RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12421
(168 letters)
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 129 bits (327), Expect = 7e-40
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGV 111
T++ AP T +R + Q + + + KP VKWY EL + + + GV
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+++EI+DC +DSG Y+ V TN G + V +
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 108 bits (273), Expect = 8e-32
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVV 112
++ P F L + ++ Q + + G+P P V W + + + +R ++ G+
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
+ I+ + D+G Y C A N++G + + V E
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 108 bits (272), Expect = 1e-31
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVS 113
AP ++ + + + GKP P +WYK ++ S R Y D V
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
+ I D EDS A N G ++ ++V+++
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 106 bits (266), Expect = 9e-31
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
+ S P L+ + K +G+P PT W K + + Y +S G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+EI DSG Y C N G+ ++C + +++
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 105 bits (265), Expect = 2e-30
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYS-DGV 111
AP F L+ + C ++G P P + W+K +++S + Y++ DG
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
S+ +D G Y +A N G ++V++
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 103 bits (259), Expect = 9e-30
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+E AP+F+ +L+ + Q L C + G P P + W + + + + GV
Sbjct: 7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI--QYARSTCEAGVA 64
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I D PED G Y C+A N G + V V
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 101 bits (254), Expect = 6e-29
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSK-RDYSMSYSDGVVSM 114
+ + V + K +C + T V WY G R+L Y ++Y DGV +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ D D G Y+C N +G D + + V+ E
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 101 bits (254), Expect = 7e-29
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
A R + ++ + C G+P PTV W + + L + + ++ +
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ EI + D G Y V N G E + ++
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 101 bits (253), Expect = 1e-28
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVS 113
P L + + + C +G+P P V W G R++ + + + +D + +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ I+D + +D G Y N+ G+D + + S
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 102 bits (256), Expect = 1e-28
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYS- 108
+E P FT + + + C + G P P V W+K + + + R + + Y
Sbjct: 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
+G S+ I + +D +Y C A N G ++VE+ + E +
Sbjct: 95 EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 101 bits (253), Expect = 1e-28
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
+ S P + ++ ++ +L ++G P T W K +++ + S+
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ I+ + E G Y + NK G+ + + V
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 100 bits (252), Expect = 2e-28
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVV 112
S P F RP + +L C + G+PPP V W KG ++L+ S
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + P D+G Y C A N G V V
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 100 bits (250), Expect = 3e-28
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYS-DGVVS 113
P F + + + C++ +SG P P V WY R + S + M S G+ S
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ + D+G Y CVA N+ G + V ++E
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 99.4 bits (248), Expect = 6e-28
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
+ P+F +Q + C++ C +SG P P + W + + + +G
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
V S+ I D+G Y C+ATN+ G + + ++V ++E
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 98.5 bits (246), Expect = 9e-28
Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
P R ++ T L G P PT W G+ + + S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
K DSG YK N+ G DE VIV+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 97.9 bits (244), Expect = 3e-27
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYS 108
+ AP F + + + + + KL C +S PPP + W + N + + R +
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
G V++ I D +D+G Y A N+ G N + V +
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 99.8 bits (249), Expect = 4e-27
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
AP ++ ++ + +L C + G+P P +KWY+ +EL R Y MS +
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
+ ++ + ED G Y C+ATN+ G ET+ +++++
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT 100
Score = 86.3 bits (214), Expect = 8e-22
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 53 TVESAPNFT---FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYS 108
+++ P F L V T +L G+P P + W+ G + L + + ++ +
Sbjct: 96 LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT 155
Query: 109 DGVVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + + + + +G+YK +N GT + V ++
Sbjct: 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 97.9 bits (244), Expect = 3e-26
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSM-SYSDGV 111
AP+F LR ++ + L+C ++G P P VKWY+ +E+ Y + + G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ I +D+ Y+ ATN+ G+ + VE +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101
Score = 87.1 bits (216), Expect = 4e-22
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSME 115
P + + + SGKP P + W KG + Y + + S+
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV 163
Query: 116 IID-CKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + +D+G Y A N+ G D+ + V
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 97.1 bits (242), Expect = 4e-26
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDG 110
AP FT L+ V+ T +SG P P V W++ + +S +S+SDG
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ I +SG Y ATN G + ++V++E
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Score = 94.8 bits (236), Expect = 3e-25
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
+ + PNF L+ ++ +L ++G P P VK+Y+ E+ S D+ +S
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ S+ I + PEDSG Y ATN G + ++V+
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 94.4 bits (235), Expect = 7e-26
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 54 VESAPNFTF---LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
+ P L + + +V + L+ GKP P V W KG L + SD
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ DSGEY+ ++ D + V
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 97.1 bits (242), Expect = 3e-25
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
V+ P F P L C L G PP V W+K REL S + Y + + +
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
S+ I++ D GEY+C A+N G+ + +++
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 94.4 bits (235), Expect = 3e-24
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 53 TVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
V+ P F L P R+++ + + C + G P V WYK E+ + + MS+ +
Sbjct: 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
V +E+ + EDSG+Y C A N G+ ++ + V+
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Score = 85.9 bits (213), Expect = 5e-21
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSM 114
+ P F + + ++ C ++G P + W K NRE+ +Y M+ + ++
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
++ D+G+Y C A+N G D + + V+
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 92.4 bits (230), Expect = 3e-25
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
AP T L + + ++ ++ C SG PPP + W+K N L D + DG
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKDGNR 64
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
++ I + ED G Y C A + G + I+E +E
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 94.2 bits (234), Expect = 8e-25
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVV 112
A L +Q + L C + G PPP V W K + L + +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
I DSG+Y V NK+G++ ++ V V E
Sbjct: 175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 81.5 bits (201), Expect = 7e-20
Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 73 QTCKLLCCLS-GKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
+ +L ++ V W + D + + ++I + P D G+Y
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77
Query: 131 ATNKHGTDETNCVVIVESEEESKEQQE 157
+ + + ++ +E+ + +
Sbjct: 78 LFDGKTGHQKTVDLSGQAYDEAYAEFQ 104
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 92.6 bits (230), Expect = 4e-24
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
ET E+ P FT + +C +G P P + W K +++S R + + DG
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 111 VVSMEIID--CKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
S+ I P D Y+CVA+N G + + V E++
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
Score = 84.1 bits (208), Expect = 6e-21
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 45 LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL----SK 100
L + + P + +V++ +T +LC SG P P + W+K + +
Sbjct: 96 LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN 155
Query: 101 RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEESKEQ 155
S+ + +++I + D G+Y+CVATN GT + + V +
Sbjct: 156 GRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 88.3 bits (219), Expect = 1e-23
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 55 ESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS 108
+ AP +T + R+ V T K C G P PT++W K +E + R
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S+ + P D G Y CV N++G+ + V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 91.5 bits (227), Expect = 6e-23
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDG 110
+ P+F L V L C ++ K + WYK RE+S D + DG
Sbjct: 2 IDPFTGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDG 59
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
+ ++ I + +D+G Y+ + + G D++ ++ E+ +E +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVC 106
Score = 88.0 bits (218), Expect = 1e-21
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 2/126 (1%)
Query: 27 KTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP 86
KT+ + A L +Q + L C + G PP
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP 251
Query: 87 PTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
P V W K + L + I DSG+Y V NK+G++ ++ V
Sbjct: 252 PEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
Query: 145 IVESEE 150
V E
Sbjct: 312 SVFIPE 317
Score = 79.6 bits (196), Expect = 2e-18
Identities = 10/114 (8%), Positives = 30/114 (26%), Gaps = 11/114 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLC----------CLSGKPPPTVKWYKGNRELSK-R 101
E+ + ++ K+ V W +
Sbjct: 94 VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD 153
Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
+ + ++I + P D G+Y + + + ++ +E+ +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 86.2 bits (213), Expect = 1e-22
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 15/118 (12%)
Query: 55 ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN----------RELS 99
+ F+ +P+ V+ + + + + PT+KW+KG
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 100 KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
K + M+II K +G Y+C T K D + + V + +
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 88.1 bits (218), Expect = 2e-22
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 28 TIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPP 86
T+ +++++ Q W P+F L V L C ++ K
Sbjct: 90 TVVLVGDVFKKLQKEAEFQRQEWIRK--QGPHFVEYLSWEVT-GECNVLLKCKVANIKKE 146
Query: 87 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ WYK RE+ D + DG+ ++ I + +D+G Y+ + + G D++ ++
Sbjct: 147 THIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Query: 147 ES 148
E+
Sbjct: 206 EA 207
Score = 87.3 bits (216), Expect = 4e-22
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 61 TFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSD--GVVSM 114
F +++ Q + V + +E+ Y M G++ M
Sbjct: 4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
+ + ED G Y + T+ + V++ + ++ +++ E
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 107
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 91.4 bits (226), Expect = 3e-22
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
AP T L + + ++ ++ C SG PPP + W+K N L + D + DG +
Sbjct: 663 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRN 721
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE--SKEQQELAHNF 162
+ I + ED G Y C A + G + I+E +E + E+ H+
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHHH 772
Score = 73.6 bits (180), Expect = 5e-16
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 53 TVESAPNFTFLLR-PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD 109
V P F +++ + ++ G PPP +KWYK L +
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH- 381
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ I++ D+G Y + TN ++ + VV +
Sbjct: 382 ---VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 62.9 bits (152), Expect = 3e-12
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG--VVS 113
P + ++ T ++ C G+ W +R SDG +
Sbjct: 30 DLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I D+G YKC V
Sbjct: 88 LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Score = 62.5 bits (151), Expect = 4e-12
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-------GNRELSKRDY 103
+ V + L C + + + +++L RD
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277
Query: 104 SMS----YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ ++ I D G Y C A++ T + + V V
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325
Score = 58.6 bits (141), Expect = 9e-11
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-------- 104
V P T + +++ L C + WYK +
Sbjct: 546 HVTRGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604
Query: 105 -------------MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ ++ ++ ME+ + +D G+Y C+A ++ V + E
Sbjct: 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664
Query: 152 SK 153
Sbjct: 665 VA 666
Score = 53.6 bits (128), Expect = 4e-09
Identities = 23/134 (17%), Positives = 33/134 (24%), Gaps = 38/134 (28%)
Query: 53 TVESAPNF---TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNREL---------- 98
V P + + Q T L C + PPP + WY E
Sbjct: 416 VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475
Query: 99 ------------------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
+K +++ ++ S YKC A NK
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535
Query: 135 HGTDETNCVVIVES 148
G E V
Sbjct: 536 VGRGERVISFHVTR 549
Score = 52.1 bits (124), Expect = 1e-08
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 73 QTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
+T + C S ++ + +S+ D I +G C A
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEA 202
Query: 132 TNKHGTDETNCVVIVESEEES 152
+ ++ ++V
Sbjct: 203 KINDESYQSIMYIVVVVGYRI 223
Score = 30.9 bits (69), Expect = 0.19
Identities = 3/35 (8%), Positives = 8/35 (22%), Gaps = 4/35 (11%)
Query: 121 PEDSGEYKCVATNKHGTDETNCV----VIVESEEE 151
+ CV T + + ++
Sbjct: 6 LLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDI 40
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 89.3 bits (221), Expect = 4e-22
Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 31 AYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTV 89
+ + ++ + + + P+F L V L C ++ K +
Sbjct: 196 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHI 254
Query: 90 KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
WYK RE+S + + DG+ ++ I + +D+G Y+ + + G D++ ++ E+
Sbjct: 255 VWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 87.4 bits (216), Expect = 2e-21
Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 3/119 (2%)
Query: 46 QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRD 102
+ E L +++ Q + V + +E+ K
Sbjct: 97 LLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYK 156
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHN 161
+ + G++ M + + ED G Y + T+ + V++ + ++ +++ E
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215
Score = 77.3 bits (190), Expect = 1e-17
Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 2/102 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
P ++ + C P W K + M
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
D +D G Y C T+ G + + E + E
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 87.6 bits (217), Expect = 4e-22
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 52 ETVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSM 105
+ AP +T + R+ V T K C G P PT++W K +E R
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
+ S+ + P D G Y CV N++G+ + V +
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
Score = 65.3 bits (159), Expect = 1e-13
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------------DYSM 105
L V + +C + P ++W K + + +S
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
S + + + D+GEY C +N G + + V ++++ +++
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 90.2 bits (224), Expect = 7e-22
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGV 111
V+ P F P L C L G PP V W+K REL Y + + +
Sbjct: 380 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
S+ I++ D GEY+C A+N G+D + +++
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 89.5 bits (222), Expect = 1e-21
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
P F L + + L C + G P + WYK + +L S Y M + + V S+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
I D GEY C A N G ++ V++++ +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL 100
Score = 89.5 bits (222), Expect = 1e-21
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDG 110
T+++ P F L V + +L + G P +V W+K E+ + + +SYS+
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ +++ +P ++G+Y C N+ GT E + V
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 87.9 bits (218), Expect = 4e-21
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 38 QVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE 97
V L I + + P+F L+ + C ++G P V WYK
Sbjct: 86 AVASSAVLVI----KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL 141
Query: 98 LS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
L + S+ V +++I+ G+Y C A+N GT ++ + + E
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
Score = 87.6 bits (217), Expect = 6e-21
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 53 TVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
V+ P F L P R+++ + + C + G P V WYK E+ + + MS+ +
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
V +E+ + EDSG+Y C A N G+ ++ + V+
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383
Score = 84.1 bits (208), Expect = 1e-19
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
E P F + + ++ C ++G P + W K NRE+ +Y M+ + +
Sbjct: 195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ ++ D+G+Y C A+N G D + + V+
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 83.5 bits (207), Expect = 8e-22
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
F L+ + L C LS P VKW GN L YS+ ++
Sbjct: 6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ + + +P+DSG Y C G T+ + V +
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 89.9 bits (223), Expect = 9e-22
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 15 QDNPRLRTRAIPKTIPA-----YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVM 69
+D+ + + A P+ +P +++ R +E + + E+ P F +
Sbjct: 435 RDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEV 494
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYK 128
Q+ C + PP V W+K +REL + Y Y+ + I K +D GEY
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 129 CVATNKHGTDETNCVVIV 146
A N +GT E + V
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 85.6 bits (212), Expect = 1e-21
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 56 SAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVV 112
S P + + + C SG P P + W++ + + + Y + S+
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT-- 58
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + + D G Y C ATNK G DE + V
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 73.3 bits (180), Expect = 7e-17
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--------NRELSKRDYS 104
V P+ L + L+C G+P P + W + +
Sbjct: 91 QVFVQPHIIQLKNETTYE-NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ G S+ I D K DSG Y C A ++ G + + + +E
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 87.9 bits (218), Expect = 1e-21
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSD-GVV 112
AP+F LR ++ + L+C ++G P P VKWY+ +E+ Y + G
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ I +D+ Y+ ATN+ G+ + VE
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 77.5 bits (191), Expect = 8e-18
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 53 TVESAPNFT---FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMS 106
VE L + + + SGKP P + W KG + + Y +
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 107 YSDGVVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S+ + + +D+G Y A N+ G D+ + V
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 81.2 bits (201), Expect = 6e-21
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
A FT L ++ + T C P TV W KG EL + + S +
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ I + DS Y C G ++ ++V+
Sbjct: 65 LTISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 85.4 bits (211), Expect = 1e-20
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 51 QETVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYS 104
AP +T + +++ V T + C +G P P++ W K RE R
Sbjct: 113 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
+ S+ + P D G Y CV NK G+ + V +
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 221
Score = 64.3 bits (156), Expect = 7e-13
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Query: 54 VESAPNFTFLLRPRVMQVR--QTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
P + + +L C G P W K L + G
Sbjct: 4 AAEVPGP-EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER---VLVG 59
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
+++++ EDSG Y C V + ++ ++
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDED 105
Score = 62.3 bits (151), Expect = 3e-12
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 17/117 (14%)
Query: 55 ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRE--------------L 98
P + C + P ++W K +
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277
Query: 99 SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKE 154
K + + + + + + ED+GEY C+A N G + ++V +EEE E
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 81.0 bits (200), Expect = 1e-20
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
TV P L P ++R + + G PPPT+ W + L SK + Y +G
Sbjct: 4 TVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
Query: 111 VVSM---EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+S ++G Y +A N GT
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 79.7 bits (197), Expect = 2e-20
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVS 113
L + + + +L C LS P V W K + + K + Y + +
Sbjct: 6 SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ I +D+GEY C T + VE
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKST----ASLHVE 94
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 79.8 bits (197), Expect = 3e-20
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY------SMSY 107
V AP TFL P + + G P P ++W+ L++ Y ++
Sbjct: 1 VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
++ +++ + ++G+Y +A N++G DE
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 79.7 bits (197), Expect = 3e-20
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
FT L+ + T L C LS V+W KG L YS+
Sbjct: 2 SSGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDG 59
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++I D D+GEY C+ G + T+ + V
Sbjct: 60 TRCELQIHDLSVADAGEYSCMC----GQERTSATLTVR 93
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 79.7 bits (196), Expect = 3e-20
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 58 PNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN----------RELSKRD 102
P F++RP+ +V + ++G PP VKW+KG
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
Y + + + I D +P +G Y+C + K D +N + V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 83.7 bits (207), Expect = 4e-20
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
ET E P F + ++ +C +G P P V W K +++ S+R ++ + +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 111 VVSMEIID--CKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE 154
++ I P D Y+CVA N G + + V E++
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS 106
Score = 76.0 bits (187), Expect = 3e-17
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
AP F+ L + + C G P P VKW +G +L+ D M V
Sbjct: 203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-MPVGRNV--- 258
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ +DS Y CVA + G E + V+S
Sbjct: 259 -LELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 74.5 bits (183), Expect = 1e-16
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 45 LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDY 103
L + + PN + +V++ +T +LC SG P P + W+K +
Sbjct: 96 LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155
Query: 104 SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
+++I + D G+Y+CVATN G +
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 83.3 bits (206), Expect = 6e-20
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
V P + + + C SG P P + W++ + + + Y + S+
Sbjct: 188 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
+ + + D G Y C ATNK G DE + V +
Sbjct: 248 T--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQHHHHHH 291
Score = 74.1 bits (182), Expect = 1e-16
Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+ F ++ P+ + + +++C +S P P V W N E++ +
Sbjct: 94 EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 153
Query: 113 SMEIIDCKPEDSGEYKCVATNK-HGTDETNCVVIV 146
+++I++ D G Y+C + G + ++++
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 67.1 bits (164), Expect = 4e-14
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVS 113
+ T L + V ++ C G+P WY E S + +
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I + ED+G Y+C AT+ G + VV+
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 78.9 bits (195), Expect = 6e-20
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVV 112
FT LR T L C LS P V+W+KG+ L +S+
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARC 73
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++I ED+GEY C+ G + T+ ++ V
Sbjct: 74 ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 82.3 bits (203), Expect = 6e-20
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 53 TVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMS 106
AP +T + +++ V T + C +G P P++ W K RE R +
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 66
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
S+ + P D G Y CV NK G+ + V +
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 113
Score = 64.6 bits (157), Expect = 2e-13
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-------------R 101
L + + + C + P ++W K +
Sbjct: 112 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
+ + V + + + D GEY C ATN G E + V ++E+
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 81.0 bits (200), Expect = 1e-19
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 45 LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
L I +T P T RV++V T + C G P P + W K ++ +
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR 157
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S DG ++I + + ED G+Y+CVA N GT+ + +
Sbjct: 158 YSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197
Score = 79.1 bits (195), Expect = 6e-19
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSD 109
ET P + + ++V C G PPP++ W K +++S Y++
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 110 GVVSMEIID--CKPEDSGEYKCVATNKHGTD-ETNCVVIVESEEESKEQ 155
G +S+ I+ D Y+CVA N G + + + +++
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG 109
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 80.2 bits (198), Expect = 1e-19
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSD 109
V P + + + C SG P P + W++ + + Y + S+
Sbjct: 92 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 151
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + + D G Y C ATNK G DE + V
Sbjct: 152 T--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 70.2 bits (172), Expect = 8e-16
Identities = 18/92 (19%), Positives = 39/92 (42%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
S F ++ P+ + + +++C +S P P V W N E++ + +++
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
I++ D G Y+C + + +IV
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 77.4 bits (191), Expect = 1e-19
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSM 114
S+ + + ++ +L C L ++ W + +L++ + ++ +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGE----EV 56
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
E+ D P DSG Y CV ++ G+D T V V S
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 79.4 bits (196), Expect = 3e-19
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
+ F ++ P+ + + +++C +S P P V W N E+ + ++
Sbjct: 92 EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 151
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+++I++ D G Y+C + + +IV
Sbjct: 152 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 77.9 bits (192), Expect = 1e-18
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSM 114
+ T L + V ++ C G+P + ++ S + + +
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
I + ED+G Y+C AT+ G + VV+
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 76.7 bits (189), Expect = 4e-19
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
+ ++ + C +S T KWYK E+ + ++S+
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
+ I D +PED G+Y V + + + + S
Sbjct: 63 HKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 78.6 bits (194), Expect = 5e-19
Identities = 21/95 (22%), Positives = 34/95 (35%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
E + AP T L V + +C + P P + W + + D S +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I+ + D G Y C A N G +C +
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ 96
Score = 78.2 bits (193), Expect = 9e-19
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
V+ P T + L C G P P+V W KG+ L + G
Sbjct: 96 QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG-- 153
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143
S+ I + + ED+G+Y+CVA N GT + V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 81.9 bits (202), Expect = 5e-19
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
TV + + + + + C +G P TV W K + + S+ V
Sbjct: 339 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESV- 390
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ I K ED G Y+C N + E + + + +
Sbjct: 391 -LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Score = 79.6 bits (196), Expect = 5e-18
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK------RDYSM 105
P + M+ + L C G P P + W ++++ Y
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
D V + I D G YKC+A +K G E + + V
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Score = 78.8 bits (194), Expect = 8e-18
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
V P + + K+ C G P P V W K + + SD +
Sbjct: 710 NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ + + + + G Y C A N G+ + ++I
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 78.4 bits (193), Expect = 1e-17
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 47 ITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
+ + + P L + + T LLC G P P +WYK +++
Sbjct: 236 LVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAV 295
Query: 105 MSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ ++ I D EDSG+Y CV N G + V+ V +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 342
Score = 73.8 bits (181), Expect = 5e-16
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 53 TVESAPNF-TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNREL--SKRDYSMSYS 108
V P F QV Q L C + G P + W + + +
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ I + +G + C A N G + + V
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV 713
Score = 66.1 bits (161), Expect = 2e-13
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 52 ETVESAPNFTFLLRPRV-MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
+ + P F R+ ++ C SG P P + W + + +
Sbjct: 33 DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92
Query: 111 VVSMEIIDCKPED------SGEYKCVATNKHGTDETNCVVIVESE 149
+ + ED + Y C+A N+ G+ + V +
Sbjct: 93 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137
Score = 64.6 bits (157), Expect = 7e-13
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
V P + + + +T + C ++G P ++ W + NR L + +G
Sbjct: 523 NVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG-- 579
Query: 113 SMEIID-CKPEDSGEYKCVATNKHG-TDETNCVVIVES 148
++ I + + D Y CVA N+ G + + V V
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 50.3 bits (120), Expect = 5e-08
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 11/96 (11%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCL---SGKPPPTVKWYKGNRELSKRDYSMS--- 106
A + + + + + C + V W+ E
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193
Query: 107 --YSDGVVSMEIIDCKPEDS-GEYKCVATNKHGTDE 139
G + I + PED Y+C ++ +
Sbjct: 194 LVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGET 227
Score = 38.8 bits (90), Expect = 4e-04
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
M + + + + + VA G+ ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK 37
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 76.2 bits (188), Expect = 6e-19
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGV 111
S T L + +L C +S VKW+K E+ K Y +
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ I D+ EY + T +++ + V+ +
Sbjct: 64 HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 75.5 bits (186), Expect = 2e-18
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG-VV 112
+ L +Q + C +S V W+ L + + G
Sbjct: 11 GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ + +DSG A G + + V +
Sbjct: 71 VLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 2e-18
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVS 113
S L + + + + L C +S P KW K + + + +
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHK 62
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ I + ED G+Y V V S
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 74.7 bits (184), Expect = 2e-18
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSM 114
P + + V T L C +G P P + W K RD + G ++
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TL 64
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+I + + D+G Y CVAT+ G + V+ V
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 74.7 bits (184), Expect = 2e-18
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 55 ESAPNFTFLLRPRVM-QVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
S F +L P + + L+ P VKWYK +E+ Y +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ I +C+ D EY A G ++ + + V S
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 79.9 bits (197), Expect = 2e-18
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+ + P++ ++ + + C SGKP P V+W + + L+ ++ + S G
Sbjct: 290 IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR-IEVSGG-- 346
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ EDSG Y+CVA NKHGT + + V++
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 68.7 bits (168), Expect = 2e-14
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 33 VPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVK 90
+ + + + Q++ E P Q L C G P P +K
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
W K + + + S+ + I + ED G Y+C A N G D +I+ +
Sbjct: 241 WRKLDGSQTSK---WLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293
Score = 57.9 bits (140), Expect = 1e-10
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYK 128
+ L C PP T +W EL D G + I + K +D+G Y+
Sbjct: 21 AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQ 78
Query: 129 CVATNKHGTDETNCVVIV 146
CVATN GT + +
Sbjct: 79 CVATNARGTVVSREASLR 96
Score = 48.7 bits (116), Expect = 2e-07
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYS---MS 106
F +++ C P + +W +S
Sbjct: 96 RFGFLQEF-SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS 154
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
+ G ++ I + D G Y C AT+ +
Sbjct: 155 QTTG--NLYIAKTEASDLGNYSCFATSHIDFITKS 187
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 79.9 bits (197), Expect = 2e-18
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
T + PN+ ++ + + ++ C +G+P PT +W K L RD + G
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-IQIEQG-- 347
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
++ I D+G Y+CVA NKHG ++ + V +E
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 73.7 bits (181), Expect = 3e-16
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 44 PLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR 101
PL + E P + P + T KL C G P PT+ W + + + R
Sbjct: 191 PLILRNDGVMGEYEPKI-EVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR 249
Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
S+G +EI + + ED+G Y+CVA N G + + +
Sbjct: 250 KARRHKSNG--ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294
Score = 60.2 bits (146), Expect = 2e-11
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 56 SAPNFTFLLRPRVMQV---RQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGV 111
S P F + + + KL C + G P P ++W ++ D+ S DG
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG- 62
Query: 112 VSMEIID-CKPEDSGEYKCVATNKHGTDETN 141
S+ I + K +D+G Y+C+ATN GT +
Sbjct: 63 -SLLINNPNKTQDAGTYQCIATNSFGTIVSR 92
Score = 52.1 bits (125), Expect = 1e-08
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCL-SGKPPPTVKWYKGNRELSKRD-YSMSYS 108
NF + VR Q LLC + W + + +S
Sbjct: 97 QFAYLENF-KTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE 155
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
G ++ I + D G Y CV TN +
Sbjct: 156 TG--NLYIAKVEKSDVGNYTCVVTNTVTNHK 184
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 74.3 bits (183), Expect = 3e-18
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSD 109
L + + V ++ +S + V W K EL++ D Y
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ D ED G Y+ + + +IVE ++
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 74.3 bits (183), Expect = 3e-18
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYS 108
+ + F L P QV +L L+ VKW K +E+ S Y
Sbjct: 11 DEKKSTAFQKKLEP-AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++ I C D Y+CV G ++ + + V+
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 76.0 bits (187), Expect = 4e-18
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL------SKRDYSMS 106
V++AP+ T R Q + C G P P W K + S + +
Sbjct: 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147
Query: 107 YSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVVIV 146
+ + I++ + ED GEY+C ATN G+ + V+ V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 61.0 bits (148), Expect = 3e-12
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDGVVS 113
+ P + L C L+ W K EL+ + S
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----E 57
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
I + EDSGEY CV + + N + V++
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 78.7 bits (194), Expect = 6e-18
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
TV P F + C +SGKP PTV W K + DY
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-- 365
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++ I+ D G Y+CVA N+ G +++ +IV
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 74.5 bits (183), Expect = 2e-16
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 53 TVESAPN----FTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSM 105
+ S P FL RP + + L CC+SG PPP+ W +G + R
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
++ I + +DSG Y CV T K+ + + V
Sbjct: 271 LLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311
Score = 72.9 bits (179), Expect = 7e-16
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY---SD 109
V F + T L C + G P PT+ W K ++L+
Sbjct: 117 MVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV-VIVESE 149
G +++I +P DSG Y+C A N T N V + S+
Sbjct: 177 G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215
Score = 58.3 bits (141), Expect = 9e-11
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNREL--SKRDYSMSYSD 109
+ +F V L C P +KW K L D +
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 110 G---VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
G + ++ D G Y+C A+ + V
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 74.3 bits (182), Expect = 7e-18
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK----------- 100
F + V + +L C G P P ++W+ + +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 101 ---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ + ++ I ED+G Y+C A+N + V
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 75.6 bits (186), Expect = 1e-17
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSY 107
+ AP P + + C + P T+ W++ + L + +
Sbjct: 15 SHMYAPKLQG---PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ +E+ D G Y C A N+ G + +++
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 72.9 bits (179), Expect = 1e-17
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMS-YSDGVVSM 114
P + + V T L C +G P PT+ W K +S +D + +G +
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VL 64
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+I K D+G Y C+A+ G + + V+
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 76.8 bits (189), Expect = 3e-17
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSD 109
+E AP F + C + PP ++ W + L ++ +
Sbjct: 96 DIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG 155
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ +EI D G Y C ATN GT ++ +
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Score = 73.3 bits (180), Expect = 4e-16
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 65 RPRVMQVR-------QTCKLLCCLSGKPPPTVKWYKGNREL--------SKRDYSMSYSD 109
+P ++Q++ L+C G+P P + W + +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
G S+ I D K DSG Y C A ++ G + + + +E
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 76.4 bits (188), Expect = 3e-17
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
V++AP + + ++ + +L+C +G P PTV+W L + + + +
Sbjct: 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD 367
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
++ D + Y+C +N+HG N V V
Sbjct: 368 --TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 75.3 bits (185), Expect = 9e-17
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 44 PLQITFWQETVESAPNFTFLLR-PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK 100
L++ + E P+F + V L C SG P P + WYK +L
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265
Query: 101 RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ ++ I + EDSGEY C+A+NK G+ V V++
Sbjct: 266 DKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311
Score = 65.3 bits (159), Expect = 3e-13
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 53 TVESAPNFTF-LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYS 108
+ P T + ++ R + C G P P+ W + +R + SM
Sbjct: 12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR 71
Query: 109 DG--VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
G V+ E GEY+C A NK GT +N + +
Sbjct: 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110
Score = 52.2 bits (125), Expect = 1e-08
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 53 TVESAPNF-TFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMS-YSD 109
V +P + L P V+Q L C G P P + W + E +D +S +
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170
Query: 110 GVVSMEIIDCKPEDS-GEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLY 164
G + + +D +Y C A ++ E +F+Y
Sbjct: 171 G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY 224
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 71.3 bits (175), Expect = 4e-17
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEI 116
R + + L C ++ V WYK ++LS + + +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
++GEY C A G + + + V +
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 74.2 bits (182), Expect = 4e-17
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNREL----------SKR 101
V P+ + P + L C G PP W+K + S
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
Y ++ + G + D+GEY C A N +GT T+ V +E+ E
Sbjct: 163 SYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 61.1 bits (148), Expect = 3e-12
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 58 PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYSDG 110
+ T +++ KL C SG P V+W + + + SY D
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 111 VV----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
V + ED+G Y C+ + + G V +
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 75.7 bits (186), Expect = 7e-17
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR-QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
TV SAP + ++ + Q + C ++G P P V W + LS +++ S
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS--- 360
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I K D G Y C ATN+HG +V V
Sbjct: 361 -GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 71.5 bits (175), Expect = 2e-15
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGV 111
V+ P + + L C + G W K + + ++++ +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S+ + + D G Y+C A G + +
Sbjct: 62 GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 96
Score = 71.1 bits (174), Expect = 2e-15
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSD 109
+ P ++ + + + + C P ++K +++ + +
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT 267
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVES 148
+ PED G Y C N G + + + V S
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307
Score = 53.0 bits (127), Expect = 5e-09
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 9/103 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
+ + +L C L + P P + W K + +
Sbjct: 96 RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155
Query: 112 VSME--------IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + D +Y C A N +E V
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE 198
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 70.9 bits (174), Expect = 7e-17
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 56 SAPNFTFLLRPRVMQVR--QTCKLLCCLS-GKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
S+ + R + M+V ++C C LS W G + + S + +
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK 64
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGT 137
+ + + P D+GE
Sbjct: 65 YILVVREAAPSDAGEVVFSVRGLTSK 90
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 73.4 bits (180), Expect = 9e-17
Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 8/109 (7%)
Query: 38 QVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE 97
V ES + + T L C G P P +W+K
Sbjct: 99 DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP 158
Query: 98 LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
L+ + E G Y C N + ++ V I+
Sbjct: 159 LTHETKK--------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 68.4 bits (167), Expect = 6e-15
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
V T + P V Q KL C +G P +W+K N+E+ + S
Sbjct: 14 LVPRGSKIT--VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------ 65
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ +D+G Y C N + + +
Sbjct: 66 --ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL 98
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 70.1 bits (172), Expect = 1e-16
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
+ + F+ R + V+W +G ++S Y ++
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEG 60
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++ + + P D G Y +A G+ + + V
Sbjct: 61 TRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 72.2 bits (177), Expect = 2e-16
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 44 PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY 103
PL + T + + + Q L C G P P ++W K +
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE 159
Query: 104 SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+S S ++I + + ED G Y+C A N G D+ + V++
Sbjct: 160 -ISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 53.7 bits (129), Expect = 1e-09
Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSK---RDYSMSYSDGVV 112
P ++ + LLC P + +W + + +S ++G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYS 165
++ I + + D G Y C ++ T I + + + +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 73.9 bits (181), Expect = 3e-16
Identities = 14/92 (15%), Positives = 31/92 (33%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
+ + + V + L + + W + L+ + + + GVVSM I
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVI 107
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ +GEY ++ V + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Score = 70.1 bits (171), Expect = 7e-15
Identities = 12/98 (12%), Positives = 19/98 (19%), Gaps = 5/98 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
T+ ++ Q P W + D
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC---EQKGLDN 376
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
S+ GEY A N + + S
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 67.8 bits (165), Expect = 4e-14
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDG- 110
T++ L ++V + + C + + W N+ L + +Y +
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 111 ------VVSMEIIDCKPEDSGEYKCVATNKHGT 137
++ + D+G Y C ++
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 62.0 bits (150), Expect = 5e-12
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
++ + +T L RP ++ L+C P P V+W + + S VV
Sbjct: 136 SIRNTLLYT-LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVV 191
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
E + +C A N+ G + T I ++ +L
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQL 237
Score = 25.8 bits (56), Expect = 8.1
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
+++ + D S Y V+ +
Sbjct: 10 IKCVLINHKNNDSSVGKSSSYPMVSESPEDLG 41
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 69.4 bits (170), Expect = 3e-16
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSM 114
S + + L C L +P V+W K E+ + + D V +
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + EDSGEY C + + V V
Sbjct: 71 VLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 68.7 bits (168), Expect = 3e-16
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEI 116
+ ++ +L C L ++ W + +L + + ++ +E+
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE----EVEV 64
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
D P DSG Y CV ++ G+D T V V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 68.6 bits (168), Expect = 6e-16
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 55 ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
+ + + L C LS WYK +++ +
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRK 64
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + + K +DSGE++C V V+
Sbjct: 65 HRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 70.2 bits (172), Expect = 1e-15
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
+ F P+ + + ++C + PPT+ W R++ K + S+
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++I K D G Y+C + + V
Sbjct: 156 --YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 63.3 bits (154), Expect = 4e-13
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 61 TFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNREL----SKRDYSMSYSDGVVS 113
+ P ++ ++ LC ++G + W+ N E +R + D +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I + +D+G YKCV T + GT V +
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 71.8 bits (176), Expect = 1e-15
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSY 107
V P Q+ L+C G P PT+ W K + + D +
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
SD + I + D EY C+A NK G + + + V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 66.8 bits (163), Expect = 5e-14
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
+ F P + + + ++C + PPT+ W R++ +
Sbjct: 96 KIFQKL--MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++I K D G Y+C + + V
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 56.4 bits (136), Expect = 3e-10
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNREL----SKRDYSMSYSDGVV 112
+ + V ++ LC ++G + W+ N E +R + D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ I + +D+G YKCV T + GT V +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 69.0 bits (168), Expect = 1e-15
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 32/113 (28%)
Query: 66 PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD--------------------- 102
P + V +L +SG P PTV W K + +K
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 103 ---------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + + + ED G Y N G D+ N V V
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 72.4 bits (177), Expect = 1e-15
Identities = 14/92 (15%), Positives = 31/92 (33%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
+ + + V + L + + W + L+ + + + GVVSM I
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVI 107
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ +GEY ++ V + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Score = 69.7 bits (170), Expect = 1e-14
Identities = 10/98 (10%), Positives = 19/98 (19%), Gaps = 5/98 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
T+ ++ + P W + + D
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL---DN 376
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
S+ GEY A N + +
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR 414
Score = 62.4 bits (151), Expect = 3e-12
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
++ + + L RP ++ L+C P P V+W + + S VV
Sbjct: 136 SIRNTLLY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVV 191
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
E + +C A N+ G + T I
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTID 225
Score = 60.5 bits (146), Expect = 1e-11
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS------------KRDYSMSYSDGVV 112
+P+V+ + C G P P+ W K + + ++ + V
Sbjct: 415 KPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNF 162
S + + KC A N GT ++ + H+
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524
Score = 58.2 bits (140), Expect = 1e-10
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSK-RDYSMSYSDG 110
T++ L ++V + + C + W N+ L + + MS
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 111 VVSME------IIDCKPEDSGEYKCVATNKHGT 137
+M + D+G Y C ++
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 67.1 bits (164), Expect = 2e-15
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCC-LSGKPPPTVKWYK-GNRELSKRDYSMSYS 108
S P + R VR +C S P T+ W + N +L R
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDF 60
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+G + I + +P D+G Y C +N D+ + V+
Sbjct: 61 NG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 69.1 bits (169), Expect = 2e-15
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 62 FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEI 116
+ P + V Q KL C + G P ++W K + D +S + + +
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCV-VIVES 148
+ D+G Y C + T+ + V + VE
Sbjct: 65 KSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 67.5 bits (165), Expect = 7e-15
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGV 111
TVE P FT + + +L C G P P T+ W++G ++ S S
Sbjct: 94 TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV---- 149
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S + C A N G + +
Sbjct: 150 ----LNVTGVTQSTMFSCEAHNLKGLASSRTATVH 180
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 67.7 bits (165), Expect = 2e-15
Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--------SMSYSD 109
P L +++ C + + G+P P+++W L++ + + + +
Sbjct: 4 PASVQLHTA--VEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + ++G Y +A N G + +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 71.3 bits (174), Expect = 2e-15
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 53 TVESAPNF--TFLLRPRVMQVRQTCKLLC-----CLSGKPPPTVKWYKGNRELSKRDYSM 105
V + F+ P+++ + + L+C K ++WYK + L K +
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
G + + D ED+G Y+CV T H + N +E
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Score = 69.3 bits (169), Expect = 9e-15
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCL-------SGKPPPTVKWYKGNREL---SKR 101
S + + L C S P + W+K + +
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
+ M DG ++ ++ EDSG Y C N D+ + + V ++
Sbjct: 73 ETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125
Score = 52.0 bits (124), Expect = 1e-08
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 18/121 (14%)
Query: 42 REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC---CLSGKPPPTVKWYKGNREL 98
+++ ++ E+ P L+ + + C +G P T+ W+ N
Sbjct: 211 TRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTH 270
Query: 99 SKRDY--------------SMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCV 143
+ Y + + V + ED ++KCV N
Sbjct: 271 IESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTT 330
Query: 144 V 144
V
Sbjct: 331 V 331
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 69.6 bits (170), Expect = 2e-15
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
TV P+ + P + + L C G PP W+K + D + +
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 112 VSME---------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
S DSGEY C A N +GT + +++ E
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 58.1 bits (140), Expect = 4e-11
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 61 TFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK-----RDYSMSYSDGVV- 112
+ +QV ++ KL C SG P V+W + + Y+D V
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 113 ---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ +D+GEY C+ + + G + + +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 66.6 bits (163), Expect = 3e-15
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEI 116
L + V +T LS +P +W + L + D + + +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+C+ +GE A N ++ + V+
Sbjct: 65 HNCQLGMTGEVSFQAAN----TKSAANLKVK 91
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 69.1 bits (169), Expect = 4e-15
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
+P V++ + L C + GKP PT++W+K +S + + + + DG
Sbjct: 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 111 VVSME--IIDCKPEDSGEYKCVATNKHGT 137
+ + K +D GEY CVA N+ G
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Score = 63.7 bits (155), Expect = 4e-13
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVV- 112
+F + + +T L C G P PT+ W K L + V
Sbjct: 106 VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 113 -----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ I + +P D G YKC+A N GT E++ ++
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 70.2 bits (171), Expect = 4e-15
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
+ P+ + L C L K + WYK N+EL S S
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ- 182
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ I + + EDSG Y C + + VV
Sbjct: 183 -NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216
Score = 48.7 bits (115), Expect = 2e-07
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 54 VESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP----PPTVKWYKGNRELSKRDYSM-- 105
+ S + L+ + V + + C + W + + D+ +
Sbjct: 223 IPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYS 282
Query: 106 ----SYSDGVVSMEIIDCKPEDSGE-YKCVATNKHGTDETNCVVIVE 147
S ++ + E G Y C N + V++E
Sbjct: 283 ILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE-YKCVATNKH 135
LL V W K + R + +G + I + DS Y C T K+
Sbjct: 58 LLSHRYNDKDNVVNWEKIGKTR--RPLNRRVKNG--DLWIANYTSNDSHRRYLCTVTTKN 113
Query: 136 GTDETNCVVIV 146
G V
Sbjct: 114 GDCVQGIVRSH 124
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 70.7 bits (173), Expect = 4e-15
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
TV + + + + + C +G P TV W K + + S+
Sbjct: 303 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SES-- 353
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I K ED G Y+C N + E + + +
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 68.8 bits (168), Expect = 2e-14
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
Query: 31 AYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPT 88
+ R E + S+ T L + +++ T LLC G P P+
Sbjct: 184 TKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPS 243
Query: 89 VKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+WYK +++ + ++ I D EDSG+Y CV N G + V+
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303
Query: 146 VES 148
V +
Sbjct: 304 VTA 306
Score = 56.5 bits (136), Expect = 4e-10
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 55 ESAPNFTFLLRPRV-MQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG- 110
+ P F R+ ++ C SG P P + W + + SDG
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 111 --VVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIV 146
D + + Y C+A N+ G+ + V +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 99
Score = 45.3 bits (107), Expect = 3e-06
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCL---SGKPPPTVKWYKGNRELSKRDYSMSYSD 109
A + + + + + C + V W+ E + + D
Sbjct: 99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN---YFPGAEYD 155
Query: 110 GVVSM------EIIDCKPEDS-GEYKCVATNKHG 136
G + I + PED Y+C ++
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 189
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 64.7 bits (158), Expect = 1e-14
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 56 SAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
S + P ++ T L C G P P +W+K L+
Sbjct: 2 SKLQIC--VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------L 51
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
+ E G Y C N + ++ V I+ E +
Sbjct: 52 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 64.7 bits (158), Expect = 2e-14
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+ + T L C + +P P + W K L
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP------LPPSP-- 57
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
+ + + P+D G Y CVAT+ + + V + E
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 66.8 bits (163), Expect = 2e-14
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYS 108
+ P ++ + L C G+P PT++WYKG + R + M
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 109 DGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
G + + D G Y CVA N G ++ + +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
Score = 66.0 bits (161), Expect = 4e-14
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
+F ++ V + + C G P PT+ W K L +D ++ G +
Sbjct: 110 LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG--KL 167
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETN 141
I + D+G+Y CV TN G E+
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESE 194
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 64.8 bits (158), Expect = 2e-14
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYS 108
+ P ++ + L C G+P PT++WYKG + R + M
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 109 DG---VVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEESKEQQ 156
G + + D G Y CVA N G + + + V +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHHH 117
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 64.5 bits (157), Expect = 3e-14
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPP-TVKWYKGNREL---SKRDYSMS 106
TV P + + + ++ C + PPP + W L + Y++
Sbjct: 10 TVNGPPIIS---STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 66
Query: 107 ---YSDGVVS-MEIIDCKPED-SGEYKCVATNKHGTDETNCVVIVESEEES 152
+GV+S + I + D Y C A N G+D + + E S
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 66.9 bits (163), Expect = 1e-13
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 10/98 (10%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
+ + T + L C + PP W
Sbjct: 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ--------HTQ--E 427
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
+ I + ++SG Y C A N V + E
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465
Score = 63.8 bits (155), Expect = 1e-12
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKL-LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
TV + P F+ V + L C T W+ N+ L + S+
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSP-RLQLSNDN 341
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE 167
++ ++ D G Y+C N+ D ++ V++ ++ + G
Sbjct: 342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Score = 60.4 bits (146), Expect = 2e-11
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
C T W+ + L +S + ++ + + D+ Y C N
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVS 544
Query: 137 TDETNCV 143
+ ++ V
Sbjct: 545 ANRSDPV 551
Score = 58.8 bits (142), Expect = 7e-11
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
V P+ T ++ P L C + P P W
Sbjct: 554 DVLYGPD-TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ--------HTQ 604
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ I P ++G Y C +N + V +
Sbjct: 605 --VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 56.5 bits (136), Expect = 4e-10
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 53 TVESAPNF-TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
V P+ T + + L C + PP W+ S
Sbjct: 198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ--------STQ- 248
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ I + +SG Y C A N V +
Sbjct: 249 -ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Score = 55.3 bits (133), Expect = 1e-09
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
+ E + ++ + C T W+ N+ L + S+G
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPV-SPRLQLSNG 162
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
++ + + D+ YKC N ++ V++
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL 197
Score = 52.3 bits (125), Expect = 1e-08
Identities = 16/98 (16%), Positives = 22/98 (22%), Gaps = 17/98 (17%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-----------------SME 115
+ LL + WYKG R R S+
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
I + D+G Y +E E K
Sbjct: 75 IQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPK 112
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.9 bits (152), Expect = 1e-13
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 55 ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN-RELSKRD------ 102
P FL +P + V + ++ ++GK PT+KW+KG EL +
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 103 ---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++ + + V + I D G Y+ K D + VE
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 63.5 bits (154), Expect = 3e-13
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNREL-------SKRDYS 104
+ P + + +T L+C PP T WYK S+ +
Sbjct: 79 QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 138
Query: 105 MSYSDGVVSMEIIDCKPE-DSGEYKCVATNKHGTDETNCVVIVES 148
+S S G + I + E D G+Y+C T+ G+D+ + V S
Sbjct: 139 VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 52.7 bits (126), Expect = 3e-09
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 73 QTCKLLCCLSGKPPPTV--KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
L C L+ +W KG L + E + GEY CV
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ------KTEFKVDSDDQWGEYSCV 67
Query: 131 ATNKHGTDET 140
+
Sbjct: 68 FLPEPMGTAN 77
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 63.9 bits (155), Expect = 3e-13
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYK-GNRELSKRDYSMSYSDG 110
TV P+ T ++ KL C G P +W K + + + +
Sbjct: 117 TVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
V+S + + E SG Y C N+ G+D+ + V
Sbjct: 177 VIS--VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 42.7 bits (100), Expect = 1e-05
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 29/103 (28%)
Query: 73 QTCKLLCCLSGKP----PPTVKWYKGNRELSKRDYSMSYSD------------------- 109
+T L C + P P ++W + D +
Sbjct: 16 ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75
Query: 110 ------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
G S+ + + + D G Y+C G ++ V
Sbjct: 76 SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 65.1 bits (158), Expect = 4e-13
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 10/106 (9%)
Query: 53 TVESAPNFT-FLLRPRVMQVR--QTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYS 108
V F + + V + L+ P P +W NR + + S
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365
Query: 109 DGVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ ++ + K + G Y + +N V V +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411
Score = 63.9 bits (155), Expect = 1e-12
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSD 109
+ ++ P + +++ + + C + W + N + ++ S+
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264
Query: 110 GVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
G + E I + DSG + C A N G+ + V
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 62.4 bits (151), Expect = 3e-12
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 19/109 (17%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK------------ 100
V + P L R++ L C +G P PT+ WY +
Sbjct: 408 YVNTKP--EILTYDRLVNGM----LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQT 461
Query: 101 -RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ VV I + +G +C A N G +
Sbjct: 462 LNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 49.7 bits (118), Expect = 9e-08
Identities = 7/93 (7%), Positives = 19/93 (20%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
V + R + + C L+ + +D
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
M + C + + + ++
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL 202
Score = 42.7 bits (100), Expect = 2e-05
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
S P+ +++V +LLC P VKW + + + +
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEILDETNENKQNEWI---- 83
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGT 137
+ ++G+Y C +
Sbjct: 84 ---TEKAEATNTGKYTCTNKHGLSN 105
Score = 26.6 bits (58), Expect = 4.7
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 122 EDSGEYKCV----ATNKHGTDETNCVVIVES 148
+ ++ CV + G+ + + S
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS 35
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 63.0 bits (153), Expect = 1e-12
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
P V + +++C + K + + + D
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239
Query: 111 VV----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ + +D+G Y CVA+N GT V
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 53.8 bits (129), Expect = 2e-09
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSD 109
V+ + + L + + V Q L C ++ +V + R +S
Sbjct: 84 YVKDPAHS-WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
I K DS Y C + + +
Sbjct: 143 WR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
Score = 49.2 bits (117), Expect = 9e-08
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
V++ +T L C +G +V+W D S ++ + +++G Y
Sbjct: 15 VVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGS----TLTTRNATFKNTGTY 66
Query: 128 KCVATNKHGTDETNCVVIV 146
+C T + V
Sbjct: 67 RCTELEDPMAGSTTIHLYV 85
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 63.1 bits (153), Expect = 1e-12
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN----RELSKRDYSMS 106
Q+ + P T + V + +++C S + + N + D+ +
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
V+++ + + +G Y CVA+N G T+ V
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 51.1 bits (122), Expect = 2e-08
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSD 109
V+ + + + + V Q L C L+ V + R + S+S
Sbjct: 84 YVKDPARP-WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP 142
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
I K S +Y+C A + + +
Sbjct: 143 WH-GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177
Score = 46.5 bits (110), Expect = 7e-07
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
S P + V++ T L C +G +V+W S S +
Sbjct: 2 GSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSS----IL 53
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ +++G Y+C + V+
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK 86
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 60.4 bits (146), Expect = 4e-12
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
Q+ L P+V+ + + ++S + + +DSG + C
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVL 163
Query: 133 NKHGTDETNCVVIV 146
E ++V
Sbjct: 164 QNQKKVEFKIDIVV 177
Score = 50.7 bits (121), Expect = 1e-08
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL------------------SKRDYSMSYSDGVVSM 114
T +L C S K W N+ + G +
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
I + K EDS Y C ++ + + +
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 60.8 bits (147), Expect = 7e-12
Identities = 20/101 (19%), Positives = 26/101 (25%), Gaps = 16/101 (15%)
Query: 51 QETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSY 107
+ V P P +C G P P +K K G L
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------- 228
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
E + + G Y C A + G V V S
Sbjct: 229 -----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 44.3 bits (104), Expect = 4e-06
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 66 PRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
PRV++V ++C L G P V G++ L+ + S + + + E
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
+ C + + ET V + S
Sbjct: 72 GTQRLTCAVILGNQSQETLQTVTIYS 97
Score = 33.9 bits (77), Expect = 0.014
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 11/84 (13%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
T+ S P +L + + C P V +
Sbjct: 94 TIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPL---------GPRA 142
Query: 113 SMEIIDCKPEDSGEYKCVATNKHG 136
+ + ++ + C AT +
Sbjct: 143 QLLLKATPEDNGRSFSCSATLEVA 166
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 59.1 bits (143), Expect = 1e-11
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 7/95 (7%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGV 111
+E P F R + L C G P P + W + L+
Sbjct: 102 GLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR--- 158
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + + C A N G + I
Sbjct: 159 ---SLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 55.7 bits (134), Expect = 2e-10
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 61 TFLLRPRVMQVR--QTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV----- 112
F+ P + T L C PP V W + + L D + +
Sbjct: 4 PFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 113 -----SMEIIDCKPEDSGEYKCVATNKHGTDET 140
+ I + D+G+Y+C+ H T +
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS 96
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 59.3 bits (143), Expect = 1e-11
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 5/102 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS----MSYS 108
+V + + C ++ P P V+W + M
Sbjct: 100 SVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK 159
Query: 109 DGVVSMEII-DCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
DG +S+ + CV N V S+
Sbjct: 160 DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201
Score = 43.9 bits (103), Expect = 4e-06
Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 18/86 (20%)
Query: 81 LSGKPPPTVKWYKGNRELSK------------------RDYSMSYSDGVVSMEIIDCKPE 122
+S P V W+K + + + S + +
Sbjct: 18 VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 77
Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
G Y C + V
Sbjct: 78 HDGNYLCRMKLGETEVTKQEHLSVVK 103
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.8 bits (144), Expect = 2e-11
Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
+V+ +F ++ + + G+P P+++W L++ + +
Sbjct: 242 SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301
Query: 113 --------SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ + ++G Y +A N G + +
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 59.8 bits (144), Expect = 3e-11
Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 7/150 (4%)
Query: 4 RVFEPRSLRYP--QDNPRL---RTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAP 58
+ + SL+ NP R + + + V + + + Q S
Sbjct: 98 KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCG 157
Query: 59 NFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
T ++ V L C + G+ W E S +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ C A N G E + V V
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 59.4 bits (143), Expect = 3e-11
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 57 APNFTFLLRPRVMQVR-QTCKLLCC--LSGKPPPTVKWYKGNREL---SKRDYSMSYSDG 110
A ++ + C + T+ WYK + + +++ +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
+ + K EDSG Y CV N E +
Sbjct: 63 --KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNA 107
Score = 58.2 bits (140), Expect = 7e-11
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 54 VESAPNFTFLLRPRVMQ---VRQTCKLLC------CLSGKPPPTVKWYKGNRELSKRDYS 104
VE+ PN + + Q V L+C P ++WYK + L +
Sbjct: 97 VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
S + +++ + G Y C A+ + + ++E
Sbjct: 157 FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Score = 52.0 bits (124), Expect = 1e-08
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDY-------------SMSYSDGVVSMEIIDCKPED 123
L+C ++G+ W + + D + S + + I + +
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288
Query: 124 -SGEYKCVATNKHGTDETNCVVIV 146
+ C A N HG D +I
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 59.0 bits (142), Expect = 4e-11
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
V + P T ++ + C G+PP + W+ + + G
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
Query: 112 VSME----IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
V++ ++ D C ++ V +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212
Score = 56.6 bits (136), Expect = 3e-10
Identities = 14/82 (17%), Positives = 18/82 (21%), Gaps = 6/82 (7%)
Query: 66 PRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
+ L C P PT W L + I +
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVAQGA--QLLIRPVDKPIN 280
Query: 125 GEYKCVATNKHGTDETNCVVIV 146
C TN G + V V
Sbjct: 281 TTLICNVTNALGARQAELTVQV 302
Score = 35.8 bits (82), Expect = 0.004
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 25/99 (25%)
Query: 73 QTCKLLCCLSGKPPPT-----VKWYKGNRELSKRDYSMSY-------------------S 108
+ L C L + W + S + +
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 109 DGVVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 146
S+ + + ED G Y C T G+ + + V
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 58.2 bits (140), Expect = 7e-11
Identities = 23/97 (23%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 53 TVESAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDG 110
V+ P T R KL C PP T W N L K +
Sbjct: 227 NVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG----VEAQN 282
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+G Y C ATN GT V +
Sbjct: 283 RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 47.4 bits (112), Expect = 5e-07
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTC-----KLLCCLS-GKPPPTVKWYKGNRELSKRDYSMS 106
TV + P V++ ++ C + GKPP V W + ++ +
Sbjct: 126 TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN 185
Query: 107 YSDGVVSM---EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ V + ++ + C+ + + + V
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228
Score = 31.3 bits (70), Expect = 0.14
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 24/94 (25%)
Query: 77 LLCCLSGKPPP----TVKWYKGNRELSKRDYSMSYSDGVV-------------------S 113
L C + P V W K + + S GV +
Sbjct: 34 LHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93
Query: 114 MEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 146
+ + + ED G Y C AT G E+ + V
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 57.2 bits (137), Expect = 8e-11
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHG 136
L C P + W ++ + + + + + + E SG Y C
Sbjct: 133 LTC-PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKP 191
Query: 137 TDET 140
D
Sbjct: 192 EDAN 195
Score = 44.1 bits (103), Expect = 3e-06
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
LL C + W+K + + ++ + + G Y+C +
Sbjct: 22 LLTC--DAEAKNITWFKDGKMIG------FLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73
Query: 137 TDETNCVVIVESEEESKE 154
+ +++ K+
Sbjct: 74 KPLQVYYRMGSADDAKKD 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 57.5 bits (139), Expect = 1e-10
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
T + C + V N ++ + + S S + + ED G Y C A
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAM 321
Query: 133 NKHGTDETNCVVIV 146
+ + + + V
Sbjct: 322 GETFNETLSVELKV 335
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 57.6 bits (138), Expect = 2e-10
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 20/103 (19%)
Query: 51 QETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS 108
+ V P P +C G P P +K K
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--------------- 406
Query: 109 DGVVSMEIIDC---KPEDSGEYKCVATNKHGTDETNCVVIVES 148
DG + I + + G Y C A + G V V S
Sbjct: 407 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 44.5 bits (104), Expect = 4e-06
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 48 TFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYS 104
+ +T L+ PRV++V ++C L G P V G++ L+
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--V 236
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYK--CVATNKHGTDETNCVVIVES 148
+D + + ED G + C + + ET V + S
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 44.1 bits (103), Expect = 6e-06
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Query: 53 TVESAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYS 108
TV P L P V + L C + G P TV +G +EL +
Sbjct: 81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--E 138
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
V+ ++ + + C +
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Score = 38.7 bits (89), Expect = 4e-04
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 11/95 (11%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
T+ S P +L + + C + T+ +
Sbjct: 279 TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-----------A 327
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+ + ++ + C AT + + E
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
Score = 32.1 bits (72), Expect = 0.067
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 64 LRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP 121
+ P + + + + C S P + L K++ + + E+ +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELLLP-GNNRKVYELSN--V 57
Query: 122 EDSGEYKCVATNKHGTDETNCVVIV 146
++ + C + G + V
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTV 82
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 56.3 bits (135), Expect = 3e-10
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSD 109
+E +++ P + +++ T ++C + W K N + S
Sbjct: 182 REAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW 241
Query: 110 GVV--------SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ I + +DSG + C A N G+ + V
Sbjct: 242 HRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 49.0 bits (116), Expect = 1e-07
Identities = 7/93 (7%), Positives = 21/93 (22%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
V + P + + C L+ + + + D + +
Sbjct: 87 FVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ +C A ++ +
Sbjct: 147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179
Score = 38.6 bits (89), Expect = 5e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 10/82 (12%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
S P+ +++ T L C P V+W + +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTC----IDPDFVRWTFKTYFNEMVENKKN------EWI 60
Query: 116 IIDCKPEDSGEYKCVATNKHGT 137
+ +G Y C +N +
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTS 82
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 56.2 bits (135), Expect = 3e-10
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-----SKRDYSMSY 107
S+ N + V++ + L+C + G +W +E D+ +
Sbjct: 177 LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDM 236
Query: 108 SDGVVS-MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S + I + EDSG Y C T + + +
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 46.2 bits (109), Expect = 1e-06
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
V+ V T L C V W + ++E + + + + D+GEY
Sbjct: 11 VLNVSSTFVLTC----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 128 KCVATNKHGTDETNCVVI 145
C + G + +
Sbjct: 67 FCTHNDSRGLETDERKRL 84
Score = 43.9 bits (103), Expect = 6e-06
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 8/67 (11%)
Query: 80 CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
C P V ++ +++ + G + Y C T +
Sbjct: 117 CRVTDPQLVVTLHEKKGDVALP-VPYDHQRGFS-------GIFEDRSYICKTTIGDREVD 168
Query: 140 TNCVVIV 146
++ +
Sbjct: 169 SDAYYVY 175
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 56.0 bits (134), Expect = 4e-10
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 76 KLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME-----IIDCKPEDSGEYKC 129
K + T+ WY + + + +S E D+G Y C
Sbjct: 37 KFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTC 96
Query: 130 VATNKHGTDETNCVVIVESEEES 152
+ N + + V ++
Sbjct: 97 MLRNTTYCSKVAFPLEVVQKDSC 119
Score = 53.7 bits (128), Expect = 3e-09
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 21/135 (15%)
Query: 25 IPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK 84
+ +T+ V + + E P L+ C +
Sbjct: 207 LTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI---------PCTVYFSFLMD 257
Query: 85 PPPTVKWYKGNRELSKRDYSMSYSDGV-----------VSMEIIDCKPED-SGEYKCVAT 132
V W ++ ++ ++ + + I ED Y C A
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 133 NKHGTDETNCVVIVE 147
+ G V +
Sbjct: 318 SAKGEVAKAAKVKQK 332
Score = 53.3 bits (127), Expect = 4e-09
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 74 TCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
TC + PT+ WY G ++ + + ++ + ++G Y CV T
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM---NLSFLIALISNNGNYTCVVT 197
Query: 133 NKHG 136
Sbjct: 198 YPEN 201
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.5 bits (134), Expect = 8e-10
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
T + +C G PPP + W + L + DG ++E+ + +D+G Y C
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLC 458
Query: 130 VATNKHGTDETNCVVIVES 148
+A N G D + V S
Sbjct: 459 IAANAGGNDSMPAHLHVRS 477
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 55.2 bits (132), Expect = 1e-09
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
Q+ L P+V+ + + ++S + + +DSG + C
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVL 162
Query: 133 NKHGTDETNCVVIVES 148
E ++V +
Sbjct: 163 QNQKKVEFKIDIVVLA 178
Score = 49.4 bits (117), Expect = 1e-07
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL------------------SKRDYSMSYSDGVVSM 114
T +L C S K W N+ + G +
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
I + K EDS Y C ++ + + +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 103
Score = 44.0 bits (103), Expect = 6e-06
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 5/109 (4%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--- 108
E VE + F + + S K T + +
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGK 251
Query: 109 --DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
+++ + SG K G ++V + ++
Sbjct: 252 KLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300
Score = 37.5 bits (86), Expect = 0.001
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 68 VMQV-RQTCKLLCCLSGKPPPTVK--WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
VM+ + L C + G P + N+E + + ++
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR----------EKAVWVLNPEA 340
Query: 125 GEYKCVATNKHGT 137
G ++C+ ++
Sbjct: 341 GMWQCLLSDSGQV 353
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 53.7 bits (129), Expect = 1e-09
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 59 NFTFLLRPRVMQVRQTCK---LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
+ R ++ TC L C + P + Y+ + L +
Sbjct: 99 DLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ----------RVI 148
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
S ++KC A NK + + V V E+
Sbjct: 149 THKWTTSLSAKFKCTAGNKVS--KESSVEPVSCPEK 182
Score = 46.0 bits (109), Expect = 8e-07
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 83 GKPPPTVKWYKGNRELS----KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVAT 132
+KW K + + +++ +++I K +D YK
Sbjct: 27 SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86
Query: 133 NKHGTDETNCVVIVE 147
+ G + + ++
Sbjct: 87 DTKGKNVLEKIFDLK 101
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 53.8 bits (128), Expect = 2e-09
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 24/123 (19%)
Query: 48 TFWQETVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWYKGNREL------- 98
+ T + N + V+QV + + C + V WY G
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184
Query: 99 -------SKRDYSMSYSD--------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143
++ + S+ G ++ I K D+G C G + +
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
Query: 144 VIV 146
+
Sbjct: 245 STI 247
Score = 39.1 bits (90), Expect = 2e-04
Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 33/101 (32%)
Query: 73 QTCKLLC---CLSGKPPPTVKWYKGNRELSKRDYSMSY---------------------- 107
T +L C + PP + W KG
Sbjct: 18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77
Query: 108 --------SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
+ ++ + P+D G Y C E
Sbjct: 78 FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF 118
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 53.0 bits (127), Expect = 5e-09
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 14/117 (11%)
Query: 32 YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVK 90
Y + R +P+Q+ + RV + L C K V
Sbjct: 63 YRCQRGLSGRSDPIQLEI------HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVL 116
Query: 91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
+Y+ + ++ + + + +G Y C KH V V+
Sbjct: 117 YYRNGKAFKFFHWNSNLTILKTN-------ISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 43.4 bits (102), Expect = 9e-06
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 77 LLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C + P + +W+ S I DSGEY+C
Sbjct: 21 LHCEVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITSASVNDSGEYRCQRGLSG 71
Query: 136 GTDETNCVV 144
+D +
Sbjct: 72 RSDPIQLEI 80
Score = 42.2 bits (99), Expect = 2e-05
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 53 TVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-----TVKWYKGNRELSKRDYSM 105
TV+ L + + L C +Y G++ L R+ S
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
Y I+ + EDSG Y C A + G
Sbjct: 224 EYQ-------ILTARREDSGLYWCEAATEDGN 248
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 52.4 bits (125), Expect = 5e-09
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
L CLS ++W ++ L + M+ S + I K ED+GEY+C +N
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 138 DETN 141
+N
Sbjct: 189 RRSN 192
Score = 43.1 bits (101), Expect = 9e-06
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 29/136 (21%)
Query: 51 QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMS- 106
+ T+E+ P P+V LL WYKGN ++ + +
Sbjct: 1 EVTIEAVP-------PQV-AEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNS 52
Query: 107 ---------------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
YS+G S+ +D G Y T+++ V +
Sbjct: 53 NMNFTGQAYSGREIIYSNG--SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV 110
Query: 152 SKEQQELAHNFLYSGE 167
++ ++ + + +
Sbjct: 111 TQPFLQVTNTTVKELD 126
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 53.1 bits (126), Expect = 5e-09
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSG 125
+V K LC S V + + + + G S+ I + ED+G
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303
Query: 126 EYKCVATNKHG 136
Y C A +
Sbjct: 304 RYLCGAHSDGQ 314
Score = 47.3 bits (111), Expect = 6e-07
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNREL--------SKRDYSMSYSDGVVSMEIIDCKPE 122
++ C C S KW + SK + + +VS+ +
Sbjct: 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519
Query: 123 DSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
D G Y C H ET V + E ++ +++
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555
Score = 45.0 bits (105), Expect = 4e-06
Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 18/121 (14%)
Query: 39 VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK-WYKGNRE 97
+ V P + + + +T + C + K YK
Sbjct: 94 LGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
Query: 98 LSKRDYSMSYS-----------------DGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
S + S+ I + D+G+Y C A + +++
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKK 213
Query: 141 N 141
N
Sbjct: 214 N 214
Score = 38.4 bits (88), Expect = 6e-04
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 58 PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYK----------------GNRELS 99
T P V++ + +LC + K ++K++ +
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389
Query: 100 KRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
+ + +S + G ++ + D+G Y C+ T
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV 435
Score = 35.0 bits (79), Expect = 0.009
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 10/108 (9%)
Query: 34 PEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK 93
PE + IT + R RQ + C V
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNR------HTRKYWCRQGARGGCITLISSEGYVSSKY 60
Query: 94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
R + ++ +G + I +DSG YKC +
Sbjct: 61 AGR-ANLTNFP---ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD 104
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 53.2 bits (127), Expect = 5e-09
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 58 PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVV 112
LR + ++V Q C G+ + + ++ ++ S +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 222
Query: 113 SM-EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
+ +++ D+G+Y+C+ + G +N +V E
Sbjct: 223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260
Score = 30.1 bits (67), Expect = 0.36
Identities = 8/81 (9%), Positives = 18/81 (22%), Gaps = 8/81 (9%)
Query: 60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC 119
F + + + + ++ P W + + + I
Sbjct: 79 FHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIW--------NISGDPTRTWNRAELAISTF 130
Query: 120 KPEDSGEYKCVATNKHGTDET 140
P V T+ H
Sbjct: 131 WPNFYQVIFEVITSGHQGYLA 151
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 51.2 bits (122), Expect = 1e-08
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME-IIDCKPED 123
R + +L C G P V W + + + +G+ + ++ KP+
Sbjct: 111 RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQP 168
Query: 124 SGEYKCVATNKHGTDETNCVVIVESEEESK 153
S + C+ N H + T+ ++ S E K
Sbjct: 169 SRNFSCMFWNAHMKELTSAIIDPLSRMEPK 198
Score = 49.7 bits (118), Expect = 4e-08
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPE 122
+ L C + ++ + + + + D S+ G I +
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 123 DSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
DSG+Y+C+ D V V++ + +
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR 111
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 49.4 bits (117), Expect = 2e-08
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 66 PRVMQVR--QTCKLLCCLSGKPPPTVKWY-------KGNRELSKRDYSMSYSDGVV---- 112
+++ + L C + + + +++L RD +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
++ I D G Y C A++ T + + V V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 50.5 bits (120), Expect = 2e-08
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
+ Q+ + L C +G P W ++ ++ + + Y
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 128 KCVATNKHGTDETNCVVIVES 148
C AT + E V + S
Sbjct: 70 LCTATCESRKLEKGIQVEIYS 90
Score = 46.3 bits (109), Expect = 7e-07
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSM---- 105
+ S P + ++ + + C ++ P + KG+ + +++
Sbjct: 87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146
Query: 106 -SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
S + + + C A ++ V +E
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKE 192
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 78 LCCLSGKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
L C + +V W N + + + SDG ++ + +D+G Y C+ +N
Sbjct: 361 LKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSN 418
Query: 134 KHGTDETNCVVIV 146
G + + V
Sbjct: 419 SVGNTTASATLNV 431
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 50.6 bits (120), Expect = 3e-08
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP----TVKWYKGNRELSKRDYSMSYSDGVV 112
A + R L ++G P T W K ++ +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE---------NNTA 52
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
++ + D E++G YK + V +
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
Score = 49.1 bits (116), Expect = 1e-07
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 20/104 (19%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCL---SGKPPP-----TVKWYKGNRELSKRD 102
+E A + P+ V +L + GK P W KG +
Sbjct: 86 LMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI---- 141
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
D + I + + +G Y + + +
Sbjct: 142 ------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Score = 37.1 bits (85), Expect = 0.001
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 74 TCKLLCCLSGKPPPTVK--WY---KGNRELSKRDYSMSYSDGVVS------MEIIDCKPE 122
+ ++ SG P T+K WY +G + + + S + +
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268
Query: 123 DSGEYKCVATNKHGTDET 140
D+ ++ CVA ++
Sbjct: 269 DTAKFWCVAKLYQQIEDE 286
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.2 bits (119), Expect = 3e-08
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 73 QTCKLLCCLSGKPPPTVKWY-------KGNRELSKRDYSMSYSDGVV----SMEIIDCKP 121
+ L C + + + +++L RD + ++ I
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 122 EDSGEYKCVATNKHGTDETNCVVIVE 147
D G Y C A++ T + + V V
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 39.4 bits (91), Expect = 2e-04
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 77 LLCCLSGKPPPTVKWYK--GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
++ CL V + +S+ D I +G C A
Sbjct: 28 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKIN 86
Query: 135 HGTDETNCVVIVESEEESKE 154
+ ++ ++V +
Sbjct: 87 DESYQSIMYIVVVVGYRIYD 106
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 49.0 bits (117), Expect = 1e-07
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 65 RPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIID 118
PR + + + +L C P +VKW N + S+ +DG ++
Sbjct: 358 APRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDG--TLNFSH 413
Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIV 146
D+G Y C+ TN G + + V
Sbjct: 414 VLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 47.5 bits (113), Expect = 2e-07
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
TV Q +T L C KP V +++ + ++S
Sbjct: 82 TVLFEW-LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQ 140
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ SG+Y C + + V I
Sbjct: 141 AN-------HSHSGDYHCTGNIGYTLFSSKPVTI 167
Score = 45.2 bits (107), Expect = 1e-06
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 56 SAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVV 112
+ P L P + V Q + L C + P +++W+ +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSY------ 54
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETN 141
DSGEY C +D +
Sbjct: 55 ---RFKANNNDSGEYTCQTGQTSLSDPVH 80
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 47.6 bits (113), Expect = 2e-07
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 78 LCCLS--GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C V +YK L Y + ++ I + EDSG Y C
Sbjct: 105 LRCHGWRNWDVYKVIYYKDGEALK-----YWYENH--NISITNATVEDSGTYYCTGKVWQ 157
Query: 136 GTDETNCVVI 145
E+ + I
Sbjct: 158 LDYESEPLNI 167
Score = 42.2 bits (99), Expect = 1e-05
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 61 TFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
L P ++ + L C + + KW+ + + S++ I+
Sbjct: 6 KVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLN---------IV 56
Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
+ K EDSGEYKC + ++ V +
Sbjct: 57 NAKFEDSGEYKCQHQQVNESEPVYLEVFSDW 87
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.5 bits (110), Expect = 4e-07
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
+ +P + L C + +K Y+G L S +M
Sbjct: 101 VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR--------SLRQKTMSYQWT--N 150
Query: 123 DSGEYKCVATNKHGTDETNCVV 144
+KC A N+ + VV
Sbjct: 151 LRAPFKCKAVNRVSQESEMEVV 172
Score = 44.6 bits (105), Expect = 2e-06
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 82 SGKPPPTVKWYKGNRELS--KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATN 133
V+W +G+ ++ KR G ++I + +DSG Y +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 134 KHGTDETNCVVIVESEEE 151
+GT N + + E
Sbjct: 83 TNGTRILNKALDLRILEM 100
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 45.4 bits (107), Expect = 5e-07
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPE 122
QT L C S + +++W + + + + +S +S+ + + +
Sbjct: 17 QTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
D G YKC+ + + + V+++ +
Sbjct: 77 DEGVYKCLHYSDSVSTKEVKVIVLAT 102
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 46.5 bits (110), Expect = 5e-07
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY---SD 109
V + N V V +L C G P V W + ++ + + +
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171
Query: 110 GVVSMEI-IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ ++ + + + C + +++
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNK 134
S G +++I D K +D+G Y+C+ +
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG 102
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 46.6 bits (110), Expect = 6e-07
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDG- 110
V + P T ++ + C +G +PP + W+ + + + G
Sbjct: 112 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGT 171
Query: 111 --VVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIVE 147
V S+ I+ + G + C ++ V +
Sbjct: 172 VTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
Score = 29.7 bits (66), Expect = 0.40
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 25/95 (26%)
Query: 77 LLCCLSGKPPPT-----VKWYKGNRELSKRDYSMSY-------------------SDGVV 112
L C L + W + S + +
Sbjct: 19 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDA 78
Query: 113 SMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 146
S+ + + ED G Y C T G+ + + V
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 44.7 bits (105), Expect = 8e-07
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPP--TVKWYKGNREL---SKRDYSM 105
+ P ++P C + T W N L +Y+
Sbjct: 4 VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 106 SYSDGVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ G ME + + + G Y+CV +N G+ + +
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 45.2 bits (106), Expect = 2e-06
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 26/111 (23%)
Query: 62 FLLRPRVMQVR--QTCKLLCCLS---GKPPPTVKWYKGNRELSKRDYSMSYSDGV----- 111
+ ++V ++ + C + K V W + +Y + Y +
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67
Query: 112 ----------------VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
S+ + D + D G Y C K+ + V +
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL 118
Score = 39.5 bits (91), Expect = 2e-04
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 28/103 (27%)
Query: 76 KLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYSDGV--------------------- 111
++ C + V W + ++ + +SY +
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196
Query: 112 ----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
S+++ K D G Y C V+ V +E
Sbjct: 197 SRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 44.5 bits (105), Expect = 2e-06
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 66 PRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
V + L C V + + ++ ++ + I +DS
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKATLKDS 149
Query: 125 GEYKCVATNKHGTDETNCVVIVESE 149
G Y C + V I ++
Sbjct: 150 GSYFCRGLVGSKNVSSETVNITITQ 174
Score = 42.6 bits (100), Expect = 1e-05
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 54 VESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDG 110
E P L P+ V + + L C + P + +W+ +S + S
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYF---- 57
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
I DSGEY+C +D V
Sbjct: 58 -----IDAATVNDSGEYRCQTNLSTLSDPVQLEV 86
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 43.3 bits (102), Expect = 6e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
+ +P + L C + +K Y+G L S +S + +
Sbjct: 106 VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR------SLRQKTMSYQWTN---- 155
Query: 123 DSGEYKCVATNKHGTDETNCVV 144
+KC A N+ + VV
Sbjct: 156 LRAPFKCKAVNRVSQESEMEVV 177
Score = 32.2 bits (73), Expect = 0.049
Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 15/79 (18%)
Query: 77 LLCCLS-GKPPPTVKWYKGNREL--------SKRDYSMSYSDGV------VSMEIIDCKP 121
L + W + K + + D V ++ I +
Sbjct: 19 LTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSK 78
Query: 122 EDSGEYKCVATNKHGTDET 140
ED G+Y ++
Sbjct: 79 EDRGDYYMRMLHETEDQWK 97
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 41.9 bits (98), Expect = 1e-05
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 85 PPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
V + +E+ + Y M + G++ M + + ED G Y + T +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST 125
Query: 142 CVVIVESEEESKEQQEL 158
V+I + ++ +++ E
Sbjct: 126 LVLIGDVYKKLQKEAEF 142
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 42.0 bits (98), Expect = 2e-05
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYK--GNRELSKRDYSMSYSD 109
++ A + L L C +G P P ++W G + ++
Sbjct: 114 ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV 173
Query: 110 GVVSME-IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHN 161
G+ ++ + + C + E + + ++ + Q H+
Sbjct: 174 GLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI-ADPFFRSAQHHHHH 225
Score = 32.0 bits (72), Expect = 0.058
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPEDSGEYKCVAT 132
V Y +E+ R + + G ++ I + DSG+Y C
Sbjct: 44 SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQ 103
Query: 133 NKHGTDETNCVV 144
+ ++ +
Sbjct: 104 DGDFYEKALVEL 115
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.3 bits (96), Expect = 2e-05
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPE 122
T L C + +++W ++ R ++ + +S+ I +
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA 113
Query: 123 DSGEYKCVATNKHGTDETNCVVIVE 147
D GEY C + V ++
Sbjct: 114 DEGEYTCSIFTMPVRTAKSLVTVLG 138
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 41.4 bits (97), Expect = 3e-05
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 82 SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
V + + + ++ + + +DSG Y C +
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKAT-------LKDSGSYFCRGLVGSKNVSSE 166
Query: 142 CVVI 145
V I
Sbjct: 167 TVQI 170
Score = 40.6 bits (95), Expect = 7e-05
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 54 VESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDG 110
E P L P+ +V + + L C + P + +W+ +S + S
Sbjct: 2 TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYF---- 57
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
I +DSGEY+C +D V
Sbjct: 58 -----IDAATVDDSGEYRCQTQLSTLSDPVQLEV 86
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 40.7 bits (95), Expect = 4e-05
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPED 123
+P + L C + +K Y+G L S R +MSY
Sbjct: 98 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NL 146
Query: 124 SGEYKCVATNKHGTDETNCVV 144
+KC A N+ + VV
Sbjct: 147 RAPFKCKAVNRVSQESEMEVV 167
Score = 40.3 bits (94), Expect = 6e-05
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 78 LCCLSGKPPPTVKWYKGNREL-----SKRDYSMSYSDGVV------SMEIIDCKPEDSGE 126
S P V W K ++ S+ S+ + V S+ I + D E
Sbjct: 15 FHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDE 74
Query: 127 YKCVATNKHGTDETNCVVIV 146
Y+ + N T + V+
Sbjct: 75 YEMESPNITDTMKFFLYVLE 94
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 39.5 bits (92), Expect = 5e-05
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 73 QTCKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMSYSD-GVVSMEIIDCKPE 122
T L C + +++W + L + + +S+ + D
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81
Query: 123 DSGEYKCVATNKHGTDETNCVVIV 146
D G+Y C + + V
Sbjct: 82 DEGQYTCSL-FTMPVKTSKAYLTV 104
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 41.3 bits (95), Expect = 7e-05
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 37 QQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR 96
Q L + R + T +L C V W N
Sbjct: 513 QTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNG 571
Query: 97 EL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
L Y + ++ I + DSG Y+C++ ++T V+ + E
Sbjct: 572 VLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLE 624
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 20/109 (18%)
Query: 53 TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-------- 102
+ S+ + +QV + LS W+ EL +
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPG 59
Query: 103 ---YSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIVE 147
Y + + + K +DSG + + + ++
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTIQ 104
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 39.8 bits (92), Expect = 2e-04
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYS 108
+T L+ PRV++V ++C L G P V G++ L+ +
Sbjct: 183 QTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGN 240
Query: 109 DGVVSMEIIDCKPEDSGEYK--CVATNKHGTDETNCVVIVES 148
D + + ED G + C + + ET V + S
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 38.7 bits (89), Expect = 4e-04
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 8/96 (8%)
Query: 51 QETVESAP-NFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMS 106
TV P P V + L C + G P TV +G +EL +
Sbjct: 79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-- 136
Query: 107 YSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETN 141
+ + + + G + C
Sbjct: 137 -GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171
Score = 26.7 bits (58), Expect = 3.6
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 77 LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
+ C S P + L K++ + + E+ + ++ + C + G
Sbjct: 19 VTCSTSCDQPKLLGI---ETPLPKKELLLP-GNNRKVYELSN--VQEDSQPMCYSNCPDG 72
Query: 137 TDETNCVVIV 146
+ V
Sbjct: 73 QSTAKTFLTV 82
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 39.6 bits (91), Expect = 2e-04
Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 2/87 (2%)
Query: 48 TFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY 107
P +V + L C T W + +
Sbjct: 490 PAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHATYSWRHKENVE--QSCEPGH 547
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNK 134
+ I + + G Y C A
Sbjct: 548 QSPNCILFIENLTAQQYGHYFCEAQEG 574
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 37.9 bits (87), Expect = 6e-04
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVAT 132
+C L PP T W + + S S + +PED G C
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRS------SELTLTPRPEDHGTNLTCQMK 197
Query: 133 NKHGTDETNCVVIV 146
+ T V +
Sbjct: 198 RQGAQVTTERTVQL 211
Score = 25.6 bits (55), Expect = 8.5
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
S+ I D + ED+G Y
Sbjct: 78 QKKNCSLSIGDARMEDTGSYFFRVERGRDV 107
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 36.7 bits (84), Expect = 6e-04
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC-KPEDSGEYKC 129
V TC P + W ++ + + + + + + + E SG Y C
Sbjct: 24 VILTCPQ------YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 130 VATNKHGTDET 140
D
Sbjct: 78 YPRGSKPEDAN 88
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 38.1 bits (88), Expect = 7e-04
Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 82 SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
+ W + + K Y++ S + + C ++
Sbjct: 35 FHVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASLNIQLTCNILTFGQLEQNV 92
Query: 142 CVVIV 146
+ +
Sbjct: 93 YGITI 97
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 36.9 bits (85), Expect = 0.001
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 74 TCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
L C + + +W LS S + VS + + +Y C+A
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALGNTLS------SQPNLTVSWDP---RISSEQDYTCIAE 176
Query: 133 N 133
N
Sbjct: 177 N 177
Score = 33.8 bits (77), Expect = 0.015
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSMSYSDGVV----------------SMEIIDCKPEDSGE 126
G+ + W L+ + S + S+++ + K ED+G
Sbjct: 25 GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84
Query: 127 YKCVATNKHGTDETN 141
Y+ + K ++
Sbjct: 85 YRAQISTKTSAKLSS 99
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 36.8 bits (84), Expect = 0.001
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 43 EPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD 102
+PLQ+ + V A + L TC+L C +V+W + L
Sbjct: 6 KPLQVEPPEPVVAVALGASRQL---------TCRLACA---DRGASVQWRGLDTSLGAVQ 53
Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
G + + + +G CV + T + ++V
Sbjct: 54 SD----TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 36.5 bits (84), Expect = 0.002
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 58 PNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSM 114
T + + +++C SG P P + W + EL+ + S + ++
Sbjct: 107 DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAV 166
Query: 115 E-IIDCKPEDSGEYKCVATNKHGTDET 140
+D + + C+ H
Sbjct: 167 SSKLDFNMTTNHSFMCLIKYGHLRVNQ 193
Score = 32.7 bits (74), Expect = 0.038
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 84 KPPPTVKWYKGNRELSKRDYS---MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
K V +Y + +S+ I+ +P D G Y+CV
Sbjct: 34 KEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDA 91
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 4/59 (6%)
Query: 78 LCCLS--GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
L C + TV W + + + + DSG Y C +
Sbjct: 26 LTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR--RLLLRSVQLHDSGNYSCYRAGR 82
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 53 TVESAP-NFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKR---DYSM 105
P + P V + L C + G P T+ +G +EL +R
Sbjct: 84 RTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPP 143
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATN 133
V++ ++ + + + C A
Sbjct: 144 RARGAVLTATVLARREDHGANFSCRAEL 171
Score = 28.5 bits (63), Expect = 0.91
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 60 FTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
F L+PRV V + L C + P E S R ++ +++
Sbjct: 3 FWADLQPRVAFVERGGSLWLNCSTNCPRPERGGL-----ETSLRRNGTQRGLRWLARQLV 57
Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
D E + C T + ++
Sbjct: 58 DI-REPETQPVCFFRCARRTLQARGLIRT 85
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 34.8 bits (79), Expect = 0.006
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 73 QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
+ +L C L +KW K +EL D + ++ + EDSG Y C
Sbjct: 15 TSVELTCPLDSDEN--LKWEKNGQELP------QKHDKHLVLQDFS-EVEDSGYYVCYTP 65
Query: 133 NKHGTDETNCVVIVESEEESK 153
+ V S +++K
Sbjct: 66 ASNKNTYLYLKARVGSADDAK 86
Score = 34.8 bits (79), Expect = 0.007
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK 120
L++ + + L C G T+KW K +S + + + +
Sbjct: 111 KNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIIS------PLNATKNTWNLGNNA 161
Query: 121 PEDSGEYKCVATNKHGT 137
+ G Y+C +
Sbjct: 162 KDPRGTYQCQGAKETSN 178
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.1 bits (78), Expect = 0.006
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 92 YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
KG + D G S+ + + + D G Y+C G ++V
Sbjct: 73 LKGRVHFTSNDLK----SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.1 bits (78), Expect = 0.007
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 84 KPPPTVKWYKGNREL-------SKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCV 130
+ + W+ + + + + V ++ I + ED+ Y
Sbjct: 32 ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91
Query: 131 ATNKHGTDET 140
K G ++
Sbjct: 92 VLKKTGNEQE 101
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 34.4 bits (78), Expect = 0.009
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 56 SAPNFTFLLRPRVMQVRQTCKLLCCLS--GKPPPTVKWYKGNRELSKRD----------Y 103
A + + ++ C S G P P + WY+ + L
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176
Query: 104 SMSYSDGVVSM----EIIDCKPEDSGEYKCVATN 133
++ + G++S+ + K + + C A
Sbjct: 177 TVREASGLLSLTSTLYLRLRKDDRDASFHCAAHY 210
Score = 29.0 bits (64), Expect = 0.59
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 23/97 (23%)
Query: 73 QTCKLLCCLSGKPPPT-VKWYKGNRE---------------------LSKRDYSMSYSDG 110
++ L C +G ++W+ +R ++ D
Sbjct: 16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75
Query: 111 VVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 146
+ + + + D +Y C V GT E + V
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 33.4 bits (76), Expect = 0.009
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 77 LLCCLSGKPPP--TVKWYKGNRELSKRDYSM------SYSDGV-----VSMEIIDCKPED 123
L C LS V W + ++ L+ + + S+ D V + + + D
Sbjct: 23 LQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVND 82
Query: 124 SGEYKC-VATNKHGTDETNCVVIV 146
+GEY C T GT + V
Sbjct: 83 TGEYFCIYHTYPDGTYTGRIFLEV 106
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 34.0 bits (77), Expect = 0.011
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 51 QETVESAP-NFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMS 106
+V P L+P ++ V ++ + C + P T+ ++GN L + +
Sbjct: 81 NVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA 140
Query: 107 YSDGVVSMEIIDCKP--EDSG-EYKCVATN 133
+ + ED + C+A
Sbjct: 141 APAPQEATATFNSTADREDGHRNFSCLAVL 170
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 33.9 bits (77), Expect = 0.014
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 51 QETVESAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMS 106
TV P L P V + L C + G P TV +G +EL +
Sbjct: 79 FLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-- 136
Query: 107 YSDGVVSMEIIDCKPEDSG-EYKCVATN 133
+ + + + G ++ C
Sbjct: 137 -GEPAEVTTTVLVRRDHHGAQFSCRTEL 163
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.4 bits (76), Expect = 0.014
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 83 GKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPEDSGEYKCVAT 132
V Y+ ++ S +G V++ I + + D G Y C
Sbjct: 46 SPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 105
Query: 133 NKHGTDETNCVVIVE 147
+ +E + VE
Sbjct: 106 DHSYQEEAAVELKVE 120
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.7 bits (75), Expect = 0.017
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 70 QVRQTCKLLCCLSGKPPPT--VKWY-----KGNRELSKRD--YSMSY--SDGVVSMEIID 118
+ ++ + C L WY +GN E + Y + S+ I D
Sbjct: 13 ETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRIND 72
Query: 119 CKPEDSGEYKCVATNKHGTDETNC 142
ED G Y+C G +
Sbjct: 73 LTVEDGGTYRCGLGVAGGYCDYAL 96
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 33.3 bits (76), Expect = 0.023
Identities = 7/60 (11%), Positives = 14/60 (23%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
+ C + K + I + +G Y+C + G
Sbjct: 24 IWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83
Score = 29.8 bits (67), Expect = 0.28
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKH 135
L C S P T K + E + G Y+C +++
Sbjct: 119 LLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.023
Identities = 30/138 (21%), Positives = 43/138 (31%), Gaps = 37/138 (26%)
Query: 7 EPRSL--RYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREP-----LQITFWQETVESAPN 59
E R L Y + I + ++ E L I W E + P+
Sbjct: 172 ELRDLYQTYH---VLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 60 FTFLLRPRV----MQVRQ------TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMS-YS 108
+LL + + V Q T KLL G P EL + +S
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTP---------GELRSYLKGATGHS 274
Query: 109 DGVVSMEIIDCKPEDSGE 126
G+V+ I DS E
Sbjct: 275 QGLVTAVAI--AETDSWE 290
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.1 bits (72), Expect = 0.028
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 87 PTVKWYK--GNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
P V W K G + D S+ + + P D+G Y+C A + E+
Sbjct: 42 PHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIES 101
Query: 141 NCVVIVESEEESKEQQELAHN 161
+ + + + K H+
Sbjct: 102 HSTTLYVT--DVKHHHHHHHH 120
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 32.5 bits (74), Expect = 0.047
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKH 135
L C S +K DGV I +G Y+C + H
Sbjct: 138 LQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTH 197
Query: 136 G 136
Sbjct: 198 T 198
Score = 31.4 bits (71), Expect = 0.10
Identities = 8/59 (13%), Positives = 17/59 (28%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
L C S + +R ++ + + G Y+C + +H
Sbjct: 238 LSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHS 296
Score = 30.6 bits (69), Expect = 0.19
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C YK +R + + S + +G Y C ++ H
Sbjct: 43 LRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQ---ESFNMSPVTTAHAGNYTCRGSHPH 97
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.0 bits (70), Expect = 0.066
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 27/102 (26%)
Query: 73 QTCKLLCCLSGKPPPT-----VKWYKGNRELSKRDYSMSY-------------------S 108
+ L C L + W + S + +
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 109 DGVVSMEIIDCKPEDSGEYKC-VATNKHGTDE--TNCVVIVE 147
S+ + + ED G Y C T G+ V+ +
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 31.7 bits (72), Expect = 0.067
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 78 LCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNK 134
L C S K G E + S ++ G + P Y+C A +
Sbjct: 120 LQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 179
Query: 135 H 135
+
Sbjct: 180 N 180
Score = 29.4 bits (66), Expect = 0.46
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 78 LCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
L C G+ + Y+ I E +G Y+C +
Sbjct: 24 LRCQGGQETQEYRLYREKKTAPWITRIPQELVK-KGQFPIPSITWEHTGRYRCYYGSDTA 82
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.0 bits (70), Expect = 0.068
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 70 QVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGV----------------- 111
V L C S T W +G S ++ +++G
Sbjct: 10 VVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHIS 69
Query: 112 ---VSMEIIDCKPEDSGEYKC 129
VS+ I + DSG Y C
Sbjct: 70 EGDVSLTIENSVESDSGLYCC 90
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 31.0 bits (69), Expect = 0.071
Identities = 15/87 (17%), Positives = 22/87 (25%), Gaps = 12/87 (13%)
Query: 75 CKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 125
C + C P V W K + + S V + D+G
Sbjct: 36 CPVKYC---VHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNG 92
Query: 126 EYKCVATNKHGTDETNCVVIVESEEES 152
Y C ++ V I E
Sbjct: 93 SYSCSTNFNSQVINSHSVTIHVRERSQ 119
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 31.8 bits (72), Expect = 0.075
Identities = 8/62 (12%), Positives = 14/62 (22%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
+ C + K + I +G Y+C + G
Sbjct: 24 IRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGW 83
Query: 138 DE 139
E
Sbjct: 84 SE 85
Score = 31.0 bits (70), Expect = 0.12
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 78 LCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNK 134
L C S + G+ +LS S G + P +C + +
Sbjct: 119 LQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178
Query: 135 HG 136
H
Sbjct: 179 HI 180
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 31.4 bits (71), Expect = 0.10
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELS-------KRDY 103
P L R + L C + G P V+W + + D
Sbjct: 238 GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS 297
Query: 104 SMSYSDGVVSMEIIDCKPEDSG-EYKCVATNK 134
S+ + S +D G + C ++
Sbjct: 298 DGSFF--LYSKLTVDKSRWQQGNVFSCSVMHE 327
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.3 bits (68), Expect = 0.11
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 80 CLSGKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 129
C + + ++ Y + + G VS+ I + +D G Y C
Sbjct: 36 CPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCC 89
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 31.0 bits (70), Expect = 0.15
Identities = 9/69 (13%), Positives = 20/69 (28%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
+CC + + + V I D +G+Y C+
Sbjct: 26 ICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELW 85
Query: 138 DETNCVVIV 146
E + ++ +
Sbjct: 86 SEPSNLLDL 94
Score = 26.4 bits (58), Expect = 4.4
Identities = 7/59 (11%), Positives = 11/59 (18%), Gaps = 3/59 (5%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
C K R Y + G Y+C + +
Sbjct: 121 FYCRLDTATSMFLLLKEGRSSH---VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.0 bits (68), Expect = 0.16
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 88 TVKWY-----KGNREL-SKRD-YSMSYSDG--VVSMEIIDCKPEDSGEYKCVA 131
+ WY N + S Y + G S+ I D + EDSG YKC A
Sbjct: 33 STTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.9 bits (67), Expect = 0.17
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
RQ + C V R + ++ +G + I +DSG YKC
Sbjct: 38 CRQGARGGCITLISSEGYVSSKYAGR-ANLTNFP---ENGTFVVNIAQLSQDDSGRYKC- 92
Query: 131 ATNKHGTDETNCV-VIVESEEE 151
+ + V + V
Sbjct: 93 GLGINSRGLSFDVSLEVLEHHH 114
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 30.0 bits (67), Expect = 0.18
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 75 CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKC 129
CK + R ++ +++ G ++ + D + EDSG Y C
Sbjct: 47 CKEAS---ALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWC 101
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 30.6 bits (69), Expect = 0.19
Identities = 8/59 (13%), Positives = 15/59 (25%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
+CC + + + V I D +G+Y C+
Sbjct: 23 ICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81
Score = 27.1 bits (60), Expect = 2.4
Identities = 6/58 (10%), Positives = 11/58 (18%), Gaps = 3/58 (5%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
C K R + + G Y+C + +
Sbjct: 118 FYCRLDTATSMFLLLKEGRSSHVQRGYGKVQ---AEFPLGPVTTAHRGTYRCFGSYNN 172
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 29.6 bits (67), Expect = 0.19
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 20/78 (25%)
Query: 91 WY-----KGNRELSKRD--YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
WY N E Y + S+ I D +DSG Y+C +++G+ +
Sbjct: 36 WYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAV 95
Query: 142 C-----------VVIVES 148
C VV V +
Sbjct: 96 CAALNDQYGGGTVVTVNA 113
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 29.7 bits (67), Expect = 0.21
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 81 LSGKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
+ + T+ + +L K++ S+ D + ++ + D + D+G Y C K G
Sbjct: 40 VPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC-GITKGGL 98
Query: 138 D 138
D
Sbjct: 99 D 99
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.8 bits (66), Expect = 0.22
Identities = 17/100 (17%), Positives = 24/100 (24%), Gaps = 33/100 (33%)
Query: 73 QTCKLLCCLSGKP---PPTVKWYKGNRELSKR--------------------DYSMSYSD 109
T +L C PP + W KG Y S+ D
Sbjct: 20 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 79
Query: 110 ----------GVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
++ + P+D G Y C E
Sbjct: 80 FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 30.3 bits (68), Expect = 0.22
Identities = 8/58 (13%), Positives = 15/58 (25%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C S + +R + +G + G Y+C +
Sbjct: 127 LSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD 184
Score = 29.5 bits (66), Expect = 0.44
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNKH 135
L C S ++ + DGV + I + +G Y+C + H
Sbjct: 27 LQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH 86
Query: 136 G 136
Sbjct: 87 S 87
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 29.9 bits (67), Expect = 0.31
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNKH 135
L C S ++ + + DGV + I + +G Y+C + H
Sbjct: 26 LQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTH 85
Query: 136 GTDET 140
+
Sbjct: 86 SPYQL 90
Score = 28.8 bits (64), Expect = 0.74
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
L C S + +R + +G + G Y+C + +
Sbjct: 126 LSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRD 183
>3r4d_B Spike glycoprotein; immunoglobulin, beta-sandwich, mceacam1A -
immunoglobulin FO spike NTD - galectin-like
beta-sandwich fold; HET: NAG; 3.10A {Murine hepatitis
virus}
Length = 288
Score = 30.2 bits (67), Expect = 0.31
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 88 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
+++ L KR Y +++ V +DC + E KC + H
Sbjct: 241 APRYWVTP--LVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTHHHH 286
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 29.2 bits (66), Expect = 0.31
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 89 VKWY-----KGNREL-SKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
WY + S YS + S+ I D + EDSG YKC A + +
Sbjct: 34 TNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNT 93
Query: 140 TNCVV 144
Sbjct: 94 GVGYK 98
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 29.0 bits (64), Expect = 0.33
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 52 ETVESAPNFTFLLRPRVMQ---VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS--MS 106
E V LRP +Q V K S + + WY S +S
Sbjct: 10 EEVVGVSGKPVQLRPSNIQTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYG 69
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
+ G ++ I K +DSG Y TN G +
Sbjct: 70 FDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.7 bits (64), Expect = 0.38
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 9/50 (18%)
Query: 92 YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
Y +Y++ I D + ED+G+YK + T
Sbjct: 61 YYERIHALGPNYNL---------VISDLRMEDAGDYKADINTQADPYTTT 101
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.8 bits (64), Expect = 0.38
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 80 CLSGKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 129
C ++ W G +R+ Y + + S+G VS+ I + D G Y C
Sbjct: 38 CRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCC 91
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.5 bits (66), Expect = 0.44
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 66 PRVMQVR--QTCKLLCCLSG-KPPPTVKWYKG----------------NRELSKRDYSMS 106
+ + V ++ L C ++ P ++W++G R + + S
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSE-STK 68
Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
+ S+ I + P D+G Y CV K D
Sbjct: 69 RENMDFSISISNITPADAGTYYCVKFRKGSPD 100
Score = 26.1 bits (57), Expect = 5.9
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 78 LCCLSGK---PPPTVKWYKGNRELSK-------RDYSMSYSDGVVSMEIIDCKPEDSG-E 126
C S T+KW+K ELS S+SYS + S + ED +
Sbjct: 137 FTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYS--IHSTAKVVLTREDVHSQ 194
Query: 127 YKCVATNKHGTDE 139
C + +
Sbjct: 195 VICEVAHVTLQGD 207
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.8 bits (64), Expect = 0.50
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 80 CLSGKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 129
C + K + G R +S++ Y++ G VS+ I + DSG Y C
Sbjct: 37 CPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 28.7 bits (64), Expect = 0.51
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
R C + K + + K +R +S +D + ++ + D D+ Y C
Sbjct: 39 RGAIWRDCKILVKTSGSEQEVKRDR-VSIKDNQ---KNRTFTVTMEDLMKTDADTYWC-G 93
Query: 132 TNKHGTDET 140
K G D
Sbjct: 94 IEKTGNDLG 102
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.4 bits (63), Expect = 0.60
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 19/79 (24%)
Query: 70 QVRQTCKLLCCLS----GKPPPTVKWYKGNR---------------ELSKRDYSMSYSDG 110
+ L C + +V W++ L+ S D
Sbjct: 20 LEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDH 79
Query: 111 VVSMEIIDCKPEDSGEYKC 129
+ I D + D+ Y C
Sbjct: 80 QAELHIRDVRGHDASIYVC 98
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 28.6 bits (64), Expect = 0.63
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 83 GKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
+ +D + M I+D + DSG Y C A +
Sbjct: 50 SNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS 104
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.5 bits (63), Expect = 0.79
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYK---------------GNRELSKRDYSMSY--SDG 110
++ + C L C + P ++WYK S Y+ +
Sbjct: 14 IILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTK 73
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHG 136
S+ I + DS Y CV +++
Sbjct: 74 QSSLHITASQLSDSASYICVVSDRGS 99
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 28.0 bits (62), Expect = 0.87
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 22/79 (27%)
Query: 73 QTCKLLCCLSGKPPPT---VKWYK--------------GNRELSKRDYS-----MSYSDG 110
K+ C VKW + + Y G
Sbjct: 17 GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG 76
Query: 111 VVSMEIIDCKPEDSGEYKC 129
VS++I + +D Y C
Sbjct: 77 DVSLQINTLQMDDRNHYTC 95
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 27.5 bits (60), Expect = 0.89
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 77 LLCCLSGKPPPTV--KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
L C L +W KG L + ++ V + + GEY CV
Sbjct: 27 LTCSLDDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD------DQWGEYSCV 76
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.8 bits (62), Expect = 0.89
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 89 VKWY-----KGNREL-SKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
WY N + S Y + S+ I D + EDSG YKC A ++
Sbjct: 34 TGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAED 93
Query: 140 TNC 142
Sbjct: 94 VGS 96
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.7 bits (62), Expect = 0.91
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 83 GKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 129
+ +D + + + M I+D + DSG Y C
Sbjct: 40 SNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.99
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 31/126 (24%)
Query: 1 MALRVFEPRSLRYPQDNPRLRTRAI-PKTIPAYVPEVQQVRRREPLQITFWQETVESAP- 58
+L V EP R ++ P + +P + L + W + ++S
Sbjct: 361 SSLNVLEPAEYR-----KMFDRLSVFPPSAH--IPT--IL-----LSL-IWFDVIKSDVM 405
Query: 59 NFTFLLRPRVMQVRQTCKLLCCLSG-----KPPPT---------VKWYKGNRELSKRDYS 104
L + +Q + + K V Y + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 105 MSYSDG 110
Y D
Sbjct: 466 PPYLDQ 471
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.3 bits (62), Expect = 1.1
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 73 QTCKLLCCLSGKPPPTVK-WYKGNRELSKRDYSMSYSDG---VVSMEIIDCKPEDSGEYK 128
Q C G+ + W +G + + + S +++ D+G+Y+
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 239
Query: 129 CVATNKHGTDETN 141
C+ + G +N
Sbjct: 240 CMIRTEGGVGISN 252
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 28.4 bits (64), Expect = 1.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 83 GKPPPTVKWYKGNRE--LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
G PP + + +R +S+R +S S S S+ I +PED +Y C
Sbjct: 181 GHPPKLLSYRNNDRPSGISER-FSASRSGNTASLTITGLQPEDEADYYC 228
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.5 bits (61), Expect = 1.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
G++ +E++ + ED+GEY C+ G
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQ 94
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE----ESKEQQELAH 160
I+ E +Y DE V VE + + Q L
Sbjct: 21 TILLQFKELGSDYLITLETAESNDE--MTVEVELSQLFTDDYGRLQALTR 68
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 83 GKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
G P + + R +S S S S+ I + ED +Y C + N
Sbjct: 40 GMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWN 91
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKC 129
V ++ + D KPEDSG Y
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNF 96
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 28.0 bits (62), Expect = 1.5
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 62 FLLRPRVMQV---RQTCKLLCCLSGKPPP----TVKWYKGNRELS-------KRDYSMSY 107
F+ P + V T K+ C + + W+ N E+ + DY+ +
Sbjct: 13 FIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTI 72
Query: 108 SDGVVSMEIIDCKPEDSG-EYKCVATNK 134
VVS I + SG E+KC NK
Sbjct: 73 R--VVSTLPIQHQDWMSGKEFKCKVNNK 98
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 24/91 (26%)
Query: 73 QTCKLLCCLSGKPPP-----TVKWYKGNRELSKRDYSMSYSD------------------ 109
+ C + P + W+ + K +
Sbjct: 19 DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78
Query: 110 -GVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
G S+ + + E++GEY+C +
Sbjct: 79 SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ 109
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 27.0 bits (60), Expect = 1.6
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
L C + V+ + ++ S + ED+G Y+C
Sbjct: 24 LRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVT--NLEDAGTYQC 73
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCV 130
G++ + +++ + EDSG Y+CV
Sbjct: 77 DHGLLRVRMVNLQVEDSGLYQCV 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 9/28 (32%)
Query: 2 ALRVFEPRSLRYPQDNPRLRTRAIPKTI 29
+L+++ S P L AI T+
Sbjct: 28 SLKLYADDSA------PAL---AIKATM 46
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 27.3 bits (60), Expect = 1.8
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 146
++ + +D D ++ + ED G Y C AT G+ + V
Sbjct: 77 SAKQSTGQDTEAELQDA--TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 27.8 bits (62), Expect = 1.9
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 8 PRSLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPL 45
P SLR P R + + + R
Sbjct: 175 PPSLRPANAAPARMMRHVATSRQCPLEPWMYTRDTRQR 212
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 26.6 bits (58), Expect = 2.1
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 89 VKWYKGNRELSKRDYSMSYSDGV------VSMEIIDCKPEDSGEYKCVATNKHGT 137
V+W +G+ +++ G ++I + +DSG Y + +GT
Sbjct: 30 VRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 84
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 26.4 bits (58), Expect = 2.4
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDET 140
++ I + + ED G Y + +
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELK 101
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 27.1 bits (60), Expect = 2.4
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 62 FLLRPR---VMQVRQTCKLLCCLSGKPPP----TVKWYKGNRELS-------KRDYSMSY 107
F+ P+ V+ + T K+ C + W+ + E+ + ++ ++
Sbjct: 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTF 64
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNK 134
V + I+ + E+KC +
Sbjct: 65 R-SVSELPIMHQDWLNGKEFKCRVNSA 90
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 27.4 bits (60), Expect = 2.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
S + I + DS Y C + + TD
Sbjct: 73 STSSFNFTITASQVVDSAVYFCALSGFYNTD 103
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.2 bits (60), Expect = 2.4
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 62 FLLRPR---VMQVRQTCKLLCCLSGKPPP----TVKWYKGNRELS-------KRDYSMSY 107
FL P+ + + +T ++ C + WY E+ + Y+ +Y
Sbjct: 5 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY 64
Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNK 134
V + ++ + EYKC +NK
Sbjct: 65 R-VVSVLTVLHQDWLNGKEYKCKVSNK 90
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 27.3 bits (60), Expect = 2.4
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 44 PLQITFWQETVESAPNFTFLLRPRVMQV-RQTCKLLCCLSGKPPP--TVKWYKGNRELSK 100
PL + ++ T + P + P ++ L C + G P ++W + +R +
Sbjct: 104 PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPA 163
Query: 101 RDYSMS 106
++ +
Sbjct: 164 TEFVTT 169
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 27.1 bits (60), Expect = 2.5
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 78 LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
L C + YK Y S II SG Y+C + +
Sbjct: 113 LQCQTRYGFDQFALYKEGDPAP---YKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 27.2 bits (60), Expect = 2.7
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 71 VRQTCKLLCCLSGKPPPTVKWYKGNRELS-------KRDYSMSYSDGVVSMEIIDCKPED 123
TC ++ P WY E+ + Y+ +Y V + ++ +
Sbjct: 42 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-VVSVLTVLHQDWLN 100
Query: 124 SGEYKCVATNK 134
EYKC +NK
Sbjct: 101 GKEYKCKVSNK 111
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 26.4 bits (58), Expect = 2.7
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 82 SGKPPPTVKWYKGNRELSKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
+ KG+ S+ ++ ++ + + ED+G Y C D
Sbjct: 36 QIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDF 95
Query: 140 TNCVVIVE 147
+ VV VE
Sbjct: 96 HDPVVEVE 103
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 27.2 bits (60), Expect = 2.9
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 62 FLLRPRVMQV---RQTCKLLCCLSGKPPP----TVKWYKGNRELSKRD------YSMSYS 108
F+ P+ V T K+ C + W+ + E+ S S
Sbjct: 19 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTL 78
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNK 134
V + I++ + +KC +
Sbjct: 79 RSVSELPIVERDWLNGKTFKCKVNSG 104
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 26.3 bits (58), Expect = 3.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 108 SDGVVSMEIIDCKPEDSGEYKCV 130
G++ + +++ + EDSG Y+CV
Sbjct: 72 DHGLLRVRMVNLQVEDSGLYQCV 94
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 26.9 bits (59), Expect = 3.3
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 89 VKWYKGNRELSKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE----TNC 142
+ RE ++ S S+ I + D+ Y C GT + T
Sbjct: 47 ILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGT 106
Query: 143 VVIVESEEESKE 154
+ V + ++ +
Sbjct: 107 RLKVLANIQNPD 118
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.8 bits (59), Expect = 3.4
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 77 LLCCLSGKPPPTVKWYK-GNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
L C + P K G L + ++ ++S G V SG Y+C
Sbjct: 125 LTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVD-------LNVSGIYRCYGW 177
Query: 133 NKHG 136
Sbjct: 178 YNRS 181
Score = 26.0 bits (57), Expect = 5.7
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 78 LCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH 135
+ C + + + N + + + + I +G Y+C H
Sbjct: 28 IQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH 87
Query: 136 GT 137
Sbjct: 88 YR 89
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 26.8 bits (59), Expect = 3.5
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 32 YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRP--RVMQVRQTCKLLCCLSGKPPP-- 87
+ + PL T + P LL P + + + L C G P
Sbjct: 324 FTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELALNELVTLTCLARGFSPKDV 382
Query: 88 TVKWYKGNRELSKRDY 103
V+W +G++EL + Y
Sbjct: 383 LVRWLQGSQELPREKY 398
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 26.9 bits (59), Expect = 3.5
Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 6/85 (7%)
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPED 123
TC ++ K + W + + + ++ + +
Sbjct: 130 SPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIE 189
Query: 124 SGEYKCVATNKHGTDETNCVVIVES 148
Y+C T+ H S
Sbjct: 190 GETYQCRVTHPHLPRALMRSTTKTS 214
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 26.6 bits (59), Expect = 3.7
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 83 GKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
G P + N +S S S S+ I + ED+ Y C
Sbjct: 201 GTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYC 248
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 26.9 bits (60), Expect = 4.1
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE----ESKEQQELAHNF 162
+I+ PE Y + DE +V VE + E +++ +
Sbjct: 348 KILVQFPELGSNYLITLETVNNQDE--MIVEVELSDLSTDNYIELEKIRRDI 397
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 26.7 bits (60), Expect = 4.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 99 SKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+K D S++Y+ GV VS I + + T K N V ++
Sbjct: 32 TKHDLSIAYTPGVASVSSAIAK-DKTLAYDL----TTKK-----NTVAVI 71
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 26.5 bits (59), Expect = 4.7
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 99 SKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNK 134
++ Y+ GV +S I D + S Y + +
Sbjct: 57 GFNWFNAYYTPGVSRISTNIRD-NNDSSLFY----SLR 89
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 25.7 bits (56), Expect = 4.9
Identities = 10/83 (12%), Positives = 16/83 (19%), Gaps = 23/83 (27%)
Query: 74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV---------------------- 111
C + W Y+ G
Sbjct: 20 HCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWK 79
Query: 112 -VSMEIIDCKPEDSGEYKCVATN 133
S+ I + D+G + C N
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKN 102
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 26.5 bits (59), Expect = 5.0
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
E + + + Y+ V T + D + VE E+
Sbjct: 350 EQLLKQRALAPHYQIVLTKEGPLDV--LTLNVEPCPET 385
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 26.0 bits (57), Expect = 5.0
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYK--------------GNRELSKRDYS--MSYSDGVVS 113
++ C + WY+ + K +S +S S G
Sbjct: 12 TEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSY 71
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTD 138
+ + + + +DS Y C G+
Sbjct: 72 LLLKELQMKDSASYLCAVQASGGSY 96
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 26.1 bits (57), Expect = 5.1
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 70 QVRQTCKLLCCLSGKPPPTVKWYK---------------GNRELSKRDYSMSY--SDGVV 112
+ L C + ++W++ RE + + S S G
Sbjct: 13 PEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRS 72
Query: 113 SMEIIDCKPEDSGEYKCVATNKHG 136
++ I +P DS Y C G
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSG 96
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 26.3 bits (59), Expect = 5.6
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 99 SKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
+ S+ Y+ GV V+ + PE + Y T++ N V +V
Sbjct: 36 DRETLSLLYTPGVADVARACAE-DPEKTYVY----TSRW-----NTVAVV 75
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 26.0 bits (57), Expect = 5.7
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 54 VESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKW----YKGNRELSKRDYSMS 106
ESA T L+ +V +T K L +S K T +W ++ + + +++Y +
Sbjct: 44 AESAQKCTHLI---ASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 98
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 26.1 bits (58), Expect = 6.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 131 ATNKHGTDETNCVVIVESEEES 152
A + G C++I+E+ EES
Sbjct: 144 ALEQQGLPYPRCILIIEACEES 165
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 26.0 bits (56), Expect = 6.5
Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 1/86 (1%)
Query: 71 VRQTCKL-LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
+ +C + C P P + W G S+ + C
Sbjct: 18 ITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSC 77
Query: 130 VATNKHGTDETNCVVIVESEEESKEQ 155
+ + V + +
Sbjct: 78 SLNWGNSLQILDQVELRAGYPPAIPH 103
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker
complexed with non-BRCT protein, three-helix bundle,
parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4
c.15.1.4 PDB: 1gzh_B
Length = 259
Score = 25.9 bits (56), Expect = 6.8
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 50 WQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKW----YKGNRELSKRDYS 104
+ E + L+ + +T K CL+ G P + W N+ + R+Y
Sbjct: 78 FNEAQCNTAYQCLLIADQH---CRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYL 134
Query: 105 MSYSDGVVSMEIIDCKP 121
+ + I+D +P
Sbjct: 135 LPAGYSLEEQRILDWQP 151
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 25.8 bits (57), Expect = 7.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 83 GKPPPTVKWYKGNRE--LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
G+ P V NR +S R +S S S ++ I +PED Y C
Sbjct: 190 GQAPRLVIHGVSNRASGISDR-FSGSGSGTDFTLTITRVEPEDFALYYC 237
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis,
transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB:
3g5p_A
Length = 183
Score = 25.6 bits (57), Expect = 8.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 1 MALRVFEPRSLRYPQDNPRLRTRAIP-KTIPAYVPEVQQ 38
M+ + +P LR A P + PE+Q+
Sbjct: 2 MSFSHV----CQVG--DPVLRGVAAPVERAQLGGPELQR 34
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 25.6 bits (56), Expect = 8.2
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 22/84 (26%)
Query: 68 VMQVRQTCKLLCCLSGKPPPTVKWYK------------GNRELSKRDYSMSYSDGV---- 111
+ Q + ++ C L+ + WY + S S G
Sbjct: 13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY 72
Query: 112 ------VSMEIIDCKPEDSGEYKC 129
+ M + + DSG Y C
Sbjct: 73 GSTRKNLRMILRNLIENDSGVYYC 96
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 25.6 bits (57), Expect = 8.8
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 27 KTIPAYVPEVQQVRRREPL----QITFW 50
Y+ + RR+PL I W
Sbjct: 142 LAAGEYLEGHTSMIRRDPLGVVASIAPW 169
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 25.6 bits (57), Expect = 9.0
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 60 FTFLLRPRVMQ-VRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEII 117
M +Q G+PP + + N E +S S S ++ I
Sbjct: 28 SVDSSGHSFMHWYQQK-------PGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTID 80
Query: 118 DCKPEDSGEYKC 129
+ +D Y C
Sbjct: 81 PVEADDVATYYC 92
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 25.7 bits (57), Expect = 9.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
EI+ P SG+++ + D + VE E+
Sbjct: 352 EIVVALPLLSGQFQITLSRDGHMDR--LDLAVELRSEA 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 25.7 bits (57), Expect = 9.6
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
+ VVS+ + + E + + + V ++ + +
Sbjct: 200 EEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYI 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,520,847
Number of extensions: 137140
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 456
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)