BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12421
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSD 109
T++ AP T +R + Q + + + KP VKWY EL SK Y+ +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT--S 61
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHG 136
GV+++EI+DC +DSG Y+ V TN G
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKG 88
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
AP ++ ++ + +L C + G+P P +KWY+ +EL R Y MS ++
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ + ED G Y C+ATN+ G ET+ +++
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 54 VESAPNFTFLLRPRVMQVRQTC--KLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
E+AP F+ R + M VRQ +L ++G P P VK+Y+ E+ S D+ +S
Sbjct: 99 AETAPP-NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S+ I + PEDSG Y ATN G + ++V
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVS 113
AP FT L+ V+ T +SG P P V W++ + +S +S+SDG
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I +SG Y ATN G + ++V
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 55 ESAPNFTFLLRPRVMQVRQT--CKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
E+AP F+ R + M VRQ +L ++G P P VK+Y+ E+ S D+ +S +
Sbjct: 100 ETAPP-NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S+ I + PEDSG Y ATN G + ++V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVS 113
AP FT L+ V+ T +SG P P V W++ + +S +S+SDG
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I +SG Y ATN G + ++V
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 10 SLRYPQDNPRLRTR--AIPKTIP--AYVPEVQQVRRREP----LQITFWQETVESAPNFT 61
S RY + ++T+ A P+ +P + +R+ P ++ FW + E+ P F
Sbjct: 322 SSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRS-EAQPRF- 379
Query: 62 FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIID 118
+++P +V Q+ C + PP V W+K +REL + Y Y+ + I
Sbjct: 380 -IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 438
Query: 119 CKPEDSGEYKCVATNKHGTDE 139
K +D GEY A N +GT E
Sbjct: 439 VKGDDKGEYTVRAKNSYGTKE 459
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 10 SLRYPQDNPRLRTR--AIPKTIP--AYVPEVQQVRRREP----LQITFWQETVESAPNFT 61
S RY + ++T+ A P+ +P + +R+ P ++ FW + E+ P F
Sbjct: 428 SSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRS-EAQPRF- 485
Query: 62 FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIID 118
+++P +V Q+ C + PP V W+K +REL + Y Y+ + I
Sbjct: 486 -IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 544
Query: 119 CKPEDSGEYKCVATNKHGTDE 139
K +D GEY A N +GT E
Sbjct: 545 VKGDDKGEYTVRAKNSYGTKE 565
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 77 LLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C L G PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 136 GTD 138
G+D
Sbjct: 464 GSD 466
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 51 QETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYS 108
Q V+ P F L P R+++ + + C + G P V WYK E+ + + MS+
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 343
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATN 133
+ V +E+ + EDSG+Y C A N
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM--SYSDG 110
T+++ P F L V + +L + G P +V W+K E+ + ++ SYS+
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
+ +++ +P ++G+Y C N+ GT E
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 62 FLLRPRV--MQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID 118
F L+P + + ++ C ++G P + W K NRE+ +Y M+ + ++ ++
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 259
Query: 119 CKPEDSGEYKCVATNKHGTD 138
D+G+Y C A+N G D
Sbjct: 260 VTKGDAGQYTCYASNVAGKD 279
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 77 LLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C + G P + WYK + +L S Y M + + V S+ I D GEY C A N
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84
Query: 136 GTDETNCVVIV 146
G ++ V+++
Sbjct: 85 GAVASSAVLVI 95
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 79 CCLSGKPPPTVKWYKGNRELSKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
C ++G P V WYK + EL K D ++ S+ V +++I+ G+Y C A+N G
Sbjct: 123 CRINGSEPLQVSWYK-DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 137 T 137
T
Sbjct: 182 T 182
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 45 LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
L I +T P T RV++V T + C G P P + W K ++ +
Sbjct: 100 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR 159
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
S DG + +E + + ED G+Y+CVA N GT+ +
Sbjct: 160 YSLKDGFLQIE--NSREEDQGKYECVAENSMGTEHSKA 195
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP----EDS 124
++V C G PPP++ W K +++S + + + I+ +P D
Sbjct: 20 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 79
Query: 125 GEYKCVATNKHG 136
Y+CVA N G
Sbjct: 80 APYECVAENGVG 91
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 46 QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM 105
Q+TF+ + PN+ ++ + + ++ C +G+P PT +W K L RD +
Sbjct: 288 QLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RI 341
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
G +++ I++ D+G Y+CVA NKHG
Sbjct: 342 QIEQGTLNITIVNLS--DAGMYQCVAENKHG 370
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
T KL C G P PT+ W + + + R S+G+ +EI + + ED+G Y+CVA N
Sbjct: 221 TVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI--LEIPNFQQEDAGSYECVAEN 278
Query: 134 KHGTD 138
G +
Sbjct: 279 SRGKN 283
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 76 KLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP---EDSGEYKCVAT 132
KL C + G P P ++W ++ D M + VV ++ P +D+G Y+C+AT
Sbjct: 26 KLSCEVKGNPKPHIRWKLNGTDV---DIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 82
Query: 133 NKHGT 137
N GT
Sbjct: 83 NSFGT 87
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 46 QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM 105
Q+TF+ + PN+ ++ + + ++ C +G+P PT +W K L RD +
Sbjct: 289 QLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RI 342
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
G +++ I++ D+G Y+CVA NKHG
Sbjct: 343 QIEQGTLNITIVNLS--DAGMYQCVAENKHG 371
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
T KL C G P PT+ W + + + R S+G+ +EI + + ED+G Y+CVA N
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI--LEIPNFQQEDAGSYECVAEN 279
Query: 134 KHGTD 138
G +
Sbjct: 280 SRGKN 284
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 76 KLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP---EDSGEYKCVAT 132
KL C + G P P ++W ++ D M + VV ++ P +D+G Y+C+AT
Sbjct: 27 KLSCEVKGNPKPHIRWKLNGTDV---DIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 83
Query: 133 NKHGT 137
N GT
Sbjct: 84 NSFGT 88
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
RV++V T + C G P P + W K ++ + S DG + +E + + ED G+
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIE--NSREEDQGK 177
Query: 127 YKCVATNKHGTDETNC 142
Y+CVA N GT+ +
Sbjct: 178 YECVAENSMGTEHSKA 193
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP----EDS 124
++V C G PPP++ W K +++S + + + I+ +P D
Sbjct: 18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 125 GEYKCVATNKHG 136
Y+CVA N G
Sbjct: 78 APYECVAENGVG 89
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
AP T L + + ++ ++ C SG PPP + W+K N L + D + DG ++ I
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTI 68
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ ED G Y C A + G + I+
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
AP T L + + ++ ++ C SG PPP + W+K N L + D + DG ++ I
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTI 724
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ ED G Y C A + G + I+
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
G PPP +KWYK L + ++++ + ME+ + D+G Y + TN
Sbjct: 356 GYPPPEIKWYKNGIPL-ESNHTIKAGHVLTIMEVSE---RDTGNYTVILTN 402
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 85 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
P P K +L+ +S S +D ++ ME+ + +D G+Y C+A ++ T + +CVV
Sbjct: 599 PTPVCKNLDTLWKLNATMFSNSTND-ILIMELKNASLQDQGDYVCLAQDRK-TKKRHCVV 656
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51 QETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYS 108
Q V++ P F L P R+++ + + C + G P V WYK E+ + + MS+
Sbjct: 92 QLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATN 133
+ V +E+ + EDSG+Y C A N
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 77 LLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C L G PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 136 GT 137
G+
Sbjct: 272 GS 273
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 57 APNFTFLLRPRV--MQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVS 113
AP F F L+P + + ++ C ++G P + W K NRE+ +Y M+ + +
Sbjct: 4 APPF-FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTD 138
+ ++ D+G+Y C A+N G D
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 32 YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKW 91
Y E + ++ R+ Q + + P++ ++ + + C SGKP P V+W
Sbjct: 272 YECEAENIKGRDTYQGRI---IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 92 YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
+ + L+ ++ + S G + + EDSG Y+CVA NKHGT
Sbjct: 329 LRDGQPLASQN-RIEVSGGELRFSKLVL--EDSGMYQCVAENKHGT 371
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
L C PP T +W EL Y + D V+S + K +D+G Y+CVATN
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPV---KAKDAGSYQCVATN 83
Query: 134 KHGT 137
GT
Sbjct: 84 ARGT 87
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
Q L C G P P +KW K + + + S S+ ++ ++ +D ED G Y+C A
Sbjct: 223 QMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---SEPLLHIQNVDF--EDEGTYECEAE 277
Query: 133 NKHGTDETNCVVIV 146
N G D +I+
Sbjct: 278 NIKGRDTYQGRIII 291
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 47 ITFWQETVESAPNFTFLLRPRVMQ--------VRQTCKLLCCLSGKPPPTVKWYKGNREL 98
+T+ E + ++ T L+ P + + C +SGKP PTV W K +
Sbjct: 294 VTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 99 SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
DY G ++ I+ D G Y+CVA N+ G +++ +IV
Sbjct: 354 IPSDYFQIV--GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 62 FLLRP-RVMQVRQTCKLL-CCLSGKPPPTVKWYKGNR--ELSKRDYSMSYSDGVVSMEII 117
FL RP V+ + +L CC+SG PPP+ W +G +L + YS+ ++ +
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT 283
Query: 118 DCKPEDSGEYKCVATNKH 135
D +DSG Y CV T K+
Sbjct: 284 D---DDSGTYTCVVTYKN 298
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
T L C + G P PT+ W K ++L+ + G +++I +P DSG Y+C
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCS 195
Query: 131 ATNKHGTDETN 141
A N T N
Sbjct: 196 ARNPASTRTGN 206
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
V++ P + ++ + + C +GKP PTV+W + L+ ++ +
Sbjct: 290 VQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG---D 346
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
+ EDSG Y+CVA NKHGT
Sbjct: 347 LRFSKLSLEDSGMYQCVAENKHGT 370
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
V Q L C G P P +KW K + LS + ++ +++I ED G Y+C
Sbjct: 220 VGQQVTLECFAFGNPVPRIKWRKVDGSLSPQ-----WTTAEPTLQIPSVSFEDEGTYECE 274
Query: 131 ATNKHGTDETNCVVIV 146
A N G D +IV
Sbjct: 275 AENSKGRDTVQGRIIV 290
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
L C PP T +W E+ S G + + K +D+G Y+C+A+N G
Sbjct: 26 LACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVG 85
Query: 137 T 137
T
Sbjct: 86 T 86
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 77 LLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C L G PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 136 GT 137
G+
Sbjct: 272 GS 273
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 51 QETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYS 108
Q V+ P F L P R+++ + + C + G P V WYK E+ + + MS+
Sbjct: 92 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATN 133
+ V +E+ + EDSG+Y C A N
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 57 APNFTFLLRPRV--MQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVS 113
AP F F L+P + + ++ C ++G P + W K NRE+ +Y M+ + +
Sbjct: 4 APPF-FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTD 138
+ ++ D+G+Y C A+N G D
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLL--------CCLSGKPPPTVKWYKGNRELSKRDYS 104
VES ++P++ + K++ C G P P+V W KG+ L +
Sbjct: 88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRI 147
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
G S+ I + + ED+G+Y+CVA N GT
Sbjct: 148 AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 33/91 (36%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
E + AP T L V + +C + P P + W + + D S +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
+ I+ + D G Y C A N G +C
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESC 92
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 56 SAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--V 112
SAP L+ +P + V T LLC G P P+ +WYK E + R ++ +D V V
Sbjct: 216 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRKQAVVLNDRVKQV 274
Query: 113 SMEII--DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S +I D EDSG+Y CV N G + V+ V
Sbjct: 275 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKL------LCCLSGKPPPTVKWYKGNRELSKRDYSM 105
E+VE+ T L ++ QT C +G P TV W K + ++
Sbjct: 302 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-------AI 354
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
+S+ V+ +E + K ED G Y+C N + E +
Sbjct: 355 GHSESVLRIESV--KKEDKGMYQCFVRNDRESAEASA 389
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 56 SAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--V 112
SAP L+ +P + V T LLC G P P+ +WYK E + R ++ +D V V
Sbjct: 210 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRKQAVVLNDRVKQV 268
Query: 113 SMEII--DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S +I D EDSG+Y CV N G + V+ V
Sbjct: 269 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKL------LCCLSGKPPPTVKWYKGNRELSKRDYSM 105
E+VE+ T L ++ QT C +G P TV W K + ++
Sbjct: 296 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-------AI 348
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
+S+ V+ +E + K ED G Y+C N + E +
Sbjct: 349 GHSESVLRIESV--KKEDKGMYQCFVRNDRESAEASA 383
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY----SDGVVSMEIIDCKPE 122
+V++ +T +LC SG P P + W+K + + + S+ + +++I +
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 123 DSGEYKCVATNKHGT 137
D G+Y+CVATN GT
Sbjct: 178 DQGKYECVATNSAGT 192
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-MSYSDG 110
ET E+ P FT + +C +G P P + W K +++S + + + + DG
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 111 VVSMEIIDC--KPEDSGEYKCVATNKHG 136
S+ I P D Y+CVA+N G
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVG 88
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGE 126
+Q + L C + G PPP V W K + L++ D+ ++ + G + I+ DSG+
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188
Query: 127 YKCVATNKHGTDETNCVVIV 146
Y V NK+G++ ++ V V
Sbjct: 189 YGLVVKNKYGSETSDFTVSV 208
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPE 122
V++ + L C + GKP PT++W+K +S K+ + + + DG + + K +
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 123 DSGEYKCVATNKHG 136
D GEY CVA N+ G
Sbjct: 80 DGGEYWCVAKNRVG 93
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 37 QQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGN 95
Q V R LQI ++ P T + + +T L C G P PT+ W K
Sbjct: 94 QAVSRHASLQIAVLRDDFRVEPKDTRVAK------GETALLECGPPKGIPEPTLIWIKDG 147
Query: 96 ---RELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+L + S +V ++ I + +P D G YKC+A N GT E++ ++
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPE 122
V++ + L C + GKP PT++W+K +S K+ + + + DG + + K +
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 123 DSGEYKCVATNKHG 136
D GEY CVA N+ G
Sbjct: 80 DGGEYWCVAKNRVG 93
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 37 QQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGN 95
Q V R LQI ++ P T + + +T L C G P PT+ W K
Sbjct: 94 QAVSRHASLQIAVLRDDFRVEPKDTRVAK------GETALLECGPPKGIPEPTLIWIKDG 147
Query: 96 ---RELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+L + S +V ++ I + +P D G YKC+A N GT E++ ++
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
L C SG P P + WYK +L + + ++ I + EDSGEY C+A+NK G
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMG 299
Query: 137 T 137
+
Sbjct: 300 S 300
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRD--YSMSYSDGVVSMEI-IDCK 120
+ ++ R + C G P P+ W + +R + +D SM G + ++ +
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 121 PED-SGEYKCVATNKHGTDETN 141
PE+ GEY+C A NK GT +N
Sbjct: 85 PEEYEGEYQCFARNKFGTALSN 106
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
V++AP + + ++ + +L+C +G P PTV+W L + + +
Sbjct: 309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ D + Y+C +N+HG N V V
Sbjct: 369 IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD-GVV 112
+E AP+F+ +L+ + Q L C + G P P + W + + Y+ S + GV
Sbjct: 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVA 64
Query: 113 SMEIIDCKPEDSGEYKCVATNKHG 136
+ I D PED G Y C+A N G
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALG 88
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 62 FLLRPRVMQV--RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIID 118
FL RPR ++V +L C + G+PPP V W KG ++L+ + +DG + +
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTA 76
Query: 119 CKPEDSGEYKCVATN 133
P D+G Y C A N
Sbjct: 77 ALPTDAGVYVCRARN 91
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGE 126
+Q + L C + G PPP V W K + L+ D+ ++ + G + I+ DSG+
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGK 293
Query: 127 YKCVATNKHGTDETNCVVIV 146
Y V NK+G++ ++ V V
Sbjct: 294 YGLVVKNKYGSETSDFTVSV 313
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLL--CCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+ P+F L +V C +L C ++ K + WYK RE+S D + DG+
Sbjct: 6 TGPHFVEYLS---WEVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGIC 61
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDET 140
++ I + +D+G Y+ + + G D++
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKS 89
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
PN + +V++ +T +LC SG P P + W+K D+ S S+G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSASNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
+++I + D G+Y+CVATN G
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAG 188
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWY-KGNRELSKRDYSMSYSDG 110
ET E P F + ++ +C +G P P V W KG + S+R ++ + +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 111 VVSMEIIDC--KPEDSGEYKCVATNKHG 136
++ I P D Y+CVA N G
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVG 88
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
PN + +V++ +T +LC SG P P + W+K D+ S S+G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSASNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
+++I + D G+Y+CVATN G
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAG 188
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWY-KGNRELSKRDYSMSYSDG 110
ET E P F + ++ +C +G P P V W KG + S+R ++ + +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 111 VVSMEIIDC--KPEDSGEYKCVATNKHG 136
++ I P D Y+CVA N G
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVG 88
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV----- 112
PN + +V++ +T +LC SG P P + W+K + S S+G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP-----SASNGRIKQLRS 163
Query: 113 -SMEIIDCKPEDSGEYKCVATNKHG 136
+++I + D G+Y+CVATN G
Sbjct: 164 GALQIESSEETDQGKYECVATNSAG 188
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
AP F+ L + + C G P P VKW +G +L+ D M V +E+
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED-DMPVGRNV--LEL 261
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
D K DS Y CVA + G E + V
Sbjct: 262 TDVK--DSANYTCVAMSSLGVIEAVAQITV 289
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWY-KGNRELSKRDYSMSYSDG 110
ET E P F + ++ +C +G P P V W KG + S+R ++ + +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 111 VVSMEIIDC--KPEDSGEYKCVATNKHG 136
++ I P D Y+CVA N G
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVG 88
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
AP+F LR ++ + L+C ++G P P VKWY+ +E+ + G
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
+ I +D+ Y+ ATN+ G+
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGS 85
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 81 LSGKPPPTVKWYKGNRELSKRDY----------SMSYSDGVVSMEIIDCKPEDSGEYKCV 130
SGKP P + W KG + + S+ + +GV + +D+G Y
Sbjct: 126 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV--------ERKDAGFYVVC 177
Query: 131 ATNKHGTDE 139
A N+ G D+
Sbjct: 178 AKNRFGIDQ 186
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
AP+F LR ++ + L+C ++G P P VKWY+ +E+ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
+ I +D+ Y+ ATN+ G+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGS 87
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 81 LSGKPPPTVKWYKGNRELSKRDY----------SMSYSDGVVSMEIIDCKPEDSGEYKCV 130
SGKP P + W KG + + S+ + +GV + +D+G Y
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV--------ERKDAGFYVVC 179
Query: 131 ATNKHGTDE 139
A N+ G D+
Sbjct: 180 AKNRFGIDQ 188
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
AP+F LR ++ + L+C ++G P P VKWY+ +E+ + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
+ I +D+ Y+ ATN+ G+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGS 87
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 81 LSGKPPPTVKWYKGNRELSKRDY----------SMSYSDGVVSMEIIDCKPEDSGEYKCV 130
SGKP P + W KG + + S+ + +GV + +D+G Y
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV--------ERKDAGFYVVC 179
Query: 131 ATNKHGTDE 139
A N+ G D+
Sbjct: 180 AKNRFGIDQ 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEII 117
+V++ +T +LC G P P + W+K D+ + S+G + +++I
Sbjct: 118 KVVEKARTATMLCAAGGNPDPEISWFK--------DFLPVDPATSNGRIKQLRSGALQIE 169
Query: 118 DCKPEDSGEYKCVATNKHGT 137
+ D G+Y+CVATN GT
Sbjct: 170 SSEESDQGKYECVATNSAGT 189
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-MSYSDG 110
ET +S P F + + +C +G+P P + W K +++S + + + + DG
Sbjct: 1 ETGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG 60
Query: 111 VVSMEIIDCKP----EDSGEYKCVATNKHGTDETNCVVIV 146
S ++ +P D Y+C ATN G T+ + V
Sbjct: 61 AGS--VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEII 117
+V++ +T +LC G P P + W+K D+ + S+G + +++I
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFK--------DFLPVDPAASNGRIKQLRSGALQIE 170
Query: 118 DCKPEDSGEYKCVATNKHGT 137
+ D G+Y+CVATN GT
Sbjct: 171 SSEESDQGKYECVATNSAGT 190
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-MSYSDGVVS 113
+S P F + + +C +G+P P + W K +++S + + + + DG S
Sbjct: 5 DSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 114 MEIIDCKP----EDSGEYKCVATNKHGTDETNCVVIV 146
++ +P D Y+C ATN G T+ + V
Sbjct: 65 --VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SM 114
S P F RP + +L C + G+PPP V W KG ++L+ + +DG +
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 115 EIIDCKPEDSGEYKCVATN 133
+ P D+G Y C A N
Sbjct: 72 LLTAALPTDAGVYVCRARN 90
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 76 KLLCCLSGKPPPT-VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
K +C + T V WY G R+L + Y ++Y DGV + + D D G Y+C N
Sbjct: 20 KYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79
Query: 134 KHGTDET 140
+G D +
Sbjct: 80 DYGEDSS 86
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
PN + +V++ +T +LC SG P P + W+K D+ S S+G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSTSNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
++I + D G+Y+CVA+N G
Sbjct: 161 LRSGGLQIESSEETDQGKYECVASNSAG 188
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDG 110
ET ES P F ++ +C +G P P V W K G + S+R ++ + +
Sbjct: 1 ETGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 111 VVSMEIIDC--KPEDSGEYKCVATNKHG 136
++ I P D Y+CVA N HG
Sbjct: 61 AGAVLRIQPLRTPRDENIYECVAQNPHG 88
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SM 114
S P F RP + +L C + G+PPP V W KG ++L+ + +DG +
Sbjct: 13 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 115 EIIDCKPEDSGEYKCVATN 133
+ P D+G Y C A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 62 FLLRPRVMQVRQT--CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSD-GVVSMEII 117
F+ P M + + C++ +SG P P V WY R + D + M S+ G+ S+
Sbjct: 8 FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 118 DCKPEDSGEYKCVATNKHG 136
+ D+G Y CVA N+ G
Sbjct: 68 VVRASDAGAYACVAKNRAG 86
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
+E+ P+ + +V+ V C +G+P P V W G R++ ++ + + +D
Sbjct: 10 IEALPSDISIDEGKVLTVA------CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 63
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
+ ++ I+D + +D G Y N+ G+D
Sbjct: 64 LTTLIIMDVQKQDGGLYTLSLGNEFGSD 91
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
+E+ P+ + +V+ V C +G+P P V W G R++ ++ + + +D
Sbjct: 8 IEALPSDISIDEGKVLTVA------CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
+ ++ I+D + +D G Y N+ G+D
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSD 89
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
+T K C SG P PT++W K +E Y + Y+ + M+ + P D G Y
Sbjct: 33 KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 90
Query: 129 CVATNKHGT 137
C+ N++G+
Sbjct: 91 CIVENEYGS 99
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
+T K C SG P PT++W K +E Y + Y+ + M+ + P D G Y
Sbjct: 32 KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 89
Query: 129 CVATNKHGT 137
C+ N++G+
Sbjct: 90 CIVENEYGS 98
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
+T K C SG P PT++W K +E Y + Y+ + M+ + P D G Y
Sbjct: 32 KTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 89
Query: 129 CVATNKHGT 137
C+ N++G+
Sbjct: 90 CIVENEYGS 98
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE--DSGEYK 128
+ Q+ L C G P PT+ W K + + D YS E+I K + D EY
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYI 86
Query: 129 CVATNKHG 136
C+A NK G
Sbjct: 87 CIAENKAG 94
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
Q+ L+C G P PT+ W K + D +SD + I + D EY C
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
Query: 130 VATNKHG 136
+A NK G
Sbjct: 272 IAENKAG 278
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 69 MQVRQTCKLLCCLSGKPPP-TVKWYKGNRE-LSKRDYSMSY---SDGVVSMEIIDCKPED 123
+ V ++ LC ++G + W+ N E LS +S D ++ I + +D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 124 SGEYKCVATNKHGT 137
+G YKCV T + GT
Sbjct: 74 AGIYKCVVTAEDGT 87
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKC 129
T LLC G P P +WYK E + R ++ +D V VS +I D EDSG+Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Query: 130 VATNKHGTDETNCVVIV 146
V N G + V+ V
Sbjct: 324 VVNNSVGGESVETVLTV 340
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
L C G P P + W ++++ D Y D V + I D G YKC+
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 131 ATNKHGTDE 139
A +K G E
Sbjct: 509 AKSKVGVAE 517
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 123
+ + + +T + C ++G P ++ W + NR L + +G + +E ++ + D
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE-RNSD 591
Query: 124 SGEYKCVATNKHG 136
Y CVA N+ G
Sbjct: 592 QATYTCVAKNQEG 604
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKL------LCCLSGKPPPTVKWYKGNRELSKRDYSM 105
E+VE+ T L ++ QT C +G P TV W K + ++
Sbjct: 332 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-------AI 384
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
+S+ V+ +E + K ED G Y+C N + E +
Sbjct: 385 GHSESVLRIESV--KKEDKGMYQCFVRNDRESAEASA 419
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKC 129
T + +C G PPP + W + L +K + ++ + DG ++E+ + +D+G Y C
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLC 458
Query: 130 VATNKHGTD 138
+A N G D
Sbjct: 459 IAANAGGND 467
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVV 112
+ S P L+ + K +G+P PT W K + +++ Y +S G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+EI DSG Y C N G+ ++C + +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 78
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 79 DKGNYTCVVENEYGS 93
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 62 FLLRPRVMQV--RQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIID 118
L +PR M V ++ + C G+P PTV W + + LS + ++ + + EI
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ D G Y V N G E + +
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 78
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 79 DKGNYTCVVENEYGS 93
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 62 FLLRPRVMQV--RQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIID 118
L +PR M V ++ + C G+P PTV W + + LS + ++ + + EI
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ D G Y V N G E + +
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 18 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 77
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 78 DKGNYTCVVENEYGS 92
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII-DCKPEDSGE 126
V + C +L C + V+WYK +E+ + D+ + ++G ++ +P D GE
Sbjct: 16 VHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGE 75
Query: 127 YKCVATNK 134
++CVA ++
Sbjct: 76 FQCVAGDE 83
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 87 DKGNYTCVVENEYGS 101
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 17 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 76
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 77 DKGNYTCVVENEYGS 91
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPE 122
R + T K C G P PT++W K +E + Y + S+ + P
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 78
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 79 DKGNYTCVVENEYGS 93
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 130
T K C G P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83
Query: 131 ATNKHGT 137
N++G+
Sbjct: 84 VENEYGS 90
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 130
T K C G P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 131 ATNKHGT 137
N++G+
Sbjct: 95 VENEYGS 101
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 130
T K C G P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 88
Query: 131 ATNKHGT 137
N++G+
Sbjct: 89 VENEYGS 95
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 130
T K C G P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 87
Query: 131 ATNKHGT 137
N++G+
Sbjct: 88 VENEYGS 94
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDS 124
+++ + LLC P P+ +WYK E + R ++ +D V VS +I D EDS
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 285
Query: 125 GEYKCVATNKHGTDETNCVVIV 146
G+Y CV N G + V+ V
Sbjct: 286 GKYLCVVNNSVGGESVETVLTV 307
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKL------LCCLSGKPPPTVKWYKGNRELSKRDYSM 105
E+VE+ T L ++ QT C +G P TV W K + ++
Sbjct: 299 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-------AI 351
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
+S+ V+ +E + K ED G Y+C N + E +
Sbjct: 352 GHSESVLRIESV--KKEDKGMYQCFVRNDRESAEASA 386
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 62 FLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMS-YSD--GVVSMEI 116
F+ +P+ +V + + KL C +S PPP + W + N + +S Y D G V++ I
Sbjct: 18 FIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLI 77
Query: 117 IDCKPEDSGEYKCVATNKHGTDETN 141
D +D+G Y A N+ G N
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCN 102
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 43 EPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD 102
EP +W T + R + T K C G P PT +W K +E +
Sbjct: 3 EPEGAPYWTNTEKXEK------RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEH 56
Query: 103 YSMSYSDGVVSMEII--DCKPEDSGEYKCVATNKHGT 137
Y +I P D G Y CV N++G+
Sbjct: 57 RIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGS 93
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII--DCKPE 122
R + T K C G P PT +W K +E + Y +I P
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 85
Query: 123 DSGEYKCVATNKHGT 137
D G Y CV N++G+
Sbjct: 86 DKGNYTCVVENEYGS 100
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
T + C +G P P++ W K RE R + S+ + P D G Y CV
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 90
Query: 131 ATNKHGT 137
NK G+
Sbjct: 91 VENKFGS 97
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 62 FLLRPRVMQVRQT--CKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEII 117
FL P + V++ C++ C +SG P P + W + + + +GV S+ I
Sbjct: 12 FLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIE 71
Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
D+G Y C+ATN+ G + + ++V
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVV 100
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
T + C +G P P++ W K RE R + S+ + P D G Y CV
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
Query: 131 ATNKHGT 137
NK G+
Sbjct: 199 VENKFGS 205
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 79 CCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
C SG P P + W++ + + + + Y + S+ + + + D G Y C ATNK G
Sbjct: 216 CRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 273
Query: 138 DE 139
DE
Sbjct: 274 DE 275
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 76 KLLCCLSGKPPPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVAT 132
K C + P ++ WY +G + +S + + +GV S + I + ED+G Y+C AT
Sbjct: 22 KFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQAT 80
Query: 133 NKHGTDETNCVVI 145
+ G + VV+
Sbjct: 81 DAKGQTQEATVVL 93
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS 99
F ++ P+ + + +++C +S P P V W N E++
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
+ + V T L C +G P P + W K RD + + +++I + + D+G
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-QGTLQIKNLRISDTGT 76
Query: 127 YKCVATNKHGTDETNCVVIV 146
Y CVAT+ G + V+ V
Sbjct: 77 YTCVATSSSGETSWSAVLDV 96
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 79 CCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
C SG P P + W++ + + + + Y + S+ + + + D G Y C ATNK G
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 177
Query: 138 DETNCVVIV 146
DE + V
Sbjct: 178 DEKQAFLQV 186
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS 99
F ++ P+ + + +++C +S P P V W N E++
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 44
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 53 TVESAPNFTFLLRPR---VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD 109
TV SAP + +P V++ Q + C ++G P P V W + LS +++ S
Sbjct: 304 TVVSAPKYE--QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS- 360
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHG 136
+ I K D G Y C ATN+HG
Sbjct: 361 ---GLVIKGVKNGDKGYYGCRATNEHG 384
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 79 CCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
C SG P P + W++ + + + + Y + S+ + + + D G Y C ATNK G
Sbjct: 26 CRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 83
Query: 138 DETNCVVIV 146
DE + V
Sbjct: 84 DEKQAFLQV 92
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 63 LLRPRVMQVRQT-------CKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMS 106
++P ++Q++ L+C G+P P + W + G++ L R +
Sbjct: 93 FVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVK 151
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
G S+ I D K DSG Y C A ++ G
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
G P PT+ W K L +D ++ G + I + D+G+Y CV TN G E+
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESEV 195
Query: 143 V 143
Sbjct: 196 A 196
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSY-----SDGVVSMEIIDCKPE--DS 124
+ L C G+P PT++WYKG + + +D S+ S + + I+ + D
Sbjct: 25 EPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 125 GEYKCVATNKHG 136
G Y CVA N G
Sbjct: 85 GVYVCVARNYLG 96
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYS-DGVV 112
+AP F L+ + C ++G P P + W+K +++S + Y++ DG
Sbjct: 6 TAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 65
Query: 113 SMEIIDCKPEDSGEYKCVATNKHG 136
S+ +D G Y +A N G
Sbjct: 66 SLHTTASTLDDDGNYTIMAANPQG 89
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
+ + V T L C +G P PT+ W K +S +D + + V ++I K D+G
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQIRYAKLGDTGR 76
Query: 127 YKCVATNKHG 136
Y C+A+ G
Sbjct: 77 YTCIASTPSG 86
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSME 115
P F L + ++ Q + + G+P P V W + + + +R ++ G+ +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 116 IIDCKPEDSGEYKCVATNKHGT 137
I+ + D+G Y C A N++G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGA 87
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 62 FLLRPRVMQVRQTCKLLC-----CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
F+ P+++ + + L+C K ++WYK + L K + G + +
Sbjct: 125 FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV 184
Query: 117 IDCKPEDSGEYKCVATNKHGTDETN 141
D ED+G Y+CV T H + N
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYN 209
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYS-DGV 111
AP F L+ + C ++G P P + W+K +++S + Y++ DG
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHG 136
S+ +D G Y +A N G
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQG 90
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 65 RPRVMQVRQ-------TCKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMSYS 108
+P ++Q++ L+C G+P P + W + G++ L R +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVKGQ 59
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHG 136
G S+ I D K DSG Y C A ++ G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIG 87
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYS--MSYSDG-VVSMEIIDCKPEDSGEYKCVATN 133
+ C + PP ++ W + L ++ + +YS G + +EI D G Y C ATN
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 134 KHGT 137
GT
Sbjct: 180 HIGT 183
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 65 RPRVMQVRQ-------TCKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMSYS 108
+P ++Q++ L+C G+P P + W + G++ L R +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR-IEVKGQ 59
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHG 136
G S+ I D K DSG Y C A ++ G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIG 87
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYS--MSYSDG-VVSMEIIDCKPEDSGEYKCVA 131
+ C + PP ++ W + L ++ + +YS G + +EI D G Y C A
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 132 TNKHGT 137
TN GT
Sbjct: 178 TNHIGT 183
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 57 APNFTFLLRPRVMQVRQTCKLL--CCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
P+F L +V C +L C ++ K + WYK RE+S D + DG+ +
Sbjct: 117 GPHFVEYLS---WEVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICT 172
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ I + +D+G Y+ + + G D++ ++
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 48 TFWQETVESAPN----FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RD 102
F +E E P+ FT + + + C + G P P V W+K + + + R
Sbjct: 28 AFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 103 YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
+ + Y +G S+ I + +D +Y C A N G E C
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTA 128
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 48 TFWQETVESAPN----FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RD 102
F +E E P+ FT + + + C + G P P V W+K + + + R
Sbjct: 28 AFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 103 YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
+ + Y +G S+ I + +D +Y C A N G E C
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG--EATCTA 128
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 70 QVRQTCKLL--CCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
+V C +L C ++ K + WYK RE+S D + DG+ ++ I + +D+G
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGI 290
Query: 127 YKCVATNKHGTDETNCVVI 145
Y+ + + G D++ ++
Sbjct: 291 YEVILKDDRGKDKSRLKLV 309
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 76 KLLCCLSGKPPPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVAT 132
K C + P ++ WY +G + +S + + +GV S + I + ED+G Y+C AT
Sbjct: 20 KFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 133 NKHGTDETNCVVI 145
+ G + VV+
Sbjct: 79 DAKGQTQEATVVL 91
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS 99
F ++ P+ + + +++C +S P P V W N E++
Sbjct: 99 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 76 KLLCCLSGKPPPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVAT 132
K C + P ++ WY +G + +S + + +GV S + I + ED+G Y+C AT
Sbjct: 18 KFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQAT 76
Query: 133 NKHGTDETNCVVI 145
+ G + VV+
Sbjct: 77 DAKGQTQEATVVL 89
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSM 114
S FT LR T L C LS P V+W KG L D YS+ V +
Sbjct: 6 SGARFTEGLRNEEAMEGATATLQCELSKAAP--VEWRKGLEALRDGDKYSLRQDGAVCEL 63
Query: 115 EIIDCKPEDSGEYKCV 130
+I D+G Y CV
Sbjct: 64 QIHGLAMADNGVYSCV 79
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
L C LS P VKW GN L D YS+ ++ + + + +P+DSG Y C
Sbjct: 28 LRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSC 80
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSY-----SDGVVSMEIIDCKP 121
++ + L C G+P PT++WYKG + + +D S+ S + + I+ +
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 122 E--DSGEYKCVATNKHG 136
D G Y CVA N G
Sbjct: 80 SRPDEGVYVCVARNYLG 96
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEII 117
+F LR + T L C LS P V+W KG L D +S+ V ++I
Sbjct: 10 HFIGRLRHQESIEGATATLRCELSKAAP--VEWRKGRESLRDGDRHSLRQDGAVCELQIC 67
Query: 118 DCKPEDSGEYKCV 130
D+GEY CV
Sbjct: 68 GLAVADAGEYSCV 80
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
Q L C G P P ++W K L + S ++I + + ED G Y+C A
Sbjct: 129 QNVTLECFALGNPVPDIRWRK---VLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 133 NKHGTDETNCVVIV 146
N G D+ + V
Sbjct: 186 NIRGKDKHQARIYV 199
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
GKP P +WYK ++ + D Y D V + I D EDS A N G +
Sbjct: 31 GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS 90
Query: 141 NCVVIV 146
+ ++V
Sbjct: 91 HAFLLV 96
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR----ELSKRD--YSMSY 107
V++AP+ T R Q + C G P P W K E+S + +
Sbjct: 89 VKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN 148
Query: 108 SDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVVIV 146
+ + I++ + ED GEY+C ATN G+ + V+ V
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
L C LS P VKW GN L D YS+ + + + + +P+DSG Y C
Sbjct: 28 LRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDSGRYSC 80
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 64 LRPRVMQVRQTCKLLCCLS--------GKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSM 114
L+P+++ + K+ + G P PT W G+ + + + S+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
K DSG YK N+ G DE VIV
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE---DSGE 126
QV TC++ P T+ W++ + L +YS S ++ P+ D G
Sbjct: 35 QVNITCEVFAY----PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 127 YKCVATNKHGTDETNCVVI 145
Y C A N+ G + +++
Sbjct: 91 YNCTAVNRIGQESLEFILV 109
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
T L C + +P P + W K D + + + P+D G Y CVAT+
Sbjct: 20 TVTLTCEVPAQPSPQIHWMK--------DGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 71
Query: 134 -KHGTDETNCVVI 145
HG E+ V I
Sbjct: 72 SSHGPQESRAVSI 84
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
T L C + +P P + W K D + + + P+D G Y CVAT+
Sbjct: 27 TVTLTCEVPAQPSPQIHWMK--------DGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 78
Query: 134 -KHGTDETNCVVI 145
HG E+ V I
Sbjct: 79 SSHGPQESRAVSI 91
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
+ +V + L+ GKP P V W KG L + SD + DSGEY
Sbjct: 35 IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEY 94
Query: 128 KC 129
+
Sbjct: 95 EL 96
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 62 FLLRPRVMQVRQTCKL-----LCCLSGKPPPTVKWYKG---------NRELSKRD-YSMS 106
F++RP+ +V + + S PP VKW+KG + L D Y +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + I D +P +G Y+C + K D +N + V
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 60 FTFLLRPRVMQVRQ-TCKLLCCLS----GKPPPTVKWYKGNREL--SKRDYSMSYSDGVV 112
T PRV+ + + +L C+ G PPPT+ W + L SK + Y +G +
Sbjct: 3 LTVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 113 SME-IIDCKPE--DSGEYKCVATNKHGT 137
S ++ KP ++G Y +A N GT
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGT 90
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
L CLS ++W ++ L + M+ S + I K ED+GEY+C +N
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 138 DETNCV 143
+N +
Sbjct: 189 RRSNSI 194
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
L CLS ++W ++ L + M+ S + I K ED+GEY+C +N
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 138 DETNCV 143
+N +
Sbjct: 189 RRSNSI 194
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
G PPP +KWYK L + + + G V + I++ D+G Y + TN
Sbjct: 226 GYPPPEIKWYKNGIPL---ESNHTIKAGHV-LTIMEVSERDTGNYTVILTN 272
>pdb|2FRG|P Chain P, Structure Of The Immunoglobulin-Like Domain Of Human Tlt-1
Length = 106
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 99 SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
+R + G++ +E++ + ED+GEY C+ G
Sbjct: 55 GRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARG 92
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
V AP TFL P C + + G P P ++W+ L++ Y +
Sbjct: 1 VHFAPTITFLESPT--SDHHWC-IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 114 MEIIDCKPEDS------GEYKCVATNKHGTDE 139
E C D+ G+Y +A N++G DE
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89
>pdb|2AVG|A Chain A, Nmr Structure Of Cc1 Domain From Human Cardiac Myosin
Binding Protein C
Length = 120
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 62 FLLRPRVMQVRQTCKL-----LCCLSGKPPPTVKWYKG---------NRELSKRD-YSMS 106
F++RP+ +V + + S PP VKW+KG + L D Y +
Sbjct: 17 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 76
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
+ + I D +P +G Y+C + K D +N
Sbjct: 77 SKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN 111
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 83 GKPPPTVKWYK----------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
G PP W+K R S Y ++ + G + + + D+GEY C A
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS--DTGEYSCEAR 191
Query: 133 NKHGTDETNCVV 144
N +GT T+ V
Sbjct: 192 NGYGTPMTSNAV 203
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEI 116
FT L+ + T L C LS P V+W KG L RD YS+ ++I
Sbjct: 11 FTQDLKTKEASEGATATLQCELSKVAP--VEWKKGPETL--RDGGRYSLKQDGTRCELQI 66
Query: 117 IDCKPEDSGEYKCV 130
D D+GEY C+
Sbjct: 67 HDLSVADAGEYSCM 80
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 61 TFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC 119
+FL+ P ++Q+R C+L ++ W + +L++ + + + V E+ D
Sbjct: 12 SFLVHPGDLLQLR--CRLR-----DDVQSINWLRDGVQLAESNRTRITGEEV---EVQDS 61
Query: 120 KPEDSGEYKCVATNKHGTDET 140
P DSG Y CV ++ G+D T
Sbjct: 62 VPADSGLYACVTSSPSGSDTT 82
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
T L C LS P V+W KG+ L D YS+ ++I D+GEY CV
Sbjct: 25 TAVLQCELSKAAP--VEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSCV 80
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 69 MQVRQTCKLLCCLSGKPPP-TVKWYKGNRE-LSKRDYSMSY---SDGVVSMEIIDCKPED 123
+ V ++ LC ++G + W+ N E LS +S D ++ I + +D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 124 SGEYKCVATNKHGT 137
+G YKCV T + GT
Sbjct: 74 AGIYKCVVTAEDGT 87
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 69 MQVRQTCKLLCCLSGKPPP-TVKWYKGNRE-LSKRDYSMSY---SDGVVSMEIIDCKPED 123
+ V ++ LC ++G + W+ N E LS +S D ++ I + +D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 124 SGEYKCVATNKHGT 137
+G YKCV T + GT
Sbjct: 74 AGIYKCVVTAEDGT 87
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
++ W + +L + + + + V E+ D P DSG Y CV ++ G+D T
Sbjct: 39 SINWLRDGVQLVESNRTRITGEEV---EVRDSIPADSGLYACVTSSPSGSDTT 88
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
AP TFL P C + + G P P ++W+ L++ Y + E
Sbjct: 4 APTITFLESPT--SDHHWC-IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 117 IDCKPEDS------GEYKCVATNKHGTDE 139
C D+ G+Y +A N++G DE
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
T L C L+ P V+W KG+ L D YS+ ++I D+GEY CV
Sbjct: 25 TAVLQCELNSAAP--VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSCVC- 81
Query: 133 NKHGTDETNCVVIV 146
G + T+ ++ V
Sbjct: 82 ---GQERTSAMLTV 92
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ KW+ N LS+ S S+ I++ K EDSGEYKC
Sbjct: 36 STKWFH-NGSLSEETNS--------SLNIVNAKFEDSGEYKC 68
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ KW+ N LS+ S S+ I++ K EDSGEYKC
Sbjct: 39 STKWFH-NGSLSEETNS--------SLNIVNAKFEDSGEYKC 71
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ KW+ N LS+ S S+ I++ K EDSGEYKC
Sbjct: 36 STKWFH-NGSLSEETNS--------SLNIVNAKFEDSGEYKC 68
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ KW+ N LS+ S S+ I++ K EDSGEYKC
Sbjct: 36 STKWFH-NGSLSEETNS--------SLNIVNAKFEDSGEYKC 68
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ KW+ N LS+ S S+ I++ K EDSGEYKC
Sbjct: 36 STKWFH-NGSLSEETNS--------SLNIVNAKFEDSGEYKC 68
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 66 PRVMQVRQT-------CKLLCCLSGKPPPTVKWY---------KGNRELSKRDYSMSYSD 109
PRV V+ + +L C S PP W K S+ + +S S
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 110 GVVSMEIIDCKPE-DSGEYKCVATNKHGTDE 139
G + I + E D G+Y+C T+ G+D+
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 78 LCCLSGKPPPTVKWYKGNREL-SKRDYSMSYS---DGVVSMEIIDCKPEDSGEYKCVATN 133
L C +G +V W N L + Y + S DG ++ + +D+G+Y C+ TN
Sbjct: 332 LKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG--TLNFTNVTVQDTGQYTCMVTN 389
Query: 134 KHG 136
G
Sbjct: 390 SAG 392
>pdb|1U3H|A Chain A, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|E Chain E, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
Length = 110
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGT 137
+S+ I D +P DS Y C A+ GT
Sbjct: 71 LSLHIADSQPGDSATYFCAASANSGT 96
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 76 KLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
+L+ LSG P V+WYK G R S+ + + + + + D+GEY C A
Sbjct: 15 ELVVHLSGPGGP-VRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 63 LLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNR---------ELSKRD------YSM 105
L +P + V QT ++ C P WY+ E SKR +S
Sbjct: 4 LTQPPSVSVSPGQTARITCSGDALPEKYAYWYQQKSGQAPVLIIYEDSKRPSGIPERFSG 63
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
S S + ++ I + +D +Y C +TN GT
Sbjct: 64 SRSGTMATLTISGAQVDDEADYYCYSTNSGGT 95
>pdb|3FKU|X Chain X, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Y Chain Y, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Z Chain Z, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|S Chain S, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|T Chain T, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|U Chain U, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
Length = 280
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 83 GKPPPTVKWYKGNR--ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
G PP + + +R +S+R +S S S S+ I +PED +Y C
Sbjct: 181 GHPPKLLSYRNNDRPSGISER-FSASRSGNTASLTITGLQPEDEADYYC 228
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 83 GKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
G+ P + + K NR D +S S S S+ I + ED EY C + +K G+
Sbjct: 40 GQAPILLFYGKNNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGS 95
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 88 TVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
T KWYK E+ SKR ++S+ + I D +PED G+Y V
Sbjct: 38 TGKWYKNGVEVRPSKR-ITISHVGRFHKLVIDDVRPEDEGDYTFV 81
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
+S S S S+ I +PED G+Y C A
Sbjct: 63 FSASKSGTSASLAISGLRPEDEGDYYCAA 91
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic Antibody
E5.2 Fv Fragment Complex
Length = 108
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With Mouse
Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 90 KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
+Y G++ L R+ S Y +I+ + EDSG Y C A + G
Sbjct: 208 SFYMGSKTLRGRNTSSEY-------QILTARREDSGLYWCEAATEDG 247
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 81 LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
L K + WYK N+EL YS ++ I + + EDSG Y C
Sbjct: 153 LYAKHYNNITWYKNNQELIID--GTKYSQSGQNLIIHNPELEDSGRYDC 199
>pdb|1QRN|D Chain D, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 200
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
SGK P + + G++E + ++ + VS+ I D +P DS Y C T
Sbjct: 39 SGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT 91
>pdb|1QSE|D Chain D, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1QSF|D Chain D, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
pdb|2GJ6|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|3D39|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3H9S|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3PWP|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QFJ|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
Length = 200
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
SGK P + + G++E + ++ + VS+ I D +P DS Y C T
Sbjct: 39 SGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT 91
>pdb|1AO7|D Chain D, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
Length = 204
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
SGK P + + G++E + ++ + VS+ I D +P DS Y C T
Sbjct: 39 SGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT 91
>pdb|3QH3|A Chain A, The Crystal Structure Of Tcr A6
pdb|3QH3|C Chain C, The Crystal Structure Of Tcr A6
Length = 194
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
SGK P + + G++E + ++ + VS+ I D +P DS Y C T
Sbjct: 39 SGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT 91
>pdb|4BJL|A Chain A, Locw, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Distilled Water
pdb|4BJL|B Chain B, Locw, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Distilled Water
pdb|3BJL|A Chain A, Loc, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Ammonium Sulfate
pdb|3BJL|B Chain B, Loc, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Ammonium Sulfate
pdb|1BJM|A Chain A, Loc Naks, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Nakso4
pdb|1BJM|B Chain B, Loc Naks, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Nakso4
Length = 216
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 81 LSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
LSG P + + +R D +S S S S+ I +PED +Y C A
Sbjct: 40 LSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA 91
>pdb|2QQQ|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
pdb|2QQQ|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
pdb|2QQQ|C Chain C, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
pdb|2QQQ|D Chain D, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Length = 111
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 85 PPPTVKWYKGN------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
P V++Y N +SM+ +D + II + +D GEY C
Sbjct: 43 PQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAREDDGGEYFC 93
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
S+ I D EDSG Y+C +++G+ + C +
Sbjct: 67 SLRINDLTVEDSGTYRCKPESRYGSYDAECAAL 99
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 113 SMEIIDCKPEDSGEYKCVA 131
S+ I D + EDSG YKC A
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
>pdb|2QTE|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment Mutant N30d
pdb|2QTE|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment Mutant N30d
pdb|2QTE|C Chain C, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment Mutant N30d
pdb|2QTE|D Chain D, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment Mutant N30d
Length = 111
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 85 PPPTVKWYKGN------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
P V++Y N +SM+ +D + II + +D GEY C
Sbjct: 43 PQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAREDDGGEYFC 93
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 113 SMEIIDCKPEDSGEYKCVA 131
S+ I D + EDSG YKC A
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +PED G Y C
Sbjct: 75 INSLQPEDFGSYYC 88
>pdb|2QJD|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment Mutant N30d
pdb|2QJD|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment Mutant N30d
Length = 110
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+SM+ +D + II + +D GEY C
Sbjct: 66 FSMTVNDQKFDLNIIGTREDDGGEYFC 92
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 113 SMEIIDCKPEDSGEYKCVA 131
S+ I D + EDSG YKC A
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 66 PRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSME------I 116
P + + L C G PP W+K + D + ++ + +++ I
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172
Query: 117 ID-CKPEDSGEYKCVATNKHGT 137
D DSGEY C A N +GT
Sbjct: 173 FDPVTAFDSGEYYCQAQNGYGT 194
>pdb|2XWC|A Chain A, Crystal Structure Of The Dna Binding Domain Of Human
Tp73 Refined At 1.8 A Resolution
pdb|4A63|A Chain A, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|C Chain C, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|E Chain E, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|G Chain G, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|I Chain I, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|K Chain K, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 208
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 45 LQITFWQETVESAPNFTF--LLRPRVMQVRQTCKLLCCLSGKPPP 87
++TF Q + + +T+ LL+ Q+ +TC + +S PPP
Sbjct: 17 FEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPP 61
>pdb|3QEU|A Chain A, The Crystal Structure Of Tcr Dmf5
pdb|3QEU|D Chain D, The Crystal Structure Of Tcr Dmf5
Length = 202
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
SGK P + + G++E + ++ + VS+ I D +P DS Y C G
Sbjct: 40 SGKSPELIMFIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVNFGGG 96
>pdb|3QDG|D Chain D, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|D Chain D, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 199
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
SGK P + + G++E + ++ + VS+ I D +P DS Y C G
Sbjct: 39 SGKSPELIMFIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVNFGGG 95
>pdb|3VD0|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD0|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD1|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|3VD2|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates
P73 Transactivation
pdb|4G82|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer
Bound To A Full Response-element
pdb|4G82|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer
Bound To A Full Response-element
pdb|4G83|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer
Bound To A Full Response-element
pdb|4G83|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer
Bound To A Full Response-element
Length = 210
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 45 LQITFWQETVESAPNFTF--LLRPRVMQVRQTCKLLCCLSGKPPP 87
++TF Q + + +T+ LL+ Q+ +TC + +S PPP
Sbjct: 25 FEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPP 69
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 113 SMEIIDCKPEDSGEYKCVA 131
S+ I D + EDSG YKC A
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
>pdb|3BDB|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
pdb|3BDB|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
pdb|3BDB|C Chain C, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
pdb|3BDB|D Chain D, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
pdb|3BDB|E Chain E, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
pdb|3BDB|F Chain F, Crystal Structure Of Novel Immune-Type Receptor 11
Extracellular Fragment From Ictalurus Punctatus
Including Stalk Region
Length = 137
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+SM+ +D + II + +D GEY C
Sbjct: 67 FSMTVNDQKFDLNIIGAREDDGGEYFC 93
>pdb|2QHL|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|C Chain C, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|D Chain D, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|E Chain E, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
Length = 111
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+SM+ +D + II + +D GEY C
Sbjct: 67 FSMTVNDQKFDLNIIGTREDDGGEYFC 93
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 63 LLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNR---------ELSKRD------YSM 105
L +P + V QT ++ C P WY+ E SKR +S
Sbjct: 5 LTQPPSVSVSPGQTARITCSGDALPKNYAYWYQQKSGQAPVLVIYEDSKRPSGIPERFSG 64
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
S S + ++ I + ED +Y C +T+ G
Sbjct: 65 SSSGTMATLTISGAQVEDEADYYCYSTDSSG 95
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +P+D G Y C
Sbjct: 75 INSLQPDDFGSYYC 88
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
+ + Q KL C +G P +W+K N+E+ + S + V +D+G
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAV--------HVKDAGF 79
Query: 127 YKCVATNK 134
Y C N
Sbjct: 80 YVCRVNNN 87
>pdb|3HG1|D Chain D, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 194
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 82 SGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
SGK P + + G++E + ++ + VS+ I D +P DS Y C A N G
Sbjct: 39 SGKSPELIMFIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLC-AVNVAG 94
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +P+D G Y C
Sbjct: 75 INSLQPDDFGSYYC 88
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGV------------VSME 115
V +T + C SG + WY+ + S + Y+ + +DGV S++
Sbjct: 15 VGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLK 74
Query: 116 IIDCKPEDSGEYKC 129
I +P+D G Y C
Sbjct: 75 INSLQPDDFGSYYC 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,818,393
Number of Sequences: 62578
Number of extensions: 187565
Number of successful extensions: 963
Number of sequences better than 100.0: 189
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 273
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)