Query psy12421
Match_columns 168
No_of_seqs 159 out of 2330
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:54:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 2.9E-20 6.2E-25 114.4 13.6 96 58-153 1-97 (98)
2 cd05851 Ig3_Contactin-1 Third 99.8 1.1E-18 2.5E-23 105.3 12.1 88 57-147 1-88 (88)
3 cd05747 Ig5_Titin_like M5, fif 99.8 9.9E-18 2.2E-22 102.1 12.7 89 56-144 2-91 (92)
4 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 4.6E-17 1E-21 97.8 12.8 81 66-146 4-86 (86)
5 cd05745 Ig3_Peroxidasin Third 99.8 1.3E-17 2.9E-22 97.4 9.6 74 71-146 1-74 (74)
6 PF07679 I-set: Immunoglobulin 99.8 5.7E-17 1.2E-21 98.2 12.6 89 58-146 1-90 (90)
7 cd05730 Ig3_NCAM-1_like Third 99.7 7.1E-17 1.5E-21 98.9 12.2 83 66-148 12-94 (95)
8 cd05737 Ig_Myomesin_like_C C-t 99.7 9E-17 2E-21 97.8 12.5 81 66-146 10-92 (92)
9 cd05869 Ig5_NCAM-1 Fifth immun 99.7 1.6E-16 3.4E-21 97.7 13.0 90 57-146 2-97 (97)
10 cd04975 Ig4_SCFR_like Fourth i 99.7 1.6E-16 3.5E-21 98.0 12.9 83 65-147 11-100 (101)
11 cd04968 Ig3_Contactin_like Thi 99.7 1.8E-16 3.9E-21 95.7 12.9 87 57-146 1-87 (88)
12 cd05852 Ig5_Contactin-1 Fifth 99.7 4.5E-17 9.7E-22 94.8 9.8 73 72-146 1-73 (73)
13 cd05735 Ig8_DSCAM Eight immuno 99.7 9.3E-17 2E-21 96.9 11.3 82 72-153 1-88 (88)
14 cd05728 Ig4_Contactin-2-like F 99.7 8.9E-17 1.9E-21 96.4 10.9 84 60-146 2-85 (85)
15 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.7E-16 3.6E-21 97.7 12.1 89 57-146 2-98 (98)
16 cd05892 Ig_Myotilin_C C-termin 99.7 1.6E-16 3.4E-21 92.8 10.4 72 75-146 1-75 (75)
17 cd05732 Ig5_NCAM-1_like Fifth 99.7 3.7E-16 7.9E-21 95.8 12.1 89 57-146 2-96 (96)
18 cd05723 Ig4_Neogenin Fourth im 99.7 2.5E-16 5.3E-21 91.3 10.6 71 74-146 1-71 (71)
19 cd04972 Ig_TrkABC_d4 Fourth do 99.7 5.8E-16 1.3E-20 93.9 12.6 84 63-146 6-90 (90)
20 cd05748 Ig_Titin_like Immunogl 99.7 4.8E-16 1E-20 90.8 11.4 73 74-146 1-74 (74)
21 cd05859 Ig4_PDGFR-alpha Fourth 99.7 6.2E-16 1.3E-20 95.5 12.3 82 66-147 12-100 (101)
22 cd05867 Ig4_L1-CAM_like Fourth 99.7 2.6E-16 5.7E-21 92.4 9.9 73 72-146 1-75 (76)
23 cd05893 Ig_Palladin_C C-termin 99.7 1.8E-16 4E-21 92.6 9.0 72 75-146 1-75 (75)
24 cd04969 Ig5_Contactin_like Fif 99.7 4.5E-16 9.7E-21 90.7 10.2 73 72-146 1-73 (73)
25 cd05865 Ig1_NCAM-1 First immun 99.7 1.1E-15 2.3E-20 93.6 11.9 85 62-146 5-95 (96)
26 cd05868 Ig4_NrCAM Fourth immun 99.7 3.9E-16 8.4E-21 91.6 9.5 73 72-146 1-75 (76)
27 cd07693 Ig1_Robo First immunog 99.7 1.3E-15 2.8E-20 93.8 12.3 90 57-146 1-99 (100)
28 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.1E-15 2.4E-20 92.7 11.6 81 63-146 9-90 (91)
29 cd05863 Ig2_VEGFR-3 Second imm 99.7 5.6E-16 1.2E-20 88.3 9.6 66 75-147 1-66 (67)
30 cd05744 Ig_Myotilin_C_like Imm 99.7 9.3E-16 2E-20 89.8 10.7 72 75-146 1-75 (75)
31 cd05773 Ig8_hNephrin_like Eigh 99.7 1.8E-15 3.9E-20 94.8 12.6 96 56-151 3-109 (109)
32 cd05876 Ig3_L1-CAM Third immun 99.7 5.3E-16 1.1E-20 89.9 9.4 70 75-146 1-70 (71)
33 cd05857 Ig2_FGFR Second immuno 99.7 1.8E-15 3.8E-20 90.7 11.4 80 67-146 4-85 (85)
34 KOG3513|consensus 99.7 5.2E-16 1.1E-20 125.5 11.5 130 16-152 295-426 (1051)
35 cd05891 Ig_M-protein_C C-termi 99.7 3E-15 6.5E-20 91.0 12.3 81 66-146 10-92 (92)
36 cd05854 Ig6_Contactin-2 Sixth 99.7 2.6E-15 5.6E-20 89.9 11.8 78 73-150 1-85 (85)
37 cd04978 Ig4_L1-NrCAM_like Four 99.7 1E-15 2.2E-20 89.8 9.7 73 72-146 1-75 (76)
38 cd05849 Ig1_Contactin-1 First 99.7 2.3E-15 4.9E-20 91.7 11.1 81 58-140 2-86 (93)
39 cd05848 Ig1_Contactin-5 First 99.7 3.6E-15 7.8E-20 91.0 12.1 81 58-140 2-87 (94)
40 cd05746 Ig4_Peroxidasin Fourth 99.7 9.9E-16 2.1E-20 88.2 8.8 68 75-144 1-68 (69)
41 cd05760 Ig2_PTK7 Second immuno 99.7 1.7E-15 3.7E-20 89.1 9.7 71 75-147 1-75 (77)
42 cd04976 Ig2_VEGFR Second immun 99.7 2.6E-15 5.6E-20 86.9 9.9 70 75-147 1-70 (71)
43 cd05850 Ig1_Contactin-2 First 99.7 1E-14 2.2E-19 89.1 13.0 85 58-144 2-92 (94)
44 cd05866 Ig1_NCAM-2 First immun 99.7 1E-14 2.3E-19 88.4 12.8 85 61-146 4-91 (92)
45 cd05743 Ig_Perlecan_D2_like Im 99.6 5.5E-15 1.2E-19 87.2 10.9 74 72-145 1-75 (78)
46 cd05731 Ig3_L1-CAM_like Third 99.6 2.7E-15 5.8E-20 86.8 9.3 70 75-146 1-70 (71)
47 cd05864 Ig2_VEGFR-2 Second imm 99.6 3E-15 6.5E-20 86.2 9.2 68 75-146 1-68 (70)
48 cd04970 Ig6_Contactin_like Six 99.6 4.8E-15 1E-19 88.9 10.4 78 73-150 1-85 (85)
49 cd05725 Ig3_Robo Third immunog 99.6 2.9E-15 6.4E-20 86.2 9.0 69 75-146 1-69 (69)
50 KOG4194|consensus 99.6 1.1E-15 2.3E-20 117.2 9.0 142 17-167 576-722 (873)
51 cd05726 Ig4_Robo Fhird immunog 99.6 7.7E-15 1.7E-19 88.9 10.1 76 72-150 1-85 (90)
52 cd05853 Ig6_Contactin-4 Sixth 99.6 7.5E-15 1.6E-19 87.5 9.8 76 73-150 1-85 (85)
53 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.5E-14 3.2E-19 83.2 10.5 68 72-144 1-68 (69)
54 cd05764 Ig_2 Subgroup of the i 99.6 1.2E-14 2.5E-19 84.9 10.1 73 72-146 1-74 (74)
55 cd04973 Ig1_FGFR First immunog 99.6 1.4E-14 3E-19 85.6 10.4 78 65-146 2-79 (79)
56 cd05856 Ig2_FGFRL1-like Second 99.6 1.1E-14 2.4E-19 86.5 9.6 79 67-146 4-82 (82)
57 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.3E-14 2.9E-19 84.6 9.7 70 75-146 1-73 (74)
58 cd05722 Ig1_Neogenin First imm 99.6 2.4E-14 5.1E-19 87.6 11.1 84 60-145 2-94 (95)
59 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.8E-14 3.8E-19 84.7 9.7 68 77-144 3-76 (79)
60 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.7E-14 3.7E-19 83.3 9.4 69 75-145 1-69 (72)
61 cd05724 Ig2_Robo Second immuno 99.6 3E-14 6.5E-19 85.5 11.0 80 64-145 3-85 (86)
62 KOG3513|consensus 99.6 1.3E-14 2.9E-19 117.5 11.7 140 11-152 189-334 (1051)
63 cd05763 Ig_1 Subgroup of the i 99.6 1.2E-14 2.6E-19 85.0 8.4 70 75-146 1-74 (75)
64 cd05758 Ig5_KIRREL3-like Fifth 99.6 8.7E-14 1.9E-18 85.6 12.3 87 57-144 2-97 (98)
65 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 6.2E-14 1.4E-18 83.1 10.6 69 77-145 3-79 (81)
66 cd04974 Ig3_FGFR Third immunog 99.6 1.9E-14 4.1E-19 87.1 8.5 76 72-147 1-90 (90)
67 cd05736 Ig2_Follistatin_like S 99.6 5.3E-14 1.2E-18 82.5 10.0 73 75-147 1-74 (76)
68 cd05749 Ig2_Tyro3_like Second 99.6 5E-14 1.1E-18 83.4 9.8 73 61-140 2-75 (81)
69 cd04967 Ig1_Contactin First Ig 99.6 1.1E-13 2.4E-18 84.0 11.5 81 58-140 2-87 (91)
70 cd05858 Ig3_FGFR-2 Third immun 99.6 3.5E-14 7.6E-19 86.0 9.2 75 72-146 1-89 (90)
71 cd05756 Ig1_IL1R_like First im 99.6 3.9E-14 8.5E-19 86.3 8.8 79 66-146 8-94 (94)
72 cd04977 Ig1_NCAM-1_like First 99.6 2.6E-13 5.7E-18 82.4 12.3 84 61-145 4-91 (92)
73 cd05765 Ig_3 Subgroup of the i 99.5 7.4E-14 1.6E-18 82.8 9.0 74 72-146 1-81 (81)
74 cd05750 Ig_Pro_neuregulin Immu 99.5 1.7E-13 3.6E-18 80.1 9.1 69 75-143 1-74 (75)
75 cd05873 Ig_Sema4D_like Immunog 99.5 7.3E-13 1.6E-17 79.2 10.5 70 63-135 2-71 (87)
76 cd05874 Ig6_NrCAM Sixth immuno 99.5 6.8E-13 1.5E-17 77.9 9.0 64 75-140 1-71 (77)
77 cd05875 Ig6_hNeurofascin_like 99.5 9.5E-13 2.1E-17 77.3 9.3 64 75-140 1-71 (77)
78 cd05733 Ig6_L1-CAM_like Sixth 99.5 4.3E-13 9.3E-18 78.8 7.8 64 75-140 1-71 (77)
79 cd05752 Ig1_FcgammaR_like Frst 99.5 4.3E-13 9.4E-18 78.9 7.8 67 58-134 1-68 (78)
80 cd05729 Ig2_FGFR_like Second i 99.5 2.8E-12 6.1E-17 76.5 11.4 80 67-146 4-85 (85)
81 cd05754 Ig3_Perlecan_like Thir 99.5 1.1E-12 2.3E-17 78.6 9.5 77 63-144 7-84 (85)
82 cd05734 Ig7_DSCAM Seventh immu 99.5 8.3E-13 1.8E-17 78.0 8.8 69 75-146 1-79 (79)
83 cd05898 Ig5_KIRREL3 Fifth immu 99.5 4.9E-12 1.1E-16 77.3 12.3 87 57-144 2-97 (98)
84 cd05742 Ig1_VEGFR_like First i 99.5 1.2E-12 2.6E-17 78.2 9.2 75 72-146 1-83 (84)
85 cd05895 Ig_Pro_neuregulin-1 Im 99.4 2.1E-12 4.6E-17 75.6 9.4 69 75-143 1-75 (76)
86 cd04979 Ig_Semaphorin_C Immuno 99.4 2.7E-12 5.8E-17 77.5 9.7 81 65-148 4-88 (89)
87 cd05882 Ig1_Necl-1 First (N-te 99.4 6.6E-12 1.4E-16 76.6 11.4 69 65-133 5-83 (95)
88 cd05757 Ig2_IL1R_like Second i 99.4 3.2E-12 7E-17 77.5 9.7 76 67-145 5-85 (92)
89 cd07701 Ig1_Necl-3 First (N-te 99.4 5.6E-12 1.2E-16 77.0 10.7 82 64-146 4-95 (95)
90 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 6.1E-12 1.3E-16 75.1 10.1 76 72-147 1-83 (84)
91 PHA02826 IL-1 receptor-like pr 99.4 2.3E-12 5E-17 90.5 9.0 109 14-135 97-211 (227)
92 KOG4221|consensus 99.4 5.6E-12 1.2E-16 103.0 10.4 95 58-153 238-332 (1381)
93 smart00408 IGc2 Immunoglobulin 99.3 4.2E-11 9.1E-16 66.8 8.7 63 71-136 1-63 (63)
94 smart00410 IG_like Immunoglobu 99.3 6E-10 1.3E-14 65.7 12.9 81 66-146 3-85 (86)
95 smart00409 IG Immunoglobulin. 99.3 6E-10 1.3E-14 65.7 12.9 81 66-146 3-85 (86)
96 cd05753 Ig2_FcgammaR_like Seco 99.3 6.8E-11 1.5E-15 70.4 8.6 68 64-138 6-74 (83)
97 cd07690 Ig1_CD4 First immunogl 99.3 5.6E-11 1.2E-15 72.2 8.0 71 68-138 3-91 (94)
98 PHA02785 IL-beta-binding prote 99.2 1.9E-10 4.1E-15 85.3 12.2 118 15-138 177-318 (326)
99 cd05727 Ig2_Contactin-2-like S 99.2 4.7E-11 1E-15 72.5 7.2 71 66-138 12-86 (96)
100 cd05871 Ig_Semaphorin_classIII 99.2 2.1E-10 4.5E-15 69.4 9.8 79 67-148 6-90 (91)
101 cd05717 Ig1_Necl-1-3_like Firs 99.2 3.1E-10 6.6E-15 69.3 10.7 80 65-145 5-94 (95)
102 KOG4222|consensus 99.2 2.3E-11 5E-16 99.0 6.2 137 11-154 183-320 (1281)
103 KOG4194|consensus 99.2 1.3E-10 2.8E-15 89.8 9.5 126 16-147 670-796 (873)
104 PF13895 Ig_2: Immunoglobulin 99.2 3.6E-10 7.8E-15 66.4 8.9 78 58-146 2-80 (80)
105 cd05897 Ig2_IL1R2_like Second 99.2 3.5E-10 7.6E-15 68.7 8.8 72 67-138 5-81 (95)
106 PHA02785 IL-beta-binding prote 99.2 2.3E-10 5E-15 84.8 9.2 118 16-140 83-205 (326)
107 cd05845 Ig2_L1-CAM_like Second 99.2 1.7E-10 3.6E-15 70.0 6.9 73 64-138 10-85 (95)
108 cd05862 Ig1_VEGFR First immuno 99.2 5.9E-10 1.3E-14 66.8 9.1 76 72-147 1-85 (86)
109 cd05860 Ig4_SCFR Fourth immuno 99.1 2.7E-09 5.8E-14 65.1 10.8 82 66-147 12-100 (101)
110 PF00047 ig: Immunoglobulin do 99.1 3.7E-10 8E-15 63.7 6.1 60 72-131 1-64 (64)
111 KOG4221|consensus 99.0 4.4E-09 9.6E-14 86.6 11.6 132 12-148 93-230 (1381)
112 cd05872 Ig_Sema4B_like Immunog 99.0 5.7E-09 1.2E-13 62.0 9.1 76 65-145 4-79 (85)
113 cd05885 Ig2_Necl-4 Second immu 99.0 2.9E-09 6.3E-14 62.5 7.6 62 75-137 2-68 (80)
114 cd04983 IgV_TCR_alpha_like Imm 99.0 1.3E-08 2.9E-13 63.5 10.5 74 63-136 4-94 (109)
115 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 1.1E-08 2.5E-13 62.5 9.1 79 66-146 9-104 (104)
116 PF13927 Ig_3: Immunoglobulin 99.0 2.6E-09 5.7E-14 61.7 6.2 74 57-133 1-75 (75)
117 cd05899 IgV_TCR_beta Immunoglo 98.9 1.1E-08 2.5E-13 64.0 8.6 73 62-135 3-95 (110)
118 PHA02826 IL-1 receptor-like pr 98.9 1.8E-08 3.9E-13 71.0 9.6 82 65-148 30-134 (227)
119 cd05759 Ig2_KIRREL3-like Secon 98.9 4.2E-08 9E-13 58.1 9.8 70 75-144 2-80 (82)
120 cd05751 Ig1_LILRB1_like First 98.9 6.9E-09 1.5E-13 62.8 6.4 73 58-134 3-75 (91)
121 cd05881 Ig1_Necl-2 First (N-te 98.9 1E-07 2.2E-12 57.9 11.4 70 65-134 5-84 (95)
122 cd05900 Ig_Aggrecan Immunoglob 98.9 4.8E-08 1E-12 61.3 9.9 78 71-148 1-110 (112)
123 cd05714 Ig_CSPGs_LP Immunoglob 98.8 9.6E-08 2.1E-12 59.4 10.0 78 71-148 1-104 (106)
124 cd05774 Ig_CEACAM_D1 First imm 98.8 6.6E-08 1.4E-12 59.9 9.1 81 63-145 4-104 (105)
125 KOG4222|consensus 98.8 5.3E-09 1.1E-13 85.7 5.3 138 10-151 371-513 (1281)
126 cd05877 Ig_LP_like Immunoglobu 98.8 1E-07 2.2E-12 59.2 9.5 78 71-148 1-104 (106)
127 cd04980 IgV_L_kappa Immunoglob 98.8 7.6E-08 1.6E-12 59.9 8.6 74 61-134 4-93 (106)
128 cd05771 IgC_Tapasin_R Tapasin- 98.7 2.7E-07 5.8E-12 60.2 10.0 114 17-135 3-131 (139)
129 cd00099 IgV Immunoglobulin var 98.7 1.5E-07 3.2E-12 58.3 8.3 69 68-136 2-91 (105)
130 cd05883 Ig2_Necl-2 Second immu 98.7 7.1E-07 1.5E-11 52.6 10.2 74 75-148 2-81 (82)
131 cd05713 Ig_MOG_like Immunoglob 98.7 5.4E-07 1.2E-11 55.4 10.0 75 72-146 1-99 (100)
132 cd04982 IgV_TCR_gamma Immunogl 98.7 1.8E-07 4E-12 59.1 8.0 71 63-133 4-98 (116)
133 cd05718 Ig1_PVR_like First imm 98.7 6.6E-07 1.4E-11 54.7 9.8 74 73-146 1-97 (98)
134 cd05879 Ig_P0 Immunoglobulin ( 98.7 6.6E-07 1.4E-11 56.5 9.9 72 65-136 6-104 (116)
135 cd05878 Ig_Aggrecan_like Immun 98.6 1E-06 2.2E-11 55.2 10.2 78 71-148 1-108 (110)
136 cd05755 Ig2_ICAM-1_like Second 98.6 7.6E-07 1.7E-11 54.5 8.7 78 61-138 5-88 (100)
137 cd05741 Ig_CEACAM_D1_like Firs 98.6 6.8E-07 1.5E-11 53.9 8.1 71 72-144 1-90 (92)
138 cd04984 IgV_L_lambda Immunoglo 98.5 7.7E-07 1.7E-11 54.5 7.6 67 68-134 2-85 (98)
139 cd05880 Ig_EVA1 Immunoglobulin 98.5 2.8E-06 6.1E-11 53.6 9.7 73 64-136 5-103 (115)
140 cd05775 Ig_SLAM-CD84_like_N N- 98.5 9.4E-07 2E-11 54.0 7.1 76 71-146 3-96 (97)
141 cd05715 Ig_P0-like Immunoglobu 98.5 5E-06 1.1E-10 52.5 10.3 73 64-136 5-104 (116)
142 PF07686 V-set: Immunoglobulin 98.5 3.8E-06 8.3E-11 52.3 9.4 84 62-145 6-113 (114)
143 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.4E-06 5.2E-11 52.2 8.0 75 72-146 1-96 (97)
144 cd05901 Ig_Versican Immunoglob 98.4 1.1E-05 2.3E-10 50.8 10.9 39 110-148 77-115 (117)
145 cd07706 IgV_TCR_delta Immunogl 98.4 3.1E-06 6.7E-11 53.4 8.5 73 62-134 4-94 (116)
146 cd07705 Ig2_Necl-1 Second immu 98.4 8.5E-06 1.8E-10 48.3 9.8 63 75-137 2-71 (83)
147 cd05761 Ig2_Necl-1-4_like Seco 98.4 7E-06 1.5E-10 48.6 9.5 63 75-137 2-70 (82)
148 cd05888 Ig1_Nectin-4_like Frst 98.4 7.9E-06 1.7E-10 50.2 9.7 73 74-146 2-99 (100)
149 cd05711 Ig_FcalphaRI Immunoglo 98.4 5E-06 1.1E-10 50.5 8.1 73 58-132 2-75 (94)
150 cd05902 Ig_Neurocan Immunoglob 98.4 1.2E-05 2.7E-10 50.2 10.0 77 72-148 2-108 (110)
151 cd00098 IgC Immunoglobulin Con 98.4 4.2E-06 9.2E-11 50.7 7.8 68 70-137 11-87 (95)
152 cd05886 Ig1_Nectin-1_like Firs 98.3 1.8E-05 3.8E-10 48.6 9.5 35 112-146 63-98 (99)
153 PHA02987 Ig domain OX-2-like p 98.3 1.3E-05 2.9E-10 53.9 9.5 84 66-149 24-124 (189)
154 cd07694 Ig2_CD4 Second immunog 98.3 2.4E-05 5.2E-10 46.3 9.4 76 66-146 8-85 (88)
155 cd07700 IgV_CD8_beta Immunoglo 98.3 7.2E-06 1.6E-10 51.0 7.7 66 68-133 2-93 (107)
156 cd00096 Ig Immunoglobulin doma 98.3 1E-05 2.3E-10 45.0 7.8 61 75-135 1-66 (74)
157 cd05884 Ig2_Necl-3 Second immu 98.3 1.8E-05 3.8E-10 47.0 8.7 61 75-135 2-69 (83)
158 cd05716 Ig_pIgR Immunoglobulin 98.3 1.5E-05 3.2E-10 48.7 8.5 67 68-134 3-86 (98)
159 cd05712 Ig_Siglec_N Immunoglob 98.2 2.5E-05 5.4E-10 49.6 9.6 72 63-134 5-102 (119)
160 cd05720 Ig_CD8_alpha Immunoglo 98.2 1.1E-05 2.3E-10 50.0 6.9 66 68-133 2-90 (104)
161 cd05887 Ig1_Nectin-3_like Firs 98.2 3.1E-05 6.8E-10 47.1 8.5 35 112-146 60-95 (96)
162 cd07698 IgC_MHC_I_alpha3 Class 98.1 0.0001 2.2E-09 44.6 9.5 76 57-135 2-83 (93)
163 PF08205 C2-set_2: CD80-like C 98.0 7.3E-05 1.6E-09 44.7 8.3 66 72-137 14-86 (89)
164 cd04981 IgV_H Immunoglobulin ( 98.0 7.7E-05 1.7E-09 47.2 8.2 71 63-133 3-97 (117)
165 PHA03376 BARF1; Provisional 97.9 0.00014 3.1E-09 49.1 8.9 72 66-137 20-112 (221)
166 cd05889 Ig1_DNAM-1_like First 97.9 0.00028 6E-09 43.0 8.5 33 112-144 60-93 (96)
167 smart00406 IGv Immunoglobulin 97.8 0.0002 4.4E-09 41.6 7.2 57 74-130 1-80 (81)
168 cd05772 IgC_SIRP Signal-regula 97.7 0.0015 3.3E-08 40.8 10.8 67 68-135 17-92 (111)
169 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00026 5.6E-09 43.0 6.9 71 73-144 16-91 (95)
170 smart00407 IGc1 Immunoglobulin 97.7 0.0014 2.9E-08 37.9 9.2 61 75-135 2-71 (75)
171 cd07699 IgC_L Immunoglobulin C 97.7 0.00043 9.3E-09 42.5 7.4 67 69-135 14-89 (100)
172 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00014 3.1E-09 47.3 5.0 42 113-154 2-43 (139)
173 cd05719 Ig2_PVR_like Second im 97.6 0.00076 1.6E-08 41.0 7.3 66 72-138 15-85 (95)
174 cd05766 IgC_MHC_II_beta Class 97.6 0.0031 6.6E-08 38.2 9.9 65 71-135 13-83 (94)
175 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00032 7E-09 39.1 4.8 52 70-134 5-56 (65)
176 cd05770 IgC_beta2m Class I maj 97.5 0.0025 5.5E-08 38.5 9.0 65 70-134 13-82 (93)
177 cd05767 IgC_MHC_II_alpha Class 97.4 0.0024 5.2E-08 38.7 8.3 61 71-134 14-83 (94)
178 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.0049 1.1E-07 37.3 8.6 65 71-135 13-86 (94)
179 cd05768 IgC_CH4 CH4 domain (fo 97.2 0.0018 3.8E-08 39.9 5.8 66 70-135 14-91 (102)
180 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0035 7.5E-08 35.3 5.6 49 72-133 6-54 (69)
181 PHA02633 hypothetical protein; 97.1 0.003 6.6E-08 34.7 5.2 38 113-150 19-56 (63)
182 KOG3515|consensus 97.0 0.00069 1.5E-08 55.0 3.6 81 67-151 17-99 (741)
183 PF07654 C1-set: Immunoglobuli 97.0 0.025 5.4E-07 33.2 9.4 63 71-136 7-78 (83)
184 cd07704 Ig2_Nectin-3-4_like Se 96.9 0.013 2.8E-07 35.7 7.7 68 67-135 11-84 (97)
185 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.016 3.4E-07 36.3 8.0 68 64-131 5-93 (115)
186 cd05769 IgC_TCR_beta T cell re 96.8 0.015 3.3E-07 36.6 7.9 71 69-139 15-96 (115)
187 cd07697 IgC_TCR_gamma T cell r 96.7 0.01 2.3E-07 36.1 6.4 30 71-100 15-46 (96)
188 cd07689 Ig2_VCAM-1 Second immu 96.7 0.012 2.7E-07 35.8 6.5 65 69-134 12-85 (99)
189 KOG1480|consensus 96.6 0.00096 2.1E-08 53.9 1.4 79 60-140 132-211 (909)
190 cd07696 IgC_CH3 CH3 domain (th 96.6 0.02 4.3E-07 34.8 6.9 67 69-135 11-86 (96)
191 KOG4597|consensus 96.5 0.0037 8E-08 48.0 3.7 85 63-147 202-292 (560)
192 cd04985 IgC_CH1 CH1 domain (fi 96.3 0.089 1.9E-06 31.9 8.4 64 71-135 15-87 (95)
193 PF08204 V-set_CD47: CD47 immu 96.2 0.018 3.9E-07 36.9 5.2 77 71-148 26-121 (130)
194 PF07354 Sp38: Zona-pellucida- 96.1 0.016 3.4E-07 41.4 5.0 50 84-135 10-60 (271)
195 cd04986 IgC_CH2 CH2 domain (se 96.0 0.033 7.2E-07 34.1 5.4 66 69-135 16-89 (99)
196 PHA02982 hypothetical protein; 95.9 0.044 9.6E-07 37.9 6.4 73 66-138 33-126 (251)
197 PF06328 Lep_receptor_Ig: Ig-l 95.7 0.19 4.1E-06 30.1 8.0 68 62-130 8-80 (89)
198 PHA03042 CD47-like protein; Pr 95.4 0.16 3.6E-06 36.5 7.9 71 71-147 30-105 (286)
199 PHA03376 BARF1; Provisional 95.0 0.091 2E-06 36.0 5.3 75 17-96 89-163 (221)
200 PF11465 Receptor_2B4: Natural 94.5 0.56 1.2E-05 28.9 7.5 43 103-147 64-107 (108)
201 KOG3515|consensus 94.4 0.12 2.6E-06 42.6 5.8 94 55-148 95-202 (741)
202 PHA03271 envelope glycoprotein 92.7 1.7 3.7E-05 33.5 8.9 44 55-100 245-291 (490)
203 PF05790 C2-set: Immunoglobuli 91.0 2 4.4E-05 25.1 6.8 33 113-145 44-77 (80)
204 PHA02914 Immunoglobulin-like d 90.0 1.8 3.8E-05 33.2 6.6 71 67-137 274-371 (500)
205 PHA03269 envelope glycoprotein 89.2 4.4 9.4E-05 32.0 8.3 43 56-100 328-373 (566)
206 PHA02865 MHC-like TNF binding 86.6 7.7 0.00017 29.3 8.1 21 74-94 216-238 (338)
207 PHA03052 Hypothetical protein; 85.0 3.7 8E-05 23.1 4.4 34 65-98 5-41 (69)
208 PF06832 BiPBP_C: Penicillin-B 82.6 7.8 0.00017 22.9 8.8 73 56-139 9-85 (89)
209 PHA02633 hypothetical protein; 81.7 0.65 1.4E-05 25.7 0.6 38 13-50 16-53 (63)
210 PHA03189 UL14 tegument protein 72.9 37 0.0008 25.4 8.9 26 118-143 139-165 (348)
211 cd05890 Ig2_Nectin-1_like Seco 71.3 20 0.00044 21.8 6.5 59 74-135 22-87 (98)
212 PHA03270 envelope glycoprotein 69.8 17 0.00037 28.4 5.5 42 57-100 221-265 (466)
213 KOG0613|consensus 63.4 12 0.00025 33.2 3.9 87 63-149 340-430 (1205)
214 PHA03273 envelope glycoprotein 61.3 22 0.00048 28.1 4.8 34 66-99 244-280 (486)
215 PF03921 ICAM_N: Intercellular 61.2 34 0.00073 20.6 11.2 85 59-151 5-90 (91)
216 KOG1026|consensus 59.4 6.9 0.00015 32.9 2.0 72 67-147 202-273 (774)
217 PHA03240 envelope glycoprotein 58.2 23 0.00051 24.9 4.0 27 112-138 105-131 (258)
218 COG5475 Uncharacterized small 56.6 30 0.00066 18.6 3.7 27 114-142 20-46 (60)
219 PF02440 Adeno_E3_CR1: Adenovi 49.0 46 0.001 18.5 5.2 21 69-93 2-22 (63)
220 PHA03283 envelope glycoprotein 47.3 57 0.0012 26.4 5.1 36 113-148 135-170 (542)
221 PHA02914 Immunoglobulin-like d 47.1 1.4E+02 0.003 23.5 9.8 38 113-151 82-119 (500)
222 PHA03282 envelope glycoprotein 46.0 63 0.0014 25.8 5.1 25 106-132 120-144 (540)
223 PF11141 DUF2914: Protein of u 39.7 69 0.0015 17.8 6.8 58 88-146 8-65 (66)
224 KOG3611|consensus 29.9 1.3E+02 0.0028 25.7 4.9 58 74-134 571-634 (737)
225 PHA03289 envelope glycoprotein 23.2 2.6E+02 0.0056 21.3 4.9 22 113-134 123-144 (352)
226 PHA03112 IL-18 binding protein 22.6 2.4E+02 0.0051 18.6 6.5 26 70-95 36-63 (141)
227 PHA03282 envelope glycoprotein 21.4 2.4E+02 0.0052 22.8 4.6 22 113-134 334-355 (540)
228 PF15096 G6B: G6B family 20.4 1.7E+02 0.0038 20.2 3.3 13 119-131 81-93 (224)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.86 E-value=2.9e-20 Score=114.40 Aligned_cols=96 Identities=17% Similarity=0.369 Sum_probs=84.7
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+.. .++.+......+.|.|.++...|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 5677788889999999999999999999999999999999865 344444445566899999999999999999999999
Q ss_pred ceEEEEEEEEeeCCCch
Q psy12421 137 TDETNCVVIVESEEESK 153 (168)
Q Consensus 137 ~~~~~~~l~v~~~p~~~ 153 (168)
...+++.|.|.+.|.+|
T Consensus 81 ~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceeEEEEEEEecCCCCC
Confidence 99999999999988765
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=1.1e-18 Score=105.27 Aligned_cols=88 Identities=26% Similarity=0.501 Sum_probs=75.8
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .+...++ .|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGA--VLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCC--EEEECcCChhhCEEEEEEEEcCCC
Confidence 5888889999999999999999999999999999999987765432 2333344 799999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy12421 137 TDETNCVVIVE 147 (168)
Q Consensus 137 ~~~~~~~l~v~ 147 (168)
.....+.|.|.
T Consensus 78 ~~~~~~~l~V~ 88 (88)
T cd05851 78 KDKHQARVYVQ 88 (88)
T ss_pred ceEEEEEEEEC
Confidence 99998888763
No 3
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.78 E-value=9.9e-18 Score=102.06 Aligned_cols=89 Identities=19% Similarity=0.392 Sum_probs=76.3
Q ss_pred CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
.||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+........|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 3688888888999999999999999999999999999999887653 444444444558999999999999999999999
Q ss_pred CcceEEEEEE
Q psy12421 135 HGTDETNCVV 144 (168)
Q Consensus 135 ~g~~~~~~~l 144 (168)
.|.....+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998887765
No 4
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.76 E-value=4.6e-17 Score=97.77 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=68.9
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+........|.|.++...|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356788999999999999999999999999988642 344444444568999999999999999999999999998887
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 764
No 5
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.76 E-value=1.3e-17 Score=97.42 Aligned_cols=74 Identities=32% Similarity=0.574 Sum_probs=63.3
Q ss_pred cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+|+++.|.|.+.|.|.|.+.|+|++..+...........+ .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5889999999999999999999999988654433333444 7999999999999999999999999998888764
No 6
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.76 E-value=5.7e-17 Score=98.19 Aligned_cols=89 Identities=35% Similarity=0.660 Sum_probs=79.7
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+........|.|.++...|+|.|.|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 6788888899999999999999999999999999999998876 455666666788999999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy12421 137 TDETNCVVIV 146 (168)
Q Consensus 137 ~~~~~~~l~v 146 (168)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999988865
No 7
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.75 E-value=7.1e-17 Score=98.87 Aligned_cols=83 Identities=28% Similarity=0.497 Sum_probs=68.5
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
+..+..|+++.|.|.+.|.|.|.+.|++++..+...............|.|.++...|.|.|+|.|.|..|.....+.|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 45688999999999999999999999999998865422222222223699999999999999999999999999999988
Q ss_pred Eee
Q psy12421 146 VES 148 (168)
Q Consensus 146 v~~ 148 (168)
|..
T Consensus 92 V~~ 94 (95)
T cd05730 92 VFA 94 (95)
T ss_pred EEe
Confidence 864
No 8
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.75 E-value=9e-17 Score=97.81 Aligned_cols=81 Identities=30% Similarity=0.507 Sum_probs=68.0
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
...+.+|+++.|.|.+.|.|.|.+.|++++..+... ++.+... +....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 357889999999999999999999999999988653 3444333 33457999999999999999999999999988887
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 764
No 9
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.74 E-value=1.6e-16 Score=97.66 Aligned_cols=90 Identities=27% Similarity=0.506 Sum_probs=70.9
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC------CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
+|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ++.+........|.|.+++..|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 477766666666777899999999999999999999988766432 12222222334799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy12421 131 ATNKHGTDETNCVVIV 146 (168)
Q Consensus 131 a~n~~g~~~~~~~l~v 146 (168)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999888865
No 10
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.74 E-value=1.6e-16 Score=98.01 Aligned_cols=83 Identities=18% Similarity=0.397 Sum_probs=68.3
Q ss_pred CCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCe-EEEecC-----CEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 65 RPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDY-SMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~-~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
....+.+|+.+.|.|.+.| .|+|.+.|+|+|..+..... .+...+ ....|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3467889999999999999 99999999999998875332 222221 1347999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy12421 138 DETNCVVIVE 147 (168)
Q Consensus 138 ~~~~~~l~v~ 147 (168)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999988875
No 11
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=1.8e-16 Score=95.70 Aligned_cols=87 Identities=25% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ...++ .|.|.+++.+|+|.|.|.|.|..|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI-SMSGA--VLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE-EEeCC--EEEECCCCcccCEEEEEEEEECCC
Confidence 355666777888999999999999999999999999988765443322 22334 799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy12421 137 TDETNCVVIV 146 (168)
Q Consensus 137 ~~~~~~~l~v 146 (168)
....+..|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9988888876
No 12
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=4.5e-17 Score=94.77 Aligned_cols=73 Identities=29% Similarity=0.535 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+++.|.|.+.|.|.|.+.|+|++..+..........++ .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999999877553322233445 7999999999999999999999999999888764
No 13
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.74 E-value=9.3e-17 Score=96.88 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=68.3
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec----CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS----DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
|+.+.|.|.+.|.|.|.+.|++++..+... ++.+... ...+.|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 788999999999999999999999888542 3333221 1124799999999999999999999999999999999
Q ss_pred EeeCCCch
Q psy12421 146 VESEEESK 153 (168)
Q Consensus 146 v~~~p~~~ 153 (168)
|.++|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99888764
No 14
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.73 E-value=8.9e-17 Score=96.40 Aligned_cols=84 Identities=27% Similarity=0.522 Sum_probs=70.9
Q ss_pred EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139 (168)
Q Consensus 60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 139 (168)
|...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..... +...++ .|.|.++..+|+|.|+|.|.|..|...
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENR-IEVEAG--DLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCe-EEEeCC--EEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 34566778899999999999999999999999999998865432 233444 799999999999999999999999998
Q ss_pred EEEEEEE
Q psy12421 140 TNCVVIV 146 (168)
Q Consensus 140 ~~~~l~v 146 (168)
.++.|.|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 8888764
No 15
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.73 E-value=1.7e-16 Score=97.73 Aligned_cols=89 Identities=24% Similarity=0.458 Sum_probs=70.1
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECCC------CCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYK 128 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 128 (168)
+|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++. +..+.. .++.+....+...|.|.+++.+|+|.|.
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 57775 47788999999999999999999999999994 333321 2233332234457999999999999999
Q ss_pred EEEEeCCcceEEEEEEEE
Q psy12421 129 CVATNKHGTDETNCVVIV 146 (168)
Q Consensus 129 C~a~n~~g~~~~~~~l~v 146 (168)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888887754
No 16
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=1.6e-16 Score=92.83 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=60.0
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|+|++..+.. .++.+... .+..+|.|.++...|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47899999999999999999998863 33333332 34457999999999999999999999999999888865
No 17
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.72 E-value=3.7e-16 Score=95.83 Aligned_cols=89 Identities=26% Similarity=0.481 Sum_probs=71.1
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC------CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
+|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+........|.|.+++..|+|.|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 46664 556788899999999999999999999999998655431 22222233445799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy12421 131 ATNKHGTDETNCVVIV 146 (168)
Q Consensus 131 a~n~~g~~~~~~~l~v 146 (168)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999988887764
No 18
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.71 E-value=2.5e-16 Score=91.27 Aligned_cols=71 Identities=28% Similarity=0.578 Sum_probs=58.5
Q ss_pred cEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 74 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
++.|.|.+.|.|.|.+.|++++..+...........+ .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999887654332223334 4778899999999999999999999999888764
No 19
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.71 E-value=5.8e-16 Score=93.87 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=68.6
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 141 (168)
.+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..........|.|.++...|.|.|+|.|.|..|....+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 44566688999999999999999999999999988755332 22222334479999999999999999999999999888
Q ss_pred EEEEE
Q psy12421 142 CVVIV 146 (168)
Q Consensus 142 ~~l~v 146 (168)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 87764
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.71 E-value=4.8e-16 Score=90.80 Aligned_cols=73 Identities=27% Similarity=0.447 Sum_probs=61.9
Q ss_pred cEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 74 TCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 74 ~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
.+.|.|.+.|.|.|.+.|++++..+.. .+..+........|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999998854 3444444455668999999999999999999999999998888764
No 21
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.71 E-value=6.2e-16 Score=95.46 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=67.5
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEec-------CCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
...+..|+.+.|.|.+.|.|.|.+.|+|++.++......+... ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 3567789999999999999999999999999987543222111 112479999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy12421 139 ETNCVVIVE 147 (168)
Q Consensus 139 ~~~~~l~v~ 147 (168)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999988774
No 22
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.70 E-value=2.6e-16 Score=92.39 Aligned_cols=73 Identities=30% Similarity=0.566 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+++.|.|.+.|.|.|.+.|++++..+.... .......+ .|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999999999999999875421 12233344 7999999999999999999999999998888876
No 23
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.70 E-value=1.8e-16 Score=92.62 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=59.2
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecC-CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|+|++..+... ++.+...+ +...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 478999999999999999999988642 33332222 3346999999999999999999999999999888864
No 24
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=4.5e-16 Score=90.69 Aligned_cols=73 Identities=29% Similarity=0.553 Sum_probs=61.8
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+++.|.|.+.|.|.|.+.|++++..+...........+ .|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999987654323333444 6999999999999999999999999999888765
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.69 E-value=1.1e-15 Score=93.58 Aligned_cols=85 Identities=22% Similarity=0.481 Sum_probs=66.7
Q ss_pred eecCCeEEecCCcEEEEEEEeccCC-CeeEEEe-CCEECCC-C-CeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCC-
Q psy12421 62 FLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYK-GNRELSK-R-DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKH- 135 (168)
Q Consensus 62 ~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~-~~~~~~~-~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~- 135 (168)
..+....+..|+++.|.|.+.|.|. |.+.|++ ++..+.. . ++.+.. .....+|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 4566678889999999999999995 7999998 6765543 2 222222 2223579999999999999999999997
Q ss_pred cceEEEEEEEE
Q psy12421 136 GTDETNCVVIV 146 (168)
Q Consensus 136 g~~~~~~~l~v 146 (168)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888876
No 26
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.69 E-value=3.9e-16 Score=91.62 Aligned_cols=73 Identities=23% Similarity=0.421 Sum_probs=60.9
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+.+.|.|.+.|.|.|.+.|++++..+... .......++ .|.|.+++..|.|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999988532 112222333 6889999999999999999999999999998876
No 27
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.69 E-value=1.3e-15 Score=93.83 Aligned_cols=90 Identities=24% Similarity=0.465 Sum_probs=68.1
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-----CCeEEEecCC-EEEEEEc--cCCCCCCeEEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-----RDYSMSYSDG-VVSMEII--DCKPEDSGEYK 128 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~~~~~~-~~~l~i~--~~~~~d~G~Y~ 128 (168)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. ........++ ...+.+. .+...|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 58888888899999999999999999999999999999998754 1112222233 2222222 23689999999
Q ss_pred EEEEeCCcc-eEEEEEEEE
Q psy12421 129 CVATNKHGT-DETNCVVIV 146 (168)
Q Consensus 129 C~a~n~~g~-~~~~~~l~v 146 (168)
|.|.|..|. ....+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999999 566666665
No 28
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.69 E-value=1.1e-15 Score=92.67 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=66.0
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-E
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-N 141 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~ 141 (168)
.+.+..+.+|+++.|.|.+.|. .|.+.|++++..+...+..+...++ .|.|.+++.+|+|.|.|.|.|..|.... .
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 3446788899999999999999 9999999999988665543333333 7999999999999999999999998544 5
Q ss_pred EEEEE
Q psy12421 142 CVVIV 146 (168)
Q Consensus 142 ~~l~v 146 (168)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 56655
No 29
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.69 E-value=5.6e-16 Score=88.32 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=55.7
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 147 (168)
++|.|.+.|.|.|.+.|+|+|..+.... .. ..|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----~~--~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-----SQ--HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-----Cc--CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999999999999999886321 22 279999999999999999999999988777776653
No 30
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.69 E-value=9.3e-16 Score=89.76 Aligned_cols=72 Identities=31% Similarity=0.476 Sum_probs=59.4
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|+|++..+... ++.+... .+...|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 478999999999999999999988642 3333222 34457999999999999999999999999998888764
No 31
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.69 E-value=1.8e-15 Score=94.83 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=71.5
Q ss_pred CCCeEEeecCCeE-E---ecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec-C---CEEEEEEccCC-CCCC
Q psy12421 56 SAPNFTFLLRPRV-M---QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS-D---GVVSMEIIDCK-PEDS 124 (168)
Q Consensus 56 ~~p~~~~~~~~~~-~---~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~-~---~~~~l~i~~~~-~~d~ 124 (168)
.+|.|...+.... + ..|..+.|.|.+.|.|.|.+.|++++..+... ++.+... . ....|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 4566655444222 2 24678999999999999999999999988542 2322111 1 12479999987 6999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421 125 GEYKCVATNKHGTDETNCVVIVESEEE 151 (168)
Q Consensus 125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 151 (168)
|.|+|.|.|..|.....+.|.+.+.|+
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 999999999999999999999987763
No 32
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=5.3e-16 Score=89.88 Aligned_cols=70 Identities=27% Similarity=0.484 Sum_probs=58.5
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|++++..+...........+ .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 468999999999999999998877554333333333 7999999999999999999999999998888876
No 33
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.68 E-value=1.8e-15 Score=90.71 Aligned_cols=80 Identities=25% Similarity=0.498 Sum_probs=65.1
Q ss_pred eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
..+..|+.+.|.|.+.|.|.|.+.|++++..+..... ..........|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 4577899999999999999999999999998865321 11222233478999999999999999999999999988887
Q ss_pred EE
Q psy12421 145 IV 146 (168)
Q Consensus 145 ~v 146 (168)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 34
>KOG3513|consensus
Probab=99.68 E-value=5.2e-16 Score=125.47 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=104.3
Q ss_pred CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421 16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN 95 (168)
Q Consensus 16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~ 95 (168)
.|-+.|++..|+|. |.| .+.+............+..+|.++..+++..+..|++++|.|.+.|.|.|.+.|+++|
T Consensus 295 vL~I~nv~~~D~G~--Y~C---~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg 369 (1051)
T KOG3513|consen 295 VLKIPNVQYEDAGE--YEC---IAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNG 369 (1051)
T ss_pred EEEecccCcCCCeE--EEE---EEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCC
Confidence 34477888888776 433 3444444444444456788999999999999999999999999999999999999999
Q ss_pred EECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421 96 RELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152 (168)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 152 (168)
.++..... ......+ .|.|.++...|+|+|+|.|.|..|...+++.|.|......
T Consensus 370 ~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~ 426 (1051)
T KOG3513|consen 370 EPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV 426 (1051)
T ss_pred eecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence 99875321 2334555 7999999999999999999999999999999999877443
No 35
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.68 E-value=3e-15 Score=91.02 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=67.0
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecC-CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++...... ....|.|.+++.+|+|.|+|.|.|.+|....++.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 467889999999999999999999999999987653 33332222 2347999999999999999999999999998887
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 764
No 36
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.67 E-value=2.6e-15 Score=89.94 Aligned_cols=78 Identities=18% Similarity=0.398 Sum_probs=62.5
Q ss_pred CcEEEEEEEeccCCC--eeEEEeCCEECCCC----CeE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 73 QTCKLLCCLSGKPPP--TVKWYKGNRELSKR----DYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 73 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
+++.|.|.+.|.|.| .+.|++++..+... ++. .........|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 57999999887532 221 12222233799999999999999999999999999999999
Q ss_pred EeeCC
Q psy12421 146 VESEE 150 (168)
Q Consensus 146 v~~~p 150 (168)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 37
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=1e-15 Score=89.81 Aligned_cols=73 Identities=27% Similarity=0.481 Sum_probs=61.2
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+.+.|.|.+.|.|.|.+.|++++..+..... ......+ .|.|.+++..|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCC--EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 67899999999999999999999998764321 2222333 7999999999999999999999999998888876
No 38
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=2.3e-15 Score=91.66 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=62.2
Q ss_pred CeEEeecCCeEEecC---CcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCC-CCCCeEEEEEEEe
Q psy12421 58 PNFTFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATN 133 (168)
Q Consensus 58 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n 133 (168)
|.|...+.+..+.++ ..+.|.|.+.|.|.|.+.|++++..+..........++ .|.|.++. ..|+|.|.|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGG--NLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECC--EEEECcCCcCCCCEEEEEEEEe
Confidence 666666666655544 47999999999999999999999887532222233455 78898875 6899999999999
Q ss_pred CCcceEE
Q psy12421 134 KHGTDET 140 (168)
Q Consensus 134 ~~g~~~~ 140 (168)
..|....
T Consensus 80 ~~G~~~s 86 (93)
T cd05849 80 IYGKVRS 86 (93)
T ss_pred CcceEEE
Confidence 9998644
No 39
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.67 E-value=3.6e-15 Score=91.02 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=63.2
Q ss_pred CeEEeecCCeEEe---cCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421 58 PNFTFLLRPRVMQ---VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT 132 (168)
Q Consensus 58 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 132 (168)
|.|...+.+..+. .|+.+.|.|.+.|.|.|.+.|++++..+... .......++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 6677777776554 4689999999999999999999999988542 233333445 68888875 699999999999
Q ss_pred eCCcceEE
Q psy12421 133 NKHGTDET 140 (168)
Q Consensus 133 n~~g~~~~ 140 (168)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99998643
No 40
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=9.9e-16 Score=88.24 Aligned_cols=68 Identities=28% Similarity=0.561 Sum_probs=56.7
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
+.|.|.+.|.|.|.+.|+|++..+..........++ .|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG--YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 468999999999999999999887653322233344 79999999999999999999999999888766
No 41
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.66 E-value=1.7e-15 Score=89.10 Aligned_cols=71 Identities=31% Similarity=0.644 Sum_probs=55.8
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE--EEEEEEe
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVE 147 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~ 147 (168)
++|.|.+.|.|.|.+.|+|++..+.... +.+....+ .|.|.++..+|+|.|.|.|.|..|.... .+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCC--EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4789999999999999999999886532 22322233 7999999999999999999999998754 4455543
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=2.6e-15 Score=86.92 Aligned_cols=70 Identities=30% Similarity=0.525 Sum_probs=57.9
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 147 (168)
++|.|.+.|.|.|.+.|+|++..+..... ...... .|.|.++...|+|.|+|.|.|..|....+..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~~--~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSGH--SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCCC--EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46899999999999999999998876532 222333 79999999999999999999999998777776653
No 43
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.66 E-value=1e-14 Score=89.06 Aligned_cols=85 Identities=22% Similarity=0.420 Sum_probs=64.8
Q ss_pred CeEEeecCCeEEecC---CcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421 58 PNFTFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT 132 (168)
Q Consensus 58 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 132 (168)
|.|...+.+..+.+| +++.|.|.+.|.|.|.+.|++++..+... .......++ .|.|.+.. ..|.|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence 677777777777665 57999999999999999999999988532 222223344 68887765 599999999999
Q ss_pred eCCcceEE-EEEE
Q psy12421 133 NKHGTDET-NCVV 144 (168)
Q Consensus 133 n~~g~~~~-~~~l 144 (168)
|..|...+ .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99998654 4443
No 44
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.65 E-value=1e-14 Score=88.41 Aligned_cols=85 Identities=21% Similarity=0.448 Sum_probs=66.6
Q ss_pred EeecCCeEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
...+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+.. .++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 45677788999999999999999998 899998 4655543 34444434445589999999999999999999999985
Q ss_pred -EEEEEEEE
Q psy12421 139 -ETNCVVIV 146 (168)
Q Consensus 139 -~~~~~l~v 146 (168)
.++..|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 45555543
No 45
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.65 E-value=5.5e-15 Score=87.15 Aligned_cols=74 Identities=26% Similarity=0.420 Sum_probs=61.0
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
|+++.|.|.+.|.|.|.+.|++++..+.. .++.+....+...|.|.++..+|+|.|.|.|.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 67899999999999999999999887755 344444445556899999999999999999999999876655443
No 46
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.65 E-value=2.7e-15 Score=86.83 Aligned_cols=70 Identities=30% Similarity=0.536 Sum_probs=57.9
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|++++..+............ .|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNK--TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCC--EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999999999999998877554333222233 7999999999999999999999999988888876
No 47
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.64 E-value=3e-15 Score=86.20 Aligned_cols=68 Identities=26% Similarity=0.472 Sum_probs=55.7
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|+|++..+.... .. ..+. .|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~-~~~~--~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TF-KRGV--HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EE-ccCC--EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 3689999999999999999999987543 22 1222 6999999999999999999999998777666554
No 48
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=4.8e-15 Score=88.87 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=61.7
Q ss_pred CcEEEEEEEeccCCC--eeEEEeCCEECCCCC----eE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 73 QTCKLLCCLSGKPPP--TVKWYKGNRELSKRD----YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 73 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~----~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
+++.|.|.+.|.|.| .+.|++++..+.... +. .........|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999988 568999998875321 11 11112223799999999999999999999999999999999
Q ss_pred EeeCC
Q psy12421 146 VESEE 150 (168)
Q Consensus 146 v~~~p 150 (168)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 49
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=2.9e-15 Score=86.25 Aligned_cols=69 Identities=33% Similarity=0.574 Sum_probs=58.3
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|++++..+...++... .++ .|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 46899999999999999999887765554443 333 7999999999999999999999999888887764
No 50
>KOG4194|consensus
Probab=99.64 E-value=1.1e-15 Score=117.17 Aligned_cols=142 Identities=22% Similarity=0.247 Sum_probs=108.8
Q ss_pred ceeEEEEeCCCCCCCCCCcccceeccCcceeeEe-eecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421 17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFW-QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN 95 (168)
Q Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~ 95 (168)
+...||...|+|.+++ .+.+....++.-. ...+...|.|+..|.+..+..|+..+|.|.+.|.|.|.+.|-|+|
T Consensus 576 L~L~nVt~td~grYQC-----VvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdg 650 (873)
T KOG4194|consen 576 LHLDNVTFTDEGRYQC-----VVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDG 650 (873)
T ss_pred eeeeeeecccCceEEE-----EEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcC
Confidence 4477888888776433 4444444333321 234566899999999999999999999999999999999999987
Q ss_pred EE-CCC--CCeEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421 96 RE-LSK--RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE 167 (168)
Q Consensus 96 ~~-~~~--~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~ 167 (168)
.. ++. .+... ...+. .+.|.+++.+|.|.|+|.|.|..|..+..+.|.|.+.|..... +...+|.+||
T Consensus 651 gtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~ge 722 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGE 722 (873)
T ss_pred CCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecc
Confidence 65 443 23222 33344 7899999999999999999999999999999999988765544 6677777776
No 51
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=7.7e-15 Score=88.89 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=62.0
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECC---------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELS---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 142 (168)
|+++.|.|.+.|.|.|.+.|++++..+. ..++.+ ..++ .|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-SQTG--DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-CCCC--eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999876421 122222 2234 699999999999999999999999999999
Q ss_pred EEEEeeCC
Q psy12421 143 VVIVESEE 150 (168)
Q Consensus 143 ~l~v~~~p 150 (168)
.|.|.+..
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99998754
No 52
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.63 E-value=7.5e-15 Score=87.45 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=61.9
Q ss_pred CcEEEEEEEec--cCCCeeEEEeCCEECCC--C--CeEEEe---cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 73 QTCKLLCCLSG--KPPPTVKWYKGNRELSK--R--DYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 73 ~~~~l~C~~~g--~p~p~i~W~~~~~~~~~--~--~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
+++.|.|.+.+ .+.+.+.|+++|+.+.. . ++.... ..+ .|.|.+++..|+|.|+|.|.|..+....++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~--~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAG--DLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCC--cEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 36889999977 55889999999999862 1 222211 223 7999999999999999999999999999999
Q ss_pred EEEeeCC
Q psy12421 144 VIVESEE 150 (168)
Q Consensus 144 l~v~~~p 150 (168)
|.|.++|
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 9999876
No 53
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.62 E-value=1.5e-14 Score=83.20 Aligned_cols=68 Identities=37% Similarity=0.624 Sum_probs=54.5
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
|+++.|.|.+.|.|.|.+.|+|++..+..... ... +...|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~-~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE-MPV--GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccc-eec--CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999988765332 111 22268888864 7999999999999998887765
No 54
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=1.2e-14 Score=84.86 Aligned_cols=73 Identities=23% Similarity=0.605 Sum_probs=59.1
Q ss_pred CCcEEEEEEEeccCCCeeEEEe-CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
|+.+.|.|.+.|.|.|.+.|++ ++..+...........+ .|.|..+...|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 56665543333333444 6899999999999999999999999888877754
No 55
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.62 E-value=1.4e-14 Score=85.64 Aligned_cols=78 Identities=26% Similarity=0.453 Sum_probs=62.9
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
.+..+.+|+.+.|.|.+.+. .+.+.|+|+|..+...... ...+. .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~-~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRT-RITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceE-EEeCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 45678899999999999886 6789999999888653322 22333 79999999999999999999999998777766
Q ss_pred EE
Q psy12421 145 IV 146 (168)
Q Consensus 145 ~v 146 (168)
.|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 53
No 56
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.61 E-value=1.1e-14 Score=86.49 Aligned_cols=79 Identities=29% Similarity=0.553 Sum_probs=63.2
Q ss_pred eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
.....|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 34567999999999999999999999999876543222 12233347999999999999999999999999887777653
No 57
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.61 E-value=1.3e-14 Score=84.62 Aligned_cols=70 Identities=30% Similarity=0.635 Sum_probs=55.7
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|++++..+.. ........++ .|.|.+++.+|+|.|+|.|.|..|.. .....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999999999999999988762 2222223344 69999999999999999999999985 55666665
No 58
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=2.4e-14 Score=87.62 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=63.4
Q ss_pred EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccC-----CCCCCeEEEEEEE
Q psy12421 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDC-----KPEDSGEYKCVAT 132 (168)
Q Consensus 60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~ 132 (168)
|...+.+..+..|+++.|.|.+.|.|.|.+.|+|++..+.... ......++ .+.|..+ ...|.|.|+|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEE
Confidence 3456667788899999999999999999999999999886432 12222344 4556555 5889999999999
Q ss_pred eC-Ccce-EEEEEEE
Q psy12421 133 NK-HGTD-ETNCVVI 145 (168)
Q Consensus 133 n~-~g~~-~~~~~l~ 145 (168)
|. .|.. ...+.|.
T Consensus 80 N~~~G~~~s~~~~l~ 94 (95)
T cd05722 80 NDSLGSIVSRTARLT 94 (95)
T ss_pred CCccCcEEEeeeEEe
Confidence 99 9986 4455554
No 59
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.60 E-value=1.8e-14 Score=84.66 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=54.6
Q ss_pred EEEEEeccCCCeeEEEeCCEECCCCCeEE---E-e--cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSM---S-Y--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 77 l~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~-~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
+.|.+.|.|.|.++|+|++..+....+.. . . ......|.|.++...|+|.|+|.|.|..|....++.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 67899999999999999999997644221 1 1 1223479999999999999999999999998877755
No 60
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.60 E-value=1.7e-14 Score=83.32 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=54.7
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
++|.|.+.|.|.|.+.|+|++.++..........+. +|.|.++..+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 468999999999999999999988654323333333 799999999999999999999876665555444
No 61
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.60 E-value=3e-14 Score=85.46 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=62.9
Q ss_pred cCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-E
Q psy12421 64 LRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-T 140 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~ 140 (168)
+.+..+.+|+++.|.|.+ .|.|.|.+.|++++..+.... ......++ .|.|.++...|+|.|+|.|.|..|... .
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC--EEEEeECCcccCEEEEEEEEeccCceeee
Confidence 456778899999999997 799999999999999876522 12222334 799999999999999999999999864 3
Q ss_pred EEEEE
Q psy12421 141 NCVVI 145 (168)
Q Consensus 141 ~~~l~ 145 (168)
...|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 44443
No 62
>KOG3513|consensus
Probab=99.60 E-value=1.3e-14 Score=117.48 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=105.5
Q ss_pred CCCCCCceeEEEEeCCCCCCCCC---CcccceeccCcceeeEeee--cccCCCeEEeecC-CeEEecCCcEEEEEEEecc
Q psy12421 11 LRYPQDNPRLRTRAIPKTIPAYV---PEVQQVRRREPLQITFWQE--TVESAPNFTFLLR-PRVMQVRQTCKLLCCLSGK 84 (168)
Q Consensus 11 ~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~ 84 (168)
..-..+|||.+|..+|.+.+.|. +...++.++.++.+.+... ....+|.|..... ......|+.+.|.|.+.|+
T Consensus 189 ~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~ 268 (1051)
T KOG3513|consen 189 SQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGN 268 (1051)
T ss_pred ecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCC
Confidence 45567899999999997553322 3344555566666665322 2246788765443 5778889999999999999
Q ss_pred CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421 85 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152 (168)
Q Consensus 85 p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 152 (168)
|.|.+.|.|.+......+......+. +|.|.++...|+|.|+|.|.|..|.......|.|...|.=
T Consensus 269 P~P~i~W~k~~g~~~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w 334 (1051)
T KOG3513|consen 269 PTPQIKWRKVDGKPPPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYW 334 (1051)
T ss_pred CCCcEEEEeCCCCCCCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchh
Confidence 99999999988754444434443444 8999999999999999999999999999999999877643
No 63
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.2e-14 Score=85.04 Aligned_cols=70 Identities=31% Similarity=0.580 Sum_probs=55.5
Q ss_pred EEEEEEEeccCCCeeEEEeCCEEC-CC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNREL-SK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~-~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
+.|.|.+.|.|.|.+.|++++... .. .++.....++ .|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368999999999999999998632 11 1222222233 7899999999999999999999999988888876
No 64
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.59 E-value=8.7e-14 Score=85.58 Aligned_cols=87 Identities=20% Similarity=0.393 Sum_probs=68.0
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCC---CCeEEEec----CCEEEEEEccCCCCC-CeEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEY 127 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y 127 (168)
||.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.. .++.+... .....|.|.+++.+| .|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 56664 4566778999999999999999999 6999999988754 23433322 123479999999855 8999
Q ss_pred EEEEEeCCcceEEEEEE
Q psy12421 128 KCVATNKHGTDETNCVV 144 (168)
Q Consensus 128 ~C~a~n~~g~~~~~~~l 144 (168)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998877765
No 65
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.58 E-value=6.2e-14 Score=83.07 Aligned_cols=69 Identities=25% Similarity=0.486 Sum_probs=55.0
Q ss_pred EEEEEeccCCCeeEEEeCCEECCCCCeE-EE--e-----cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 77 LLCCLSGKPPPTVKWYKGNRELSKRDYS-MS--Y-----SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 77 l~C~~~g~p~p~i~W~~~~~~~~~~~~~-~~--~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
+.|.+.|.|.|.+.|+|+|..+...... .. . ......|.|.++...|+|.|+|.|.|..|...+++.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 6799999999999999999988764321 11 1 11233699999999999999999999999988877653
No 66
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.58 E-value=1.9e-14 Score=87.14 Aligned_cols=76 Identities=18% Similarity=0.396 Sum_probs=57.3
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCC----EECCCC--Ce-EEEe-------cCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGN----RELSKR--DY-SMSY-------SDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~----~~~~~~--~~-~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
|+.+.|.|.+.|.|.|.+.|+|++ ..+... .. .... .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 222111 11 1111 111236899999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy12421 138 DETNCVVIVE 147 (168)
Q Consensus 138 ~~~~~~l~v~ 147 (168)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999988873
No 67
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.57 E-value=5.3e-14 Score=82.49 Aligned_cols=73 Identities=27% Similarity=0.561 Sum_probs=59.0
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 147 (168)
+.|.|.+.|.|.|.+.|+|++..+.... ...........|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999875431 122222223379999999999999999999999999999988875
No 68
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.57 E-value=5e-14 Score=83.41 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=57.8
Q ss_pred EeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421 61 TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139 (168)
Q Consensus 61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 139 (168)
...+.+..+..|+.+.|.|.+.|.|.| .+.|++++..+... .. ...+ .|.|..+ .|.|.|.|.|.|..|...
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~--~~~s--~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PA--PSPS--VLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CC--CCCC--EEEEccc--cCCeEEEEEEEeccCcEE
Confidence 345667889999999999999999999 79999999988641 11 1222 6888776 478999999999999765
Q ss_pred E
Q psy12421 140 T 140 (168)
Q Consensus 140 ~ 140 (168)
.
T Consensus 75 s 75 (81)
T cd05749 75 S 75 (81)
T ss_pred e
Confidence 4
No 69
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.57 E-value=1.1e-13 Score=84.00 Aligned_cols=81 Identities=28% Similarity=0.523 Sum_probs=60.9
Q ss_pred CeEEeecCCeEEec---CCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421 58 PNFTFLLRPRVMQV---RQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT 132 (168)
Q Consensus 58 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 132 (168)
|.|...+.+..+.. |.++.|.|.+.|.|.|.+.|++++..+.. ........++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 56666666655544 35799999999999999999999998842 2222333444 68888776 489999999999
Q ss_pred eCCcceEE
Q psy12421 133 NKHGTDET 140 (168)
Q Consensus 133 n~~g~~~~ 140 (168)
|..|....
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997543
No 70
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.57 E-value=3.5e-14 Score=85.98 Aligned_cols=75 Identities=20% Similarity=0.426 Sum_probs=57.6
Q ss_pred CCcEEEEEEEeccCCCeeEEEeC----CEECCCCC---eEEEec-------CCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKG----NRELSKRD---YSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~----~~~~~~~~---~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
|+++.|.|.+.|.|.|.+.|++. +..+.... ..+... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 33332211 111111 11247999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12421 138 DETNCVVIV 146 (168)
Q Consensus 138 ~~~~~~l~v 146 (168)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999988877
No 71
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.56 E-value=3.9e-14 Score=86.31 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=63.2
Q ss_pred CeEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 66 PRVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
...+.+|+.+.|.|.+.| .|.|.+.|||++..+.. ....+...++ .|.|.++..+|+|.|.|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 466778999999999998 68999999999865432 1122222333 7999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12421 138 DETNCVVIV 146 (168)
Q Consensus 138 ~~~~~~l~v 146 (168)
.+..+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 988887764
No 72
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.56 E-value=2.6e-13 Score=82.44 Aligned_cols=84 Identities=26% Similarity=0.500 Sum_probs=63.5
Q ss_pred EeecCCeEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
...+.+..+..|+++.|.|.+.|.| +.+.|++ ++..+.. .++.... .....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 4566678899999999999999997 4999997 5555443 3333322 234457999999999999999999999765
Q ss_pred -eEEEEEEE
Q psy12421 138 -DETNCVVI 145 (168)
Q Consensus 138 -~~~~~~l~ 145 (168)
...++.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 56666664
No 73
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=7.4e-14 Score=82.82 Aligned_cols=74 Identities=26% Similarity=0.545 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCE-----ECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNR-----ELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
|+++.|.|.+.|.|.|.+.|+|++. .+..... ... ......|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 6789999999999999999999742 1111111 111 1112379999999999999999999999999988888
Q ss_pred EE
Q psy12421 145 IV 146 (168)
Q Consensus 145 ~v 146 (168)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 74
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.52 E-value=1.7e-13 Score=80.08 Aligned_cols=69 Identities=29% Similarity=0.530 Sum_probs=55.0
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCe----EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDY----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
+.|.|.+.| .|.|.+.|++++..+..... .+........|.|.++...|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 99999999999988764321 1222334457999999999999999999999999876653
No 75
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.50 E-value=7.3e-13 Score=79.19 Aligned_cols=70 Identities=19% Similarity=0.369 Sum_probs=56.3
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
.|.+..+..|+++.|.|.+. .+.+.+.|++++..+..........++ .|.|.+++..|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 35567888999999999975 478899999999998764222333444 69999999999999999999874
No 76
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=6.8e-13 Score=77.93 Aligned_cols=64 Identities=25% Similarity=0.525 Sum_probs=48.0
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCC----CCCeEEEEEEEeCCcceEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET 140 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 140 (168)
+.|.|.+.|.|.|.+.|++++..+.. ........++ +|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 46899999999999999999988732 1222222344 677766653 3789999999999998654
No 77
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.47 E-value=9.5e-13 Score=77.30 Aligned_cols=64 Identities=28% Similarity=0.503 Sum_probs=48.1
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECC---CCCeEEEecCCEEEEEEccCC----CCCCeEEEEEEEeCCcceEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCK----PEDSGEYKCVATNKHGTDET 140 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~ 140 (168)
+.|.|.+.|.|.|.+.|++++..+. ..+..+...++ .|.|..+. ..|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4689999999999999999998763 22333322344 68887764 24689999999999997654
No 78
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.47 E-value=4.3e-13 Score=78.83 Aligned_cols=64 Identities=28% Similarity=0.590 Sum_probs=48.8
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCC----CCCeEEEEEEEeCCcceEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET 140 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 140 (168)
+.|.|.+.|.|.|.+.|+|++..+... ........+ .|.|..+.. .|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 468999999999999999999987532 222222344 677877653 6899999999999997543
No 79
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.47 E-value=4.3e-13 Score=78.85 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=55.5
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
|.++..+....+.+|++++|.|.+.+.|. +.+.|++++..+.. ..+ .|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~--~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTN--SYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCC--eEEEeec-ccCCEEeEEECCCC
Confidence 45677788889999999999999998875 47999999987632 222 6889999 99999999999875
No 80
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.46 E-value=2.8e-12 Score=76.51 Aligned_cols=80 Identities=28% Similarity=0.507 Sum_probs=63.1
Q ss_pred eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.... .. .........|.|.++...|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 345679999999999999999999999998775422 11 1112333468999999999999999999999998888777
Q ss_pred EE
Q psy12421 145 IV 146 (168)
Q Consensus 145 ~v 146 (168)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 81
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.46 E-value=1.1e-12 Score=78.56 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=62.3
Q ss_pred ecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 141 (168)
.+....+.+|++++|.|.+.+ .|.+.+.|++++..+.... ...++ .|.|.+++.+|+|.|.|.|.|..|....+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~~--~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---MDFNG--ILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---cccCC--EEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 455678889999999999875 7889999999886543321 11233 79999999999999999999999998887
Q ss_pred EEE
Q psy12421 142 CVV 144 (168)
Q Consensus 142 ~~l 144 (168)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 765
No 82
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.46 E-value=8.3e-13 Score=77.97 Aligned_cols=69 Identities=33% Similarity=0.576 Sum_probs=51.3
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECC---------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEE
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELS---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVV 144 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 144 (168)
+.|.|.+.|.|.|.+.|++++.... ..++.. ..++ +|.|.++..+|+|.|.|.|.|..|.. ..++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-LSNG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-ecCC--eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4789999999999999999643211 112222 2334 79999999999999999999999986 556655
Q ss_pred EE
Q psy12421 145 IV 146 (168)
Q Consensus 145 ~v 146 (168)
.|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 43
No 83
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.46 E-value=4.9e-12 Score=77.28 Aligned_cols=87 Identities=18% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCC---CCeEEEec----CCEEEEEEccCCCCC-CeEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEY 127 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y 127 (168)
||.+ ...+...+.+|+++.|.|.+.+.|.| .+.|.+.+..+.. .++.+... +..+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5666 56667889999999999999888877 5689888776643 34444332 346689999998877 6899
Q ss_pred EEEEEeCCcceEEEEEE
Q psy12421 128 KCVATNKHGTDETNCVV 144 (168)
Q Consensus 128 ~C~a~n~~g~~~~~~~l 144 (168)
.|.|.|.+|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998877765
No 84
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.45 E-value=1.2e-12 Score=78.19 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=57.5
Q ss_pred CCcEEEEEEEecc--CCCeeEEEeCCEECCCCCe----EE--EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 72 RQTCKLLCCLSGK--PPPTVKWYKGNRELSKRDY----SM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 72 g~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~----~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
|+.+.|.|.+.|. |.|.+.|.+.+..+..... .. ........|.|.+++.+|+|.|.|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999999 8899999987765432110 00 01112347999999999999999999999999888888
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 85
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.44 E-value=2.1e-12 Score=75.64 Aligned_cols=69 Identities=26% Similarity=0.527 Sum_probs=52.8
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCC---C--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKR---D--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~---~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
+.|.|.+.+ .|.+.+.|++++..+... . +..........|.|.++...|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999874 688999999999887532 1 22222233457999999999999999999999998776653
No 86
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.43 E-value=2.7e-12 Score=77.53 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC-cceEE
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDET 140 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~ 140 (168)
+...+.+|+.+.|.|.+.+ |.+.+.|++++..+... ......... .|.|.+++.+|+|.|.|.|.+.. +....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 3466788999999999877 88999999998766542 122222333 58899999999999999998764 44566
Q ss_pred EEEEEEee
Q psy12421 141 NCVVIVES 148 (168)
Q Consensus 141 ~~~l~v~~ 148 (168)
+..|.|.+
T Consensus 81 ~~~l~V~~ 88 (89)
T cd04979 81 TYSLNVLE 88 (89)
T ss_pred EEEEEEec
Confidence 77777653
No 87
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.43 E-value=6.6e-12 Score=76.55 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=53.6
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC---------CCCCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---------SKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~---------~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
.+..+.+|+++.|.|.+.+.|.|.+.|++.+..+ ...++.+... .....|.|.++..+|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4678889999999999999999999999876532 1223332222 2245899999999999999999987
No 88
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.42 E-value=3.2e-12 Score=77.48 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=59.8
Q ss_pred eEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421 67 RVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 141 (168)
..+.+|....|.|...+ .|.|.+.|+|++..+......+. .++ .|.|.++..+|+|.|+|.+.|..+.....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 45678999999998653 25789999999999876554433 344 79999999999999999999998876555
Q ss_pred EEEE
Q psy12421 142 CVVI 145 (168)
Q Consensus 142 ~~l~ 145 (168)
+...
T Consensus 82 ~t~t 85 (92)
T cd05757 82 VTRT 85 (92)
T ss_pred EEEE
Confidence 5433
No 89
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.42 E-value=5.6e-12 Score=76.99 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=59.5
Q ss_pred cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE---------ECCCCCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR---------ELSKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~---------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
+++..+.+|+++.|.|.+.+.|.+.+.|++.+. .+...++..... ....+|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 456788999999999999999999999986321 122334443222 3445899999999999999999998
Q ss_pred CCcceEEEEEEEE
Q psy12421 134 KHGTDETNCVVIV 146 (168)
Q Consensus 134 ~~g~~~~~~~l~v 146 (168)
.. .......|.|
T Consensus 84 ~~-~~~~~~~l~v 95 (95)
T cd07701 84 MP-VKTSKAYLTV 95 (95)
T ss_pred ec-CccEEEEEEC
Confidence 53 3355555543
No 90
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.41 E-value=6.1e-12 Score=75.11 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=55.6
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCe---EE--EecCCEEEEEEccCCCCCCeEEEEEEEeCCc--ceEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG--TDETNCVV 144 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 144 (168)
|+++.|.|.+.+.|.+.+.|++.+........ .. ......+.|.|.+++.+|+|.|.|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 78899999999999999999987653321110 11 1111245799999999999999999999876 45666666
Q ss_pred EEe
Q psy12421 145 IVE 147 (168)
Q Consensus 145 ~v~ 147 (168)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 91
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.40 E-value=2.3e-12 Score=90.52 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-----ccCCCe
Q psy12421 14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-----GKPPPT 88 (168)
Q Consensus 14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~p~ 88 (168)
...|++.++...|+|. |.| .+.+...-........+.. .+.+..+.+|+.+.|.|.+. +.|.|.
T Consensus 97 ~~~L~I~~v~~~DsG~--Y~C---~a~N~~~~~~~~i~L~V~~------~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~ 165 (227)
T PHA02826 97 SENLWIGNVINIDEGI--YIC---TISSGNICEESTIRLTFDS------GTINYQFNSGKDSKLHCYGTDGISSTFKDYT 165 (227)
T ss_pred CCeEEECCCChHHCEE--EEE---EEEECCcceEEEEEEEEec------CCccceEecCCCEEEEeeCCCCccccCCCce
Confidence 3578999999999776 432 3333221111111111111 22345677899999999976 346799
Q ss_pred eEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 89 VKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 89 i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+.|+|++..+... ++.+...++ .|.|.+++.+|+|.|+|.|....
T Consensus 166 I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 166 LTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 9999999988643 333332333 79999999999999999999864
No 92
>KOG4221|consensus
Probab=99.36 E-value=5.6e-12 Score=102.97 Aligned_cols=95 Identities=27% Similarity=0.431 Sum_probs=78.0
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
-.|...+....+..|+.+.|.|.+.|.|.|.+.|.+++..+.-..+.+...++ ..|.|.+++..|+|.|+|.|.|....
T Consensus 238 ~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~ 316 (1381)
T KOG4221|consen 238 LVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDS 316 (1381)
T ss_pred eeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecc-cceEEeccccccCceEEEEecCCCcc
Confidence 34677788889999999999999999999999999999988765545444322 27999999999999999999997666
Q ss_pred eEEEEEEEEeeCCCch
Q psy12421 138 DETNCVVIVESEEESK 153 (168)
Q Consensus 138 ~~~~~~l~v~~~p~~~ 153 (168)
..++..|.|..+|..+
T Consensus 317 idasaev~V~a~P~~~ 332 (1381)
T KOG4221|consen 317 IDASAEVTVLAPPGFT 332 (1381)
T ss_pred cccceEEEEEcCCCCC
Confidence 6777888887775543
No 93
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.30 E-value=4.2e-11 Score=66.77 Aligned_cols=63 Identities=37% Similarity=0.665 Sum_probs=50.6
Q ss_pred cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
+|+++.|.|.+.+.|.+.+.|++++..+.. ......... .|.|.++...|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGS--TLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCc--EEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988899999999999887762 222222223 799999999999999999998765
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.27 E-value=6e-10 Score=65.72 Aligned_cols=81 Identities=35% Similarity=0.667 Sum_probs=64.3
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeC-CEECC-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..............|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999999888999999998 77665 33444444443457999999999999999999998888777666
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 655
No 95
>smart00409 IG Immunoglobulin.
Probab=99.27 E-value=6e-10 Score=65.72 Aligned_cols=81 Identities=35% Similarity=0.667 Sum_probs=64.3
Q ss_pred CeEEecCCcEEEEEEEeccCCCeeEEEeC-CEECC-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..............|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999999888999999998 77665 33444444443457999999999999999999998888777666
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 655
No 96
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=6.8e-11 Score=70.39 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=53.6
Q ss_pred cCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 64 LRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
+....+.+|+.++|.|.+. +.+.+.+.|+|++..+.... ... .|.|.+++.+|+|.|.|.+.|..|..
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~--~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-----SNS--NLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-----CCc--eEEECccCHHHCEEEEEEEEeCCcee
Confidence 3345788999999999985 46677899999997664211 122 69999999999999999999998753
No 97
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.25 E-value=5.6e-11 Score=72.17 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=52.9
Q ss_pred EEecCCcEEEEEEEeccCCCeeEEEeCCEEC-CC--------------CCeEEEe---cCCEEEEEEccCCCCCCeEEEE
Q psy12421 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SK--------------RDYSMSY---SDGVVSMEIIDCKPEDSGEYKC 129 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~-~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C 129 (168)
.+.+|+++.|.|.+.+.+.+.+.|+++++.. .. .++.... ..+...|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4668999999999999999999999766322 10 1111111 3345579999999999999999
Q ss_pred EEEeCCcce
Q psy12421 130 VATNKHGTD 138 (168)
Q Consensus 130 ~a~n~~g~~ 138 (168)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999887653
No 98
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.25 E-value=1.9e-10 Score=85.29 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCceeEEEEeCCCCCCCCCCcccceeccCc-----ceeeEee--ecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-
Q psy12421 15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREP-----LQITFWQ--ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP- 86 (168)
Q Consensus 15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~- 86 (168)
..|.+.+++..|.|.+.+ . +.+... ....+.. .....||.+ ..+....+..|+.+.|.|.+.|.|.
T Consensus 177 ~~L~i~~v~~~d~G~Y~C--~---~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~ 250 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTC--V---LKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPT 250 (326)
T ss_pred CeEEEeecChhhCeEEEE--E---EEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCC
Confidence 467888999999777433 2 222211 1111111 112345554 3456777888999999999999886
Q ss_pred --CeeEEEeCCEECCCC----CeEEEecC----------CEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 87 --PTVKWYKGNRELSKR----DYSMSYSD----------GVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 87 --p~i~W~~~~~~~~~~----~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
+.+.|+++|..+... ...+...+ ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus 251 ~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 251 TDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 489999999987531 11111100 12369999999999999999999988544
No 99
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.24 E-value=4.7e-11 Score=72.51 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=55.5
Q ss_pred CeEEecCCcEEEEEE-EeccCCCeeEEEeCCEEC--C-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 66 PRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNREL--S-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~--~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
...+.+|+.+.|.|. -.|.|.|.+.|++++..+ . ..+..+...+| .|.|.++..+|+|.|.|.|.|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 356788999999996 458999999999998753 1 22333333456 79999999999999999999987543
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.24 E-value=2.1e-10 Score=69.45 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=56.2
Q ss_pred eEEecCCcEEEEEEEeccCCCeeEEEeCCE--ECC---CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE-eCCcceEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--ELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDET 140 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~ 140 (168)
....+|+++.|.|.. +.|.|.+.||++.. ... ..........+ .|.|.++..+|+|.|+|.+. |..+....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTER--GLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecC--eEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 346789999999996 58999999998432 111 01112222333 69999999999999999998 56776777
Q ss_pred EEEEEEee
Q psy12421 141 NCVVIVES 148 (168)
Q Consensus 141 ~~~l~v~~ 148 (168)
...|.|..
T Consensus 83 ~~~l~v~~ 90 (91)
T cd05871 83 KYTLHVIE 90 (91)
T ss_pred EEEEEEec
Confidence 77777753
No 101
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.23 E-value=3.1e-10 Score=69.30 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=56.4
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------CCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
++..+.+|+++.|.|.+.+.+.+.+.|++.+.. ....++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 456788999999999999888999999853221 1223333321 223457999999999999999999876
Q ss_pred CcceEEEEEEE
Q psy12421 135 HGTDETNCVVI 145 (168)
Q Consensus 135 ~g~~~~~~~l~ 145 (168)
.. ......|.
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 53 34444444
No 102
>KOG4222|consensus
Probab=99.21 E-value=2.3e-11 Score=98.97 Aligned_cols=137 Identities=23% Similarity=0.323 Sum_probs=108.9
Q ss_pred CCCCCCceeEEEEeCCCCCCCCCCcccce-eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCee
Q psy12421 11 LRYPQDNPRLRTRAIPKTIPAYVPEVQQV-RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTV 89 (168)
Q Consensus 11 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i 89 (168)
...-..+.+.|+...|.|.+.+...++.- +...+.++ .++.+|.|...+.+..+..|..+.+.|.+.|.|.|.+
T Consensus 183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~l-----sv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~V 257 (1281)
T KOG4222|consen 183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARL-----SVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTV 257 (1281)
T ss_pred EecCCcEEEeccccCCCceeeeeeccccccccccccee-----eeccCCccccccccceeecccccccccccCCCCCCce
Confidence 35666778999999998875553332211 11222333 4457899999999999999999999999999999999
Q ss_pred EEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421 90 KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE 154 (168)
Q Consensus 90 ~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 154 (168)
.|.|++..++..++.+..... +|.|..+...|.|.|.|.+.|..|....+..|.|..+|....
T Consensus 258 rwkk~~~~~P~~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~k 320 (1281)
T KOG4222|consen 258 RWKKDDPSLPRSRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGK 320 (1281)
T ss_pred eeeccCCCCCccceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCccccc
Confidence 999988888777776665544 799999999999999999999999999999999998876543
No 103
>KOG4194|consensus
Probab=99.20 E-value=1.3e-10 Score=89.83 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=89.2
Q ss_pred CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeC
Q psy12421 16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKG 94 (168)
Q Consensus 16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~ 94 (168)
.+++.||..+|.|. | .++..+.......--...+...|.|.....+..+..|+++.|.|.+.|.|. |.+.|+|+
T Consensus 670 ~f~Itnvk~eD~Gi--Y---tC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~ 744 (873)
T KOG4194|consen 670 VFFITNVKIEDQGI--Y---TCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKE 744 (873)
T ss_pred EEEEecccccccce--e---EEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCC
Confidence 34567888888666 4 233333333222222234445788888899999999999999999999887 99999999
Q ss_pred CEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421 95 NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 147 (168)
++++.-.. +....++...|.+.+...+|+|.|+|...|..|....-..+.+.
T Consensus 745 d~pil~t~-rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 745 DKPILITE-RHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred CCceEEee-cccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 88764321 11123343468888889999999999999999987666555543
No 104
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.18 E-value=3.6e-10 Score=66.36 Aligned_cols=78 Identities=35% Similarity=0.681 Sum_probs=57.5
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
|.+.... ..+..|+.+.|.|.+.+.|.+.+.|++++..+.. ... .+.+..+...|.|.|.|.+.+..+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-------~~~--~~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-------SQN--GLFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-------ESS--EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-------eee--eeeeeeeccccCEEEEEEEEeCCCC
Confidence 4554333 5688999999999999999999999998866552 111 2667888899999999999997653
Q ss_pred -eEEEEEEEE
Q psy12421 138 -DETNCVVIV 146 (168)
Q Consensus 138 -~~~~~~l~v 146 (168)
...++.|.|
T Consensus 71 ~~s~~~~v~V 80 (80)
T PF13895_consen 71 NTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEE
T ss_pred eEeeeEEeeC
Confidence 344555543
No 105
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.18 E-value=3.5e-10 Score=68.69 Aligned_cols=72 Identities=26% Similarity=0.443 Sum_probs=53.1
Q ss_pred eEEecCCcEEEEEEE-e----ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 67 RVMQVRQTCKLLCCL-S----GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
..+.+|....|.|+- . ..+.|.+.|||++..+...........+...|.|.++..+|+|.|+|.+.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 456678899999972 2 34678999999999886433222221112269999999999999999999997664
No 106
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.17 E-value=2.3e-10 Score=84.84 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=74.0
Q ss_pred CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEE-----EeccCCCeeE
Q psy12421 16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCC-----LSGKPPPTVK 90 (168)
Q Consensus 16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~p~i~ 90 (168)
.+++.++...|+|.+.+...+........+.+.+... .+|.+........+.+|..+.+.|. ..+.|.|.+.
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~---~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~ 159 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV---SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADII 159 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec---CCCccceeeccceecccCcEEEECCChhhcccCCCCceEE
Confidence 4788888888877643322222111122233333321 2233333334456778999999997 3467899999
Q ss_pred EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421 91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140 (168)
Q Consensus 91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 140 (168)
|+++.. +...++.. ..++ .|.|.+++..|.|.|+|.+.|..|....
T Consensus 160 W~k~~~-~~~~r~~~-~~~~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 160 WSGHRR-LRNKRLKQ-RTPG--IITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred EccCCc-cCCcceEe-cCCC--eEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 998643 33333222 2233 7999999999999999999999887543
No 107
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.16 E-value=1.7e-10 Score=69.97 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=56.1
Q ss_pred cCCeEEecCCcEEEEEE-EeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCe-EEEEEEEeCCcce
Q psy12421 64 LRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTD 138 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~ 138 (168)
.+...+.+|+.+.|.|. ..|.|.|.+.|++++..... ........+| .|.|.++...|+| .|.|.|.|.....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 35578889999999996 68999999999987654322 2222232445 7999999999999 7999999986443
No 108
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.16 E-value=5.9e-10 Score=66.77 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeccCC--CeeEEEeCCEECCC----CC--eEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421 72 RQTCKLLCCLSGKPP--PTVKWYKGNRELSK----RD--YSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142 (168)
Q Consensus 72 g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~----~~--~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 142 (168)
|+.+.|.|.+.+.+. ..+.|...+..... .. ... ......+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 688999999987664 47799876653311 11 000 0112244799999999999999999999999888888
Q ss_pred EEEEe
Q psy12421 143 VVIVE 147 (168)
Q Consensus 143 ~l~v~ 147 (168)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88775
No 109
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.12 E-value=2.7e-09 Score=65.05 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=65.0
Q ss_pred CeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCC-CeEEEecC-----CEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKR-DYSMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~-~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
...+.+|+.+.|.|...+.|.|. +.|.+.+..+... ........ -.+.|.+..++.+|.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 36788999999999999999998 9999988765331 10111111 12469999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy12421 139 ETNCVVIVE 147 (168)
Q Consensus 139 ~~~~~l~v~ 147 (168)
..++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999988774
No 110
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.10 E-value=3.7e-10 Score=63.70 Aligned_cols=60 Identities=35% Similarity=0.699 Sum_probs=45.1
Q ss_pred CCcEEEEEEE-eccCCCeeEEEeCCEECCCCCeEEEecCCEE---EEEEccCCCCCCeEEEEEE
Q psy12421 72 RQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVA 131 (168)
Q Consensus 72 g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a 131 (168)
|+++.|.|.+ .+.+.+.+.|++++..............+.. .|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 7788999999999876554332222222211 2999999999999999986
No 111
>KOG4221|consensus
Probab=99.03 E-value=4.4e-09 Score=86.58 Aligned_cols=132 Identities=19% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCCCceeEEEEe-----CCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC
Q psy12421 12 RYPQDNPRLRTRA-----IPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP 86 (168)
Q Consensus 12 ~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 86 (168)
=..+.+|+.++.. .+.+. |.|....- ....+-.+.........+.|...+.+..+..|+++.|.|.+.+.|.
T Consensus 93 LsNgSl~i~~v~~~kh~~~~eg~--Yqc~atv~-~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~ 169 (1381)
T KOG4221|consen 93 LSNGSLYISSVLASKHNKVDEGV--YQCLATVE-DVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPV 169 (1381)
T ss_pred ccCCceeEeeecccccccccCce--EEEEEEcc-ccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccC
Confidence 3456788888887 56555 43332222 2222222222234456778888888999999999999999999999
Q ss_pred CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421 87 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES 148 (168)
Q Consensus 87 p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~ 148 (168)
|.+.|.++..++....+.+...+| .|.|.++...|.|.|.|.+.+..-.. ...+.|.|..
T Consensus 170 p~i~w~kn~~pl~~~~r~i~lpsG--~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s 230 (1381)
T KOG4221|consen 170 PTIMWLKNDQPLPLDSRVIVLPSG--ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLS 230 (1381)
T ss_pred ceeEEecccccccCCCcEEEcCCC--cEEecccccCCCceEEEEEecCCcCCccceeEEEecC
Confidence 999999999977765556666677 79999999999999999999876443 3355666663
No 112
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.02 E-value=5.7e-09 Score=62.02 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=55.7
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
+...+..|+.+.|.|...+ +.+.+.|++++..+...........+ |.|..++..|+|.|.|.+. ..|..+.-..+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G---LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y 78 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG---LLILVTSPEHSGTYRCYSE-EEGFQQLVASY 78 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC---CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence 3467889999999999866 47799999999988654333333443 7799999999999999977 34544444433
Q ss_pred E
Q psy12421 145 I 145 (168)
Q Consensus 145 ~ 145 (168)
.
T Consensus 79 ~ 79 (85)
T cd05872 79 S 79 (85)
T ss_pred E
Confidence 3
No 113
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.02 E-value=2.9e-09 Score=62.47 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=47.0
Q ss_pred EEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecC----CEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 75 CKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 75 ~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
+.|.|... ++|++.+.||+++..+....... ..+ ....|.+......|.+.|.|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 68999976 69999999999999986532110 011 1225888888999999999999999765
No 114
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.99 E-value=1.3e-08 Score=63.52 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=54.9
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------------CCCCCeEEEec--CCEEEEEEccCCCCCCe
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------------LSKRDYSMSYS--DGVVSMEIIDCKPEDSG 125 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G 125 (168)
.+....+.+|+++.|.|.+.+.+...+.||+.... ....++.+... .+...|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 45567888999999999998878889999985321 01123333322 35668999999999999
Q ss_pred EEEEEEEeCCc
Q psy12421 126 EYKCVATNKHG 136 (168)
Q Consensus 126 ~Y~C~a~n~~g 136 (168)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999987643
No 115
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.97 E-value=1.1e-08 Score=62.54 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=55.9
Q ss_pred CeEEecCCcEEEEEEE-e----------ccCCCeeEEEeCCEECCCCC------eEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421 66 PRVMQVRQTCKLLCCL-S----------GKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYK 128 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~-~----------g~p~p~i~W~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~ 128 (168)
...+.+|+.+.|.|.. . ......+.|+|++..+.... .++...+. .|.|..+..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 3567789999999985 1 22344799999975443211 13333444 7999999999999999
Q ss_pred EEEEeCCcceEEEEEEEE
Q psy12421 129 CVATNKHGTDETNCVVIV 146 (168)
Q Consensus 129 C~a~n~~g~~~~~~~l~v 146 (168)
|.+.|...-...++.|.|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998766666665543
No 116
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.97 E-value=2.6e-09 Score=61.74 Aligned_cols=74 Identities=27% Similarity=0.554 Sum_probs=49.6
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ ....... ............|.+.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46666666655555554 99999999877 8899999 1111100 00111122233799999999999999999987
No 117
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.93 E-value=1.1e-08 Score=64.03 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=52.8
Q ss_pred eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-----------------CCCCeEEEecC-CEEEEEEccCCC
Q psy12421 62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-----------------SKRDYSMSYSD-GVVSMEIIDCKP 121 (168)
Q Consensus 62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-----------------~~~~~~~~~~~-~~~~l~i~~~~~ 121 (168)
+.+....+.+|++++|.|...+ +.+.+.|||... .+ ...++...... ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3455678899999999999988 778999998642 11 01222222222 345799999999
Q ss_pred CCCeEEEEEEEeCC
Q psy12421 122 EDSGEYKCVATNKH 135 (168)
Q Consensus 122 ~d~G~Y~C~a~n~~ 135 (168)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999987653
No 118
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.90 E-value=1.8e-08 Score=70.97 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=60.2
Q ss_pred CCeEEecCCcEEEEEEEeccC-----------CCeeEEEeCCEEC----CCCC--------eEEEecCCEEEEEEccCCC
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKP-----------PPTVKWYKGNREL----SKRD--------YSMSYSDGVVSMEIIDCKP 121 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p-----------~p~i~W~~~~~~~----~~~~--------~~~~~~~~~~~l~i~~~~~ 121 (168)
....+.+|+.+.|.|.+.+.| .+.+.|+|.+... ...+ ......++ .|.|.+++.
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~--~L~I~~v~~ 107 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSE--NLWIGNVIN 107 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCC--eEEECCCCh
Confidence 346678999999999987644 4589999987542 0010 01111123 799999999
Q ss_pred CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 122 EDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 122 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
.|+|.|.|.|.|..|....++.|.|..
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEec
Confidence 999999999999988888888888753
No 119
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.90 E-value=4.2e-08 Score=58.12 Aligned_cols=70 Identities=26% Similarity=0.515 Sum_probs=48.0
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCeEE-EecCC-----EEEEEEccCCCCCCeEEEEEEEeCCcc--eEEEEEE
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSM-SYSDG-----VVSMEIIDCKPEDSGEYKCVATNKHGT--DETNCVV 144 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~-~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l 144 (168)
+.|.|.+.| .|.+.+.|++++..+....... ...++ .+.|.+......|.|.|+|.|.|.... ...++.|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 579999987 7889999999999876532211 11121 235777777777889999999997544 3444444
No 120
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.90 E-value=6.9e-09 Score=62.79 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=52.9
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
|.+...+ +..+..|++++|.|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|...+.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4555444 45788999999999874 6778899999987543211 111222336999999999999999999886
No 121
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.89 E-value=1e-07 Score=57.94 Aligned_cols=70 Identities=13% Similarity=0.289 Sum_probs=53.8
Q ss_pred CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------CCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
++..+.+|+++.|.|.+.+.....+.|++-+.. ....++.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 457788999999999999887777888876533 2334555544 345667999999999999999988753
No 122
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=4.8e-08 Score=61.26 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=54.8
Q ss_pred cCCcEEEEEEEeccC------------CCeeEEEeCCE-----ECC--------C----CCeEEEe---cCCEEEEEEcc
Q psy12421 71 VRQTCKLLCCLSGKP------------PPTVKWYKGNR-----ELS--------K----RDYSMSY---SDGVVSMEIID 118 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p------------~p~i~W~~~~~-----~~~--------~----~~~~~~~---~~~~~~l~i~~ 118 (168)
.|++++|.|...... .+.+.|+|... .+. . .+..+.. ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999987533 46899998521 010 0 1222221 22455899999
Q ss_pred CCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 119 CKPEDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 119 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
++.+|+|.|.|.+.+.....+....|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998888888777777753
No 123
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.83 E-value=9.6e-08 Score=59.39 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=55.0
Q ss_pred cCCcEEEEEEEeccC------CCeeEEEeCC-----E-EC---CCC------Ce--EEE---ecCCEEEEEEccCCCCCC
Q psy12421 71 VRQTCKLLCCLSGKP------PPTVKWYKGN-----R-EL---SKR------DY--SMS---YSDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p------~p~i~W~~~~-----~-~~---~~~------~~--~~~---~~~~~~~l~i~~~~~~d~ 124 (168)
.|++++|.|.....+ .+.+.|++.. . .+ ... .+ ... ...+..+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987653 5689999862 1 00 000 01 111 123455799999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEee
Q psy12421 125 GEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 125 G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877777788887764
No 124
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.83 E-value=6.6e-08 Score=59.94 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=54.0
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC---------C----------CCCeEEEecCCEEEEEEccCCCCC
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---------S----------KRDYSMSYSDGVVSMEIIDCKPED 123 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~---------~----------~~~~~~~~~~~~~~l~i~~~~~~d 123 (168)
.+.+..+.+|+++.|.|.........+.|+|..... . ...+.....++ +|.|.+++..|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--SL~I~~v~~~D 81 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--SLLIQNVTQKD 81 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--cEEEecCCccc
Confidence 344556778999999997544445589999963211 0 01112233345 79999999999
Q ss_pred CeEEEEEEEeCC-cceEEEEEEE
Q psy12421 124 SGEYKCVATNKH-GTDETNCVVI 145 (168)
Q Consensus 124 ~G~Y~C~a~n~~-g~~~~~~~l~ 145 (168)
+|.|.|.+.+.. ........|.
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999876 3445455554
No 125
>KOG4222|consensus
Probab=98.83 E-value=5.3e-09 Score=85.68 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=99.6
Q ss_pred CCCCCCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEee----ecccCCCeEEeecCCeEEecCCcEEEEEEEeccC
Q psy12421 10 SLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQ----ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKP 85 (168)
Q Consensus 10 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p 85 (168)
++.-.+++-.-+++..|.+++.+ ...+.....-....+.+ +...-+|.+...+.+..+.++.++.|.|.+.|.|
T Consensus 371 svs~~g~L~it~v~~~d~g~Yvc--q~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P 448 (1281)
T KOG4222|consen 371 SVSPTGTLTITNVRQSDEGYYVC--QTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAP 448 (1281)
T ss_pred eecCCCCcccccccccccceEee--cccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCC
Confidence 45666788899999999887444 43332222211111111 1213355666788888999999999999999999
Q ss_pred CCeeEEEeCCEECCCCCeEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421 86 PPTVKWYKGNRELSKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151 (168)
Q Consensus 86 ~p~i~W~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 151 (168)
.|.+.|++++..+....... ....+ .|.+.+.+..|.|.|+|.+.+..|....+..|.|.+...
T Consensus 449 ~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~ 513 (1281)
T KOG4222|consen 449 TPNISWLKDGCNVMNPDSRISQQEIG--SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGS 513 (1281)
T ss_pred CCCchhhhcccccccCCcccceeeec--eeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCc
Confidence 99999999998776533211 22223 699999999999999999999999999999999866543
No 126
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.80 E-value=1e-07 Score=59.25 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=54.7
Q ss_pred cCCcEEEEEEEeccC------CCeeEEEeCCEE-------C-C-----------CCCeEEEe-cCCEEEEEEccCCCCCC
Q psy12421 71 VRQTCKLLCCLSGKP------PPTVKWYKGNRE-------L-S-----------KRDYSMSY-SDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p------~p~i~W~~~~~~-------~-~-----------~~~~~~~~-~~~~~~l~i~~~~~~d~ 124 (168)
.|++++|.|.....| ...+.|+|.... + . ..+..... ..+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999987653 456999986410 0 0 01111111 12345799999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEee
Q psy12421 125 GEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 125 G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888887753
No 127
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=7.6e-08 Score=59.86 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=52.3
Q ss_pred EeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCE--E---CC----------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421 61 TFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNR--E---LS----------KRDYSMSYSDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 61 ~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~--~---~~----------~~~~~~~~~~~~~~l~i~~~~~~d~ 124 (168)
...+....+.+|++++|.|.+.+.. ...+.||+... . +. ..++..........|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3455667889999999999987655 67899997531 1 00 1123332333445799999999999
Q ss_pred eEEEEEEEeC
Q psy12421 125 GEYKCVATNK 134 (168)
Q Consensus 125 G~Y~C~a~n~ 134 (168)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998654
No 128
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.72 E-value=2.7e-07 Score=60.24 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=67.7
Q ss_pred ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEEEeC
Q psy12421 17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKG 94 (168)
Q Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~ 94 (168)
|.+.+++..|+|. |.|.. ..............+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|+++
T Consensus 3 L~i~~v~~~D~G~--Y~C~~---~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 3 LTLPGLTVHDEGT--YICSV---STPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred EEECCCCHHHCEE--EEEEE---EccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 4566788888666 53333 222222222233345578888776666555578899999999985 43 48999999
Q ss_pred CEECCC-----CCe----EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 95 NRELSK-----RDY----SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 95 ~~~~~~-----~~~----~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+..... ... .....++ .+.|.+......+...|.|.+.+..
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 753211 110 1111222 1245555555556779999997754
No 129
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.72 E-value=1.5e-07 Score=58.28 Aligned_cols=69 Identities=25% Similarity=0.460 Sum_probs=50.0
Q ss_pred EEecCCcEEEEEEEecc-CCCeeEEEeCCEE-----C-------------CCCCeEEEecC--CEEEEEEccCCCCCCeE
Q psy12421 68 VMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE-----L-------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGE 126 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~-----~-------------~~~~~~~~~~~--~~~~l~i~~~~~~d~G~ 126 (168)
.+.+|++++|.|.+... +...+.|++.... + ...++.+.... +..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46689999999999876 6778999985321 0 01122222222 55689999999999999
Q ss_pred EEEEEEeCCc
Q psy12421 127 YKCVATNKHG 136 (168)
Q Consensus 127 Y~C~a~n~~g 136 (168)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987765
No 130
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.70 E-value=7.1e-07 Score=52.57 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=50.5
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCeEE-EecC---CEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEEEEee
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSM-SYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIVES 148 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~ 148 (168)
+.|.|.+.| .|.+.|.||+++..+....... .... ..++|.+..-...|...|+|.|.|..-. ......|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 679999876 8999999999999886532111 1111 1345777666677778899999997532 44455666654
No 131
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.69 E-value=5.4e-07 Score=55.35 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=49.0
Q ss_pred CCcEEEEEEEeccC---CCeeEEEeCCE-----------ECCC-------CCeEEE---ecCCEEEEEEccCCCCCCeEE
Q psy12421 72 RQTCKLLCCLSGKP---PPTVKWYKGNR-----------ELSK-------RDYSMS---YSDGVVSMEIIDCKPEDSGEY 127 (168)
Q Consensus 72 g~~~~l~C~~~g~p---~p~i~W~~~~~-----------~~~~-------~~~~~~---~~~~~~~l~i~~~~~~d~G~Y 127 (168)
|+++.|.|...... ...+.|++... .... .+.... ...+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67888999875322 23577877542 1110 111111 112345799999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy12421 128 KCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 128 ~C~a~n~~g~~~~~~~l~v 146 (168)
.|.+.|..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777777777765
No 132
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.68 E-value=1.8e-07 Score=59.06 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=51.2
Q ss_pred ecCCeEEecCCcEEEEEEEec--cCCCeeEEEeCC--EEC------------------CCCCeEEEecC--CEEEEEEcc
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSG--KPPPTVKWYKGN--REL------------------SKRDYSMSYSD--GVVSMEIID 118 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~--~~~------------------~~~~~~~~~~~--~~~~l~i~~ 118 (168)
.+....+.+|+++.|.|...+ .+.+.+.||+.. ..+ ...++...... ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 344567888999999999887 678899999852 111 01233333333 456899999
Q ss_pred CCCCCCeEEEEEEEe
Q psy12421 119 CKPEDSGEYKCVATN 133 (168)
Q Consensus 119 ~~~~d~G~Y~C~a~n 133 (168)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999998764
No 133
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.66 E-value=6.6e-07 Score=54.68 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=49.8
Q ss_pred CcEEEEEEEeccC---CCeeEEEeCCEE----C-----------CC-CCeEEEecC---CEEEEEEccCCCCCCeEEEEE
Q psy12421 73 QTCKLLCCLSGKP---PPTVKWYKGNRE----L-----------SK-RDYSMSYSD---GVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 73 ~~~~l~C~~~g~p---~p~i~W~~~~~~----~-----------~~-~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
+++.|.|.....+ ...+.|+|.... + .. -..+..... +..+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 447899986421 0 00 011111111 345899999999999999999
Q ss_pred EEe-CCcceEEEEEEEE
Q psy12421 131 ATN-KHGTDETNCVVIV 146 (168)
Q Consensus 131 a~n-~~g~~~~~~~l~v 146 (168)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5678887777776
No 134
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.65 E-value=6.6e-07 Score=56.49 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCeEEecCCcEEEEEEEecc----CCCeeEEEe---------------CCEECC-C-C----CeEEE--ecCCEEEEEEc
Q psy12421 65 RPRVMQVRQTCKLLCCLSGK----PPPTVKWYK---------------GNRELS-K-R----DYSMS--YSDGVVSMEII 117 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~g~----p~p~i~W~~---------------~~~~~~-~-~----~~~~~--~~~~~~~l~i~ 117 (168)
....+..|+.+.|.|..... +...+.|.. ++.... . . +.... ...+..++.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 34567789999999998653 345899932 333221 0 1 11111 11234479999
Q ss_pred cCCCCCCeEEEEEEEeCCc
Q psy12421 118 DCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 118 ~~~~~d~G~Y~C~a~n~~g 136 (168)
+++.+|.|.|+|.+.|.-+
T Consensus 86 nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCCcccCEEEEEEEEcCCC
Confidence 9999999999999999754
No 135
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.63 E-value=1e-06 Score=55.18 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=53.7
Q ss_pred cCCcEEEEEEEeccC----------CCeeEEEeCC--EEC-----------CC----CCeEEE---ecCCEEEEEEccCC
Q psy12421 71 VRQTCKLLCCLSGKP----------PPTVKWYKGN--REL-----------SK----RDYSMS---YSDGVVSMEIIDCK 120 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p----------~p~i~W~~~~--~~~-----------~~----~~~~~~---~~~~~~~l~i~~~~ 120 (168)
.|++++|.|.....+ ...+.|+|.. ... .. .+..+. ...+..+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999987644 3678999852 110 00 111111 12344579999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 121 PEDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 121 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
.+|+|.|.|.+............|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998766677777777754
No 136
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.60 E-value=7.6e-07 Score=54.49 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=52.4
Q ss_pred EeecCCeEEecCCcEEEEEEEec-cCCCe--eEEEeCCEECCCCCeEEE---ecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 61 TFLLRPRVMQVRQTCKLLCCLSG-KPPPT--VKWYKGNRELSKRDYSMS---YSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 61 ~~~~~~~~~~~g~~~~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
.+.+....+.+|+.+.|.|.+.| .|.+. +.||+++..+....+... ......+|.+......|...|+|.|.+.
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 34555556789999999999986 77776 699999998865332210 0112335666544445555899999987
Q ss_pred Ccce
Q psy12421 135 HGTD 138 (168)
Q Consensus 135 ~g~~ 138 (168)
.+..
T Consensus 85 l~~~ 88 (100)
T cd05755 85 LRPE 88 (100)
T ss_pred cCcc
Confidence 7553
No 137
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.57 E-value=6.8e-07 Score=53.92 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCC---------------C---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSK---------------R---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~---------------~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
|++++|.|.........+.|++....... . .......+ .+|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--GSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--ceEEEccCCchhcEEEEEEEEc
Confidence 68899999887766778999986532110 0 01111122 3799999999999999999998
Q ss_pred CCcc-eEEEEEE
Q psy12421 134 KHGT-DETNCVV 144 (168)
Q Consensus 134 ~~g~-~~~~~~l 144 (168)
..|. ....+.|
T Consensus 79 ~~~~~~~~~~~l 90 (92)
T cd05741 79 TNGVTENAKFFL 90 (92)
T ss_pred CCCcEEEEEEEE
Confidence 7644 3334444
No 138
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.53 E-value=7.7e-07 Score=54.50 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=48.0
Q ss_pred EEecCCcEEEEEEEecc--CCCeeEEEeCCE--ECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 68 VMQVRQTCKLLCCLSGK--PPPTVKWYKGNR--ELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~--~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
.+.+|+++.|.|...+. ....+.||+... .+. ..++..........|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46689999999998765 566799998532 110 1233333344556799999999999999998
Q ss_pred EEeC
Q psy12421 131 ATNK 134 (168)
Q Consensus 131 a~n~ 134 (168)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 139
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.50 E-value=2.8e-06 Score=53.61 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=48.1
Q ss_pred cCCeEEecCCcEEEEEEEeccC----CCeeEEEeC----CEE--C----------CCCCe--EE--E--ecCCEEEEEEc
Q psy12421 64 LRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKG----NRE--L----------SKRDY--SM--S--YSDGVVSMEII 117 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~----~~~--~----------~~~~~--~~--~--~~~~~~~l~i~ 117 (168)
+....+.+|+++.|.|.....+ ...+.|++. +.. + ....+ +. . ...+..+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4456788999999999976533 246999752 111 1 00111 11 0 11234579999
Q ss_pred cCCCCCCeEEEEEEEeCCc
Q psy12421 118 DCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 118 ~~~~~d~G~Y~C~a~n~~g 136 (168)
+++.+|+|.|.|.+.|..+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998754
No 140
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.49 E-value=9.4e-07 Score=54.05 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEec-cCCCeeEEEeCCEECC--------------CCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 71 VRQTCKLLCCLSG-KPPPTVKWYKGNRELS--------------KRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 71 ~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~--------------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
+|++++|.|.... .....+.|++....+. ...+ +........+|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 6899999998754 5566889998643211 0111 122223335799999999999999999998
Q ss_pred CCcce-EEEEEEEE
Q psy12421 134 KHGTD-ETNCVVIV 146 (168)
Q Consensus 134 ~~g~~-~~~~~l~v 146 (168)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 87654 44555554
No 141
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.47 E-value=5e-06 Score=52.52 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=47.7
Q ss_pred cCCeEEecCCcEEEEEEEeccC----CCeeEEEeCCE------EC-----------CCCCeE----EE--ecCCEEEEEE
Q psy12421 64 LRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGNR------EL-----------SKRDYS----MS--YSDGVVSMEI 116 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~~------~~-----------~~~~~~----~~--~~~~~~~l~i 116 (168)
+....+.+|+.+.|.|...... ...+.|++... .+ ...++. +. ...+..+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456778999999999886532 25689986321 00 011111 11 0122357999
Q ss_pred ccCCCCCCeEEEEEEEeCCc
Q psy12421 117 IDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 117 ~~~~~~d~G~Y~C~a~n~~g 136 (168)
.+++.+|+|.|.|.+.|.-.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999998744
No 142
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.45 E-value=3.8e-06 Score=52.30 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=55.9
Q ss_pred eecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCE-----ECC---------------CCCeEEEec--CCEEEEEEcc
Q psy12421 62 FLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNR-----ELS---------------KRDYSMSYS--DGVVSMEIID 118 (168)
Q Consensus 62 ~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~-----~~~---------------~~~~~~~~~--~~~~~l~i~~ 118 (168)
..+....+.+|+++.|.|... ......+.|++... .+. ..+..+... ....+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 345567888999999999998 55677899998322 110 011122222 3356799999
Q ss_pred CCCCCCeEEEEEEEeC-CcceEEEEEEE
Q psy12421 119 CKPEDSGEYKCVATNK-HGTDETNCVVI 145 (168)
Q Consensus 119 ~~~~d~G~Y~C~a~n~-~g~~~~~~~l~ 145 (168)
++.+|+|.|.|.+... .........|.
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEE
Confidence 9999999999999887 22233344444
No 143
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.43 E-value=2.4e-06 Score=52.22 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=48.7
Q ss_pred CCcEEEEEEEeccCC-CeeEEEeCCE----EC----C------C----CCeEE-EecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421 72 RQTCKLLCCLSGKPP-PTVKWYKGNR----EL----S------K----RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVA 131 (168)
Q Consensus 72 g~~~~l~C~~~g~p~-p~i~W~~~~~----~~----~------~----~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a 131 (168)
|++++|.|....... -.+.|+|... .+ . . .+... ....+..+|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 3689988531 10 0 0 01111 11123457999999999999999987
Q ss_pred Ee-CCcceEEEEEEEE
Q psy12421 132 TN-KHGTDETNCVVIV 146 (168)
Q Consensus 132 ~n-~~g~~~~~~~l~v 146 (168)
.+ +.|..+....|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 75 4677777777776
No 144
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.43 E-value=1.1e-05 Score=50.81 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=33.8
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 110 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
+..+|.|.+++.+|+|.|.|.+.+.....+....|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 445899999999999999999999988888888888753
No 145
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.42 E-value=3.1e-06 Score=53.44 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=51.3
Q ss_pred eecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCE--EC-------------CCCCeEEE--ecCCEEEEEEccCCCCC
Q psy12421 62 FLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNR--EL-------------SKRDYSMS--YSDGVVSMEIIDCKPED 123 (168)
Q Consensus 62 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~--~~-------------~~~~~~~~--~~~~~~~l~i~~~~~~d 123 (168)
..+....+..|+++.|.|..... ....+.||+... .+ ...++.+. ...+..+|.|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 45556788899999999997753 456799998421 10 01233332 12345679999999999
Q ss_pred CeEEEEEEEeC
Q psy12421 124 SGEYKCVATNK 134 (168)
Q Consensus 124 ~G~Y~C~a~n~ 134 (168)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999988753
No 146
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.42 E-value=8.5e-06 Score=48.33 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=43.1
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEec-C-CE----EEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYS-D-GV----VSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~-~-~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
+.|.|.+.| .|.+.+.|++++..+.......... + +. +.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 679999987 6999999999999876532222211 2 11 23555455566778999999987543
No 147
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.42 E-value=7e-06 Score=48.56 Aligned_cols=63 Identities=24% Similarity=0.453 Sum_probs=41.6
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEe-cCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSY-SDG----VVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
+.|.|.+.+ .|.+.+.|++++..+......... .++ .+.|.+......+.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 679999976 588999999999988643211111 122 123444444555678999999987543
No 148
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.40 E-value=7.9e-06 Score=50.22 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=47.5
Q ss_pred cEEEEEEEeccC---CCeeEEEeCCEE-----C---C--------C---CCeEEEe--cCCEEEEEEccCCCCCCeEEEE
Q psy12421 74 TCKLLCCLSGKP---PPTVKWYKGNRE-----L---S--------K---RDYSMSY--SDGVVSMEIIDCKPEDSGEYKC 129 (168)
Q Consensus 74 ~~~l~C~~~g~p---~p~i~W~~~~~~-----~---~--------~---~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C 129 (168)
++.|.|.....+ ...+.|+|.... + . . .+..... ..+..+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578899876443 347889884211 0 0 0 1111211 1224479999999999999999
Q ss_pred EEEe-CCcceEEEEEEEE
Q psy12421 130 VATN-KHGTDETNCVVIV 146 (168)
Q Consensus 130 ~a~n-~~g~~~~~~~l~v 146 (168)
.+.+ +.|..+....|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 5777777777765
No 149
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.37 E-value=5e-06 Score=50.53 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=48.8
Q ss_pred CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132 (168)
Q Consensus 58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 132 (168)
|.+.. .....+..|++++|.|.... ..-.+.|+|++........ ..........|.|..++..|+|.|.|...
T Consensus 2 P~l~a-~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSA-HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEe-cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 44443 33567889999999998755 5567899998864322100 00001112368999999999999999865
No 150
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.36 E-value=1.2e-05 Score=50.22 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCcEEEEEEEeccC-------CCeeEEEeCC-----EEC----C-C----------CCeEEEe---cCCEEEEEEccCCC
Q psy12421 72 RQTCKLLCCLSGKP-------PPTVKWYKGN-----REL----S-K----------RDYSMSY---SDGVVSMEIIDCKP 121 (168)
Q Consensus 72 g~~~~l~C~~~g~p-------~p~i~W~~~~-----~~~----~-~----------~~~~~~~---~~~~~~l~i~~~~~ 121 (168)
|..+.|.|...-.| .+.+.|.+.. ... . . .+..+.. ..+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999965332 4788998751 110 0 0 1111111 12456899999999
Q ss_pred CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 122 EDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 122 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
+|+|.|.|.+..........+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999776677777887753
No 151
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.36 E-value=4.2e-06 Score=50.71 Aligned_cols=68 Identities=25% Similarity=0.430 Sum_probs=46.8
Q ss_pred ecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCe---EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 70 QVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDY---SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 70 ~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~---~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
..|+.+.|.|.+.|. | .+.+.|++++..+..... .....++ .+.|.+......+.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 358899999999996 5 468999999988765321 1112222 123555555556999999999987543
No 152
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.30 E-value=1.8e-05 Score=48.56 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=30.7
Q ss_pred EEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy12421 112 VSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIV 146 (168)
Q Consensus 112 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 146 (168)
.+|.|.+++.+|.|.|.|.+.| +.|+.+....|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 3799999999999999999999 6788787887776
No 153
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.30 E-value=1.3e-05 Score=53.93 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=58.4
Q ss_pred CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECC----------C---CCeE-EEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELS----------K---RDYS-MSYSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~----------~---~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
...+.+|+++.|.|... +...+.+.|+|....+. + .+.. .........|.|.++..+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 35678999999999974 66788899998643221 0 1111 11122334799999999999999998
Q ss_pred EEeC-Cc-ceEEEEEEEEeeC
Q psy12421 131 ATNK-HG-TDETNCVVIVESE 149 (168)
Q Consensus 131 a~n~-~g-~~~~~~~l~v~~~ 149 (168)
...- .| ..+....|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 7754 56 6677777777643
No 154
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.29 E-value=2.4e-05 Score=46.29 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=50.2
Q ss_pred CeEEecCCcEEEEEEEeccC--CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421 66 PRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 143 (168)
+..+..|++++|.|.....+ .+.+.|..-+.... . ....+..+|.+..+...|+|.++|.+....-.....+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~-~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----Q-ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----e-eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 34677899999999985534 45999986443211 1 11122237999999999999999999755333344444
Q ss_pred EEE
Q psy12421 144 VIV 146 (168)
Q Consensus 144 l~v 146 (168)
+.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 444
No 155
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.29 E-value=7.2e-06 Score=51.04 Aligned_cols=66 Identities=27% Similarity=0.524 Sum_probs=44.9
Q ss_pred EEecCCcEEEEEEEecc-CCCeeEEEeCCEE-----C------C------------CCCeEEE--ecCCEEEEEEccCCC
Q psy12421 68 VMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE-----L------S------------KRDYSMS--YSDGVVSMEIIDCKP 121 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~-----~------~------------~~~~~~~--~~~~~~~l~i~~~~~ 121 (168)
.+..|++++|.|...+. ....+.||+...- + . ..++... .......|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998763 3457999985321 0 0 1122221 123345699999999
Q ss_pred CCCeEEEEEEEe
Q psy12421 122 EDSGEYKCVATN 133 (168)
Q Consensus 122 ~d~G~Y~C~a~n 133 (168)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 156
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=1e-05 Score=45.03 Aligned_cols=61 Identities=39% Similarity=0.708 Sum_probs=44.6
Q ss_pred EEEEEEEeccCCCeeEEEeCCEECCCCCe-----EEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 75 CKLLCCLSGKPPPTVKWYKGNRELSKRDY-----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+.|.|.+.+.+.+.+.|++++........ ..........|.+.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36889998878889999998876543221 11112234468999999999999999998775
No 157
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.27 E-value=1.8e-05 Score=46.96 Aligned_cols=61 Identities=20% Similarity=0.467 Sum_probs=41.4
Q ss_pred EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEE-e-cCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMS-Y-SDG----VVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~-~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+.|.|.+.| .|.+.+.|+++|..+........ . .++ .+.|.+..-...+...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 679999987 88889999999998754321111 1 111 2245555555666788999998864
No 158
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.25 E-value=1.5e-05 Score=48.72 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=47.2
Q ss_pred EEecCCcEEEEEEEec-cCCCeeEEEeCCEEC--------------CCCCeEEE--ecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 68 VMQVRQTCKLLCCLSG-KPPPTVKWYKGNREL--------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~--------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
.+.+|++++|.|.... .....+.|++..... ...++.+. ...+...|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5678999999998765 456778999864211 01223322 123556799999999999999998
Q ss_pred EEeC
Q psy12421 131 ATNK 134 (168)
Q Consensus 131 a~n~ 134 (168)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 7764
No 159
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.24 E-value=2.5e-05 Score=49.56 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=48.1
Q ss_pred ecCCeEEecCCcEEEEEEEeccC------CCeeEEEeCCEE-----C----C---------CCCeEEE--ecCCEEEEEE
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKP------PPTVKWYKGNRE-----L----S---------KRDYSMS--YSDGVVSMEI 116 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p------~p~i~W~~~~~~-----~----~---------~~~~~~~--~~~~~~~l~i 116 (168)
.++...+.+|++++|.|...... ...+.||+...- + . ..++... ...+.++|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34456788999999999865321 346899985321 0 0 0122221 1344568999
Q ss_pred ccCCCCCCeEEEEEEEeC
Q psy12421 117 IDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 117 ~~~~~~d~G~Y~C~a~n~ 134 (168)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988654
No 160
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.19 E-value=1.1e-05 Score=50.00 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=45.2
Q ss_pred EEecCCcEEEEEEEeccCCCeeEEEeCCEE----C------CC-------------CCeEEEecCCEEEEEEccCCCCCC
Q psy12421 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRE----L------SK-------------RDYSMSYSDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~----~------~~-------------~~~~~~~~~~~~~l~i~~~~~~d~ 124 (168)
.+.+|++++|.|.........+.||+.... + .. .++..........|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 356899999999986655667999985421 1 00 112221223455799999999999
Q ss_pred eEEEEEEEe
Q psy12421 125 GEYKCVATN 133 (168)
Q Consensus 125 G~Y~C~a~n 133 (168)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998653
No 161
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=3.1e-05 Score=47.13 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=30.5
Q ss_pred EEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy12421 112 VSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIV 146 (168)
Q Consensus 112 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 146 (168)
.+|.|.+++.+|.|.|.|.+.+ +.|+.+.+..|.|
T Consensus 60 ~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 60 ATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred cEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 3799999999999999999765 5889898888876
No 162
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.08 E-value=0.0001 Score=44.62 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=44.0
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCCC---eEEEecCCE-EEEEEccCCCCCCeEEEEE
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKRD---YSMSYSDGV-VSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~---~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~ 130 (168)
+|.+........ ++.+.|.|.+.|. |.. .+.|++++..+.... ......++. .......+...+...|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455544433322 6789999999995 443 889999986432211 111122221 1222333444578999999
Q ss_pred EEeCC
Q psy12421 131 ATNKH 135 (168)
Q Consensus 131 a~n~~ 135 (168)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98764
No 163
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.04 E-value=7.3e-05 Score=44.73 Aligned_cols=66 Identities=21% Similarity=0.468 Sum_probs=42.0
Q ss_pred CCcEEEEEEEe-ccCCCeeEEEeCCEECCCCC--eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 72 RQTCKLLCCLS-GKPPPTVKWYKGNRELSKRD--YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 72 g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
|+.+.+.|.+. +.|.|.+.|+.++..+.... .......+ .+.|.+..-...+...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67999999765 69999999999987662111 11111111 224666554455678889999987544
No 164
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.00 E-value=7.7e-05 Score=47.18 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=48.0
Q ss_pred ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCCE--E---C----C-----------CCCeEEEecC--CEEEEEEcc
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNR--E---L----S-----------KRDYSMSYSD--GVVSMEIID 118 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~--~---~----~-----------~~~~~~~~~~--~~~~l~i~~ 118 (168)
.+....+.+|++++|.|...+.. ...+.||+... . + . ..++...... ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 34567788999999999876533 56689998532 1 1 0 1122222222 334699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy12421 119 CKPEDSGEYKCVATN 133 (168)
Q Consensus 119 ~~~~d~G~Y~C~a~n 133 (168)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 165
>PHA03376 BARF1; Provisional
Probab=97.94 E-value=0.00014 Score=49.09 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=49.7
Q ss_pred CeEEecCCcEEEEEEEe---ccCCCeeEEEeCCE----EC-------------CC-CCeEEEecCCEEEEEEccCCCCCC
Q psy12421 66 PRVMQVRQTCKLLCCLS---GKPPPTVKWYKGNR----EL-------------SK-RDYSMSYSDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~---g~p~p~i~W~~~~~----~~-------------~~-~~~~~~~~~~~~~l~i~~~~~~d~ 124 (168)
.....+|+.+.|+|... .-+.-.+.|+|.+. -+ .. ....+....++.+|.|.++..+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 35667899999999864 22455789999532 11 00 112233345777899999999999
Q ss_pred eEEEEEEEeCCcc
Q psy12421 125 GEYKCVATNKHGT 137 (168)
Q Consensus 125 G~Y~C~a~n~~g~ 137 (168)
|.|.|........
T Consensus 100 GtY~C~fQkge~~ 112 (221)
T PHA03376 100 GNYLCRMKLGETE 112 (221)
T ss_pred ceEEEEEEcCCCc
Confidence 9999999876543
No 166
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.85 E-value=0.00028 Score=42.99 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.6
Q ss_pred EEEEEccCCCCCCeEEEEEEEeC-CcceEEEEEE
Q psy12421 112 VSMEIIDCKPEDSGEYKCVATNK-HGTDETNCVV 144 (168)
Q Consensus 112 ~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l 144 (168)
.+|.|.+++.+|.|.|.|.+.+. .|..+..+.+
T Consensus 60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 37899999999999999988764 6776665544
No 167
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.80 E-value=0.0002 Score=41.60 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=36.7
Q ss_pred cEEEEEEEeccCCC--eeEEEeCCE--E---C---C-----------CCCeEEEec--CCEEEEEEccCCCCCCeEEEEE
Q psy12421 74 TCKLLCCLSGKPPP--TVKWYKGNR--E---L---S-----------KRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 74 ~~~l~C~~~g~p~p--~i~W~~~~~--~---~---~-----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
++.|.|.......+ .+.|++... . + . ..++..... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788987765543 788987532 0 0 0 112222222 4456799999999999999995
No 168
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.75 E-value=0.0015 Score=40.84 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=41.3
Q ss_pred EEecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCeEEE-ecCC-----EEEEEEccCCCCCCe-EEEEEEEeCC
Q psy12421 68 VMQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDYSMS-YSDG-----VVSMEIIDCKPEDSG-EYKCVATNKH 135 (168)
Q Consensus 68 ~~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~~~~-~~~~-----~~~l~i~~~~~~d~G-~Y~C~a~n~~ 135 (168)
....|+.++|.|.+.| .|. ..+.|++||..+........ ..++ .+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3446788999999998 553 58899999998754221111 1221 12344443 334433 5999998764
No 169
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.72 E-value=0.00026 Score=43.02 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=42.4
Q ss_pred CcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421 73 QTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144 (168)
Q Consensus 73 ~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 144 (168)
..+.+.|.+. |+|.+.|.|+++....... ......++ .+.|.+......|...|+|.+.+..-.....+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999876 7999999999872111110 11111122 2245655555566778999999986444444433
No 170
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.67 E-value=0.0014 Score=37.94 Aligned_cols=61 Identities=28% Similarity=0.514 Sum_probs=38.2
Q ss_pred EEEEEEEecc-CC-CeeEEEeCCEECCCCCe--EE-EecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 75 CKLLCCLSGK-PP-PTVKWYKGNRELSKRDY--SM-SYSDG----VVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 75 ~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~--~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+.|.|.+.|. |. ..+.|+++|..+..... .. ...++ .+.|.+......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999985 44 58999999986432210 01 11222 2235555555667789999987653
No 171
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.67 E-value=0.00043 Score=42.50 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=41.3
Q ss_pred EecCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 69 MQVRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
...++.+.|.|.+.| .| ...+.|+++|..+.... ......++. +.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 335677999999998 55 45789999999875321 011122331 124444333345678999988654
No 172
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.61 E-value=0.00014 Score=47.30 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=36.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE 154 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 154 (168)
+|.|.+++..|+|.|.|.+.+..|.......|.|..+|....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~ 43 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRL 43 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEE
Confidence 689999999999999999999888888888999987765533
No 173
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.56 E-value=0.00076 Score=41.00 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=40.0
Q ss_pred CCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 72 RQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 72 g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
.....+.|.+. |+|.+.|.|+++...... .......++ .+.|.+......+...|+|.+.+..-..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 34678899975 799999999997111100 011111222 2346665555566778999999886443
No 174
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.56 E-value=0.0031 Score=38.24 Aligned_cols=65 Identities=25% Similarity=0.521 Sum_probs=39.1
Q ss_pred cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCC---eEEEecCCE-EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRD---YSMSYSDGV-VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~---~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
.|+..+|.|.+.| .|.. .+.|+++|..+.... -.....++. .......+...+...|+|.+....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 5788999999999 4433 679999998865421 111112221 111112233446678999988654
No 175
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.53 E-value=0.00032 Score=39.12 Aligned_cols=52 Identities=29% Similarity=0.473 Sum_probs=35.5
Q ss_pred ecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 70 ~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
-.|.+|+|.|+..+. .+.|.+++..+.... . .+.+.+.. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~-------~--~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD-------E--KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC-------c--eEEeeccC-CCCceEEEEeCCC
Confidence 358899999986532 289999986554421 1 34444555 8899999998543
No 176
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.50 E-value=0.0025 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=39.1
Q ss_pred ecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCe--EEEecCCEE-EEEEccCCCCCCeEEEEEEEeC
Q psy12421 70 QVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDY--SMSYSDGVV-SMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 70 ~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~--~~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
..|....|.|.+.|.-+ ..+.|.++|..+..... ..-..++.. ......+...+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34666789999999443 36799999998762110 111223311 1222234456777899998764
No 177
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.44 E-value=0.0024 Score=38.71 Aligned_cols=61 Identities=20% Similarity=0.425 Sum_probs=37.2
Q ss_pred cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCe---EEEecCCE----EEEEEccCCCCCCeEEEEEEEeC
Q psy12421 71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDY---SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~---~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
.++..+|.|.+.| .|. ..+.|.++|..+..... .....++. +.|.+. ..+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 3566799999999 443 46799999988754211 11112221 124333 34556899998765
No 178
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.31 E-value=0.0049 Score=37.34 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=39.4
Q ss_pred cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
..+.+.|.|.+.| .|. ..+.|+++|..+.... ......++. +.|.+..-...+...|+|.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 3456899999998 553 5789999998863211 111122221 124444333345678999988754
No 179
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.19 E-value=0.0018 Score=39.93 Aligned_cols=66 Identities=21% Similarity=0.441 Sum_probs=38.6
Q ss_pred ecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEec---CCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 70 QVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYS---DGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 70 ~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~---~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
..+..++|.|.+.|..++ .+.|+++|..+..... ..... ++. +.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 346789999999995444 5699999987653211 00111 131 124443322335567999887653
No 180
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.06 E-value=0.0035 Score=35.31 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=33.6
Q ss_pred CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133 (168)
Q Consensus 72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 133 (168)
...+.|.|.. ...+.|++ |..+.... ..+|-+-+......|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence 4478999965 25599999 54333211 12567777778889999998766
No 181
>PHA02633 hypothetical protein; Provisional
Probab=97.06 E-value=0.003 Score=34.71 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 150 (168)
.|+|.+...+|+|.|.|...|..--...++.|.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 69999999999999999999876666777778776544
No 182
>KOG3515|consensus
Probab=97.03 E-value=0.00069 Score=54.98 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=58.3
Q ss_pred eEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVV 144 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l 144 (168)
..+..|+.+.|.|.+.+.| .+.+.|++.+.... .++... ... +|.........-+.|.|.+.|+.|. ......+
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~-~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l 92 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATI-ADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL 92 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccc-cCC--ceeeecchhhhhhhhhhhhcccccCceecceee
Confidence 4788999999999988755 56899999876555 232222 222 5777888888889999999999665 3556666
Q ss_pred EEeeCCC
Q psy12421 145 IVESEEE 151 (168)
Q Consensus 145 ~v~~~p~ 151 (168)
.+.++|.
T Consensus 93 ~v~~~pa 99 (741)
T KOG3515|consen 93 DVDYPPA 99 (741)
T ss_pred ccccCcc
Confidence 6666543
No 183
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.99 E-value=0.025 Score=33.19 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=40.4
Q ss_pred cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCCeE--EE-ecCCEE----EEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRDYS--MS-YSDGVV----SMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~--~~-~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
.+..+.|.|.+.| .|.. .+.|++++..+...... .. ..++.. .|.+. ..+...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 3788999999998 4533 68999999887543211 11 234421 24444 4555689999887643
No 184
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.92 E-value=0.013 Score=35.71 Aligned_cols=68 Identities=18% Similarity=0.375 Sum_probs=41.5
Q ss_pred eEEecCCcEEE-EEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 67 RVMQVRQTCKL-LCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 67 ~~~~~g~~~~l-~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
..+.+|+.+.+ .|.+. |.|.+.|+|+.+..-... .......++ .+.+.+......|...++|.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 45667887777 88855 799999999976321111 111111122 1235555555567778999998764
No 185
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.87 E-value=0.016 Score=36.34 Aligned_cols=68 Identities=13% Similarity=0.266 Sum_probs=44.4
Q ss_pred cCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCE-EC---------------CCCCeEE--EecCCEEEEEEccCCCC
Q psy12421 64 LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNR-EL---------------SKRDYSM--SYSDGVVSMEIIDCKPE 122 (168)
Q Consensus 64 ~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~-~~---------------~~~~~~~--~~~~~~~~l~i~~~~~~ 122 (168)
.....+..|..++|.|.++|.... .++|+|+.. .+ ...++.. ........|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 344567778899999999774433 578887421 11 0111111 22234557999999999
Q ss_pred CCeEEEEEE
Q psy12421 123 DSGEYKCVA 131 (168)
Q Consensus 123 d~G~Y~C~a 131 (168)
|.+.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999964
No 186
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.85 E-value=0.015 Score=36.59 Aligned_cols=71 Identities=14% Similarity=0.342 Sum_probs=42.1
Q ss_pred EecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCe---EEEecC-C----EEEEEEccCCCCC-CeEEEEEEEeCCcc
Q psy12421 69 MQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDY---SMSYSD-G----VVSMEIIDCKPED-SGEYKCVATNKHGT 137 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~---~~~~~~-~----~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 137 (168)
+..+..+.|.|.+.| .|. ..+.|++++..+..... .....+ + .+.|.+......+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 335667899999998 454 37899999988754211 111111 2 1234444333323 56799998876444
Q ss_pred eE
Q psy12421 138 DE 139 (168)
Q Consensus 138 ~~ 139 (168)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 43
No 187
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.73 E-value=0.01 Score=36.07 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCCcEEEEEEEeccCCC--eeEEEeCCEECCC
Q psy12421 71 VRQTCKLLCCLSGKPPP--TVKWYKGNRELSK 100 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~ 100 (168)
.+...+|.|.+.|.-++ .+.|.++|..+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 45678999999994333 5799999987643
No 188
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.72 E-value=0.012 Score=35.77 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=39.1
Q ss_pred EecCCcEEEEEEEec-cCC--CeeEEEeCCEECCCCCeEEE-----ecCCEEEEEEccCCCCCCe-EEEEEEEeC
Q psy12421 69 MQVRQTCKLLCCLSG-KPP--PTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDSG-EYKCVATNK 134 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~ 134 (168)
+.+|..+++.|.+.+ .|. ..+.|++....+....+.-. .......+.+... .+|.| +|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 468999999999875 454 57899987765543322110 0111123444443 55655 899987744
No 189
>KOG1480|consensus
Probab=96.59 E-value=0.00096 Score=53.89 Aligned_cols=79 Identities=27% Similarity=0.397 Sum_probs=59.3
Q ss_pred EEeecCCeEEecCCcEEEEEE-EeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 60 FTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 60 ~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
|...+....+..+..+.+.|. ..+.|...+.|++++..+.+....+..... .+.+..+.+.|.|+|+|.+.|.++..
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~--~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH--NLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC--Cccccchhhhhcccceeeeehhhccc
Confidence 444555567888888999887 458888999999998877663322222222 58888999999999999999998875
Q ss_pred EE
Q psy12421 139 ET 140 (168)
Q Consensus 139 ~~ 140 (168)
..
T Consensus 210 ~~ 211 (909)
T KOG1480|consen 210 KS 211 (909)
T ss_pred cc
Confidence 43
No 190
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.58 E-value=0.02 Score=34.83 Aligned_cols=67 Identities=18% Similarity=0.374 Sum_probs=37.2
Q ss_pred EecCCcEEEEEEEecc-CCC--eeEEEeCCEECCCC--CeEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 69 MQVRQTCKLLCCLSGK-PPP--TVKWYKGNRELSKR--DYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~--~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+..++.++|.|.+.|. -++ .+.|.+++...... .......++. +.|.+..-...+.-.|+|.+....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4568889999999998 333 67999987432110 0011112221 123333322233457999987654
No 191
>KOG4597|consensus
Probab=96.46 E-value=0.0037 Score=47.98 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=61.2
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCeeEEEeC---CEECC--C-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG---NRELS--K-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~---~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 136 (168)
.+....+..+++..++|-+.|++.+.+.|-+. +..+. . ..+..........|.|-+....|+|.|+|.+.|..|
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 34446778899999999999999999999653 22111 1 000001112234689999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy12421 137 TDETNCVVIVE 147 (168)
Q Consensus 137 ~~~~~~~l~v~ 147 (168)
....++.+.+.
T Consensus 282 ~~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 FLRRDVPCSSV 292 (560)
T ss_pred eeeccceeeee
Confidence 99988877754
No 192
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.27 E-value=0.089 Score=31.90 Aligned_cols=64 Identities=16% Similarity=0.305 Sum_probs=36.0
Q ss_pred cCCcEEEEEEEeccCC--CeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 71 VRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 71 ~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
.++.+.|.|.+.|.-+ ..+.|.++|.. .... ......++. +.|.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3557899999998443 46789999987 3211 011111231 123333322223556999887653
No 193
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.18 E-value=0.018 Score=36.94 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=44.3
Q ss_pred cCCcEEEEEEEec-----cCCCeeEEEeCCEECC---CCCeEE-----------EecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421 71 VRQTCKLLCCLSG-----KPPPTVKWYKGNRELS---KRDYSM-----------SYSDGVVSMEIIDCKPEDSGEYKCVA 131 (168)
Q Consensus 71 ~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~---~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~a 131 (168)
-.+++.|.|.+.. .+.-.+.|..++..+- ...... ....|..+|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 4788999998754 2344689998887541 111111 01123345777664433 79999999
Q ss_pred EeCCcceEEEEEEEEee
Q psy12421 132 TNKHGTDETNCVVIVES 148 (168)
Q Consensus 132 ~n~~g~~~~~~~l~v~~ 148 (168)
............|.+..
T Consensus 105 t~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 105 TELSREGETTIELKYRV 121 (130)
T ss_dssp EETTEEEEEEEEEEE--
T ss_pred EecCCCceEEEEEEEEE
Confidence 99887777777777643
No 194
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.09 E-value=0.016 Score=41.40 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=37.4
Q ss_pred cCCCeeEEEe-CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 84 KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 84 ~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
...|.+.|.. ++..+...........| .|.+.+...+++|.|+|...-..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEEe
Confidence 3578999986 45556655444455566 69999999999999999887543
No 195
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.95 E-value=0.033 Score=34.07 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred EecCCcEEEEEEEecc--C-CCeeEEEeCCEECCCC-CeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 69 MQVRQTCKLLCCLSGK--P-PPTVKWYKGNRELSKR-DYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g~--p-~p~i~W~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
+..+..++|.|.+.+. | ...+.|.+++.. ... .......++ .+.|.+..-.......|+|.+....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 4467789999999984 4 347899999864 210 001111122 1134443222334456999987653
No 196
>PHA02982 hypothetical protein; Provisional
Probab=95.91 E-value=0.044 Score=37.87 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=50.6
Q ss_pred CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCE-ECC-------------------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421 66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNR-ELS-------------------KRDYSMSYSDGVVSMEIIDCKPEDS 124 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~-~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~ 124 (168)
+....+++.+.|.|... +.-.....|+++.. -+. ...+........++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 35566799999999853 34455677987532 111 0113345556677899999999999
Q ss_pred eEEEEEEEeCCcce
Q psy12421 125 GEYKCVATNKHGTD 138 (168)
Q Consensus 125 G~Y~C~a~n~~g~~ 138 (168)
|.|+|.+....+..
T Consensus 113 GCYtc~~ks~~~k~ 126 (251)
T PHA02982 113 GCFTCEAKDAEGKE 126 (251)
T ss_pred CceEEEEecCCCch
Confidence 99999999876553
No 197
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.75 E-value=0.19 Score=30.11 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=45.5
Q ss_pred eecCCeEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421 62 FLLRPRVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130 (168)
Q Consensus 62 ~~~~~~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 130 (168)
..+....+..|+.++..|.... .....+.|..++..++.+.+... .++.+..++.+......-.|.|.
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-NDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-STTEEEEEESS--SSEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-CCeEEEEEEccCCCCCceEEEEE
Confidence 3456678889999999998752 24567889988887777666544 44546777877776666666665
No 198
>PHA03042 CD47-like protein; Provisional
Probab=95.42 E-value=0.16 Score=36.53 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=45.4
Q ss_pred cCCcEEEEEEEecc-----CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421 71 VRQTCKLLCCLSGK-----PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145 (168)
Q Consensus 71 ~g~~~~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 145 (168)
-.+++.+.|..... ..-.+.|..++..+-..+ .....+|.+. ....-.|+|+|.|.+..-.......|.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n-----~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN-----NTNTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec-----CCcceEEEEe-ccccCCCceeEEEeecccCccEEEEEE
Confidence 47789999987542 356799999887553211 1112245553 444458999999998765555566665
Q ss_pred Ee
Q psy12421 146 VE 147 (168)
Q Consensus 146 v~ 147 (168)
..
T Consensus 104 ~~ 105 (286)
T PHA03042 104 YV 105 (286)
T ss_pred EE
Confidence 44
No 199
>PHA03376 BARF1; Provisional
Probab=94.96 E-value=0.091 Score=35.95 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=42.5
Q ss_pred ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421 17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR 96 (168)
Q Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~ 96 (168)
+.+.+++..|+|. | .+.++.......+.-....-.|..+....+.......+..++.|..-|.|.|.++|+.+..
T Consensus 89 LvI~~l~lSDdGt--Y---~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 89 LVVTAANISHDGN--Y---LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred EEEEeeeecCCce--E---EEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 4467788888666 4 3344444433333332222223333322221222235677899997789999999987643
No 200
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.54 E-value=0.56 Score=28.95 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=31.4
Q ss_pred eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy12421 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVE 147 (168)
Q Consensus 103 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 147 (168)
+.....+. +|.|..++..|+|.|.-.+.+..|.. ...+.+.|.
T Consensus 64 ~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 64 FNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 33344444 89999999999999999999999986 446666664
No 201
>KOG3515|consensus
Probab=94.43 E-value=0.12 Score=42.58 Aligned_cols=94 Identities=19% Similarity=0.323 Sum_probs=56.6
Q ss_pred cCCCeEEeecCCeEEecCCcEEEEEEE--eccCCCeeEEEeCCEECCCCC---eEEE---ec---CCEEEEEEccCCCCC
Q psy12421 55 ESAPNFTFLLRPRVMQVRQTCKLLCCL--SGKPPPTVKWYKGNRELSKRD---YSMS---YS---DGVVSMEIIDCKPED 123 (168)
Q Consensus 55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~i~W~~~~~~~~~~~---~~~~---~~---~~~~~l~i~~~~~~d 123 (168)
.++|.-...........+..+.+.|.+ .+.|.+.+.|..++....... .... .. ...+.+++......+
T Consensus 95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~ 174 (741)
T KOG3515|consen 95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD 174 (741)
T ss_pred ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence 344444434444556667889999954 468889999998876543211 0000 00 111247788888999
Q ss_pred CeEEEEEEEeC---CcceEEEEEEEEee
Q psy12421 124 SGEYKCVATNK---HGTDETNCVVIVES 148 (168)
Q Consensus 124 ~G~Y~C~a~n~---~g~~~~~~~l~v~~ 148 (168)
.|+|+|.|.|. .+..-....+.+..
T Consensus 175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~ 202 (741)
T KOG3515|consen 175 NGNYTCPANNRNSPGLSFAKQLTIIVEA 202 (741)
T ss_pred CceeEcccccccCccccccceeEeeccc
Confidence 99999999984 33333344444443
No 202
>PHA03271 envelope glycoprotein C; Provisional
Probab=92.74 E-value=1.7 Score=33.48 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.1
Q ss_pred cCCCeEEeecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC
Q psy12421 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK 100 (168)
Q Consensus 55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~ 100 (168)
..+|.+...+ .-+..|+.....|.+...-+| .+.|+.+|.....
T Consensus 245 ~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 245 QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred ecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 3455554333 356689999999998874433 6799999987754
No 203
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.96 E-value=2 Score=25.09 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEccCCCCCCeEEEEEEE-eCCcceEEEEEEE
Q psy12421 113 SMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVVI 145 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~ 145 (168)
..........|+|.+.|.|. +..-.......|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 45566778899999999994 4433334344443
No 204
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.01 E-value=1.8 Score=33.25 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=47.6
Q ss_pred eEEecCCcEEEEEEEec---cCCCeeEEEeCCEECC------------------CCCeEEEec------CCEEEEEEccC
Q psy12421 67 RVMQVRQTCKLLCCLSG---KPPPTVKWYKGNRELS------------------KRDYSMSYS------DGVVSMEIIDC 119 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~~~~~------------------~~~~~~~~~------~~~~~l~i~~~ 119 (168)
..+.+|.++.+.|..+- .....+.|+.-+.++. ...+.+... -..++|+|..+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 45667999999998763 3355678976544321 122333222 11447999999
Q ss_pred CCCCCeEEEEEEEeCCcc
Q psy12421 120 KPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 120 ~~~d~G~Y~C~a~n~~g~ 137 (168)
.....|-|.|.|....-.
T Consensus 354 ~I~N~GCY~~~a~~g~~~ 371 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFK 371 (500)
T ss_pred EEEcCCceEEEEecCcch
Confidence 999999999999876433
No 205
>PHA03269 envelope glycoprotein C; Provisional
Probab=89.15 E-value=4.4 Score=32.04 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=30.7
Q ss_pred CCCeEEeecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC
Q psy12421 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK 100 (168)
Q Consensus 56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~ 100 (168)
.+|.+. ....-+..|+...-.|.+...-++ .+.||.++..+..
T Consensus 328 r~PsVs--V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 328 KRPNIT--VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCCcc--ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 455433 334556789999999998774433 6899999888764
No 206
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.56 E-value=7.7 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.835 Sum_probs=16.8
Q ss_pred cEEEEEEEeccCCC--eeEEEeC
Q psy12421 74 TCKLLCCLSGKPPP--TVKWYKG 94 (168)
Q Consensus 74 ~~~l~C~~~g~p~p--~i~W~~~ 94 (168)
.++|.|.+.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999995444 5689999
No 207
>PHA03052 Hypothetical protein; Provisional
Probab=84.98 E-value=3.7 Score=23.11 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCeEEecCCcEEEEEEEe-c--cCCCeeEEEeCCEEC
Q psy12421 65 RPRVMQVRQTCKLLCCLS-G--KPPPTVKWYKGNREL 98 (168)
Q Consensus 65 ~~~~~~~g~~~~l~C~~~-g--~p~p~i~W~~~~~~~ 98 (168)
+...+..|..+++.|.+. | ...+.+.|.-|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 456788999999999975 3 335678898887766
No 208
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=82.62 E-value=7.8 Score=22.87 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCeEEeecCCeEEecC----CcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421 56 SAPNFTFLLRPRVMQVR----QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131 (168)
Q Consensus 56 ~~p~~~~~~~~~~~~~g----~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 131 (168)
.++.|........+... ....|.+.+.+. .+.+.||.|+..+.... ... .+. +.....|.|+-.+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~-----~~~--~~~---~~~~~~G~h~l~v 77 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQ-----PGH--QLF---WQPDRPGEHTLTV 77 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCC-----CCC--eEE---eCCCCCeeEEEEE
Confidence 34555544444333332 245666666665 55999999999883211 011 121 2234668888777
Q ss_pred EeCCcceE
Q psy12421 132 TNKHGTDE 139 (168)
Q Consensus 132 ~n~~g~~~ 139 (168)
....|...
T Consensus 78 vD~~G~~~ 85 (89)
T PF06832_consen 78 VDAQGRSA 85 (89)
T ss_pred EcCCCCEE
Confidence 76666643
No 209
>PHA02633 hypothetical protein; Provisional
Probab=81.67 E-value=0.65 Score=25.67 Aligned_cols=38 Identities=5% Similarity=-0.042 Sum_probs=25.6
Q ss_pred CCCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEe
Q psy12421 13 YPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFW 50 (168)
Q Consensus 13 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 50 (168)
..+.+||++....|+|.+.+.-.+.+......+.+.+.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 67889999999999887544344444555555555554
No 210
>PHA03189 UL14 tegument protein; Provisional
Probab=72.90 E-value=37 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=18.0
Q ss_pred cCCCCCCeEEEEEEEeCCc-ceEEEEE
Q psy12421 118 DCKPEDSGEYKCVATNKHG-TDETNCV 143 (168)
Q Consensus 118 ~~~~~d~G~Y~C~a~n~~g-~~~~~~~ 143 (168)
++..+.+|.|.|...|... ....++.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEee
Confidence 4566779999999998754 4444443
No 211
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.33 E-value=20 Score=21.77 Aligned_cols=59 Identities=15% Similarity=0.436 Sum_probs=33.0
Q ss_pred cEEEEEE-EeccCCCeeEEEeC--CEECCCCCeEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421 74 TCKLLCC-LSGKPPPTVKWYKG--NRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH 135 (168)
Q Consensus 74 ~~~l~C~-~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 135 (168)
.+...|. +.|+|++.|.|.-+ |.. ........++. +.+.+......|.-..+|.+....
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~---etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA---EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce---eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence 4566898 56899999999743 211 01111111221 123444455566777889887653
No 212
>PHA03270 envelope glycoprotein C; Provisional
Probab=69.82 E-value=17 Score=28.45 Aligned_cols=42 Identities=17% Similarity=0.464 Sum_probs=29.7
Q ss_pred CCeEEeecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC
Q psy12421 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK 100 (168)
Q Consensus 57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~ 100 (168)
+|.+... ..-+..|+...-.|.+...-++ .+.||.++..+..
T Consensus 221 ~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 221 RPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred CCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 4444332 3456689999999998774433 6899999998753
No 213
>KOG0613|consensus
Probab=63.38 E-value=12 Score=33.24 Aligned_cols=87 Identities=21% Similarity=0.141 Sum_probs=59.0
Q ss_pred ecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCC---eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 63 LLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 63 ~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
...+.....+..+.+.|...+.+.|. +.|+.+........ .............+..+...+.+.|.|-|.|..|..
T Consensus 340 ~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 340 RNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred ccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 33345566677889999999988887 89998755332211 111112222357788888999999999999999987
Q ss_pred EEEEEEEEeeC
Q psy12421 139 ETNCVVIVESE 149 (168)
Q Consensus 139 ~~~~~l~v~~~ 149 (168)
.......+..+
T Consensus 420 ~~~~~~~vs~~ 430 (1205)
T KOG0613|consen 420 QTIAESTVSEE 430 (1205)
T ss_pred cccchhhcccc
Confidence 76665555443
No 214
>PHA03273 envelope glycoprotein C; Provisional
Probab=61.33 E-value=22 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=26.9
Q ss_pred CeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECC
Q psy12421 66 PRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELS 99 (168)
Q Consensus 66 ~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~ 99 (168)
..-+..|+.....|.+...-+| .+.|+.++..+.
T Consensus 244 ~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 244 VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3456789999999998774433 689999999887
No 215
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=61.23 E-value=34 Score=20.60 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=49.9
Q ss_pred eEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421 59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137 (168)
Q Consensus 59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 137 (168)
.+.+.++...+..|..+.+.|..+ -+.| .+.|-..- .+.......+=..+.+.+++. | ..-.|.+.-.-..
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L-----~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q 76 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSL-----SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQ 76 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSS-----EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEE
T ss_pred EEEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEec-----CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeE
Confidence 445677788999999999999874 3444 44554321 111122223333677788885 4 5778998875334
Q ss_pred eEEEEEEEEeeCCC
Q psy12421 138 DETNCVVIVESEEE 151 (168)
Q Consensus 138 ~~~~~~l~v~~~p~ 151 (168)
...++.|.|-..|.
T Consensus 77 ~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 77 SSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEB--S
T ss_pred EEeEEeeEEeCCCC
Confidence 56677777766553
No 216
>KOG1026|consensus
Probab=59.44 E-value=6.9 Score=32.92 Aligned_cols=72 Identities=17% Similarity=0.321 Sum_probs=45.8
Q ss_pred eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
..+..|..+++.|...+.|.|.+.|+..+............-... ...+ -++.|.+.|..|.......+.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~-~~~~--------~~~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSE-CEVL--------ENDLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccccc-ceee--------echhhHHHHhhhhcCceeeeEE
Confidence 456778999999999999999999998776544321110000000 0111 1178999998888776665554
Q ss_pred e
Q psy12421 147 E 147 (168)
Q Consensus 147 ~ 147 (168)
.
T Consensus 273 ~ 273 (774)
T KOG1026|consen 273 D 273 (774)
T ss_pred e
Confidence 3
No 217
>PHA03240 envelope glycoprotein M; Provisional
Probab=58.17 E-value=23 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421 112 VSMEIIDCKPEDSGEYKCVATNKHGTD 138 (168)
Q Consensus 112 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 138 (168)
++|.|..+..+|.|+|.-.-....|..
T Consensus 105 stL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 105 STLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ceEEEEEEeecCcchhhhccCCCCCCc
Confidence 379999999999999964433344543
No 218
>COG5475 Uncharacterized small protein [Function unknown]
Probab=56.57 E-value=30 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=18.0
Q ss_pred EEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421 114 MEIIDCKPEDSGEYKCVATNKHGTDETNC 142 (168)
Q Consensus 114 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 142 (168)
+++.... ..|.|.|...+..|..+..+
T Consensus 20 Mtvs~~s--s~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 20 MTVSGYS--SDGMYECRWFDGYGVKREAF 46 (60)
T ss_pred EEEeccc--cCCeEEEEEecCCCcccccc
Confidence 4444433 33999999999988654433
No 219
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.96 E-value=46 Score=18.49 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=14.0
Q ss_pred EecCCcEEEEEEEeccCCCeeEEEe
Q psy12421 69 MQVRQTCKLLCCLSGKPPPTVKWYK 93 (168)
Q Consensus 69 ~~~g~~~~l~C~~~g~p~p~i~W~~ 93 (168)
+..|+.++| .|-+...+.||+
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 456777776 454556789984
No 220
>PHA03283 envelope glycoprotein E; Provisional
Probab=47.31 E-value=57 Score=26.36 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=30.3
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 148 (168)
.|.|.+.+..++|.|+-...+..+.....+.|.|+.
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 699999999999999999888777556666777876
No 221
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=47.10 E-value=1.4e+02 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=24.3
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 151 (168)
.+.+.++..+|.|.|.|...-. +.......|.+..+|.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn-~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLG-DNESHKHEILVRKAPK 119 (500)
T ss_pred EEEecCcccccCCcEEEEEEeC-CceeEEEEEEEEEccc
Confidence 5778889999999999987633 2333333344444443
No 222
>PHA03282 envelope glycoprotein E; Provisional
Probab=46.04 E-value=63 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=20.1
Q ss_pred EecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421 106 SYSDGVVSMEIIDCKPEDSGEYKCVAT 132 (168)
Q Consensus 106 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 132 (168)
...++ +|.|.++..+|+|.|.-.+.
T Consensus 120 s~~n~--tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 120 AVVNG--TLVLREARETDSGMYVLSVS 144 (540)
T ss_pred eEecc--eEEEeeccccCCceEEEEec
Confidence 33455 69999999999999998754
No 223
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.71 E-value=69 Score=17.83 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=33.4
Q ss_pred eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146 (168)
Q Consensus 88 ~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 146 (168)
...|++++.....-.+.+. .+.-.+..-..+.....|.+...+....|..-......|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3469999886643222221 111123333444456889999998888887665555443
No 224
>KOG3611|consensus
Probab=29.89 E-value=1.3e+02 Score=25.75 Aligned_cols=58 Identities=28% Similarity=0.583 Sum_probs=33.6
Q ss_pred cEEEEEEEeccCCCeeEEEeCCE------ECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421 74 TCKLLCCLSGKPPPTVKWYKGNR------ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 74 ~~~l~C~~~g~p~p~i~W~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
...|.|...+.-.+ +.|+.... .............+ .+.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~~~~G--~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSRTDEG--GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceeecccC--ceeEEEEeeccCcccccccccC
Confidence 36777876554333 77873211 11111222222233 3677788899999999998764
No 225
>PHA03289 envelope glycoprotein I; Provisional
Probab=23.20 E-value=2.6e+02 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEccCCCCCCeEEEEEEEeC
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
-|.|.+-+..|+|.|.-.+.=.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeC
Confidence 6889999999999999887744
No 226
>PHA03112 IL-18 binding protein; Provisional
Probab=22.61 E-value=2.4e+02 Score=18.60 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=19.0
Q ss_pred ecCCcEEEEEEEecc-CC-CeeEEEeCC
Q psy12421 70 QVRQTCKLLCCLSGK-PP-PTVKWYKGN 95 (168)
Q Consensus 70 ~~g~~~~l~C~~~g~-p~-p~i~W~~~~ 95 (168)
..++++.|.|.+-+. |. .-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 358899999998754 54 457899654
No 227
>PHA03282 envelope glycoprotein E; Provisional
Probab=21.43 E-value=2.4e+02 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEccCCCCCCeEEEEEEEeC
Q psy12421 113 SMEIIDCKPEDSGEYKCVATNK 134 (168)
Q Consensus 113 ~l~i~~~~~~d~G~Y~C~a~n~ 134 (168)
.|.+.+....++|.|.|++.-.
T Consensus 334 dL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 6899999999999999987743
No 228
>PF15096 G6B: G6B family
Probab=20.38 E-value=1.7e+02 Score=20.25 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=10.5
Q ss_pred CCCCCCeEEEEEE
Q psy12421 119 CKPEDSGEYKCVA 131 (168)
Q Consensus 119 ~~~~d~G~Y~C~a 131 (168)
+...|+|.|.|.-
T Consensus 81 Ls~GDSGTFfCkG 93 (224)
T PF15096_consen 81 LSAGDSGTFFCKG 93 (224)
T ss_pred hhcCCccceEecC
Confidence 3568999999983
Done!