BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12422
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 79/190 (41%), Gaps = 46/190 (24%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM PP F L G+ + L V G PE R++W K L S+ +++KN VA
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTP------------------- 279
SL I +V D G Y C A NS+G + KL P
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 280 ---LNSSNILDLK-YKNG----------------VASLQIQEVFPEDEGVYVCTATNSLG 319
+N S L + YK+G VA+LQI + G Y C+A+N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 320 TAETKCKLTV 329
TA + KLT+
Sbjct: 182 TASSSAKLTL 191
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 72/192 (37%), Gaps = 48/192 (25%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP FA KL D G + + G +VSW K+G+ L L + + VA+LQ
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQ 160
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---LDLK---------------- 289
I + G Y C+A+N LGTA + KLT L+ + DLK
Sbjct: 161 ILQTDQSHVGQYNCSASNPLGTASSSAKLT-LSEHEVPPFFDLKPVSVDLALGESGTFKC 219
Query: 290 ------------------------YK----NGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
YK A+L + +V D G Y C A+N G
Sbjct: 220 HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Query: 322 ETKCKLTVRSTP 333
+L V+ P
Sbjct: 280 SCSAQLGVQEPP 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNG 243
T PP+F KL+D + G+ + L A ++G V+W K+ G+ + S+ + + Y
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
+A+LQ P + G Y C N GT E L+ L
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 44/185 (23%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP F K G + L ++G P +VSW K+ + L S + +N + S+
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443
Query: 249 IQEVFPEDEGVYVCTATNSLGT-------------------------------------- 270
I V D G Y C A+N +G+
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 271 ------AETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
A K K + S+ + + Y +A+LQ P + G Y C N GT E
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 325 CKLTV 329
L+V
Sbjct: 564 ATLSV 568
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N G+D CV
Sbjct: 412 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD--TCV 469
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 189 PPQFANKLT-DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
PP+F KL + + + + G PE +V W K+ + S+ + + VA L
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349
Query: 248 QIQEVFPEDEGVYVCTATN---------------------------SLGTAET--KCKL- 277
++ + ED G Y C A N +L A+ +C+L
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 278 -TP------------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
TP L S + +N + S+ I V D G Y C A+N +G+
Sbjct: 410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV 469
Query: 325 CKLTVRSTP 333
+T+++ P
Sbjct: 470 GSITLKAPP 478
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
K+G + P V WYK E+ + + MS+ + V +E+ + EDSG+Y C A N
Sbjct: 314 KIGGS-PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 15 PPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
P +V W+K E+ + + +SYS+ + +++ +P ++G+Y C N+ GT E
Sbjct: 506 PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 5 IKVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++ KV T P + WYK + +L S Y M + + V S+ I D GEY C A N
Sbjct: 25 LQCKVDGT-PEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENS 83
Query: 64 HGTDETNCVVIV 75
G ++ V+++
Sbjct: 84 VGAVASSAVLVI 95
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 PPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P + W K NRE+ +Y M+ + ++ ++ D+G+Y C A+N G D
Sbjct: 226 PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 44/189 (23%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP F K + G+ V G +++W K+ + + + A+L
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 249 IQEVFPEDEGVYVCTATN---------SLGTAE---------------------TKCKL- 277
+ +V D G Y C A+N LG E +CK+
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 278 -------------TPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
T + S+ + + VA L++ + ED G Y C A N+ G+A +
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Query: 325 CKLTVRSTP 333
L V+ P
Sbjct: 377 TSLKVKEPP 385
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 15 PPTVKWYKGNRELSKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P V WYK + EL K D ++ S+ V +++I+ G+Y C A+N GT
Sbjct: 130 PLQVSWYK-DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 68.2 bits (165), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P F++ L D + +GQ L V+G P PR++W NGQP+ + + GVA L I
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHI 68
Query: 250 QEVFPEDEGVYVCTATNSLG 269
Q+ PED G Y C A N+LG
Sbjct: 69 QDALPEDHGTYTCLAENALG 88
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P + W + + Y+ S + GV + I D PED G Y C+A N G
Sbjct: 39 PVPRITWLLNGQPIQ---YARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD 237
EL++ +TA PP F +L T+ G + L V G P P V + ++G + SS
Sbjct: 94 ELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ 151
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+ + + SL I E +PED G Y ATNS+G A + +L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASL 247
P F L + +G A + G P P VSW ++GQ +++S + + + + +G A L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL------------------------------ 277
I V + G Y ATN G A + +L
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 278 ------TP----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
TP + SS + + + SL I E +PED G Y ATNS+G A
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 322 ETKCKLTVR 330
+ +L V+
Sbjct: 186 TSTAELLVQ 194
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P VK+Y+ E+ S D+ +S + S+ I + PEDSG Y ATN G +
Sbjct: 131 PTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE 190
Query: 73 VIV 75
++V
Sbjct: 191 LLV 193
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 14 PPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P P V W++ + +S +S+SDG + I +SG Y ATN G +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 71 CVVIV 75
++V
Sbjct: 93 AELLV 97
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD 237
EL++ +TA PP F +L T+ G + L V G P P V + ++G + SS
Sbjct: 94 ELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ 151
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+ + + SL I E +PED G Y ATNS+G A + +L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASL 247
P F L + +G A + G P P VSW ++GQ +++S + + + + +G A L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL------------------------------ 277
I V + G Y ATN G A + +L
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 278 ------TP----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
TP + SS + + + SL I E +PED G Y ATNS+G A
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 322 ETKCKLTVR 330
+ +L V+
Sbjct: 186 TSTAELLVQ 194
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P VK+Y+ E+ S D+ +S + S+ I + PEDSG Y ATN G +
Sbjct: 131 PTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE 190
Query: 73 VIV 75
++V
Sbjct: 191 LLV 193
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 14 PPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P P V W++ + +S +S+SDG + I +SG Y ATN G +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 71 CVVIV 75
++V
Sbjct: 93 AELLV 97
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 56/205 (27%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+T TPP+F D+T G GDP P++ W K G+ +++ +++ +G
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 244 VAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
S L+IQ + P DE +Y C A+N++G +LT L I
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG---------VASLQIQEVFPEDEG 308
+D NG + +LQI++ D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 309 VYVCTATNSLGTAETK-CKLTVRST 332
Y C ATNS GT + L VR T
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGT 205
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSY----SDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
S P P + W+K + + + S+ + +++I + D G+Y+CVATN GT
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 14 PPPTVKWYKGNRELSKRDYS-MSYSDGVVSMEIIDC--KPEDSGEYKCVATNKHG 65
P P + W K +++S + + + + DG S+ I P D Y+CVA+N G
Sbjct: 34 PRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG 88
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
+T PP+F + D+ G GDP+PRV+W K G+ +NS +++ ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
A L+IQ + P DE VY C A NS+G KLT L +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG------VASLQIQEVFPEDEGVYV 311
+D NG +LQI+ D+G Y
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 312 CTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRF 351
C ATNS G VR + ANL + + APRF
Sbjct: 181 CVATNSAG---------VRYSSPANLY---VRVQNVAPRF 208
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 45/181 (24%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNGVASLQIQEVFPED 256
K ++ + + G+P+P ++W K+ P++ +SN + ++G +LQI+ D
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETD 175
Query: 257 EGVYVCTATNSLGT--------------AETKCKLTPLN----------------SSNIL 286
+G Y C ATNS G + + P++ S +
Sbjct: 176 QGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP 235
Query: 287 DLKYKNGVASLQIQEVFP-----------EDEGVYVCTATNSLGTAETKCKLTVRSTPAA 335
+K+ G L ++ P +D Y C A +SLG E ++TV+S P A
Sbjct: 236 YVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295
Query: 336 N 336
Sbjct: 296 G 296
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 3 NVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
N+ V VGS P P VKW +G +L+ D M V +E+ D K DS Y CVA +
Sbjct: 224 NITCVAVGS--PMPYVKWMQGAEDLTPED-DMPVGRNV--LELTDVK--DSANYTCVAMS 276
Query: 63 KHGTDETNCVVIV 75
G E + V
Sbjct: 277 SLGVIEAVAQITV 289
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P+F+ I G ++++ V G P P V W + + L + + + G L++
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLEL 261
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+V +D Y C A +SLG E ++T
Sbjct: 262 TDV--KDSANYTCVAMSSLGVIEAVAQIT 288
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNK 63
S P P + W+K + S S+G + +++I + D G+Y+CVATN
Sbjct: 132 ASGNPDPEITWFKDFLPVDP-----SASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 64 HG---TDETNCVVIVXXXXXXXXXXXLAHNFLYSGD 96
G + N V V ++H + G+
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN 222
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
+T PP+F + D+ G GDP+PRV+W K G+ +NS +++ ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
A L+IQ + P DE VY C A NS+G KLT L +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNGVASLQIQEVFPED 256
K ++ + + G+P+P ++W K+ P++ +SN + ++G +LQI+ D
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETD 175
Query: 257 EGVYVCTATNSLG 269
+G Y C ATNS G
Sbjct: 176 QGKYECVATNSAG 188
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 17/64 (26%)
Query: 11 STKPPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEIIDCKPEDSGEYKCVAT 61
S P P + W+K D+ S S+G + +++I + D G+Y+CVAT
Sbjct: 133 SGNPDPEITWFK--------DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 62 NKHG 65
N G
Sbjct: 185 NSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
+T PP+F + D+ G GDP+PRV+W K G+ +NS +++ ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
A L+IQ + P DE VY C A NS+G KLT L +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNGVASLQIQEVFPED 256
K ++ + + G+P+P ++W K+ P++ +SN + ++G +LQI+ D
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETD 175
Query: 257 EGVYVCTATNSLG 269
+G Y C ATNS G
Sbjct: 176 QGKYECVATNSAG 188
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATN 62
S P P + W+K + S S+G + +++I + D G+Y+CVATN
Sbjct: 131 AASGNPDPEITWFKDFLPVDP-----SASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 63 KHG 65
G
Sbjct: 186 SAG 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 52/189 (27%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+T + P F D+T G G+P+PR++W K G+ ++S +++ +G
Sbjct: 1 ETGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG 60
Query: 244 VAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
S L+IQ + DE +Y CTATNSLG T KL+ L +
Sbjct: 61 AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG------VASLQIQEVFPEDEGVYV 311
+D NG +LQI+ D+G Y
Sbjct: 121 EKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYE 180
Query: 312 CTATNSLGT 320
C ATNS GT
Sbjct: 181 CVATNSAGT 189
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 17/62 (27%)
Query: 14 PPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEIIDCKPEDSGEYKCVATNKH 64
P P + W+K D+ + S+G + +++I + D G+Y+CVATN
Sbjct: 136 PDPEISWFK--------DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSA 187
Query: 65 GT 66
GT
Sbjct: 188 GT 189
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 52/183 (28%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-LQ 248
P F D+T G G+P+PR++W K G+ ++S +++ +G S L+
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 249 IQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------------- 285
IQ + DE +Y CTATNSLG T KL+ L +
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 286 ----------------------LDLKYKNG------VASLQIQEVFPEDEGVYVCTATNS 317
+D NG +LQI+ D+G Y C ATNS
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNS 187
Query: 318 LGT 320
GT
Sbjct: 188 AGT 190
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNKHGT 66
P P + W+K + + S+G + +++I + D G+Y+CVATN GT
Sbjct: 137 PDPEISWFKDFLPVDP-----AASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
+T +PP F K D+ G GDP+PRV+W K G+ +NS +++ ++
Sbjct: 1 ETGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
A L+IQ + P DE +Y C A N G KLT L +
Sbjct: 61 AGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQL 104
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 189 PPQFANKLTD---KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNG 243
PP F N K ++ + + G+P+P ++W K+ P++ +SN + ++G
Sbjct: 105 PPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG 164
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLG 269
LQI+ D+G Y C A+NS G
Sbjct: 165 --GLQIESSEETDQGKYECVASNSAG 188
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 14 PPPTVKW-YKGNRELSKRDYSMSYSDGVVSMEIIDC--KPEDSGEYKCVATNKHG 65
P P V W KG + S+R ++ + + ++ I P D Y+CVA N HG
Sbjct: 34 PKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHG 88
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P + + +TD D G L S V G P P V W ++GQPL S N +++ L+
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRF 350
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ ED G+Y C A N GT +LT
Sbjct: 351 SKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
V S KP P V+W + + L+ ++ + S G + + EDSG Y+CVA NKHGT
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQN-RIEVSGGELRFSKLVL--EDSGMYQCVAENKHGT 371
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 45/167 (26%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
GQ + L G+P P++ W K L+ S K+ + L IQ V EDEG Y C
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRK----LDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECE 275
Query: 264 ATNSLGTAETKCKLTPLNSSNILD-----------------------------------L 288
A N G + ++ + LD L
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335
Query: 289 KYKNGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
+N + L+ ++ ED G+Y C A N GT +LTV++
Sbjct: 336 ASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 14 PPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
PP T +W EL Y + D V+S + K +D+G Y+CVATN GT
Sbjct: 35 PPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPV---KAKDAGSYQCVATNARGT 87
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 249 IQEVFPEDE----GVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFP 304
I+ FP D G V + G + K L+ S K+ + L IQ V
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDF 266
Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTP 333
EDEG Y C A N G + ++ + + P
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQP 295
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQE-VFPEDEGVYVCTATNS 267
L+ + +P W NG L D +Y+ L I V +D G Y C ATN+
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
Query: 268 LGTAETK 274
GT ++
Sbjct: 85 RGTVVSR 91
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P P +KW K + + + S S+ ++ ++ +D ED G Y+C A N G D +
Sbjct: 235 PVPQIKWRKLDGSQTSKWLS---SEPLLHIQNVDF--EDEGTYECEAENIKGRDTYQGRI 289
Query: 74 IV 75
I+
Sbjct: 290 II 291
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVASL 247
PP F L D+++ +GQ + +S V+G+P+P VSW +N QP+ + + G+ L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+I D G Y C A N G + + +L
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
Q+VI +P P V W + + + +R ++ G+ + I+ + D+G Y C
Sbjct: 21 QDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK 80
Query: 60 ATNKHGTDE 68
A N++G +
Sbjct: 81 AVNEYGARQ 89
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
A++ PQ K + T + G+ + S G PEP +SW +NG+ + + LK N
Sbjct: 4 AISMPQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--T 58
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----YKNGVASL 297
L ++ + D G YVC ATN G E + L +I+ LK Y+NG +L
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTL 114
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW---------TKNGQPLNSSNILDLKY 240
P + T ++GQ + L +G+P P ++W T+ + L+ +++K
Sbjct: 96 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR--IEVKG 152
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLG 269
++G +SL I++V D G Y C A + +G
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 11 STKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
S P P + W++ + + + + Y + S+ + + + D G Y C ATNK G DE
Sbjct: 29 SGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEK 86
Query: 70 NCVVIV 75
+ V
Sbjct: 87 QAFLQV 92
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGVASLQ 248
P F + D + +G V+G P+P V W K+ P+ S + Y + G SL
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKL 277
I EV +D+ Y C A NSLG A +L
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 279 PLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
P+ S + Y + G SL I EV +D+ Y C A NSLG A +L V +
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGVASLQ 248
P F + D + +G V+G P+P V W K+ P+ S + Y + G SL
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKL 277
I EV +D+ Y C A NSLG A +L
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 279 PLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
P+ S + Y + G SL I EV +D+ Y C A NSLG A +L V +
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P L D T+ + G+P P WTK+G+ + L G L+I
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ D G+Y CT NS G+ + CKLT
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 3 NVIKVKVGST-KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
+V K V +T +P PT W K + +++ Y +S G +EI DSG Y C
Sbjct: 22 SVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81
Query: 61 TNKHGTDETNCVVIV 75
N G+ ++C + +
Sbjct: 82 KNSAGSVSSSCKLTI 96
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 30/271 (11%)
Query: 15 PPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P ++ WY +G + +S + + +GV S + I + ED+G Y+C AT+ G +
Sbjct: 32 PESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 90
Query: 72 VVIVXXXXXXXXXXXLAHNFLYSGDRKYIEK-HIRPAPAIITTRQEIKSSYSSHTDDTGR 130
VV+ F D + + + PAPA+ S+ H ++
Sbjct: 91 VVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV---------SWLYHNEEVTT 141
Query: 131 TTTQMXXXXXXXXXXXXXXXXXXKKITRRMNSILXXXXXXXXXXXXKELIM----PPDTA 186
+ + I R + +++I+ PP +
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRCEGRV-----EARGEIDFRDIIVIVNVPPAIS 196
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
M PQ K + T + G+ + S G PEP +SW +NG+ + + LK N
Sbjct: 197 M--PQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TE 249
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
L ++ + D G YVC ATN G E + L
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 10 GSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSME-IIDCKPEDSGEYKCVATNKHGTD 67
S P P + W++ + + + + Y + S+ +++ II+ D G Y C ATNK G D
Sbjct: 218 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGED 274
Query: 68 ETNCVVIV 75
E + V
Sbjct: 275 EKQAFLQV 282
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGV 244
AM PP+F + +ID+G+ + V G P P VSW NG+ + S ++ + + G+
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
SL + V D G Y C A N G A +L L
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P V WY R + D + M S+ G+ S+ + D+G Y CVA N+ G
Sbjct: 33 PAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG 86
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 54/205 (26%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKY 240
P +A PP+ K ++ + G +GDP P + W KNG+ ++ S L+
Sbjct: 2 PGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 61
Query: 241 KNGVASLQIQEVFP-EDEGVYVCTATNSLGTAETK------------------------- 274
G++ L+I+ V D+ Y C A N +G A +
Sbjct: 62 PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 121
Query: 275 ------------CKLTPLNSSNILDLKYKNGV-----------ASLQIQEVFPEDEGVYV 311
CK + NI +K + V LQI+ ED+G Y
Sbjct: 122 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYE 181
Query: 312 CTATNSLGTAETKCK---LTVRSTP 333
C A NS+GT +K + VR P
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVP 206
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P P + W K ++ + S DG + +E + + ED G+Y+CVA N GT+ +
Sbjct: 140 PTPNIYWIKNQTKVDMSNPRYSLKDGFLQIE--NSREEDQGKYECVAENSMGTEHS 193
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHG 65
PPP++ W K +++S + + + I+ +P D Y+CVA N G
Sbjct: 36 PPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 91
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P ++ D T G+ LS + G P P + W + G+ L S + +L +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKL 277
EDEGVY C ATN +G ET KL
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKL 95
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
+P P +KWY+ +EL R Y MS ++ ++ + ED G Y C+ATN+ G ET+
Sbjct: 34 RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93
Query: 72 VVIVXXXXXXXXXXXLAHNFLYSGDRKYIEKHI----RPAPAI 110
+++ L + Y + H+ RP PA+
Sbjct: 94 KLLLQATPQFHPGYPLKEKY-YGAVGSTLRLHVMYIGRPVPAM 135
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKE 344
EDEGVY C ATN +G ET KL +++TP + G P KE
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPG-YPLKE 111
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
T + PP F N ++ + ++ V G P P V+W KNG + S+ + G
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GG 364
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
++L+I V DEG Y C A N G A++ +L
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN----SSNILDLKYKNGV 244
P +F ++ T G + L V GDP P + W KN Q LN S ++ L
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS---- 176
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGT 270
+LQI + P D GVY C+A N T
Sbjct: 177 GALQISRLQPGDSGVYRCSARNPAST 202
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 50/182 (27%)
Query: 192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN----GVASL 247
F + ++ +G+ L V G P P +W L ++ L+ K G ++L
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW------LRGEEVIQLRSKKYSLLGGSNL 277
Query: 248 QIQEVFPEDEGVYVCTAT----NSLGTAETKCKLTPL---NSSNI-----LDLKY----- 290
I V +D G Y C T N +AE + P + SN+ +D+++
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVS 337
Query: 291 ----------KN-------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
KN G ++L+I V DEG Y C A N G A++ +L
Sbjct: 338 GKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Query: 328 TV 329
V
Sbjct: 398 IV 399
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
S KP PTV W K + DY G ++ I+ D G Y+CVA N+ G +++
Sbjct: 337 SGKPVPTVNWMKNGDVVIPSDYFQIV--GGSNLRILGVVKSDEGFYQCVAENEAGNAQSS 394
Query: 71 CVVIV 75
+IV
Sbjct: 395 AQLIV 399
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 11 STKPPPTVKWYKGNR--ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
S PPP+ W +G +L + YS+ ++ + D +DSG Y CV T K+
Sbjct: 246 SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTD---DDSGTYTCVVTYKN 298
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVV-----SMEIIDCKPEDSGEYKCVATNKHGTDE 68
P PT+ W K ++L+ + VV +++I +P DSG Y+C A N T
Sbjct: 149 PMPTIHWQKNQQDLNP----IPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRT 204
Query: 69 TN 70
N
Sbjct: 205 GN 206
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQ 248
P F D T+ +G+ + V G P P +SW +G+P+ + L +NGV SL
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 249 IQEVFPEDEGVYVCTATNSLG 269
I+ V D G+Y C ATN G
Sbjct: 70 IEPVTSRDAGIYTCIATNRAG 90
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P++ ++D D G L G P P V W +NG+PL S N +++ L+
Sbjct: 294 PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVL----AGDLRF 349
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ ED G+Y C A N GT +L
Sbjct: 350 SKLSLEDSGMYQCVAENKHGTIYASAELA 378
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 184 DTAMTPPQFANKLTDKTID-DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
DT + P + +T GQ + L G+P PR+ W K L ++
Sbjct: 200 DTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK------VDGSLSPQWTT 253
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------DLKY 290
+LQI V EDEG Y C A NS G + ++ L +L++
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRW 313
Query: 291 ---------------KNG------------VASLQIQEVFPEDEGVYVCTATNSLGTAET 323
+NG L+ ++ ED G+Y C A N GT
Sbjct: 314 GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYA 373
Query: 324 KCKLTVRS 331
+L V++
Sbjct: 374 SAELAVQA 381
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
+ KP PTV+W + L+ ++ + + EDSG Y+CVA NKHGT
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQNRVEVLAG---DLRFSKLSLEDSGMYQCVAENKHGT 370
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P P +KW K + LS + ++ +++I ED G Y+C A N G D +
Sbjct: 234 PVPRIKWRKVDGSLSPQ-----WTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI 288
Query: 74 IV 75
IV
Sbjct: 289 IV 290
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 286 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
L ++ +LQI V EDEG Y C A NS G + ++ V++ P
Sbjct: 247 LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQP 294
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
PP T +W E+ S G + + K +D+G Y+C+A+N GT
Sbjct: 34 PPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGT 86
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P L ++T G+ +++S G+P P++ W K+ + L + + L K+G +L I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTI 724
Query: 250 QEVFPEDEGVYVCTATNSLGTAETK 274
+ V EDEG+Y C A + LG A+ +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVE 749
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
S PPP + W+K N L + D + DG ++ I + ED G Y C A + G +
Sbjct: 690 ASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 748
Query: 70 NCVVIV 75
I+
Sbjct: 749 EAFFII 754
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G+ + + A G P P + W KNG PL S++ + + L I EV D G Y
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVI 399
Query: 264 ATNSL 268
TN +
Sbjct: 400 LTNPI 404
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
PPP +KWYK L + ++++ + ME+ + D+G Y + TN
Sbjct: 358 PPPEIKWYKNGIPL-ESNHTIKAGHVLTIMEVSE---RDTGNYTVILTN 402
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 287 DLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338
DLK ++G +++L I V D+G+Y C A++ L T + + V P G
Sbjct: 276 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 333
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 51/193 (26%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKYK 241
+T PP+ K ++ + G +GDP P + W KNG+ ++ S L+
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 242 NGVASLQIQEVFP-EDEGVYVCTATNSLGTAETK-------------------------- 274
G++ L+I+ V D+ Y C A N +G A +
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 275 -----------CKLTPLNSSNILDLKYKNGV-----------ASLQIQEVFPEDEGVYVC 312
CK + NI +K + V LQI+ ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 313 TATNSLGTAETKC 325
A NS+GT +K
Sbjct: 181 VAENSMGTEHSKA 193
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P P + W K ++ + S DG + +E + + ED G+Y+CVA N GT+ +
Sbjct: 138 PTPNIYWIKNQTKVDMSNPRYSLKDGFLQIE--NSREEDQGKYECVAENSMGTEHS 191
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHG 65
PPP++ W K +++S + + + I+ +P D Y+CVA N G
Sbjct: 34 PPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 89
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P L ++T G+ +++S G+P P++ W K+ + L + + L K+G +L I
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTI 68
Query: 250 QEVFPEDEGVYVCTATNSLGTAETK 274
+ V EDEG+Y C A + LG A+ +
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVE 93
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
S PPP + W+K N L + D + DG ++ I + ED G Y C A + G +
Sbjct: 34 ASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 92
Query: 70 NCVVIV 75
I+
Sbjct: 93 EAFFII 98
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 48/156 (30%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLG 269
V+ P+P +SWT+N + + D +Y +NG L I V D+G+Y CTA N +G
Sbjct: 31 VESYPQPEISWTRNKILIK---LFDTRYSIRENG-QLLTILSVEDSDDGIYCCTANNGVG 86
Query: 270 TAETKC-----KLTPLNSSNILDLKYKNGV------------------------------ 294
A C K+ P + +++K G+
Sbjct: 87 GAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 295 ------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
SL+I V ED G Y C A NSLGTA +K
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P P+V W KG+ L + G S+ I + + ED+G+Y+CVA N GT
Sbjct: 128 PKPSVSWIKGDSALRENSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 285 ILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVRSTP 333
+ D +Y +NG L I V D+G+Y CTA N +G A C L V+ P
Sbjct: 50 LFDTRYSIRENG-QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP 101
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY 240
+PP +M PQ K + T + G+ + S G PEP +SW +NG+ + + LK
Sbjct: 95 VPPAISM--PQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG 149
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
N L ++ + D G YVC ATN G E + L
Sbjct: 150 SN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 10 GSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSME-IIDCKPEDSGEYKCVATNKHGTD 67
S P P + W++ + + + + Y + S+ +++ II+ D G Y C ATNK G D
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGED 178
Query: 68 ETNCVVIV 75
E + V
Sbjct: 179 EKQAFLQV 186
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+PP F + + G +L VV G+P P V W K GQ L +S L L
Sbjct: 13 SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 248 QIQEVFPEDEGVYVCTATN 266
+ P D GVYVC A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSGEYKCVATN 62
+PPP V W KG ++L+ + +DG + + P D+G Y C A N
Sbjct: 41 EPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 188 TPP--QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK--YKNG 243
PP Q + + T + GQ + L G PEP +SWTK+G+P+ + D K + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+ L I+ V DE YVC A N G + L
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 14 PPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P PT+ W K + D +SD + I + D EY C+A NK G
Sbjct: 224 PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG 278
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
TI +G+ L+L+ V GDP P VSW KN + L S + +LK++ G A I V D G
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 259 VYVCTATNSLGT 270
Y N G+
Sbjct: 293 KYGLVVKNKYGS 304
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++K KV + K + WYK RE+S D + DG+ ++ I + +D+G Y+ + +
Sbjct: 25 LLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83
Query: 64 HGTDETNCVVI 74
G D++ ++
Sbjct: 84 RGKDKSRLKLV 94
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 14 PPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
PPP V W K + L+ D+ ++ + G + I+ DSG+Y V NK+G++ ++
Sbjct: 250 PPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 309
Query: 72 VVIV 75
V V
Sbjct: 310 TVSV 313
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
T P F L+ + + L V E + W K+ + ++ D +K+G+ +
Sbjct: 5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICT 62
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I E +D G+Y + G +++ KL
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 94
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG----- 243
PP ++T++ G + L V G+P P +SW +G+ + +++ +Y+ G
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND----RYQVGQYVTV 484
Query: 244 ----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVAS 296
V+ L I V D G+Y C A + +G AE KL I ++ K VA
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAG 541
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 61/186 (32%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
+T+D G+ + G+P VSW K+G+ + S + L+I+ V ED+G
Sbjct: 353 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKG 402
Query: 259 VYVCTATNSLGTAETKCKL------------------------------------TP--- 279
+Y C N +AE +L TP
Sbjct: 403 MYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 280 --LNSSNILDL-KYKNG---------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
L+ I + +Y+ G V+ L I V D G+Y C A + +G AE KL
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 328 TVRSTP 333
V P
Sbjct: 523 NVYGLP 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 35/168 (20%)
Query: 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLNSSNILDLKYKNGVASLQIQEV 252
K KT + L +G P P W K G + +L+ + K +L I++
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313
Query: 253 FPEDEGVYVCTATNSLG----------TAETKCKLTP------LNSSNILDLKY------ 290
ED G Y+C NS+G TA K+ P + +Y
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 373
Query: 291 -----KNGVA------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
K+G A L+I+ V ED+G+Y C N +AE +L
Sbjct: 374 TVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
P PP++ + TDK G + G P+P+V+W K DLK +
Sbjct: 708 PLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW-KKAVGDTPGEYKDLKKSD 766
Query: 243 GV----ASLQIQEVFPEDEGVYVCTATNSLGTA 271
+ +L + + +EG Y+C A N +G+
Sbjct: 767 NIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKCVATNKHGTDET 69
P P +WYK E + R ++ +D V VS +I D EDSG+Y CV N G +
Sbjct: 276 PVPVFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334
Query: 70 NCVVIV 75
V+ V
Sbjct: 335 ETVLTV 340
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 285 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
+L+ + K +L I++ ED G Y+C NS+G + LTV + +A +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 348
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
V P P + W ++++ D Y D V + I D G YKC+A +
Sbjct: 452 VAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Query: 63 KHGTDE 68
K G E
Sbjct: 512 KVGVAE 517
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+PP F + G +L VV G+P P V W K GQ L +S L L
Sbjct: 13 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 248 QIQEVFPEDEGVYVCTATN 266
+ P D GVYVC A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSGEYKCVATN 62
+PPP V W KG ++L+ + +DG + + P D+G Y C A N
Sbjct: 41 EPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+PP F + G +L VV G+P P V W K GQ L +S L L
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 248 QIQEVFPEDEGVYVCTATN 266
+ P D GVYVC A N
Sbjct: 72 LLTAALPTDAGVYVCRARN 90
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSGEYKCVATN 62
+PPP V W KG ++L+ + +DG + + P D+G Y C A N
Sbjct: 40 EPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
TI +G+ L+L+ V GDP P VSW KN + L ++ +LK++ G A I V D G
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 259 VYVCTATNSLGT 270
Y N G+
Sbjct: 188 KYGLVVKNKYGS 199
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 14 PPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
PPP V W K + L++ D+ ++ + G + I+ DSG+Y V NK+G++ ++
Sbjct: 145 PPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204
Query: 72 VVIV 75
V V
Sbjct: 205 TVSV 208
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 12 TKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
+KP VKWY EL SK Y+ + GV+++EI+DC +DSG Y+ V TN G
Sbjct: 34 SKPTAEVKWYHNGVELQESSKIHYTNT--SGVLTLEILDCHTDDSGTYRAVCTNYKG 88
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
P T P+ ++ + GQ V+ P V W NG L S+ + +
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTA 271
GV +L+I + +D G Y TN G A
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEA 90
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 63/182 (34%), Gaps = 61/182 (33%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P +SW KNG+ + I +K ++ SL ++ V P D G Y C N G+
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
Query: 274 KCKL---------------TPLNSSNIL--DLKYKNGVAS-------------------- 296
L P N + +L D+++ V S
Sbjct: 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160
Query: 297 -----------------------LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
L++ V D G Y+C ATN +G AE L+V
Sbjct: 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220
Query: 334 AA 335
AA
Sbjct: 221 AA 222
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P P++ W K RE R + S+ + P D G Y CV NK G+
Sbjct: 43 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSN-----ILDLKYKNGVAS---LQIQE 251
G ++ V D +P + W K NG + +L V + L++
Sbjct: 129 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188
Query: 252 VFPEDEGVYVCTATNSLGTAETKCKLT 278
V D G Y+C ATN +G AE L+
Sbjct: 189 VSERDGGEYLCRATNFIGVAEKAFWLS 215
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G L L + G P P ++W K G L S K++N +L+I V ED G Y C
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCL 293
Query: 264 ATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 323
A+N +G+ + + LD + KN + + P ++G VC A G +
Sbjct: 294 ASNKMGSIRHTISVRVKAAPYWLD-EPKNLILA-------PGEDGRLVCRAN---GNPKP 342
Query: 324 KCKLTVRSTPAANLGKSPSKE 344
+ V P + +P++E
Sbjct: 343 TVQWMVNGEPLQSAPPNPNRE 363
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
+ S P P + WYK +L + + ++ I + EDSGEY C+A+NK G+
Sbjct: 245 IASGVPTPDIAWYKKGGDLPSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVASLQIQE-VFP 254
D +D + + KG+P P WT+N + N + + ++ ++G + + P
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRP 85
Query: 255 ED-EGVYVCTATNSLGTA 271
E+ EG Y C A N GTA
Sbjct: 86 EEYEGEYQCFARNKFGTA 103
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
PP+ +D +ID+G+ L ++ G+P P V+W+ G+ ++S +N + +
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 247 LQIQEVFPEDEGVYVCTATNSLGT 270
L I +V +D G+Y + N G+
Sbjct: 67 LIIMDVQKQDGGLYTLSLGNEFGS 90
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 13 KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+P P V W G R++ ++ + + +D + ++ I+D + +D G Y N+ G+D
Sbjct: 34 EPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD 91
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
PP+ +D +ID+G+ L ++ G+P P V+W+ G+ ++S +N + +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 247 LQIQEVFPEDEGVYVCTATNSLGT 270
L I +V +D G+Y + N G+
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGS 88
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 13 KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+P P V W G R++ ++ + + +D + ++ I+D + +D G Y N+ G+D
Sbjct: 32 EPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD 89
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---NILDLKYKNGVASLQIQEVFPED 256
T+ +G+ S G+P P V+W + GQ L++S + KYK ++ +I V D
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK---STFEISSVQASD 81
Query: 257 EGVYVCTATNSLGTAETKCKLT 278
EG Y NS G E + LT
Sbjct: 82 EGNYSVVVENSEGKQEAEFTLT 103
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---NILDLKYKNGVASLQIQEVFPED 256
T+ +G+ S G+P P V+W + GQ L++S + KYK ++ +I V D
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK---STFEISSVQASD 75
Query: 257 EGVYVCTATNSLGTAETKCKLT 278
EG Y NS G E + LT
Sbjct: 76 EGNYSVVVENSEGKQEAEFTLT 97
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 97 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
P
Sbjct: 217 PG 218
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 60 ATNKHGT 66
N++G+
Sbjct: 87 VENEYGS 93
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 35 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 95 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 154
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 155 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 214
Query: 333 PA 334
P
Sbjct: 215 PG 216
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P PT++W K +E + Y + S+ + P D G Y CV N++G+
Sbjct: 37 PMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 91
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 123 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 182
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 183 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 212
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 96 TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 155
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 156 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 215
Query: 333 PA 334
P
Sbjct: 216 PG 217
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 85
Query: 60 ATNKHGT 66
N++G+
Sbjct: 86 VENEYGS 92
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 124 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 183
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 184 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 213
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 97 TYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
P
Sbjct: 217 PG 218
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 60 ATNKHGT 66
N++G+
Sbjct: 87 VENEYGS 93
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 97 TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
P
Sbjct: 217 PG 218
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 60 ATNKHGT 66
N++G+
Sbjct: 87 VENEYGS 93
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P +SW KNG+ + I +K ++ SL ++ V P D G Y C N G+
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 274 KCKLTPLNSS 283
L L S
Sbjct: 209 TYTLDVLERS 218
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P P++ W K RE R + S+ + P D G Y CV NK G+
Sbjct: 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-----ASLQIQEVFPEDEGVYVCTATNSL 268
KG PEP + W K+G PL+ + + V +L I V P DEG Y C A N +
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 269 GTAET 273
GT E+
Sbjct: 194 GTRES 198
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASL 247
P+ TD + + L+ V+G PEP + W K+G+P+ N +++K+G
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 248 --QIQEVFPEDEGVYVCTATNSLGTAETK 274
+Q +D G Y C A N +G A ++
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 13 KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPEDSGEYKCVATNKHG 65
KP PT++W+K +S K+ + + + DG + + K +D GEY CVA N+ G
Sbjct: 36 KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 14 PPPTVKWYKGN---RELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTD 67
P PT+ W K +L + S +V ++ I + +P D G YKC+A N GT
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 68 ETNCVVIV 75
E++ ++
Sbjct: 197 ESSYAKLI 204
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-----ASLQIQEVFPEDEGVYVCTATNSL 268
KG PEP + W K+G PL+ + + V +L I V P DEG Y C A N +
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 269 GTAET 273
GT E+
Sbjct: 194 GTRES 198
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASL 247
P+ TD + + L+ V+G PEP + W K+G+P+ N +++K+G
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 248 --QIQEVFPEDEGVYVCTATNSLGTAETK 274
+Q +D G Y C A N +G A ++
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 13 KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPEDSGEYKCVATNKHG 65
KP PT++W+K +S K+ + + + DG + + K +D GEY CVA N+ G
Sbjct: 36 KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 14 PPPTVKWYKGN---RELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTD 67
P PT+ W K +L + S +V ++ I + +P D G YKC+A N GT
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 68 ETNCVVIV 75
E++ ++
Sbjct: 197 ESSYAKLI 204
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 18 VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
V WY G R+L + Y ++Y DGV + + D D G Y+C N +G D +
Sbjct: 34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS 86
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
D +V+W + L +S ++ Y++GVA L ++++ D+G Y C N G +
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 276 KL 277
+L
Sbjct: 89 EL 90
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 243 GVASLQIQEVFPEDEG--VYVCTATNSLGTAETKC--KLTPLNSSNILDLKYKNGVASLQ 298
+ S QI E+ G YVC N + + + L +S ++ Y++GVA L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
++++ D+G Y C N G + +L V+
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP---EDEGVYVCT 263
+ LS VKG+P+P + W NG ++ +D +Y SL I P +D G Y C
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINN--PNKTQDAGTYQCI 81
Query: 264 ATNSLGT 270
ATNS GT
Sbjct: 82 ATNSFGT 88
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
+P PT +W K L RD + G +++ I++ D+G Y+CVA NKHG
Sbjct: 322 RPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLS--DAGMYQCVAENKHGV 372
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P PT+ W + + + R S+G+ +EI + + ED+G Y+CVA N G +
Sbjct: 233 PVPTILWRRADGKPIARKARRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKN 284
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
T P + + D + + + G P+P W KNG PL + + + ++
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---- 346
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L I V D G+Y C A N G + +L+
Sbjct: 347 GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 202 DDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 260
+ G + L G+P P + W + +G+P+ + NG+ L+I ED G Y
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSY 273
Query: 261 VCTATNSLGTAETKCKLTPLNSSNILDL 288
C A NS G K +LT N + +
Sbjct: 274 ECVAENSRGKNVAKGQLTFYAQPNWVQI 301
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP---EDSGEYKCVATNKHGT 66
P P ++W ++ D M + VV ++ P +D+G Y+C+ATN GT
Sbjct: 36 PKPHIRWKLNGTDV---DIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 88
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 292 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
NG+ L+I ED G Y C A NS G K +LT + P
Sbjct: 257 NGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 296
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP---EDEGVYVCT 263
+ LS VKG+P+P + W NG ++ +D +Y SL I P +D G Y C
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINN--PNKTQDAGTYQCI 80
Query: 264 ATNSLGT 270
ATNS GT
Sbjct: 81 ATNSFGT 87
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
+P PT +W K L RD + G +++ I++ D+G Y+CVA NKHG
Sbjct: 321 RPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLS--DAGMYQCVAENKHGV 371
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P PT+ W + + + R S+G+ +EI + + ED+G Y+CVA N G +
Sbjct: 232 PVPTILWRRADGKPIARKARRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKN 283
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
T P + + D + + + G P+P W KNG PL + + + ++
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---- 345
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L I V D G+Y C A N G + +L+
Sbjct: 346 GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 379
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 202 DDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 260
+ G + L G+P P + W + +G+P+ + NG+ L+I ED G Y
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSY 272
Query: 261 VCTATNSLGTAETKCKLTPLNSSNILDL 288
C A NS G K +LT N + +
Sbjct: 273 ECVAENSRGKNVAKGQLTFYAQPNWVQI 300
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP---EDSGEYKCVATNKHGT 66
P P ++W ++ D M + VV ++ P +D+G Y+C+ATN GT
Sbjct: 35 PKPHIRWKLNGTDV---DIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 87
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 292 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
NG+ L+I ED G Y C A NS G K +LT + P
Sbjct: 256 NGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 295
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 205 QCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
Q + L+ G PEP ++WTK+G+P+ N + + L I++V DE Y+C
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 264 ATNSLGTAETKCKL 277
A N G + L
Sbjct: 89 AENKAGEQDATIHL 102
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 14 PPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P PT+ W K + + D YS +Y + ++ +D D EY C+A NK G
Sbjct: 41 PEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVD--KSDEAEYICIAENKAG 94
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
+G PEP +SW K+G PL+ D + L I D G YVC TN +G E+
Sbjct: 137 RGHPEPTISWKKDGSPLDDK---DERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERES 193
Query: 274 K-CKLTPLNSSNIL 286
+ +LT L + +
Sbjct: 194 EVAELTVLERPSFV 207
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 65/204 (31%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP--------------LNSSN 234
PP+ +D + G+ L+ +G P P + W K G+ L S +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA---ETKCKLTPL------NSSNI 285
+ L+ +G S DEGVYVC A N LG A + ++ L N S++
Sbjct: 69 LFFLRIVHGRKSRP-------DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 286 LDLKYKNGVASLQIQEVFPE----------------------------------DEGVYV 311
+ + V Q PE D G YV
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYV 181
Query: 312 CTATNSLGTAETK-CKLTVRSTPA 334
C TN +G E++ +LTV P+
Sbjct: 182 CVGTNMVGERESEVAELTVLERPS 205
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P PT+ W K L +D ++ G + I + D+G+Y CV TN G E+
Sbjct: 140 PEPTISWKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESE 194
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 13 KPPPTVKWYKGNRELS-----KRDYSMSYSDG-VVSMEIIDCKPE--DSGEYKCVATNKH 64
+P PT++WYKG + R + M G + + I+ + D G Y CVA N
Sbjct: 36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95
Query: 65 G 65
G
Sbjct: 96 G 96
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNG 243
T PP+ + L + + C++ VV+G+P P + W NGQPL S I+ ++ Y+ G
Sbjct: 4 TVYYPPRVVS-LEEPELRLEHCIEF--VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
Query: 244 VAS---LQIQEVFPEDEGVYVCTATNSLGTA 271
S L + + G Y A N LGTA
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTA 91
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 95
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 88
Query: 60 ATNKHGT 66
N++G+
Sbjct: 89 VENEYGS 95
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 90
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83
Query: 60 ATNKHGT 66
N++G+
Sbjct: 84 VENEYGS 90
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 94
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 87
Query: 60 ATNKHGT 66
N++G+
Sbjct: 88 VENEYGS 94
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++K KV + K + WYK RE+S D + DG+ ++ I + +D+G Y+ + +
Sbjct: 135 LLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 193
Query: 64 HGTDETNCVVI 74
G D++ ++
Sbjct: 194 RGKDKSRLKLV 204
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P F L+ + + L V E + W K+ + ++ D +K+G+ +L I
Sbjct: 118 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLI 175
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
E +D G+Y + G +++ KL
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P PT++W K +E + Y + S+ + P D G Y CV N++G+
Sbjct: 47 PMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKY--KNGVAS-----LQIQEV 252
G ++ V D +P + W K NG + LK +G+ S L + V
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 253 FPEDEGVYVCTATNSLGTAETKCKLTPL 280
D G Y+C +N +G A LT L
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVL 220
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++K KV + K + WYK RE+S D + DG+ ++ I + +D+G Y+ + +
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 298
Query: 64 HGTDETNCVVI 74
G D++ ++
Sbjct: 299 RGKDKSRLKLV 309
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
P F L+ + + L V E + W K+ + ++ D +K+G+ +L I
Sbjct: 223 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLI 280
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
E +D G+Y + G +++ KL
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276
P+ SW+K+ S L+++ K + +++ +D G+Y C T++ G A
Sbjct: 30 PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA----- 84
Query: 277 LTPLNSSNILDLKYKNGVASLQIQEVFP 304
SS ++D + + +L + FP
Sbjct: 85 -----SSYLIDEEELKRLLALSHEHKFP 107
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N G+
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP F K G + L ++G P +VSW K+ + L S + +N + S+
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 249 IQEVFPEDEGVYVCTATNSLGT 270
I V D G Y C A+N +G+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGS 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 189 PPQFANKLT-DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
PP+F KL + + + + G PE +V W K+ + S+ + + VA L
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 248 QIQEVFPEDEGVYVCTATN 266
++ + ED G Y C A N
Sbjct: 158 EMYNLSVEDSGDYTCEAHN 176
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
K+G + P V WYK E+ + + MS+ + V +E+ + EDSG+Y C A N
Sbjct: 122 KIGGS-PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 44/192 (22%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM PP F K + G+ V G +++W K+ + + + A
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGT------------------------------AETKC 275
+L + +V D G Y C A+N G +C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 276 KL--------------TPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
K+ T + S+ + + VA L++ + ED G Y C A N+ G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 322 ETKCKLTVRSTP 333
+ L V+ P
Sbjct: 182 SSSTSLKVKEPP 193
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 PPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P + W K NRE+ +Y M+ + ++ ++ D+G+Y C A+N G D
Sbjct: 34 PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNI--LDLKYKNGVAS----- 246
+KT+ G ++ V DP+P + W K NG + N+ + + GV +
Sbjct: 125 NKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEM 184
Query: 247 --LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS 282
L ++ V ED G Y C A NS+G + LT L +
Sbjct: 185 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 222
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G P+P + W KNG+ + I K + S+ + V P D+G Y C N G+
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS 99
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
S P PT++W K +E Y + Y+ + M+ + P D G Y C+ N++G+
Sbjct: 42 SGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGS 99
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P + W KNG+ + I K +N SL ++ V P D+G Y C N G+
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59
N +K + P PT++W K +E + Y + S+ + P D G Y CV
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 60 ATNKHGT 66
N++G+
Sbjct: 95 VENEYGS 101
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKY--KNGVAS-----LQIQEV 252
G ++ V D +P + W K NG + LK +G+ S L + V
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 253 FPEDEGVYVCTATNSLGTAETKCKLTPL 280
D G Y+C +N +G A LT L
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVL 220
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 214 KGDPEPRVSWTK--NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG-- 269
+G P P W K G + +L+ + K +L I++ ED G Y+C NS+G
Sbjct: 237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 270 --------TAETKCKLTP------LNSSNILDLKY-----------KNGVA------SLQ 298
TA K+ P + +Y K+G A L+
Sbjct: 297 SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR 356
Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKL 327
I+ V ED+G+Y C N +AE +L
Sbjct: 357 IESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
+T+D G+ + G+P VSW K+G+ + S + L+I+ V ED+G
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKG 366
Query: 259 VYVCTATNSLGTAETKCKL 277
+Y C N +AE +L
Sbjct: 367 MYQCFVRNDRESAEASAEL 385
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKCVATNKHGTDET 69
P P+ +WYK E + R ++ +D V VS +I D EDSG+Y CV N G +
Sbjct: 240 PAPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 70 NCVVIV 75
V+ V
Sbjct: 299 ETVLTV 304
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 285 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
+L+ + K +L I++ ED G Y+C NS+G + LTV + +A +
Sbjct: 260 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 214 KGDPEPRVSWTK--NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG-- 269
+G P P W K G + +L+ + K +L I++ ED G Y+C NS+G
Sbjct: 243 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 302
Query: 270 --------TAETKCKLTP------LNSSNILDLKY-----------KNGVA------SLQ 298
TA K+ P + +Y K+G A L+
Sbjct: 303 SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR 362
Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKL 327
I+ V ED+G+Y C N +AE +L
Sbjct: 363 IESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
+T+D G+ + G+P VSW K+G+ + S + L+I+ V ED+G
Sbjct: 323 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKG 372
Query: 259 VYVCTATNSLGTAETKCKL 277
+Y C N +AE +L
Sbjct: 373 MYQCFVRNDRESAEASAEL 391
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKCVATNKHGTDET 69
P P+ +WYK E + R ++ +D V VS +I D EDSG+Y CV N G +
Sbjct: 246 PAPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 304
Query: 70 NCVVIV 75
V+ V
Sbjct: 305 ETVLTV 310
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 285 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
+L+ + K +L I++ ED G Y+C NS+G + LTV + +A +
Sbjct: 266 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 318
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
PP V W+K REL S + Y + + + S+ I++ D GEY+C A+N G+
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP F K G + L ++G P +VSW K+ + L S + +N + S+
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 249 IQEVFPEDEGVYVCTATNSLGT 270
I V D G Y C A+N +G+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGS 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 189 PPQFANKLT-DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
PP+F KL + + + + G PE +V W K+ + S+ + + VA L
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 248 QIQEVFPEDEGVYVCTATN 266
++ + ED G Y C A N
Sbjct: 158 EMYNLSVEDSGDYTCEAHN 176
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 44/192 (22%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM PP F K + G+ V G +++W K+ + + + A
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 246 SLQIQEVFPEDEGVYVCTATN---------SLGTAE---------------------TKC 275
+L + +V D G Y C A+N LG E +C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 276 KL--------------TPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
K+ T + S+ + + VA L++ + ED G Y C A N+ G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 322 ETKCKLTVRSTP 333
+ L V+ P
Sbjct: 182 SSSTSLKVKEPP 193
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
K+G + P V WYK E+ + + MS+ + V +E+ + EDSG+Y C A N
Sbjct: 122 KIGGS-PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 PPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P + W K NRE+ +Y M+ + ++ ++ D+G+Y C A+N G D
Sbjct: 34 PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 87
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 60/177 (33%), Gaps = 62/177 (35%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G+P P W KNG+ + I K +N SL + V P D+G Y C N G+
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
L P N+S ++ D+++ KNG
Sbjct: 97 TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII--DCKPEDSGEYKCV 59
N +K + P PT +W K +E + Y +I P D G Y CV
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 86
Query: 60 ATNKHGT 66
N++G+
Sbjct: 87 VENEYGS 93
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKYKNG---------VASLQIQ 250
G ++ V D +P + W K NG + LK + L I+
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
V ED G Y C A NS+G + LT L
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNI--LDLKYKNGVAS----- 246
+KT+ G ++ V DP+P + W K NG + N+ + + GV +
Sbjct: 124 NKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEM 183
Query: 247 --LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS 282
L ++ V ED G Y C A NS+G + LT L +
Sbjct: 184 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G P+P + W KNG+ + I K + S+ + V P D+G Y C N G+
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS 98
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
S P PT++W K +E Y + Y+ + M+ + P D G Y C+ N++G+
Sbjct: 41 SGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGS 98
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNI--LDLKYKNGVAS----- 246
+KT+ G ++ V DP+P + W K NG + N+ + + GV +
Sbjct: 124 NKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEM 183
Query: 247 --LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS 282
L ++ V ED G Y C A NS+G + LT L +
Sbjct: 184 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G P P + W KNG+ + I K + S+ + V P D+G Y C N G+
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS 98
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
S P PT++W K +E Y + Y+ + M+ + P D G Y C+ N++G+
Sbjct: 41 SGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGS 98
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
++P + M P+ + T + Q ++++ V P +SW ++GQ L SSN ++K
Sbjct: 10 LVPRGSHMYAPKLQGPVAVYTWEGNQ-VNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68
Query: 240 YKNGVASLQIQEVFPEDE---GVYVCTATNSLG 269
N S EV P+ E G Y CTA N +G
Sbjct: 69 IYN-TPSASYLEVTPDSENDFGNYNCTAVNRIG 100
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE---DSGEYKCVATNKHGTDETN 70
P T+ W++ + L +YS S ++ P+ D G Y C A N+ G +
Sbjct: 46 PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE 105
Query: 71 CVVI 74
+++
Sbjct: 106 FILV 109
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
D + P+F K + +GQ + V P V+W K+ + L S +Y
Sbjct: 371 DRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN 430
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAE 272
L I V +D+G Y A NS GT E
Sbjct: 431 DYGLTINRVKGDDKGEYTVRAKNSYGTKE 459
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 PPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
PP V W+K +REL + Y Y+ + I K +D GEY A N +GT E
Sbjct: 405 PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE 459
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP--------------LNSSN 234
PP+ +D + G+ L+ +G P P + W K G+ L S +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
+ L+ +G S DEGVYVC A N LG A
Sbjct: 69 LFFLRIVHGRKS-------RPDEGVYVCVARNYLGEA 98
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 13 KPPPTVKWYKGNRELSK-----RDYSMSYSDG-VVSMEIIDCKPE--DSGEYKCVATNKH 64
+P PT++WYKG + R + M G + + I+ + D G Y CVA N
Sbjct: 36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95
Query: 65 G 65
G
Sbjct: 96 G 96
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
D + P+F K + +GQ + V P V+W K+ + L S +Y
Sbjct: 477 DRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN 536
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAE 272
L I V +D+G Y A NS GT E
Sbjct: 537 DYGLTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 PPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
PP V W+K +REL + Y Y+ + I K +D GEY A N +GT E
Sbjct: 511 PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE 565
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 40/187 (21%)
Query: 179 LIMPPDTAMTP---PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLNSS 233
+I P ++ P PQ ++ D ++ L + + P P W K G +
Sbjct: 204 VITEPVGSVRPKVNPQDKHQFID--VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQA 261
Query: 234 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG----------TAETKCKLTP---- 279
+L+ + K +L I++ ED G Y+C NS+G TA K+ P
Sbjct: 262 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 321
Query: 280 --LNSSNILDLKY-----------KNGVA------SLQIQEVFPEDEGVYVCTATNSLGT 320
+ +Y K+G A L+I+ V ED+G+Y C N +
Sbjct: 322 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES 381
Query: 321 AETKCKL 327
AE +L
Sbjct: 382 AEASAEL 388
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKCVATNKH 64
+ + P P+ +WYK E + R ++ +D V VS +I D EDSG+Y CV N
Sbjct: 238 MAQSYPTPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 296
Query: 65 GTDETNCVVIV 75
G + V+ V
Sbjct: 297 GGESVETVLTV 307
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 285 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
+L+ + K +L I++ ED G Y+C NS+G + LTV + +A +
Sbjct: 263 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 315
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNGVA 245
T P F KL I +G + + V G+P+P++ W K+G+ ++ S + + +G
Sbjct: 6 TAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 65
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
SL +D+G Y A N G +L
Sbjct: 66 SLHTTASTLDDDGNYTIMAANPQGRVSCTGRL 97
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 14 PPPTVKWYKGNRELSKRD--YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P + W+K +++S + Y++ DG S+ +D G Y +A N G
Sbjct: 35 PKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQG 89
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
G+P P W KNG+ + I K +N SL + V P D+G Y C N G+
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGS 100
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 3 NVIKVKV-GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII--DCKPEDSGEYKCV 59
N +K + P PT +W K +E + Y +I P D G Y CV
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 93
Query: 60 ATNKHGT 66
N++G+
Sbjct: 94 VENEYGS 100
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSNILDLKY--KNGVAS-----LQIQEV 252
G ++ V D +P + W K NG + LK +G+ S L + V
Sbjct: 132 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 191
Query: 253 FPEDEGVYVCTATNSLGTAETKCKLTPL 280
D G Y+C +N +G A LT L
Sbjct: 192 TEADAGEYICKVSNYIGQANQSAWLTVL 219
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVAS-L 247
P+F + T +G +++S VK +P + W ++ L + N +LK Y G L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 248 QIQEVFPEDEGVYVCTATNSLGT 270
+I D G Y CTATN +GT
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGT 183
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 57/203 (28%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW---------TKNGQPLNSSNILDLKY 240
P + T ++GQ + L +G+P P ++W T+ + L+ +++K
Sbjct: 2 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR--IEVKG 58
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------------------TPL 280
++G +SL I++V D G Y C A + +G + L P+
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 281 NSS-----------------------NILDLK-YKNGVAS-LQIQEVFPEDEGVYVCTAT 315
N S N +LK Y G L+I D G Y CTAT
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 316 NSLGTAETKCKLTVRSTPAANLG 338
N +GT + L + P++ G
Sbjct: 179 NHIGTRFQEYILALADVPSSPYG 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 12 TKPPPTVKWYKGNRELSKRDYS--MSYSDGV-VSMEIIDCKPEDSGEYKCVATNKHGT 66
+ PP ++ W + L ++ + +YS G + +EI D G Y C ATN GT
Sbjct: 126 SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ--PLNSSNILDLKYKNGVASL 247
P F K K + +G + L + P P++ W +N + N+ I + G +L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
I++V +D G Y +A N G +L
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVAS-L 247
P+F + T +G +++S VK +P + W ++ L + N +LK Y G L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 248 QIQEVFPEDEGVYVCTATNSLGT 270
+I D G Y CTATN +GT
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGT 183
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 57/203 (28%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW---------TKNGQPLNSSNILDLKY 240
P + T ++GQ + L +G+P P ++W T+ + L+ +++K
Sbjct: 2 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR--IEVKG 58
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------------------TPL 280
++G +SL I++V D G Y C A + +G + L P+
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 281 NSS-----------------------NILDLK-YKNGVAS-LQIQEVFPEDEGVYVCTAT 315
N S N +LK Y G L+I D G Y CTAT
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 316 NSLGTAETKCKLTVRSTPAANLG 338
N +GT + L + P++ G
Sbjct: 179 NHIGTRFQEYILALADVPSSPYG 201
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 12 TKPPPTVKWYKGNRELSKRDYS--MSYSDGV-VSMEIIDCKPEDSGEYKCVATNKHGT 66
+ PP ++ W + L ++ + +YS G + +EI D G Y C ATN GT
Sbjct: 126 SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 196 LTDKTIDDGQ--CL--DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQE 251
LTD+T++ G+ CL ++S + G WTKNG P+ S+ L + K + L I
Sbjct: 14 LTDQTVNLGKEICLKCEISENIPG------KWTKNGLPVQESDRLKVVQKGRIHKLVIAN 67
Query: 252 VFPEDEGVYV 261
EDEG YV
Sbjct: 68 ALTEDEGDYV 77
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
GQ + L G+P P + W K +P+ S+ + A L+I + EDEG+Y C
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTA----EISTSGAVLKIFNIQLEDEGIYECE 183
Query: 264 ATNSLGTAETKCKL 277
A N G + + ++
Sbjct: 184 AENIRGKDKHQARI 197
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
QNV P P ++W K L + S ++I + + ED G Y+C A
Sbjct: 129 QNVTLECFALGNPVPDIRWRK---VLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 62 NKHGTDETNCVVIV 75
N G D+ + V
Sbjct: 186 NIRGKDKHQARIYV 199
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN--SSNILDLKYKNGVASL 247
P F KL I +G + + V G+P+P++ W K+G+ ++ S + + +G SL
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+D+G Y A N G +L
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 14 PPPTVKWYKGNRELSKRD--YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P + W+K +++S + Y++ DG S+ +D G Y +A N G
Sbjct: 36 PKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQG 90
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGV 244
+M P+ ++ +T+ G V G P+P W KNG + S+ + + ++ V
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET 273
L I++V ED + A N G +
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSS 90
Score = 31.2 bits (69), Expect = 0.93, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
KP P +WYK ++ + D Y D V + I D EDS A N G ++
Sbjct: 32 KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH 91
Query: 71 CVVIV 75
++V
Sbjct: 92 AFLLV 96
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 185 TAMTPPQFANKLTDKTI--DDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKY 240
T ++ P++ K +K I GQ + + V G P P V W+ N +PL+ + + D
Sbjct: 304 TVVSAPKYEQK-PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD--- 359
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLG 269
+ L I+ V D+G Y C ATN G
Sbjct: 360 ----SGLVIKGVKNGDKGYYGCRATNEHG 384
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVRSTP 333
L + PEDEGVY C N +G + KLTV S P
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 44/172 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS--L 247
PQ+ +K D G + + +P ++ KNG+ +N + + N + L
Sbjct: 215 PQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------CK 276
+ PEDEGVY C N +G + CK
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 277 LTPLNSSNIL---DLKYKNGV------ASLQIQEVFPEDEGVYVCTATNSLG 319
+T L + N++ + K +G + L I+ V D+G Y C ATN G
Sbjct: 333 VTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P V W + LS +++ S G+V I K D G Y C ATN+HG
Sbjct: 337 PAPNVVWSHNAKPLSGGRATVTDS-GLV---IKGVKNGDKGYYGCRATNEHG 384
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP ++T+ LS V G P P + W K+G +++ + + +NGV LQ
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--LQ 65
Query: 249 IQEVFPEDEGVYVCTATNSLGTA 271
I+ D G Y C A+ G A
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEA 88
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
V + P PT+ W K +S +D + +GV ++I K D+G Y C+A+ G
Sbjct: 31 VATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSG 86
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 261 VCTATNS-------LGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 313
VC+ATN+ L +TK ++ PLNS + D YK V +L + V +D G+Y C
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEI-PLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCV 263
Query: 314 ATNSLGT 320
A+N +GT
Sbjct: 264 ASNDVGT 270
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 224 TKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
TK PLNS + D YK V +L + V +D G+Y C A+N +GT
Sbjct: 226 TKLEIPLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASLQIQEVFPEDEGVYV 261
G+ L+L ++K +SWTK+G L N+ +L +Y LQI+ P D G+Y
Sbjct: 16 GESLELQCMLK--DAAVISWTKDGVHLGPNNRTVLIGEY------LQIKGATPRDSGLYA 67
Query: 262 CTATNSL 268
CTA ++
Sbjct: 68 CTAARTV 74
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 261 VCTATNS-------LGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 313
VC+ATN+ L +TK ++ PLNS + D YK V +L + V +D G+Y C
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEI-PLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCV 263
Query: 314 ATNSLGT 320
A+N +GT
Sbjct: 264 ASNDVGT 270
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 224 TKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
TK PLNS + D YK V +L + V +D G+Y C A+N +GT
Sbjct: 226 TKLEIPLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 189 PPQFANKLTDKTID-DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
PP ++T+ DG L L GDP P +SW K G + + G +L
Sbjct: 8 PPIILQGPANQTLAVDGTAL-LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLG 269
QI+ + D G Y C AT+S G
Sbjct: 65 QIKNLRISDTGTYTCVATSSSG 86
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P P + W K RD + + +++I + + D+G Y CVAT+ G + V+
Sbjct: 36 PLPVISWLKEGFTFPGRDPRATIQE-QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Query: 74 IV 75
V
Sbjct: 95 DV 96
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD 237
+++ PDT + P D + G L+LS +P P+ SW NG P + +
Sbjct: 554 DVLYGPDTPIISPP------DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV-- 605
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATN 266
L I ++ P + G Y C +N
Sbjct: 606 ---------LFIAKITPNNNGTYACFVSN 625
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE 255
L + T+ G+ + + A G P P + W KNG PL S++ + + L I EV
Sbjct: 209 LVEATV--GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSER 261
Query: 256 DEGVYVCTATNSL 268
D G Y TN +
Sbjct: 262 DTGNYTVILTNPI 274
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
PPP +KWYK L + ++++ + ME+ + D+G Y + TN
Sbjct: 228 PPPEIKWYKNGIPL-ESNHTIKAGHVLTIMEVSE---RDTGNYTVILTN 272
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 287 DLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338
DLK ++G +++L I V D+G+Y C A++ L T + + V P G
Sbjct: 146 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 203
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI 235
G+ L+L +G P P+V WTK G PL++S +
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV 70
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-----KNGV 244
P F +L + + L V G P+P V W + G+ + + LKY K G
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGY 59
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
L I V +D VY ATN G+ L
Sbjct: 60 HQLIIASVTDDDATVYQVRATNQGGSVSGTASL 92
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-----EDEG 258
G+ + + G P+P ++W K ++++ + SL VFP +D G
Sbjct: 117 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL----VFPNGVERKDAG 172
Query: 259 VYVCTATNSLGTAETKCKL 277
YV A N G + +L
Sbjct: 173 FYVVCAKNRFGIDQKTVEL 191
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-----KNGV 244
P F +L + + L V G P+P V W + G+ + + LKY K G
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGY 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
L I V +D VY ATN G+ L
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-----EDEG 258
G+ + + G P+P ++W K ++++ + SL VFP +D G
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL----VFPNGVERKDAG 174
Query: 259 VYVCTATNSLGTAETKCKL 277
YV A N G + +L
Sbjct: 175 FYVVCAKNRFGIDQKTVEL 193
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASL 247
P F +L + + L V G P+P V W + G+ + + + ++K G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
I V +D VY ATN G+ L
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASL 94
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-----EDEG 258
G+ + + G P+P ++W K ++++ + SL VFP +D G
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL----VFPNGVERKDAG 174
Query: 259 VYVCTATNSLGTAETKCKL 277
YV A N G + +L
Sbjct: 175 FYVVCAKNRFGIDQKTVEL 193
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 18 VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
++WYK + L K + G + + D ED+G Y+CV T H + N
Sbjct: 157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN 209
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 265
C DLS + + ++ W K+ L+ N L + G L + +V ED G Y C T
Sbjct: 142 CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR-GTTHLLVHDVALEDAGYYRCVLT 200
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
PPP + W + L +K + ++ + DG ++E+ + +D+G Y C+A N G D
Sbjct: 413 PPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGND 467
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 201 IDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKYKNGVASLQIQEVFPEDEG 258
+D+G + GDP P + W + L S SN + +G ++ +V +D G
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQV--QDNG 454
Query: 259 VYVCTATNSLG 269
Y+C A N+ G
Sbjct: 455 TYLCIAANAGG 465
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 6 KVKVGSTKPPPTVKWYKGN-RELSKR---------DYSMSYSDGVVSMEIIDCKPEDSGE 55
+V S PP VKW+KG +LS + Y + + + I D +P +G
Sbjct: 27 RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGS 86
Query: 56 YKCVATNKHGTDETN 70
Y+C + K D +N
Sbjct: 87 YRCEVSTKDKFDCSN 101
>pdb|2AVG|A Chain A, Nmr Structure Of Cc1 Domain From Human Cardiac Myosin
Binding Protein C
Length = 120
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 6 KVKVGSTKPPPTVKWYKG---------NRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGE 55
+V S PP VKW+KG + L D Y + + + I D +P +G
Sbjct: 37 RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG 96
Query: 56 YKCVATNKHGTDETN 70
Y+C + K D +N
Sbjct: 97 YRCEVSTKDKFDCSN 111
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 18 VKWYKGNRELSKRDYSMSYSDGVVSMEIIDC-KPEDSGEYKCVATNK 63
V+WYK +E+ + D+ + ++G ++ +P D GE++CVA ++
Sbjct: 37 VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE 83
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 205 QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264
+C+ L+ V + P V W K+GQ + S+ + L+ + L + P D G + C A
Sbjct: 22 ECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVA 80
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 202 DDGQCLDLSAVVKGDPEPRVSWTK--NG---QPLNSSNILDLKYKNGVASLQIQEV-FPE 255
++GQ + G P P W K NG + NSS + K L I + E
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 256 DEGVYVCTATNSLGTA 271
D G Y C ATNS+G+A
Sbjct: 165 DPGEYECNATNSIGSA 180
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 280 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
+N N +L + +LQI E D G Y C ATNS+G+A L VR
Sbjct: 147 INKENYTEL----NIVNLQITE----DPGEYECNATNSIGSASVSTVLRVR 189
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 242 NGVASLQIQEVFPEDEGVYVCTAT-----NSLGTAETKCKLTPLNSSNILDLKYKNGVAS 296
+G + + E +E + TAT + E + L L + L+ V
Sbjct: 3 SGSSGARFTEGLRNEEAMEGATATLQCELSKAAPVEWRKGLEALRDGDKYSLRQDGAVCE 62
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334
LQI + D GVY C G T LTVR+ PA
Sbjct: 63 LQIHGLAMADNGVYSCVC----GQERTSATLTVRALPA 96
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
V W K + L + L+ V LQI + D GVY C +A + P
Sbjct: 37 VEWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSCVCGQERTSATLTVRALP 95
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 18 VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKC 58
VKW GN L D YS+ ++ + + + +P+DSG Y C
Sbjct: 39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSC 80
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P +F L D + +G L V+ P V W L + L+ + + L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ + P+D G Y C S G T LT
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLT 92
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL--DLKYKNGVASLQIQEVFPEDE 257
T+ GQ + L+ V+G EP + W K+G + + + L + ++ + L ++ V D
Sbjct: 13 TVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 258 GVYVC 262
G Y C
Sbjct: 73 GRYWC 77
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 31.2 bits (69), Expect = 0.95, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 19/81 (23%)
Query: 271 AETKCKLTPLNSSNILDLKYKNGV----------------ASLQIQEVFPEDEGVYVCTA 314
AE KC+ P++S L NG +L V D GVY C
Sbjct: 25 AELKCRTPPMSSVKWL---LPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 81
Query: 315 TNSLGTAETKCKLTVRSTPAA 335
TN G + L V S P++
Sbjct: 82 TNVAGNSNASAYLNVSSGPSS 102
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 215 GDPEPRVSWTKNGQPLNSSN 234
G PEP +SW +NG+ LN+ N
Sbjct: 133 GFPEPHLSWLENGEELNAIN 152
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
+V W + G +++SN L + +L ++EV P D+G Y A +S
Sbjct: 38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSS 85
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 18 VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKC 58
VKW GN L D YS+ + + + + +P+DSG Y C
Sbjct: 39 VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDSGRYSC 80
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P +F L D + +G L V+ P V W L + L+ + L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELV 66
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ + P+D G Y C S G T LT
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLT 92
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 215 GDPEPRVSWTKNGQPLNSSN 234
G PEP +SW +NG+ LN+ N
Sbjct: 133 GFPEPHLSWLENGEELNAIN 152
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 262
P V WTK+G+ + S L L+ ++ V L + V ED G Y+C
Sbjct: 40 PWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC 85
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G + L+ V P P++ W K+G PL L + E+ P+D+G Y C
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------PSPVLILPEIGPQDQGTYSCV 68
Query: 264 ATNS 267
AT+S
Sbjct: 69 ATHS 72
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 294 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
VA I + P D GV+VC+ G E ++V+ P
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLP 423
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-----YKNGVASLQIQ 250
L T D C+ + VKG+P+P + W NG LN S + K + LQ+
Sbjct: 10 LESPTSDHHWCIPFT--VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67
Query: 251 EVFPEDEGVYVCTATNSLGTAETK 274
+ G Y A N G E +
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQ 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G + L+ V P P++ W K+G PL L + E+ P+D+G Y C
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------PSPVLILPEIGPQDQGTYSCV 75
Query: 264 ATNS 267
AT+S
Sbjct: 76 ATHS 79
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS---SNILDLKYKNGVASLQIQEVFPED 306
Q V P + ++CTA S A T N S +D NG+ L I+ V P D
Sbjct: 20 QSVRPGADVTFICTA-KSKSPAYTLVWTRLHNGKLPSRAMDF---NGI--LTIRNVQPSD 73
Query: 307 EGVYVCTATNSLGTAETKCKLTVR 330
G YVCT +N + L V+
Sbjct: 74 AGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269
P + WT+ S +D NG+ L I+ V P D G YVCT +N
Sbjct: 39 PAYTLVWTRLHNGKLPSRAMDF---NGI--LTIRNVQPSDAGTYVCTGSNMFA 86
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 15 PPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P ++ WY +G + +S + + +GV S + I + ED+G Y+C AT+ G +
Sbjct: 28 PESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86
Query: 72 VVI 74
VV+
Sbjct: 87 VVL 89
>pdb|2Q8B|H Chain H, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
Length = 210
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYK----------NGVASLQIQEVFPEDEGVYVC 262
VK PE + W P N ++ D K++ + A LQ+ + ED VY C
Sbjct: 37 VKQRPEQGLEWIGRIDPANDNSEYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYC 96
Query: 263 TATNSLGTAET 273
T ++ G T
Sbjct: 97 TLSHFWGQGTT 107
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
D+S+ V + S TK + NS + D Y+ A+L I D GV++C A N+
Sbjct: 212 DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNT 270
Query: 268 LGTAETKCKL 277
G+A L
Sbjct: 271 FGSANVTTTL 280
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 281 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
NS + D Y+ A+L I D GV++C A N+ G+A L V
Sbjct: 235 NSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 282
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
D+S+ V + S TK + NS + D Y+ A+L I D GV++C A N+
Sbjct: 237 DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNT 295
Query: 268 LGTAETKCKL 277
G+A L
Sbjct: 296 FGSANVTTTL 305
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 281 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
NS + D Y+ A+L I D GV++C A N+ G+A L V
Sbjct: 260 NSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
>pdb|2Q8A|H Chain H, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
Length = 210
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYK----------NGVASLQIQEVFPEDEGVYVC 262
VK PE + W P N ++ D K++ + A LQ+ + ED VY C
Sbjct: 37 VKQRPEQGLEWIGRIDPANDNSEYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYC 96
Query: 263 TATNSLGTAET 273
T ++ G T
Sbjct: 97 TLSHFWGQGTT 107
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-----YKNGVASLQIQ 250
L T D C+ + VKG+P+P + W NG LN S + K + LQ+
Sbjct: 10 LESPTSDHHWCIPFT--VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67
Query: 251 EVFPEDEGVYVCTATNSLGTAETK 274
+ G Y A N G E +
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQ 91
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQP-------------LNSSNILDLKYKNGVASLQIQ 250
G ++L G P P + W GQ L+ +I +++ +++ I
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 251 EVFPEDEGVYVCTATN 266
+ ED G Y C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 5 IKVKVGSTK--------PPPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDS 53
+++ VG +K P ++ WY +G + +S + + +GV S + I + ED+
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDA 70
Query: 54 GEYKCVATNKHGTDETNCVVI 74
G Y+C AT+ G + VV+
Sbjct: 71 GIYRCQATDAKGQTQEATVVL 91
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQP-------------LNSSNILDLKYKNGVASLQIQ 250
G ++L G P P + W GQ L+ +I +++ +++ I
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 251 EVFPEDEGVYVCTATN 266
+ ED G Y C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|1AHW|B Chain B, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|E Chain E, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|H Chain H, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYK----------NGVASLQIQEVFPEDEGVYVC 262
VK PE + W P N + I D K++ + A LQ+ + ED VY C
Sbjct: 37 VKQRPEQGLEWIGLIDPENGNTIYDPKFQGKASITADTSSNTAYLQLSSLTSEDTAVYYC 96
Query: 263 TATNS 267
NS
Sbjct: 97 ARDNS 101
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 17 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
++ W + +L++ + + + V E+ D P DSG Y CV ++ G+D T
Sbjct: 33 SINWLRDGVQLAESNRTRITGEEV---EVQDSVPADSGLYACVTSSPSGSDTT 82
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G L L ++ D + ++W ++G L SN + + +++Q+ P D G+Y C
Sbjct: 18 GDLLQLRCRLRDDVQ-SINWLRDGVQLAESN----RTRITGEEVEVQDSVPADSGLYACV 72
Query: 264 ATNSLGTAET 273
++ G+ T
Sbjct: 73 TSSPSGSDTT 82
>pdb|2DAV|A Chain A, Solution Structure Of The First Ig-Like Domain Of Myosin-
Binding Protein C, Slow-Type
Length = 126
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 4 VIKVKVGSTKPPPTVKWYKGN--------------RELSKRDYSMSYSDGVVSMEIIDCK 49
+ KVK PT+KW+KG +E +R +S Y+ M+II K
Sbjct: 28 IAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER-HSRVYT---FEMQIIKAK 83
Query: 50 PEDSGEYKCVATNKHGTD 67
+G Y+C T K D
Sbjct: 84 DNFAGNYRCEVTYKDKFD 101
>pdb|3FKU|X Chain X, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Y Chain Y, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Z Chain Z, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|S Chain S, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|T Chain T, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|U Chain U, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
Length = 280
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
+G P +S+ N +P S ASL I + PEDE Y C+ +S
Sbjct: 180 QGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDS 233
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 12 TKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+K P V+W KG L D +S+ V ++I D+GEY CV G + T+
Sbjct: 33 SKAAP-VEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEYSCVC----GEERTS 87
Query: 71 CVVIV 75
+ V
Sbjct: 88 ATLTV 92
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-------LQIQEVFPEDEG 258
C+ S V G P P + W NG LN ++ + ++ A+ L++ + + G
Sbjct: 19 CIPFS--VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 259 VYVCTATNSLGTA 271
Y A N G A
Sbjct: 77 NYTLLAANPFGQA 89
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 287 DLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338
DLK ++G +++L I V D+G+Y C A++ L T + + V P G
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 117
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
Q V K +V K T KWYK E+ SKR ++S+ + I D +PED G+Y V
Sbjct: 25 QAVFKCEVSDEKV--TGKWYKNGVEVRPSKR-ITISHVGRFHKLVIDDVRPEDEGDYTFV 81
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 SMEIIDCKPEDSGEYKC 58
S+ I++ K EDSGEYKC
Sbjct: 52 SLNIVNAKFEDSGEYKC 68
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige
Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 SMEIIDCKPEDSGEYKC 58
S+ I++ K EDSGEYKC
Sbjct: 52 SLNIVNAKFEDSGEYKC 68
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 14 PPPTVKWYK----------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
PP W+K R S Y ++ + G + + + D+GEY C A N
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS--DTGEYSCEARNG 193
Query: 64 HGTDETNCVV 73
+GT T+ V
Sbjct: 194 YGTPMTSNAV 203
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 SMEIIDCKPEDSGEYKC 58
S+ I++ K EDSGEYKC
Sbjct: 52 SLNIVNAKFEDSGEYKC 68
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor
Fc Epsilon Ri
Length = 188
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 SMEIIDCKPEDSGEYKC 58
S+ I++ K EDSGEYKC
Sbjct: 55 SLNIVNAKFEDSGEYKC 71
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 208 DLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264
DL VV P V W K+G+ L S + L+ L++Q D G Y+C A
Sbjct: 13 DLELVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 SMEIIDCKPEDSGEYKC 58
S+ I++ K EDSGEYKC
Sbjct: 52 SLNIVNAKFEDSGEYKC 68
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 MEIIDCKPEDSGEYKCVATNKHGTDET 69
+E+ D P DSG Y CV ++ G+D T
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTT 88
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 288 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA 335
L+ LQI+ + ED G Y+C G T LTVR+ P+
Sbjct: 66 LRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSG 109
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
V++ ++ S P V+W KG+ L D YS+ ++I D+GEY CV
Sbjct: 27 VLQCELNSAAP---VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSCVC-- 81
Query: 63 KHGTDETNCVVIV 75
G + T+ ++ V
Sbjct: 82 --GQERTSAMLTV 92
>pdb|2FRG|P Chain P, Structure Of The Immunoglobulin-Like Domain Of Human
Tlt-1
Length = 106
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 29 KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
+R + G++ +E++ + ED+GEY C+ G
Sbjct: 56 RRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARG 92
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-------LQIQEVFPEDEG 258
C+ S V G P P + W NG LN ++ + ++ A+ L++ + + G
Sbjct: 23 CIPFS--VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 80
Query: 259 VYVCTATNSLGTA 271
Y A N G A
Sbjct: 81 NYTLLAANPFGQA 93
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-------LQIQEVFPEDEG 258
C+ S V G P P + W NG LN ++ + ++ A+ L++ + + G
Sbjct: 19 CIPFS--VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 259 VYVCTATNSLGTA 271
Y A N G A
Sbjct: 77 NYTLLAANPFGQA 89
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
PQ D+ + G+ ++L V G +W K + + S + ++ + L I
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
E G Y N LG+ + + LT
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLT 96
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
Length = 121
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74
S+ I D EDSG Y+C +++G+ + C +
Sbjct: 67 SLRINDLTVEDSGTYRCKPESRYGSYDAECAAL 99
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 19/75 (25%)
Query: 271 AETKCKLTPLNSSNILDLKYKNGV----------------ASLQIQEVFPEDEGVYVCTA 314
AE KC+ P++S L NG +L V D GVY C
Sbjct: 370 AELKCRTPPMSSVKWL---LPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426
Query: 315 TNSLGTAETKCKLTV 329
TN G + L V
Sbjct: 427 TNVAGNSNASAYLNV 441
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 296 SLQIQEVFPEDEGVYVCTAT---NSLGTAETKCKLTV 329
SL I E PED VY C A+ N T T +LT+
Sbjct: 73 SLHITETQPEDSAVYFCAASSFGNEKLTFGTGTRLTI 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,567,169
Number of Sequences: 62578
Number of extensions: 371705
Number of successful extensions: 2699
Number of sequences better than 100.0: 189
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1942
Number of HSP's gapped (non-prelim): 694
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)