RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1242
(540 letters)
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 304
Score = 130 bits (329), Expect = 7e-35
Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 15 FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
F Y + + I GR+YNDLNQYPVFPWV+TNY+S+ELDL+L TN+RDLSKPIGALNP R A
Sbjct: 38 FEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAA 97
Query: 75 YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVP 111
+F ERY SWE + + FHYGTHYST +VL WL+R+
Sbjct: 98 FFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 134
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 55.5 bits (132), Expect = 6e-09
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 36/145 (24%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------RIVQIIF 391
L G D S +++ Q GH + + R+ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 392 GHYGVVTCLSRSECNITADCF------IASGSADCTVLLWHWNARTQSIVGETDTPTPRA 445
+ C IT+ F + +G D +W
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA-----------LKADRAG 306
Query: 446 TLTGHEQPVTSVAISAELGLVVSGS 470
L GH+ V+ + ++ + V +GS
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 41.3 bits (95), Expect = 2e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
LL G+ D + V+ A ++ GH V+ + G
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC----LGVTDDG--------------- 324
Query: 411 CFIASGSADCTVLLWH 426
+A+GS D + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.001
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
SG+ D + LW R T TGHE + ++
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR-----------EGMCRQTFTGHESDINAICFFPNGN 239
Query: 465 LVVSGSQLGPVLVH 478
+GS +
Sbjct: 240 AFATGSDDATCRLF 253
Score = 36.6 bits (83), Expect = 0.005
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 443 PRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF 481
R TL GH + ++ + L+VS SQ G +++ ++
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85
Score = 33.6 bits (75), Expect = 0.055
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
R + + GH + + + + S S D +++W T
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDS----RLLVSASQDGKLIIWDSY-----------TTNKV 90
Query: 445 ATLTGHEQPVTSVAIS 460
+ V + A +
Sbjct: 91 HAIPLRSSWVMTCAYA 106
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 52.1 bits (123), Expect = 6e-08
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 15/162 (9%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
L+A D + RV+ + H VV + +
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216
Query: 411 -CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG 469
F+ SGS D T+ +W + T TL GH+ V V + ++S
Sbjct: 217 GPFLLSGSRDKTIKMWDVS-----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 470 SQLGPVLV-HTTFGDLLRSLDPPSGFASPESVVMSREGVIVV 510
+ + V +++L+ F + S+ + VV
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVT--SLDFHKTAPYVV 305
Score = 51.7 bits (122), Expect = 8e-08
Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 20/147 (13%)
Query: 324 KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT 383
+ H + + + F + + + I + V T
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK-----MWDVST 236
Query: 384 SRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTP 443
+ + GH V + FI S + D T+ +W +
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDY-----------KNKRC 281
Query: 444 RATLTGHEQPVTSVAISAELGLVVSGS 470
TL HE VTS+ VV+GS
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGS 308
Score = 37.8 bits (86), Expect = 0.002
Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 24/192 (12%)
Query: 238 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPG 297
+ + P+ + + T+ + V T + +R + + SY+
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204
Query: 298 SPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV----DSRFLLA 353
+ + P + + + + + V H+ +V V +F+L+
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264
Query: 354 CGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413
C D + RV+ N R ++ + H VTS + F ++
Sbjct: 265 CA-DDKTLRVWDYKNKRCMKTLNAHEHFVTS----LDFHKTA---------------PYV 304
Query: 414 ASGSADCTVLLW 425
+GS D TV +W
Sbjct: 305 VTGSVDQTVKVW 316
Score = 37.8 bits (86), Expect = 0.002
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 440 TPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPSG 493
P + L+GH PVT V ++VS S+ + V GD R+L +
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/215 (12%), Positives = 49/215 (22%), Gaps = 16/215 (7%)
Query: 339 HNCFVTTVD---SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG 395
H VT V ++ D + +V+ + + + GH V
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQS------------IVGETDTPTP 443
+ + + + + E T
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 444 RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG-DLLRSLDPPSGFASPESVVM 502
T TGH + V V + + L+ S S V V + L S
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 503 SREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQ 537
+ G L S + ++
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 47.9 bits (112), Expect = 2e-06
Identities = 48/297 (16%), Positives = 89/297 (29%), Gaps = 35/297 (11%)
Query: 181 RDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMM-FSTVLDDVCM 239
+D + S + D+ + S+ + D + A I + + + +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 240 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSP 299
S V+ + T+ + + T + +I A S Y
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL- 225
Query: 300 PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDN 359
D + S V + + + V T D + +++ D
Sbjct: 226 --------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDR 276
Query: 360 SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419
S ++++ NA + GH V ++ ++ D +I SGS D
Sbjct: 277 SVKLWNLQNANNKSDSKTPN---SGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKD 329
Query: 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAI------SAELGLVVSGS 470
VL W + P L GH V SVA+ E + +GS
Sbjct: 330 RGVLFWD-----------KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Score = 39.0 bits (89), Expect = 0.001
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 13/77 (16%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
+ G D + + + ++ GH V S ++
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-------------VAVANGSSLGPEY 368
Query: 411 CFIASGSADCTVLLWHW 427
A+GS DC +W +
Sbjct: 369 NVFATGSGDCKARIWKY 385
Score = 36.3 bits (82), Expect = 0.008
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
+ +IA+GS D V +W + + TGH+ V SV + +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFL----VERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 465 LVVSGSQLGPVLVH 478
VVSGS V +
Sbjct: 268 SVVSGSLDRSVKLW 281
Score = 34.8 bits (78), Expect = 0.026
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQ-------SIVGETDTPTP 443
H VV C+ S ++A+G + T ++ + + S +
Sbjct: 59 LDHTSVVCCVKFSNDG----EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113
Query: 444 RATLTGHEQPVTSVAISAELGLVVSGSQ 471
++ + + SV S + + +G++
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAE 141
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 46.0 bits (107), Expect = 7e-06
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 397 VTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS 456
++C + ++ IA + V ++ + L H VT
Sbjct: 10 ISCHAWNKDR----TQIAICPNNHEVHIYEK---------SGNKWVQVHELKEHNGQVTG 56
Query: 457 VAISAELGLVVSGSQLGPVLVH 478
V + + +V+ V
Sbjct: 57 VDWAPDSNRIVTCGTDRNAYVW 78
Score = 37.5 bits (85), Expect = 0.003
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 17/78 (21%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
+A ++ ++ + VQ+ + H G VT + + +
Sbjct: 21 QIAICPNNHEVHIYEKSGNKWVQV-------------HELKEHNGQVTGVDWAPDS---- 63
Query: 411 CFIASGSADCTVLLWHWN 428
I + D +W
Sbjct: 64 NRIVTCGTDRNAYVWTLK 81
Score = 32.5 bits (72), Expect = 0.11
Identities = 7/77 (9%), Positives = 18/77 (23%)
Query: 360 SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419
S R + + + H V+ +S + D
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 420 CTVLLWHWNARTQSIVG 436
+ +W + ++
Sbjct: 351 GGMSIWDVRSLESALKD 367
Score = 27.5 bits (59), Expect = 4.7
Identities = 13/151 (8%), Positives = 36/151 (23%), Gaps = 34/151 (22%)
Query: 354 CGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413
V + N V + V + + + L + +
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257
Query: 414 ASGSADCTVLLWHWNARTQSI--VGETDTPTPRAT------------------------- 446
+ DC +L+ +++ + G D P +
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317
Query: 447 ---LTGHEQPVTSVAISAE----LGLVVSGS 470
+ H+ V+ +++ + +
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 44.5 bits (103), Expect = 2e-05
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 392 GHYG-VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
GH V+TCL D ++ +G+ D + ++ ++ L+GH
Sbjct: 10 GHMTSVITCLQFE------DNYVITGADDKMIRVY-----------DSINKKFLLQLSGH 52
Query: 451 EQPVTSVAISAELGLVVSGS 470
+ V ++ + G++VSGS
Sbjct: 53 DGGVWALKYAHG-GILVSGS 71
Score = 37.6 bits (85), Expect = 0.003
Identities = 18/243 (7%), Positives = 47/243 (19%), Gaps = 16/243 (6%)
Query: 236 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAET 295
+ P + + P V V H ++ + +
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183
Query: 296 PGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACG 355
+ + +R + S +R L
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243
Query: 356 FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415
R+ + + H + + I
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY-----VSDNILV 298
Query: 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV 475
++ +++ + A + + SV + LV + + G
Sbjct: 299 SGSENQFNIYNLRSGKL----------VHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347
Query: 476 LVH 478
+
Sbjct: 348 FLE 350
Score = 34.9 bits (78), Expect = 0.022
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 20/89 (22%)
Query: 340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC 399
+ T S +L G +N F +++ + ++V I +
Sbjct: 285 SAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH--------------ANILKDADQIWS 329
Query: 400 LSRSECNITADCFIASGSADCTVLLWHWN 428
++ +A+ D L +
Sbjct: 330 VNFKG-----KTLVAAVEKDGQSFLEILD 353
Score = 30.2 bits (66), Expect = 0.69
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 24/127 (18%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS------------------------RI 386
+ G D RV+ + N + + + GH G V + +
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84
Query: 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT 446
T +I +GS D T+ +W + + P
Sbjct: 85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144
Query: 447 LTGHEQP 453
T E P
Sbjct: 145 HTPEENP 151
Score = 26.8 bits (57), Expect = 7.1
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 444 RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPSGFASPESVVM 502
R TL GH V + + E V++G+ + V + L L G ++
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW--ALKY 61
Query: 503 SREGVIV 509
+ G++V
Sbjct: 62 AHGGILV 68
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 44.0 bits (102), Expect = 3e-05
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 383 TSRIVQIIFGHYG-VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTP 441
+ +++ GH V+TCL I SGS D T+ +W T
Sbjct: 5 ELKSPKVLKGHDDHVITCLQFC------GNRIVSGSDDNTLKVWSAV-----------TG 47
Query: 442 TPRATLTGHEQPVTSVAIS 460
TL GH V S +
Sbjct: 48 KCLRTLVGHTGGVWSSQMR 66
Score = 36.7 bits (83), Expect = 0.005
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 29/157 (18%)
Query: 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------- 384
+ + D +++ D S RV+ + + + GH + +
Sbjct: 178 NRVYSLQFDGIHVVSGS-LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 236
Query: 385 --------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVG 436
+ Q + G S C F+ + S D TV LW G
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT------G 290
Query: 437 ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG 473
E G V + S + GS+ G
Sbjct: 291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
Score = 29.8 bits (65), Expect = 0.85
Identities = 16/78 (20%), Positives = 29/78 (37%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
+ G DN+ +V+S + ++ + GH G V S ++ G + T +
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88
Query: 411 CFIASGSADCTVLLWHWN 428
C TV H +
Sbjct: 89 CIHTLYGHTSTVRCMHLH 106
Score = 29.4 bits (64), Expect = 1.1
Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 353 ACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF 412
D + +++ ++ + G GVV + S +
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTL----------ESGGSGGVVWRIRASNTKLVCAVG 323
Query: 413 IASGSADCTVLLWHWNA 429
+G+ + +L+ ++
Sbjct: 324 SRNGTEETKLLVLDFDV 340
Score = 27.5 bits (59), Expect = 4.6
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 437 ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPSG 493
L GH+ V + + +VSGS + V G LR+L +G
Sbjct: 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 42.9 bits (99), Expect = 5e-05
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII 390
F + L L+ G DN+ R++ + ++++ GH +V
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR------- 222
Query: 391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
C + I SG+ D + +W + TL H
Sbjct: 223 --------------CIRFDNKRIVSGAYDGKIKVW--DLVAALDPRAPAGTLCLRTLVEH 266
Query: 451 EQPVTSVAISAELGLVVSGS 470
V + +VS S
Sbjct: 267 SGRVFRLQFDE--FQIVSSS 284
Score = 39.1 bits (89), Expect = 9e-04
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398
+ G +D +V+ A + G ++ + H G V
Sbjct: 218 EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT------LCLRTLVEHSGRVF 271
Query: 399 CLSRSECNITADCFIASGSADCTVLLW 425
L + I S S D T+L+W
Sbjct: 272 RLQFD------EFQIVSSSHDDTILIW 292
Score = 37.9 bits (86), Expect = 0.002
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE 451
V CL D I SG D T+ +W N T + LTGH
Sbjct: 13 ETSKGVYCLQYD------DQKIVSGLRDNTIKIWDKN-----------TLECKRILTGHT 55
Query: 452 QPVTS 456
V
Sbjct: 56 GSVLC 60
Score = 30.6 bits (67), Expect = 0.48
Identities = 14/78 (17%), Positives = 24/78 (30%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
+ G DN+ +++ + +I+ GH G V G R T +
Sbjct: 27 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 86
Query: 411 CFIASGSADCTVLLWHWN 428
VL +N
Sbjct: 87 MLNTLIHHCEAVLHLRFN 104
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 42.1 bits (97), Expect = 1e-04
Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+IVQI ++ + + S D ++ ++ ++ + +++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAKNV--------DL 49
Query: 445 ATLTGHEQPVTSVAISAELGLVV 467
++ P+ L +
Sbjct: 50 LQSLRYKHPLLCCNFIDNTDLQI 72
Score = 38.3 bits (87), Expect = 0.002
Identities = 25/282 (8%), Positives = 61/282 (21%), Gaps = 20/282 (7%)
Query: 189 VRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSP 248
++S Y +L +I ++ + G E + L + +L
Sbjct: 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109
Query: 249 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLD 308
+ V+ I N + + + + +
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169
Query: 309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
+ + + AC D V D+
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225
Query: 369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
+ R+ V + S + F+ + +D + W+
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCWNLQ 281
Query: 429 ARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS 470
R + + V I+ ++ +
Sbjct: 282 TRKK-----------IKNFAKFN-EDSVVKIACSDNILCLAT 311
Score = 26.4 bits (56), Expect = 9.5
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
LL WD S V+ D + + + C + + D
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQS------------LRYKHPLLCCNFIDNT---D 69
Query: 411 CFIASGSADCTVLLWHWN 428
I G+ +L
Sbjct: 70 LQIYVGTVQGEILKVDLI 87
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 40.7 bits (93), Expect = 2e-04
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 14/75 (18%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
I Q+ +GH +T LS S + S A+ + W + R
Sbjct: 3 SIDQVRYGHNKAITALSSSADG----KTLFSADAEGHINSWDISTGIS----------NR 48
Query: 445 ATLTGHEQPVTSVAI 459
H +T +
Sbjct: 49 VFPDVHATMITGIKT 63
Score = 31.9 bits (70), Expect = 0.17
Identities = 26/228 (11%), Positives = 50/228 (21%), Gaps = 21/228 (9%)
Query: 202 RWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH 261
VDS + +++ L + + + +++ ++ N+
Sbjct: 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 144
Query: 262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP 321
V Q + AS+ P L +
Sbjct: 145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI 204
Query: 322 VPKRHLGDNFSQKLRVRHNCFVTTVDSR----FLLACGFWDNSFRVFSTDNARIVQIIFG 377
+ + S LA G DNS V++ + II
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW 425
V + + I S D + W
Sbjct: 265 G------------AHAMSSVNSVIWLN-----ETTIVSAGQDSNIKFW 295
Score = 31.1 bits (68), Expect = 0.32
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 446 TLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477
GH + +T+++ SA+ + S G +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINS 38
Score = 31.1 bits (68), Expect = 0.34
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
+ +A+GS D +V++W+ N + P H + I
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMN---------KPSDHPIIIKGAHAMSSVNSVIWLNET 281
Query: 465 LVVSGSQ 471
+VS Q
Sbjct: 282 TIVSAGQ 288
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.8 bits (88), Expect = 0.001
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 24/76 (31%)
Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
+++ I GH +T L+ + + SGS D ++ W +
Sbjct: 4 EVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSS---------------- 39
Query: 445 ATLTGHEQPVTSVAIS 460
+ H + S+ S
Sbjct: 40 SMHQDHSNLIVSLDNS 55
Score = 36.5 bits (82), Expect = 0.006
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG 469
+ +A+GS D + ++ + I L H+ V ++ +VS
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKII----------KALNAHKDGVNNLLWETP-STLVSS 275
Query: 470 SQLGPVLV 477
+
Sbjct: 276 GADACIKR 283
Score = 36.1 bits (81), Expect = 0.007
Identities = 21/224 (9%), Positives = 48/224 (21%), Gaps = 19/224 (8%)
Query: 203 WIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 262
G TA + + + T + L P ++
Sbjct: 81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 140
Query: 263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV 322
++ + A S + + + + +
Sbjct: 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200
Query: 323 PKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVV 382
+ + L+A G D + ++S
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-------------- 246
Query: 383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH 426
+I++ + H V L + S AD + W+
Sbjct: 247 PMKIIKALNAHKDGVNNLLWET-----PSTLVSSGADACIKRWN 285
Score = 30.3 bits (66), Expect = 0.54
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 440 TPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV 477
T++GH + +T++ ++ ++SGS G ++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIME 35
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 36.3 bits (82), Expect = 0.008
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
H VV ++ S + +G V +W + +P +
Sbjct: 48 LNHGEVVCAVTISNPT----RHVYTGG-KGCVKVWDISH------PGNKSPVSQLDCLNR 96
Query: 451 EQPVTSVAISAELGLVVSGSQLGP 474
+ + S + + ++ G +
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEAST 120
Score = 35.6 bits (80), Expect = 0.013
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 12/66 (18%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
+ S D + W + + ++ V S IS + +V+GS
Sbjct: 279 WFVSTGKDNLLNAW--RTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSG 326
Query: 472 LGPVLV 477
V
Sbjct: 327 DKKATV 332
Score = 32.9 bits (73), Expect = 0.100
Identities = 10/75 (13%), Positives = 16/75 (21%), Gaps = 20/75 (26%)
Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
DN + T + V S D
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQ----------------SKESSSVLSCDISVD----D 318
Query: 411 CFIASGSADCTVLLW 425
+I +GS D ++
Sbjct: 319 KYIVTGSGDKKATVY 333
Score = 27.1 bits (58), Expect = 5.3
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS 470
+AD + + G TL H + V +V IS V +G
Sbjct: 18 TADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG 70
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 35.6 bits (80), Expect = 0.013
Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 34/196 (17%)
Query: 346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC 405
+ F ++C D +V+ + +++ + + + H V+ + R
Sbjct: 22 ACNSFTVSCS-GDGYLKVW---DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF 77
Query: 406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA---- 461
+ +A+ S +L + ++ + ++ A
Sbjct: 78 ELC---LVATTSFSGDLLFYRITREDETKKV-IFEKLDLLDSDMKKHSFWALKWGASNDR 133
Query: 462 -ELGLVVSGSQLGPVLV-------------------HTTFGDLLRSLDPPSGFASPESVV 501
+V+ G + + S PS FA+ SV
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT--SVD 191
Query: 502 MSREGVIVVNYERGHI 517
+S G+I + G +
Sbjct: 192 ISERGLIATGFNNGTV 207
Score = 33.3 bits (74), Expect = 0.072
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT 446
H + +S + F S S D + +W +
Sbjct: 7 ANAGKAHDADIFSVSAC------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 447 LTGHEQPVTSVAI--SAELGLVVSGSQLGPVLV 477
H V + EL LV + S G +L
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93
Score = 31.4 bits (69), Expect = 0.30
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 20/122 (16%)
Query: 354 CGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCF 412
NSF + + I S + + V LS ++
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG----ET 303
Query: 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV----TSVAISAELGLVVS 468
+ S D + W + T TL H + +A+ +
Sbjct: 304 LCSAGWDGKLRFW-----------DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 469 GS 470
Sbjct: 353 PG 354
Score = 28.7 bits (62), Expect = 1.7
Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 13/133 (9%)
Query: 352 LACGFWDNSFRVF---STDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT 408
L + ++ + + + V+ T + SE
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE---- 194
Query: 409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS 468
IA+G + TV + + + ++ + + SV S + L+
Sbjct: 195 -RGLIATGFNNGTVQISELSTLRP-----LYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 469 GSQLGPVLVHTTF 481
T +
Sbjct: 249 AHDSNSFGCITLY 261
Score = 27.1 bits (58), Expect = 6.1
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 353 ACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG 395
WD R + + + H + + +G
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 35.3 bits (79), Expect = 0.017
Identities = 29/259 (11%), Positives = 67/259 (25%), Gaps = 24/259 (9%)
Query: 168 KLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRI-MS 226
K+ V T + V + + + W + V G + I
Sbjct: 88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147
Query: 227 PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS 286
+ + + + T A +R + +
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207
Query: 287 IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV 346
++ ++ G + S + + Q+ ++ +
Sbjct: 208 VRDVEFSPDSGE------FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261
Query: 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN 406
DS+ G D + RV+ ++ VQ + ++ V ++
Sbjct: 262 DSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--------------- 305
Query: 407 ITADCFIASGSADCTVLLW 425
T + I S S D T+ +
Sbjct: 306 -TGNGRIISLSLDGTLNFY 323
Score = 29.9 bits (65), Expect = 0.79
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 357 WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVTCLSRSECNITADCFIAS 415
+D + + + + G V GH VVT + S ++ S
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK--GSQYLCS 82
Query: 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS 460
G V++W W +S + ++ P++ ++
Sbjct: 83 GDESGKVIVWGWTFDKESN---SVEVNVKSEFQVLAGPISDISWD 124
Score = 29.1 bits (63), Expect = 1.3
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGS 470
A+ AD T+ +W T + TL + V + A G ++S S
Sbjct: 265 KFATVGADATIRVWDV---------TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 471 QLGPVLV 477
G +
Sbjct: 316 LDGTLNF 322
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.3 bits (74), Expect = 0.060
Identities = 11/66 (16%), Positives = 15/66 (22%), Gaps = 12/66 (18%)
Query: 413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL 472
I + +V + T T H T S SG
Sbjct: 32 IQYCN-GTSVYTV-----------PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 473 GPVLVH 478
G V +
Sbjct: 80 GNVRIW 85
Score = 29.9 bits (65), Expect = 0.74
Identities = 7/88 (7%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398
+T +A D + ++++ ++ + I
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------------IEDQQL 287
Query: 399 CLSRSECNITADCFIASGSADCTVLLWH 426
+ + + S SA+ + +
Sbjct: 288 GIIWT------KQALVSISANGFINFVN 309
Score = 28.7 bits (62), Expect = 2.0
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ-PVTSVAISAELGLVVSGS 470
IAS SAD T+ +W T T+ + + I +VS S
Sbjct: 252 KIASASADKTIKIW-----------NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300
Query: 471 QLGPVLV 477
G +
Sbjct: 301 ANGFINF 307
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 30.4 bits (68), Expect = 0.25
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 147 HPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTI 187
NNN VP+RH+ +F QK R R + +YP+ T+
Sbjct: 100 LEIGNNNVSVPERHIPSHF-QKFR-RSSASEMYPKTTEETV 138
Score = 27.7 bits (61), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 313 HPTSNNNAPVPKRHLGDNFSQKLR 336
NNN VP+RH+ +F QK R
Sbjct: 100 LEIGNNNVSVPERHIPSHF-QKFR 122
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 29.1 bits (63), Expect = 1.5
Identities = 9/89 (10%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA 461
+ + +L + R +T + +T + +SA
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---------------VTEVKNNLTDLRLSA 324
Query: 462 ELGLVVSGSQLGPV-LVHTTFGDLLRSLD 489
+ V+ G + + R+++
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 28.8 bits (63), Expect = 1.5
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 474 PVLVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLRH 529
++ H FG+ F P V ++ + +IV + I F G
Sbjct: 5 RMIYHCKFGEFGVM---EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQ 58
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 27.4 bits (59), Expect = 4.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 509 VVNYERGHIAAFTMNGNRLRHESHN 533
+V E+GH+A +N E N
Sbjct: 1 MVQVEKGHVAVVFLN----DPERRN 21
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 26.7 bits (57), Expect = 6.9
Identities = 14/164 (8%), Positives = 36/164 (21%), Gaps = 12/164 (7%)
Query: 333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG 392
+ ++ D + + + + + G
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 393 HYGVVTCL-SRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE 451
+ TA + + +L ++ + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP----------LP 279
Query: 452 QPVTSVAISAELGLVVSGSQLGPVLVH-TTFGDLLRSLDPPSGF 494
SV +S + V G LG + + + +D P
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 26.7 bits (57), Expect = 7.8
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 476 LVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLRH 529
+V G ++ P +G +P +V + + V V + + T + H
Sbjct: 205 VVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,093,674
Number of extensions: 99078
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 78
Length of query: 540
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,171,896
Effective search space: 527353200
Effective search space used: 527353200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)