++||||++.+..+. ..+.|..++. +|.+
T Consensus 189 ~~~~~~e~~~~~~~g~vyr~d~~-----------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l 256 (355)
T 3sre_A 189 PYLKSWEMHLGLAWSFVTYYSPN-----------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL 256 (355)
T ss_dssp HHHHHHHHHTTCCCEEEEEECTT-----------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred cccccchhhccCCccEEEEEECC-----------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence 23344544331 1 222222334568999999998766554 5677766543 4543
Q ss_pred --EEEecCCCCCCCceEEEEee-CCCEEEEe--cCCeEEEEecC
Q psy1242 485 --LRSLDPPSGFASPESVVMSR-EGVIVVNY--ERGHIAAFTMN 523 (540)
Q Consensus 485 --~~~l~~~~~~~~v~~l~fsp-dg~~l~s~--~dg~I~lw~~~ 523 (540)
.+.+.. .+ .+..+++.+ +|.+.+++ ..++|..|+++
T Consensus 257 ~~~~~~~~-~g--~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 257 TPLRVLSF-DT--LVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEEEC-SS--EEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ecCEEEeC-CC--CCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 234422 22 568899999 59877753 22345555554
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.28 E-value=0.66 Score=47.44 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=72.5
Q ss_pred EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee------ccCcceEEEEeccCccCCCcEEEE
Q psy1242 342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF------GHYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~------~h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
+..||+|++| |.. .+..|.|-.+..+.....-.+-...+. .+.+. .....|..+.|+|... .|..|++
T Consensus 71 lvlSpsG~lL-Al~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q---~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVV 144 (452)
T 3pbp_A 71 VISSTSGDLL-CLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQ---IFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVV 144 (452)
T ss_dssp EEECTTSSEE-EEE-CSSEEEEEECCTTCSCCCCHHHHHTTE---EEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEE
T ss_pred EEECCCCCEE-EEe-cCCeEEEEEecCccccCcccccccccc---eeEEEcCCcccCCCCceeEEEeccccC-CCCeEEE
Confidence 5679999964 443 367888888774321100000000000 01111 1357799999999432 4568899
Q ss_pred EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEE
Q psy1242 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVL 476 (540)
Q Consensus 416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~ 476 (540)
-..|++|++||+......+. .-........+......|.+++|..++-.|...+ ++|.|.
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 99999999999986221110 0000001112233446899999999876665544 788874
No 302
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.45 E-value=3.5 Score=42.64 Aligned_cols=119 Identities=8% Similarity=0.041 Sum_probs=58.6
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS- 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs- 417 (540)
...+++.|+|+ |+++-...+.|++++..+++....... ...+ ......+....|+|+|.... +..|..+.
T Consensus 29 P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~-~~~~------~~~~g~~Gllgia~~Pdf~~-~g~lYv~~s 99 (454)
T 1cru_A 29 PHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQV-PEIV------NDADGQNGLLGFAFHPDFKN-NPYIYISGT 99 (454)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-TTCC------CCTTSSCSEEEEEECTTTTT-SCEEEEEEE
T ss_pred ceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecC-Cccc------cccCCCCceeEEEECCCcCc-CCEEEEEEe
Confidence 45778899998 556554334688887655553322100 0000 00013466789999992211 44444333
Q ss_pred C------------CCcEEEEEcCCCcccccCCCCCCcce-EEec-cCCCCEEEEEEcCCCCEEEEEe
Q psy1242 418 A------------DCTVLLWHWNARTQSIVGETDTPTPR-ATLT-GHEQPVTSVAISAELGLVVSGS 470 (540)
Q Consensus 418 ~------------DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~-~h~~~V~~v~~spdg~~lasgs 470 (540)
. ...|.-++........ . ..+.+ ..+. +.......|+|.|||.+.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~-~---~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTL-E---KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEE-E---EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCc-C---CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2 1244444443211110 0 00111 1122 1123468899999999777654
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.19 E-value=8.7 Score=44.69 Aligned_cols=133 Identities=11% Similarity=0.128 Sum_probs=74.2
Q ss_pred CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCC
Q psy1242 358 DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE 437 (540)
Q Consensus 358 Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~ 437 (540)
.|.|.++++..++.....+ ....+.|++++-- .|. |++|- ..+|++|++...+
T Consensus 863 ~Gri~vf~v~~~kL~lv~~--------------~~v~g~v~al~~~-----~g~-Lla~i-g~~l~vy~l~~~~------ 915 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAE--------------KEVKGAVYSMVEF-----NGK-LLASI-NSTVRLYEWTTEK------ 915 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEE--------------EEESSCEEEEEEE-----TTE-EEEEE-TTEEEEEEECTTS------
T ss_pred ceEEEEEEEECCEEEEEEE--------------EEcCCcCEEEeee-----CCE-EEEEc-CCEEEEEECCCCc------
Confidence 4678888887544322211 2346789988754 464 44433 4799999986521
Q ss_pred CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE--EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCC
Q psy1242 438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV--HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG 515 (540)
Q Consensus 438 ~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i--w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg 515 (540)
.+..-..+-..|..+.+...+.+++.|..-..|.+ |......+..+........++++.|-.++.++++-.+|
T Consensus 916 -----~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~g 990 (1158)
T 3ei3_A 916 -----ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF 990 (1158)
T ss_dssp -----CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTS
T ss_pred -----eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCC
Confidence 11110111111223333335678888887666655 55533333333222222257888887777666555578
Q ss_pred eEEEEec
Q psy1242 516 HIAAFTM 522 (540)
Q Consensus 516 ~I~lw~~ 522 (540)
.|.+...
T Consensus 991 Nl~vl~~ 997 (1158)
T 3ei3_A 991 NLFVCQK 997 (1158)
T ss_dssp EEEEEEE
T ss_pred cEEEEec
Confidence 8888754
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.08 E-value=10 Score=37.61 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=79.7
Q ss_pred ceEEEEe--ccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242 396 VVTCLSR--SECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL 472 (540)
Q Consensus 396 ~Vt~l~~--sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D 472 (540)
.+-.+++ +|. .+. +++....+|.+..|++...... ....+.++.+.- .+.+-.|...++...|..+-.+
T Consensus 129 ~pyGlcly~~~~---~g~~yafV~~k~G~~~q~~l~~~~~g----~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 129 EVYGFTLYHSQK---TGKYYAMVTGKEGEFEQYELKADKNG----YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp SCCCEEEEECTT---TCCEEEEEECSSSEEEEEEEEECTTS----CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT
T ss_pred CeeEEEEEecCC---CCcEEEEEECCCCeEEEEEEEeCCCC----cccceEEEEecC-CCCcceEEEcCCCCeEEEeccc
Confidence 4445565 662 343 6788888999999998532110 011345666643 4578888899988899999988
Q ss_pred CcEEEEeC------CCcEEEEecCCCCCCCceEEEEe--eCCC-EEEEe--cCCeEEEEecC--CcEEEeee
Q psy1242 473 GPVLVHTT------FGDLLRSLDPPSGFASPESVVMS--REGV-IVVNY--ERGHIAAFTMN--GNRLRHES 531 (540)
Q Consensus 473 g~v~iw~~------~g~~~~~l~~~~~~~~v~~l~fs--pdg~-~l~s~--~dg~I~lw~~~--g~~l~~~~ 531 (540)
.-|..++. +++.+..+....-...+..|++- ++|+ +|+++ .+++..+|+.+ .+.+..+.
T Consensus 201 ~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 201 EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 65533342 24566555322111157888884 5555 55554 36789999986 56777764
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.68 E-value=2.6 Score=41.93 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=75.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC----CcEEE
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA----DCFIA 414 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d----g~~l~ 414 (540)
...+++.|+|+ |+++ ..+|.|++++ .+++ ..+..-. ...........|+++| + +...+
T Consensus 31 P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~--~~~~~~~---------v~~~g~~g~~gia~~p----df~~~g~lyv 92 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK--KLVASFD---------VANVGEAGLLGLALHP----EFPKKSWVYL 92 (354)
T ss_dssp EEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE--EEEEECC---------CCCSTTCSEEEEEECT----TTTTSCEEEE
T ss_pred CeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc--eEeeccc---------eeecCCCceeeEEeCC----CCCcCCEEEE
Confidence 45678899998 5555 4569999887 3455 2221000 0012245688999999 6 44444
Q ss_pred EEeC---C----CcEEEEEcCCCcccccCCCCCCcc-eEEecc-CCCCEEEEEEcCCCCEEEEEeCC-------------
Q psy1242 415 SGSA---D----CTVLLWHWNARTQSIVGETDTPTP-RATLTG-HEQPVTSVAISAELGLVVSGSQL------------- 472 (540)
Q Consensus 415 sgs~---D----gtV~lWd~~~~~~~~~~~~~~~~~-~~~l~~-h~~~V~~v~~spdg~~lasgs~D------------- 472 (540)
+-+. + ..|..++........ . ..+. +..+.. .......++|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKL-K---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCE-E---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCS
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCc-C---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCC
Confidence 4332 3 456666654321000 0 0011 111221 11123568999999877764321
Q ss_pred CcEEEEeCCCc----------EEEEecCCCCCCCceEEEEee-CCCEEEE
Q psy1242 473 GPVLVHTTFGD----------LLRSLDPPSGFASPESVVMSR-EGVIVVN 511 (540)
Q Consensus 473 g~v~iw~~~g~----------~~~~l~~~~~~~~v~~l~fsp-dg~~l~s 511 (540)
|.|.-.+.+|+ .+.. .++. .+..++|+| +|.+.++
T Consensus 169 G~I~ri~~dG~~p~~npf~~~~i~a-~G~r---np~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 169 GKILRVDEEGRPPADNPFPNSPIWS-YGHR---NPQGIDWHRASGVMVAT 214 (354)
T ss_dssp SEEEEECTTSCCCTTSSSTTCCEEE-ECCS---CCCEEEECTTTCCEEEE
T ss_pred eEEEEEcCCCCCCCCCCCCCCcEEE-EccC---CcceEEEeCCCCCEEEE
Confidence 33433333443 1111 1222 357899999 6776665
No 306
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.65 E-value=2 Score=46.15 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242 462 ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV 509 (540)
Q Consensus 462 dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l 509 (540)
.+.+++.++.||.++.++. +|+.+.+++.+.+. ...-+.+..+|+..
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQY 530 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEE
Confidence 5677888999999998875 99999888766542 12335667788743
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.27 E-value=2.7 Score=41.77 Aligned_cols=108 Identities=10% Similarity=0.021 Sum_probs=58.0
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC---CcEE-E
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA---DCFI-A 414 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d---g~~l-~ 414 (540)
...+++.|+|+ ++++ ..+|.|++++ +++.. .+..-. ...........|+++| + +..| +
T Consensus 33 P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~-~~~~~~---------v~~~g~~~p~gia~~p----df~~~g~lYv 94 (352)
T 2ism_A 33 PWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLS-TYAELS---------VYHRGESGLLGLALHP----RFPQEPYVYA 94 (352)
T ss_dssp EEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEE-EEEECC---------CCCSTTCSEEEEEECT----TTTTSCEEEE
T ss_pred ceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCcc-Eeecce---------EeecCCCCceeEEECC----CCCCCCEEEE
Confidence 45778899998 4555 4569999988 45422 220000 0012245688999999 7 3444 4
Q ss_pred EEeCC-----CcEEEEEcCCCcccccCCCCCCc-ceEEec---cCCCCEEEEEEcCCCCEEEEEe
Q psy1242 415 SGSAD-----CTVLLWHWNARTQSIVGETDTPT-PRATLT---GHEQPVTSVAISAELGLVVSGS 470 (540)
Q Consensus 415 sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~-~~~~l~---~h~~~V~~v~~spdg~~lasgs 470 (540)
+-... ..|..++....... ..+ .+..+. +.......++|.|||.+.++.+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~------~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGV------LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEE------EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEecCCCCCccEEEEEEeCCCCcC------ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 43332 56777776531100 001 112232 1111235799999998766643
No 308
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.00 E-value=2.4 Score=45.94 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=66.3
Q ss_pred EEEEec-CCCEEEEEEecCC-----------cEEEEEccCCeEEE--EEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242 341 CFVTTV-DSRFLLACGFWDN-----------SFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406 (540)
Q Consensus 341 ~~~~sp-dg~~llasgs~Dg-----------sv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~ 406 (540)
..++.+ +|+ |++.|+.++ .+.+||..+++... .+. ..+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--------------~~~~~~~~~~~~~~-- 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--------------TKHDMFCPGISMDG-- 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--------------CSCCCSSCEEEECT--
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--------------CCCCCccccccCCC--
Confidence 345567 666 677776543 57889988775322 120 12333344566667
Q ss_pred cCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEe
Q psy1242 407 ITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QL-----GPVLVHT 479 (540)
Q Consensus 407 ~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~D-----g~v~iw~ 479 (540)
+|+.++.|+. +..+.+||..+.+...+ ..+..... -.+++..+++++++.|+ .+ ..+.+|+
T Consensus 253 --~g~lyv~GG~~~~~v~~yd~~t~~W~~~---------~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 253 --NGQIVVTGGNDAKKTSLYDSSSDSWIPG---------PDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp --TSCEEEECSSSTTCEEEEEGGGTEEEEC---------CCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred --CCCEEEeCCCCCCceEEecCcCCceeEC---------CCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 8999999984 56899999876433211 11111111 12345567899999888 44 3577777
Q ss_pred CC
Q psy1242 480 TF 481 (540)
Q Consensus 480 ~~ 481 (540)
..
T Consensus 321 ~~ 322 (656)
T 1k3i_A 321 PS 322 (656)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=90.92 E-value=4.9 Score=39.90 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=65.4
Q ss_pred CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCC----CCEE
Q psy1242 394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAE----LGLV 466 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spd----g~~l 466 (540)
-.....|+|.| +|++++ +..++.|++++... . +.+..+ .........|+++|+ +.+.
T Consensus 28 l~~P~~ia~~p----dG~l~V-~e~~g~I~~~d~~G-~----------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 28 LEVPWSIAPLG----GGRYLV-TERPGRLVLISPSG-K----------KLVASFDVANVGEAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp CSCEEEEEEEE----TTEEEE-EETTTEEEEECSSC-E----------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CCCCeEEEEcC----CCeEEE-EeCCCEEEEEeCCC-c----------eEeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence 35577899999 897555 56679999886322 1 112211 122356889999997 4444
Q ss_pred EEEeC---C----CcEEEEeCCCc---------EEEEecCCCCCCCceEEEEeeCCCEEEE-ec-------------CCe
Q psy1242 467 VSGSQ---L----GPVLVHTTFGD---------LLRSLDPPSGFASPESVVMSREGVIVVN-YE-------------RGH 516 (540)
Q Consensus 467 asgs~---D----g~v~iw~~~g~---------~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~-------------dg~ 516 (540)
++-+. + ..|..++.++. ++..+.... ......++|.|||.+.++ ++ .|.
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 44442 2 34433433221 122233111 113468999999987776 32 146
Q ss_pred EEEEecCCc
Q psy1242 517 IAAFTMNGN 525 (540)
Q Consensus 517 I~lw~~~g~ 525 (540)
|.-++++|+
T Consensus 171 I~ri~~dG~ 179 (354)
T 3a9g_A 171 ILRVDEEGR 179 (354)
T ss_dssp EEEECTTSC
T ss_pred EEEEcCCCC
Confidence 777777665
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=90.19 E-value=7.2 Score=38.55 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=65.6
Q ss_pred CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCC---CC-EE
Q psy1242 394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAE---LG-LV 466 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spd---g~-~l 466 (540)
-.....++|.| +|+++++ ..++.|.+++ .. .. +.+..+ .........|+++|+ +. +.
T Consensus 30 l~~P~~ia~~p----dG~l~V~-e~~g~I~~i~-~g-~~---------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 30 LEVPWALAFLP----DGGMLIA-ERPGRIRLFR-EG-RL---------STYAELSVYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CSCEEEEEECT----TSCEEEE-ETTTEEEEEE-TT-EE---------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CCCceEEEEcC----CCeEEEE-eCCCeEEEEE-CC-Cc---------cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence 34567899999 8985554 6679999998 32 11 112211 122456889999998 44 44
Q ss_pred EEEeCC-----CcEEEEeCCC-c------EEEEecC-CCCCCCceEEEEeeCCCEEEE-ec-------------CCeEEE
Q psy1242 467 VSGSQL-----GPVLVHTTFG-D------LLRSLDP-PSGFASPESVVMSREGVIVVN-YE-------------RGHIAA 519 (540)
Q Consensus 467 asgs~D-----g~v~iw~~~g-~------~~~~l~~-~~~~~~v~~l~fspdg~~l~s-~~-------------dg~I~l 519 (540)
++-+.. +.|..++.++ . ++..+.. .........++|.|||.+.++ ++ .|.|.-
T Consensus 94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~r 173 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILR 173 (352)
T ss_dssp EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEE
Confidence 444432 3454443322 1 2222431 111113478999999987766 32 156777
Q ss_pred EecCC
Q psy1242 520 FTMNG 524 (540)
Q Consensus 520 w~~~g 524 (540)
++++|
T Consensus 174 i~~dG 178 (352)
T 2ism_A 174 LTPEG 178 (352)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 77766
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.63 E-value=12 Score=37.08 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=78.4
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS- 417 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs- 417 (540)
...+++.|||+ ++++-...|.|++++..+++..... .- .. ......+....|+++|....++...++=+
T Consensus 34 P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~-~~-~~-------v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 34 PWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELG-EV-PG-------VSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE-EC-TT-------CCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred ceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeec-cc-Cc-------eeecCCCCceeeEeccccccCCEEEEEEec
Confidence 35678899998 5666544899999987656542211 00 00 00233567889999981111244434322
Q ss_pred -CCCcEEEEEcCCCcc--cccCCCCCCcc-eEEec-cCCCCEEEEEEcCCCCEEEEEeC-------------CCcE-EEE
Q psy1242 418 -ADCTVLLWHWNARTQ--SIVGETDTPTP-RATLT-GHEQPVTSVAISAELGLVVSGSQ-------------LGPV-LVH 478 (540)
Q Consensus 418 -~DgtV~lWd~~~~~~--~~~~~~~~~~~-~~~l~-~h~~~V~~v~~spdg~~lasgs~-------------Dg~v-~iw 478 (540)
.+..|.-|....... ..+. ..+. +..+. +....-..|+|.|||.+.++.+. -|.| ++
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~---~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi- 179 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLG---APDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM- 179 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBC---CCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE-
T ss_pred CCCCEEEEEEeCCCCcccccCC---CcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE-
Confidence 344454455433110 0000 0111 11221 11112356899999987777542 2333 33
Q ss_pred eCCCc----------EEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 479 TTFGD----------LLRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 479 ~~~g~----------~~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
+.+|+ .+.. .++. .+..++|.|+|.+.++
T Consensus 180 ~~dG~ip~~nPf~~~~i~a-~G~R---Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYS-YGHR---NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEE-BCCS---BCCEEEECTTCCEEEE
T ss_pred eCCCCccCCCCCCCCeEEe-eCCC---CcceEEECCCCCEEEE
Confidence 22332 1111 1222 3578999999887665
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.02 E-value=19 Score=35.53 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=96.5
Q ss_pred EEEEEEEecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 338 RHNCFVTTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
.+.....+++.++++++|- -.|.+.+|+.+ .+..+.++||.+ .-..+.+.-. .....
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa---------------~F~~~~~~g~-~~~~~ 215 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAA---------------SFAQFKMEGN-AEEST 215 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEE---------------EEEEECCTTC-SSCEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccceeeeeee---------------eeEEEecCCC-CCCce
Confidence 3666777899998877764 23667888887 445566644443 2222221100 00111
Q ss_pred EEEEEeC---CCcEEEEEcCCC-cccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242 412 FIASGSA---DCTVLLWHWNAR-TQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD 483 (540)
Q Consensus 412 ~l~sgs~---DgtV~lWd~~~~-~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~ 483 (540)
.++.+.. .+.+.|-++... .+. .+...+.+..+.. -.+--.++.+|+....+..-++-|.+.+++. +|.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 2222222 257888887543 111 0111122222222 2344567888998889999999999999876 999
Q ss_pred EEEEecCCCCCCCceEEEEe-eCCCEEEEecCCeEEEEecCCc
Q psy1242 484 LLRSLDPPSGFASPESVVMS-REGVIVVNYERGHIAAFTMNGN 525 (540)
Q Consensus 484 ~~~~l~~~~~~~~v~~l~fs-pdg~~l~s~~dg~I~lw~~~g~ 525 (540)
++..-+-..+ +|-..+-. ..+.+++...+|+|..-+++..
T Consensus 293 ~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 293 CIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 9877766655 44444443 3466666677788877777743
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=86.77 E-value=25 Score=34.48 Aligned_cols=166 Identities=10% Similarity=0.017 Sum_probs=91.0
Q ss_pred EEEEEE---ecCCCEEEEEEe-------------cCCcEEEEEcc---CCeEEEEEecccceeeeeeEEEeec-cCcceE
Q psy1242 339 HNCFVT---TVDSRFLLACGF-------------WDNSFRVFSTD---NARIVQIIFGHYGVVTSRIVQIIFG-HYGVVT 398 (540)
Q Consensus 339 ~~~~~~---spdg~~llasgs-------------~Dgsv~iwd~~---~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt 398 (540)
...+.+ .|+++ |+++.. .++.|..+|+. +++.+....-.. +... .+.+.+ -.....
T Consensus 65 ~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~--~~~~-~~~~~g~~~~~~n 140 (334)
T 2p9w_A 65 MSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK--VQDE-FEKKAGKRPFGVV 140 (334)
T ss_dssp EEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH--HHHH-HHHHHSSCCEEEE
T ss_pred eeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc--cccc-ccccccccccCCc
Confidence 356666 46765 455432 26779999998 787765541000 0000 000000 112478
Q ss_pred EEEeccCccCCCcEEEEEeCC-CcEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 399 CLSRSECNITADCFIASGSAD-CTVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 399 ~l~~sp~~~~dg~~l~sgs~D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~ 471 (540)
.++..+ +|+.-++++.- +.|...+.+.. .+..+. ......+.|+++|+|..|+....
T Consensus 141 DvavD~----~GnaYVt~s~~~~~I~rV~pdG~------------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 141 QSAQDR----DGNSYVAFALGMPAIARVSADGK------------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp EEEECT----TSCEEEEEEESSCEEEEECTTSC------------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred eeEECC----CCCEEEeCCCCCCeEEEEeCCCC------------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 899999 89999988877 77665554331 112111 11223678999999998888766
Q ss_pred CCcEEEEeCCCcEE--EEec--CCCC-CCCceEE-EEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242 472 LGPVLVHTTFGDLL--RSLD--PPSG-FASPESV-VMSREGVIVVNY--ERGHIAAFTMNG 524 (540)
Q Consensus 472 Dg~v~iw~~~g~~~--~~l~--~~~~-~~~v~~l-~fspdg~~l~s~--~dg~I~lw~~~g 524 (540)
+|.+.-++...... ..+. +... ......| ..-.+|+.|+.+ ..+.+.+.+.+|
T Consensus 205 ~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 205 PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 88886655431111 1111 2111 0123443 444678875543 356677777766
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.03 E-value=6.3 Score=39.04 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=31.9
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp 404 (540)
...+++.|+|++|+++ ...|.|++++.. ++....+..-. . ......+....|+++|
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~-~-------v~~~g~~g~~gia~~p 75 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVP-D-------VWAHGQGGLLDVVLAP 75 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCC-C-------CCCSTTCSEEEEEECT
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCc-c-------cccCCCCCceeEEECC
Confidence 4677889999843444 457899998853 44221110000 0 0012244678999998
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.66 E-value=4.1 Score=37.82 Aligned_cols=147 Identities=8% Similarity=-0.027 Sum_probs=76.9
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEE------EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV------QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~------~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l 413 (540)
.+++++|+|. |.+. .+|.+.-.+..+.+.. ..+ +. .+..+ -.++.|.| +|.+.
T Consensus 44 ~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I-G~------------~Gw~~-F~a~~fD~----~G~LY 102 (236)
T 1tl2_A 44 KFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKI-GN------------GGWNQ-FQFLFFDP----NGYLY 102 (236)
T ss_dssp SEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEE-EC------------SCGGG-CSEEEECT----TSCEE
T ss_pred eeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEe-cc------------ccccc-ceEEEECC----CCCEE
Confidence 4789999998 5566 5777666555432111 111 00 02222 46889999 88777
Q ss_pred EEEeCCCcEEEEEcCCCc-ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE-----EE
Q psy1242 414 ASGSADCTVLLWHWNART-QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL-----LR 486 (540)
Q Consensus 414 ~sgs~DgtV~lWd~~~~~-~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~-----~~ 486 (540)
++ .||.|.-++--+.. ...+. .....-.+-=..+.+|.+.|+|.+.+.. |+.+.-+.. ++.. ..
T Consensus 103 av--~dG~iyr~~pP~~~~~~Wl~-----~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~ 173 (236)
T 1tl2_A 103 AV--SKDKLYKASPPQSDTDNWIA-----RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARA 173 (236)
T ss_dssp EE--ETTEEEEESCCCSTTCCHHH-----HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHC
T ss_pred Ee--CCCEEEEeCCCcCCCCceec-----cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccccc
Confidence 76 56888766632111 00000 0001111122467999999999877666 777543422 1110 01
Q ss_pred EecCCCCCCCceEEEEeeCCCEEEEecCCeE
Q psy1242 487 SLDPPSGFASPESVVMSREGVIVVNYERGHI 517 (540)
Q Consensus 487 ~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I 517 (540)
+.-++.++..-..+.|.++|.+.+.. ++.+
T Consensus 174 ~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 174 TKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKF 203 (236)
T ss_dssp EEEESSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred ceeccCCcceEEEEEECCCCcEEEEe-CCeE
Confidence 11122222223456688888777666 5644
No 316
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.65 E-value=26 Score=33.68 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=66.5
Q ss_pred EEEecCCCEEEEEEecC-------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242 342 FVTTVDSRFLLACGFWD-------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT 408 (540)
Q Consensus 342 ~~~spdg~~llasgs~D-------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~ 408 (540)
--++++|.+|..+...+ ..|+..+++.++.. .+ .. .. +..+++
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l---------------~~--~~--~~~~s~---- 113 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VL---------------DP--DP--CIYASL---- 113 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EE---------------EC--SC--EEEEEE----
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Ee---------------ec--CC--ccEEEE----
Confidence 34588999887776544 35677777655432 22 11 11 235677
Q ss_pred CCcEEEEEe--CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcEE
Q psy1242 409 ADCFIASGS--ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTTFGDLL 485 (540)
Q Consensus 409 dg~~l~sgs--~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~~g~~~ 485 (540)
++++|+-.. .++.-.|+.+... +.....+..+.. .+++++++.|.-.+. ...|.+-..+|...
T Consensus 114 ~g~~Iy~~~~~~~~~~~Iy~~~~d----------Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 114 IGNYIYYLHYDTQTATSLYRIRID----------GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp ETTEEEEEEESSSSCEEEEEEETT----------SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred eCCEEEEEeecCCCCceEEEEECC----------CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 777887665 4555556555432 112334444432 345667777665554 34454444455444
Q ss_pred EEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 486 RSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 486 ~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
+.+.. + . ....+.|+|.+|+-
T Consensus 180 ~~l~~--~--~-~~~~~~P~g~~iy~ 200 (302)
T 3s25_A 180 ALFYD--C--N-CYKPVVLDDTNVYY 200 (302)
T ss_dssp EEEEC--S--C-EEEEEEEETTEEEE
T ss_pred EEEeC--C--C-ccceeeecCCEEEE
Confidence 44421 1 1 12345577776654
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=85.12 E-value=62 Score=37.50 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=46.4
Q ss_pred EEEEEEecC------CCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 339 HNCFVTTVD------SRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 339 ~~~~~~spd------g~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
+.|+++.+. +. ++|.|.| |++++|+++.+.+.+.... +.+ .....++.+... +...
T Consensus 556 vscl~i~~~~~~~~~s~-~~aVg~~~d~tv~I~sL~~l~~~~~~~-------------L~~-~~~p~si~l~~~--~~~~ 618 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSP-LCAIGLWTDISARILKLPSFELLHKEM-------------LGG-EIIPRSILMTTF--ESSH 618 (1158)
T ss_dssp EEEEECCCCSSSTTCCS-EEEEEETTTTEEEEEETTTCCEEEEEE-------------CCS-SCCEEEEEEEEE--TTEE
T ss_pred eEEEEeecCCCCccccc-EEEEEECCCCEEEEEECCCCCeEEEEE-------------CCC-CCCCcEEEEEEe--CCCc
Confidence 678877754 34 5788998 9999999998766553321 111 123334443321 0345
Q ss_pred EEEEEeCCCcEEEEEcCC
Q psy1242 412 FIASGSADCTVLLWHWNA 429 (540)
Q Consensus 412 ~l~sgs~DgtV~lWd~~~ 429 (540)
+|..|-.||.+.-+.++.
T Consensus 619 ~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp EEEEEETTSEEEEEEECT
T ss_pred EEEEEeCCCeEEEEEEcC
Confidence 788888999887666654
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=84.97 E-value=10 Score=37.51 Aligned_cols=122 Identities=14% Similarity=0.158 Sum_probs=63.7
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC----CCEEEEEe
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE----LGLVVSGS 470 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd----g~~lasgs 470 (540)
.....|+|.| +|+.|+.+...|.|++++........+. ..+ ............++++|+ +.+.++-+
T Consensus 18 ~~P~~i~~~p----dG~~l~V~e~~G~i~~~~~~g~~~~~~~----~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 18 DHPWALAFLP----DNHGMLITLRGGELRHWQAGKGLSAPLS----GVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SSEEEEEECS----TTCCEEEEETTTEEEEEETTTEECCCCB----SCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCcEEEEEcC----CCCEEEEEeCCceEEEEeCCCceeeEec----CCc-ccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4567999999 9983444567899999874321100000 000 111223456789999995 44444433
Q ss_pred C---CC----cEEEEeCC---CcE--EEE-ecC-C---CCCCCceEEEEeeCCCEEEE-ec-------------CCeEEE
Q psy1242 471 Q---LG----PVLVHTTF---GDL--LRS-LDP-P---SGFASPESVVMSREGVIVVN-YE-------------RGHIAA 519 (540)
Q Consensus 471 ~---Dg----~v~iw~~~---g~~--~~~-l~~-~---~~~~~v~~l~fspdg~~l~s-~~-------------dg~I~l 519 (540)
. ++ .|..+..+ +.+ ... +.. + ........|+|.|||.+.++ |+ .|.|.-
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r 168 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR 168 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence 2 12 33223221 111 111 111 1 11112468999999976666 33 146777
Q ss_pred EecCCc
Q psy1242 520 FTMNGN 525 (540)
Q Consensus 520 w~~~g~ 525 (540)
++++|+
T Consensus 169 i~~dG~ 174 (353)
T 2g8s_A 169 LTDQGE 174 (353)
T ss_dssp EETTSC
T ss_pred ECCCCC
Confidence 777765
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.87 E-value=30 Score=34.14 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=60.3
Q ss_pred ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe----ccCCCCEEEEEEcCC----C
Q psy1242 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL----TGHEQPVTSVAISAE----L 463 (540)
Q Consensus 392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~v~~spd----g 463 (540)
..-.....|+|.| +|..+++--..|.|++++...... ..+..+ .........|+++|+ +
T Consensus 29 ~gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~---------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 29 TGLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRK---------TELGEVPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred cCCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcE---------eeecccCceeecCCCCceeeEeccccccCC
Confidence 3455678999999 998777665589999887543211 112212 233567899999996 4
Q ss_pred CEEEEEe--CCCcEEEEeCCC-----------cE-EEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 464 GLVVSGS--QLGPVLVHTTFG-----------DL-LRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 464 ~~lasgs--~Dg~v~iw~~~g-----------~~-~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
.+.++-+ .++.|.-+..++ +. +..+... .......|+|.|||.+.++
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEE
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEE
Confidence 4444332 233332232211 11 2233321 1112367999999987776
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=83.74 E-value=33 Score=40.50 Aligned_cols=227 Identities=11% Similarity=0.107 Sum_probs=114.6
Q ss_pred cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCcc---eeeEEEEEE
Q psy1242 273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQK---LRVRHNCFV 343 (540)
Q Consensus 273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~---~~v~~~~~~ 343 (540)
..++++.|..+.....+..+.+.|. ...|-.+.++...+. ..+-.|.+.+ .|+.+ ....+....
T Consensus 85 g~~lQiFnl~~k~klks~~~~e~Vv----fWkWis~~~l~lVT~---~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~ 157 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMTDDVT----FWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR 157 (1630)
T ss_pred CCeEEEeehHHhhhhcccccCCCce----EEEecCCCeeEEEcC---CeEEEeccCCCCccHHHHhcchhcccCeeEEee
Confidence 5678888887765555555543331 233434444333321 0111111111 01111 123356667
Q ss_pred EecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec--cCcceEEEEeccCccCCCcEEEE
Q psy1242 344 TTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG--HYGVVTCLSRSECNITADCFIAS 415 (540)
Q Consensus 344 ~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~--h~~~Vt~l~~sp~~~~dg~~l~s 415 (540)
.+++.++++++|- -.|.+.+|+++ .+..+.++||.+.... ..+.| +...+.|.+.-.
T Consensus 158 ~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~sQ~iegha~~F~~---~~~~~~~~~~~l~~f~~~~----------- 222 (1630)
T 1xi4_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQ---FKMEGNAEESTLFCFAVRG----------- 222 (1630)
T ss_pred eCCCCCeEEEEeeccCCCcccceeeeeecc-cccchhhhHhHhhhhe---eccCCCCCCceEEEEEEec-----------
Confidence 7899999877764 34778888887 3444556444432210 00011 112233332221
Q ss_pred EeCCCcEEEEEcCCC-cccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC
Q psy1242 416 GSADCTVLLWHWNAR-TQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP 490 (540)
Q Consensus 416 gs~DgtV~lWd~~~~-~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~ 490 (540)
...+.+.|-++... .+.. +...+.+..+.. -.+--.++.+|+....+..-+.-|.+.+++. +|.++..-+.
T Consensus 223 -~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 223 -QAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred -CCCceEEEEecCCCccCCC---CCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 01257888887543 1110 011111111211 1233446788888888888999999999865 8887755544
Q ss_pred CCCCCCceEEEE-eeCCCEEEEecCCeEEEEecCCcEE
Q psy1242 491 PSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRL 527 (540)
Q Consensus 491 ~~~~~~v~~l~f-spdg~~l~s~~dg~I~lw~~~g~~l 527 (540)
... +|-..+- .+.|.+++....|.|.--+++...+
T Consensus 299 s~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 299 SGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred cCC--ceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 443 3333332 2345666666677777777764433
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.18 E-value=22 Score=34.25 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=77.4
Q ss_pred EEecCCCEEEEEE-ecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242 343 VTTVDSRFLLACG-FWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA- 418 (540)
Q Consensus 343 ~~spdg~~llasg-s~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~- 418 (540)
++++++++|..+- +.++ .|...+++ |...+.+ ..+.. .++++ +++.|.-.+.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l---------------t~~~~----~~~~~----~g~~iy~t~~g 165 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI---------------KNHYL----FTCNT----SDRYFYYNNPK 165 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE---------------ESSCC----CCSEE----ETTEEEEECTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE---------------eCCCc----eEeeE----ECCEEEEEeCC
Confidence 5678999865554 1334 45555555 3333444 23322 45677 7777776654
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCcEEEEecCCCCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG--PVLVHTTFGDLLRSLDPPSGFAS 496 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg--~v~iw~~~g~~~~~l~~~~~~~~ 496 (540)
...|.+-++.... ...+.. +... ..++|+++.|+-...++ .|..=..+|.....|.. . .
T Consensus 166 ~~~Iy~~~l~g~~------------~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~--~ 226 (302)
T 3s25_A 166 NGQLYRYDTASQS------------EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--A--N 226 (302)
T ss_dssp TCCEEEEETTTTE------------EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC--S--C
T ss_pred CceEEEEECCCCC------------EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--C--C
Confidence 5666666655422 122222 1222 34568888887666443 33222445555555542 2 2
Q ss_pred ceEEEEeeCCCEEEEec---CCeEEEEecCCcEEEe
Q psy1242 497 PESVVMSREGVIVVNYE---RGHIAAFTMNGNRLRH 529 (540)
Q Consensus 497 v~~l~fspdg~~l~s~~---dg~I~lw~~~g~~l~~ 529 (540)
+ ..|+|+|..|..+. .+.|..-+++|.....
T Consensus 227 ~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~ 260 (302)
T 3s25_A 227 I--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKE 260 (302)
T ss_dssp E--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEE
T ss_pred c--ceEEECCCEEEEEECCCCcEEEEEECCCCccEE
Confidence 2 45888999887542 3567777888754333
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.03 E-value=22 Score=36.52 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=56.4
Q ss_pred CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCC----C
Q psy1242 394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAE----L 463 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spd----g 463 (540)
......|+|.| +|+++++-...+.|++++...... ..+..+. .....+..|+|+|+ +
T Consensus 26 l~~P~~~a~~p----dG~l~V~e~~gg~I~~~~~~~g~~---------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 26 LNKPHALLWGP----DNQIWLTERATGKILRVNPESGSV---------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp CSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCCceEEEEcC----CCcEEEEEcCCCEEEEEECCCCcE---------eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 44567999999 998777654445788876432211 1122221 12456789999995 4
Q ss_pred CEEEEEeC------C------CcE-EEE-eC-CCc-----E-EEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 464 GLVVSGSQ------L------GPV-LVH-TT-FGD-----L-LRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 464 ~~lasgs~------D------g~v-~iw-~~-~g~-----~-~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
.+.++-+. + ..| ++- +. .+. . +..+... .......|+|.|||.+.++
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEE
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEE
Confidence 44444432 1 123 221 21 111 1 1223321 1124589999999997776
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=81.92 E-value=49 Score=33.91 Aligned_cols=166 Identities=11% Similarity=0.094 Sum_probs=96.1
Q ss_pred EEEEEEEecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242 338 RHNCFVTTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC 411 (540)
Q Consensus 338 ~~~~~~~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~ 411 (540)
.+.....+++.++++.+|- -.|.+.+|+.+ .+..+.++||. ..-..+...-. .....
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGha---------------a~F~~~~~~g~-~~~~~ 214 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHA---------------ASFAQFKMEGN-AEEST 214 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSE---------------EEEEEEECTTC-SSEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeee---------------eeeEEEecCCC-CCCce
Confidence 4667777899999877764 34677888887 44556664444 33322222110 00012
Q ss_pred EEEEEeC---CCcEEEEEcCCC-cccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242 412 FIASGSA---DCTVLLWHWNAR-TQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD 483 (540)
Q Consensus 412 ~l~sgs~---DgtV~lWd~~~~-~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~ 483 (540)
.++.+.. .+.+.|-++... .+.. +...+.+..+. .-.+--.++.+|+....+..-++-|.+.+++. +|.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~---~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCC---CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCC---CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 2333333 268888887543 1110 01111111121 12344567889999999999999999999876 899
Q ss_pred EEEEecCCCCCCCceEEEEe-eCCCEEEEecCCeEEEEecCCc
Q psy1242 484 LLRSLDPPSGFASPESVVMS-REGVIVVNYERGHIAAFTMNGN 525 (540)
Q Consensus 484 ~~~~l~~~~~~~~v~~l~fs-pdg~~l~s~~dg~I~lw~~~g~ 525 (540)
++..-+-..+ +|-..+-. ..|.+++...+|.|..-+++..
T Consensus 292 ~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 292 CIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 8877665555 44443333 3455666667777777776643
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=79.16 E-value=6.3 Score=36.52 Aligned_cols=108 Identities=8% Similarity=0.009 Sum_probs=59.9
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCC-cceEEe-c-cCCCCEEEEEEcCCCCEEEEEeC
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTP-TPRATL-T-GHEQPVTSVAISAELGLVVSGSQ 471 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~-~~~~~l-~-~h~~~V~~v~~spdg~~lasgs~ 471 (540)
..++.++|+| +|.+.+. .+|. ||.....+... ... ..-..+ . +-.. -.++.|.|+|.+.++ .
T Consensus 41 ~~~~~laf~P----~G~LYaV--~~G~--Ly~~~~~t~~~----~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~ 105 (236)
T 1tl2_A 41 SNFKFLFLSP----GGELYGV--LNDK--IYKGTPPTHDN----DNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--S 105 (236)
T ss_dssp TTCSEEEECT----TSCEEEE--ETTE--EEEESCCCSTT----CCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--E
T ss_pred ccceeEEECC----CccEEEE--eCCe--EEEECCCCCCc----ccccccccEeccccccc-ceEEEECCCCCEEEe--C
Confidence 4788999999 8986655 5665 55544322100 000 000111 0 1111 367899999988877 5
Q ss_pred CCcEEEEeC--CCcE--E--EEecCCCCCCCceEEEEeeCCCEEEEecCCeEE
Q psy1242 472 LGPVLVHTT--FGDL--L--RSLDPPSGFASPESVVMSREGVIVVNYERGHIA 518 (540)
Q Consensus 472 Dg~v~iw~~--~g~~--~--~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~ 518 (540)
||.|.-++. ++.- + .+.-+..++..+..|.|.|+|.+-+.. ++.++
T Consensus 106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 688854433 2211 0 111112233357889999999988877 77653
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=73.93 E-value=18 Score=35.71 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=16.7
Q ss_pred CCCEEEEecCCeEEEEecC-CcEEE
Q psy1242 505 EGVIVVNYERGHIAAFTMN-GNRLR 528 (540)
Q Consensus 505 dg~~l~s~~dg~I~lw~~~-g~~l~ 528 (540)
|+.++++..||.|..+|.. |+.+=
T Consensus 212 Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 212 DGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SSCCEEEETTTEEEEECSTTCCEEE
T ss_pred CCcEEEECCCCEEEEEECCCCcEEE
Confidence 4666666777888888875 66554
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=72.49 E-value=1.1e+02 Score=33.07 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA 418 (540)
Q Consensus 339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~ 418 (540)
+.++....+|. |-.|..+ -+..+|..+.+..... ......|.++.. . +|. |..|+.
T Consensus 65 i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~~---------------~~~~~~i~~i~~-~----~g~-lWigt~ 120 (758)
T 3ott_A 65 IYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQPE---------------TDFPTDVRTMAL-Q----GDT-LWLGAL 120 (758)
T ss_dssp EEEEEEETTTE--EEEEETT-EEEEEETTTTEECCCS---------------CCCCSCEEEEEE-E----TTE-EEEEET
T ss_pred EEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECcc---------------cCCCceEEEEEe-c----CCc-EEEEcC
Confidence 45555566665 3455544 4788998765432100 111235777654 3 554 444555
Q ss_pred CCcEEEEEcCCCcccccCCCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC
Q psy1242 419 DCTVLLWHWNARTQSIVGETDTPTPRATLT-----GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG 493 (540)
Q Consensus 419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~ 493 (540)
+ -+..++..+.. +..+. -....|.++....+|.+.+ |+.+|..++...+++. ..+.....
T Consensus 121 ~-Gl~~~~~~~~~------------~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~~~~~-~~~~~~~~ 185 (758)
T 3ott_A 121 N-GLYTYQLQSRK------------LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNGLCRYIPSNGKF-EGIPLPVH 185 (758)
T ss_dssp T-EEEEEETTTCC------------EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTEEEEEETTTTEE-EEECCCCC
T ss_pred C-cceeEeCCCCe------------EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCCHhhCccCCCce-EEecCCCc
Confidence 5 56677754321 12221 1134688888888887665 4555543433334443 33322211
Q ss_pred ----CCCceEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242 494 ----FASPESVVMSREGVIVVNYERGHIAAFTMNGNRL 527 (540)
Q Consensus 494 ----~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l 527 (540)
...|.++...+++..|..|.++-|..+++....+
T Consensus 186 ~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 186 SSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI 223 (758)
T ss_dssp TTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE
T ss_pred cccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE
Confidence 1136777777777654444345678888765433
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=68.91 E-value=23 Score=37.50 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=67.6
Q ss_pred EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE--EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS 417 (540)
Q Consensus 340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs 417 (540)
..+.++|||++++++|-.+.++.|+|+++-...- .+..-.+.+.+ ... -.-.....+|.+ +|.-..|--
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a----e~e-~GlGPlHt~Fd~----~G~aYTtlf 396 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG----EPE-LGLGPLHTTFDG----RGNAYTTLF 396 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE----CCB-CCSCEEEEEECS----SSEEEEEET
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe----ecc-CCCcccEEEECC----CCceEeeee
Confidence 3456799999999999999999999987421100 00000000000 001 123355678998 886556666
Q ss_pred CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE------EcCCCCEEEEEe
Q psy1242 418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA------ISAELGLVVSGS 470 (540)
Q Consensus 418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~------~spdg~~lasgs 470 (540)
.|..|.-|++........++. ....+..+.-|-.+- .+. -.|+|++|++..
T Consensus 397 idSqvvkWni~~a~~~~~g~~-~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 397 IDSQVVKWNMEEAVRAYKGEK-VNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp TTTEEEEEEHHHHHHHHTTCC-CCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred ecceEEEEeccHHHHHhcCcc-CCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 899999999875322221221 123344454443321 222 256888888875
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=68.82 E-value=76 Score=29.63 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCcEEEEEeCC-------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEE
Q psy1242 409 ADCFIASGSAD-------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----PVL 476 (540)
Q Consensus 409 dg~~l~sgs~D-------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~v~ 476 (540)
+++.++.|+.+ ..+.++|..+.....+. .+........++.+ ++.+++.|+.++ .+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---------~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---------EMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---------CCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---------CCccccccccEEEE--CCEEEEECCCCCCcccceEE
Confidence 56777777643 34778887654432211 11111111122222 567777776543 455
Q ss_pred EEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-C-----CeEEEEecCCcE
Q psy1242 477 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R-----GHIAAFTMNGNR 526 (540)
Q Consensus 477 iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-d-----g~I~lw~~~g~~ 526 (540)
+++.....-..+...... .....+..-++++++.|. + ..+.+||+..+.
T Consensus 224 ~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 224 VYDPTTNAWRQVADMNMC-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCCEeeCCCCCCc-cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 666533333333221110 112222334677766643 2 358999987543
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.33 E-value=81 Score=29.74 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=15.6
Q ss_pred CCcEEEEEeC-C-----CcEEEEEcCCCc
Q psy1242 409 ADCFIASGSA-D-----CTVLLWHWNART 431 (540)
Q Consensus 409 dg~~l~sgs~-D-----gtV~lWd~~~~~ 431 (540)
+++.++.|+. + ..+.++|..+.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 5677777776 2 367888876644
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=68.01 E-value=79 Score=29.48 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=70.5
Q ss_pred CCCEEEEEEecC-----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC--
Q psy1242 347 DSRFLLACGFWD-----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-- 419 (540)
Q Consensus 347 dg~~llasgs~D-----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-- 419 (540)
+++ +++.|+.+ +.+.++|..+.+-...-. +......-.++.. +++.++.|+.+
T Consensus 112 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-------------~p~~r~~~~~~~~------~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 112 GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGD-------------MQTAREGAGLVVA------SGVIYCLGGYDGL 171 (301)
T ss_dssp TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEE-------------CSSCCBSCEEEEE------TTEEEEECCBCSS
T ss_pred CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCC-------------CCCCcccceEEEE------CCEEEEECCCCCC
Confidence 555 67777654 357888887665332210 0111111122222 56777777754
Q ss_pred ---CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCcEEEEecC-
Q psy1242 420 ---CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----PVLVHTTFGDLLRSLDP- 490 (540)
Q Consensus 420 ---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~v~iw~~~g~~~~~l~~- 490 (540)
..+.++|..+.....+. .+........++.+ ++.+++.|+.++ .+.+++.....-..+..
T Consensus 172 ~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNVT---------PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp CBCCCEEEEETTTTEEEEEC---------CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred cccceEEEEeCCCCcEEeCC---------CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 45778887664432211 11111111122222 566777776543 46666653333233322
Q ss_pred CCCCCCceEEEEeeCCCEEEEec-C-----CeEEEEecCCc
Q psy1242 491 PSGFASPESVVMSREGVIVVNYE-R-----GHIAAFTMNGN 525 (540)
Q Consensus 491 ~~~~~~v~~l~fspdg~~l~s~~-d-----g~I~lw~~~g~ 525 (540)
+.. .....+..-++++++.|. + ..+.+||++.+
T Consensus 241 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 221 112223334677666643 2 45788998744
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=67.27 E-value=82 Score=29.45 Aligned_cols=65 Identities=6% Similarity=0.001 Sum_probs=36.2
Q ss_pred CCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC---
Q psy1242 347 DSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD--- 419 (540)
Q Consensus 347 dg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D--- 419 (540)
+++ |++.|+.+ +.+.++|..+++-...-. +......-.++.+ +++.++.|+.+
T Consensus 55 ~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-------------~p~~r~~~~~~~~------~~~iyv~GG~~~~~ 114 (306)
T 3ii7_A 55 DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLG-------------PPTPRDSLAACAA------EGKIYTSGGSEVGN 114 (306)
T ss_dssp TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEEC-------------CSSCCBSCEEEEE------TTEEEEECCBBTTB
T ss_pred CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCC-------------CCccccceeEEEE------CCEEEEECCCCCCC
Confidence 555 67777755 668888988765432210 0111111122222 56777778765
Q ss_pred ---CcEEEEEcCCCc
Q psy1242 420 ---CTVLLWHWNART 431 (540)
Q Consensus 420 ---gtV~lWd~~~~~ 431 (540)
..+.++|..+.+
T Consensus 115 ~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 115 SALYLFECYDTRTES 129 (306)
T ss_dssp SCCCCEEEEETTTTE
T ss_pred cEeeeEEEEeCCCCc
Confidence 457788876644
No 332
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.17 E-value=1e+02 Score=31.49 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=57.8
Q ss_pred CcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec---------cCCCCEEEEEEcCC-
Q psy1242 394 YGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT---------GHEQPVTSVAISAE- 462 (540)
Q Consensus 394 ~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---------~h~~~V~~v~~spd- 462 (540)
-..-..|+|.| +|. .|+.+...|.|++++.+.... ..++..+. +.......|+++|+
T Consensus 13 L~~P~~~a~~p----dG~~rl~V~er~G~i~~~~~~g~~~--------~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f 80 (463)
T 2wg3_C 13 LRQPVGALHSG----DGSQRLFILEKEGYVKILTPEGEIF--------KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY 80 (463)
T ss_dssp ESSEEEEECCS----SSSCCEEEEETTTEEEEECTTSCBC--------SSCSEECTTTBCCCCSSSCCCSEEEEEECTTH
T ss_pred CCCceEEEECC----CCCeEEEEEeCCceEEEEeCCCCee--------eeeecCCcceeccCccccCCCcceeeEeCCCC
Confidence 34567899999 885 455567889999997432110 01111111 12457889999996
Q ss_pred ---CCEEEEEeC--CC--------cEEE--EeCC-----------CcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242 463 ---LGLVVSGSQ--LG--------PVLV--HTTF-----------GDLLRSLDPPSGFASPESVVMSREGVIVVN 511 (540)
Q Consensus 463 ---g~~lasgs~--Dg--------~v~i--w~~~-----------g~~~~~l~~~~~~~~v~~l~fspdg~~l~s 511 (540)
+.+.++-+. ++ ..+| +..+ .+.+..+...........|+|.|||.+.++
T Consensus 81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~ 155 (463)
T 2wg3_C 81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYII 155 (463)
T ss_dssp HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEE
T ss_pred cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEE
Confidence 444444332 11 1222 3211 123333331111123478999999987666
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=63.68 E-value=95 Score=28.88 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=50.3
Q ss_pred CCcEEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEE
Q psy1242 409 ADCFIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----PVLVH 478 (540)
Q Consensus 409 dg~~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~v~iw 478 (540)
+++.++.|+.++ .+.++|..+.+.. .+..+........++.+ ++++++.|+.++ .+.++
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~---------~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWS---------MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEE---------EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEE---------ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEE
Confidence 567777777543 5777776654322 11222111111122222 667777776553 35555
Q ss_pred eCCCcEEEEecC-CCCCCCceEEEEeeCCCEEEEec------CCeEEEEecCCcE
Q psy1242 479 TTFGDLLRSLDP-PSGFASPESVVMSREGVIVVNYE------RGHIAAFTMNGNR 526 (540)
Q Consensus 479 ~~~g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~------dg~I~lw~~~g~~ 526 (540)
+.....-..+.. +.. .....+..-++++++.|. ...+.+||+....
T Consensus 181 d~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 181 DPHTGHWTNVTPMATK--RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eCCCCcEEeCCCCCcc--cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 553332222321 111 111222334666666643 2468899987443
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=62.64 E-value=1.2e+02 Score=29.78 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=78.0
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV 422 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV 422 (540)
..+|..+ +||.-. ..++.|+|+++...++.. .- ...|.-=.|-. .+.|+-.. +..|
T Consensus 73 IMnP~~~-ViALra-g~~LQiFnletK~klks~---------------~~-~e~VvfWkWis-----~~~L~lVT-~taV 128 (365)
T 2xzh_A 73 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH---------------TM-TDDVTFWKWIS-----LNTVALVT-DNAV 128 (365)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEE---------------EC-SSCEEEEEECS-----SSEEEEEE-SSEE
T ss_pred eeCCCcc-EEEEec-CCeEEEechHHhhhhcce---------------ec-CCccEEEEecC-----CCeEEEEc-CCcE
Confidence 3578777 566654 688999999999888776 32 34555556653 34444443 5689
Q ss_pred EEEEcCCCcccccCCCCCCcceEEeccCC----CCEEEEEEcCCCCEEEEEe---CC----CcEEEEeCCCcEEEEecCC
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLTGHE----QPVTSVAISAELGLVVSGS---QL----GPVLVHTTFGDLLRSLDPP 491 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~v~~spdg~~lasgs---~D----g~v~iw~~~g~~~~~l~~~ 491 (540)
.-|++... ..|.+.+..|. ..|..-..+++.++++..+ .+ |.+.++....+.-+.+.+|
T Consensus 129 yHWs~~~~----------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 198 (365)
T 2xzh_A 129 YHWSMEGE----------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 198 (365)
T ss_dssp EEEESSTT----------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS
T ss_pred EEEcccCC----------CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeee
Confidence 99998652 25677776664 3566777788888765432 23 4456787777777888777
Q ss_pred CC
Q psy1242 492 SG 493 (540)
Q Consensus 492 ~~ 493 (540)
..
T Consensus 199 aa 200 (365)
T 2xzh_A 199 AA 200 (365)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=61.04 E-value=66 Score=34.04 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=73.9
Q ss_pred ceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCC-CCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy1242 396 VVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGET-DTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG 473 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg 473 (540)
....+.++| ||++++.++ .+.+|.+.|++........+. .....+..-..-.......+|.++|....|.--|.
T Consensus 324 sPHGv~vsP----DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 324 NPHGCNTSS----DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SCCCEEECT----TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCcceeeCC----CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 344678899 999987765 588999999874221100000 00011111111233456788999995555666788
Q ss_pred cEEEEeCC-------C----cEEEEecCCCCCCCceEEEE------eeCCCEEEEec----CCe----------EEEEec
Q psy1242 474 PVLVHTTF-------G----DLLRSLDPPSGFASPESVVM------SREGVIVVNYE----RGH----------IAAFTM 522 (540)
Q Consensus 474 ~v~iw~~~-------g----~~~~~l~~~~~~~~v~~l~f------spdg~~l~s~~----dg~----------I~lw~~ 522 (540)
.|.-|+.. | ..+..+..|=. +-.+.- .++|++|++.. |+. -.|.|+
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidI 476 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDI 476 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEEC
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEec
Confidence 88778541 2 34555655432 333433 57999999842 433 378999
Q ss_pred CCcEEE
Q psy1242 523 NGNRLR 528 (540)
Q Consensus 523 ~g~~l~ 528 (540)
.|..+.
T Consensus 477 sGdkM~ 482 (638)
T 3sbq_A 477 SGDEMK 482 (638)
T ss_dssp SSSSCE
T ss_pred CCCceE
Confidence 876443
No 336
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=60.50 E-value=1.1e+02 Score=28.55 Aligned_cols=145 Identities=11% Similarity=0.014 Sum_probs=69.3
Q ss_pred CEEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcE
Q psy1242 349 RFLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTV 422 (540)
Q Consensus 349 ~~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV 422 (540)
..|++.|+. .+.+.+||..+++-.. +.. +......-.++.+ ++..++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~------------~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTD-IRC------------PFEKRRDAACVFW------DNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEE-CCC------------CSCCCBSCEEEEE------TTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEec-CCC------------CCcccceeEEEEE------CCEEEEEeCCCCCCcceE
Confidence 446677765 3578899988766432 200 0111111222222 56777788755 567
Q ss_pred EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCcEEEEecC-CCCCC
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL------GPVLVHTTFGDLLRSLDP-PSGFA 495 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D------g~v~iw~~~g~~~~~l~~-~~~~~ 495 (540)
.++|..+.+... +..+........++.+ ++++++.|+.+ ..+.+++.....-..+.. +..
T Consensus 73 ~~~d~~~~~W~~---------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-- 139 (306)
T 3ii7_A 73 DCYNVVKDSWYS---------KLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-- 139 (306)
T ss_dssp EEEETTTTEEEE---------EECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--
T ss_pred EEEeCCCCeEEE---------CCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--
Confidence 777776543221 1111111111122222 56777777755 235556553322222221 211
Q ss_pred CceEEEEeeCCCEEEEec----------CCeEEEEecCCc
Q psy1242 496 SPESVVMSREGVIVVNYE----------RGHIAAFTMNGN 525 (540)
Q Consensus 496 ~v~~l~fspdg~~l~s~~----------dg~I~lw~~~g~ 525 (540)
.....+..-++++.+.|. -..+.+||+...
T Consensus 140 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 140 RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 112222234677666643 245788888754
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=60.30 E-value=1.6e+02 Score=30.26 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=77.1
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV 422 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV 422 (540)
..+|..+ +||--. ..++.|+|+++...++.. .-.+ .|.-=.|-. .+.|+-.+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnle~K~klks~---------------~~~e-~VvfWkWis-----~~~l~lVT-~taV 127 (494)
T 1bpo_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH---------------TMTD-DVTFWKWIS-----LNTVALVT-DNAV 127 (494)
T ss_dssp EECSSSS-CEEEEE-TTEEEEEETTTTEEEEEE---------------ECSS-CCCEEEEEE-----TTEEEEEC-SSEE
T ss_pred eeCCCCc-EEEEec-CCeEEEEchHHhhhhcce---------------ecCC-CceEEEecC-----CCeEEEEc-CCee
Confidence 4578777 456654 789999999998888776 3333 444445543 23444333 6789
Q ss_pred EEEEcCCCcccccCCCCCCcceEEeccCC----CCEEEEEEcCCCCEEEEEe---CC----CcEEEEeCCCcEEEEecCC
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLTGHE----QPVTSVAISAELGLVVSGS---QL----GPVLVHTTFGDLLRSLDPP 491 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~v~~spdg~~lasgs---~D----g~v~iw~~~g~~~~~l~~~ 491 (540)
.-|++... ..|...+..|. ..|..-..+++.++++..+ .+ |.+.++....+.-+.+.+|
T Consensus 128 yHWsi~~~----------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 197 (494)
T 1bpo_A 128 YHWSMEGE----------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 197 (494)
T ss_dssp EEEESSSS----------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS
T ss_pred EEecccCC----------CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee
Confidence 99998652 25677776664 3566777788888765432 23 4456787777777778777
Q ss_pred CC
Q psy1242 492 SG 493 (540)
Q Consensus 492 ~~ 493 (540)
..
T Consensus 198 aa 199 (494)
T 1bpo_A 198 AA 199 (494)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=53.17 E-value=1.5e+02 Score=27.76 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=51.5
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy1242 409 ADCFIASGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-----GPVLVH 478 (540)
Q Consensus 409 dg~~l~sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-----g~v~iw 478 (540)
++..++.|+.+ ..+.++|..+.+...+. .+........++.+ ++.+++.|+.+ ..+.++
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---------~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---------AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC---------CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC---------CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 56777777754 45778887654432211 11111111122233 56777777654 345666
Q ss_pred eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec------CCeEEEEecCCcEE
Q psy1242 479 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE------RGHIAAFTMNGNRL 527 (540)
Q Consensus 479 ~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~------dg~I~lw~~~g~~l 527 (540)
+.....-..+...... .....+..-++++++.|. -..+.+||+..+.-
T Consensus 237 d~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 237 DVETETWTFVAPMKHR-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCC-ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 6533333333221110 111122223677766653 24588999885433
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=52.47 E-value=64 Score=38.20 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=72.3
Q ss_pred EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV 422 (540)
Q Consensus 343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV 422 (540)
..+|..+ +||.-. ..++.|+|+++...++.. .- ...|.-=.|-. .+.|+-.+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~---------------~~-~e~VvfWkWis-----~~~l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH---------------TM-TDDVTFWKWIS-----LNTVALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhccc---------------cc-CCCceEEEecC-----CCeeEEEc-CCeE
Confidence 4577777 556654 688999999987777655 22 23455556643 23443333 5689
Q ss_pred EEEEcCCCcccccCCCCCCcceEEeccC----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCcEEEEecCC
Q psy1242 423 LLWHWNARTQSIVGETDTPTPRATLTGH----EQPVTSVAISAELGLVVSGS-------QLGPVLVHTTFGDLLRSLDPP 491 (540)
Q Consensus 423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h----~~~V~~v~~spdg~~lasgs-------~Dg~v~iw~~~g~~~~~l~~~ 491 (540)
.-|++... ..|+..+..| ...|..-..+++.++++..+ -.|.+.++....+..+.+.+|
T Consensus 128 yHW~~~~~----------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegh 197 (1630)
T 1xi4_A 128 YHWSMEGE----------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 197 (1630)
T ss_pred EEeccCCC----------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHh
Confidence 99998642 2455555555 34566667788888765332 235667776666666666666
Q ss_pred CC
Q psy1242 492 SG 493 (540)
Q Consensus 492 ~~ 493 (540)
.+
T Consensus 198 a~ 199 (1630)
T 1xi4_A 198 AA 199 (1630)
T ss_pred Hh
Confidence 54
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.46 E-value=79 Score=35.76 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=26.5
Q ss_pred ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNART 431 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~ 431 (540)
.+.+++..+ +..+++|-+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~----~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLS----TYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEET----TTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecC----CCcEEEEEECCCEEEEEECCCCC
Confidence 466777776 78899999999999999987743
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.71 E-value=1.5e+02 Score=28.30 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=9.7
Q ss_pred CcEEEEEccCCeE
Q psy1242 359 NSFRVFSTDNARI 371 (540)
Q Consensus 359 gsv~iwd~~~g~~ 371 (540)
+.+.+||..+.+-
T Consensus 168 ~~v~~yd~~~~~W 180 (357)
T 2uvk_A 168 KFLLSFDPSTQQW 180 (357)
T ss_dssp CEEEEEETTTTEE
T ss_pred ccEEEEeCCCCcE
Confidence 5788899887653
No 342
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=46.35 E-value=1.8e+02 Score=26.87 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCEEEEEEecC-----CcEEEEEccCCeE
Q psy1242 347 DSRFLLACGFWD-----NSFRVFSTDNARI 371 (540)
Q Consensus 347 dg~~llasgs~D-----gsv~iwd~~~g~~ 371 (540)
+++ |++.|+.+ +.+.+||..+.+-
T Consensus 61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp TTE-EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCE-EEEEeCcCCCccccceEEECCCCCce
Confidence 555 67777755 3588888876653
No 343
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=43.07 E-value=2.1e+02 Score=26.63 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEE
Q psy1242 409 ADCFIASGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----PVLVH 478 (540)
Q Consensus 409 dg~~l~sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~v~iw 478 (540)
+++.++.|+.+ ..+.++|..+.+...+. .+........++.+ ++.+++.|+.++ .+.++
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---------~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA---------PMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECC---------CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECC---------CCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEE
Confidence 56777777643 35777887654432211 11111111122222 566777776543 35555
Q ss_pred eCCCcEEEEecC-CCCCCCceEEEEeeCCCEEEEec-C-----CeEEEEecCCc
Q psy1242 479 TTFGDLLRSLDP-PSGFASPESVVMSREGVIVVNYE-R-----GHIAAFTMNGN 525 (540)
Q Consensus 479 ~~~g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~-d-----g~I~lw~~~g~ 525 (540)
+.....-..+.. +... .-.+++ .-++++++.|. + ..+.+||+...
T Consensus 190 d~~~~~W~~~~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 190 YPERNEWRMITAMNTIR-SGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp ETTTTEEEECCCCSSCC-BSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCeEeeCCCCCCcc-ccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 553332222221 1111 111222 23666666653 2 56888988754
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.79 E-value=2.1e+02 Score=26.67 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=15.2
Q ss_pred CCcEEEEEeCC------CcEEEEEcCCCc
Q psy1242 409 ADCFIASGSAD------CTVLLWHWNART 431 (540)
Q Consensus 409 dg~~l~sgs~D------gtV~lWd~~~~~ 431 (540)
+++.++.|+.+ ..+.++|..+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 67777777642 357888876644
No 345
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.72 E-value=51 Score=38.14 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=25.1
Q ss_pred ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNART 431 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~ 431 (540)
.+.+++..+ +..+++|-+.|+++|+|++.+++
T Consensus 239 ~~vs~~~~~----~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLS----TYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEET----TTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccC----CccEEEEEeCCCEEEEEECCCCC
Confidence 344555556 77899999999999999987743
No 346
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.69 E-value=72 Score=33.93 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=51.6
Q ss_pred CEEEEEEcCCCCEEEEEeCC----------CcEEEE--e-CCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-----cC
Q psy1242 453 PVTSVAISAELGLVVSGSQL----------GPVLVH--T-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-----ER 514 (540)
Q Consensus 453 ~V~~v~~spdg~~lasgs~D----------g~v~iw--~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-----~d 514 (540)
..--|+|++.|.+++.-..+ +.-.+| . .+|++.+-+.++.++ .++.++|+||++.|... ++
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga-E~TG~~fspDg~tlfvniQHPGe~ 555 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-EVTGISFSPDQKTLFVGIQHPGEN 555 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC-EEEEEEECTTSSEEEEEEESTTTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc-cCcCeeECCCCCEEEEEEECCCCC
Confidence 34568999999977654432 122334 3 368888888887664 68999999999988763 11
Q ss_pred ----------------CeEEEEecCCcEEEee
Q psy1242 515 ----------------GHIAAFTMNGNRLRHE 530 (540)
Q Consensus 515 ----------------g~I~lw~~~g~~l~~~ 530 (540)
..|.||..+|..|.+.
T Consensus 556 ~~s~~p~~~~~~~pr~~~v~i~r~dgg~ig~~ 587 (592)
T 3zwu_A 556 GGSTFPEHLPNGKPRSSVMAITREDGGIVGAH 587 (592)
T ss_dssp SCCCTTTCCTTCCCCCEEEEEEETTCCCTTSC
T ss_pred CCCCCCCCCCCCCCcCeEEEEEecCCCEeCcc
Confidence 1467777777665544
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=38.00 E-value=2e+02 Score=30.96 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=17.1
Q ss_pred CCcEEEEEeCCC--cEEEEEcCCCcc
Q psy1242 409 ADCFIASGSADC--TVLLWHWNARTQ 432 (540)
Q Consensus 409 dg~~l~sgs~Dg--tV~lWd~~~~~~ 432 (540)
++..++.|+.++ .+.+||..+...
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCce
Confidence 577888887655 688888776443
No 348
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=35.73 E-value=9.1 Score=38.68 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCCCceecCCccCCcCccCCCccchhhhcCCCccccCCCCCCCCCCc
Q psy1242 134 PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYP 180 (540)
Q Consensus 134 ~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~fg~~~~~~~~~~~~~~ 180 (540)
..|....+|+++..|+-|+ ..|...|+..... .+++++.-|.+.
T Consensus 279 ~~d~kElIPEFf~~Pe~l~--N~n~~~lG~~~~g-~~v~DV~LP~Wa 322 (414)
T 1t77_A 279 TSDIKELIPEFYYLPEMFV--NFNNYNLGVMDDG-TVVSDVELPPWA 322 (414)
T ss_dssp TTCCCCBCGGGGTCGGGGS--CTTCCCCCBCTTS-CBCSSCBCCTTC
T ss_pred CCCccccCchhhcChHhhc--cccCCccccccCC-CCCCceeCCCCC
Confidence 4556689999999999999 5566554432111 356677777764
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.47 E-value=1.9e+02 Score=32.64 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242 453 PVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD 489 (540)
Q Consensus 453 ~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~ 489 (540)
.+.+++..++..++++-|.|+++|+|+. +|+++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677888888889999999999999975 888887754
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=35.25 E-value=4.5e+02 Score=28.16 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=77.1
Q ss_pred cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425 (540)
Q Consensus 346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW 425 (540)
.+|. | -.|+.+ -+..+|..+++.. .+..... .-....|.++.... +|...+ |+..| +..+
T Consensus 111 ~~g~-l-Wigt~~-Gl~~~~~~~~~~~-~~~~~~~----------~l~~~~i~~i~~d~----~g~lWi-gt~~G-l~~~ 170 (758)
T 3ott_A 111 QGDT-L-WLGALN-GLYTYQLQSRKLT-SFDTRRN----------GLPNNTIYSIIRTK----DNQIYV-GTYNG-LCRY 170 (758)
T ss_dssp ETTE-E-EEEETT-EEEEEETTTCCEE-EECHHHH----------CCSCSCEEEEEECT----TCCEEE-EETTE-EEEE
T ss_pred cCCc-E-EEEcCC-cceeEeCCCCeEE-EeccCCC----------CcCCCeEEEEEEcC----CCCEEE-EeCCC-HhhC
Confidence 4565 3 344444 6788888765543 2210000 01134688888876 666544 44444 5566
Q ss_pred EcCCCcccccCCCCCCcceEEec--c----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242 426 HWNARTQSIVGETDTPTPRATLT--G----HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE 498 (540)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~~~l~--~----h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~ 498 (540)
+..... ...+. . ....|.++....++..|..|+..| +..++. +++.......... .|.
T Consensus 171 ~~~~~~------------~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l~~~~~~~~~~~~~~~l~~~--~i~ 235 (758)
T 3ott_A 171 IPSNGK------------FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-LFQYFPSTGQIKQTEAFHNN--SIK 235 (758)
T ss_dssp ETTTTE------------EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-EEEEETTTTEEEEEEEEEEE--EEE
T ss_pred ccCCCc------------eEEecCCCccccccceeEEEEEECCCCEEEEEECCC-CeEEcCCCCeEEeccCCCCC--eEE
Confidence 654321 11111 0 123488888887776544455444 444444 4443221111122 467
Q ss_pred EEEEeeCCCEEEEecCCeEEEEecCCcEEEe
Q psy1242 499 SVVMSREGVIVVNYERGHIAAFTMNGNRLRH 529 (540)
Q Consensus 499 ~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~ 529 (540)
++....+|.+.+.. ++-+.+++.+...+..
T Consensus 236 ~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 236 SLALDGNGDLLAGT-DNGLYVYHNDTTPLQH 265 (758)
T ss_dssp EEEECTTCCEEEEE-TTEEEEECCTTSCCEE
T ss_pred EEEEcCCCCEEEEe-CCceeEEecCCCcEEE
Confidence 78877788876665 4567888876544433
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=34.69 E-value=4.5e+02 Score=28.08 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=74.3
Q ss_pred cCCCEEEEEEecC----CcEEEEEccCCeEEEEE-ecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242 346 VDSRFLLACGFWD----NSFRVFSTDNARIVQII-FGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC 420 (540)
Q Consensus 346 pdg~~llasgs~D----gsv~iwd~~~g~~~~~l-~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg 420 (540)
.++. |++.|+.+ +.+.+||..+++-...- ...... .......-.++.+.. +++.++.||.++
T Consensus 396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~--------~p~~R~~hs~~~~~~----~~~lyv~GG~~~ 462 (695)
T 2zwa_A 396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE--------VPVARMCHTFTTISR----NNQLLLIGGRKA 462 (695)
T ss_dssp CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSC--------CCCCCBSCEEEEETT----TTEEEEECCBSS
T ss_pred ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCC--------CCccccceEEEEEcc----CCEEEEEcCCCC
Confidence 4555 67777653 46888888876533221 000000 011111223444432 456777777543
Q ss_pred ------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCcEEEEecC--
Q psy1242 421 ------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG--PVLVHTTFGDLLRSLDP-- 490 (540)
Q Consensus 421 ------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg--~v~iw~~~g~~~~~l~~-- 490 (540)
.+.++|..+.+...++. .+ ....+| +++.-.++.+++.|+.++ .+.+++.....-..+..
T Consensus 463 ~~~~~~dv~~yd~~t~~W~~~~~----~p-~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 463 PHQGLSDNWIFDMKTREWSMIKS----LS-HTRFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp TTCBCCCCEEEETTTTEEEECCC----CS-BCCBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred CCCccccEEEEeCCCCcEEECCC----CC-CCcccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence 46677766543322110 00 111122 222223778888887654 56667653333333322
Q ss_pred --CCCCCCceEEEEeeC-CCEEEEec---C-----CeEEEEecCCc
Q psy1242 491 --PSGFASPESVVMSRE-GVIVVNYE---R-----GHIAAFTMNGN 525 (540)
Q Consensus 491 --~~~~~~v~~l~fspd-g~~l~s~~---d-----g~I~lw~~~g~ 525 (540)
+.......++++..+ +++++.|+ + +.+.+||+...
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 111111233555555 66666643 2 35888888743
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=31.40 E-value=4.3e+02 Score=26.80 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=58.6
Q ss_pred EEEEEEecCCC-EEEEEEecCCcEEEEEccCCe---EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242 339 HNCFVTTVDSR-FLLACGFWDNSFRVFSTDNAR---IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA 414 (540)
Q Consensus 339 ~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~---~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~ 414 (540)
-..+++.|||. +|+++ ...|.|++++..... .+..+.. .+... ...+.++....|+++|....++.+.+
T Consensus 16 P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~---~~~~g---~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHK---LVQSG---IKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp EEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTT---TBCCC---CSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred ceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcc---eeccC---ccccCCCcceeeEeCCCCcCCCEEEE
Confidence 35678889985 44444 568999999754221 1111100 00000 00012467889999982111244444
Q ss_pred EEeC--C----------CcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242 415 SGSA--D----------CTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQL 472 (540)
Q Consensus 415 sgs~--D----------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~D 472 (540)
+-+. + ..|.-|.+........ .....+.+..+. ........|+|.|||.+.++.+..
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQV-DLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSB-CGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCcc-CCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 4332 1 1333354432110000 000112222221 112245789999999877766543
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.59 E-value=1.5e+02 Score=31.44 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=39.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC----------C--cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242 452 QPVTSVAISAELGLVVSGSQL----------G--PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY 512 (540)
Q Consensus 452 ~~V~~v~~spdg~~lasgs~D----------g--~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~ 512 (540)
.....|+|.++|.+.+.-... + .|...+. +|++.+.+..+..+ .++.++|+||++.|...
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~a-EpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-EVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTC-EEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCc-cccCCEECCCCCEEEEE
Confidence 346778999999877733211 1 2333344 67777766655442 57999999999988763
No 354
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.91 E-value=6e+02 Score=26.70 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=26.3
Q ss_pred cCCCCEEEEEEcCCC--CEEEEEeCC-----CcEEEEeCCCcEEEEecCC
Q psy1242 449 GHEQPVTSVAISAEL--GLVVSGSQL-----GPVLVHTTFGDLLRSLDPP 491 (540)
Q Consensus 449 ~h~~~V~~v~~spdg--~~lasgs~D-----g~v~iw~~~g~~~~~l~~~ 491 (540)
+|.+.+....|.|+. ..++.+..+ |.......+|+.+......
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 788877777787763 355555544 3333334588887766543
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=25.14 E-value=3.6e+02 Score=25.08 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=33.4
Q ss_pred cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy1242 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP 474 (540)
Q Consensus 395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~ 474 (540)
..|..|+... ...++. . ||.|..|-.+...+. +.|.. -...|..|+..... .+.-. ||.
T Consensus 63 ~~i~~ia~G~-----~hs~~l-~-~G~v~~wG~n~~Gql-------g~P~~----~~~~v~~ia~G~~h--s~al~-~G~ 121 (282)
T 3qhy_B 63 SGVDAIAAGN-----YHSLAL-K-DGEVIAWGGNEDGQT-------TVPAE----ARSGVDAIAAGAWA--SYALK-DGK 121 (282)
T ss_dssp SCCCEEEECS-----SEEEEE-E-TTEEEEEECCTTSTT-------CCCGG----GSSSEEEEEEETTE--EEEEE-TTE
T ss_pred CCEEEEEeCC-----CEEEEE-E-CCEEEEeeCCCCCCC-------CCCcc----cCCCeEEEECcCCE--EEEEe-CCe
Confidence 3566666543 333343 4 899999975532111 11111 12357667665443 33334 888
Q ss_pred EEEE
Q psy1242 475 VLVH 478 (540)
Q Consensus 475 v~iw 478 (540)
|..|
T Consensus 122 v~~w 125 (282)
T 3qhy_B 122 VIAW 125 (282)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8888
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=22.70 E-value=5.6e+02 Score=25.24 Aligned_cols=154 Identities=7% Similarity=0.051 Sum_probs=83.9
Q ss_pred CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc----CcceEEEEeccCccCC----CcEEEEEeCC
Q psy1242 348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH----YGVVTCLSRSECNITA----DCFIASGSAD 419 (540)
Q Consensus 348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h----~~~Vt~l~~sp~~~~d----g~~l~sgs~D 419 (540)
+.+..++-+..+.|.|+|+.+++..+.+..+...- ......+.|. ...|..|+++| + ++.|.-....
T Consensus 170 ~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp----~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 170 ETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLGD----RDSEGNRPAYYLAGS 244 (381)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEEEECC----CCTTSCCEEEEEESS
T ss_pred ccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEEEecC----CcCCCCeEEEEEECC
Confidence 34555666678899999999999887662111110 0011111221 35799999999 6 6777766654
Q ss_pred CcEEEEEcCCCcccccCCCCCCcceEEeccCC---CCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCC-c----EEEEe-c
Q psy1242 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHE---QPVTSVAIS-AELGLVVSGSQLGPVLVHTTFG-D----LLRSL-D 489 (540)
Q Consensus 420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~v~~s-pdg~~lasgs~Dg~v~iw~~~g-~----~~~~l-~ 489 (540)
+ -+++.+.+.-. ........++.+ |.. ..-..+++. .+|.++++--....|..|+..+ . ....+ +
T Consensus 245 s-~~ly~V~T~~L---~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~ 319 (381)
T 3q6k_A 245 A-IKVYSVNTKEL---KQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT 319 (381)
T ss_dssp C-SEEEEEEHHHH---SSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE
T ss_pred C-CcEEEEEHHHh---hCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE
Confidence 4 23454432110 000001222322 222 233455665 5677777777888888897765 2 12222 2
Q ss_pred CCCCCCCceEEEEeeCCCEEEEe
Q psy1242 490 PPSGFASPESVVMSREGVIVVNY 512 (540)
Q Consensus 490 ~~~~~~~v~~l~fspdg~~l~s~ 512 (540)
.. ...-+..+++.++|.+-+.+
T Consensus 320 d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 320 SS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CT-TCCSEEEEEECTTSCEEEEE
T ss_pred CC-CccccCeEEECCCCeEEEEE
Confidence 22 32346778887777655544
No 357
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=22.55 E-value=90 Score=30.53 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.5
Q ss_pred CCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242 505 EGVIVVNYERGHIAAFTMN-GNRLRHES 531 (540)
Q Consensus 505 dg~~l~s~~dg~I~lw~~~-g~~l~~~~ 531 (540)
+|.+++.+.+|++...|+. |+.+-.+.
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 4444444567888888876 88887775
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.92 E-value=1e+02 Score=33.45 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=24.3
Q ss_pred ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNART 431 (540)
Q Consensus 396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~ 431 (540)
.|.|+.+ +..++++-+.|+++|+|++.+.+
T Consensus 223 ~Is~~~~------~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 223 VISCKLF------HERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EEEEEEE------TTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEecc------CCcEEEEEEcCCeEEEEEcCCCc
Confidence 4666554 56799999999999999998754
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.23 E-value=68 Score=37.10 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.3
Q ss_pred EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEE
Q psy1242 341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQII 375 (540)
Q Consensus 341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l 375 (540)
+++..++.++ +++-+.|+++|||++.+++++.+.
T Consensus 242 s~~~~~~~~~-lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 242 SMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CCEEETTTTE-EEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EeeccCCccE-EEEEeCCCEEEEEECCCCCeEEee
Confidence 3445677775 577789999999999999998775
Done!