Query psy12422
Match_columns 356
No_of_seqs 183 out of 1767
Neff 11.5
Searched_HMMs 46136
Date Fri Aug 16 18:55:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2E-39 4.3E-44 291.8 29.5 324 3-356 59-539 (1051)
2 KOG3513|consensus 100.0 2.1E-39 4.6E-44 291.6 26.8 306 1-337 256-619 (1051)
3 KOG4221|consensus 100.0 7E-30 1.5E-34 230.0 22.1 247 1-277 155-413 (1381)
4 KOG4221|consensus 100.0 1.1E-28 2.4E-33 222.3 21.9 309 1-334 54-420 (1381)
5 KOG4222|consensus 100.0 1.4E-28 3E-33 220.5 20.5 302 1-330 46-411 (1281)
6 PHA02785 IL-beta-binding prote 100.0 3.1E-27 6.7E-32 197.8 26.9 248 1-272 41-319 (326)
7 KOG4222|consensus 100.0 2.4E-27 5.3E-32 212.6 19.4 304 1-334 146-513 (1281)
8 KOG4194|consensus 100.0 6.6E-27 1.4E-31 197.4 19.9 225 1-338 518-804 (873)
9 PHA02826 IL-1 receptor-like pr 99.9 5.4E-23 1.2E-27 161.6 18.2 152 1-271 37-214 (227)
10 KOG4194|consensus 99.9 1.4E-22 3E-27 171.6 13.2 164 1-279 627-795 (873)
11 cd05762 Ig8_MLCK Eighth immuno 99.8 2.8E-19 6.1E-24 122.2 12.9 94 190-283 1-94 (98)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 5.7E-19 1.2E-23 120.8 10.9 82 1-82 15-97 (98)
13 PHA02785 IL-beta-binding prote 99.8 9.5E-18 2.1E-22 140.8 18.4 204 91-323 37-320 (326)
14 cd05852 Ig5_Contactin-1 Fifth 99.8 1.2E-18 2.7E-23 111.9 9.1 73 1-75 1-73 (73)
15 cd05745 Ig3_Peroxidasin Third 99.8 1.2E-18 2.6E-23 113.2 9.2 73 1-75 2-74 (74)
16 cd05747 Ig5_Titin_like M5, fif 99.8 7.1E-18 1.5E-22 114.6 12.9 90 189-278 3-92 (92)
17 cd05892 Ig_Myotilin_C C-termin 99.8 2.4E-18 5.1E-23 110.9 9.8 72 4-75 1-75 (75)
18 cd04975 Ig4_SCFR_like Fourth i 99.8 3.6E-18 7.8E-23 116.8 10.4 76 1-76 18-100 (101)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 5.6E-18 1.2E-22 112.9 10.8 75 1-75 10-86 (86)
20 cd05735 Ig8_DSCAM Eight immuno 99.8 4.4E-18 9.6E-23 114.0 10.2 81 1-81 1-87 (88)
21 cd05867 Ig4_L1-CAM_like Fourth 99.8 4.4E-18 9.6E-23 111.1 9.2 73 1-75 1-75 (76)
22 cd05851 Ig3_Contactin-1 Third 99.8 8.1E-18 1.8E-22 112.9 10.4 86 189-278 1-86 (88)
23 cd05868 Ig4_NrCAM Fourth immun 99.8 5.9E-18 1.3E-22 110.2 8.9 74 1-76 1-76 (76)
24 cd05893 Ig_Palladin_C C-termin 99.8 5.2E-18 1.1E-22 109.5 8.4 72 4-75 1-75 (75)
25 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 3.7E-17 8E-22 108.9 12.7 81 198-278 4-85 (86)
26 cd05737 Ig_Myomesin_like_C C-t 99.8 3.1E-17 6.8E-22 111.4 12.4 83 196-278 8-91 (92)
27 cd05723 Ig4_Neogenin Fourth im 99.7 1.4E-17 3.1E-22 107.0 9.7 71 3-75 1-71 (71)
28 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.3E-17 2.7E-22 114.3 9.9 76 1-76 18-100 (101)
29 cd05863 Ig2_VEGFR-3 Second imm 99.7 9.5E-18 2.1E-22 104.9 8.4 66 4-76 1-66 (67)
30 cd05748 Ig_Titin_like Immunogl 99.7 2.6E-17 5.7E-22 107.0 10.4 73 3-75 1-74 (74)
31 PF07679 I-set: Immunoglobulin 99.7 3.4E-17 7.5E-22 111.3 11.3 89 190-278 1-89 (90)
32 cd04969 Ig5_Contactin_like Fif 99.7 2.1E-17 4.5E-22 107.0 9.4 73 1-75 1-73 (73)
33 cd04975 Ig4_SCFR_like Fourth i 99.7 4.8E-17 1E-21 111.2 11.2 82 197-278 11-98 (101)
34 cd05744 Ig_Myotilin_C_like Imm 99.7 3.7E-17 8E-22 106.0 10.0 72 4-75 1-75 (75)
35 cd04978 Ig4_L1-NrCAM_like Four 99.7 2.3E-17 4.9E-22 108.2 9.1 76 1-76 1-76 (76)
36 cd05760 Ig2_PTK7 Second immuno 99.7 3.5E-17 7.6E-22 106.9 9.7 73 4-76 1-75 (77)
37 cd05876 Ig3_L1-CAM Third immun 99.7 3.1E-17 6.8E-22 105.4 9.0 70 4-75 1-70 (71)
38 cd05854 Ig6_Contactin-2 Sixth 99.7 6.6E-17 1.4E-21 107.5 10.8 77 2-78 1-84 (85)
39 cd04972 Ig_TrkABC_d4 Fourth do 99.7 1.6E-16 3.5E-21 107.4 12.8 84 195-278 6-89 (90)
40 cd05737 Ig_Myomesin_like_C C-t 99.7 5.5E-17 1.2E-21 110.1 10.3 75 1-75 16-92 (92)
41 cd05851 Ig3_Contactin-1 Third 99.7 5.9E-17 1.3E-21 108.7 9.8 73 1-76 16-88 (88)
42 cd05892 Ig_Myotilin_C C-termin 99.7 1.1E-16 2.5E-21 103.1 10.2 72 207-278 1-74 (75)
43 cd05743 Ig_Perlecan_D2_like Im 99.7 9.1E-17 2E-21 105.4 9.9 75 1-75 1-76 (78)
44 cd05730 Ig3_NCAM-1_like Third 99.7 9.1E-17 2E-21 110.1 10.3 77 1-77 18-94 (95)
45 cd05745 Ig3_Peroxidasin Third 99.7 9.5E-17 2.1E-21 104.2 9.3 73 203-278 1-73 (74)
46 cd05746 Ig4_Peroxidasin Fourth 99.7 6.6E-17 1.4E-21 103.3 8.4 68 4-73 1-68 (69)
47 cd05855 Ig_TrkB_d5 Fifth domai 99.7 8.5E-17 1.8E-21 103.9 8.8 69 6-74 3-77 (79)
48 cd05748 Ig_Titin_like Immunogl 99.7 3.2E-16 7E-21 101.9 11.4 73 206-278 1-73 (74)
49 cd04972 Ig_TrkABC_d4 Fourth do 99.7 2.4E-16 5.3E-21 106.6 10.7 75 1-75 15-90 (90)
50 cd04976 Ig2_VEGFR Second immun 99.7 1.6E-16 3.4E-21 101.8 9.3 70 4-76 1-70 (71)
51 cd04970 Ig6_Contactin_like Six 99.7 1.7E-16 3.6E-21 106.2 9.7 77 2-78 1-84 (85)
52 cd05852 Ig5_Contactin-1 Fifth 99.7 1.9E-16 4E-21 101.8 9.6 72 204-278 1-72 (73)
53 cd05869 Ig5_NCAM-1 Fifth immun 99.7 4.6E-16 9.9E-21 106.8 12.0 89 190-278 3-96 (97)
54 cd05857 Ig2_FGFR Second immuno 99.7 2.7E-16 5.8E-21 105.5 10.6 75 1-75 9-85 (85)
55 cd05864 Ig2_VEGFR-2 Second imm 99.7 1.2E-16 2.7E-21 101.3 8.3 68 4-75 1-68 (70)
56 cd05728 Ig4_Contactin-2-like F 99.7 2.9E-16 6.3E-21 104.8 10.5 81 194-278 4-84 (85)
57 cd05870 Ig5_NCAM-2 Fifth immun 99.7 4.9E-16 1.1E-20 106.8 11.9 89 189-278 2-97 (98)
58 cd05730 Ig3_NCAM-1_like Third 99.7 3.9E-16 8.5E-21 106.9 11.3 81 197-279 11-92 (95)
59 cd05725 Ig3_Robo Third immunog 99.7 1.7E-16 3.7E-21 101.6 8.9 69 4-75 1-69 (69)
60 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 2.5E-16 5.4E-21 100.0 9.5 68 1-73 1-68 (69)
61 cd05865 Ig1_NCAM-1 First immun 99.7 2.8E-16 6E-21 106.6 10.3 75 1-75 15-95 (96)
62 cd04968 Ig3_Contactin_like Thi 99.7 5.3E-16 1.1E-20 104.6 11.5 86 189-278 1-86 (88)
63 cd05853 Ig6_Contactin-4 Sixth 99.7 2.2E-16 4.8E-21 103.5 9.3 78 2-79 1-85 (85)
64 cd05869 Ig5_NCAM-1 Fifth immun 99.7 2.6E-16 5.7E-21 108.0 10.0 75 1-75 17-97 (97)
65 cd05764 Ig_2 Subgroup of the i 99.7 3.4E-16 7.4E-21 101.8 10.1 73 1-75 1-74 (74)
66 cd05866 Ig1_NCAM-2 First immun 99.7 5.9E-16 1.3E-20 103.9 11.4 84 194-278 5-90 (92)
67 cd05859 Ig4_PDGFR-alpha Fourth 99.7 3.1E-16 6.6E-21 107.5 10.2 81 198-278 12-98 (101)
68 cd05893 Ig_Palladin_C C-termin 99.7 4.5E-16 9.8E-21 100.5 10.2 72 207-278 1-74 (75)
69 cd05865 Ig1_NCAM-1 First immun 99.7 7.2E-16 1.6E-20 104.6 11.4 84 195-278 6-94 (96)
70 cd05743 Ig_Perlecan_D2_like Im 99.7 4.6E-16 1E-20 102.0 10.0 74 204-277 1-74 (78)
71 cd05863 Ig2_VEGFR-3 Second imm 99.7 2.2E-16 4.8E-21 98.8 7.9 64 207-278 1-64 (67)
72 cd05732 Ig5_NCAM-1_like Fifth 99.7 8.5E-16 1.8E-20 105.6 11.6 89 189-278 2-95 (96)
73 cd05728 Ig4_Contactin-2-like F 99.7 4.5E-16 9.9E-21 103.8 9.8 72 1-75 14-85 (85)
74 PF07679 I-set: Immunoglobulin 99.7 6.5E-16 1.4E-20 105.0 10.8 75 1-75 15-90 (90)
75 cd05731 Ig3_L1-CAM_like Third 99.7 3.2E-16 7E-21 101.2 8.8 70 4-75 1-70 (71)
76 cd05867 Ig4_L1-CAM_like Fourth 99.7 9.2E-16 2E-20 100.1 10.9 73 204-278 1-74 (76)
77 cd05747 Ig5_Titin_like M5, fif 99.7 6.3E-16 1.4E-20 105.0 10.5 73 1-73 18-91 (92)
78 cd05891 Ig_M-protein_C C-termi 99.7 1.3E-15 2.9E-20 103.0 11.8 83 196-278 8-91 (92)
79 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 5.5E-16 1.2E-20 101.6 9.6 69 6-74 3-79 (81)
80 cd07702 Ig2_VEGFR-1 Second imm 99.7 4.4E-16 9.6E-21 98.8 8.9 69 4-74 1-69 (72)
81 cd05726 Ig4_Robo Fhird immunog 99.7 5.6E-16 1.2E-20 104.8 9.8 76 1-78 1-84 (90)
82 cd05857 Ig2_FGFR Second immuno 99.7 1.9E-15 4.1E-20 101.3 12.0 80 199-278 4-84 (85)
83 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 1.1E-15 2.3E-20 100.3 10.3 71 208-278 2-79 (81)
84 cd05744 Ig_Myotilin_C_like Imm 99.7 1.7E-15 3.6E-20 98.3 11.1 72 207-278 1-74 (75)
85 cd04974 Ig3_FGFR Third immunog 99.7 2.3E-16 5E-21 106.4 7.3 76 1-76 1-90 (90)
86 cd05723 Ig4_Neogenin Fourth im 99.7 1.4E-15 3E-20 97.7 10.5 70 206-278 1-70 (71)
87 PHA02826 IL-1 receptor-like pr 99.7 2.7E-15 5.9E-20 118.2 14.3 124 197-320 30-213 (227)
88 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 6.6E-16 1.4E-20 100.1 9.1 70 4-75 1-73 (74)
89 cd05855 Ig_TrkB_d5 Fifth domai 99.7 1E-15 2.2E-20 98.8 9.8 71 208-278 2-77 (79)
90 cd05870 Ig5_NCAM-2 Fifth immun 99.7 7.4E-16 1.6E-20 106.0 9.7 75 1-75 16-98 (98)
91 cd05735 Ig8_DSCAM Eight immuno 99.7 2.1E-15 4.6E-20 101.0 11.5 80 204-283 1-85 (88)
92 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.3E-15 2.8E-20 102.5 10.5 72 1-75 18-90 (91)
93 cd05732 Ig5_NCAM-1_like Fifth 99.7 8.8E-16 1.9E-20 105.6 9.7 75 1-75 16-96 (96)
94 cd05848 Ig1_Contactin-5 First 99.7 2.4E-15 5.2E-20 102.1 11.7 82 190-273 2-87 (94)
95 cd04968 Ig3_Contactin_like Thi 99.7 1.2E-15 2.7E-20 102.7 9.9 73 1-76 16-88 (88)
96 cd05850 Ig1_Contactin-2 First 99.7 4.5E-15 9.7E-20 100.9 12.6 86 190-277 2-92 (94)
97 cd05763 Ig_1 Subgroup of the i 99.7 9.5E-16 2.1E-20 99.9 8.9 70 4-75 1-74 (75)
98 cd05868 Ig4_NrCAM Fourth immun 99.7 1.5E-15 3.3E-20 98.8 9.8 73 204-278 1-74 (76)
99 cd05891 Ig_M-protein_C C-termi 99.6 1.7E-15 3.7E-20 102.5 10.1 75 1-75 16-92 (92)
100 cd05856 Ig2_FGFRL1-like Second 99.6 8.6E-16 1.9E-20 102.4 8.6 74 1-75 9-82 (82)
101 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.6E-15 3.5E-20 99.3 9.6 74 204-278 1-74 (76)
102 cd05746 Ig4_Peroxidasin Fourth 99.6 1.1E-15 2.3E-20 97.7 8.3 69 207-278 1-69 (69)
103 cd05866 Ig1_NCAM-2 First immun 99.6 2.7E-15 5.8E-20 100.7 10.3 74 1-75 15-91 (92)
104 cd05773 Ig8_hNephrin_like Eigh 99.6 8.4E-15 1.8E-19 102.3 13.2 81 203-283 22-108 (109)
105 cd04969 Ig5_Contactin_like Fif 99.6 2.8E-15 6E-20 97.1 9.7 72 204-278 1-72 (73)
106 cd05740 Ig_CEACAM_D4 Fourth im 99.6 4.9E-15 1.1E-19 99.7 11.0 73 197-273 11-83 (91)
107 cd05773 Ig8_hNephrin_like Eigh 99.6 3.2E-15 7E-20 104.4 10.5 79 1-79 23-108 (109)
108 cd05736 Ig2_Follistatin_like S 99.6 2.8E-15 6E-20 98.0 9.3 74 4-77 1-75 (76)
109 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 4.3E-15 9.3E-20 94.4 9.8 69 204-278 1-69 (69)
110 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.2E-14 2.5E-19 100.0 12.7 88 189-277 2-97 (98)
111 cd07693 Ig1_Robo First immunog 99.6 8.1E-15 1.8E-19 101.8 11.9 89 189-277 1-97 (100)
112 KOG3515|consensus 99.6 2E-14 4.4E-19 127.9 17.2 334 2-355 113-517 (741)
113 cd05858 Ig3_FGFR-2 Third immun 99.6 2E-15 4.2E-20 102.0 8.3 75 1-75 1-89 (90)
114 cd05848 Ig1_Contactin-5 First 99.6 4.4E-15 9.5E-20 100.9 9.9 68 1-70 19-88 (94)
115 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.2E-15 4.8E-20 95.6 7.7 67 207-278 1-67 (70)
116 cd04973 Ig1_FGFR First immunog 99.6 3.7E-15 7.9E-20 97.9 8.9 71 1-75 9-79 (79)
117 cd05849 Ig1_Contactin-1 First 99.6 1.3E-14 2.8E-19 98.1 11.8 81 190-273 2-86 (93)
118 cd05750 Ig_Pro_neuregulin Immu 99.6 3.8E-15 8.2E-20 97.3 8.9 69 4-72 1-74 (75)
119 cd05854 Ig6_Contactin-2 Sixth 99.6 1.3E-14 2.8E-19 96.4 11.3 78 205-282 1-84 (85)
120 cd04976 Ig2_VEGFR Second immun 99.6 4.8E-15 1E-19 95.0 8.8 68 207-278 1-68 (71)
121 cd05749 Ig2_Tyro3_like Second 99.6 7.9E-15 1.7E-19 95.9 9.6 72 194-273 3-75 (81)
122 cd05765 Ig_3 Subgroup of the i 99.6 5.4E-15 1.2E-19 98.2 8.9 75 1-75 1-81 (81)
123 cd05876 Ig3_L1-CAM Third immun 99.6 4.7E-15 1E-19 95.2 8.2 69 207-278 1-69 (71)
124 cd05756 Ig1_IL1R_like First im 99.6 3.4E-15 7.4E-20 100.9 7.9 73 1-75 14-94 (94)
125 cd04973 Ig1_FGFR First immunog 99.6 1.2E-14 2.6E-19 95.4 10.2 77 197-278 2-78 (79)
126 cd05760 Ig2_PTK7 Second immuno 99.6 7E-15 1.5E-19 96.0 9.0 67 207-274 1-67 (77)
127 cd05849 Ig1_Contactin-1 First 99.6 8.6E-15 1.9E-19 98.9 9.7 66 2-69 20-86 (93)
128 cd05724 Ig2_Robo Second immuno 99.6 1.5E-14 3.2E-19 97.3 10.1 72 1-74 11-85 (86)
129 cd05850 Ig1_Contactin-2 First 99.6 1.8E-14 3.9E-19 97.9 10.3 67 1-69 19-87 (94)
130 cd05856 Ig2_FGFRL1-like Second 99.6 1E-14 2.3E-19 97.1 8.9 77 200-278 5-81 (82)
131 cd05763 Ig_1 Subgroup of the i 99.6 1.2E-14 2.5E-19 94.7 8.7 72 207-278 1-73 (75)
132 cd05750 Ig_Pro_neuregulin Immu 99.6 1.5E-14 3.4E-19 94.4 9.3 70 207-276 1-74 (75)
133 cd05733 Ig6_L1-CAM_like Sixth 99.6 8.8E-15 1.9E-19 95.5 8.0 66 4-69 1-71 (77)
134 cd05724 Ig2_Robo Second immuno 99.6 3.3E-14 7.2E-19 95.6 11.1 76 196-273 3-79 (86)
135 cd05742 Ig1_VEGFR_like First i 99.6 1.1E-14 2.4E-19 97.1 8.4 75 1-75 1-83 (84)
136 cd05725 Ig3_Robo Third immunog 99.6 2.4E-14 5.1E-19 91.6 9.3 68 207-278 1-68 (69)
137 cd05875 Ig6_hNeurofascin_like 99.6 3.8E-14 8.1E-19 92.3 10.3 65 4-70 1-72 (77)
138 cd05895 Ig_Pro_neuregulin-1 Im 99.6 2.3E-14 5E-19 93.6 9.3 69 4-72 1-75 (76)
139 cd04977 Ig1_NCAM-1_like First 99.6 5.5E-14 1.2E-18 95.1 11.4 84 194-278 5-91 (92)
140 cd05874 Ig6_NrCAM Sixth immuno 99.6 3E-14 6.6E-19 92.7 9.6 65 4-70 1-72 (77)
141 cd05722 Ig1_Neogenin First imm 99.6 2.7E-14 5.8E-19 97.7 9.8 73 1-75 14-95 (95)
142 cd05858 Ig3_FGFR-2 Third immun 99.6 2.8E-14 6E-19 96.4 9.6 76 204-279 1-89 (90)
143 cd05861 Ig1_PDGFR-alphabeta Fr 99.6 2.7E-14 5.9E-19 94.7 9.3 76 1-76 1-83 (84)
144 cd05736 Ig2_Follistatin_like S 99.6 3.1E-14 6.8E-19 93.0 9.4 73 207-279 1-73 (76)
145 cd05733 Ig6_L1-CAM_like Sixth 99.6 1.9E-14 4.1E-19 94.0 8.2 67 207-273 1-71 (77)
146 cd07693 Ig1_Robo First immunog 99.6 3.9E-14 8.4E-19 98.4 10.3 75 1-75 16-99 (100)
147 cd04970 Ig6_Contactin_like Six 99.6 5E-14 1.1E-18 94.1 10.1 78 205-282 1-84 (85)
148 cd07702 Ig2_VEGFR-1 Second imm 99.6 3.4E-14 7.3E-19 90.2 8.7 68 207-277 1-68 (72)
149 cd05764 Ig_2 Subgroup of the i 99.6 6.7E-14 1.4E-18 90.9 10.1 72 204-278 1-73 (74)
150 cd05853 Ig6_Contactin-4 Sixth 99.6 4.7E-14 1E-18 92.5 9.2 78 205-282 1-84 (85)
151 cd04974 Ig3_FGFR Third immunog 99.5 4.5E-14 9.8E-19 95.2 9.3 75 204-278 1-88 (90)
152 cd04967 Ig1_Contactin First Ig 99.5 9.6E-14 2.1E-18 94.0 11.0 82 190-273 2-87 (91)
153 cd04977 Ig1_NCAM-1_like First 99.5 4.5E-14 9.9E-19 95.5 9.3 74 1-75 15-92 (92)
154 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.9E-13 4E-18 92.1 12.0 88 189-277 2-97 (98)
155 cd05731 Ig3_L1-CAM_like Third 99.5 3.3E-14 7.2E-19 91.7 8.1 69 207-278 1-69 (71)
156 cd05874 Ig6_NrCAM Sixth immuno 99.5 4.9E-14 1.1E-18 91.7 8.7 67 207-273 1-71 (77)
157 cd05875 Ig6_hNeurofascin_like 99.5 6.3E-14 1.4E-18 91.2 9.1 68 207-274 1-72 (77)
158 cd05756 Ig1_IL1R_like First im 99.5 3.8E-14 8.3E-19 95.8 8.3 79 198-278 8-93 (94)
159 cd05749 Ig2_Tyro3_like Second 99.5 4.4E-14 9.5E-19 92.3 8.3 62 1-69 13-75 (81)
160 cd05722 Ig1_Neogenin First imm 99.5 1.4E-13 3E-18 94.1 11.1 83 193-277 3-93 (95)
161 cd05758 Ig5_KIRREL3-like Fifth 99.5 9.7E-14 2.1E-18 95.4 10.0 73 1-73 16-97 (98)
162 cd05734 Ig7_DSCAM Seventh immu 99.5 4.6E-14 1E-18 92.9 8.0 69 4-74 1-78 (79)
163 cd05771 IgC_Tapasin_R Tapasin- 99.5 3.6E-13 7.9E-18 99.0 13.7 36 42-77 2-37 (139)
164 cd05726 Ig4_Robo Fhird immunog 99.5 8.2E-14 1.8E-18 94.2 9.2 74 204-280 1-82 (90)
165 KOG3515|consensus 99.5 1.3E-13 2.8E-18 122.9 13.0 319 1-344 22-412 (741)
166 cd05752 Ig1_FcgammaR_like Frst 99.5 8E-14 1.7E-18 90.6 8.4 73 190-273 1-74 (78)
167 cd05765 Ig_3 Subgroup of the i 99.5 1.1E-13 2.3E-18 91.9 9.2 75 204-278 1-80 (81)
168 cd04967 Ig1_Contactin First Ig 99.5 1.1E-13 2.4E-18 93.7 9.3 67 1-69 19-87 (91)
169 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.5E-13 3.2E-18 89.0 8.9 70 207-277 1-71 (74)
170 cd05729 Ig2_FGFR_like Second i 99.5 3.9E-13 8.5E-18 90.2 10.8 75 1-75 9-85 (85)
171 cd05895 Ig_Pro_neuregulin-1 Im 99.5 3E-13 6.4E-18 88.3 9.7 70 207-276 1-75 (76)
172 cd05873 Ig_Sema4D_like Immunog 99.5 4.3E-13 9.2E-18 88.3 9.6 61 1-64 11-71 (87)
173 cd05882 Ig1_Necl-1 First (N-te 99.5 4.2E-13 9E-18 90.7 9.3 73 1-74 12-94 (95)
174 cd05742 Ig1_VEGFR_like First i 99.5 3.8E-13 8.2E-18 89.6 8.5 75 204-278 1-82 (84)
175 cd05757 Ig2_IL1R_like Second i 99.5 4.8E-13 1E-17 89.8 8.9 72 1-75 10-86 (92)
176 cd05729 Ig2_FGFR_like Second i 99.4 3.3E-12 7.2E-17 85.6 11.8 80 199-278 4-84 (85)
177 cd05752 Ig1_FcgammaR_like Frst 99.4 2.9E-13 6.3E-18 87.9 6.3 53 1-63 15-68 (78)
178 cd05754 Ig3_Perlecan_like Thir 99.4 1.1E-12 2.3E-17 87.7 9.2 77 195-277 7-84 (85)
179 cd05882 Ig1_Necl-1 First (N-te 99.4 2.5E-12 5.4E-17 86.9 10.4 70 197-266 5-83 (95)
180 cd04979 Ig_Semaphorin_C Immuno 99.4 1.3E-12 2.7E-17 88.2 8.9 73 1-76 11-87 (89)
181 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 2.1E-12 4.6E-17 85.6 9.6 75 204-278 1-81 (84)
182 cd05754 Ig3_Perlecan_like Thir 99.4 1E-12 2.2E-17 87.8 8.0 68 1-73 16-84 (85)
183 cd07701 Ig1_Necl-3 First (N-te 99.4 1.8E-12 4E-17 88.0 9.2 74 1-75 12-95 (95)
184 cd05873 Ig_Sema4D_like Immunog 99.4 3.9E-12 8.4E-17 83.8 10.1 69 196-268 3-71 (87)
185 cd05734 Ig7_DSCAM Seventh immu 99.4 2.3E-12 4.9E-17 84.7 8.5 68 207-277 1-77 (79)
186 cd05757 Ig2_IL1R_like Second i 99.4 3.5E-12 7.6E-17 85.6 8.7 76 198-277 4-84 (92)
187 cd05727 Ig2_Contactin-2-like S 99.4 1.9E-12 4.1E-17 86.5 7.3 73 197-271 11-86 (96)
188 cd05727 Ig2_Contactin-2-like S 99.4 1.8E-12 3.9E-17 86.6 6.6 65 1-67 18-86 (96)
189 smart00408 IGc2 Immunoglobulin 99.4 5.2E-12 1.1E-16 79.3 8.6 62 1-65 2-63 (63)
190 cd07701 Ig1_Necl-3 First (N-te 99.4 1.2E-11 2.6E-16 83.9 10.5 80 197-277 5-93 (95)
191 cd05862 Ig1_VEGFR First immuno 99.4 5.4E-12 1.2E-16 84.0 8.6 76 1-76 1-85 (86)
192 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1E-11 2.2E-16 83.8 9.8 73 1-73 16-97 (98)
193 cd05753 Ig2_FcgammaR_like Seco 99.3 3.4E-12 7.4E-17 84.3 7.1 61 1-68 14-75 (83)
194 cd07690 Ig1_CD4 First immunogl 99.3 3.8E-12 8.1E-17 85.4 7.2 66 1-66 7-90 (94)
195 cd04979 Ig_Semaphorin_C Immuno 99.3 6.7E-12 1.4E-16 84.6 8.4 80 197-279 4-86 (89)
196 cd05885 Ig2_Necl-4 Second immu 99.3 7.2E-12 1.6E-16 80.6 8.0 64 3-67 1-69 (80)
197 PF00047 ig: Immunoglobulin do 99.3 4.1E-12 9E-17 79.9 5.7 60 1-60 1-64 (64)
198 cd05717 Ig1_Necl-1-3_like Firs 99.3 2E-11 4.4E-16 83.4 9.4 74 1-75 12-95 (95)
199 cd07690 Ig1_CD4 First immunogl 99.3 2E-11 4.4E-16 81.9 8.7 74 199-272 2-92 (94)
200 smart00408 IGc2 Immunoglobulin 99.3 2.6E-11 5.5E-16 76.1 8.2 63 203-269 1-63 (63)
201 cd05897 Ig2_IL1R2_like Second 99.3 2.8E-11 6.1E-16 81.0 8.1 67 1-67 10-81 (95)
202 cd05871 Ig_Semaphorin_classIII 99.3 5.5E-11 1.2E-15 79.9 9.3 72 1-76 11-89 (91)
203 cd05845 Ig2_L1-CAM_like Second 99.3 3E-11 6.5E-16 80.6 7.6 73 196-271 10-85 (95)
204 smart00410 IG_like Immunoglobu 99.3 1.9E-10 4E-15 77.1 11.6 75 1-75 9-85 (86)
205 smart00409 IG Immunoglobulin. 99.3 1.9E-10 4E-15 77.1 11.6 75 1-75 9-85 (86)
206 cd05860 Ig4_SCFR Fourth immuno 99.2 1.6E-10 3.4E-15 77.3 10.3 82 197-278 11-98 (101)
207 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 6.3E-11 1.4E-15 79.4 8.1 73 1-75 15-104 (104)
208 cd05753 Ig2_FcgammaR_like Seco 99.2 4.9E-11 1.1E-15 78.8 7.5 66 198-271 8-74 (83)
209 PF13895 Ig_2: Immunoglobulin 99.2 5.9E-11 1.3E-15 78.5 7.9 66 1-75 14-80 (80)
210 cd05860 Ig4_SCFR Fourth immuno 99.2 1.6E-10 3.4E-15 77.2 9.6 76 1-76 18-100 (101)
211 PF00047 ig: Immunoglobulin do 99.2 5.7E-11 1.2E-15 74.7 6.8 61 204-264 1-64 (64)
212 smart00409 IG Immunoglobulin. 99.2 7.7E-10 1.7E-14 74.0 12.7 81 198-278 3-84 (86)
213 smart00410 IG_like Immunoglobu 99.2 7.7E-10 1.7E-14 74.0 12.7 81 198-278 3-84 (86)
214 cd05717 Ig1_Necl-1-3_like Firs 99.2 4E-10 8.6E-15 77.0 10.7 80 197-277 5-93 (95)
215 cd05845 Ig2_L1-CAM_like Second 99.2 5.8E-11 1.3E-15 79.2 6.3 64 1-66 18-84 (95)
216 cd05885 Ig2_Necl-4 Second immu 99.2 1.5E-10 3.4E-15 74.5 7.9 64 206-271 1-69 (80)
217 cd05862 Ig1_VEGFR First immuno 99.2 2.3E-10 4.9E-15 76.1 8.1 75 204-278 1-83 (86)
218 cd05897 Ig2_IL1R2_like Second 99.2 1.5E-10 3.3E-15 77.5 7.2 74 199-273 5-83 (95)
219 cd05871 Ig_Semaphorin_classIII 99.2 2.4E-10 5.2E-15 76.8 8.2 77 198-279 5-88 (91)
220 PF13895 Ig_2: Immunoglobulin 99.1 2.7E-10 5.8E-15 75.3 8.0 76 190-277 2-78 (80)
221 cd05759 Ig2_KIRREL3-like Secon 99.1 5.1E-10 1.1E-14 74.1 9.2 65 3-67 1-72 (82)
222 cd05881 Ig1_Necl-2 First (N-te 99.1 1.5E-09 3.3E-14 72.8 9.9 63 1-63 12-84 (95)
223 cd05872 Ig_Sema4B_like Immunog 99.1 1.1E-09 2.4E-14 71.6 8.3 71 1-75 11-82 (85)
224 PHA03376 BARF1; Provisional 99.1 1.6E-08 3.5E-13 74.2 14.8 65 1-65 26-111 (221)
225 cd05759 Ig2_KIRREL3-like Secon 99.1 1.6E-09 3.4E-14 71.7 9.0 66 207-272 2-73 (82)
226 cd05714 Ig_CSPGs_LP Immunoglob 99.1 2E-09 4.3E-14 75.2 9.4 77 1-77 2-104 (106)
227 cd05881 Ig1_Necl-2 First (N-te 99.0 3.3E-09 7.1E-14 71.2 9.9 72 197-268 5-85 (95)
228 cd05877 Ig_LP_like Immunoglobu 99.0 1.7E-09 3.6E-14 75.6 8.6 77 1-77 2-104 (106)
229 cd05900 Ig_Aggrecan Immunoglob 99.0 2.5E-09 5.5E-14 74.4 9.4 77 1-77 2-110 (112)
230 cd05713 Ig_MOG_like Immunoglob 99.0 3.3E-09 7.1E-14 73.2 10.0 75 1-75 1-99 (100)
231 PF13927 Ig_3: Immunoglobulin 99.0 8.2E-10 1.8E-14 71.9 4.9 73 190-266 2-75 (75)
232 cd05883 Ig2_Necl-2 Second immu 99.0 1.1E-08 2.3E-13 66.2 9.4 74 3-76 1-80 (82)
233 cd04983 IgV_TCR_alpha_like Imm 99.0 6.7E-09 1.5E-13 73.0 9.0 64 1-64 13-93 (109)
234 cd05751 Ig1_LILRB1_like First 99.0 2.7E-09 5.9E-14 71.9 6.6 60 1-63 16-75 (91)
235 cd05751 Ig1_LILRB1_like First 98.9 3.9E-09 8.4E-14 71.2 7.3 74 190-268 3-76 (91)
236 cd05718 Ig1_PVR_like First imm 98.9 8.3E-09 1.8E-13 71.0 9.1 75 2-76 1-98 (98)
237 cd04983 IgV_TCR_alpha_like Imm 98.9 1.2E-08 2.6E-13 71.8 10.0 74 196-269 5-94 (109)
238 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.4E-08 3.1E-13 68.2 9.6 78 199-278 10-103 (104)
239 cd05878 Ig_Aggrecan_like Immun 98.9 1.2E-08 2.7E-13 71.2 9.8 77 1-77 2-108 (110)
240 cd05774 Ig_CEACAM_D1 First imm 98.9 1.6E-08 3.5E-13 69.5 8.9 72 1-74 13-104 (105)
241 cd05714 Ig_CSPGs_LP Immunoglob 98.9 3.1E-08 6.6E-13 69.1 10.2 39 293-331 66-104 (106)
242 cd05775 Ig_SLAM-CD84_like_N N- 98.9 9.4E-09 2E-13 70.1 7.4 75 1-75 4-96 (97)
243 cd05872 Ig_Sema4B_like Immunog 98.9 6.4E-09 1.4E-13 68.0 6.2 64 197-265 4-67 (85)
244 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.4E-08 3E-13 69.0 8.0 73 1-74 1-91 (92)
245 cd05899 IgV_TCR_beta Immunoglo 98.9 8.2E-09 1.8E-13 72.5 6.9 63 1-64 13-95 (110)
246 cd00099 IgV Immunoglobulin var 98.8 1.4E-08 3E-13 70.9 7.0 65 1-65 6-91 (105)
247 cd05761 Ig2_Necl-1-4_like Seco 98.8 5.7E-08 1.2E-12 64.0 9.2 64 3-66 1-70 (82)
248 cd05899 IgV_TCR_beta Immunoglo 98.8 3.4E-08 7.3E-13 69.4 8.6 73 196-269 5-96 (110)
249 cd00099 IgV Immunoglobulin var 98.8 3.5E-08 7.7E-13 68.8 8.4 70 200-269 2-91 (105)
250 cd04980 IgV_L_kappa Immunoglob 98.8 5E-08 1.1E-12 68.0 8.7 73 195-267 6-93 (106)
251 cd05755 Ig2_ICAM-1_like Second 98.8 5.1E-08 1.1E-12 65.8 8.1 74 198-271 10-88 (100)
252 cd07705 Ig2_Necl-1 Second immu 98.8 1.2E-07 2.5E-12 62.5 9.7 63 4-66 2-71 (83)
253 cd05902 Ig_Neurocan Immunoglob 98.8 7.3E-08 1.6E-12 66.8 8.9 77 1-77 2-108 (110)
254 cd05877 Ig_LP_like Immunoglobu 98.8 1.2E-07 2.7E-12 66.1 10.3 39 293-331 66-104 (106)
255 cd05901 Ig_Versican Immunoglob 98.8 1.5E-07 3.2E-12 65.3 10.1 77 1-77 2-115 (117)
256 cd05879 Ig_P0 Immunoglobulin ( 98.8 5E-08 1.1E-12 68.4 7.9 66 1-66 13-105 (116)
257 cd04980 IgV_L_kappa Immunoglob 98.7 3.8E-08 8.2E-13 68.7 7.0 63 1-63 15-93 (106)
258 cd05846 Ig1_MRC-OX-2_like Firs 98.7 5.7E-08 1.2E-12 66.4 7.7 75 1-75 1-96 (97)
259 cd05883 Ig2_Necl-2 Second immu 98.7 8E-08 1.7E-12 62.1 7.8 64 206-269 1-68 (82)
260 cd04982 IgV_TCR_gamma Immunogl 98.7 5.3E-08 1.2E-12 69.2 7.8 62 1-62 13-98 (116)
261 PF13927 Ig_3: Immunoglobulin 98.7 1.9E-08 4E-13 65.4 4.9 57 4-62 18-75 (75)
262 cd00098 IgC Immunoglobulin Con 98.7 4.4E-08 9.4E-13 66.9 6.9 65 1-65 13-86 (95)
263 cd04982 IgV_TCR_gamma Immunogl 98.7 1.1E-07 2.4E-12 67.5 9.0 72 196-267 5-99 (116)
264 cd05713 Ig_MOG_like Immunoglob 98.7 1.8E-07 3.9E-12 64.5 9.7 75 204-278 1-98 (100)
265 cd05774 Ig_CEACAM_D1 First imm 98.7 9.5E-08 2.1E-12 65.7 8.0 76 199-277 8-103 (105)
266 cd04984 IgV_L_lambda Immunoglo 98.7 8.1E-08 1.8E-12 65.9 7.7 63 1-63 6-85 (98)
267 cd07694 Ig2_CD4 Second immunog 98.7 3E-07 6.6E-12 59.2 9.0 71 1-76 14-86 (88)
268 cd05888 Ig1_Nectin-4_like Frst 98.7 3.2E-07 7E-12 63.0 9.6 74 2-75 1-99 (100)
269 cd05755 Ig2_ICAM-1_like Second 98.7 1.3E-07 2.8E-12 63.8 7.4 65 1-66 16-87 (100)
270 cd00098 IgC Immunoglobulin Con 98.7 1.1E-07 2.3E-12 65.0 6.9 69 202-270 11-87 (95)
271 cd05884 Ig2_Necl-3 Second immu 98.7 2.8E-07 6E-12 60.6 8.5 62 4-65 2-70 (83)
272 cd05880 Ig_EVA1 Immunoglobulin 98.6 1.7E-07 3.8E-12 66.1 8.0 65 1-65 13-103 (115)
273 cd05879 Ig_P0 Immunoglobulin ( 98.6 3.4E-07 7.5E-12 64.2 9.4 74 197-270 6-105 (116)
274 cd04984 IgV_L_lambda Immunoglo 98.6 2.5E-07 5.4E-12 63.5 8.4 68 200-267 2-85 (98)
275 cd05761 Ig2_Necl-1-4_like Seco 98.6 2.2E-07 4.8E-12 61.2 7.8 66 206-271 1-71 (82)
276 cd05718 Ig1_PVR_like First imm 98.6 4.9E-07 1.1E-11 62.1 9.7 74 205-278 1-96 (98)
277 cd05900 Ig_Aggrecan Immunoglob 98.6 4.1E-07 9E-12 63.3 9.3 76 203-278 1-107 (112)
278 cd05711 Ig_FcalphaRI Immunoglo 98.6 2.4E-07 5.1E-12 62.8 7.5 75 190-266 2-76 (94)
279 cd05880 Ig_EVA1 Immunoglobulin 98.6 4.9E-07 1.1E-11 63.8 8.8 74 197-270 6-104 (115)
280 cd07705 Ig2_Necl-1 Second immu 98.6 6.5E-07 1.4E-11 59.0 8.8 64 207-270 2-71 (83)
281 cd05741 Ig_CEACAM_D1_like Firs 98.6 3.8E-07 8.2E-12 61.8 7.8 66 204-270 1-82 (92)
282 cd05715 Ig_P0-like Immunoglobu 98.6 5.7E-07 1.2E-11 63.7 8.5 65 1-65 13-104 (116)
283 cd05884 Ig2_Necl-3 Second immu 98.6 6.6E-07 1.4E-11 58.8 8.1 64 207-270 2-71 (83)
284 cd05711 Ig_FcalphaRI Immunoglo 98.5 2.6E-07 5.6E-12 62.6 6.3 60 1-61 15-75 (94)
285 cd05775 Ig_SLAM-CD84_like_N N- 98.5 5E-07 1.1E-11 61.6 7.7 75 203-277 3-94 (97)
286 cd05886 Ig1_Nectin-1_like Firs 98.5 1.5E-06 3.3E-11 59.1 9.6 38 293-330 61-99 (99)
287 cd05886 Ig1_Nectin-1_like Firs 98.5 1E-06 2.3E-11 59.9 8.7 74 3-76 2-99 (99)
288 cd05901 Ig_Versican Immunoglob 98.5 1.1E-05 2.5E-10 56.0 13.6 39 293-331 77-115 (117)
289 cd05887 Ig1_Nectin-3_like Firs 98.5 1.2E-06 2.7E-11 58.9 8.6 75 2-76 1-96 (96)
290 PHA02987 Ig domain OX-2-like p 98.5 3.7E-06 8E-11 62.5 11.4 101 198-335 24-127 (189)
291 cd00096 Ig Immunoglobulin doma 98.5 1.1E-06 2.4E-11 56.1 8.0 61 4-64 1-66 (74)
292 cd05902 Ig_Neurocan Immunoglob 98.5 2.5E-06 5.5E-11 59.1 10.0 39 293-331 70-108 (110)
293 cd05878 Ig_Aggrecan_like Immun 98.5 1.9E-06 4.1E-11 60.2 9.3 76 203-278 1-105 (110)
294 cd05716 Ig_pIgR Immunoglobulin 98.5 8.9E-07 1.9E-11 60.8 7.5 64 1-64 7-87 (98)
295 cd07700 IgV_CD8_beta Immunoglo 98.5 6.5E-07 1.4E-11 62.4 6.6 62 1-62 6-93 (107)
296 PF07686 V-set: Immunoglobulin 98.4 1.4E-06 3.1E-11 61.6 8.4 75 1-75 16-114 (114)
297 PHA02987 Ig domain OX-2-like p 98.4 1.8E-06 3.9E-11 64.1 8.8 78 1-78 30-124 (189)
298 cd07706 IgV_TCR_delta Immunogl 98.4 1.1E-06 2.3E-11 62.5 6.9 63 1-63 14-94 (116)
299 cd05771 IgC_Tapasin_R Tapasin- 98.4 5.7E-07 1.2E-11 66.1 5.5 60 295-355 1-60 (139)
300 cd07706 IgV_TCR_delta Immunogl 98.4 2.5E-06 5.5E-11 60.5 8.6 72 196-267 6-94 (116)
301 cd05715 Ig_P0-like Immunoglobu 98.4 2.4E-06 5.2E-11 60.5 8.5 75 196-270 5-105 (116)
302 PF08205 C2-set_2: CD80-like C 98.4 1.6E-06 3.4E-11 58.3 7.1 68 204-271 14-87 (89)
303 cd05720 Ig_CD8_alpha Immunoglo 98.4 1.2E-06 2.6E-11 60.6 6.3 62 1-62 6-90 (104)
304 cd05889 Ig1_DNAM-1_like First 98.4 3.3E-06 7.1E-11 56.9 8.2 72 2-73 1-93 (96)
305 cd05888 Ig1_Nectin-4_like Frst 98.3 5E-06 1.1E-10 57.1 8.8 73 206-278 2-98 (100)
306 cd05716 Ig_pIgR Immunoglobulin 98.3 3.7E-06 8.1E-11 57.6 8.1 70 199-268 2-87 (98)
307 cd07698 IgC_MHC_I_alpha3 Class 98.3 4.5E-06 9.7E-11 56.4 7.9 67 204-270 14-85 (93)
308 smart00407 IGc1 Immunoglobulin 98.3 7.3E-06 1.6E-10 52.9 8.5 62 3-64 1-71 (75)
309 PF08205 C2-set_2: CD80-like C 98.3 2.6E-06 5.5E-11 57.3 6.6 66 1-66 14-86 (89)
310 cd00096 Ig Immunoglobulin doma 98.3 6.6E-06 1.4E-10 52.3 8.1 64 207-270 1-68 (74)
311 cd07694 Ig2_CD4 Second immunog 98.3 6.3E-06 1.4E-10 53.2 7.4 73 200-278 10-84 (88)
312 cd07700 IgV_CD8_beta Immunoglo 98.3 4.5E-06 9.7E-11 58.2 7.4 67 200-266 2-93 (107)
313 cd05720 Ig_CD8_alpha Immunoglo 98.3 5.7E-06 1.2E-10 57.3 7.6 67 200-266 2-90 (104)
314 cd05712 Ig_Siglec_N Immunoglob 98.2 1.5E-05 3.4E-10 56.7 9.5 63 1-63 14-102 (119)
315 PF07686 V-set: Immunoglobulin 98.2 1.5E-05 3.2E-10 56.3 9.5 72 196-267 8-101 (114)
316 cd05772 IgC_SIRP Signal-regula 98.2 2.9E-05 6.3E-10 54.0 10.4 70 200-270 17-94 (111)
317 smart00406 IGv Immunoglobulin 98.2 7E-06 1.5E-10 54.0 6.5 58 3-60 1-81 (81)
318 cd05846 Ig1_MRC-OX-2_like Firs 98.2 2.5E-05 5.4E-10 53.3 9.3 75 204-278 1-95 (97)
319 smart00407 IGc1 Immunoglobulin 98.2 1.8E-05 4E-10 51.0 8.1 63 207-269 2-72 (75)
320 cd05887 Ig1_Nectin-3_like Firs 98.2 3.7E-05 8E-10 51.8 9.6 74 205-278 1-94 (96)
321 cd05772 IgC_SIRP Signal-regula 98.2 3.1E-05 6.7E-10 53.9 9.5 63 1-64 21-92 (111)
322 cd05766 IgC_MHC_II_beta Class 98.1 3E-05 6.5E-10 52.3 8.8 72 202-273 12-88 (94)
323 cd07698 IgC_MHC_I_alpha3 Class 98.1 2.1E-05 4.6E-10 53.2 8.1 64 1-64 14-83 (93)
324 cd07703 Ig2_Nectin-2_like Seco 98.1 1.2E-05 2.7E-10 54.0 6.7 69 3-72 17-90 (95)
325 cd05766 IgC_MHC_II_beta Class 98.1 3.6E-05 7.9E-10 51.9 8.9 64 1-64 14-83 (94)
326 cd05712 Ig_Siglec_N Immunoglob 98.1 2.7E-05 5.9E-10 55.4 8.7 72 196-267 6-102 (119)
327 cd05847 IgC_CH2_IgE CH2 domain 98.1 1.7E-05 3.7E-10 53.4 6.8 70 203-272 13-90 (94)
328 cd05770 IgC_beta2m Class I maj 98.1 3.1E-05 6.7E-10 51.9 7.9 67 202-269 13-84 (93)
329 cd05847 IgC_CH2_IgE CH2 domain 98.1 3E-05 6.6E-10 52.2 7.9 65 2-66 15-88 (94)
330 cd04981 IgV_H Immunoglobulin ( 98.1 1.7E-05 3.7E-10 56.1 7.0 62 1-62 12-97 (117)
331 cd07699 IgC_L Immunoglobulin C 98.1 1.3E-05 2.8E-10 54.8 5.9 70 200-269 13-90 (100)
332 cd05719 Ig2_PVR_like Second im 98.0 2.7E-05 5.8E-10 52.5 7.2 65 2-67 16-85 (95)
333 PHA03376 BARF1; Provisional 98.0 5.6E-05 1.2E-09 56.0 9.1 80 198-277 20-119 (221)
334 cd05889 Ig1_DNAM-1_like First 98.0 8.7E-05 1.9E-09 50.0 9.3 74 205-278 1-94 (96)
335 cd05768 IgC_CH4 CH4 domain (fo 98.0 1.7E-05 3.7E-10 54.4 6.0 71 200-270 12-93 (102)
336 cd05767 IgC_MHC_II_alpha Class 98.0 5.1E-05 1.1E-09 51.0 8.2 65 202-269 13-85 (94)
337 cd04981 IgV_H Immunoglobulin ( 98.0 5.1E-05 1.1E-09 53.7 8.5 70 197-266 5-97 (117)
338 cd05719 Ig2_PVR_like Second im 98.0 7.8E-05 1.7E-09 50.3 9.0 66 205-273 16-87 (95)
339 cd07692 Ig_CD3_epsilon Immunog 98.0 1.8E-05 3.9E-10 47.9 4.6 50 1-63 7-56 (65)
340 cd05770 IgC_beta2m Class I maj 97.9 7.6E-05 1.7E-09 50.0 7.8 63 1-63 15-82 (93)
341 cd07699 IgC_L Immunoglobulin C 97.9 5.4E-05 1.2E-09 51.8 7.0 64 1-64 17-89 (100)
342 cd05769 IgC_TCR_beta T cell re 97.9 4.9E-05 1.1E-09 53.1 6.8 80 198-277 12-101 (115)
343 cd07696 IgC_CH3 CH3 domain (th 97.9 5.1E-05 1.1E-09 51.3 6.6 73 198-270 8-88 (96)
344 smart00406 IGv Immunoglobulin 97.9 7.6E-05 1.6E-09 49.0 7.1 58 206-263 1-80 (81)
345 KOG1480|consensus 97.9 3.2E-06 7E-11 75.4 0.4 171 89-272 33-210 (909)
346 cd07703 Ig2_Nectin-2_like Seco 97.9 0.0002 4.3E-09 48.2 8.8 65 206-273 17-87 (95)
347 PHA02633 hypothetical protein; 97.9 6.8E-05 1.5E-09 44.5 5.5 37 42-78 19-55 (63)
348 cd07692 Ig_CD3_epsilon Immunog 97.8 4.1E-05 9E-10 46.4 4.7 51 203-267 6-56 (65)
349 cd05768 IgC_CH4 CH4 domain (fo 97.8 7.2E-05 1.6E-09 51.3 6.1 64 1-64 16-91 (102)
350 PF07654 C1-set: Immunoglobuli 97.8 0.00013 2.9E-09 48.1 7.1 66 202-270 6-79 (83)
351 cd05767 IgC_MHC_II_alpha Class 97.8 0.00017 3.7E-09 48.5 7.7 61 1-64 15-84 (94)
352 cd07697 IgC_TCR_gamma T cell r 97.8 0.00015 3.3E-09 48.9 7.4 66 201-268 13-85 (96)
353 PF07654 C1-set: Immunoglobuli 97.8 0.00021 4.6E-09 47.1 7.5 65 1-65 8-78 (83)
354 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00022 4.8E-09 48.2 7.2 64 1-64 14-86 (96)
355 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.0002 4.3E-09 48.0 6.8 64 1-65 16-85 (97)
356 cd07697 IgC_TCR_gamma T cell r 97.7 0.00036 7.8E-09 47.0 7.6 59 2-63 17-84 (96)
357 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.0003 6.6E-09 43.0 6.2 49 204-266 6-54 (69)
358 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00017 3.6E-09 44.1 4.9 48 2-62 7-54 (69)
359 PF08204 V-set_CD47: CD47 immu 97.6 4.8E-05 1E-09 53.6 2.9 75 1-76 27-120 (130)
360 cd04985 IgC_CH1 CH1 domain (fi 97.6 0.00046 9.9E-09 46.6 7.5 66 203-269 15-88 (95)
361 PHA03273 envelope glycoprotein 97.6 0.0049 1.1E-07 52.7 14.7 78 41-120 198-280 (486)
362 cd07689 Ig2_VCAM-1 Second immu 97.6 0.00048 1E-08 45.9 7.1 69 201-269 12-87 (99)
363 cd07689 Ig2_VCAM-1 Second immu 97.6 0.00035 7.7E-09 46.5 6.4 62 1-63 15-85 (99)
364 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.00077 1.7E-08 45.2 8.2 70 198-269 10-85 (97)
365 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.0011 2.4E-08 45.6 8.5 67 197-264 6-93 (115)
366 cd05769 IgC_TCR_beta T cell re 97.5 0.00092 2E-08 46.8 8.1 67 2-68 19-96 (115)
367 PHA02633 hypothetical protein; 97.4 0.00058 1.3E-08 40.6 5.4 42 293-334 16-57 (63)
368 cd04986 IgC_CH2 CH2 domain (se 97.4 0.0008 1.7E-08 45.4 6.2 74 196-269 11-90 (99)
369 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0012 2.6E-08 45.5 7.0 59 1-60 13-93 (115)
370 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0016 3.5E-08 44.0 7.5 62 2-64 17-87 (95)
371 PHA03269 envelope glycoprotein 97.3 0.023 5.1E-07 48.9 15.7 206 39-267 287-513 (566)
372 PHA02982 hypothetical protein; 97.3 0.00096 2.1E-08 50.3 6.2 75 1-75 39-135 (251)
373 PHA02914 Immunoglobulin-like d 97.1 0.0081 1.7E-07 50.2 10.4 37 293-329 344-380 (500)
374 KOG1480|consensus 97.0 0.00026 5.6E-09 63.8 1.4 64 2-67 145-209 (909)
375 PF08204 V-set_CD47: CD47 immu 97.0 0.00052 1.1E-08 48.4 2.3 78 200-278 23-118 (130)
376 KOG4597|consensus 97.0 0.0035 7.7E-08 53.5 7.4 89 190-278 197-290 (560)
377 PHA03270 envelope glycoprotein 96.9 0.12 2.6E-06 44.1 15.9 77 42-120 183-264 (466)
378 PHA02982 hypothetical protein; 96.9 0.0031 6.7E-08 47.7 5.9 75 197-271 32-126 (251)
379 PHA03271 envelope glycoprotein 96.9 0.13 2.8E-06 43.7 15.5 80 40-122 206-292 (490)
380 PHA02914 Immunoglobulin-like d 96.8 0.17 3.8E-06 42.7 15.8 73 197-269 272-370 (500)
381 cd04986 IgC_CH2 CH2 domain (se 96.8 0.0046 1E-07 41.8 5.7 65 1-65 19-90 (99)
382 PF07354 Sp38: Zona-pellucida- 96.7 0.0033 7.1E-08 49.6 5.1 49 14-64 11-60 (271)
383 KOG4597|consensus 96.7 0.0025 5.5E-08 54.3 4.7 77 1-77 211-293 (560)
384 KOG0613|consensus 96.7 0.0027 5.8E-08 61.0 5.1 77 197-273 342-421 (1205)
385 PHA03042 CD47-like protein; Pr 96.5 0.02 4.3E-07 45.5 8.1 70 1-76 31-105 (286)
386 PF07354 Sp38: Zona-pellucida- 96.5 0.0045 9.8E-08 48.9 4.3 49 217-268 11-60 (271)
387 PF11465 Receptor_2B4: Natural 96.4 0.0062 1.3E-07 40.9 4.3 41 36-76 66-107 (108)
388 PHA03042 CD47-like protein; Pr 96.0 0.054 1.2E-06 43.2 8.3 70 202-278 29-103 (286)
389 PHA03283 envelope glycoprotein 95.8 0.18 3.9E-06 44.3 11.1 37 41-77 134-170 (542)
390 PHA03282 envelope glycoprotein 95.6 0.67 1.4E-05 40.2 13.4 38 287-324 325-363 (540)
391 PF05790 C2-set: Immunoglobuli 95.1 0.22 4.9E-06 32.2 7.4 51 16-75 27-78 (80)
392 TIGR00864 PCC polycystin catio 95.0 6.9 0.00015 42.7 24.9 127 197-335 1705-1869(2740)
393 PF11465 Receptor_2B4: Natural 94.8 0.091 2E-06 35.5 5.0 43 287-329 63-106 (108)
394 PHA03271 envelope glycoprotein 94.6 1.3 2.9E-05 37.9 12.2 115 1-119 260-387 (490)
395 PHA03269 envelope glycoprotein 94.2 1.7 3.6E-05 38.2 12.2 29 1-29 342-373 (566)
396 PF06328 Lep_receptor_Ig: Ig-l 94.1 0.73 1.6E-05 30.6 8.1 65 198-264 12-81 (89)
397 PF06328 Lep_receptor_Ig: Ig-l 93.9 0.42 9.1E-06 31.7 6.6 59 1-60 18-81 (89)
398 KOG0613|consensus 92.9 0.35 7.5E-06 47.4 6.8 130 197-333 237-431 (1205)
399 PHA02865 MHC-like TNF binding 92.6 0.48 1E-05 39.7 6.6 21 206-226 216-238 (338)
400 PHA02865 MHC-like TNF binding 92.4 0.55 1.2E-05 39.4 6.7 62 3-64 216-304 (338)
401 cd05890 Ig2_Nectin-1_like Seco 92.2 0.94 2E-05 30.1 6.2 67 4-73 23-96 (98)
402 PHA03270 envelope glycoprotein 92.1 1.2 2.6E-05 38.3 8.3 80 187-268 219-308 (466)
403 PHA03052 Hypothetical protein; 91.2 0.78 1.7E-05 28.0 4.6 35 197-231 5-42 (69)
404 PF02480 Herpes_gE: Alphaherpe 91.1 0.11 2.3E-06 45.9 1.4 36 42-77 90-126 (439)
405 TIGR00864 PCC polycystin catio 91.1 28 0.00061 38.4 24.8 67 49-116 1835-1903(2740)
406 KOG1026|consensus 90.8 0.89 1.9E-05 42.7 6.9 67 1-76 207-273 (774)
407 PF05790 C2-set: Immunoglobuli 90.4 3.4 7.3E-05 26.8 7.5 32 246-277 44-76 (80)
408 PHA03273 envelope glycoprotein 90.2 3.5 7.7E-05 36.0 9.4 79 187-267 235-324 (486)
409 KOG1026|consensus 89.6 0.096 2.1E-06 48.7 -0.2 125 199-333 202-366 (774)
410 PHA03281 envelope glycoprotein 89.3 4.9 0.00011 35.9 9.7 37 42-78 299-336 (642)
411 PF06832 BiPBP_C: Penicillin-B 89.0 3.1 6.6E-05 27.6 6.8 54 5-69 33-86 (89)
412 PF11141 DUF2914: Protein of u 88.0 4.6 9.9E-05 25.0 7.0 57 17-75 8-65 (66)
413 PF02124 Marek_A: Marek's dise 87.9 12 0.00025 29.4 14.0 60 208-267 93-160 (211)
414 PHA03286 envelope glycoprotein 85.6 14 0.0003 32.5 10.1 34 245-278 127-160 (492)
415 COG5475 Uncharacterized small 85.1 2.6 5.6E-05 24.5 3.9 36 289-326 12-47 (60)
416 cd05890 Ig2_Nectin-1_like Seco 84.7 4.7 0.0001 26.9 5.5 60 207-269 23-88 (98)
417 PHA03283 envelope glycoprotein 84.6 4.9 0.00011 35.8 7.2 46 293-338 132-177 (542)
418 PHA03112 IL-18 binding protein 84.5 2.2 4.8E-05 30.7 4.3 74 201-274 35-125 (141)
419 PF06832 BiPBP_C: Penicillin-B 81.3 13 0.00028 24.5 9.6 56 206-273 31-86 (89)
420 PHA03112 IL-18 binding protein 81.1 9.8 0.00021 27.5 6.4 66 1-66 38-121 (141)
421 PHA03282 envelope glycoprotein 81.0 5.2 0.00011 35.1 5.9 40 294-333 123-164 (540)
422 PHA03189 UL14 tegument protein 79.6 15 0.00033 30.3 7.8 29 41-70 134-163 (348)
423 PHA03240 envelope glycoprotein 79.5 8.7 0.00019 29.8 6.0 100 197-321 31-131 (258)
424 PHA03052 Hypothetical protein; 79.0 3.8 8.3E-05 25.2 3.3 28 1-28 12-42 (69)
425 PHA03189 UL14 tegument protein 76.0 22 0.00049 29.4 7.8 27 245-272 134-160 (348)
426 PF11049 KSHV_K1: Glycoprotein 75.3 2.3 5.1E-05 25.8 1.7 46 5-64 2-47 (71)
427 PF01688 Herpes_gI: Alphaherpe 71.5 12 0.00026 27.9 5.0 35 40-74 123-157 (161)
428 PF02480 Herpes_gE: Alphaherpe 67.5 2.2 4.8E-05 37.9 0.6 49 293-341 87-136 (439)
429 PHA03281 envelope glycoprotein 65.8 33 0.00071 31.1 7.2 40 294-333 297-337 (642)
430 PHA03286 envelope glycoprotein 64.9 33 0.00071 30.3 6.9 40 293-332 125-165 (492)
431 PF03921 ICAM_N: Intercellular 64.8 39 0.00085 22.5 10.5 82 193-282 7-88 (91)
432 PHA03240 envelope glycoprotein 59.0 14 0.00031 28.7 3.4 20 40-59 104-123 (258)
433 PF00801 PKD: PKD domain; Int 51.4 55 0.0012 20.1 5.9 28 200-227 7-34 (69)
434 PF03174 CHB_HEX_C: Chitobiase 50.4 53 0.0011 20.8 4.7 60 200-273 11-70 (75)
435 KOG0200|consensus 50.2 2.3E+02 0.005 26.9 13.4 32 242-273 114-145 (609)
436 PF02440 Adeno_E3_CR1: Adenovi 49.0 37 0.00081 20.8 3.5 54 201-258 2-63 (63)
437 PHA03290 envelope glycoprotein 48.2 53 0.0011 27.7 5.3 36 40-75 128-163 (357)
438 PHA03289 envelope glycoprotein 48.1 41 0.00089 28.1 4.6 35 41-75 122-156 (352)
439 PF09926 DUF2158: Uncharacteri 47.4 36 0.00079 20.0 3.2 35 289-323 8-45 (53)
440 PHA03291 envelope glycoprotein 45.7 1.2E+02 0.0027 25.9 7.0 43 293-335 127-170 (401)
441 PF01688 Herpes_gI: Alphaherpe 44.7 57 0.0012 24.5 4.6 38 293-330 122-159 (161)
442 PHA03292 envelope glycoprotein 44.4 43 0.00092 28.8 4.3 35 41-75 128-162 (413)
443 PHA03292 envelope glycoprotein 44.1 1.4E+02 0.0031 25.9 7.2 42 293-334 126-167 (413)
444 PHA03290 envelope glycoprotein 40.8 78 0.0017 26.8 5.2 44 293-336 127-170 (357)
445 KOG3611|consensus 36.9 82 0.0018 30.5 5.5 70 4-76 572-648 (737)
446 PHA03291 envelope glycoprotein 34.6 97 0.0021 26.5 4.9 37 40-76 128-164 (401)
447 PF15096 G6B: G6B family 31.1 60 0.0013 24.7 2.9 38 302-342 81-118 (224)
448 PF07705 CARDB: CARDB; InterP 30.9 1.6E+02 0.0035 19.4 6.3 27 1-27 18-49 (101)
449 COG4953 PbpC Membrane carboxyp 29.4 1.5E+02 0.0033 28.1 5.6 53 4-67 672-724 (733)
450 PF02124 Marek_A: Marek's dise 29.1 3E+02 0.0064 21.9 13.8 49 220-268 8-63 (211)
451 PHA03289 envelope glycoprotein 27.8 1.6E+02 0.0034 24.9 5.0 40 294-333 121-160 (352)
452 PF03921 ICAM_N: Intercellular 27.3 2E+02 0.0043 19.3 10.6 71 1-79 18-89 (91)
453 PF05955 Herpes_gp2: Equine he 26.1 3E+02 0.0065 21.0 5.8 58 7-64 113-179 (226)
454 PF05955 Herpes_gp2: Equine he 25.8 2.3E+02 0.0049 21.7 5.0 59 210-268 113-179 (226)
455 PF13220 DUF4028: Protein of u 20.2 99 0.0022 17.9 1.8 19 302-320 5-23 (65)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2e-39 Score=291.79 Aligned_cols=324 Identities=24% Similarity=0.359 Sum_probs=238.9
Q ss_pred ceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEE-EEEEEecc-
Q psy12422 3 NVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETN-CVVIVESE- 78 (356)
Q Consensus 3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~- 78 (356)
.|.|.|.+.|+|.|+++|+|||..+.... .......| +|.|.+.. ..|.|.|+|.|+|..|.+.+. +.|.....
T Consensus 59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~ 136 (1051)
T KOG3513|consen 59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIP 136 (1051)
T ss_pred cEEEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeecccccc
Confidence 38999999999999999999999987532 22233355 67777776 899999999999999986432 22221100
Q ss_pred ------------------------ccc-h---------------------------------------------------
Q psy12422 79 ------------------------EES-K--------------------------------------------------- 82 (356)
Q Consensus 79 ------------------------~~~-~--------------------------------------------------- 82 (356)
|.. +
T Consensus 137 ~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~ 216 (1051)
T KOG3513|consen 137 KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPS 216 (1051)
T ss_pred cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchh
Confidence 000 0
Q ss_pred ---------------------------hhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceE-
Q psy12422 83 ---------------------------EQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTT- 132 (356)
Q Consensus 83 ---------------------------~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~- 132 (356)
............|+.+.|+|-+- |.|.+.|.+.+++..............
T Consensus 217 ~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL 296 (1051)
T KOG3513|consen 217 TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVL 296 (1051)
T ss_pred hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEE
Confidence 00000122356899999999987 888999999998654433222221111
Q ss_pred ---EEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEE
Q psy12422 133 ---TQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDL 209 (356)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l 209 (356)
.....+.|.|.|.+.+..+. ......+.+ ..+|.+...+.+..+..|+++.|
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~--------------------~~~~~~v~v-----~a~P~w~~~~~d~~~~~gs~v~~ 351 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGS--------------------ATHSGHVTV-----YAPPYWLQKPQDTEADTGSNVTL 351 (1051)
T ss_pred EecccCcCCCeEEEEEEeccccc--------------------ceeeEEEEE-----ecCchhhcccceeEecCCCCeEE
Confidence 12445567777776554431 122333444 77899988999999999999999
Q ss_pred EEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCC-Cccc-
Q psy12422 210 SAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS-SNIL- 286 (356)
Q Consensus 210 ~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~-~~~~- 286 (356)
.|.+.|.|.|.++|++||.++....+ .......+ +|+|.+++.+|+|.|.|.|.|.+|...+++.|.+... |.+.
T Consensus 352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~ 429 (1051)
T KOG3513|consen 352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPL 429 (1051)
T ss_pred EEEecCCCCCceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCC
Confidence 99999999999999999999986554 22334444 8999999999999999999999999988888873322 1111
Q ss_pred ---------------------------eeEEeC--------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy12422 287 ---------------------------DLKYKN--------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 325 (356)
Q Consensus 287 ---------------------------~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 325 (356)
.++|.+ ..++|.|.+++++|+|.|+|.|+|..|.++..+
T Consensus 430 ~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~ 509 (1051)
T KOG3513|consen 430 NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG 509 (1051)
T ss_pred CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence 344443 447899999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCcccCCCCceeEeeC
Q psy12422 326 KLTVRSTPAANLGKSPSKESDKAPRFFAIVH 356 (356)
Q Consensus 326 ~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
.|.|+.++.|.. ++.+....++...++.|+
T Consensus 510 ~L~Vkd~tri~~-~P~~~~v~~g~~v~l~Ce 539 (1051)
T KOG3513|consen 510 NLIVKDATRITL-APSNTDVKVGESVTLTCE 539 (1051)
T ss_pred EEEEecCceEEe-ccchhhhccCceEEEEee
Confidence 999999999999 777778888998888874
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.1e-39 Score=291.55 Aligned_cols=306 Identities=25% Similarity=0.343 Sum_probs=228.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 80 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 80 (356)
|++|.|.|.+.|+|.|.|.|.|.|.....++......+. .|.|.+++.+|+|.|+|.|.|..|.......+.|..+|.
T Consensus 256 G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~ 333 (1051)
T KOG3513|consen 256 GQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPY 333 (1051)
T ss_pred CCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCch
Confidence 899999999999999999999977643333323333333 899999999999999999999999999999999987755
Q ss_pred chhhhhhcccccccCccceeeeccc--CCceeeecccccccCCcccc---CC---CCceEEEEeeccccccccccccCCC
Q psy12422 81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHT---DD---TGRTTTQMSTLSSNYSSSTNNATSP 152 (356)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
... ......+..|+.++|.|.+. |.|.+.|++++.++...... .. ......+...+++.|-|.+.+..+
T Consensus 334 w~~--~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G- 410 (1051)
T KOG3513|consen 334 WLQ--KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG- 410 (1051)
T ss_pred hhc--ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccc-
Confidence 433 45566788999999999998 88899999999887643321 11 111112233444555555433221
Q ss_pred ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC--CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422 153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL 230 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~ 230 (356)
......+|.|. ..+|.+...+ ....+..|.++.|.|.+.+.|.|.+.|.|++..+
T Consensus 411 -------------------~i~anA~L~V~----a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~ 467 (1051)
T KOG3513|consen 411 -------------------TIYANAELKVL----ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL 467 (1051)
T ss_pred -------------------eEeeeeEEEEE----ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence 11223333332 4556666555 3357888999999999999999999999988866
Q ss_pred cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------------
Q psy12422 231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------------ 286 (356)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------------ 286 (356)
..+.++.+..+ + +|.|.+++++|+|.|+|.|.|..|.++.+..|.....+.|.
T Consensus 468 ~~~~r~~i~ed-G--tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~ 544 (1051)
T KOG3513|consen 468 LQSGRIRILED-G--TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDP 544 (1051)
T ss_pred ccCceEEECCC-C--cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCC
Confidence 55665554333 3 79999999999999999999999999999888854444332
Q ss_pred ----eeEEeC--------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCC
Q psy12422 287 ----DLKYKN--------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337 (356)
Q Consensus 287 ----~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~ 337 (356)
.+.|.. +++.|+|.+++..|+|.|.|+|+-.+.+.++.+.|.|.++|.++-
T Consensus 545 ~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 545 SLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred CcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence 233321 225699999999999999999999999999999999999998664
No 3
>KOG4221|consensus
Probab=99.97 E-value=7e-30 Score=229.98 Aligned_cols=247 Identities=25% Similarity=0.426 Sum_probs=181.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce-eEEEEEEEEeccc
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIVESEE 79 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~v~~~~ 79 (356)
|+++.|.|.+.+.|.|.++|.||..++..+.+.+...+| .|.|..++..|.|.|+|.+++..-. .+..+.|+|...+
T Consensus 155 g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG--~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~ 232 (1381)
T KOG4221|consen 155 GQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG--ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP 232 (1381)
T ss_pred CCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC--cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc
Confidence 789999999999999999999999999877777777777 7999999999999999999987333 2456777777332
Q ss_pred cchh----hhhhcccccccCccceeeeccc--CCceeeecccccccCCccccC-CCCce----EEEEeeccccccccccc
Q psy12422 80 ESKE----QQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD-DTGRT----TTQMSTLSSNYSSSTNN 148 (356)
Q Consensus 80 ~~~~----~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 148 (356)
.... ........+.+|+++.|+|.+. |.|.+.|.+++..+....... ..+.. ......+++.|.|.+.+
T Consensus 233 ~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 233 GALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred ccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence 2221 1122345688999999999998 899999999887775442110 01011 11122334555555533
Q ss_pred cCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE
Q psy12422 149 ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228 (356)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~ 228 (356)
.. .......++.| ..+|.|...+.+....++.++.|.|.+.|.|.|.+.|+|||.
T Consensus 313 ~~--------------------D~idasaev~V-----~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd 367 (1381)
T KOG4221|consen 313 TN--------------------DSIDASAEVTV-----LAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGD 367 (1381)
T ss_pred CC--------------------cccccceEEEE-----EcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence 11 11223445555 566889888889999999999999999999999999999999
Q ss_pred EccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
.+...+.+.+...+ .|.|.-+-..|.|.|.|.+.|..|.+...+.+
T Consensus 368 ~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l 413 (1381)
T KOG4221|consen 368 RIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAGSAQAAAQL 413 (1381)
T ss_pred ccCcccceEecCCC---CcEEEEEecccchhhhhhhccCcccccchhhh
Confidence 88876554443332 28899999999999999999999977665554
No 4
>KOG4221|consensus
Probab=99.97 E-value=1.1e-28 Score=222.34 Aligned_cols=309 Identities=23% Similarity=0.377 Sum_probs=207.7
Q ss_pred CCceEEEEEecc--CCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCC-----CCCeEEEEEEEeC-Ccee-EE
Q psy12422 1 MQNVIKVKVGST--KPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKP-----EDSGEYKCVATNK-HGTD-ET 69 (356)
Q Consensus 1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~-----~D~G~Y~C~a~n~-~g~~-~~ 69 (356)
|..+.|.|.... .+.+.|.|.|||..+... .+.....+| +|.|.++.. -|.|.|+|.|.-. .|.. +.
T Consensus 54 ~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg--Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr 131 (1381)
T KOG4221|consen 54 GSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG--SLYISSVLASKHNKVDEGVYQCLATVEDVGSILSR 131 (1381)
T ss_pred ccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC--ceeEeeecccccccccCceEEEEEEccccceeecc
Confidence 457899999833 357899999999887642 333446666 677777665 7899999999765 4433 44
Q ss_pred EEEEEEeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCC--Cce--EEEEeecccccc
Q psy12422 70 NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDT--GRT--TTQMSTLSSNYS 143 (356)
Q Consensus 70 ~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ 143 (356)
.+.|.+..... .........+..|+.+.|.|.++ |.|.+.|.+++..+......... +.. ......+.+.|.
T Consensus 132 ~a~v~~a~~~~--f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yr 209 (1381)
T KOG4221|consen 132 TAKVALAGLAD--FALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYR 209 (1381)
T ss_pred eEEEEecccCc--cccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEE
Confidence 56666654322 22334455678899999999988 77789999998866544322111 111 111333344455
Q ss_pred ccccccCCCccceeeeeeccccCCCCCcccccceeeecCC-CCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEE
Q psy12422 144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP-DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS 222 (356)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~ 222 (356)
|...+. .....+...++.+.. ........|...+....+.+|+++.|.|.+.|.|.|.|.
T Consensus 210 c~vt~g-------------------~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~ 270 (1381)
T KOG4221|consen 210 CVVTGG-------------------ASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVK 270 (1381)
T ss_pred EEEecC-------------------CcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceE
Confidence 544322 222223444444431 111233346667788899999999999999999999999
Q ss_pred EEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc----------------
Q psy12422 223 WTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------- 286 (356)
Q Consensus 223 W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------- 286 (356)
|.+||..+..++ ..+.. .+...|.|.+++.+|+|.|+|+|.|......+.+.+++..+|.+.
T Consensus 271 Wlrng~~i~~ds-~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ 348 (1381)
T KOG4221|consen 271 WLRNGEKISVDS-YRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEF 348 (1381)
T ss_pred EeeCCeeeeecc-eEEEE-ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeE
Confidence 999999998766 33332 233589999999999999999999955544444444433223222
Q ss_pred ----------eeEEeC--------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422 287 ----------DLKYKN--------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334 (356)
Q Consensus 287 ----------~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 334 (356)
.+.|.+ ..+.|+|--+...|+|.|+|.|.|..|.+.+.+.|.|...|.
T Consensus 349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred eCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence 334433 223499999999999999999999999999998886666543
No 5
>KOG4222|consensus
Probab=99.96 E-value=1.4e-28 Score=220.48 Aligned_cols=302 Identities=24% Similarity=0.361 Sum_probs=209.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCe-EEEEEeeC--CCCCCeEEEEEEEeCCceeEEE-EEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGV-VSMEIIDC--KPEDSGEYKCVATNKHGTDETN-CVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~-~~L~i~~~--~~~D~G~Y~C~a~n~~g~~~~~-~~l 73 (356)
|+.++|.|.+.|.|+|+|+|||+|+.+... ..++...++. +-|++..- ...|.|.|.|.|.|..|.+.+. ..|
T Consensus 46 ~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L 125 (1281)
T KOG4222|consen 46 GEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASL 125 (1281)
T ss_pred CCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceE
Confidence 678999999999999999999999755432 2334455552 23333211 1239999999999999988654 444
Q ss_pred EEeccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCc--ccc--CCCCceEE--EEeeccccccc
Q psy12422 74 IVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYS--SHT--DDTGRTTT--QMSTLSSNYSS 144 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~--~~~--~~~~~~~~--~~~~~~~~~~~ 144 (356)
.+......+..... ...+..|+.+.++|.-. |.|.+.|.+++...... ... ...+...+ ....+.|.|.|
T Consensus 126 ~vavlrddfrv~pr-d~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~C 204 (1281)
T KOG4222|consen 126 IVAVLRDDFRVSPR-DVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYAC 204 (1281)
T ss_pred EEEEechhcccCcc-cccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeee
Confidence 44433333332222 25677899999999876 89999999998877611 111 11111111 12333444554
Q ss_pred cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEE
Q psy12422 145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT 224 (356)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~ 224 (356)
+.. +......+....+.+ ..+|.|...+.+..+..|..+.+.|.+.|.|.|.++|.
T Consensus 205 Vat-------------------NmvG~ReS~~A~lsv-----~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk 260 (1281)
T KOG4222|consen 205 VAT-------------------NMVGERESIPARLSV-----QEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK 260 (1281)
T ss_pred eec-------------------ccccccccccceeee-----ccCCccccccccceeecccccccccccCCCCCCceeee
Confidence 443 333344445555555 77899999999999999999999999999999999999
Q ss_pred ECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------
Q psy12422 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------ 286 (356)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------ 286 (356)
+++..++.. ++.+..+.. +|.|.+++..|.|.|.|.|.|.+|...+...+++..++...
T Consensus 261 k~~~~~P~~-ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc 337 (1281)
T KOG4222|consen 261 KDDPSLPRS-RYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPC 337 (1281)
T ss_pred ccCCCCCcc-ceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeee
Confidence 988777654 334444433 89999999999999999999999998887777733322211
Q ss_pred --------eeEEeC----------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422 287 --------DLKYKN----------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330 (356)
Q Consensus 287 --------~~~~~~----------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 330 (356)
.+.|.+ ..+.|+|.+++..|.|.|.|...+..|+......|.+.
T Consensus 338 ~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 338 ETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred ecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence 112211 23589999999999999999999998887665555443
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=3.1e-27 Score=197.85 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=157.3
Q ss_pred CCceEEEEEe-----ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVG-----STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~-----~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
||.+.|.|.+ .|.|.+.++|+|+|.... ......++. .|.|.++..+|+|.|+|.++|..|....++.|.|
T Consensus 41 ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V 116 (326)
T PHA02785 41 NEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS-NMLILNPTQSDSGIYICITKNETYCDMMSLNLTI 116 (326)
T ss_pred CCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc-eEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence 7899999997 689999999999985422 223333443 5789999999999999999999988888888888
Q ss_pred eccccchhhhhhcccccccCccceeeec-------ccCCceeeecccccccCCccccCC-CCc--eEEEEeecccccccc
Q psy12422 76 ESEEESKEQQELAHNFLYSGDRKYIEKH-------IRPAPAIITTRQEIKSSYSSHTDD-TGR--TTTQMSTLSSNYSSS 145 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~-------~~p~p~i~w~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 145 (356)
.............+..+.+|..+.+.|. ..|.|.+.|+++.. ......... .+. .......+.|.|.|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~ 195 (326)
T PHA02785 117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCV 195 (326)
T ss_pred EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEE
Confidence 6543211111122344678999999997 23778899986432 111100000 111 111233444555555
Q ss_pred ccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC---eEE
Q psy12422 146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP---RVS 222 (356)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i~ 222 (356)
+.+.. +...........+.+. ....||.+. .+....+..|++++|.|.+.|.|++ .+.
T Consensus 196 ~~n~~----------------g~~~~~~t~~v~l~V~--~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~ 256 (326)
T PHA02785 196 LKYIY----------------GDKTYNVTRIVKLEVR--DRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVF 256 (326)
T ss_pred EEecc----------------CCEEEeEEEEEEEEEe--ccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEE
Confidence 43322 2111111111222221 123455543 3456778889999999999998864 799
Q ss_pred EEECCEEccCCC-----ceeEEE-----e---CCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 223 WTKNGQPLNSSN-----ILDLKY-----K---NGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 223 W~~~g~~~~~~~-----~~~~~~-----~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
|++||..+...+ ++.... + .....|+|.+++.+|+|.|+|.|.|..|...
T Consensus 257 W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 257 WISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 999999885431 111111 0 0135899999999999999999999886443
No 7
>KOG4222|consensus
Probab=99.95 E-value=2.4e-27 Score=212.58 Aligned_cols=304 Identities=23% Similarity=0.328 Sum_probs=216.3
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCCEEccc--CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEEe
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~ 76 (356)
||.++|.|.- .|+|.|.+.|.|||+++.. .......++| .|.|.+++..|+|.|.|.+.|..|..++. ++|.|.
T Consensus 146 ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 146 GEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred cceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 7899999987 8999999999999999973 3344456677 79999999999999999999999987654 777777
Q ss_pred ccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCC----CceEEEEeeccccccccccccC
Q psy12422 77 SEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDT----GRTTTQMSTLSSNYSSSTNNAT 150 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
..+-. ........+..|..+.+.|.+. |.|.+.|-+++...+........ .+....+..+.+.|.|...+.+
T Consensus 224 e~P~f--~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~v 301 (1281)
T KOG4222|consen 224 EKPWF--WKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLV 301 (1281)
T ss_pred cCCcc--ccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccc
Confidence 65322 2223445567788899999998 77779999977666544332222 1222234445566777664443
Q ss_pred CCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422 151 SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~ 230 (356)
...+ ....+.+ ..+|.|...+.+..+..|..++|.|.+.|+|+|.+.|.+.|..-
T Consensus 302 G~l~--------------------asa~ltV-----~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~ 356 (1281)
T KOG4222|consen 302 GGLE--------------------ASATLTV-----QAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQD 356 (1281)
T ss_pred cccc--------------------cccceEE-----ecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcce
Confidence 3221 2233344 67899999999999999999999999999999999999965432
Q ss_pred cC------CCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec-------CCCCccc-----------
Q psy12422 231 NS------SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP-------LNSSNIL----------- 286 (356)
Q Consensus 231 ~~------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p-------~~~~~~~----------- 286 (356)
-. ..+........ .+|+|.+++..|.|.|.|...+..|.......+.. -.++.|.
T Consensus 357 llf~~~p~~~~~r~svs~~-g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~ 435 (1281)
T KOG4222|consen 357 LLFSASPPSSNGRGSVSPT-GTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVG 435 (1281)
T ss_pred ecccCCCCCcCccceecCC-CCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccC
Confidence 11 11122222222 38999999999999999999888886543322220 0111111
Q ss_pred ---------------eeEEe---------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422 287 ---------------DLKYK---------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334 (356)
Q Consensus 287 ---------------~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 334 (356)
.+.|. .....|+|.++...|.|.|+|.|.+..|+..-+++|.|...-.
T Consensus 436 s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~ 513 (1281)
T KOG4222|consen 436 STASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGS 513 (1281)
T ss_pred cccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCc
Confidence 11111 1347899999999999999999999999999999999887643
No 8
>KOG4194|consensus
Probab=99.95 E-value=6.6e-27 Score=197.43 Aligned_cols=225 Identities=25% Similarity=0.461 Sum_probs=170.2
Q ss_pred CCceEEEEEecc--CCCCeeEEeeCCEEccc----C--CeeEEecC--------CeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGST--KPPPTVKWYKGNRELSK----R--DYSMSYSD--------GVVSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~----~--~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|++++|+|.+.+ .-+-.+.|-|+.+.++. + .+.....+ ....|.+.+|+..|.|.|+|.++|..
T Consensus 518 g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~F 597 (873)
T KOG4194|consen 518 GENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHF 597 (873)
T ss_pred ccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEeccc
Confidence 789999999955 34458999998775432 1 11111111 12379999999999999999999999
Q ss_pred ceeEE-EEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccc
Q psy12422 65 GTDET-NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYS 143 (356)
Q Consensus 65 g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (356)
|...+ .+++.|
T Consensus 598 GStysqk~KltV-------------------------------------------------------------------- 609 (873)
T KOG4194|consen 598 GSTYSQKAKLTV-------------------------------------------------------------------- 609 (873)
T ss_pred CcchhheeEEEe--------------------------------------------------------------------
Confidence 88743 456655
Q ss_pred ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEE
Q psy12422 144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW 223 (356)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W 223 (356)
...|.|...|.+.++..|+...|.|.+.|.|.|+|.|
T Consensus 610 -------------------------------------------~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIaw 646 (873)
T KOG4194|consen 610 -------------------------------------------NQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAW 646 (873)
T ss_pred -------------------------------------------eccCccccCcccceeecccceeeeeeccCCCCcceee
Confidence 3346677778888999999999999999999999999
Q ss_pred EECCEE-ccCCC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------
Q psy12422 224 TKNGQP-LNSSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL-------------- 286 (356)
Q Consensus 224 ~~~g~~-~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~-------------- 286 (356)
.|+|.. .+... +.+...+.. .+.|.++..+|+|.|+|.|.|.+|+.++.+.+++...|...
T Consensus 647 qkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~ 724 (873)
T KOG4194|consen 647 QKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETL 724 (873)
T ss_pred hhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceE
Confidence 997765 44322 222222333 78999999999999999999999999988888733222111
Q ss_pred -------------eeEEe---------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCC
Q psy12422 287 -------------DLKYK---------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338 (356)
Q Consensus 287 -------------~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~ 338 (356)
.+.|. .+...|.+++...+|+|.|+|+.+|..|......++.|...+.....
T Consensus 725 vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~S 804 (873)
T KOG4194|consen 725 VLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMS 804 (873)
T ss_pred EEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccc
Confidence 22332 25678999999999999999999999999888888888888877644
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.91 E-value=5.4e-23 Score=161.63 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=111.5
Q ss_pred CCceEEEEEeccCCC-----------CeeEEeeCCEEc--cc-CCee-------EEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422 1 MQNVIKVKVGSTKPP-----------PTVKWYKGNREL--SK-RDYS-------MSYSDGVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 1 g~~v~l~C~~~g~p~-----------~~v~W~k~g~~l--~~-~~~~-------~~~~~~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
||+|.|.|.+.+.|+ +.|.|+|++... .. +.+. ....+....|.|.+++.+|+|.|+|.
T Consensus 37 Ge~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~ 116 (227)
T PHA02826 37 GDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICT 116 (227)
T ss_pred CCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEE
Confidence 899999999977553 489999987652 11 1110 01111223899999999999999999
Q ss_pred EEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422 60 ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS 139 (356)
Q Consensus 60 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (356)
|+|..+.....+.|.|...
T Consensus 117 a~N~~~~~~~~i~L~V~~~------------------------------------------------------------- 135 (227)
T PHA02826 117 ISSGNICEESTIRLTFDSG------------------------------------------------------------- 135 (227)
T ss_pred EEECCcceEEEEEEEEecC-------------------------------------------------------------
Confidence 9998888777777766311
Q ss_pred ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEc-----
Q psy12422 140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK----- 214 (356)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~----- 214 (356)
+ .+..+.+|+.+.|.|.+.
T Consensus 136 --------------------------------------------------~------~~~~~~~G~~v~L~C~~~~~~~~ 159 (227)
T PHA02826 136 --------------------------------------------------T------INYQFNSGKDSKLHCYGTDGISS 159 (227)
T ss_pred --------------------------------------------------C------ccceEecCCCEEEEeeCCCCccc
Confidence 0 012356799999999985
Q ss_pred CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 215 g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
++|.|.++|+|||.++....++... .+..+|.|.+++.+|+|.|+|.|.....+.
T Consensus 160 ~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 160 TFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred cCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 3467899999999999866654433 333489999999999999999999875443
No 10
>KOG4194|consensus
Probab=99.89 E-value=1.4e-22 Score=171.63 Aligned_cols=164 Identities=27% Similarity=0.439 Sum_probs=135.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEE-cccC--Ce-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRE-LSKR--DY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~-l~~~--~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|+.+.|.|.+.|+|.|+|.|-|+|.. ++.. ++ .+...+. .+.|.+|..+|+|.|+|.|.|..|..++.+.|+|.
T Consensus 627 g~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~ 704 (873)
T KOG4194|consen 627 GQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL 704 (873)
T ss_pred ccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEe
Confidence 78899999999999999999998766 6642 22 2223333 78899999999999999999999999999999996
Q ss_pred ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422 77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI 156 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (356)
+.
T Consensus 705 e~------------------------------------------------------------------------------ 706 (873)
T KOG4194|consen 705 ET------------------------------------------------------------------------------ 706 (873)
T ss_pred cC------------------------------------------------------------------------------
Confidence 43
Q ss_pred eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEccCCCc
Q psy12422 157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLNSSNI 235 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~~~~~ 235 (356)
|.+..+..++.|..|+++.|.|.+++.|. |.+.|+|+++++....+
T Consensus 707 ---------------------------------p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r 753 (873)
T KOG4194|consen 707 ---------------------------------PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER 753 (873)
T ss_pred ---------------------------------CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence 34444466778999999999999999987 99999999988877666
Q ss_pred eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279 (356)
Q Consensus 236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p 279 (356)
..+...+ ..|++++...+|+|.|+|+..|..|.......+..
T Consensus 754 h~f~d~d--Qllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 754 HTFPDGD--QLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred ccCCCCC--eEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence 5554444 48999999999999999999999998877766653
No 11
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.82 E-value=2.8e-19 Score=122.24 Aligned_cols=94 Identities=21% Similarity=0.366 Sum_probs=82.8
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
|.|...+.+..+..|+.+.|.|.+.|.|+|.+.|+|+|..+....++.+......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 45666778889999999999999999999999999999999877777766666678999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q psy12422 270 TAETKCKLTPLNSS 283 (356)
Q Consensus 270 ~~~~~~~l~p~~~~ 283 (356)
.+.+++.|.+...|
T Consensus 81 ~~~~~~~l~V~~~P 94 (98)
T cd05762 81 SRQAQVNLTVVDKP 94 (98)
T ss_pred ceeEEEEEEEecCC
Confidence 99999999855443
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.80 E-value=5.7e-19 Score=120.75 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 79 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 79 (356)
|+++.|.|.+.|.|+|.+.|+|||++|..+ ++.+...+..+.|+|.++..+|+|.|+|.|.|..|...+++.|.|.+.|
T Consensus 15 G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 15 GESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred CCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 789999999999999999999999999754 4555556667799999999999999999999999999999999999876
Q ss_pred cch
Q psy12422 80 ESK 82 (356)
Q Consensus 80 ~~~ 82 (356)
.+|
T Consensus 95 ~pP 97 (98)
T cd05762 95 DPP 97 (98)
T ss_pred CCC
Confidence 543
No 13
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.79 E-value=9.5e-18 Score=140.82 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=117.8
Q ss_pred ccccCccceeeecc-----c--CCceeeecccccccCCccccCCCCc-eE--EEEeeccccccccccccCCCccceeeee
Q psy12422 91 FLYSGDRKYIEKHI-----R--PAPAIITTRQEIKSSYSSHTDDTGR-TT--TQMSTLSSNYSSSTNNATSPSKKITRRM 160 (356)
Q Consensus 91 ~~~~g~~~~l~c~~-----~--p~p~i~w~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
...+|+.+.+.|.. . |.+.+.|++++......... ..+. .. .....++|.|.|.+.+..
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~---------- 105 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPI-DNGSNMLILNPTQSDSGIYICITKNET---------- 105 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEc-cCCceEEEcccCcccCeEEEEEEECCC----------
Confidence 45679999999986 2 66789999986432111000 0111 00 112233444444443221
Q ss_pred eccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE-----EcCCCCCeEEEEECCEEccCCCc
Q psy12422 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV-----VKGDPEPRVSWTKNGQPLNSSNI 235 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~-----~~g~p~p~i~W~~~g~~~~~~~~ 235 (356)
.......++.+.. ..++.+...+....+.+|..+.|.|. ..+.|+|.|+|+++.. + ...+
T Consensus 106 ----------g~~~~s~~L~V~~---~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r 170 (326)
T PHA02785 106 ----------YCDMMSLNLTIVS---VSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKR 170 (326)
T ss_pred ----------cceEEEEEEEEEe---cCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcc
Confidence 1111222333211 11222222233456779999999997 2467899999988653 2 2222
Q ss_pred eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE----EEEec---CCCCccc----------------------
Q psy12422 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK----CKLTP---LNSSNIL---------------------- 286 (356)
Q Consensus 236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~----~~l~p---~~~~~~~---------------------- 286 (356)
+.. .. ...|.|.+++.+|+|.|+|.|.|..|..... +.+.+ ..+|.+.
T Consensus 171 ~~~-~~--~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~ 247 (326)
T PHA02785 171 LKQ-RT--PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLR 247 (326)
T ss_pred eEe-cC--CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECC
Confidence 221 11 2489999999999999999999998875432 22221 1111000
Q ss_pred ------eeEEeCC------------------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy12422 287 ------DLKYKNG------------------------------VASLQIQEVFPEDEGVYVCTATNSLGTAET 323 (356)
Q Consensus 287 ------~~~~~~~------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 323 (356)
.+.|..+ ...|+|.+|+.+|+|.|+|.|.|..|....
T Consensus 248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 2333221 247999999999999999999999855444
No 14
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.78 E-value=1.2e-18 Score=111.93 Aligned_cols=73 Identities=30% Similarity=0.495 Sum_probs=63.3
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.|+|+|++..+..+.+.....++ +|.|.+++.+|+|.|+|.|.|..|.+.+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999988655433334445 7999999999999999999999999999988864
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.78 E-value=1.2e-18 Score=113.16 Aligned_cols=73 Identities=29% Similarity=0.445 Sum_probs=63.6
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.|+|+|+|.++..........++ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 2 G~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 789999999999999999999999998765433333444 8999999999999999999999999999888865
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.78 E-value=7.1e-18 Score=114.61 Aligned_cols=90 Identities=30% Similarity=0.491 Sum_probs=79.8
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
||.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+......+.|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 57777788889999999999999999999999999999999877666666555556799999999999999999999999
Q ss_pred CceEEEEEEe
Q psy12422 269 GTAETKCKLT 278 (356)
Q Consensus 269 g~~~~~~~l~ 278 (356)
|....++.|+
T Consensus 83 G~~~~~~~l~ 92 (92)
T cd05747 83 GKQEAQFTLT 92 (92)
T ss_pred CCEeEEEEeC
Confidence 9999888763
No 17
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.78 E-value=2.4e-18 Score=110.92 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=61.3
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|.|.|.+.|.|.|.|+|||||+.+.. .++.+.. .++..+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 68999999999999999999999873 2333333 345568999999999999999999999999999988875
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=3.6e-18 Score=116.79 Aligned_cols=76 Identities=22% Similarity=0.396 Sum_probs=64.2
Q ss_pred CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEecC------CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSYSD------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|+++.|.|.+.| .|+|.+.|+|||.+|........... ....|.|..++.+|+|.|+|.|.|..|.++..+.|
T Consensus 18 G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L 97 (101)
T cd04975 18 GENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFEL 97 (101)
T ss_pred CCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence 789999999999 89999999999999975433222222 13589999999999999999999999999999998
Q ss_pred EEe
Q psy12422 74 IVE 76 (356)
Q Consensus 74 ~v~ 76 (356)
.|.
T Consensus 98 ~V~ 100 (101)
T cd04975 98 YVN 100 (101)
T ss_pred EEE
Confidence 875
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.77 E-value=5.6e-18 Score=112.89 Aligned_cols=75 Identities=25% Similarity=0.363 Sum_probs=65.5
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|+|.++|+|+|+++... ++.+........|.|.++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus 10 G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 10 GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 789999999999999999999999999753 344445555678999999999999999999999999988888764
No 20
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.77 E-value=4.4e-18 Score=114.04 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=68.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-c---CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-S---DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
||+++|.|.+.|.|++.++|+|++..+... ++.+.. . .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 899999999999999999999999988643 343332 1 1225899999999999999999999999999999999
Q ss_pred Eeccccc
Q psy12422 75 VESEEES 81 (356)
Q Consensus 75 v~~~~~~ 81 (356)
|.++|.+
T Consensus 81 V~~~P~~ 87 (88)
T cd05735 81 VQEPPDP 87 (88)
T ss_pred EeCCCCC
Confidence 9987554
No 21
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.76 E-value=4.4e-18 Score=111.09 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=62.6
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.|+|+|||.++.... ......++ .|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7999999999999999999999999986532 12223334 7999999999999999999999999999988887
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.76 E-value=8.1e-18 Score=112.86 Aligned_cols=86 Identities=29% Similarity=0.534 Sum_probs=73.6
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
||.+...+.+..+.+|+.+.|.|.+.|+|.|.++|+|++..+....++ ...+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence 477777888889999999999999999999999999999877654332 2223 389999999999999999999999
Q ss_pred CceEEEEEEe
Q psy12422 269 GTAETKCKLT 278 (356)
Q Consensus 269 g~~~~~~~l~ 278 (356)
|.....+.|.
T Consensus 77 G~~~~~~~l~ 86 (88)
T cd05851 77 GKDKHQARVY 86 (88)
T ss_pred CceEEEEEEE
Confidence 9999888775
No 23
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.76 E-value=5.9e-18 Score=110.19 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|+++.|.|.+.|+|.|+|+|+|||+++... .......++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 789999999999999999999999998632 112223333 68999999999999999999999999999999873
No 24
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.76 E-value=5.2e-18 Score=109.53 Aligned_cols=72 Identities=28% Similarity=0.339 Sum_probs=60.6
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecC-CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|.|.|.+.|.|.|.|+|+|++.++... ++.+...+ +...|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 689999999999999999999999753 23333232 4457999999999999999999999999999988865
No 25
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.75 E-value=3.7e-17 Score=108.94 Aligned_cols=81 Identities=25% Similarity=0.476 Sum_probs=71.0
Q ss_pred ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++..+|+|.|+|.|.|..|.+.+++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999999764 3455555555679999999999999999999999999999888
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
|.
T Consensus 84 l~ 85 (86)
T cd05894 84 VK 85 (86)
T ss_pred EE
Confidence 74
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.75 E-value=3.1e-17 Score=111.36 Aligned_cols=83 Identities=36% Similarity=0.528 Sum_probs=72.3
Q ss_pred CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 274 (356)
|...++.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+... +....|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 4557899999999999999999999999999999987766655544 345689999999999999999999999999988
Q ss_pred EEEe
Q psy12422 275 CKLT 278 (356)
Q Consensus 275 ~~l~ 278 (356)
+.+.
T Consensus 88 ~~v~ 91 (92)
T cd05737 88 VTVS 91 (92)
T ss_pred EEEe
Confidence 8774
No 27
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.75 E-value=1.4e-17 Score=106.98 Aligned_cols=71 Identities=28% Similarity=0.491 Sum_probs=59.9
Q ss_pred ceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 3 NVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
+|.|.|.+.|.|.|.++|+|+|..+....+.....++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4899999999999999999999988755433333344 5788899999999999999999999999888864
No 28
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.75 E-value=1.3e-17 Score=114.34 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=64.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEec-------CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|+.+.|.|.+.|+|+|.++|||||++|..+....... ....+|+|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus 18 ~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l 97 (101)
T cd05859 18 HEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFAL 97 (101)
T ss_pred CCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEE
Confidence 5789999999999999999999999997654322211 223589999999999999999999999999999998
Q ss_pred EEe
Q psy12422 74 IVE 76 (356)
Q Consensus 74 ~v~ 76 (356)
.|.
T Consensus 98 ~V~ 100 (101)
T cd05859 98 QIQ 100 (101)
T ss_pred EEE
Confidence 875
No 29
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.75 E-value=9.5e-18 Score=104.91 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=56.7
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
++|.|.+.|.|+|.++|||||+++... .....|.|.++..+|+|.|+|.|.|..|..++++.+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999999632 122389999999999999999999999988777777653
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.74 E-value=2.6e-17 Score=107.01 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=63.5
Q ss_pred ceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 3 NVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
++.|.|.+.|.|.|.+.|+|+|..+... ++.+...+....|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 4789999999999999999999998543 444555566779999999999999999999999999998888765
No 31
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.74 E-value=3.4e-17 Score=111.30 Aligned_cols=89 Identities=42% Similarity=0.736 Sum_probs=82.5
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+....++.+......++|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 45667778899999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred ceEEEEEEe
Q psy12422 270 TAETKCKLT 278 (356)
Q Consensus 270 ~~~~~~~l~ 278 (356)
....++.|.
T Consensus 81 ~~~~~~~l~ 89 (90)
T PF07679_consen 81 EATASVNLT 89 (90)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999988874
No 32
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=2.1e-17 Score=107.04 Aligned_cols=73 Identities=30% Similarity=0.520 Sum_probs=63.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.++|+|++..+....+.....++ +|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999998765433333444 7999999999999999999999999999888865
No 33
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.74 E-value=4.8e-17 Score=111.25 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=69.0
Q ss_pred CceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 197 TDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
..+.+.+|+++.|.|.+.| .|+|.+.|+|||.++.......+.... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4568999999999999999 888999999999999865544333221 1468999999999999999999999999
Q ss_pred eEEEEEEe
Q psy12422 271 AETKCKLT 278 (356)
Q Consensus 271 ~~~~~~l~ 278 (356)
...++.|.
T Consensus 91 ~~~t~~L~ 98 (101)
T cd04975 91 KSLTFELY 98 (101)
T ss_pred EEEEEEEE
Confidence 98888775
No 34
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.73 E-value=3.7e-17 Score=106.04 Aligned_cols=72 Identities=29% Similarity=0.358 Sum_probs=60.8
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|.|.|.+.|.|.|.|.|+|+|..+... ++.+.. ..+..+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 589999999999999999999999743 333332 345568999999999999999999999999999888865
No 35
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.73 E-value=2.3e-17 Score=108.17 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|+++.|.|.+.|.|.|.|+|+++|.++...............|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 7999999999999999999999999986543211122222379999999999999999999999999999888873
No 36
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.73 E-value=3.5e-17 Score=106.89 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=57.5
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE--EEEEEEe
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVE 76 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~v~ 76 (356)
|+|.|.+.|.|.|.|+|||+|.++...........+...|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 689999999999999999999998654322222222338999999999999999999999998754 4555554
No 37
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.73 E-value=3.1e-17 Score=105.36 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=59.6
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
+.|.|.+.|.|.|.|.|+|++.++...+......+ .+|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNN--KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCC--CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 57999999999999999999988865443332233 38999999999999999999999999999888876
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.73 E-value=6.6e-17 Score=107.48 Aligned_cols=77 Identities=16% Similarity=0.327 Sum_probs=63.5
Q ss_pred CceEEEEEeccCCCC--eeEEeeCCEEcccC----CeeE-EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 2 QNVIKVKVGSTKPPP--TVKWYKGNRELSKR----DYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 2 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~----~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|+++|.|.+.|+|.| .++|+|||+++... ++.. .......+|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 689999999999987 58999999998642 2211 2222335899999999999999999999999999999999
Q ss_pred Eecc
Q psy12422 75 VESE 78 (356)
Q Consensus 75 v~~~ 78 (356)
|.++
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9865
No 39
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.73 E-value=1.6e-16 Score=107.45 Aligned_cols=84 Identities=21% Similarity=0.399 Sum_probs=70.4
Q ss_pred cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274 (356)
Q Consensus 195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 274 (356)
++.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|..|...++
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 34556699999999999999999999999999998865544333333445789999999999999999999999999988
Q ss_pred EEEe
Q psy12422 275 CKLT 278 (356)
Q Consensus 275 ~~l~ 278 (356)
+.|.
T Consensus 86 ~~L~ 89 (90)
T cd04972 86 VQVT 89 (90)
T ss_pred EEEe
Confidence 8774
No 40
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.73 E-value=5.5e-17 Score=110.14 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=64.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEec-CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|||+|.++... ++.+... +...+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus 16 G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred CCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 789999999999999999999999999754 3444433 34568999999999999999999999999988887764
No 41
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.72 E-value=5.9e-17 Score=108.66 Aligned_cols=73 Identities=30% Similarity=0.503 Sum_probs=62.8
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|+++.|.|.+.|.|.|.++|+|++.++.... .+...++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 16 G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 16 GQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGA--VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred CCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCC--EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 7899999999999999999999998886543 2333333 79999999999999999999999999999988873
No 42
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=1.1e-16 Score=103.06 Aligned_cols=72 Identities=25% Similarity=0.487 Sum_probs=60.9
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|.|.|.|+|+|..+... .++.+..+ .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 479999999999999999999998743 45544433 3345899999999999999999999999999988874
No 43
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.72 E-value=9.1e-17 Score=105.39 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=64.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.|+|+|++..+... ++.+...++...|+|.+++.+|+|.|+|.|.|..|...+...+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 789999999999999999999999888654 444555566678999999999999999999999999877766554
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.71 E-value=9.1e-17 Score=110.06 Aligned_cols=77 Identities=27% Similarity=0.425 Sum_probs=64.8
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
|+++.|.|.+.|.|.|.|.|+|+|..+...............|+|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 18 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 18 GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred CCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 78999999999999999999999999875422222233334799999999999999999999999999999998863
No 45
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.71 E-value=9.5e-17 Score=104.19 Aligned_cols=73 Identities=33% Similarity=0.590 Sum_probs=62.9
Q ss_pred CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+|+++.|.|.+.|+|.|.+.|+|+|..+....+.... .. .+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL-SS--GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc-cC--CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 6899999999999999999999999988765443322 22 3899999999999999999999999999988774
No 46
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.71 E-value=6.6e-17 Score=103.29 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=57.7
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|.|.|.+.|.|.|.|+|+|+|.++..........++ .|.|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG--YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 689999999999999999999998754332333343 79999999999999999999999999887766
No 47
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.71 E-value=8.5e-17 Score=103.87 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=57.1
Q ss_pred EEEEeccCCCCeeEEeeCCEEcccCCeeE---E---ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSM---S---YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 6 l~C~~~g~p~~~v~W~k~g~~l~~~~~~~---~---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|.|.+.|+|.|.|+|||||++|..+++.. . .......|.|.++..+|+|.|+|.|+|..|.+.+++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 68999999999999999999997654321 1 122345899999999999999999999999988877664
No 48
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.71 E-value=3.2e-16 Score=101.86 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=65.4
Q ss_pred eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
.+.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++..+|+|.|+|.|.|..|.+..++.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 3689999999999999999999999777777666666678999999999999999999999999999988774
No 49
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.70 E-value=2.4e-16 Score=106.56 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.++|+|+|..+..... ..........|+|.+++.+|.|.|+|.|.|..|...+.+.|.|
T Consensus 15 G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 15 GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred CCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 78999999999999999999999998865432 2233344568999999999999999999999999998888764
No 50
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.70 E-value=1.6e-16 Score=101.84 Aligned_cols=70 Identities=30% Similarity=0.461 Sum_probs=58.8
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
+.|.|.+.|.|+|.++|||||.++..+.. ....+ .+|.|.++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 57999999999999999999999976532 22223 389999999999999999999999988777777653
No 51
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=1.7e-16 Score=106.19 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=62.9
Q ss_pred CceEEEEEeccCCCC--eeEEeeCCEEcccCC----ee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 2 QNVIKVKVGSTKPPP--TVKWYKGNRELSKRD----YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 2 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~----~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|+++|.|.+.|.|.| .+.|+|||+++.... +. ........+|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 689999999999988 569999999986321 11 11222334899999999999999999999999999999999
Q ss_pred Eecc
Q psy12422 75 VESE 78 (356)
Q Consensus 75 v~~~ 78 (356)
|.++
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9875
No 52
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.9e-16 Score=101.78 Aligned_cols=72 Identities=29% Similarity=0.493 Sum_probs=62.5
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|.|.|.|.|+|++..+....++.+.. + .+|.|.+++.+|+|.|+|.|.|..|....+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~-~--g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD-D--GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC-C--CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 6789999999999999999999998887666554432 2 3799999999999999999999999999988874
No 53
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.70 E-value=4.6e-16 Score=106.75 Aligned_cols=89 Identities=22% Similarity=0.470 Sum_probs=70.4
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-----ceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-----ILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (356)
|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+.... ++........+.|.|.+++.+|+|.|+|.|
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A 82 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA 82 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence 556555555556668999999999999999999999987765332 222233334468999999999999999999
Q ss_pred EcCCCceEEEEEEe
Q psy12422 265 TNSLGTAETKCKLT 278 (356)
Q Consensus 265 ~n~~g~~~~~~~l~ 278 (356)
.|..|.+..++.|.
T Consensus 83 ~N~~G~~~~~~~l~ 96 (97)
T cd05869 83 SNTIGQDSQSMYLE 96 (97)
T ss_pred ecCCCCeeEEEEEE
Confidence 99999999988874
No 54
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.70 E-value=2.7e-16 Score=105.48 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=62.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.++|||+|.++...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 9 ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred CCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 789999999999999999999999998754321 222334457999999999999999999999999999888865
No 55
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.70 E-value=1.2e-16 Score=101.30 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=56.5
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
+.|.|.+.|.|.|.++|||||+++..... . ..+ ..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~-~~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-F-KRG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-E-ccC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 57999999999999999999999975432 2 222 37999999999999999999999998777666555
No 56
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.70 E-value=2.9e-16 Score=104.79 Aligned_cols=81 Identities=35% Similarity=0.637 Sum_probs=70.1
Q ss_pred ccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.. .++ .|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 345677899999999999999999999999999999876655433 333 7999999999999999999999999998
Q ss_pred EEEEe
Q psy12422 274 KCKLT 278 (356)
Q Consensus 274 ~~~l~ 278 (356)
++.|.
T Consensus 80 ~~~l~ 84 (85)
T cd05728 80 SAELA 84 (85)
T ss_pred EEEEE
Confidence 88774
No 57
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.70 E-value=4.9e-16 Score=106.82 Aligned_cols=89 Identities=26% Similarity=0.554 Sum_probs=70.1
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEccC-----CCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLNS-----SNILDLKYKNGVASLQIQEVFPEDEGVYV 261 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 261 (356)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|++ ++..+.. ..++......+...|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 355543 567889999999999999999999999999 4444432 12344433344568999999999999999
Q ss_pred EEEEcCCCceEEEEEEe
Q psy12422 262 CTATNSLGTAETKCKLT 278 (356)
Q Consensus 262 C~a~n~~g~~~~~~~l~ 278 (356)
|.|.|..|....++.|.
T Consensus 81 C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 81 CEAASRIGGHQKSMYLD 97 (98)
T ss_pred EEEeccCCcceeEEEEe
Confidence 99999999999888774
No 58
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.69 E-value=3.9e-16 Score=106.91 Aligned_cols=81 Identities=31% Similarity=0.560 Sum_probs=68.3
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 275 (356)
.+..+..|+++.|.|.+.|+|.|.+.|+++|..+... .++. .....+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 3457899999999999999999999999999988765 3332 223335799999999999999999999999999888
Q ss_pred EEec
Q psy12422 276 KLTP 279 (356)
Q Consensus 276 ~l~p 279 (356)
.|.+
T Consensus 89 ~L~V 92 (95)
T cd05730 89 HLKV 92 (95)
T ss_pred EEEE
Confidence 8864
No 59
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.69 E-value=1.7e-16 Score=101.58 Aligned_cols=69 Identities=32% Similarity=0.421 Sum_probs=59.2
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+|.|.+.|.|+|.+.|+|++..+...++... .++ .|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 58999999999999999999888876554443 333 7999999999999999999999999988888764
No 60
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.69 E-value=2.5e-16 Score=100.04 Aligned_cols=68 Identities=35% Similarity=0.490 Sum_probs=56.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|++|.|.|.+.|.|.|.|+|+|+|.++..... .. .+...|+|.++ .|+|.|+|.|.|..|...+++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~-~~--~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE-MP--VGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccc-ee--cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999998865432 11 22337889886 48999999999999998887765
No 61
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.69 E-value=2.8e-16 Score=106.61 Aligned_cols=75 Identities=20% Similarity=0.391 Sum_probs=61.1
Q ss_pred CCceEEEEEeccCCC-CeeEEee-CCEEccc-C-CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCC-ceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPP-PTVKWYK-GNRELSK-R-DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~-~~v~W~k-~g~~l~~-~-~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~ 74 (356)
|++++|.|.+.|.|. |.|+|++ ||+.+.. . ++.+.. .+...+|.|.+++.+|+|.|+|.|.|.. |..++++.|.
T Consensus 15 G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~ 94 (96)
T cd05865 15 GESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK 94 (96)
T ss_pred CCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence 789999999999995 7999998 8887754 3 222222 3334689999999999999999999996 8888888887
Q ss_pred E
Q psy12422 75 V 75 (356)
Q Consensus 75 v 75 (356)
|
T Consensus 95 v 95 (96)
T cd05865 95 I 95 (96)
T ss_pred E
Confidence 6
No 62
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=5.3e-16 Score=104.56 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=70.8
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
|+.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+...... ... ...|.|.+++.+|+|.|.|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--SMS--GAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE--EEe--CCEEEECCCCcccCEEEEEEEEECC
Confidence 345556667788999999999999999999999999988766544322 222 3489999999999999999999999
Q ss_pred CceEEEEEEe
Q psy12422 269 GTAETKCKLT 278 (356)
Q Consensus 269 g~~~~~~~l~ 278 (356)
|....+..|.
T Consensus 77 G~~~~~~~l~ 86 (88)
T cd04968 77 GKDTHQGRIY 86 (88)
T ss_pred CcEEEEEEEE
Confidence 9998888775
No 63
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.69 E-value=2.2e-16 Score=103.50 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=62.5
Q ss_pred CceEEEEEecc--CCCCeeEEeeCCEEccc--C--CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 2 QNVIKVKVGST--KPPPTVKWYKGNRELSK--R--DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 2 ~~v~l~C~~~g--~p~~~v~W~k~g~~l~~--~--~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|++.|.|.+.+ .+++.|.|+|||++|.. . ++.... ......|.|.+++.+|+|.|+|.|.|..+..++++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 68999999965 55789999999999962 2 222211 11223899999999999999999999999999999999
Q ss_pred Eeccc
Q psy12422 75 VESEE 79 (356)
Q Consensus 75 v~~~~ 79 (356)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98764
No 64
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.69 E-value=2.6e-16 Score=107.96 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=62.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|++++|.|.+.|.|.|.++|+++++.+... ++.+........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 17 g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 17 EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred CCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 689999999999999999999999877532 12222333446899999999999999999999999999988886
Q ss_pred E
Q psy12422 75 V 75 (356)
Q Consensus 75 v 75 (356)
|
T Consensus 97 v 97 (97)
T cd05869 97 V 97 (97)
T ss_pred C
Confidence 5
No 65
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.69 E-value=3.4e-16 Score=101.80 Aligned_cols=73 Identities=19% Similarity=0.476 Sum_probs=61.2
Q ss_pred CCceEEEEEeccCCCCeeEEee-CCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|++ ++..+..........++ +|.|.++..+|+|.|+|.|.|..|.++..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7999999999999999999997 67776654433334444 7999999999999999999999999988887764
No 66
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.69 E-value=5.9e-16 Score=103.89 Aligned_cols=84 Identities=25% Similarity=0.431 Sum_probs=69.6
Q ss_pred ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-
Q psy12422 194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA- 271 (356)
Q Consensus 194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~- 271 (356)
+.+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.....+....|.|.++..+|+|.|+|.|.|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 4456678999999999999999998 899998 5777766666666555666799999999999999999999999985
Q ss_pred EEEEEEe
Q psy12422 272 ETKCKLT 278 (356)
Q Consensus 272 ~~~~~l~ 278 (356)
.+++.|.
T Consensus 84 ~~~i~l~ 90 (92)
T cd05866 84 EATVVLE 90 (92)
T ss_pred EEEEEEE
Confidence 5555554
No 67
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.69 E-value=3.1e-16 Score=107.50 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=67.5
Q ss_pred ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe------CCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK------NGVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
...+..|+.+.|.|.+.|+|+|.+.|+|||.++........... ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56788899999999999999999999999999886543322211 123589999999999999999999999999
Q ss_pred EEEEEEe
Q psy12422 272 ETKCKLT 278 (356)
Q Consensus 272 ~~~~~l~ 278 (356)
..++.|.
T Consensus 92 ~~t~~l~ 98 (101)
T cd05859 92 SYTFALQ 98 (101)
T ss_pred EEEEEEE
Confidence 8887775
No 68
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.69 E-value=4.5e-16 Score=100.47 Aligned_cols=72 Identities=29% Similarity=0.526 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|.|.+.|+|++..+... .++.....+ +...|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 479999999999999999999998754 344443333 334799999999999999999999999999988774
No 69
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.68 E-value=7.2e-16 Score=104.59 Aligned_cols=84 Identities=21% Similarity=0.394 Sum_probs=66.6
Q ss_pred cCCceeecCCCeEEEEEEEcCCCC-CeEEEEE-CCEEccC-CCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCC-C
Q psy12422 195 KLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTK-NGQPLNS-SNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSL-G 269 (356)
Q Consensus 195 ~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~-~g~~~~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g 269 (356)
.|....+.+|+++.|.|.+.|.|. |.+.|++ +|..+.. ..++.... +...++|.|.+++.+|+|.|+|.|.|.. |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 345567899999999999999995 7999998 7876654 33333322 2234789999999999999999999997 8
Q ss_pred ceEEEEEEe
Q psy12422 270 TAETKCKLT 278 (356)
Q Consensus 270 ~~~~~~~l~ 278 (356)
...+++.|.
T Consensus 86 ~~~~s~~l~ 94 (96)
T cd05865 86 ESEATVNVK 94 (96)
T ss_pred cEEEEEEEE
Confidence 888888775
No 70
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.68 E-value=4.6e-16 Score=102.02 Aligned_cols=74 Identities=26% Similarity=0.471 Sum_probs=64.2
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
|+++.|.|.+.|.|.|.+.|++++..+....++......+...|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 78899999999999999999999988877666666666667899999999999999999999999987665443
No 71
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.68 E-value=2.2e-16 Score=98.76 Aligned_cols=64 Identities=28% Similarity=0.454 Sum_probs=55.1
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|+|.|.+.|+|||..+... .....|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 479999999999999999999988632 2234899999999999999999999999887776664
No 72
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.68 E-value=8.5e-16 Score=105.62 Aligned_cols=89 Identities=24% Similarity=0.481 Sum_probs=70.8
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-----ceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-----ILDLKYKNGVASLQIQEVFPEDEGVYVCT 263 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 263 (356)
+|.|. .+.+..+.+|+++.|.|.+.|+|.|.+.|++++..+.... ++........+.|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 35554 3456789999999999999999999999999986665322 22222233457899999999999999999
Q ss_pred EEcCCCceEEEEEEe
Q psy12422 264 ATNSLGTAETKCKLT 278 (356)
Q Consensus 264 a~n~~g~~~~~~~l~ 278 (356)
|.|..|....++.|.
T Consensus 81 a~N~~G~~~~s~~l~ 95 (96)
T cd05732 81 ASNRIGGDQQSMYLE 95 (96)
T ss_pred EEeCCCCcEEEEEEe
Confidence 999999999888774
No 73
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.68 E-value=4.5e-16 Score=103.84 Aligned_cols=72 Identities=29% Similarity=0.471 Sum_probs=62.3
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|+|+|.++..... +...++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 14 G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 14 GSSLRWECKASGNPRPAYRWLKNGQPLASENR-IEVEAG--DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CCcEEEEEEeeEeCCCEEEEEECCEECCCCCe-EEEeCC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999999999999999999999875442 223344 7999999999999999999999999988888764
No 74
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=6.5e-16 Score=104.98 Aligned_cols=75 Identities=35% Similarity=0.598 Sum_probs=68.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|+++|.++..+ ++.+...++..+|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 15 G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 15 GESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp TSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 799999999999999999999999999864 566667778889999999999999999999999999999988876
No 75
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.68 E-value=3.2e-16 Score=101.20 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=59.0
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|.|.|.+.|.|.|.+.|+|++.++...+.... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 57999999999999999999988865432222 22338999999999999999999999999988888876
No 76
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=9.2e-16 Score=100.10 Aligned_cols=73 Identities=27% Similarity=0.561 Sum_probs=61.2
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCce-eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|.|.|.++|+++|..+...... ...... ..|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 788999999999999999999999988754321 222223 3799999999999999999999999999888775
No 77
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.68 E-value=6.3e-16 Score=105.01 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=63.5
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|+++.|.|.+.|.|.|.+.|+|+|..+... ++.+.......+|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 18 G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 18 GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred CCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 789999999999999999999999998754 4444445556799999999999999999999999998887776
No 78
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.67 E-value=1.3e-15 Score=103.03 Aligned_cols=83 Identities=33% Similarity=0.501 Sum_probs=71.1
Q ss_pred CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 274 (356)
|..+++.+|+.+.|.|.+.|.|.|.+.|++++..+.....+...... ...+|.|.+++.+|+|.|+|.|.|..|.+..+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 45678999999999999999999999999999988776655444333 34589999999999999999999999999998
Q ss_pred EEEe
Q psy12422 275 CKLT 278 (356)
Q Consensus 275 ~~l~ 278 (356)
+.|.
T Consensus 88 ~~v~ 91 (92)
T cd05891 88 VTVS 91 (92)
T ss_pred EEEE
Confidence 8874
No 79
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.67 E-value=5.5e-16 Score=101.65 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=56.9
Q ss_pred EEEEeccCCCCeeEEeeCCEEcccCCee-EEe-------cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 6 KVKVGSTKPPPTVKWYKGNRELSKRDYS-MSY-------SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 6 l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~-------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|.|.+.|+|.|.|+|||||+++..+.+. ... ......|.|.+++.+|+|.|+|.|.|..|.+++++.++
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 7899999999999999999999765421 111 12345799999999999999999999999998887765
No 80
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.67 E-value=4.4e-16 Score=98.80 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
+.|.|.+.|.|+|+++|+|||.++..........++ +|.|.+++.+|+|.|+|.|+|..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 579999999999999999999998754322333333 799999999999999999999866555554443
No 81
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.67 E-value=5.6e-16 Score=104.78 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcc--------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELS--------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
|+++.|.|.+.|.|.|.+.|+|+|..+. ...+.....++ .|+|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG--DLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC--eEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 7899999999999999999999886531 11111222233 7999999999999999999999999999999
Q ss_pred EEEecc
Q psy12422 73 VIVESE 78 (356)
Q Consensus 73 l~v~~~ 78 (356)
|.|.+.
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 999864
No 82
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.67 E-value=1.9e-15 Score=101.29 Aligned_cols=80 Identities=25% Similarity=0.549 Sum_probs=67.2
Q ss_pred eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457889999999999999999999999999987654321 2223345689999999999999999999999999998877
Q ss_pred e
Q psy12422 278 T 278 (356)
Q Consensus 278 ~ 278 (356)
.
T Consensus 84 ~ 84 (85)
T cd05857 84 D 84 (85)
T ss_pred E
Confidence 4
No 83
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.67 E-value=1.1e-15 Score=100.28 Aligned_cols=71 Identities=24% Similarity=0.430 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-------CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 208 ~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
.|.|.+.|+|.|.++|+|||..+........... ...+.|.|.+++.+|+|.|+|.|.|..|.+..++.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999999999999999999987654332211 2246799999999999999999999999999988764
No 84
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.67 E-value=1.7e-15 Score=98.26 Aligned_cols=72 Identities=29% Similarity=0.459 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|.|.+.|+|+|..+... .++..... .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 479999999999999999999998743 34443332 3455799999999999999999999999999888774
No 85
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.67 E-value=2.3e-16 Score=106.43 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCC----EEcccC--Ce-eEE-------ecCCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGN----RELSKR--DY-SMS-------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g----~~l~~~--~~-~~~-------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
|++++|.|.+.|.|.|.|+|+|++ ..+... .+ ... ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 333211 11 111 1122347999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy12422 67 DETNCVVIVE 76 (356)
Q Consensus 67 ~~~~~~l~v~ 76 (356)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999998873
No 86
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=1.4e-15 Score=97.71 Aligned_cols=70 Identities=30% Similarity=0.588 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
++.|.|.+.|.|.|.++|+|+|..+.....+.....+ .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 4789999999999999999999988766655443332 588889999999999999999999999988874
No 87
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.67 E-value=2.7e-15 Score=118.24 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=85.8
Q ss_pred CceeecCCCeEEEEEEEcCCCC-----------CeEEEEECCEEcc--CCCce------e-EEEeCCEEEEEEccCCCCC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPE-----------PRVSWTKNGQPLN--SSNIL------D-LKYKNGVASLQIQEVFPED 256 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~-----------p~i~W~~~g~~~~--~~~~~------~-~~~~~~~~~L~i~~v~~~d 256 (356)
....+.+|+++.|.|.+.++|. +.+.|+|++.... ..... . .........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 3467889999999999987654 4799999876521 11000 0 0111223589999999999
Q ss_pred CeEEEEEEEcCCCceEEEEEEecCCCC-------------------------ccceeEEeC---------------CeEE
Q psy12422 257 EGVYVCTATNSLGTAETKCKLTPLNSS-------------------------NILDLKYKN---------------GVAS 296 (356)
Q Consensus 257 ~G~Y~C~a~n~~g~~~~~~~l~p~~~~-------------------------~~~~~~~~~---------------~~~~ 296 (356)
+|.|+|.|.|..+..+.++.|.....+ ....+.|.+ ++..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~ 189 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNST 189 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCE
Confidence 999999999999887776665411000 001233432 3357
Q ss_pred EEEecCCCCCCeEEEEEEEcCCcc
Q psy12422 297 LQIQEVFPEDEGVYVCTATNSLGT 320 (356)
Q Consensus 297 L~i~~v~~~d~G~Y~C~a~n~~g~ 320 (356)
|.|.+|+.+|+|.|+|+|+...+.
T Consensus 190 L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 190 LVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EEECcCCHHhCEEEEEEEEEeECC
Confidence 999999999999999999987543
No 88
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.67 E-value=6.6e-16 Score=100.08 Aligned_cols=70 Identities=26% Similarity=0.501 Sum_probs=56.4
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v 75 (356)
++|.|.+.|.|.|.|+|||++.++.. ..+.....++ .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 57999999999999999999998863 2222333334 69999999999999999999999985 45566665
No 89
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.66 E-value=1e-15 Score=98.83 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCCeEEEEECCEEccCCCceeEE---E--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK---Y--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 208 ~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~---~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
-|.|.+.|+|.|.|+|+|||.++......... . ....+.|.|.++..+|+|.|+|.|.|..|.+.+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999999999876543221 1 12346899999999999999999999999998887763
No 90
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.66 E-value=7.4e-16 Score=105.96 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=60.7
Q ss_pred CCceEEEEEeccCCCCeeEEee--CCEEccc------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYK--GNRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k--~g~~l~~------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
|++++|.|.+.|.|.|.|+||| +|..+.. .++.+....+..+|+|.+++.+|+|.|+|.|.|..|....++.
T Consensus 16 G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 95 (98)
T cd05870 16 NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 95 (98)
T ss_pred CCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEE
Confidence 7899999999999999999999 4554431 2333333345568999999999999999999999999988887
Q ss_pred EEE
Q psy12422 73 VIV 75 (356)
Q Consensus 73 l~v 75 (356)
|.|
T Consensus 96 l~~ 98 (98)
T cd05870 96 LDI 98 (98)
T ss_pred EeC
Confidence 764
No 91
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.66 E-value=2.1e-15 Score=101.03 Aligned_cols=80 Identities=28% Similarity=0.415 Sum_probs=66.0
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe--C--CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK--N--GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~--~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+... + ..++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888643 34433321 1 136899999999999999999999999999999998
Q ss_pred cCCCC
Q psy12422 279 PLNSS 283 (356)
Q Consensus 279 p~~~~ 283 (356)
+..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 66544
No 92
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.66 E-value=1.3e-15 Score=102.54 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v 75 (356)
|++|+|.|.+.|. .|.|.|||+|.++...+......+ .+|+|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 18 g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 18 NQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDN--RTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCC--CEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 7899999999999 999999999999876553332222 37999999999999999999999998654 566655
No 93
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.66 E-value=8.8e-16 Score=105.55 Aligned_cols=75 Identities=23% Similarity=0.449 Sum_probs=62.3
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|+++.|.|.+.|.|.|.+.|+|++..+... ++.+........|+|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 16 g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 16 LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred CCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 789999999999999999999998776532 22233334556899999999999999999999999998888776
Q ss_pred E
Q psy12422 75 V 75 (356)
Q Consensus 75 v 75 (356)
|
T Consensus 96 v 96 (96)
T cd05732 96 V 96 (96)
T ss_pred C
Confidence 4
No 94
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.66 E-value=2.4e-15 Score=102.15 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=63.1
Q ss_pred CeecccCCceeec---CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422 190 PQFANKLTDKTID---DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT 265 (356)
Q Consensus 190 p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 265 (356)
|.|...+.++.+. +|+.+.|.|.+.|+|.|.++|+|+|..+.......+....+ .|.|.++. .+|+|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 4455555554443 47899999999999999999999999987544333333343 78898885 699999999999
Q ss_pred cCCCceEE
Q psy12422 266 NSLGTAET 273 (356)
Q Consensus 266 n~~g~~~~ 273 (356)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99998754
No 95
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=1.2e-15 Score=102.72 Aligned_cols=73 Identities=29% Similarity=0.433 Sum_probs=61.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|+++.|.|.+.|.|.|.++|+|++..+..... ....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 16 g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 16 GQNVTLECFALGNPVPQIKWRKVDGSMPSSAE-ISMSGA--VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred CCcEEEEEEeeEeCCCEEEEEECCCcCCCccE-EEEeCC--EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 78999999999999999999998877654432 222333 89999999999999999999999999999888773
No 96
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.65 E-value=4.5e-15 Score=100.88 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=64.8
Q ss_pred CeecccCCceeecCC---CeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422 190 PQFANKLTDKTIDDG---QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT 265 (356)
Q Consensus 190 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 265 (356)
|.|...|.++.+.+| +.++|.|.+.|+|.|.++|++||..+...........++ .|.|.++. .+|+|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence 455556666666555 579999999999999999999999987543333333333 78898865 589999999999
Q ss_pred cCCCceEE-EEEE
Q psy12422 266 NSLGTAET-KCKL 277 (356)
Q Consensus 266 n~~g~~~~-~~~l 277 (356)
|..|.... .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99998764 4443
No 97
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.65 E-value=9.5e-16 Score=99.87 Aligned_cols=70 Identities=26% Similarity=0.410 Sum_probs=56.6
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEc-cc--C-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNREL-SK--R-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l-~~--~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
++|.|.+.|.|.|.|+|+|+|... +. . ++.+...++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 579999999999999999998643 22 1 222222233 7999999999999999999999999999988887
No 98
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.65 E-value=1.5e-15 Score=98.78 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=61.0
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|+|.|.|+|+++|.++..... .....+++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 67899999999999999999999999864322 11223333 789999999999999999999999999988875
No 99
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.65 E-value=1.7e-15 Score=102.49 Aligned_cols=75 Identities=25% Similarity=0.417 Sum_probs=62.8
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecC-CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|||+|..+... ++.....+ ...+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus 16 G~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 16 GKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred CCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 789999999999999999999999988654 33333333 3458999999999999999999999999988877754
No 100
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.65 E-value=8.6e-16 Score=102.41 Aligned_cols=74 Identities=28% Similarity=0.471 Sum_probs=61.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|.|.+.|+|+|..+...... ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 9 GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred CCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 789999999999999999999999988644321 22334468999999999999999999999999888877764
No 101
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=1.6e-15 Score=99.34 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=62.1
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|+|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 788999999999999999999999988755432 11222335899999999999999999999999999888875
No 102
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1.1e-15 Score=97.65 Aligned_cols=69 Identities=30% Similarity=0.608 Sum_probs=59.1
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|.|.+.|+|+|..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|....++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 4799999999999999999999887665544322 24899999999999999999999999999888763
No 103
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.64 E-value=2.7e-15 Score=100.71 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=59.5
Q ss_pred CCceEEEEEeccCCCCeeEEee-CCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v 75 (356)
|+++.|.|.+.|.|. .++||| +|.++... ++.+...+....|+|.+++.+|+|.|+|.|+|..|.. .+++.|.+
T Consensus 15 G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 15 GESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 789999999999998 899998 57777544 3444444445689999999999999999999999886 45566554
No 104
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.64 E-value=8.4e-15 Score=102.29 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=65.4
Q ss_pred CCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe----CCEEEEEEccCC-CCCCeEEEEEEEcCCCceEEEEE
Q psy12422 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK----NGVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
.|..++|.|.+.|.|+|.+.|++||..+... .++..... ...+.|+|.+++ .+|.|.|+|.|.|..|.+...+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4678999999999999999999999988643 23322211 113689999997 58999999999999999999999
Q ss_pred EecCCCC
Q psy12422 277 LTPLNSS 283 (356)
Q Consensus 277 l~p~~~~ 283 (356)
|.+...|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9876655
No 105
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=2.8e-15 Score=97.05 Aligned_cols=72 Identities=32% Similarity=0.511 Sum_probs=62.5
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+++.|.|.+.|.|.|.+.|++++..+....++.... . ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~-~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP-D--GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC-C--CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6889999999999999999999999887666554322 2 3799999999999999999999999999988774
No 106
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.64 E-value=4.9e-15 Score=99.69 Aligned_cols=73 Identities=26% Similarity=0.461 Sum_probs=61.6
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
.++.+.+|++++|.|.+.|. .|.+.|++++..+... +... ......|.|.+++++|+|.|.|.|.|..|....
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 56789999999999999999 9999999999987643 2322 233348999999999999999999999998655
No 107
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.64 E-value=3.2e-15 Score=104.39 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=64.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-cC---CeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-SD---GVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~~---~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|.++.|.|.+.|.|.|.++|+|||..+... ++.... .. ....|+|.++. .+|.|.|+|.|.|..|.+...+.|
T Consensus 23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 468999999999999999999999998642 332221 11 13579999997 599999999999999999999999
Q ss_pred EEeccc
Q psy12422 74 IVESEE 79 (356)
Q Consensus 74 ~v~~~~ 79 (356)
.|..+|
T Consensus 103 ~~~~~p 108 (109)
T cd05773 103 VSTSRP 108 (109)
T ss_pred EecCCC
Confidence 998654
No 108
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.63 E-value=2.8e-15 Score=98.02 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=60.9
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+.|.|.+.|.|.|.+.|+|+++.+.... ...........|.|.+++.+|.|.|+|.|.|..|.++..+.|.|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999999999999999999886432 2222223334799999999999999999999999999999998863
No 109
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.63 E-value=4.3e-15 Score=94.36 Aligned_cols=69 Identities=30% Similarity=0.648 Sum_probs=57.0
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+++.|.|.+.|.|.|.|+|+|+|..+....... .+...|.|.+++ |+|.|+|.|.|..|...+++.|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 6789999999999999999999998886544321 223479999874 79999999999999998888763
No 110
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.63 E-value=1.2e-14 Score=99.96 Aligned_cols=88 Identities=23% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCC--CceeEEEe----CCEEEEEEccCCCC-CCeEE
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS--NILDLKYK----NGVASLQIQEVFPE-DEGVY 260 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~v~~~-d~G~Y 260 (356)
||.+.. +....+.+|+.+.|.|.+.|.|.| .|.|++++..+... .++.+... ...++|.|.++..+ |.|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 455543 456778999999999999999999 59999999888654 34443332 22368999999995 59999
Q ss_pred EEEEEcCCCceEEEEEE
Q psy12422 261 VCTATNSLGTAETKCKL 277 (356)
Q Consensus 261 ~C~a~n~~g~~~~~~~l 277 (356)
+|.|.|..|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999999888776
No 111
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.63 E-value=8.1e-15 Score=101.82 Aligned_cols=89 Identities=33% Similarity=0.604 Sum_probs=66.3
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC----CceeEEE-eCCEEEEEEc--cCCCCCCeEEE
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS----NILDLKY-KNGVASLQIQ--EVFPEDEGVYV 261 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~----~~~~~~~-~~~~~~L~i~--~v~~~d~G~Y~ 261 (356)
||.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|+|..+... ....... .+....+.+. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 477777888899999999999999999999999999999988752 1111222 2222233332 34789999999
Q ss_pred EEEEcCCCc-eEEEEEE
Q psy12422 262 CTATNSLGT-AETKCKL 277 (356)
Q Consensus 262 C~a~n~~g~-~~~~~~l 277 (356)
|.|.|..|. ....+.|
T Consensus 81 C~a~N~~G~~~s~~~~l 97 (100)
T cd07693 81 CVAHNSLGEAVSRNASL 97 (100)
T ss_pred EEEEccccceecceEEE
Confidence 999999998 4455554
No 112
>KOG3515|consensus
Probab=99.63 E-value=2e-14 Score=127.90 Aligned_cols=334 Identities=18% Similarity=0.163 Sum_probs=189.0
Q ss_pred CceEEEEEe--ccCCCCeeEEeeCCEEcccCC---eeE--EecC----CeEEEEEeeCCCCCCeEEEEEEEeC---Ccee
Q psy12422 2 QNVIKVKVG--STKPPPTVKWYKGNRELSKRD---YSM--SYSD----GVVSMEIIDCKPEDSGEYKCVATNK---HGTD 67 (356)
Q Consensus 2 ~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~---~~~--~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~---~g~~ 67 (356)
..+.+.|.+ .+.|.+.++|+.++....... ... ...+ ....|++...+.+|.|.|+|.|.|. .+..
T Consensus 113 ~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~ 192 (741)
T KOG3515|consen 113 GVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF 192 (741)
T ss_pred CeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccc
Confidence 567889965 567888999999887653211 000 0111 1236788888899999999999883 4444
Q ss_pred EEEEEEEEeccccchhhhhh-cccccccCccceeeeccc---CCceeeecccccccCCccccCCCCceEEEEeecccccc
Q psy12422 68 ETNCVVIVESEEESKEQQEL-AHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYS 143 (356)
Q Consensus 68 ~~~~~l~v~~~~~~~~~~~~-~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (356)
.....+.|............ ....+.+|+.+.+.|... |.+.+.|+++......................
T Consensus 193 ~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~------ 266 (741)
T KOG3515|consen 193 AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSST------ 266 (741)
T ss_pred cceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCccccc------
Confidence 44555555544333222222 226788999999999655 88889999987766543111111100000000
Q ss_pred ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCe-ecccCCceeecCCCeEEEEEEE-cCCCCCeE
Q psy12422 144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ-FANKLTDKTIDDGQCLDLSAVV-KGDPEPRV 221 (356)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i 221 (356)
...............|.+. +. ........+ ..+|. ..+......+..|++..+.|.. .++|++.+
T Consensus 267 -~~~~~~r~~~~~~~kc~a~---n~--~~~~~~tav-------~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i 333 (741)
T KOG3515|consen 267 -LVLRVGRQDLQAQLKCKAS---NL--LAASQITAV-------QVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHI 333 (741)
T ss_pred -ccccccccchhhhhhcccc---Cc--cccceeeec-------ccccccccccCcccccccccccccceeccCCCCccce
Confidence 0000000000111111111 10 001111111 11121 1222333447889999999987 66888889
Q ss_pred EEEECCEEccCCCceeEEE--e--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe--cCCCCccc---------
Q psy12422 222 SWTKNGQPLNSSNILDLKY--K--NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--PLNSSNIL--------- 286 (356)
Q Consensus 222 ~W~~~g~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~--p~~~~~~~--------- 286 (356)
.|+++.............. . .....+........|.|.|+|.|.|.......+..+. +...+..+
T Consensus 334 ~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~ 413 (741)
T KOG3515|consen 334 AWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVA 413 (741)
T ss_pred eeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceee
Confidence 9999654443322111111 1 1123466677788899999999999885443333222 11111111
Q ss_pred -------------------eeEEe-----------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422 287 -------------------DLKYK-----------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330 (356)
Q Consensus 287 -------------------~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 330 (356)
.+.|. .......+.++...|.|.|.|.|.|+.|.+.....+.+.
T Consensus 414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~ 493 (741)
T KOG3515|consen 414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH 493 (741)
T ss_pred ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence 12221 123445577799999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcccCCCCceeEee
Q psy12422 331 STPAANLGKSPSKESDKAPRFFAIV 355 (356)
Q Consensus 331 ~~p~~~~~~~~~~~~~~~~~~~~~~ 355 (356)
..|.+.-..++..... +......|
T Consensus 494 ~sp~~~~~~~~~~~~~-~ns~~~~~ 517 (741)
T KOG3515|consen 494 TSPHNHHLQDQVEGAT-GNSVDGEC 517 (741)
T ss_pred cCCcccccccccccCC-CCccccee
Confidence 9999877777665544 33344433
No 113
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.62 E-value=2e-15 Score=102.04 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=59.3
Q ss_pred CCceEEEEEeccCCCCeeEEeeC----CEEcccCC---eeEEec-------CCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKG----NRELSKRD---YSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~----g~~l~~~~---~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
|+++.|.|.+.|.|.|.|+|+|+ |..+.... ...... +....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999994 45443221 111111 12357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12422 67 DETNCVVIV 75 (356)
Q Consensus 67 ~~~~~~l~v 75 (356)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999998887
No 114
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.62 E-value=4.4e-15 Score=100.87 Aligned_cols=68 Identities=32% Similarity=0.555 Sum_probs=55.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~ 70 (356)
|++++|.|.+.|.|.|.|+|+|||.++... .......++ .|.|.++. .+|+|.|+|.|.|..|...+.
T Consensus 19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 578999999999999999999999999643 223333444 68888874 699999999999999988543
No 115
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=2.2e-15 Score=95.56 Aligned_cols=67 Identities=30% Similarity=0.483 Sum_probs=55.8
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|+|.|.+.|+|||.++...... . . ...|.|.++..+|+|.|+|.|.|..|..+....+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 368999999999999999999999764322 1 1 24799999999999999999999999877766653
No 116
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.62 E-value=3.7e-15 Score=97.87 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=58.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.+. .+.|.|+|||.+|..... ....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~-~~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 9 GDLLQLRCRLRDD-VQSINWTKDGVQLGENNR-TRITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred CCCEEEEEEecCC-CceEEEeeCCcCCCCCce-EEEeCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 7899999999886 568999999999976432 222333 7999999999999999999999998877776654
No 117
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=1.3e-14 Score=98.10 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=61.0
Q ss_pred CeecccCCceeecC---CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422 190 PQFANKLTDKTIDD---GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT 265 (356)
Q Consensus 190 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 265 (356)
|.|...|.++.+.+ |..+.|.|.+.|+|.|.++|+|++..+...... ....++ .|.|.++. .+|+|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVGG--NLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEECC--EEEECcCCcCCCCEEEEEEEE
Confidence 45555555554544 347999999999999999999999888543221 223333 79999985 689999999999
Q ss_pred cCCCceEE
Q psy12422 266 NSLGTAET 273 (356)
Q Consensus 266 n~~g~~~~ 273 (356)
|..|....
T Consensus 79 N~~G~~~s 86 (93)
T cd05849 79 NIYGKVRS 86 (93)
T ss_pred eCcceEEE
Confidence 99998754
No 118
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.62 E-value=3.8e-15 Score=97.32 Aligned_cols=69 Identities=26% Similarity=0.492 Sum_probs=56.9
Q ss_pred eEEEEEecc-CCCCeeEEeeCCEEcccCCe----eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 4 VIKVKVGST-KPPPTVKWYKGNRELSKRDY----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
++|.|.+.| .|.|.+.|+|+|+++..... .+.......+|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 579999998 99999999999999875421 1233345568999999999999999999999999877654
No 119
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=1.3e-14 Score=96.41 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=61.7
Q ss_pred CeEEEEEEEcCCCCC--eEEEEECCEEccCCC---ce-eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 205 QCLDLSAVVKGDPEP--RVSWTKNGQPLNSSN---IL-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 205 ~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~---~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
++++|.|.+.|.|.| .+.|++||..+.... ++ ........++|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 589999999886432 22 112222346899999999999999999999999999999887
Q ss_pred cCCC
Q psy12422 279 PLNS 282 (356)
Q Consensus 279 p~~~ 282 (356)
+..+
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 5443
No 120
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.61 E-value=4.8e-15 Score=94.97 Aligned_cols=68 Identities=34% Similarity=0.499 Sum_probs=57.1
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|+|.|.+.|+|+|..+....+. .. ...+|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--~~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--KK--SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--Ec--CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 468999999999999999999998766432 22 235899999999999999999999999887776654
No 121
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.61 E-value=7.9e-15 Score=95.86 Aligned_cols=72 Identities=21% Similarity=0.476 Sum_probs=58.6
Q ss_pred ccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 194 NKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 194 ~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
..|.++.+.+|+.+.|.|.+.|+|.| .|.|++||.++.... ....+.|.|..+ .|+|.|.|.|.|..|...
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 34567889999999999999999999 799999999886411 112247899887 478999999999999765
Q ss_pred E
Q psy12422 273 T 273 (356)
Q Consensus 273 ~ 273 (356)
+
T Consensus 75 s 75 (81)
T cd05749 75 S 75 (81)
T ss_pred e
Confidence 4
No 122
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=5.4e-15 Score=98.15 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=57.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCE---Ec--ccCCee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNR---EL--SKRDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~---~l--~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|+++.|.|.+.|.|.|.++|||++. .+ ....+. ........+|.|.+++.+|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 8999999999999999999999742 11 111110 00111234899999999999999999999999998888876
Q ss_pred E
Q psy12422 75 V 75 (356)
Q Consensus 75 v 75 (356)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 123
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=4.7e-15 Score=95.19 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=57.2
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|+|.|.+.|++++..+.... .. ......+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TK--KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-ee--EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 4799999999999999999988775432 22 222345899999999999999999999999999888775
No 124
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.61 E-value=3.4e-15 Score=100.94 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=59.3
Q ss_pred CCceEEEEEecc-----CCCCeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 1 MQNVIKVKVGST-----KPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 1 g~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
|+++.|.|.+.| .|.|.|+|||+|.++.. ....+...++ .|.|.+++.+|+|.|+|.++|..|..+..+.
T Consensus 14 G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~ 91 (94)
T cd05756 14 GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYCMKVSIS 91 (94)
T ss_pred CCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCccEEEEEE
Confidence 789999999988 68999999999976542 1122222333 7999999999999999999999999998888
Q ss_pred EEE
Q psy12422 73 VIV 75 (356)
Q Consensus 73 l~v 75 (356)
|.|
T Consensus 92 L~v 94 (94)
T cd05756 92 LTV 94 (94)
T ss_pred EEC
Confidence 765
No 125
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.60 E-value=1.2e-14 Score=95.40 Aligned_cols=77 Identities=25% Similarity=0.531 Sum_probs=64.4
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
....+.+|+.+.|.|.+.+. .+.+.|+|||.++....++.+ .+. .|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~--~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI--TGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE--eCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 45678899999999999986 568999999999876655433 233 7999999999999999999999999887776
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
+.
T Consensus 77 v~ 78 (79)
T cd04973 77 VN 78 (79)
T ss_pred Ee
Confidence 64
No 126
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.60 E-value=7e-15 Score=95.99 Aligned_cols=67 Identities=25% Similarity=0.586 Sum_probs=54.2
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 274 (356)
++|.|.+.|.|.|.++|+|+|..+...... .........|.|.+++.+|+|.|.|.|.|..|....+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 67 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence 479999999999999999999988655422 1222333489999999999999999999999987543
No 127
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=8.6e-15 Score=98.94 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=53.5
Q ss_pred CceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~ 69 (356)
..+.|.|.+.|.|.|.|+|+|++.++..........++ .|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGG--NLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECC--EEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 47999999999999999999999988633222233344 78998885 69999999999999998755
No 128
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.59 E-value=1.5e-14 Score=97.28 Aligned_cols=72 Identities=29% Similarity=0.453 Sum_probs=57.8
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEE
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~ 74 (356)
|+++.|.|.+ .|.|.|.+.|+|+|..+.... ......++ .|.|.+++.+|+|.|+|.|.|..|...+ .+.|.
T Consensus 11 G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 11 GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC--EEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 7899999998 799999999999999987532 22222333 7999999999999999999999998754 44443
No 129
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.59 E-value=1.8e-14 Score=97.92 Aligned_cols=67 Identities=24% Similarity=0.434 Sum_probs=54.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~ 69 (356)
|++++|.|.+.|+|.|.|+|+|||..+... .......++ .|.|.++. .+|+|.|+|.|+|..|...+
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 568999999999999999999999998632 222233344 68888765 69999999999999998865
No 130
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.59 E-value=1e-14 Score=97.14 Aligned_cols=77 Identities=27% Similarity=0.597 Sum_probs=64.3
Q ss_pred eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
....|+++.|.|.+.|.|.|.+.|+++|..+....... .......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45679999999999999999999999998876543322 223346899999999999999999999999998888774
No 131
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.2e-14 Score=94.71 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=55.3
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEc-cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|.|.++|+|+|... .......+........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 368999999999999999988643 222111122222234899999999999999999999999988888775
No 132
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.58 E-value=1.5e-14 Score=94.39 Aligned_cols=70 Identities=30% Similarity=0.477 Sum_probs=58.2
Q ss_pred EEEEEEEcC-CCCCeEEEEECCEEccCCCcee---EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILD---LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
+.|.|.+.| .|.|.+.|+|+|..+....... +........|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999887654322 333344578999999999999999999999999887764
No 133
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.58 E-value=8.8e-15 Score=95.52 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=50.3
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCC----CCCeEEEEEEEeCCceeEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~g~~~~ 69 (356)
|+|.|.+.|.|.|.|+|+|||.++... ...+........|.|.++.. +|+|.|+|.|.|..|.+.+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 589999999999999999999998532 21222222223778877753 7899999999999998754
No 134
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.58 E-value=3.3e-14 Score=95.55 Aligned_cols=76 Identities=39% Similarity=0.588 Sum_probs=62.0
Q ss_pred CCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 196 LTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
|.+..+.+|+++.|.|.+ .|.|.|.+.|+++|..+........... ...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 456788999999999998 7999999999999998876432211222 238999999999999999999999998654
No 135
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.58 E-value=1.1e-14 Score=97.06 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCceEEEEEeccC--CCCeeEEeeCCEEcccCC----eeE--EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 1 MQNVIKVKVGSTK--PPPTVKWYKGNRELSKRD----YSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 1 g~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~----~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
|+++.|.|.+.|. |.|.++|+++++.+.... +.. ........|+|.+++.+|+|.|+|.|.|..|..++++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 8999999999998 889999999887653221 111 11123458999999999999999999999999998888
Q ss_pred EEE
Q psy12422 73 VIV 75 (356)
Q Consensus 73 l~v 75 (356)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 136
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=2.4e-14 Score=91.58 Aligned_cols=68 Identities=35% Similarity=0.625 Sum_probs=56.3
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|.|+|.+.|+|++..+... +.... .. ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-DD--KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-eC--CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 479999999999999999998776543 22222 22 3799999999999999999999999998888774
No 137
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.57 E-value=3.8e-14 Score=92.26 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=49.8
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEccc--C-CeeEEecCCeEEEEEeeCC----CCCCeEEEEEEEeCCceeEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSK--R-DYSMSYSDGVVSMEIIDCK----PEDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~-~~~~~~~~~~~~L~i~~~~----~~D~G~Y~C~a~n~~g~~~~~ 70 (356)
+.|.|.+.|+|.|.|+|+|||.++.. + ++.+...++ +|.|..+. .+|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 57999999999999999999998742 2 333323344 78887764 246999999999999987654
No 138
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.57 E-value=2.3e-14 Score=93.55 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=54.7
Q ss_pred eEEEEEec-cCCCCeeEEeeCCEEcccC-----CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 4 VIKVKVGS-TKPPPTVKWYKGNRELSKR-----DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 4 v~l~C~~~-g~p~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
+.|+|.+. +.|.+.++|||+|+++... ++..........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 57999985 4788999999999998532 122233344568999999999999999999999998877654
No 139
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.57 E-value=5.5e-14 Score=95.10 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=64.2
Q ss_pred ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCC-c
Q psy12422 194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLG-T 270 (356)
Q Consensus 194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~ 270 (356)
+.|....+..|+++.|.|.+.|.|+ .+.|++ ++..+.......... ....++|+|.+++.+|+|.|+|.|.|..| .
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 3455678999999999999999974 999998 676665534433322 23457899999999999999999999965 4
Q ss_pred eEEEEEEe
Q psy12422 271 AETKCKLT 278 (356)
Q Consensus 271 ~~~~~~l~ 278 (356)
..+++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 56666653
No 140
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=3e-14 Score=92.70 Aligned_cols=65 Identities=23% Similarity=0.463 Sum_probs=49.6
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCC----CCCeEEEEEEEeCCceeEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~g~~~~~ 70 (356)
|.|.|.+.|.|.|+|+|+|||.++... .+.....++ +|.|..+.. .|.|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 689999999999999999999988432 222223345 566766653 47899999999999987654
No 141
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.57 E-value=2.7e-14 Score=97.68 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=56.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeC-----CCCCCeEEEEEEEeC-CceeE-EEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDC-----KPEDSGEYKCVATNK-HGTDE-TNC 71 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~a~n~-~g~~~-~~~ 71 (356)
|+++.|.|.+.|.|.|.|+|+|||..+.... +.....++ .|.|.++ +..|+|.|+|.|.|. .|... ..+
T Consensus 14 g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~ 91 (95)
T cd05722 14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTA 91 (95)
T ss_pred CCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeee
Confidence 7899999999999999999999999987432 12333444 4556655 589999999999999 99874 455
Q ss_pred EEEE
Q psy12422 72 VVIV 75 (356)
Q Consensus 72 ~l~v 75 (356)
.|.|
T Consensus 92 ~l~v 95 (95)
T cd05722 92 RLTV 95 (95)
T ss_pred EEeC
Confidence 5543
No 142
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.57 E-value=2.8e-14 Score=96.41 Aligned_cols=76 Identities=26% Similarity=0.480 Sum_probs=58.3
Q ss_pred CCeEEEEEEEcCCCCCeEEEEEC----CEEccCCCceeEE--E-------eCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKN----GQPLNSSNILDLK--Y-------KNGVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~----g~~~~~~~~~~~~--~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
|+++.|.|.+.|.|.|.|.|+++ |..+......... . ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999983 4444322211111 1 112358999999999999999999999999
Q ss_pred eEEEEEEec
Q psy12422 271 AETKCKLTP 279 (356)
Q Consensus 271 ~~~~~~l~p 279 (356)
...++.|.+
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988887753
No 143
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.57 E-value=2.7e-14 Score=94.71 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=57.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCC---eeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeCCc--eeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNKHG--TDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~---~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g--~~~~~~~l 73 (356)
||+++|+|.+.|.|.+.+.|+++++...... .... .....+.|+|.+++.+|+|.|+|.|.|..+ ...+++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8999999999999999999999876432211 0111 122256899999999999999999999866 56677777
Q ss_pred EEe
Q psy12422 74 IVE 76 (356)
Q Consensus 74 ~v~ 76 (356)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 144
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.57 E-value=3.1e-14 Score=93.00 Aligned_cols=73 Identities=32% Similarity=0.472 Sum_probs=60.8
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p 279 (356)
+.|.|.+.|.|+|.+.|+|++..+.......+........|.|.+++.+|.|.|+|.|.|..|..+..+.|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 3689999999999999999999887654433444444458999999999999999999999999998888753
No 145
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.56 E-value=1.9e-14 Score=93.95 Aligned_cols=67 Identities=33% Similarity=0.572 Sum_probs=52.6
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCCceEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 273 (356)
+.|.|.+.|+|.|.++|+|+|..+.......+......+.|.|.+++. +|+|.|.|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 478999999999999999999988654332333333345888988854 7899999999999997654
No 146
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.56 E-value=3.9e-14 Score=98.39 Aligned_cols=75 Identities=23% Similarity=0.401 Sum_probs=56.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-----CeeEEecCC-eEEEEEe--eCCCCCCeEEEEEEEeCCce-eEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-----DYSMSYSDG-VVSMEII--DCKPEDSGEYKCVATNKHGT-DETNC 71 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~~-~~~L~i~--~~~~~D~G~Y~C~a~n~~g~-~~~~~ 71 (356)
|+++.|.|.+.|.|.|.|+|||+|..+... .......++ ...+.|. .++.+|+|.|+|.|.|..|. .+..+
T Consensus 16 G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 95 (100)
T cd07693 16 GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNA 95 (100)
T ss_pred CCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceE
Confidence 789999999999999999999999998651 122223333 2333443 34689999999999999999 55667
Q ss_pred EEEE
Q psy12422 72 VVIV 75 (356)
Q Consensus 72 ~l~v 75 (356)
.|.|
T Consensus 96 ~l~v 99 (100)
T cd07693 96 SLEV 99 (100)
T ss_pred EEEe
Confidence 7665
No 147
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=5e-14 Score=94.15 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=60.8
Q ss_pred CeEEEEEEEcCCCCC--eEEEEECCEEccCCC---ceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 205 QCLDLSAVVKGDPEP--RVSWTKNGQPLNSSN---ILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 205 ~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~---~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+++.|.|.+.|.|.| .+.|+++|..+.... .+.. ......+.|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999987 579999999886432 1111 1122345899999999999999999999999999988887
Q ss_pred cCCC
Q psy12422 279 PLNS 282 (356)
Q Consensus 279 p~~~ 282 (356)
+..+
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 5543
No 148
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=3.4e-14 Score=90.19 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=54.7
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
+.|.|.+.|+|+|.+.|+|+|.++..... .+...+ .+|.|.+++.+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46899999999999999999999876432 222333 379999999999999999999997776665544
No 149
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=6.7e-14 Score=90.94 Aligned_cols=72 Identities=32% Similarity=0.608 Sum_probs=59.3
Q ss_pred CCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+... ... .+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-YDN--GTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-ecC--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 7889999999999999999997 6776655443322 222 3799999999999999999999999998887764
No 150
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.55 E-value=4.7e-14 Score=92.54 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=60.4
Q ss_pred CeEEEEEEEcC--CCCCeEEEEECCEEccCC-CceeEEEe---CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 205 QCLDLSAVVKG--DPEPRVSWTKNGQPLNSS-NILDLKYK---NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 205 ~~~~l~C~~~g--~p~p~i~W~~~g~~~~~~-~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+++.|.|.+.+ .+++.|.|++||..+... ....+... ...+.|.|.+++.+|+|.|+|.|.|.++...+++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46899999966 557889999999999632 11122221 1234899999999999999999999999999999987
Q ss_pred cCCC
Q psy12422 279 PLNS 282 (356)
Q Consensus 279 p~~~ 282 (356)
+..+
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 5544
No 151
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.55 E-value=4.5e-14 Score=95.23 Aligned_cols=75 Identities=27% Similarity=0.488 Sum_probs=56.9
Q ss_pred CCeEEEEEEEcCCCCCeEEEEEC----CEEccCCCce--eEE-------EeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKN----GQPLNSSNIL--DLK-------YKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~----g~~~~~~~~~--~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
|+.+.|.|.+.|.|.|.|+|+|+ |..+...... ... ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 67899999999999999999995 3333211111 111 1122358999999999999999999999999
Q ss_pred eEEEEEEe
Q psy12422 271 AETKCKLT 278 (356)
Q Consensus 271 ~~~~~~l~ 278 (356)
..+++.|.
T Consensus 81 ~~~sa~L~ 88 (90)
T cd04974 81 SHHSAWLT 88 (90)
T ss_pred ccCCEEEE
Confidence 98888775
No 152
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.55 E-value=9.6e-14 Score=94.04 Aligned_cols=82 Identities=26% Similarity=0.472 Sum_probs=61.1
Q ss_pred CeecccCCceeecC---CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC-CCCeEEEEEEE
Q psy12422 190 PQFANKLTDKTIDD---GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-EDEGVYVCTAT 265 (356)
Q Consensus 190 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~ 265 (356)
|.|...+.++.+.+ |..+.|.|.+.|+|.|.++|++++..+............+ .|.|.++.. +|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 44555555554443 4679999999999999999999999885433233333333 788988874 89999999999
Q ss_pred cCCCceEE
Q psy12422 266 NSLGTAET 273 (356)
Q Consensus 266 n~~g~~~~ 273 (356)
|..|....
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997654
No 153
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.55 E-value=4.5e-14 Score=95.52 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=56.9
Q ss_pred CCceEEEEEeccCCCCeeEEee-CCEEccc-CCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSK-RDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~-~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v 75 (356)
|+++.|.|.+.|.|+ .++|++ +|..+.. .++... ......+|+|.+++.+|+|.|+|.|.|..| ..++++.|.|
T Consensus 15 G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 15 GESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred CCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 789999999999975 999998 6776654 333332 233456899999999999999999999864 4566666643
No 154
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.55 E-value=1.9e-13 Score=92.15 Aligned_cols=88 Identities=22% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCC--CceeEEEe----CCEEEEEEccCCCCC-CeEE
Q psy12422 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSS--NILDLKYK----NGVASLQIQEVFPED-EGVY 260 (356)
Q Consensus 189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y 260 (356)
||.+ .....+.+.+|+.+.|.|.+.+.|+|. |.|..++..+... .++.+... +..+.|+|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5666 455677899999999999999899875 8999988776543 45555443 356899999998877 7999
Q ss_pred EEEEEcCCCceEEEEEE
Q psy12422 261 VCTATNSLGTAETKCKL 277 (356)
Q Consensus 261 ~C~a~n~~g~~~~~~~l 277 (356)
.|.|.|..|.+...+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999988876
No 155
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=3.3e-14 Score=91.72 Aligned_cols=69 Identities=41% Similarity=0.663 Sum_probs=56.7
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
+.|.|.+.|+|.|.+.|++++..+.... . ........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence 4799999999999999999988775432 2 1222335899999999999999999999999988888774
No 156
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.54 E-value=4.9e-14 Score=91.73 Aligned_cols=67 Identities=34% Similarity=0.554 Sum_probs=51.4
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCC----CCeEEEEEEEcCCCceEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE----DEGVYVCTATNSLGTAET 273 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~Y~C~a~n~~g~~~~ 273 (356)
+.|.|.+.|+|.|.|+|+|+|..+..............++|.|..+..+ |.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4799999999999999999999875433322333333347888877653 789999999999998765
No 157
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.54 E-value=6.3e-14 Score=91.19 Aligned_cols=68 Identities=31% Similarity=0.491 Sum_probs=50.5
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCCceEEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAETK 274 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~~ 274 (356)
+.|.|.+.|+|.|.++|+|+|..+.......+.......+|.|..++. +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 468999999999999999999876432222222222335899987642 46999999999999976654
No 158
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=3.8e-14 Score=95.82 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=62.8
Q ss_pred ceeecCCCeEEEEEEEcC-----CCCCeEEEEECCEEccCC--CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 198 DKTIDDGQCLDLSAVVKG-----DPEPRVSWTKNGQPLNSS--NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g-----~p~p~i~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
...+.+|+.+.|.|.+.+ .|.|.|.|+|+|..+... ....+...+ ..|.|.++..+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCcc
Confidence 456778999999999998 688999999998664422 112222222 48999999999999999999999999
Q ss_pred eEEEEEEe
Q psy12422 271 AETKCKLT 278 (356)
Q Consensus 271 ~~~~~~l~ 278 (356)
.+..+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 99888774
No 159
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.54 E-value=4.4e-14 Score=92.35 Aligned_cols=62 Identities=16% Similarity=0.346 Sum_probs=50.4
Q ss_pred CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422 1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 69 (356)
|+++.|.|.+.|.|.| +|+|+|||.++... . .... ..|.|..+ .|+|.|.|.|+|..|...+
T Consensus 13 G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~--~~~~--s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 13 NTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-P--APSP--SVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCEEEEEEeeeecCCeEEEEEECCEECCCC-C--CCCC--CEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 7899999999999999 79999999998641 1 1122 37888875 5899999999999997754
No 160
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.54 E-value=1.4e-13 Score=94.12 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=62.3
Q ss_pred cccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE-EeCCEEEEEEccC-----CCCCCeEEEEEEEc
Q psy12422 193 ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVASLQIQEV-----FPEDEGVYVCTATN 266 (356)
Q Consensus 193 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~v-----~~~d~G~Y~C~a~n 266 (356)
...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+......... ..++ .|.|.++ +.+|.|.|.|.|.|
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 34456677889999999999999999999999999988754432111 2222 4666665 68899999999999
Q ss_pred C-CCceE-EEEEE
Q psy12422 267 S-LGTAE-TKCKL 277 (356)
Q Consensus 267 ~-~g~~~-~~~~l 277 (356)
. .|... ..+.|
T Consensus 81 ~~~G~~~s~~~~l 93 (95)
T cd05722 81 DSLGSIVSRTARL 93 (95)
T ss_pred CccCcEEEeeeEE
Confidence 9 99763 34444
No 161
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.53 E-value=9.7e-14 Score=95.38 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCceEEEEEeccCCCC-eeEEeeCCEEcccC---CeeEEec----CCeEEEEEeeCCCCC-CeEEEEEEEeCCceeEEEE
Q psy12422 1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKR---DYSMSYS----DGVVSMEIIDCKPED-SGEYKCVATNKHGTDETNC 71 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~---~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~~~ 71 (356)
|+++.|.|.+.|.|.| .|.|++++..+... ++.+... .....|+|.+++.+| .|.|+|.|.|..|.+...+
T Consensus 16 G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~ 95 (98)
T cd05758 16 GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAII 95 (98)
T ss_pred CCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEE
Confidence 7899999999999999 59999999988642 3433322 223589999999855 8999999999999988877
Q ss_pred EE
Q psy12422 72 VV 73 (356)
Q Consensus 72 ~l 73 (356)
.|
T Consensus 96 ~L 97 (98)
T cd05758 96 SL 97 (98)
T ss_pred Ee
Confidence 65
No 162
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.53 E-value=4.6e-14 Score=92.86 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=50.9
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEc-c-------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNREL-S-------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVI 74 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l-~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~ 74 (356)
|+|.|.+.|.|.|.|+|+|++... . ...+.....++ +|.|.+++.+|+|.|.|.|.|..|.+ +..+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC--eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 689999999999999999964321 1 11111122333 79999999999999999999999987 4445544
No 163
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.53 E-value=3.6e-13 Score=99.04 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+|+|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~ 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence 699999999999999999999888888888888753
No 164
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=8.2e-14 Score=94.16 Aligned_cols=74 Identities=28% Similarity=0.505 Sum_probs=59.1
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEcc--------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLN--------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 275 (356)
|+.+.|.|.+.|+|.|.+.|+++|..+. ...++.. . ....|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--S-QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--C-CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 7889999999999999999999876431 1222222 1 123799999999999999999999999998888
Q ss_pred EEecC
Q psy12422 276 KLTPL 280 (356)
Q Consensus 276 ~l~p~ 280 (356)
.|.+.
T Consensus 78 ~l~V~ 82 (90)
T cd05726 78 YLEVT 82 (90)
T ss_pred EEEEe
Confidence 88744
No 165
>KOG3515|consensus
Probab=99.53 E-value=1.3e-13 Score=122.86 Aligned_cols=319 Identities=18% Similarity=0.228 Sum_probs=177.3
Q ss_pred CCceEEEEEeccCCC-CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEEecc
Q psy12422 1 MQNVIKVKVGSTKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESE 78 (356)
Q Consensus 1 g~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~ 78 (356)
||.|.|.|.+.++|+ +.+.||+.++.+. .++.. ..+. .|......++..+.|.|++.|..+.-.. ...+.+.++
T Consensus 22 g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~-~~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~ 97 (741)
T KOG3515|consen 22 GEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT-IADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYP 97 (741)
T ss_pred CCcceeeeecCCCCCCcceEEEecCcccc-ccccc-ccCC--ceeeecchhhhhhhhhhhhcccccCceecceeeccccC
Confidence 799999999976654 5899999988776 32222 2222 5666666677789999999998555432 244444443
Q ss_pred ccchhhhhhcccccccCccceeeeccc----CCceeeecccccccCCcccc-------CCC--------CceEEEEeecc
Q psy12422 79 EESKEQQELAHNFLYSGDRKYIEKHIR----PAPAIITTRQEIKSSYSSHT-------DDT--------GRTTTQMSTLS 139 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~----p~p~i~w~~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~ 139 (356)
+ ............++..+.+.|... |.+.+.|..+.......... ... ...........
T Consensus 98 p--a~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~ 175 (741)
T KOG3515|consen 98 P--ACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADN 175 (741)
T ss_pred c--cccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCC
Confidence 2 223334455567788899999654 77779998876544322210 000 01111233344
Q ss_pred ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCC
Q psy12422 140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPE 218 (356)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~ 218 (356)
++|.|.+.+...... .......+.+.. ......+......+.+.+|+.+.|.|.+ .|+|.
T Consensus 176 g~~tC~A~nr~s~~l-----------------~~~~~~~i~v~~--~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~ 236 (741)
T KOG3515|consen 176 GNYTCPANNRNSPGL-----------------SFAKQLTIIVEA--PCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPS 236 (741)
T ss_pred ceeEcccccccCccc-----------------cccceeEeeccc--ccccceecchhhcCcccccceEEEEehhhcCCcc
Confidence 556666544322221 112222222211 1122222222233678899999999987 67899
Q ss_pred CeEEEEECCEEccCCCceeEEEeCC--EEEEEEccCCCCCCeEEEEEEEcCCCc-eEEEEEEecCCCC------------
Q psy12422 219 PRVSWTKNGQPLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLTPLNSS------------ 283 (356)
Q Consensus 219 p~i~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~p~~~~------------ 283 (356)
+.+.|+++...+...+.......+. .+++.+..-+.++.-...|.+.|.... ....+...|...+
T Consensus 237 ~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 237 QQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGR 316 (741)
T ss_pred hhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCccccccccc
Confidence 9999999877665431111111111 134555555555566778999991111 1111111111000
Q ss_pred --ccc----------eeEEeC---------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEE
Q psy12422 284 --NIL----------DLKYKN---------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLT 328 (356)
Q Consensus 284 --~~~----------~~~~~~---------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~ 328 (356)
++. .+.|.+ ....+........|.|.|.|.|.|...... ..+.|.
T Consensus 317 s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~ 396 (741)
T KOG3515|consen 317 SARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP 396 (741)
T ss_pred ccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence 000 122221 123466667778899999999999776543 366777
Q ss_pred EEecCCCCCCCCCCcc
Q psy12422 329 VRSTPAANLGKSPSKE 344 (356)
Q Consensus 329 V~~~p~~~~~~~~~~~ 344 (356)
+..+|+-.....+.+.
T Consensus 397 ~l~~p~~L~~~~~~v~ 412 (741)
T KOG3515|consen 397 VLPSPAFLVRHKTAVV 412 (741)
T ss_pred ccCCchhhhhccccee
Confidence 7777765444444433
No 166
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.52 E-value=8e-14 Score=90.56 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=58.0
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|||..+.. ....|.|.++ .+|+|.|+|+|.|..
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~~ 69 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGSS 69 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCCc
Confidence 345556677789999999999999998864 6999999988732 1237999999 999999999999874
Q ss_pred CceEE
Q psy12422 269 GTAET 273 (356)
Q Consensus 269 g~~~~ 273 (356)
-+...
T Consensus 70 ~S~~v 74 (78)
T cd05752 70 LSDPV 74 (78)
T ss_pred CCCCE
Confidence 44433
No 167
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=1.1e-13 Score=91.89 Aligned_cols=75 Identities=27% Similarity=0.516 Sum_probs=56.4
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCE---E--ccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQ---P--LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~---~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
|+.+.|.|.+.|.|.|.+.|+|++. . +................|.|.+++.+|+|.|.|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7889999999999999999999632 1 1111100001112235899999999999999999999999999888874
No 168
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.52 E-value=1.1e-13 Score=93.73 Aligned_cols=67 Identities=28% Similarity=0.481 Sum_probs=53.1
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~ 69 (356)
|+++.|.|.+.|+|.|.|+|+|+|..+... .......++ .|.|.++. .+|+|.|+|.|.|..|.+.+
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 357999999999999999999999998432 222333344 68898876 49999999999999998755
No 169
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.51 E-value=1.5e-13 Score=89.04 Aligned_cols=70 Identities=30% Similarity=0.538 Sum_probs=53.3
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKL 277 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l 277 (356)
++|.|.+.|+|.|.|.|+|++..+.......+... ....|.|.+++.+|+|.|.|.|.|..|.. ...+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence 37999999999999999999998863222122222 22379999999999999999999999974 333433
No 170
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.50 E-value=3.9e-13 Score=90.17 Aligned_cols=75 Identities=25% Similarity=0.394 Sum_probs=61.5
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCC-ee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.+.|.+.+.|+|++..+.... .. .........|.|.++..+|+|.|.|.+.|..|....++.|.|
T Consensus 9 G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred CCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 7899999999999999999999999886432 11 122334458999999999999999999999999888877764
No 171
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.50 E-value=3e-13 Score=88.30 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=55.6
Q ss_pred EEEEEEEc-CCCCCeEEEEECCEEccCCC----ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 207 LDLSAVVK-GDPEPRVSWTKNGQPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 207 ~~l~C~~~-g~p~p~i~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
+.|.|.+. +.|.+.+.|+++|..+.... ++..........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 47999986 47888999999999886432 223333344578999999999999999999999999887765
No 172
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.48 E-value=4.3e-13 Score=88.34 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+++.|.|.+.+ |.+.|+|+|||.++..+.......++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 11 G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 11 GNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 789999999854 67899999999999765222334444 69999999999999999998863
No 173
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.47 E-value=4.2e-13 Score=90.69 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEc---------ccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNREL---------SKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l---------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~ 70 (356)
|+++.|.|.+.|.|.|.|.|+|+++.+ ...++.... .....+|.|.+++.+|+|.|+|.+... -..++.
T Consensus 12 G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~~~~ 90 (95)
T cd05882 12 GGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVRTAK 90 (95)
T ss_pred CCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccccEE
Confidence 899999999999999999999977543 112332222 223569999999999999999999773 233444
Q ss_pred EEEE
Q psy12422 71 CVVI 74 (356)
Q Consensus 71 ~~l~ 74 (356)
+.|+
T Consensus 91 ~~~~ 94 (95)
T cd05882 91 ATVT 94 (95)
T ss_pred EEEE
Confidence 4443
No 174
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=3.8e-13 Score=89.64 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=58.1
Q ss_pred CCeEEEEEEEcCC--CCCeEEEEECCEEccCCCcee-----EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 204 GQCLDLSAVVKGD--PEPRVSWTKNGQPLNSSNILD-----LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 204 g~~~~l~C~~~g~--p~p~i~W~~~g~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
|+.+.|.|.+.|. |.|.|.|++++..+....... .......+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 888999998776554321110 011123468999999999999999999999999888877
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
+.
T Consensus 81 v~ 82 (84)
T cd05742 81 VN 82 (84)
T ss_pred EE
Confidence 64
No 175
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.46 E-value=4.8e-13 Score=89.81 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=56.6
Q ss_pred CCceEEEEEecc-----CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|...+ +|.|.+.|||||+++...++... .++ .|.|.++..+|+|.|+|.|.|..+.....+...+
T Consensus 10 g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 10 TKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred ccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 678999998732 36789999999999986654433 333 8999999999999999999998777665544444
No 176
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.44 E-value=3.3e-12 Score=85.61 Aligned_cols=80 Identities=25% Similarity=0.588 Sum_probs=65.1
Q ss_pred eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
+.+.+|+.+.|.|.+.++|.+.+.|++++..+........ ........|.|.+++.+|+|.|.|.|.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 3567899999999999999999999999988765443322 222334689999999999999999999999998888776
Q ss_pred e
Q psy12422 278 T 278 (356)
Q Consensus 278 ~ 278 (356)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 177
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.44 E-value=2.9e-13 Score=87.92 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=44.8
Q ss_pred CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|+|.+.+.|.+ .+.|||||..+.. .+ ..|+|.++ .+|+|.|+|.|.|.
T Consensus 15 G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~--~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 15 GEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TT--NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCEEEEEeCCCCCCCccEEEEECCEEeec-------cC--CeEEEeec-ccCCEEeEEECCCC
Confidence 8999999999988864 6999999998732 11 27899999 99999999999875
No 178
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.44 E-value=1.1e-12 Score=87.74 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=62.4
Q ss_pred cCCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 195 KLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 195 ~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
.+....+.+|++++|.|.+.+ .|.+.+.|++++..+.... .. ....|.|.+++.+|+|.|.|.|.|..|...+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~--~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MD--FNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cc--cCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 345667899999999999964 7888999999886654321 11 1248999999999999999999999999988
Q ss_pred EEEE
Q psy12422 274 KCKL 277 (356)
Q Consensus 274 ~~~l 277 (356)
.+.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 8765
No 179
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.43 E-value=2.5e-12 Score=86.91 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=54.6
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc-c-------CCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-N-------SSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATN 266 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~-~-------~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n 266 (356)
.++++.+|+++.|.|.+.+.|.|.|.|++++..+ . ...++... .......|.|.+++.+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4678999999999999999999999999876532 1 12233222 122357999999999999999999988
No 180
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.42 E-value=1.3e-12 Score=88.16 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=56.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCC---eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC-CceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK-HGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~v~ 76 (356)
|+++.|.|.+.+ |.+.+.|||++..+.... .......+ .|.|.+++.+|+|.|.|.|.+. .+....++.|.|.
T Consensus 11 g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 11 GNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 789999999977 888999999998776431 12222222 5899999999999999999875 4555666777775
No 181
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.42 E-value=2.1e-12 Score=85.64 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=55.3
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCC----ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC--ceEEEEEE
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG--TAETKCKL 277 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l 277 (356)
|+++.|.|.+.+.|.+.+.|++.+....... ..........++|.|.+++.+|+|.|.|.|.|..+ ....++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998775432211 11111112246899999999999999999999876 55666655
Q ss_pred e
Q psy12422 278 T 278 (356)
Q Consensus 278 ~ 278 (356)
.
T Consensus 81 ~ 81 (84)
T cd05861 81 T 81 (84)
T ss_pred E
Confidence 4
No 182
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.42 E-value=1e-12 Score=87.85 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=56.0
Q ss_pred CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
|++++|.|.+.+ .|.+.+.|+|++..+.... ...+ ..|.|.+++.+|+|.|.|.|.|..|...+++.|
T Consensus 16 G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 16 GADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---cccC--CEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 789999999964 7889999999987765321 1222 379999999999999999999999998887765
No 183
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.42 E-value=1.8e-12 Score=87.95 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=53.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCE---------EcccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNR---------ELSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~---------~l~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~ 70 (356)
|+++.|.|.+.+.|.+.+.||+.++ .+...++.... ..+..+|+|.+++.+|+|.|+|.+.+..+. ...
T Consensus 12 G~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~ 90 (95)
T cd07701 12 GGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK-TSK 90 (95)
T ss_pred CCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc-cEE
Confidence 7999999999999999999987322 12223443322 235579999999999999999999875333 555
Q ss_pred EEEEE
Q psy12422 71 CVVIV 75 (356)
Q Consensus 71 ~~l~v 75 (356)
..|.|
T Consensus 91 ~~l~v 95 (95)
T cd07701 91 AYLTV 95 (95)
T ss_pred EEEEC
Confidence 55543
No 184
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.41 E-value=3.9e-12 Score=83.81 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
|.+..+..|+++.|.|.+.+ |.+.+.|++||.++...... +....+ .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r-~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAK-YLLYRD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCce-EEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 45678999999999999864 67899999999999765322 223333 69999999999999999998875
No 185
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.40 E-value=2.3e-12 Score=84.74 Aligned_cols=68 Identities=26% Similarity=0.528 Sum_probs=50.0
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEcc--------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLN--------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKL 277 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l 277 (356)
++|.|.+.|+|.|.+.|++++.... ...++.. .. ..+|.|.++..+|+|.|.|.|.|..|.+ ...+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-LS--NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-ec--CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4799999999999999999643211 1122222 12 2489999999999999999999999976 444443
No 186
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.38 E-value=3.5e-12 Score=85.63 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=60.4
Q ss_pred ceeecCCCeEEEEEEEcC-----CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 198 DKTIDDGQCLDLSAVVKG-----DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g-----~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
.+.+.+|+...|.|...+ +|.|.+.|+||+.++........ ....|.|.+++.+|+|.|+|.|.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 356788999999998743 36789999999999876543322 234899999999999999999999998876
Q ss_pred EEEEE
Q psy12422 273 TKCKL 277 (356)
Q Consensus 273 ~~~~l 277 (356)
..+..
T Consensus 80 ~~~t~ 84 (92)
T cd05757 80 YNVTR 84 (92)
T ss_pred EEEEE
Confidence 65544
No 187
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.38 E-value=1.9e-12 Score=86.49 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=57.5
Q ss_pred CceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEc--cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
....+.+|+.+.|.|.. .|+|.|.+.|++++..+ ..+.+..+.. ..+.|.|.+++++|+|.|+|.|.|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 34578899999999987 89999999999998754 2223332222 23489999999999999999999988654
No 188
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.37 E-value=1.8e-12 Score=86.60 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCCEEc--ccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGNREL--SKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l--~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
|+.+.|.|.. .|.|.+.|.|+|++.++ ..+ +..+...+| .|.|.+|+.+|+|.|+|.|+|.....
T Consensus 18 G~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 18 GWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 7899999987 89999999999998765 222 333333455 89999999999999999999976543
No 189
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.37 E-value=5.2e-12 Score=79.26 Aligned_cols=62 Identities=32% Similarity=0.516 Sum_probs=50.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g 65 (356)
|+++.|.|.+.+.|.+.+.|++++..+.. .. ........|.|.+++.+|+|.|+|.+.|..|
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLKDGKPLPE-SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEECCEECCC-CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 78999999998899999999999998872 21 1222334899999999999999999998754
No 190
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.36 E-value=1.2e-11 Score=83.94 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=58.4
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEEC--------CEEccCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--------GQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNS 267 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--------g~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 267 (356)
.++.+.+|+++.|.|.+.+.|.+.+.|++. +.......++.... .....+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 567899999999999999999999999862 22222233443322 234578999999999999999999985
Q ss_pred CCceEEEEEE
Q psy12422 268 LGTAETKCKL 277 (356)
Q Consensus 268 ~g~~~~~~~l 277 (356)
.+. ..+..|
T Consensus 85 ~~~-~~~~~l 93 (95)
T cd07701 85 PVK-TSKAYL 93 (95)
T ss_pred cCc-cEEEEE
Confidence 433 444444
No 191
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.36 E-value=5.4e-12 Score=83.99 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCceEEEEEeccCCC--CeeEEeeCCEEccc----CCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEE
Q psy12422 1 MQNVIKVKVGSTKPP--PTVKWYKGNRELSK----RDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71 (356)
Q Consensus 1 g~~v~l~C~~~g~p~--~~v~W~k~g~~l~~----~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 71 (356)
|+++.|.|.+.+.|. ..+.|.+.++.+.. ..... ......+.|+|.+++.+|+|.|+|.|.|..|...+..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 899999999977654 47899987764421 11001 1122356899999999999999999999999888888
Q ss_pred EEEEe
Q psy12422 72 VVIVE 76 (356)
Q Consensus 72 ~l~v~ 76 (356)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 192
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=1e-11 Score=83.79 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=58.9
Q ss_pred CCceEEEEEeccCCCC-eeEEeeCCEEccc---CCeeEEec----CCeEEEEEeeCCCCC-CeEEEEEEEeCCceeEEEE
Q psy12422 1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEYKCVATNKHGTDETNC 71 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~---~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~~~ 71 (356)
||+++|.|.+.+.|+| .|.|..++..+.. .++.+... +..+.|+|.++...| .|.|.|.|.|..|.+...+
T Consensus 16 G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i 95 (98)
T cd05898 16 GERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAII 95 (98)
T ss_pred CCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEE
Confidence 8999999999888887 4799998887754 34555433 356799999998777 7999999999999998777
Q ss_pred EE
Q psy12422 72 VV 73 (356)
Q Consensus 72 ~l 73 (356)
.|
T Consensus 96 ~L 97 (98)
T cd05898 96 QL 97 (98)
T ss_pred Ee
Confidence 65
No 193
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=3.4e-12 Score=84.30 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=49.8
Q ss_pred CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE
Q psy12422 1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68 (356)
Q Consensus 1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~ 68 (356)
|++|+|+|.+. +.|.+.+.|||+|..+.. ......|.|.+++.+|+|.|+|.+.+..|...
T Consensus 14 G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 14 GEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred CCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 79999999984 567778999999987642 11234799999999999999999999987543
No 194
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.35 E-value=3.8e-12 Score=85.41 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEc-c--------------cCCeeEEe---cCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNREL-S--------------KRDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATN 62 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l-~--------------~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n 62 (356)
|++|+|.|.+.+.|.+.+.||++++.. . .+++.... ..+.++|+|.+++.+|+|.|.|.+.|
T Consensus 7 G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~ 86 (94)
T cd07690 7 GDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVED 86 (94)
T ss_pred CCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECC
Confidence 899999999999999999999876332 1 11222222 45667899999999999999999988
Q ss_pred CCce
Q psy12422 63 KHGT 66 (356)
Q Consensus 63 ~~g~ 66 (356)
..+.
T Consensus 87 ~~~~ 90 (94)
T cd07690 87 KKEE 90 (94)
T ss_pred ccce
Confidence 7654
No 195
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=6.7e-12 Score=84.62 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=60.0
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC-CceEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL-GTAET 273 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~ 273 (356)
..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ....... ..|.|.+++.+|+|.|.|.|.|.. +....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 4567889999999999987 8889999999987765421 1122222 259999999999999999998765 44555
Q ss_pred EEEEec
Q psy12422 274 KCKLTP 279 (356)
Q Consensus 274 ~~~l~p 279 (356)
++.|.+
T Consensus 81 ~~~l~V 86 (89)
T cd04979 81 TYSLNV 86 (89)
T ss_pred EEEEEE
Confidence 666654
No 196
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.34 E-value=7.2e-12 Score=80.60 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=49.6
Q ss_pred ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
.++|+|.+ .|+|++.|+|||||++|..... ....++ ...|+|...+.+|.+.|+|+|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 47899999 7899999999999999964321 111221 2369999889999999999999987654
No 197
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.32 E-value=4.1e-12 Score=79.93 Aligned_cols=60 Identities=32% Similarity=0.514 Sum_probs=46.7
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeE---EEEEeeCCCCCCeEEEEEE
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVA 60 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a 60 (356)
|++++|.|.+ .+.|.+.+.|+|+++.+...........+.. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 7888889999999887764432222222221 2999999999999999986
No 198
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.31 E-value=2e-11 Score=83.38 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCE---------EcccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNR---------ELSKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~---------~l~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~ 70 (356)
|++++|.|.+.+.|.+.+.|++.+. .+...++... ..+..++|+|.+++.+|+|.|.|.+.+... ..+.
T Consensus 12 G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~ 90 (95)
T cd05717 12 GGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAK 90 (95)
T ss_pred CCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEE
Confidence 8999999999888889999986322 1222333332 223456899999999999999999987653 3555
Q ss_pred EEEEE
Q psy12422 71 CVVIV 75 (356)
Q Consensus 71 ~~l~v 75 (356)
+.|.|
T Consensus 91 ~~~~v 95 (95)
T cd05717 91 ATVTV 95 (95)
T ss_pred EEEEC
Confidence 55543
No 199
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.30 E-value=2e-11 Score=81.87 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=56.2
Q ss_pred eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC--------------CCceeEEE---eCCEEEEEEccCCCCCCeEEE
Q psy12422 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--------------SNILDLKY---KNGVASLQIQEVFPEDEGVYV 261 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~ 261 (356)
+.+.+|++++|.|.+.+.+.+.+.|++++..... .+++.... ..+...|+|.+++.+|+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 3578899999999999999999999976633211 11222222 344578999999999999999
Q ss_pred EEEEcCCCceE
Q psy12422 262 CTATNSLGTAE 272 (356)
Q Consensus 262 C~a~n~~g~~~ 272 (356)
|.+.|..+..+
T Consensus 82 C~v~~~~~~~~ 92 (94)
T cd07690 82 CEVEDKKEEVE 92 (94)
T ss_pred EEECCccceEE
Confidence 99999887654
No 200
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.29 E-value=2.6e-11 Score=76.06 Aligned_cols=63 Identities=38% Similarity=0.729 Sum_probs=51.8
Q ss_pred CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
+|+++.|.|.+.+.|.+.+.|++++..+.. .. ........|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 488999999999999999999999988772 11 1223345899999999999999999999765
No 201
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.27 E-value=2.8e-11 Score=81.00 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=49.6
Q ss_pred CCceEEEEEe-c----cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 1 MQNVIKVKVG-S----TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 1 g~~v~l~C~~-~----g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
|.+..|.|.- . ..+.|.|+||||+.++...........+...|.|.+++.+|+|.|+|.|.+..|..
T Consensus 10 ~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 10 STSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred ccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 4577899973 2 34678999999999987543222221223379999999999999999999986544
No 202
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.26 E-value=5.5e-11 Score=79.85 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCC--EEcc----cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE-eCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGN--RELS----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-n~~g~~~~~~~l 73 (356)
|+++.|.|.. +.|.|.+.|||++ .... ... .....++ .|.|.+++.+|+|.|+|.|. |..+.....+.|
T Consensus 11 G~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~-r~~~~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l 86 (91)
T cd05871 11 NNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEE-RLIHTER--GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTL 86 (91)
T ss_pred CCcEEEEEEC-CCCCceEEEEEECCCCCccccccccc-cEEEecC--eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEE
Confidence 7899999997 5889999999843 2211 111 1222333 69999999999999999998 567777777777
Q ss_pred EEe
Q psy12422 74 IVE 76 (356)
Q Consensus 74 ~v~ 76 (356)
.|.
T Consensus 87 ~v~ 89 (91)
T cd05871 87 HVI 89 (91)
T ss_pred EEe
Confidence 775
No 203
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.26 E-value=3e-11 Score=80.59 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=57.2
Q ss_pred CCceeecCCCeEEEEEE-EcCCCCCeEEEEECCEEc-cCCCceeEEEeCCEEEEEEccCCCCCCe-EEEEEEEcCCCce
Q psy12422 196 LTDKTIDDGQCLDLSAV-VKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTA 271 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~-~~g~p~p~i~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~ 271 (356)
...+.+.+|+.+.|.|. ..|+|.|.|.|++++... ....++. .. ..+.|.|.+++.+|+| .|.|.|.|.....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~--~~-~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVS--MG-QNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEE--EC-CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 36678999999999997 599999999999876543 3233322 22 2258999999999999 8999999987654
No 204
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.25 E-value=1.9e-10 Score=77.09 Aligned_cols=75 Identities=35% Similarity=0.582 Sum_probs=61.5
Q ss_pred CCceEEEEEeccCCCCeeEEeeC-CEEcc-cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~-g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.+.+.+.+.|+++ +..+. ..+...........|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus 9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 9 GESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 78999999998888899999998 88886 33444444444568999999999999999999998888777777665
No 205
>smart00409 IG Immunoglobulin.
Probab=99.25 E-value=1.9e-10 Score=77.09 Aligned_cols=75 Identities=35% Similarity=0.582 Sum_probs=61.5
Q ss_pred CCceEEEEEeccCCCCeeEEeeC-CEEcc-cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~-g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
|+++.|.|.+.+.+.+.+.|+++ +..+. ..+...........|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus 9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 9 GESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 78999999998888899999998 88886 33444444444568999999999999999999998888777777665
No 206
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.24 E-value=1.6e-10 Score=77.29 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=66.5
Q ss_pred CceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
..+.|.+|+.+.|.|.++++|+|. +.|.+++..+.......+.... -.+.|.+..+..+|+|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456899999999999999999998 9999988766544332222222 1378999999999999999999999999
Q ss_pred eEEEEEEe
Q psy12422 271 AETKCKLT 278 (356)
Q Consensus 271 ~~~~~~l~ 278 (356)
...++.|.
T Consensus 91 ~s~tF~l~ 98 (101)
T cd05860 91 ASVTFNVY 98 (101)
T ss_pred EEEEEEEE
Confidence 98888774
No 207
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.23 E-value=6.3e-11 Score=79.38 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCceEEEEEec-----------cCCCCeeEEeeCCEEcccCC------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGS-----------TKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~-----------g~p~~~v~W~k~g~~l~~~~------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
||+|.|.|... ..+...++|||++..+.... .++...+. .|.|.++..+|+|.|+|+++|.
T Consensus 15 GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~~rN~ 92 (104)
T cd05896 15 GEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCVLRNS 92 (104)
T ss_pred CCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEEECCC
Confidence 89999999961 12234799999975554321 12333444 8999999999999999999999
Q ss_pred CceeEEEEEEEE
Q psy12422 64 HGTDETNCVVIV 75 (356)
Q Consensus 64 ~g~~~~~~~l~v 75 (356)
......++.|+|
T Consensus 93 t~C~~~~i~l~V 104 (104)
T cd05896 93 TYCMKVSMSLTV 104 (104)
T ss_pred CcceEEEEEEEC
Confidence 877777776654
No 208
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=4.9e-11 Score=78.77 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=53.5
Q ss_pred ceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 198 DKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
...+.+|+.++|.|.+. +.+.+.+.|+|+|..+... .....|.|.+++.+|+|.|.|.|.|..+..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 34688999999999995 4667789999999766421 123479999999999999999999999743
No 209
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.23 E-value=5.9e-11 Score=78.50 Aligned_cols=66 Identities=35% Similarity=0.591 Sum_probs=52.8
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v 75 (356)
|+++.|.|.+.+.|.+.+.|++++..+..... .|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|
T Consensus 14 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 14 GDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp TSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 78999999999999999999999988763221 277788999999999999999654 4455566654
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.22 E-value=1.6e-10 Score=77.24 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCceEEEEEeccCCCCe-eEEeeCCEEcccC-CeeEEecC-----CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKR-DYSMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~-~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
||++.|.|.+.++|+|. +.|.+++..+... .......+ ..+.|++.-++.+|.|.|+|.|.|....++.++.|
T Consensus 18 gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l 97 (101)
T cd05860 18 GENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNV 97 (101)
T ss_pred CCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence 79999999999999998 9999998877532 11122211 33689999999999999999999999999888888
Q ss_pred EEe
Q psy12422 74 IVE 76 (356)
Q Consensus 74 ~v~ 76 (356)
.|.
T Consensus 98 ~v~ 100 (101)
T cd05860 98 YVN 100 (101)
T ss_pred EEe
Confidence 764
No 211
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.21 E-value=5.7e-11 Score=74.69 Aligned_cols=61 Identities=34% Similarity=0.651 Sum_probs=47.7
Q ss_pred CCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCE--EEEEEccCCCCCCeEEEEEE
Q psy12422 204 GQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGV--ASLQIQEVFPEDEGVYVCTA 264 (356)
Q Consensus 204 g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a 264 (356)
|++++|.|.+ .+.+.+.+.|++++................. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7788889999999877665444333333321 13999999999999999986
No 212
>smart00409 IG Immunoglobulin.
Probab=99.21 E-value=7.7e-10 Score=74.03 Aligned_cols=81 Identities=38% Similarity=0.672 Sum_probs=66.8
Q ss_pred ceeecCCCeEEEEEEEcCCCCCeEEEEEC-CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+................|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999998888889999998 88776555555555554678999999999999999999998888777665
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
|.
T Consensus 83 l~ 84 (86)
T smart00409 83 LT 84 (86)
T ss_pred EE
Confidence 53
No 213
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.21 E-value=7.7e-10 Score=74.03 Aligned_cols=81 Identities=38% Similarity=0.672 Sum_probs=66.8
Q ss_pred ceeecCCCeEEEEEEEcCCCCCeEEEEEC-CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+................|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999998888889999998 88776555555555554678999999999999999999998888777665
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
|.
T Consensus 83 l~ 84 (86)
T smart00410 83 LT 84 (86)
T ss_pred EE
Confidence 53
No 214
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.19 E-value=4e-10 Score=76.97 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=56.4
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCE-Ec-------cCCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ-PL-------NSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNS 267 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~-~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 267 (356)
.+..+.+|++++|.|.+.+.|.+.+.|++.+. .+ ....++... .......|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 45678999999999999888889999985221 11 112233221 1234568999999999999999999987
Q ss_pred CCceEEEEEE
Q psy12422 268 LGTAETKCKL 277 (356)
Q Consensus 268 ~g~~~~~~~l 277 (356)
.. ..++..|
T Consensus 85 ~~-~~~~~~~ 93 (95)
T cd05717 85 PV-QTAKATV 93 (95)
T ss_pred CC-ceEEEEE
Confidence 64 3444444
No 215
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.19 E-value=5.8e-11 Score=79.20 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=50.5
Q ss_pred CCceEEEEE-eccCCCCeeEEeeCCEEc-ccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCce
Q psy12422 1 MQNVIKVKV-GSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGT 66 (356)
Q Consensus 1 g~~v~l~C~-~~g~p~~~v~W~k~g~~l-~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~ 66 (356)
|+.+.|.|. ..|.|.|.|.|++++... ..+.+.....+| .|.|.+++.+|+| .|.|.|.|....
T Consensus 18 G~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 18 GDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred CCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--eEEEEEEehhhCCCCeEEEEEccccc
Confidence 789999998 599999999999977553 333333333445 8999999999999 899999997543
No 216
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.18 E-value=1.5e-10 Score=74.46 Aligned_cols=64 Identities=11% Similarity=0.269 Sum_probs=50.3
Q ss_pred eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeC----CEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
.++|+|.. .|+|++.|+||+++.++...... ...+ ..++|.+...+.+|.+.|+|+|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 36899998 77999999999999999754211 1111 13579999999999999999999998853
No 217
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.16 E-value=2.3e-10 Score=76.15 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCeEEEEEEEcCCC--CCeEEEEECCEEccCCCc------eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422 204 GQCLDLSAVVKGDP--EPRVSWTKNGQPLNSSNI------LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275 (356)
Q Consensus 204 g~~~~l~C~~~g~p--~p~i~W~~~g~~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 275 (356)
|+++.|.|.+.+.| ...+.|...+........ .........++|.|.+++.+|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78899999998765 456899887754321110 0001112346899999999999999999999999877776
Q ss_pred EEe
Q psy12422 276 KLT 278 (356)
Q Consensus 276 ~l~ 278 (356)
.|.
T Consensus 81 ~~~ 83 (86)
T cd05862 81 IVI 83 (86)
T ss_pred EEE
Confidence 664
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.16 E-value=1.5e-10 Score=77.48 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=56.3
Q ss_pred eeecCCCeEEEEEEE-cCC----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 199 KTIDDGQCLDLSAVV-KGD----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~-~g~----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
+.+.+|.+..|.|.- +++ +.|.+.|+||+.++...+.......+ ...|.|.+++.+|+|.|+|+|.+..|....
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 457789999999973 444 67789999999998755433222122 347999999999999999999999876544
No 219
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.16 E-value=2.4e-10 Score=76.76 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=55.1
Q ss_pred ceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc----CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE-cCCCc
Q psy12422 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN----SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGT 270 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~ 270 (356)
.+.+.+|+++.|.|.. +.|.|.+.|++. +.... ...+. .... ..|.|.+++.+|+|.|.|.|. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~--~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERL--IHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccE--EEec--CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3568899999999997 488999999983 22211 11222 2222 369999999999999999998 56666
Q ss_pred eEEEEEEec
Q psy12422 271 AETKCKLTP 279 (356)
Q Consensus 271 ~~~~~~l~p 279 (356)
...++.|.+
T Consensus 80 ~~~~~~l~v 88 (91)
T cd05871 80 TLAKYTLHV 88 (91)
T ss_pred EEEEEEEEE
Confidence 666666653
No 220
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.15 E-value=2.7e-10 Score=75.30 Aligned_cols=76 Identities=38% Similarity=0.783 Sum_probs=57.2
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
|.+...+ ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.... + .|.+.+++.+|+|.|+|.|.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCC
Confidence 4444333 568999999999999999999999999987775221 1 277889999999999999999665
Q ss_pred c-eEEEEEE
Q psy12422 270 T-AETKCKL 277 (356)
Q Consensus 270 ~-~~~~~~l 277 (356)
. ....+.|
T Consensus 70 ~~~s~~~~v 78 (80)
T PF13895_consen 70 SNTSTSVNV 78 (80)
T ss_dssp EEEEEEEEE
T ss_pred CeEeeeEEe
Confidence 3 3344443
No 221
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.14 E-value=5.1e-10 Score=74.11 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=47.3
Q ss_pred ceEEEEEecc-CCCCeeEEeeCCEEcccCCeeE-EecCC-----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 3 NVIKVKVGST-KPPPTVKWYKGNRELSKRDYSM-SYSDG-----VVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 3 ~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~-~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
.+.|+|.+.| .|.+.|+|+|+|+++....... ...++ ...|.|.....+|.|.|+|.|.|.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 4789999966 7989999999999986543211 11222 2367888777788899999999875433
No 222
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.10 E-value=1.5e-09 Score=72.80 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEE---------cccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~---------l~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|+++.|+|.+.+.....+.|++-+.. ....++.... .+...+|+|.+++.+|+|.|.|.+...
T Consensus 12 G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 12 GEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 89999999998876667788775533 2233454443 456679999999999999999999764
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.07 E-value=1.1e-09 Score=71.58 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE-eCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-n~~g~~~~~~~l~v 75 (356)
|+.+.|.|...+. .+.+.|++||.++..+.+.....+| |.|..++.+|+|.|.|.+. ++......+..|.|
T Consensus 11 g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G---LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 11 GADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG---LLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred CCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC---CEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 6889999999765 6799999999998755433334444 6799999999999999985 33334444444444
No 224
>PHA03376 BARF1; Provisional
Probab=99.07 E-value=1.6e-08 Score=74.18 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=45.8
Q ss_pred CCceEEEEEec---cCCCCeeEEeeCC----EEc--------c--c--C--CeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422 1 MQNVIKVKVGS---TKPPPTVKWYKGN----REL--------S--K--R--DYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 1 g~~v~l~C~~~---g~p~~~v~W~k~g----~~l--------~--~--~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
||.+.|+|.-. ..+.-.|+|+|.+ ..+ . . . .+.+..+.++.+|.|.+++.+|.|.|+|.
T Consensus 26 GEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~ 105 (221)
T PHA03376 26 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 105 (221)
T ss_pred CCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEEE
Confidence 78999999863 2244579999942 111 0 1 1 12233446888999999999999999999
Q ss_pred EEeCCc
Q psy12422 60 ATNKHG 65 (356)
Q Consensus 60 a~n~~g 65 (356)
......
T Consensus 106 fQkge~ 111 (221)
T PHA03376 106 MKLGET 111 (221)
T ss_pred EEcCCC
Confidence 987543
No 225
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.07 E-value=1.6e-09 Score=71.72 Aligned_cols=66 Identities=18% Similarity=0.377 Sum_probs=48.3
Q ss_pred EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
++|.|.+.| +|.+.++|+++|..+.......... +++ .+.|.|.....+|.|.|+|.|.|......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 689999976 7888999999999886432211111 111 25788888888899999999999875433
No 226
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.05 E-value=2e-09 Score=75.17 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=56.5
Q ss_pred CCceEEEEEeccCC------CCeeEEeeCC-----E-Ecc--cC-------Ce--eEE---ecCCeEEEEEeeCCCCCCe
Q psy12422 1 MQNVIKVKVGSTKP------PPTVKWYKGN-----R-ELS--KR-------DY--SMS---YSDGVVSMEIIDCKPEDSG 54 (356)
Q Consensus 1 g~~v~l~C~~~g~p------~~~v~W~k~g-----~-~l~--~~-------~~--~~~---~~~~~~~L~i~~~~~~D~G 54 (356)
|++|+|.|.....| .+.|.|+|.. . .+. .. ++ ... ...+..+|+|.+++.+|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 89999999986553 4689999962 1 110 11 11 111 1345679999999999999
Q ss_pred EEEEEEEeCCceeEEEEEEEEec
Q psy12422 55 EYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 55 ~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999888888888888864
No 227
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.05 E-value=3.3e-09 Score=71.18 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc--------cCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--------NSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNS 267 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 267 (356)
.++++.+|++++|.|.+.+.....+.|++-+..+ ....++.... ++...+|.|.+++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678999999999999988777778887744222 2344554443 455678999999999999999999764
Q ss_pred C
Q psy12422 268 L 268 (356)
Q Consensus 268 ~ 268 (356)
.
T Consensus 85 p 85 (95)
T cd05881 85 P 85 (95)
T ss_pred c
Confidence 3
No 228
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.04 E-value=1.7e-09 Score=75.58 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCceEEEEEeccCC------CCeeEEeeCCE---E----c-cc-----------CCeeEE-ecCCeEEEEEeeCCCCCCe
Q psy12422 1 MQNVIKVKVGSTKP------PPTVKWYKGNR---E----L-SK-----------RDYSMS-YSDGVVSMEIIDCKPEDSG 54 (356)
Q Consensus 1 g~~v~l~C~~~g~p------~~~v~W~k~g~---~----l-~~-----------~~~~~~-~~~~~~~L~i~~~~~~D~G 54 (356)
|++|+|.|.....| ...|.|||... + + .. .+.... ...+..+|+|.+++.+|+|
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG 81 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG 81 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence 89999999986553 35699999531 1 1 00 111111 1134568999999999999
Q ss_pred EEEEEEEeCCceeEEEEEEEEec
Q psy12422 55 EYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 55 ~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 82 RYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEecccceEEEEEEEEEE
Confidence 99999999988888888888864
No 229
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.04 E-value=2.5e-09 Score=74.36 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=54.4
Q ss_pred CCceEEEEEeccCC------------CCeeEEeeC--CEE---cc--------c----CCeeEEe---cCCeEEEEEeeC
Q psy12422 1 MQNVIKVKVGSTKP------------PPTVKWYKG--NRE---LS--------K----RDYSMSY---SDGVVSMEIIDC 48 (356)
Q Consensus 1 g~~v~l~C~~~g~p------------~~~v~W~k~--g~~---l~--------~----~~~~~~~---~~~~~~L~i~~~ 48 (356)
|++|+|.|.....+ .+.|.|+|. |+. +. . ++..... ..+..+|+|.++
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 89999999985432 358999994 211 10 0 1111111 336679999999
Q ss_pred CCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 49 KPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 49 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999998777777777777764
No 230
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.04 E-value=3.3e-09 Score=73.24 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=51.8
Q ss_pred CCceEEEEEeccCCC---CeeEEeeCC--EEc---------cc-------CCeeEE---ecCCeEEEEEeeCCCCCCeEE
Q psy12422 1 MQNVIKVKVGSTKPP---PTVKWYKGN--REL---------SK-------RDYSMS---YSDGVVSMEIIDCKPEDSGEY 56 (356)
Q Consensus 1 g~~v~l~C~~~g~p~---~~v~W~k~g--~~l---------~~-------~~~~~~---~~~~~~~L~i~~~~~~D~G~Y 56 (356)
|++|+|.|...+... ..+.|+|.. ..+ .. .+.... ...+..+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 899999999853221 257888843 111 10 111111 123567999999999999999
Q ss_pred EEEEEeCCceeEEEEEEEE
Q psy12422 57 KCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 57 ~C~a~n~~g~~~~~~~l~v 75 (356)
.|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777777787776
No 231
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.98 E-value=8.2e-10 Score=71.88 Aligned_cols=73 Identities=27% Similarity=0.502 Sum_probs=48.2
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 266 (356)
|.+...+.......+. ++|.|.+.+.| .+.++|+ +....... ...........|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555555444443444 99999998888 7789999 11111111 1111222346899999999999999999987
No 232
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.96 E-value=1.1e-08 Score=66.17 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=50.2
Q ss_pred ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeE-EecC---CeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEEe
Q psy12422 3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSM-SYSD---GVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIVE 76 (356)
Q Consensus 3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~-~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v~ 76 (356)
.+.|.|.+ .+.|.+.|+|||+|.++....... .... ...+|.|..-+.+|...|+|+|.|..- .......|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 47899999 567999999999999997542111 1112 234788876566666799999998642 23445555554
No 233
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.95 E-value=6.7e-09 Score=73.02 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCE---Ec------------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNR---EL------------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~---~l------------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|.+.+.+...+.|||... +. ...++.... ..+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 13 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 13 GENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred CCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 7899999999877788999999431 10 112333322 246789999999999999999999875
Q ss_pred C
Q psy12422 64 H 64 (356)
Q Consensus 64 ~ 64 (356)
.
T Consensus 93 ~ 93 (109)
T cd04983 93 G 93 (109)
T ss_pred C
Confidence 4
No 234
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.95 E-value=2.7e-09 Score=71.94 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|+|... .|...+.|||+|....... .........|.|.+|+.+|+|.|+|.+.+.
T Consensus 16 G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 16 GKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 79999999885 6677899999998654211 112233447999999999999999999886
No 235
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.95 E-value=3.9e-09 Score=71.19 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=55.5
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
|.+...+. ..|.+|++|+|.|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|...|..
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 55555554 3688999999999886 6777899999987644211 1112334689999999999999999999863
No 236
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.94 E-value=8.3e-09 Score=70.97 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=52.1
Q ss_pred CceEEEEEeccCC---CCeeEEeeCCEE----c-----------cc-CCeeEEecC---CeEEEEEeeCCCCCCeEEEEE
Q psy12422 2 QNVIKVKVGSTKP---PPTVKWYKGNRE----L-----------SK-RDYSMSYSD---GVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 2 ~~v~l~C~~~g~p---~~~v~W~k~g~~----l-----------~~-~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
|+|+|.|.....+ ...|.|+|.... + .. .+......+ +..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 6899999986554 347999995421 1 00 011122221 456999999999999999999
Q ss_pred EEe-CCceeEEEEEEEEe
Q psy12422 60 ATN-KHGTDETNCVVIVE 76 (356)
Q Consensus 60 a~n-~~g~~~~~~~l~v~ 76 (356)
+.. ..|...+.+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 875 57788888887763
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.94 E-value=1.2e-08 Score=71.76 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEE---c-----------cCCCceeEEEe--CCEEEEEEccCCCCCCeE
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP---L-----------NSSNILDLKYK--NGVASLQIQEVFPEDEGV 259 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~---~-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~ 259 (356)
+..+.+.+|++++|.|.+.+.+...+.|++.... . ....++..... .+...|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 4567899999999999998778888999984211 0 01223333322 356899999999999999
Q ss_pred EEEEEEcCCC
Q psy12422 260 YVCTATNSLG 269 (356)
Q Consensus 260 Y~C~a~n~~g 269 (356)
|.|.+.+..+
T Consensus 85 Y~C~~~~~~~ 94 (109)
T cd04983 85 YFCALSESGG 94 (109)
T ss_pred EEEEEecCCC
Confidence 9999997654
No 238
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.94 E-value=1.4e-08 Score=68.16 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=57.6
Q ss_pred eeecCCCeEEEEEEE-c----------CCCCCeEEEEECCEEccCCCc-----eeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422 199 KTIDDGQCLDLSAVV-K----------GDPEPRVSWTKNGQPLNSSNI-----LDLKYKNGVASLQIQEVFPEDEGVYVC 262 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~-~----------g~p~p~i~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C 262 (356)
..+.+|+.+.|.|.. . ......+.|+|++..+..... ..+...+. .|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 468899999999986 2 122447999999755554332 12223333 89999999999999999
Q ss_pred EEEcCCCceEEEEEEe
Q psy12422 263 TATNSLGTAETKCKLT 278 (356)
Q Consensus 263 ~a~n~~g~~~~~~~l~ 278 (356)
++.|...-.+.++.|+
T Consensus 88 ~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 88 VLRNSTYCMKVSMSLT 103 (104)
T ss_pred EECCCCcceEEEEEEE
Confidence 9999998777777654
No 239
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.94 E-value=1.2e-08 Score=71.22 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=55.4
Q ss_pred CCceEEEEEeccCC----------CCeeEEeeC--CEEcc-----------cCCe--eEE-----ecCCeEEEEEeeCCC
Q psy12422 1 MQNVIKVKVGSTKP----------PPTVKWYKG--NRELS-----------KRDY--SMS-----YSDGVVSMEIIDCKP 50 (356)
Q Consensus 1 g~~v~l~C~~~g~p----------~~~v~W~k~--g~~l~-----------~~~~--~~~-----~~~~~~~L~i~~~~~ 50 (356)
|++|+|.|.....+ ...|.|||. ++... ...+ +.. ...+..+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 89999999996543 256999994 22110 1111 111 124667899999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 51 EDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 51 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+|+|.|.|.+.......+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998777778888888864
No 240
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.90 E-value=1.6e-08 Score=69.47 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=48.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCE-----Ecc----c----------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNR-----ELS----K----------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~-----~l~----~----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 61 (356)
|++|.|.|.....+...++|||... .+. . +.+.....++ +|.|.+++.+|+|.|+|.+.
T Consensus 13 G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--SL~I~~v~~~D~G~Y~~~v~ 90 (105)
T cd05774 13 GENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--SLLIQNVTQKDTGFYTLQTI 90 (105)
T ss_pred CCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--cEEEecCCcccCEEEEEEEE
Confidence 7899999965433334899999522 110 0 1122233344 89999999999999999999
Q ss_pred eCC-ceeEEEEEEE
Q psy12422 62 NKH-GTDETNCVVI 74 (356)
Q Consensus 62 n~~-g~~~~~~~l~ 74 (356)
+.. ...+..+.|.
T Consensus 91 ~~~~~~~~~~v~l~ 104 (105)
T cd05774 91 TTNFQVEQATVHLQ 104 (105)
T ss_pred eCCccEEEEEEEEE
Confidence 876 4445555554
No 241
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.88 E-value=3.1e-08 Score=69.15 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 331 (356)
....|+|.+++.+|+|.|.|.+.+..+..+..+.|+|.+
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 668999999999999999999999888888899999875
No 242
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.88 E-value=9.4e-09 Score=70.15 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=52.6
Q ss_pred CCceEEEEEecc-CCCCeeEEeeCCEEcc--c------------CCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGST-KPPPTVKWYKGNRELS--K------------RDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~--~------------~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|.... .....+.|+|....+. . .++ +.....+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 4 G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~ 83 (97)
T cd05775 4 GGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTK 83 (97)
T ss_pred CCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcC
Confidence 899999998854 4456799999643221 0 111 1223345579999999999999999999887
Q ss_pred Ccee-EEEEEEEE
Q psy12422 64 HGTD-ETNCVVIV 75 (356)
Q Consensus 64 ~g~~-~~~~~l~v 75 (356)
.|.. ...+.|.|
T Consensus 84 ~~~~~~~~f~L~v 96 (97)
T cd05775 84 NGVTITKEFTLHI 96 (97)
T ss_pred CCCeEEEEEEEEe
Confidence 6655 45566665
No 243
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.88 E-value=6.4e-09 Score=68.04 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=52.1
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 265 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 265 (356)
..+++.+|+++.|.|...+. .+.+.|+++|..+..+.++..... -|.|.+++.+|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence 45688999999999999864 779999999999876554433322 37899999999999999986
No 244
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.87 E-value=1.4e-08 Score=68.96 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEccc---------------CC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK---------------RD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~---------------~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|.....+...|.|+|+...... .. .+..... ..+|+|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence 89999999987666678999996533210 00 0111111 258999999999999999999887
Q ss_pred Ccee-EEEEEEE
Q psy12422 64 HGTD-ETNCVVI 74 (356)
Q Consensus 64 ~g~~-~~~~~l~ 74 (356)
.+.. ...+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 5433 3344443
No 245
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.87 E-value=8.2e-09 Score=72.54 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=46.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCC--EEcc-----------------cCCeeEEec-CCeEEEEEeeCCCCCCeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGN--RELS-----------------KRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVA 60 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~-----------------~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a 60 (356)
|++|+|.|.+.+ +.+.+.|||.. +... ..++..... ...++|+|.+++.+|+|.|.|.+
T Consensus 13 G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~ 91 (110)
T cd05899 13 GQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCAS 91 (110)
T ss_pred CCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEe
Confidence 789999999977 67889999953 1110 122323222 25679999999999999999999
Q ss_pred EeCC
Q psy12422 61 TNKH 64 (356)
Q Consensus 61 ~n~~ 64 (356)
.+..
T Consensus 92 ~~~~ 95 (110)
T cd05899 92 SLGG 95 (110)
T ss_pred eCCC
Confidence 7653
No 246
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.83 E-value=1.4e-08 Score=70.89 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=47.7
Q ss_pred CCceEEEEEeccC-CCCeeEEeeCCE-----Ec-------------ccCCeeEEecC--CeEEEEEeeCCCCCCeEEEEE
Q psy12422 1 MQNVIKVKVGSTK-PPPTVKWYKGNR-----EL-------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~~~v~W~k~g~-----~l-------------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
|++|+|.|.+.+. +...+.|||... .+ ...++...... +.++|+|.+++.+|+|.|.|.
T Consensus 6 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 85 (105)
T cd00099 6 GESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCA 85 (105)
T ss_pred CCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence 7999999999776 677899999432 11 01122222222 678999999999999999999
Q ss_pred EEeCCc
Q psy12422 60 ATNKHG 65 (356)
Q Consensus 60 a~n~~g 65 (356)
+.+..+
T Consensus 86 v~~~~~ 91 (105)
T cd00099 86 VSLSGG 91 (105)
T ss_pred EecCCC
Confidence 988765
No 247
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.82 E-value=5.7e-08 Score=64.01 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=42.7
Q ss_pred ceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEE-ecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 3 NVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMS-YSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 3 ~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~-~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
.+.|.|.+. ++|.+.|+|||+|+++........ ..++. ..|.+.....+|.+.|+|.|.|....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 478999994 569999999999999864321122 22322 24555443445567999999987544
No 248
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.81 E-value=3.4e-08 Score=69.42 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=52.3
Q ss_pred CCceeecCCCeEEEEEEEcCCCCCeEEEEECCE--Ecc----------------CCCceeEEEeC-CEEEEEEccCCCCC
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ--PLN----------------SSNILDLKYKN-GVASLQIQEVFPED 256 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~--~~~----------------~~~~~~~~~~~-~~~~L~i~~v~~~d 256 (356)
+....+.+|++++|.|.+.+ +.+.+.|+|... .+. ...++...... ...+|.|.+++.+|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 45668999999999999987 777899998321 111 01222222222 45789999999999
Q ss_pred CeEEEEEEEcCCC
Q psy12422 257 EGVYVCTATNSLG 269 (356)
Q Consensus 257 ~G~Y~C~a~n~~g 269 (356)
+|.|.|.+.+..+
T Consensus 84 sg~Y~Ca~~~~~~ 96 (110)
T cd05899 84 SAVYLCASSLGGG 96 (110)
T ss_pred CEEEEEEeeCCCC
Confidence 9999999987543
No 249
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.80 E-value=3.5e-08 Score=68.83 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=51.7
Q ss_pred eecCCCeEEEEEEEcCC-CCCeEEEEECCEE-----c------------cCCCceeEEEeC--CEEEEEEccCCCCCCeE
Q psy12422 200 TIDDGQCLDLSAVVKGD-PEPRVSWTKNGQP-----L------------NSSNILDLKYKN--GVASLQIQEVFPEDEGV 259 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~-----~------------~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~ 259 (356)
++.+|++++|.|.+... +...+.|++.... + ....++...... +..+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57889999999999876 6677999983220 0 011233333333 56799999999999999
Q ss_pred EEEEEEcCCC
Q psy12422 260 YVCTATNSLG 269 (356)
Q Consensus 260 Y~C~a~n~~g 269 (356)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998776
No 250
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=5e-08 Score=68.03 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=51.5
Q ss_pred cCCceeecCCCeEEEEEEEcCCC-CCeEEEEECC--EEc---c---------CCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422 195 KLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNG--QPL---N---------SSNILDLKYKNGVASLQIQEVFPEDEGV 259 (356)
Q Consensus 195 ~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g--~~~---~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 259 (356)
.|....+.+|++++|.|.+.+.. ...+.|+|.. ... . ...++..........|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 34556889999999999997765 5679999832 110 0 0112333233455789999999999999
Q ss_pred EEEEEEcC
Q psy12422 260 YVCTATNS 267 (356)
Q Consensus 260 Y~C~a~n~ 267 (356)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998764
No 251
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.78 E-value=5.1e-08 Score=65.78 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred ceeecCCCeEEEEEEEc-CCCCCe--EEEEECCEEccCCCceeE--EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 198 DKTIDDGQCLDLSAVVK-GDPEPR--VSWTKNGQPLNSSNILDL--KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~-g~p~p~--i~W~~~g~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
...+.+|+.++|.|.+. +.|.+. |.|++++..+........ .......+|++..-+.+|...|+|+|.+..+..
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 34578999999999995 578776 799999999865321110 111224577776555555669999999887653
No 252
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.78 E-value=1.2e-07 Score=62.49 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=44.1
Q ss_pred eEEEEEecc-CCCCeeEEeeCCEEcccCCeeEE-ecC-Ce----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 4 VIKVKVGST-KPPPTVKWYKGNRELSKRDYSMS-YSD-GV----VSMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~-~~~-~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
+.|+|.+.| +|.+.|+|+|||+++........ ..+ +. ..|.|.....+|...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999955 69999999999999875432222 223 22 24555555566778999999987543
No 253
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.77 E-value=7.3e-08 Score=66.79 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCceEEEEEeccCC-------CCeeEEeeC-----CEEc--c-----------cCCeeEEe-----cCCeEEEEEeeCCC
Q psy12422 1 MQNVIKVKVGSTKP-------PPTVKWYKG-----NREL--S-----------KRDYSMSY-----SDGVVSMEIIDCKP 50 (356)
Q Consensus 1 g~~v~l~C~~~g~p-------~~~v~W~k~-----g~~l--~-----------~~~~~~~~-----~~~~~~L~i~~~~~ 50 (356)
|++|+|.|...-.| .+.|.|+|. .+.+ . ..+.+... ..+..+|+|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 68999999964322 368999984 1111 0 01111222 13567999999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 51 EDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 51 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+|+|.|.|.+.......+..+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777778888888864
No 254
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.77 E-value=1.2e-07 Score=66.08 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=35.6
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 331 (356)
+..+|.|.+++.+|+|.|.|.+.+..+..+..+.|+|.+
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 457899999999999999999999999999999998875
No 255
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.76 E-value=1.5e-07 Score=65.33 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=54.9
Q ss_pred CCceEEEEEeccCC-----------CCeeEEeeC-----CE-----Ec-----------ccCCeeEEe-----cCCeEEE
Q psy12422 1 MQNVIKVKVGSTKP-----------PPTVKWYKG-----NR-----EL-----------SKRDYSMSY-----SDGVVSM 43 (356)
Q Consensus 1 g~~v~l~C~~~g~p-----------~~~v~W~k~-----g~-----~l-----------~~~~~~~~~-----~~~~~~L 43 (356)
|++|+|.|...-.| ...|.|+|- |+ .+ ...+..... ..+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999996443 237999983 21 11 001111111 2356799
Q ss_pred EEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 44 ~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
+|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999988888888888864
No 256
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.76 E-value=5e-08 Score=68.43 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=45.5
Q ss_pred CCceEEEEEeccC----CCCeeEE---------------eeCCEEccc--CC--eeEE----ecCCeEEEEEeeCCCCCC
Q psy12422 1 MQNVIKVKVGSTK----PPPTVKW---------------YKGNRELSK--RD--YSMS----YSDGVVSMEIIDCKPEDS 53 (356)
Q Consensus 1 g~~v~l~C~~~g~----p~~~v~W---------------~k~g~~l~~--~~--~~~~----~~~~~~~L~i~~~~~~D~ 53 (356)
|++++|.|..... +...|+| |++|+.... .. .++. ...+..+|.|.+++.+|.
T Consensus 13 G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~ 92 (116)
T cd05879 13 GSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDN 92 (116)
T ss_pred CCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccC
Confidence 8999999999553 3458999 334444321 11 1111 123556999999999999
Q ss_pred eEEEEEEEeCCce
Q psy12422 54 GEYKCVATNKHGT 66 (356)
Q Consensus 54 G~Y~C~a~n~~g~ 66 (356)
|.|+|.+.|..+.
T Consensus 93 G~Y~C~v~n~p~~ 105 (116)
T cd05879 93 GTFTCDVKNPPDI 105 (116)
T ss_pred EEEEEEEEcCCCc
Confidence 9999999987543
No 257
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.75 E-value=3.8e-08 Score=68.65 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCceEEEEEeccCC-CCeeEEeeCC--EE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKP-PPTVKWYKGN--RE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p-~~~v~W~k~g--~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|.+.+.. ...+.|||.. +. +. ..++.....+..+.|+|.+++.+|+|.|.|.+.+.
T Consensus 15 G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 15 GESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 79999999997665 5679999842 11 11 11233334446678999999999999999998653
No 258
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.74 E-value=5.7e-08 Score=66.42 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCceEEEEEeccCCC-CeeEEeeCCE----Ecc---c-------CC----eeE-EecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPP-PTVKWYKGNR----ELS---K-------RD----YSM-SYSDGVVSMEIIDCKPEDSGEYKCVA 60 (356)
Q Consensus 1 g~~v~l~C~~~g~p~-~~v~W~k~g~----~l~---~-------~~----~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a 60 (356)
|++|+|.|....... -.|.|+|... .+. . .. ... ....+..+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 899999998754433 3699998421 110 0 01 111 11224568999999999999999998
Q ss_pred Ee-CCceeEEEEEEEE
Q psy12422 61 TN-KHGTDETNCVVIV 75 (356)
Q Consensus 61 ~n-~~g~~~~~~~l~v 75 (356)
.. ..|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 5777777787776
No 259
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.74 E-value=8e-08 Score=62.14 Aligned_cols=64 Identities=13% Similarity=0.305 Sum_probs=46.6
Q ss_pred eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
.+.|.|.+ .+.|.+.|+|++++.++............ ..++|.|..-..+|...|+|+|.|..-
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 36899999 45788899999999999765321111111 236788877777778899999999764
No 260
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.74 E-value=5.3e-08 Score=69.19 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=46.0
Q ss_pred CCceEEEEEecc--CCCCeeEEeeC--CEEc------------------ccCCeeEEecC--CeEEEEEeeCCCCCCeEE
Q psy12422 1 MQNVIKVKVGST--KPPPTVKWYKG--NREL------------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGEY 56 (356)
Q Consensus 1 g~~v~l~C~~~g--~p~~~v~W~k~--g~~l------------------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y 56 (356)
|++|+|.|.+.+ .+.+.+.|||. |... ...++.+.... ..+.|+|.+++.+|+|.|
T Consensus 13 G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y 92 (116)
T cd04982 13 SKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATY 92 (116)
T ss_pred CCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEE
Confidence 799999999976 67788999994 2211 01233333333 568999999999999999
Q ss_pred EEEEEe
Q psy12422 57 KCVATN 62 (356)
Q Consensus 57 ~C~a~n 62 (356)
.|.+..
T Consensus 93 ~C~~~~ 98 (116)
T cd04982 93 YCAYWE 98 (116)
T ss_pred EEEEec
Confidence 999864
No 261
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.74 E-value=1.9e-08 Score=65.38 Aligned_cols=57 Identities=26% Similarity=0.527 Sum_probs=40.5
Q ss_pred eEEEEEeccCC-CCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422 4 VIKVKVGSTKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62 (356)
Q Consensus 4 v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 62 (356)
+.|.|.+.+.| .+.++|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999998877 7899999 1111111 11112223344899999999999999999987
No 262
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.73 E-value=4.4e-08 Score=66.95 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=46.9
Q ss_pred CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422 1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHG 65 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g 65 (356)
|+.+.|.|.+.|. |. +.|+|++||..+..... .....++.+ .|.|......|.|.|+|+|.+...
T Consensus 13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 5789999999887 64 68999999999875432 222344433 455555555699999999998754
No 263
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.73 E-value=1.1e-07 Score=67.52 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=52.8
Q ss_pred CCceeecCCCeEEEEEEEcC--CCCCeEEEEEC--CEEcc-----------------CCCceeEEEeC--CEEEEEEccC
Q psy12422 196 LTDKTIDDGQCLDLSAVVKG--DPEPRVSWTKN--GQPLN-----------------SSNILDLKYKN--GVASLQIQEV 252 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g--~p~p~i~W~~~--g~~~~-----------------~~~~~~~~~~~--~~~~L~i~~v 252 (356)
+..+.+.+|++++|.|.+.+ .+.+.+.|++. |.... ...++....+. ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 34567889999999999977 67788999983 21110 12334444444 5689999999
Q ss_pred CCCCCeEEEEEEEcC
Q psy12422 253 FPEDEGVYVCTATNS 267 (356)
Q Consensus 253 ~~~d~G~Y~C~a~n~ 267 (356)
+.+|+|.|.|.+...
T Consensus 85 ~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 85 EKEDSATYYCAYWES 99 (116)
T ss_pred CHHHCEEEEEEEecC
Confidence 999999999988653
No 264
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.72 E-value=1.8e-07 Score=64.51 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=50.3
Q ss_pred CCeEEEEEEEcCCC---CCeEEEEECCE--Ec---------cC------CCceeEEE---eCCEEEEEEccCCCCCCeEE
Q psy12422 204 GQCLDLSAVVKGDP---EPRVSWTKNGQ--PL---------NS------SNILDLKY---KNGVASLQIQEVFPEDEGVY 260 (356)
Q Consensus 204 g~~~~l~C~~~g~p---~p~i~W~~~g~--~~---------~~------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y 260 (356)
|++++|.|...... ...+.|++... .+ .. ..+..+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78899999985322 23588887431 11 00 01222211 13457899999999999999
Q ss_pred EEEEEcCCCceEEEEEEe
Q psy12422 261 VCTATNSLGTAETKCKLT 278 (356)
Q Consensus 261 ~C~a~n~~g~~~~~~~l~ 278 (356)
.|.+.|..+..+..+.|.
T Consensus 81 ~C~v~~~~~~~~~~i~l~ 98 (100)
T cd05713 81 TCFFQSDGFYEEATVELK 98 (100)
T ss_pred EEEEecCCcEEEEEEEEE
Confidence 999999888777777664
No 265
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.72 E-value=9.5e-08 Score=65.65 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=50.8
Q ss_pred eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC--------C-----------CceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--------S-----------NILDLKYKNGVASLQIQEVFPEDEGV 259 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~--------~-----------~~~~~~~~~~~~~L~i~~v~~~d~G~ 259 (356)
..+.+|+++.|.|.....+...+.|+|+...... . .+..+ ..+++|.|++++.+|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~---~~ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI---YPNGSLLIQNVTQKDTGF 84 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE---eCCCcEEEecCCcccCEE
Confidence 3578899999998664333447999995321110 0 01111 112489999999999999
Q ss_pred EEEEEEcCC-CceEEEEEE
Q psy12422 260 YVCTATNSL-GTAETKCKL 277 (356)
Q Consensus 260 Y~C~a~n~~-g~~~~~~~l 277 (356)
|+|.+.+.. ...+..+.+
T Consensus 85 Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 85 YTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEeCCccEEEEEEEE
Confidence 999999987 455555554
No 266
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.71 E-value=8.1e-08 Score=65.90 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=45.9
Q ss_pred CCceEEEEEeccC--CCCeeEEeeCC---EEc--c----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTK--PPPTVKWYKGN---REL--S----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~--p~~~v~W~k~g---~~l--~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|...+. ....+.|||.. .+. . ..++......+.+.|+|.+++.+|+|.|.|.+.+.
T Consensus 6 G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 6 GETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 8999999998664 45679999932 111 0 12344444556778999999999999999998653
No 267
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.68 E-value=3e-07 Score=59.24 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=50.1
Q ss_pred CCceEEEEEecc--CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGST--KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
||+++|+|.... .|.+.|+|+.-+...- .....+..+|.+.++...|+|.++|.+.-..-.....+.+.|.
T Consensus 14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 899999999954 4455999997544321 1112233489999999999999999997665555555666554
No 268
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.67 E-value=3.2e-07 Score=62.97 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=50.1
Q ss_pred CceEEEEEeccCC---CCeeEEeeC--CE---Ec---c-c------CCe--eEEe----cCCeEEEEEeeCCCCCCeEEE
Q psy12422 2 QNVIKVKVGSTKP---PPTVKWYKG--NR---EL---S-K------RDY--SMSY----SDGVVSMEIIDCKPEDSGEYK 57 (356)
Q Consensus 2 ~~v~l~C~~~g~p---~~~v~W~k~--g~---~l---~-~------~~~--~~~~----~~~~~~L~i~~~~~~D~G~Y~ 57 (356)
.+|+|.|.....+ ...|.|+|. +. .+ . . ..+ +..+ ..+..+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3789999985443 337999993 21 11 1 0 000 1112 224568999999999999999
Q ss_pred EEEEe-CCceeEEEEEEEE
Q psy12422 58 CVATN-KHGTDETNCVVIV 75 (356)
Q Consensus 58 C~a~n-~~g~~~~~~~l~v 75 (356)
|.+.+ ..|..++.+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99988 5777777777776
No 269
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.67 E-value=1.3e-07 Score=63.85 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCceEEEEEe-ccCCCCe--eEEeeCCEEcccCCeeE---EecCCeEEEEEeeCCCCCCe-EEEEEEEeCCce
Q psy12422 1 MQNVIKVKVG-STKPPPT--VKWYKGNRELSKRDYSM---SYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGT 66 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~--v~W~k~g~~l~~~~~~~---~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~ 66 (356)
|+.++|+|.+ .+.|.+. |+|||+++.+....+.. .......+|++.. .++|.| .|+|+|.+..+.
T Consensus 16 G~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 16 GKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLRP 87 (100)
T ss_pred CCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccCc
Confidence 7899999999 5578886 79999999996533211 1122334677764 555655 999999887544
No 270
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.65 E-value=1.1e-07 Score=65.04 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=50.2
Q ss_pred cCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCc-eeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 202 DDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNI-LDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 202 ~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~-~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
..|+.+.|.|.+.|+ |. +.|+|++||..+..... .... ..++ .+.|.+.....+|.|.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999987 53 57999999999876543 1111 1111 245677777667999999999998764
No 271
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.65 E-value=2.8e-07 Score=60.58 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=42.9
Q ss_pred eEEEEEecc-CCCCeeEEeeCCEEcccCCeeEE--ecCCe----EEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422 4 VIKVKVGST-KPPPTVKWYKGNRELSKRDYSMS--YSDGV----VSMEIIDCKPEDSGEYKCVATNKHG 65 (356)
Q Consensus 4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~--~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g 65 (356)
+.|+|.+.| +|.+.|+|+|||+.+........ ..++. ..|.|..-...|...|+|++.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999955 78889999999999865432221 22222 3566665445667799999988643
No 272
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.65 E-value=1.7e-07 Score=66.08 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCceEEEEEeccCC----CCeeEEeeC----CEE--cc----------cCCe--eEE----ecCCeEEEEEeeCCCCCCe
Q psy12422 1 MQNVIKVKVGSTKP----PPTVKWYKG----NRE--LS----------KRDY--SMS----YSDGVVSMEIIDCKPEDSG 54 (356)
Q Consensus 1 g~~v~l~C~~~g~p----~~~v~W~k~----g~~--l~----------~~~~--~~~----~~~~~~~L~i~~~~~~D~G 54 (356)
|++++|.|.....+ ...|.||+. +.+ +- ..++ +.. ...+..+|+|.+++.+|+|
T Consensus 13 G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G 92 (115)
T cd05880 13 GTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNG 92 (115)
T ss_pred CCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCE
Confidence 79999999985433 235999851 221 10 0111 111 1234568999999999999
Q ss_pred EEEEEEEeCCc
Q psy12422 55 EYKCVATNKHG 65 (356)
Q Consensus 55 ~Y~C~a~n~~g 65 (356)
.|.|.+.|..+
T Consensus 93 ~Y~C~v~~~~~ 103 (115)
T cd05880 93 TYTCQVKNPPD 103 (115)
T ss_pred EEEEEEEeCCC
Confidence 99999998654
No 273
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.65 E-value=3.4e-07 Score=64.23 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.3
Q ss_pred CceeecCCCeEEEEEEEcCC----CCCeEEEEE---------------CCEEccC-C----CceeEEE--eCCEEEEEEc
Q psy12422 197 TDKTIDDGQCLDLSAVVKGD----PEPRVSWTK---------------NGQPLNS-S----NILDLKY--KNGVASLQIQ 250 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~----p~p~i~W~~---------------~g~~~~~-~----~~~~~~~--~~~~~~L~i~ 250 (356)
..+.+..|+++.|.|..... +...|.|++ +|..... . .++.+.. ..+..+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 34578899999999999653 345799933 3333221 0 1232221 2345789999
Q ss_pred cCCCCCCeEEEEEEEcCCCc
Q psy12422 251 EVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 251 ~v~~~d~G~Y~C~a~n~~g~ 270 (356)
+++.+|.|+|+|.+.|.-+.
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred cCCcccCEEEEEEEEcCCCc
Confidence 99999999999999998764
No 274
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.64 E-value=2.5e-07 Score=63.46 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=48.9
Q ss_pred eecCCCeEEEEEEEcCC--CCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422 200 TIDDGQCLDLSAVVKGD--PEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~--p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 263 (356)
.+.+|++++|.|.+.+. ....+.|++. |.... ...++..........|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 47889999999999765 4567999982 21111 01234444445667899999999999999998
Q ss_pred EEcC
Q psy12422 264 ATNS 267 (356)
Q Consensus 264 a~n~ 267 (356)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8754
No 275
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.64 E-value=2.2e-07 Score=61.20 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=45.1
Q ss_pred eEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 206 CLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 206 ~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
.+.|.|.+.+ +|.+.|.|+++|..+...........++ .+.|.+.....++.+.|+|+|.|.....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 3689999954 6889999999999886433111111121 2356665556667789999999987653
No 276
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.63 E-value=4.9e-07 Score=62.10 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=49.4
Q ss_pred CeEEEEEEEcCCC---CCeEEEEECCEE----c-----------cC--CCceeEEEe-CCEEEEEEccCCCCCCeEEEEE
Q psy12422 205 QCLDLSAVVKGDP---EPRVSWTKNGQP----L-----------NS--SNILDLKYK-NGVASLQIQEVFPEDEGVYVCT 263 (356)
Q Consensus 205 ~~~~l~C~~~g~p---~p~i~W~~~g~~----~-----------~~--~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~ 263 (356)
++++|.|.....+ ...|.|+|.... + .. ..+..+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999997654 346999994321 0 00 011111111 1457899999999999999999
Q ss_pred EEc-CCCceEEEEEEe
Q psy12422 264 ATN-SLGTAETKCKLT 278 (356)
Q Consensus 264 a~n-~~g~~~~~~~l~ 278 (356)
+.+ ..|.......|.
T Consensus 81 v~~~~~g~~~~~~~l~ 96 (98)
T cd05718 81 FATFPQGNRQKVTTLT 96 (98)
T ss_pred EEeCCCCcEEEEEEEE
Confidence 875 667777777664
No 277
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=4.1e-07 Score=63.32 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=51.9
Q ss_pred CCCeEEEEEEEcCCC------------CCeEEEEEC--CEE---cc-CC----------CceeEEE---eCCEEEEEEcc
Q psy12422 203 DGQCLDLSAVVKGDP------------EPRVSWTKN--GQP---LN-SS----------NILDLKY---KNGVASLQIQE 251 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p------------~p~i~W~~~--g~~---~~-~~----------~~~~~~~---~~~~~~L~i~~ 251 (356)
.|++++|.|...... .+.|.|+|- |.. +. .. +++.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999985432 357999983 211 10 00 1222221 23567999999
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 252 VFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 252 v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
++.+|+|.|.|.+.+........+.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEE
Confidence 999999999999998877776666654
No 278
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.61 E-value=2.4e-07 Score=62.76 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=50.1
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 266 (356)
|.+...+ ...+.+|++++|.|.... +...+.|+|+|...................|.|.+++.+|+|.|.|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3444433 335889999999998864 55679999988653321000000112245799999999999999998754
No 279
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.59 E-value=4.9e-07 Score=63.76 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=49.1
Q ss_pred CceeecCCCeEEEEEEEcCCC----CCeEEEEEC----CEE--cc---------CC----CceeEE--EeCCEEEEEEcc
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDP----EPRVSWTKN----GQP--LN---------SS----NILDLK--YKNGVASLQIQE 251 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~~----g~~--~~---------~~----~~~~~~--~~~~~~~L~i~~ 251 (356)
..+.+.+|++++|.|.....+ ...|.|++. +.. +. .. .++.+. ...+..+|+|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 456889999999999985433 235999751 211 10 01 111111 112356899999
Q ss_pred CCCCCCeEEEEEEEcCCCc
Q psy12422 252 VFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 252 v~~~d~G~Y~C~a~n~~g~ 270 (356)
++.+|+|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999987764
No 280
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.58 E-value=6.5e-07 Score=58.95 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=45.0
Q ss_pred EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCC-----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
++|.|.+.| +|.+.|+|+++|..+............+ .+.|.+.....+|...|+|+|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 589999965 6999999999999887543212222121 145666566667788999999998753
No 281
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.57 E-value=3.8e-07 Score=61.83 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCC--------C------ce--eEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSS--------N------IL--DLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~--------~------~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 267 (356)
|++|+|.|.....+...|.|+++....... . .+ ...... ...|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence 789999999876666789999965332110 0 00 011112 268999999999999999999988
Q ss_pred CCc
Q psy12422 268 LGT 270 (356)
Q Consensus 268 ~g~ 270 (356)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 754
No 282
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.55 E-value=5.7e-07 Score=63.75 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCceEEEEEeccCC----CCeeEEeeCCE------Ecc-----------cCCee--EE----ecCCeEEEEEeeCCCCCC
Q psy12422 1 MQNVIKVKVGSTKP----PPTVKWYKGNR------ELS-----------KRDYS--MS----YSDGVVSMEIIDCKPEDS 53 (356)
Q Consensus 1 g~~v~l~C~~~g~p----~~~v~W~k~g~------~l~-----------~~~~~--~~----~~~~~~~L~i~~~~~~D~ 53 (356)
|++|+|.|...... ...+.|++... .+- ..++. +. ...+.++|+|.+++.+|+
T Consensus 13 G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~ 92 (116)
T cd05715 13 GSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDN 92 (116)
T ss_pred CCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccC
Confidence 78999999985432 24699987311 110 01111 11 122457899999999999
Q ss_pred eEEEEEEEeCCc
Q psy12422 54 GEYKCVATNKHG 65 (356)
Q Consensus 54 G~Y~C~a~n~~g 65 (356)
|.|.|.+.|...
T Consensus 93 G~Y~C~v~~~~~ 104 (116)
T cd05715 93 GTYTCDVKNPPD 104 (116)
T ss_pred EEEEEEEEeCCC
Confidence 999999998643
No 283
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.55 E-value=6.6e-07 Score=58.78 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=45.1
Q ss_pred EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
++|.|.+.| +|.+.|+|++||..+............ ..+.|.+..-..++...|+|+|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999965 788889999999998654322222211 1246777666667788999999987654
No 284
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.55 E-value=2.6e-07 Score=62.58 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 61 (356)
|++|+|.|.... +.-.+.|||+|........ ..........+.|.+++.+|+|.|.|...
T Consensus 15 G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 15 GENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 899999998754 4567999999876432110 01112234478999999999999999975
No 285
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.55 E-value=5e-07 Score=61.64 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=51.0
Q ss_pred CCCeEEEEEEEcC-CCCCeEEEEECCEEccCC-------------Cce--eEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422 203 DGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSS-------------NIL--DLKYKNGVASLQIQEVFPEDEGVYVCTATN 266 (356)
Q Consensus 203 ~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~-------------~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 266 (356)
.|++|+|.|.... .....+.|++....+... ..+ ......+..+|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 6999999998854 445569999864322110 011 122334457899999999999999999998
Q ss_pred CCCce-EEEEEE
Q psy12422 267 SLGTA-ETKCKL 277 (356)
Q Consensus 267 ~~g~~-~~~~~l 277 (356)
..|.. ...+.|
T Consensus 83 ~~~~~~~~~f~L 94 (97)
T cd05775 83 KNGVTITKEFTL 94 (97)
T ss_pred CCCCeEEEEEEE
Confidence 87654 334443
No 286
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.53 E-value=1.5e-06 Score=59.07 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEc-CCcceEEEEEEEEE
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTVR 330 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~ 330 (356)
..++|.|.+++.+|+|.|+|.+.| +.|..++.+.|.|.
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 557899999999999999999999 78988999999873
No 287
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.52 E-value=1e-06 Score=59.86 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=50.0
Q ss_pred ceEEEEEeccC-CCC---eeEEeeC--CE--Ecc--c----------CCeeEEe---cCCeEEEEEeeCCCCCCeEEEEE
Q psy12422 3 NVIKVKVGSTK-PPP---TVKWYKG--NR--ELS--K----------RDYSMSY---SDGVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 3 ~v~l~C~~~g~-p~~---~v~W~k~--g~--~l~--~----------~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
.|+|.|..... |.. .|.|.|. +. .+. . -+.++.. .-+..+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999642 222 5999883 11 110 0 0011111 12345899999999999999999
Q ss_pred EEe-CCceeEEEEEEEEe
Q psy12422 60 ATN-KHGTDETNCVVIVE 76 (356)
Q Consensus 60 a~n-~~g~~~~~~~l~v~ 76 (356)
+.+ ..|..++.+.|.|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 999 68888888888773
No 288
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.51 E-value=1.1e-05 Score=56.04 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=36.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 331 (356)
+..+|.|.+++.+|+|.|.|++.+.....+..+.|+|++
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 568999999999999999999999998899999999875
No 289
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.50 E-value=1.2e-06 Score=58.89 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=51.0
Q ss_pred CceEEEEEeccCC-CCeeEEeeCC----EEcc--c--------CC--eeEEe---cCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422 2 QNVIKVKVGSTKP-PPTVKWYKGN----RELS--K--------RD--YSMSY---SDGVVSMEIIDCKPEDSGEYKCVAT 61 (356)
Q Consensus 2 ~~v~l~C~~~g~p-~~~v~W~k~g----~~l~--~--------~~--~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~ 61 (356)
++|+|.|.....+ ...|+|.|.. ..+. . .. .++.. ..+..+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4799999986433 3479998832 1121 0 01 01111 2234589999999999999999975
Q ss_pred e-CCceeEEEEEEEEe
Q psy12422 62 N-KHGTDETNCVVIVE 76 (356)
Q Consensus 62 n-~~g~~~~~~~l~v~ 76 (356)
+ ..|..++++.|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 4 68998998888773
No 290
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.49 E-value=3.7e-06 Score=62.48 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=64.7
Q ss_pred ceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 198 DKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
.++|.+|++++|.|... +...+.+.|+|....+ . .|.+ .| ..
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~I--------------a-------------tY~~-----~g-----~~ 66 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTI--------------A-------------GYGP-----CG-----PV 66 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCE--------------E-------------EEec-----CC-----cE
Confidence 46789999999999984 6667789999843100 0 0111 01 01
Q ss_pred EecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEc-CCc-ceEEEEEEEEEecCCC
Q psy12422 277 LTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN-SLG-TAETKCKLTVRSTPAA 335 (356)
Q Consensus 277 l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~g-~~~~~~~l~V~~~p~~ 335 (356)
+.+....++.-+......+.|+|++|+.+|+|.|.|...- +.| ..+..+.|.|.....+
T Consensus 67 i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~~~ 127 (189)
T PHA02987 67 IVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDSYT 127 (189)
T ss_pred EChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchhhc
Confidence 1111111111122334668999999999999999998643 556 7788999999987543
No 291
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.49 E-value=1.1e-06 Score=56.06 Aligned_cols=61 Identities=36% Similarity=0.604 Sum_probs=47.0
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCe-----eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDY-----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
+.|.|.+.+.|.+.+.|++++........ ..........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 57999998878889999999877654321 11223345689999999999999999998865
No 292
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.49 E-value=2.5e-06 Score=59.14 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 331 (356)
+..+|.|.+++.+|+|.|.|.+.......+..+.|+|.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 678999999999999999999999877888899999875
No 293
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.47 E-value=1.9e-06 Score=60.24 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=51.6
Q ss_pred CCCeEEEEEEEcCCC----------CCeEEEEEC--CEEcc----CC----------CceeEE---EeCCEEEEEEccCC
Q psy12422 203 DGQCLDLSAVVKGDP----------EPRVSWTKN--GQPLN----SS----------NILDLK---YKNGVASLQIQEVF 253 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p----------~p~i~W~~~--g~~~~----~~----------~~~~~~---~~~~~~~L~i~~v~ 253 (356)
.|++++|.|.....+ ...|.|+|. +.... .. .++.+. ...+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999996544 245999984 21110 00 122221 12345789999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 254 PEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 254 ~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
.+|+|.|.|.+.......+..+.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEE
Confidence 9999999999998776666666664
No 294
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.47 E-value=8.9e-07 Score=60.75 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCceEEEEEecc-CCCCeeEEeeCCE-----Ec-------c--cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGST-KPPPTVKWYKGNR-----EL-------S--KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~~v~W~k~g~-----~l-------~--~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|++|+|.|.... .+...+.|||... .+ . ..++... ..++.++|+|.+++.+|+|.|.|.+...
T Consensus 7 G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 7 GGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred CCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence 899999999854 3456789999531 11 0 1223332 2356789999999999999999998765
Q ss_pred C
Q psy12422 64 H 64 (356)
Q Consensus 64 ~ 64 (356)
.
T Consensus 87 ~ 87 (98)
T cd05716 87 G 87 (98)
T ss_pred C
Confidence 3
No 295
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.46 E-value=6.5e-07 Score=62.41 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=42.7
Q ss_pred CCceEEEEEeccC-CCCeeEEeeC--C---EEc------c------------cCCeeE--EecCCeEEEEEeeCCCCCCe
Q psy12422 1 MQNVIKVKVGSTK-PPPTVKWYKG--N---REL------S------------KRDYSM--SYSDGVVSMEIIDCKPEDSG 54 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~~~v~W~k~--g---~~l------~------------~~~~~~--~~~~~~~~L~i~~~~~~D~G 54 (356)
|++|+|.|.+.+. ....+.|||. | +.+ . ..++.. ...+..+.|+|.+++.+|+|
T Consensus 6 G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg 85 (107)
T cd07700 6 NNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSG 85 (107)
T ss_pred CCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCE
Confidence 8999999998653 3457999993 2 110 0 112222 22344578999999999999
Q ss_pred EEEEEEEe
Q psy12422 55 EYKCVATN 62 (356)
Q Consensus 55 ~Y~C~a~n 62 (356)
.|.|...+
T Consensus 86 ~YyCa~~~ 93 (107)
T cd07700 86 TYFCMTVG 93 (107)
T ss_pred EEEEeEcC
Confidence 99999753
No 296
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.45 E-value=1.4e-06 Score=61.64 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=50.1
Q ss_pred CCceEEEEEec-cCCCCeeEEeeCCE-----Ecc---------------cCCeeE--EecCCeEEEEEeeCCCCCCeEEE
Q psy12422 1 MQNVIKVKVGS-TKPPPTVKWYKGNR-----ELS---------------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYK 57 (356)
Q Consensus 1 g~~v~l~C~~~-g~p~~~v~W~k~g~-----~l~---------------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~ 57 (356)
|++|.|.|... ......+.|++... .+. ..+... ....+.++|+|.+++.+|+|.|.
T Consensus 16 G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~ 95 (114)
T PF07686_consen 16 GESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYF 95 (114)
T ss_dssp TSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEE
T ss_pred CCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEE
Confidence 78999999998 55566899999321 111 011111 12245679999999999999999
Q ss_pred EEEEeC-CceeEEEEEEEE
Q psy12422 58 CVATNK-HGTDETNCVVIV 75 (356)
Q Consensus 58 C~a~n~-~g~~~~~~~l~v 75 (356)
|.+... .......+.|.|
T Consensus 96 C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 96 CQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEESSEEEEEEEEEEEE
T ss_pred EEEEECCCCEECCcEEEEC
Confidence 999886 333334455543
No 297
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.44 E-value=1.8e-06 Score=64.08 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCceEEEEEec-cCCCCeeEEeeCCEEcc----------c---CCee-EEecCCeEEEEEeeCCCCCCeEEEEEEEe-CC
Q psy12422 1 MQNVIKVKVGS-TKPPPTVKWYKGNRELS----------K---RDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATN-KH 64 (356)
Q Consensus 1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~----------~---~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n-~~ 64 (356)
||+|.|.|... +...+.++|+|..+.+. . ++.. .........|+|.+++.+|+|.|.|...- ..
T Consensus 30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~ 109 (189)
T PHA02987 30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLS 109 (189)
T ss_pred CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCC
Confidence 78999999984 65678899999643221 0 1111 11222345899999999999999998754 45
Q ss_pred c-eeEEEEEEEEecc
Q psy12422 65 G-TDETNCVVIVESE 78 (356)
Q Consensus 65 g-~~~~~~~l~v~~~ 78 (356)
| ..+..+-|+|...
T Consensus 110 G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 110 KNNEKGVVCLNVTTD 124 (189)
T ss_pred CCCceeEEEEEEEch
Confidence 6 7788888988764
No 298
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.41 E-value=1.1e-06 Score=62.45 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=44.7
Q ss_pred CCceEEEEEeccC-CCCeeEEeeC--CEE---c-c---------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTK-PPPTVKWYKG--NRE---L-S---------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATN 62 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~~~v~W~k~--g~~---l-~---------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n 62 (356)
|++|+|.|...+. ....+.|||. +.. + . .+++... ...+.++|+|.+++.+|+|.|.|.+..
T Consensus 14 G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 14 GEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 8999999998643 4567999993 221 1 0 1233332 234578999999999999999999875
Q ss_pred C
Q psy12422 63 K 63 (356)
Q Consensus 63 ~ 63 (356)
.
T Consensus 94 ~ 94 (116)
T cd07706 94 L 94 (116)
T ss_pred C
Confidence 3
No 299
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.41 E-value=5.7e-07 Score=66.13 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=47.0
Q ss_pred EEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCCcccCCCCceeEee
Q psy12422 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIV 355 (356)
Q Consensus 295 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~ 355 (356)
+.|+|.+++.+|+|.|.|.+.+..|..+..+.|.|..+|.+...+.+.... .+....+.|
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~-~~~~~~L~C 60 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSM-IEEPQTLIC 60 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceee-cCCcEEEEE
Confidence 369999999999999999999999999999999999999886655443222 233345555
No 300
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.40 E-value=2.5e-06 Score=60.50 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=50.8
Q ss_pred CCceeecCCCeEEEEEEEcCC-CCCeEEEEEC--CEEc------------cCCCceeEEE--eCCEEEEEEccCCCCCCe
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKN--GQPL------------NSSNILDLKY--KNGVASLQIQEVFPEDEG 258 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~--g~~~------------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G 258 (356)
+..+.+.+|++++|.|..... ....+.|++. +..+ ...+++.... ..+...|+|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 355678999999999998653 4566999982 2111 0123343332 244678999999999999
Q ss_pred EEEEEEEcC
Q psy12422 259 VYVCTATNS 267 (356)
Q Consensus 259 ~Y~C~a~n~ 267 (356)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999998854
No 301
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.40 E-value=2.4e-06 Score=60.54 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=49.0
Q ss_pred CCceeecCCCeEEEEEEEcCCC----CCeEEEEECCE------Ec-c---------CCC----ceeEEE--eCCEEEEEE
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDP----EPRVSWTKNGQ------PL-N---------SSN----ILDLKY--KNGVASLQI 249 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~~g~------~~-~---------~~~----~~~~~~--~~~~~~L~i 249 (356)
|..+.+.+|++++|.|...... ...+.|++... .+ . ... ++.+.. ..+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3456788999999999985432 24599986211 10 0 011 111111 123478999
Q ss_pred ccCCCCCCeEEEEEEEcCCCc
Q psy12422 250 QEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 250 ~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
.+++.+|+|.|.|.+.|.-..
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987653
No 302
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.39 E-value=1.6e-06 Score=58.32 Aligned_cols=68 Identities=22% Similarity=0.441 Sum_probs=46.0
Q ss_pred CCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422 204 GQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGTA 271 (356)
Q Consensus 204 g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 271 (356)
|+.+.|.|.+ .|+|+|.|+|+.++..+........... .+ .+.|.+..-..++...++|+|.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 7899999977 7899999999999887722111111111 11 2467776655567789999999987543
No 303
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.38 E-value=1.2e-06 Score=60.64 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCceEEEEEeccCCCCeeEEeeCC----EEc---c---c-------------CCeeEEecCCeEEEEEeeCCCCCCeEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGN----REL---S---K-------------RDYSMSYSDGVVSMEIIDCKPEDSGEYK 57 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g----~~l---~---~-------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 57 (356)
|++|+|.|...+.-...+.|||.. ... . . .++........+.|+|.+++.+|+|.|.
T Consensus 6 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY~ 85 (104)
T cd05720 6 GQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYYF 85 (104)
T ss_pred CCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEEE
Confidence 899999999855444569999942 111 0 0 0122223345678999999999999999
Q ss_pred EEEEe
Q psy12422 58 CVATN 62 (356)
Q Consensus 58 C~a~n 62 (356)
|.+.+
T Consensus 86 Ca~~~ 90 (104)
T cd05720 86 CSVAS 90 (104)
T ss_pred EEEcc
Confidence 98753
No 304
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.38 E-value=3.3e-06 Score=56.92 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=46.3
Q ss_pred CceEEEEEecc-CCCCeeEEeeCCE----Eccc----------CC--eeEEec---CCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422 2 QNVIKVKVGST-KPPPTVKWYKGNR----ELSK----------RD--YSMSYS---DGVVSMEIIDCKPEDSGEYKCVAT 61 (356)
Q Consensus 2 ~~v~l~C~~~g-~p~~~v~W~k~g~----~l~~----------~~--~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~ 61 (356)
|+++|.|.... .....|+|.|... .+.. .. .++... ....+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 68999999842 2345789998421 1110 11 112211 234589999999999999999997
Q ss_pred eC-CceeEEEEEE
Q psy12422 62 NK-HGTDETNCVV 73 (356)
Q Consensus 62 n~-~g~~~~~~~l 73 (356)
.- .|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 64 6666665544
No 305
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.35 E-value=5e-06 Score=57.05 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCC---CCeEEEEEC--CE---Ec---c-C---------CCceeEEE--eCCEEEEEEccCCCCCCeEEEE
Q psy12422 206 CLDLSAVVKGDP---EPRVSWTKN--GQ---PL---N-S---------SNILDLKY--KNGVASLQIQEVFPEDEGVYVC 262 (356)
Q Consensus 206 ~~~l~C~~~g~p---~p~i~W~~~--g~---~~---~-~---------~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 262 (356)
+++|.|.....+ ...|.|+|. +. .+ . . .++..+.. ..+..+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999885433 336999982 21 11 0 0 02233322 2235689999999999999999
Q ss_pred EEEc-CCCceEEEEEEe
Q psy12422 263 TATN-SLGTAETKCKLT 278 (356)
Q Consensus 263 ~a~n-~~g~~~~~~~l~ 278 (356)
.+.+ ..|..++.+.|.
T Consensus 82 ~v~~~p~g~~~~~~~L~ 98 (100)
T cd05888 82 RVITFPAGNFEAELVLT 98 (100)
T ss_pred EEEeCCCCCeeeEEEEE
Confidence 9998 666666666554
No 306
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.34 E-value=3.7e-06 Score=57.64 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=48.9
Q ss_pred eeecCCCeEEEEEEEcC-CCCCeEEEEECCEE-----c--------cCCCceeEEE--eCCEEEEEEccCCCCCCeEEEE
Q psy12422 199 KTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQP-----L--------NSSNILDLKY--KNGVASLQIQEVFPEDEGVYVC 262 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~-----~--------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 262 (356)
+.+.+|++++|.|.... .....+.|+|.... + ....++.+.. ..+...|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 36789999999999865 34566899984311 1 0112333321 2456789999999999999999
Q ss_pred EEEcCC
Q psy12422 263 TATNSL 268 (356)
Q Consensus 263 ~a~n~~ 268 (356)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887764
No 307
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.32 E-value=4.5e-06 Score=56.45 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCce-eEEEe-C-CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 204 GQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNIL-DLKYK-N-GVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 204 g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~-~~~~~-~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
|+.++|.|.+.|+ |+. .++|.++|..+...... ....+ + .......-.+...+.+.|+|++.+..-.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999985 544 79999999643322111 11111 1 1122223344445889999999887654
No 308
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.32 E-value=7.3e-06 Score=52.87 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=40.9
Q ss_pred ceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 3 NVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 3 ~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
.++|.|.+.|. |+ ..++|+|||+++..... .....++.+ .|.|......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 47899999775 55 58999999997543211 112234443 45555445567789999997753
No 309
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.31 E-value=2.6e-06 Score=57.27 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=44.0
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCCEEcccC--CeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKR--DYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
|+.+.|+|.+ .|+|+|.|+|+.++..+... .......++. +.|++..-+..+...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 4689999987 78999999999999877211 1112223322 35666654445677999999987543
No 310
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.29 E-value=6.6e-06 Score=52.28 Aligned_cols=64 Identities=41% Similarity=0.739 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCCCeEEEEECCEEccCCCce----eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNIL----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
+.|.|.+.+.+.+.+.|++++......... ..........|.|.+++.+|.|.|.|.+.+..+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 468999988778889999988776543321 1112233468999999999999999999988743
No 311
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.28 E-value=6.3e-06 Score=53.25 Aligned_cols=73 Identities=16% Similarity=0.309 Sum_probs=51.4
Q ss_pred eecCCCeEEEEEEEcCCC--CCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422 200 TIDDGQCLDLSAVVKGDP--EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p--~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 277 (356)
.+..|++++|+|.....+ .+.|+|...+..... ....+..+|.+..++..|+|..+|.+.-..-..++.+.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 578899999999995544 458999874433221 111234589999999999999999997554444454444
Q ss_pred e
Q psy12422 278 T 278 (356)
Q Consensus 278 ~ 278 (356)
.
T Consensus 84 ~ 84 (88)
T cd07694 84 K 84 (88)
T ss_pred E
Confidence 3
No 312
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.28 E-value=4.5e-06 Score=58.19 Aligned_cols=67 Identities=22% Similarity=0.469 Sum_probs=45.7
Q ss_pred eecCCCeEEEEEEEcCCC-CCeEEEEEC--C---EEc------cC-----------CCceeEE--EeCCEEEEEEccCCC
Q psy12422 200 TIDDGQCLDLSAVVKGDP-EPRVSWTKN--G---QPL------NS-----------SNILDLK--YKNGVASLQIQEVFP 254 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p-~p~i~W~~~--g---~~~------~~-----------~~~~~~~--~~~~~~~L~i~~v~~ 254 (356)
.+.+|++++|.|.+.+.. ...+.|++- | ..+ .. ..+.... .......|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999997644 457999982 2 100 00 1122221 123356799999999
Q ss_pred CCCeEEEEEEEc
Q psy12422 255 EDEGVYVCTATN 266 (356)
Q Consensus 255 ~d~G~Y~C~a~n 266 (356)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998764
No 313
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.26 E-value=5.7e-06 Score=57.25 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=46.0
Q ss_pred eecCCCeEEEEEEEcCCCCCeEEEEEC--C--EEc------cC------------CCceeEEEeCCEEEEEEccCCCCCC
Q psy12422 200 TIDDGQCLDLSAVVKGDPEPRVSWTKN--G--QPL------NS------------SNILDLKYKNGVASLQIQEVFPEDE 257 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~--g--~~~------~~------------~~~~~~~~~~~~~~L~i~~v~~~d~ 257 (356)
.+.+|++++|.|.....-...+.|++. | ..+ .. ..++..........|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 467899999999986554556999982 2 111 00 0112222334557899999999999
Q ss_pred eEEEEEEEc
Q psy12422 258 GVYVCTATN 266 (356)
Q Consensus 258 G~Y~C~a~n 266 (356)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 314
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.23 E-value=1.5e-05 Score=56.65 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCceEEEEEeccCC------CCeeEEeeCC--E---E-cc--c----------CCeeE--EecCCeEEEEEeeCCCCCCe
Q psy12422 1 MQNVIKVKVGSTKP------PPTVKWYKGN--R---E-LS--K----------RDYSM--SYSDGVVSMEIIDCKPEDSG 54 (356)
Q Consensus 1 g~~v~l~C~~~g~p------~~~v~W~k~g--~---~-l~--~----------~~~~~--~~~~~~~~L~i~~~~~~D~G 54 (356)
|++|+|.|.....+ ...+.|||.. . . +. . .++.. ....+.++|+|.+++.+|+|
T Consensus 14 G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg 93 (119)
T cd05712 14 GLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSG 93 (119)
T ss_pred cccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCe
Confidence 78999999874221 2458999942 1 1 10 0 12222 12455679999999999999
Q ss_pred EEEEEEEeC
Q psy12422 55 EYKCVATNK 63 (356)
Q Consensus 55 ~Y~C~a~n~ 63 (356)
.|.|.+...
T Consensus 94 ~Y~C~~~~~ 102 (119)
T cd05712 94 KYFFRVELG 102 (119)
T ss_pred EEEEEEEcC
Confidence 999998764
No 315
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.23 E-value=1.5e-05 Score=56.35 Aligned_cols=72 Identities=21% Similarity=0.402 Sum_probs=51.2
Q ss_pred CCceeecCCCeEEEEEEEc-CCCCCeEEEEECCE-----Ecc---C-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422 196 LTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQ-----PLN---S-----------SNILDLKYK--NGVASLQIQEVF 253 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~-----~~~---~-----------~~~~~~~~~--~~~~~L~i~~v~ 253 (356)
+..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+... ....+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4567899999999999998 44566799998221 111 0 111222222 335789999999
Q ss_pred CCCCeEEEEEEEcC
Q psy12422 254 PEDEGVYVCTATNS 267 (356)
Q Consensus 254 ~~d~G~Y~C~a~n~ 267 (356)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999887
No 316
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.22 E-value=2.9e-05 Score=54.02 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=44.6
Q ss_pred eecCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEEEeCC-----EEEEEEccCCCCCC-eEEEEEEEcCCCc
Q psy12422 200 TIDDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDE-GVYVCTATNSLGT 270 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~-G~Y~C~a~n~~g~ 270 (356)
....|+.++|.|.+.| +|. ..++|++||..+...........++ .+.|.+.. ...|. ..|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCC
Confidence 4557888999999977 554 4799999999986432211111111 23455554 33444 4699999987643
No 317
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.18 E-value=7e-06 Score=54.00 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=39.1
Q ss_pred ceEEEEEeccCCCC--eeEEeeCCE--E---cc--------------cCCeeEEec--CCeEEEEEeeCCCCCCeEEEEE
Q psy12422 3 NVIKVKVGSTKPPP--TVKWYKGNR--E---LS--------------KRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 3 ~v~l~C~~~g~p~~--~v~W~k~g~--~---l~--------------~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
+|+|.|.......+ .+.||+... . +. ..++..... .+.++|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 58999998654443 799999431 1 10 012222222 5667999999999999999996
Q ss_pred E
Q psy12422 60 A 60 (356)
Q Consensus 60 a 60 (356)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 318
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.18 E-value=2.5e-05 Score=53.31 Aligned_cols=75 Identities=25% Similarity=0.289 Sum_probs=47.0
Q ss_pred CCeEEEEEEEcCCCC-CeEEEEECCE----Ecc-----CC--------CceeE-EEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422 204 GQCLDLSAVVKGDPE-PRVSWTKNGQ----PLN-----SS--------NILDL-KYKNGVASLQIQEVFPEDEGVYVCTA 264 (356)
Q Consensus 204 g~~~~l~C~~~g~p~-p~i~W~~~g~----~~~-----~~--------~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (356)
|++++|.|....... -.+.|+|... .+. .. .+..+ ....+..+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998754433 3599998421 100 00 01111 11123478999999999999999987
Q ss_pred E-cCCCceEEEEEEe
Q psy12422 265 T-NSLGTAETKCKLT 278 (356)
Q Consensus 265 ~-n~~g~~~~~~~l~ 278 (356)
. .+.|.....+.|.
T Consensus 81 ~~~p~g~~~~~~~L~ 95 (97)
T cd05846 81 NTFPDGSKSGTMCLT 95 (97)
T ss_pred EeCCCCCeeeEEEEE
Confidence 6 4556655555543
No 319
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.17 E-value=1.8e-05 Score=51.00 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=41.4
Q ss_pred EEEEEEEcCC-CC-CeEEEEECCEEccCCCcee-EEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 207 LDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD-LKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 207 ~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~-~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
++|.|.+.|+ |+ ..+.|+|||..+..+.... ... .++ .+.|.|.....++...|+|++.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899999875 55 4799999998754332111 111 111 24566666666778899999987653
No 320
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.16 E-value=3.7e-05 Score=51.81 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=49.2
Q ss_pred CeEEEEEEEcCCC-CCeEEEEECC----EEccC-------------CCceeEE-EeCCEEEEEEccCCCCCCeEEEEEE-
Q psy12422 205 QCLDLSAVVKGDP-EPRVSWTKNG----QPLNS-------------SNILDLK-YKNGVASLQIQEVFPEDEGVYVCTA- 264 (356)
Q Consensus 205 ~~~~l~C~~~g~p-~p~i~W~~~g----~~~~~-------------~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a- 264 (356)
++++|.|.....+ ...|+|.|.. ..+.. ..+..+. ...+..+|.|.+++.+|.|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3689999986433 3459998832 11110 0122221 1233568999999999999999996
Q ss_pred EcCCCceEEEEEEe
Q psy12422 265 TNSLGTAETKCKLT 278 (356)
Q Consensus 265 ~n~~g~~~~~~~l~ 278 (356)
..+.|..+++..|.
T Consensus 81 tfP~G~~~~~~~l~ 94 (96)
T cd05887 81 TFPLGNTQSSTTVT 94 (96)
T ss_pred eCCCCCeeEEEEEE
Confidence 56788888887775
No 321
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.16 E-value=3.1e-05 Score=53.88 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=41.4
Q ss_pred CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCeeEE-ecCC-eE----EEEEeeCCCCCCe-EEEEEEEeCC
Q psy12422 1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDYSMS-YSDG-VV----SMEIIDCKPEDSG-EYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~~~~-~~~~-~~----~L~i~~~~~~D~G-~Y~C~a~n~~ 64 (356)
|+.++|.|.+.| +|. ..++|+|||+.+........ ..++ .+ .|.+. +...|.| .|+|.+.+..
T Consensus 21 g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 21 GQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 567899999966 564 58999999999864322222 2232 33 34444 3455555 5999998864
No 322
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.14 E-value=3e-05 Score=52.31 Aligned_cols=72 Identities=24% Similarity=0.219 Sum_probs=44.2
Q ss_pred cCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCcee-EEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 202 DDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILD-LKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 202 ~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~-~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
.+|+..+|.|.+.| +|.. .++|++||..+....... .... +.......-.+...+...|+|++.+.......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~~~ 88 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQEPL 88 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCCce
Confidence 46888999999988 4544 589999999876541111 1111 11112222233445667999999987655433
No 323
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.13 E-value=2.1e-05 Score=53.16 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=41.3
Q ss_pred CCceEEEEEeccC-CCC-eeEEeeCCEEcccCC---eeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~---~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+.++|.|.+.|. |+. .++|+|+|+.+.... ......++.+.+ ....+...|.+.|+|++.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 4689999999885 554 889999997443221 112234444322 223344568899999998764
No 324
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.13 E-value=1.2e-05 Score=53.96 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=43.4
Q ss_pred ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422 3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72 (356)
Q Consensus 3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 72 (356)
-+.++|.+ .|+|.+.|+||++....... ......++. +.|.+..-..+|...|+|++.|........+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 46789988 68999999999982211111 111222332 36777665666677999999997644433333
No 325
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.12 E-value=3.6e-05 Score=51.91 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=41.5
Q ss_pred CCceEEEEEecc-CCCC-eeEEeeCCEEcccC---CeeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKR---DYSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~---~~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+.++|.|.+.| +|.. .++|+|||+++... .......++.+.+ ....+...+...|+|.+.+..
T Consensus 14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 567899999977 4654 78999999998653 1112233443321 112334456779999998764
No 326
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.11 E-value=2.7e-05 Score=55.38 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=47.5
Q ss_pred CCceeecCCCeEEEEEEEcCCC------CCeEEEEECCE-----E-cc--C-C--------CceeE--EEeCCEEEEEEc
Q psy12422 196 LTDKTIDDGQCLDLSAVVKGDP------EPRVSWTKNGQ-----P-LN--S-S--------NILDL--KYKNGVASLQIQ 250 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g~p------~p~i~W~~~g~-----~-~~--~-~--------~~~~~--~~~~~~~~L~i~ 250 (356)
|..+.+.+|+.++|.|.....+ ...+.|++... . +. . . .++.. ....+...|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3456789999999999875221 24589998321 1 10 0 0 12222 113445789999
Q ss_pred cCCCCCCeEEEEEEEcC
Q psy12422 251 EVFPEDEGVYVCTATNS 267 (356)
Q Consensus 251 ~v~~~d~G~Y~C~a~n~ 267 (356)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988764
No 327
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.09 E-value=1.7e-05 Score=53.38 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=44.0
Q ss_pred CCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 203 DGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 203 ~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
.++.++|.|.+.| +|. ..|+|++||..+....... ....++ .+.|.+..-...+...|+|++.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 4566899999988 554 4599999999874332111 111111 23455554444467799999998765543
No 328
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.08 E-value=3.1e-05 Score=51.88 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=42.1
Q ss_pred cCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEE---eCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 202 DDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 202 ~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
..|...+|.|.+.|+ |+ ..++|++||..+. ........ ++.......-.+...+...|+|++.....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 446667999999884 53 3489999999987 33221111 12112222233456677899999988654
No 329
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.08 E-value=3e-05 Score=52.19 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=41.5
Q ss_pred CceEEEEEecc-CCC-CeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422 2 QNVIKVKVGST-KPP-PTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHGT 66 (356)
Q Consensus 2 ~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g~ 66 (356)
+.+.|.|.+.| +|. ..|+|+|||+.+.... ......++.+ .|.|....-.+...|+|.+.+....
T Consensus 15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 46899999987 455 5789999999874321 1122334433 3444433333567999999886543
No 330
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.08 E-value=1.7e-05 Score=56.13 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCceEEEEEeccCC--CCeeEEeeC--C-EE--c---c------------cCCeeEEec--CCeEEEEEeeCCCCCCeEE
Q psy12422 1 MQNVIKVKVGSTKP--PPTVKWYKG--N-RE--L---S------------KRDYSMSYS--DGVVSMEIIDCKPEDSGEY 56 (356)
Q Consensus 1 g~~v~l~C~~~g~p--~~~v~W~k~--g-~~--l---~------------~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y 56 (356)
|++|+|.|...+.- ...+.|||. | .+ | . .+++..... ...+.|+|.+++.+|+|.|
T Consensus 12 G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~Y 91 (117)
T cd04981 12 GQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVY 91 (117)
T ss_pred CCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEE
Confidence 79999999875432 356999993 2 21 1 0 112323222 2346899999999999999
Q ss_pred EEEEEe
Q psy12422 57 KCVATN 62 (356)
Q Consensus 57 ~C~a~n 62 (356)
.|.+..
T Consensus 92 yCa~~~ 97 (117)
T cd04981 92 YCARGL 97 (117)
T ss_pred EEEEEc
Confidence 998864
No 331
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=1.3e-05 Score=54.84 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=45.4
Q ss_pred eecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 200 TIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
....++.++|.|.+.| +| ...|+|++||..+....... ....++ .+.|.+..-..++...|+|++.+..-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 4456788999999977 55 34699999999986431111 111122 23455655555567899999988764
No 332
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.05 E-value=2.7e-05 Score=52.51 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=41.9
Q ss_pred CceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 2 QNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 2 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
+...+.|.+ .|+|.+.|+|+++...... .......++ .+.|.+......|...|+|++.|.....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 456789999 7999999999997211110 111122333 2367776656666779999999875443
No 333
>PHA03376 BARF1; Provisional
Probab=98.04 E-value=5.6e-05 Score=56.04 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=53.7
Q ss_pred ceeecCCCeEEEEEEEcCC---CCCeEEEEECCE----Ec-c------------CCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422 198 DKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQ----PL-N------------SSNILDLKYKNGVASLQIQEVFPEDE 257 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~---p~p~i~W~~~g~----~~-~------------~~~~~~~~~~~~~~~L~i~~v~~~d~ 257 (356)
.+.+..|+.+.|+|..... +...|.|+|.+. .+ . ....+.+..+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3467789999999988522 345699999432 11 0 01122232335778999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEE
Q psy12422 258 GVYVCTATNSLGTAETKCKL 277 (356)
Q Consensus 258 G~Y~C~a~n~~g~~~~~~~l 277 (356)
|.|.|............-++
T Consensus 100 GtY~C~fQkge~~~~k~ehL 119 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHL 119 (221)
T ss_pred ceEEEEEEcCCCceeeeeee
Confidence 99999998766555443333
No 334
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.03 E-value=8.7e-05 Score=50.05 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=47.0
Q ss_pred CeEEEEEEEcC-CCCCeEEEEECCE----EccC-----C--------CceeEEE-eCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422 205 QCLDLSAVVKG-DPEPRVSWTKNGQ----PLNS-----S--------NILDLKY-KNGVASLQIQEVFPEDEGVYVCTAT 265 (356)
Q Consensus 205 ~~~~l~C~~~g-~p~p~i~W~~~g~----~~~~-----~--------~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~ 265 (356)
+.++|.|.... .....++|.|... .+.. + +++.+.. .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 35789999853 2345688998321 1110 0 1222211 1234689999999999999999986
Q ss_pred c-CCCceEEEEEEe
Q psy12422 266 N-SLGTAETKCKLT 278 (356)
Q Consensus 266 n-~~g~~~~~~~l~ 278 (356)
. +.|..++.+.+.
T Consensus 81 t~P~g~~~~~i~~~ 94 (96)
T cd05889 81 TYPQGSWEKVIEVV 94 (96)
T ss_pred eCCCCCeEEEEEEE
Confidence 5 477777776653
No 335
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.03 E-value=1.7e-05 Score=54.36 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=44.0
Q ss_pred eecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCcee--EEEe---CC----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 200 TIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILD--LKYK---NG----VASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~--~~~~---~~----~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
.+..|..++|.|.+.|+.++ .++|++||..+....... ...+ ++ .+.|.+..-...+...|+|++.+..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 34457789999999885443 489999999876432111 1111 12 2345554333345668999998875
Q ss_pred Cc
Q psy12422 269 GT 270 (356)
Q Consensus 269 g~ 270 (356)
..
T Consensus 92 l~ 93 (102)
T cd05768 92 LP 93 (102)
T ss_pred CC
Confidence 43
No 336
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.03 E-value=5.1e-05 Score=51.01 Aligned_cols=65 Identities=25% Similarity=0.370 Sum_probs=41.0
Q ss_pred cCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEEE---eCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 202 DDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLKY---KNG---VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 202 ~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~~---~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
..|+..+|.|.+.| +|. ..++|.+||..+..+....... ++. .+.|.+. ..+...|+|.+.....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence 34666899999988 453 3589999999876532211111 111 1345443 3466699999988754
No 337
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.02 E-value=5.1e-05 Score=53.71 Aligned_cols=70 Identities=26% Similarity=0.443 Sum_probs=46.8
Q ss_pred CceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc------C-----------CCceeEEEeC--CEEEEEEccCC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN------S-----------SNILDLKYKN--GVASLQIQEVF 253 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~------~-----------~~~~~~~~~~--~~~~L~i~~v~ 253 (356)
....+.+|++++|.|...+.- ...+.|+| .|.... . .+++...... ....|+|.+++
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 445789999999999986433 45599998 221110 0 1222222222 33579999999
Q ss_pred CCCCeEEEEEEEc
Q psy12422 254 PEDEGVYVCTATN 266 (356)
Q Consensus 254 ~~d~G~Y~C~a~n 266 (356)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998765
No 338
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.02 E-value=7.8e-05 Score=50.27 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=43.2
Q ss_pred CeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeE-EEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 205 QCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDL-KYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 205 ~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
....+.|.+ .|+|.+.|+|+++ +........ ....+ .+.|.+.....+|...|+|++.|..-....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 357789999 7899999999997 111111111 11111 256777666666777999999998754433
No 339
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.97 E-value=1.8e-05 Score=47.94 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 63 (356)
|.+|+|+|...+. .+.|++|+..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 7 GTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 7 GTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred ccEEEEECCCCCC---CceEEeCCccCCCCCc---------eEEeeccC-CCCceEEEEeCCC
Confidence 6789999976532 3999999966653211 33344444 8899999999543
No 340
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.94 E-value=7.6e-05 Score=49.99 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCceEEEEEecc-CCC-CeeEEeeCCEEcccCC--eeEEecCCeEEEE-EeeCCCCCCeEEEEEEEeC
Q psy12422 1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRD--YSMSYSDGVVSME-IIDCKPEDSGEYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~-i~~~~~~D~G~Y~C~a~n~ 63 (356)
|+..+|.|.+.| +|. ..++|+|||+++.... -.....++.+.+. ...+...+...|+|.+...
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 345689999988 454 4689999999986211 1122445554332 2244567888999999875
No 341
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.93 E-value=5.4e-05 Score=51.80 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCceEEEEEecc-CC-CCeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGST-KP-PPTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
++.++|.|.+.| +| ...|+|+|||+++.... ......++.+ .|.+......+...|+|.+.+..
T Consensus 17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 456899999977 45 45789999999985321 1122335544 34444433345689999998764
No 342
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.92 E-value=4.9e-05 Score=53.08 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=50.3
Q ss_pred ceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCce--eEEEeC-C----EEEEEEccCCCCC-CeEEEEEEEcC
Q psy12422 198 DKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNIL--DLKYKN-G----VASLQIQEVFPED-EGVYVCTATNS 267 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~--~~~~~~-~----~~~L~i~~v~~~d-~G~Y~C~a~n~ 267 (356)
...+.+++.++|.|.+.|+ |. ..|+|++||..+...... .....+ + .+.|.|......+ ...|+|.+.+.
T Consensus 12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence 3345567789999999874 54 369999999887653221 111111 1 2456665544434 56999999988
Q ss_pred CCceEEEEEE
Q psy12422 268 LGTAETKCKL 277 (356)
Q Consensus 268 ~g~~~~~~~l 277 (356)
.........-
T Consensus 92 g~~~~~~~~~ 101 (115)
T cd05769 92 GGTDTDKWQS 101 (115)
T ss_pred CCccceeeee
Confidence 7766554443
No 343
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.91 E-value=5.1e-05 Score=51.31 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=42.7
Q ss_pred ceeecCCCeEEEEEEEcCC--CC-CeEEEEECCEEccC-CCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 198 DKTIDDGQCLDLSAVVKGD--PE-PRVSWTKNGQPLNS-SNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~--p~-p~i~W~~~g~~~~~-~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
...+..|+.++|.|.+.|+ |+ ..++|+|||..... .........++ .+.|.+..-..++.-.|+|.+.+..-
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 3456678999999999888 43 34899998743321 10000111111 13444544333445689999998764
Q ss_pred c
Q psy12422 270 T 270 (356)
Q Consensus 270 ~ 270 (356)
.
T Consensus 88 ~ 88 (96)
T cd07696 88 P 88 (96)
T ss_pred C
Confidence 4
No 344
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.88 E-value=7.6e-05 Score=48.96 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCCCC--eEEEEECCE--E---cc-------------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEE
Q psy12422 206 CLDLSAVVKGDPEP--RVSWTKNGQ--P---LN-------------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCT 263 (356)
Q Consensus 206 ~~~l~C~~~g~p~p--~i~W~~~g~--~---~~-------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 263 (356)
++.|.|.+.....+ .+.|++... . +. ...++..... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46899998655543 689988331 0 00 0122333322 4567899999999999999996
No 345
>KOG1480|consensus
Probab=97.88 E-value=3.2e-06 Score=75.40 Aligned_cols=171 Identities=18% Similarity=0.267 Sum_probs=101.2
Q ss_pred ccccccCccceeeecccCCceee------ecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeeeeec
Q psy12422 89 HNFLYSGDRKYIEKHIRPAPAII------TTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNS 162 (356)
Q Consensus 89 ~~~~~~g~~~~l~c~~~p~p~i~------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
...+..+.++.+.|...|.+.|. |..+.............+.. .....-+.+............+.++|+.
T Consensus 33 ~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~---~~~~si~Isr~~v~~~~~~~d~~cQc~a 109 (909)
T KOG1480|consen 33 SAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG---VREVSIDISRQQVETSGGPEDYWCQCVA 109 (909)
T ss_pred ccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee---EEeeeeeeehhhhhcccCccceeeeeee
Confidence 44577899999999999777754 44433322221111111111 1111122222222233444445555554
Q ss_pred cccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEe
Q psy12422 163 ILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYK 241 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~ 241 (356)
....+ ...+......+.+ ..-.+...+.-+.|.++..+.|.|.. .+.|...+.|++++..+....+.....+
T Consensus 110 ~~~~g-~~~s~~a~vr~ay------~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d 182 (909)
T KOG1480|consen 110 WSDDG-TVKSRKATVRIAY------LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD 182 (909)
T ss_pred ecCCC-cchhhhHHHHHHH------HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence 44433 1122222222211 22233444555678889999999987 7889999999999998887554444333
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 242 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
. .|++..++..|.|+|+|+|.|..+..+
T Consensus 183 ~---~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 183 H---NLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred C---Cccccchhhhhcccceeeeehhhcccc
Confidence 3 589999999999999999999988544
No 346
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.87 E-value=0.0002 Score=48.20 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=42.2
Q ss_pred eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEE--eCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKY--KNG---VASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
-+.+.|.+ .|.|.+.|+|+++. .......... ++. .+.|.+..-..+|...|+|+|.|..-....
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~ 87 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ 87 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 47899987 68999999999972 1111111111 111 246777666666777999999998754433
No 347
>PHA02633 hypothetical protein; Provisional
Probab=97.86 E-value=6.8e-05 Score=44.45 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 78 (356)
Q Consensus 42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~ 78 (356)
.|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 7999999999999999999999888888888888754
No 348
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.85 E-value=4.1e-05 Score=46.38 Aligned_cols=51 Identities=29% Similarity=0.547 Sum_probs=36.5
Q ss_pred CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267 (356)
Q Consensus 203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 267 (356)
.|.+|+|+|...+.. +.|.+|+..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 589999999875222 999999966554221 34455555 8899999999644
No 349
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.81 E-value=7.2e-05 Score=51.31 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCceEEEEEeccC-CCC-eeEEeeCCEEcccCCe-e--EEe---cCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSKRDY-S--MSY---SDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~~-~--~~~---~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+.++|.|.+.|. |.. .++|+|||+++..... . ... .++.+ .|.|..-...+...|+|.+.+..
T Consensus 16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4679999999885 443 5799999998864321 1 111 13443 34443222234568999998764
No 350
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.81 E-value=0.00013 Score=48.07 Aligned_cols=66 Identities=24% Similarity=0.411 Sum_probs=44.8
Q ss_pred cCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE--eCCE----EEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422 202 DDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY--KNGV----ASLQIQEVFPEDEGVYVCTATNSLGT 270 (356)
Q Consensus 202 ~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~--~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~ 270 (356)
..+..++|.|.+.+ +|.. .|.|+++|..+.......... .++. +.|.+. ..+...|+|++.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 34889999999977 5544 599999999887544332222 2222 345555 56667999999987654
No 351
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.81 E-value=0.00017 Score=48.50 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+..+|.|.+.| +|. ..++|+|||+++..+.. .....++.+ .|.+. ..+...|+|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 345799999988 454 47899999999865321 122344544 34443 456679999998753
No 352
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.80 E-value=0.00015 Score=48.86 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=39.0
Q ss_pred ecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE-eCCE----EEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 201 IDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY-KNGV----ASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 201 v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~-~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
+..+..++|.|.|.| +|.. .++|.+||..+..+....... +++. +.|.+..-. ....|+|.+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 444677899999988 4533 489999999875432111111 1111 234443321 2345999998844
No 353
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.75 E-value=0.00021 Score=47.07 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=42.7
Q ss_pred CCceEEEEEecc-CCCC-eeEEeeCCEEcccCCee--EE-ecCCeEEEE-EeeCCCCCCeEEEEEEEeCCc
Q psy12422 1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKRDYS--MS-YSDGVVSME-IIDCKPEDSGEYKCVATNKHG 65 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~~~--~~-~~~~~~~L~-i~~~~~~D~G~Y~C~a~n~~g 65 (356)
++.+.|.|.+.| +|.. .|+|++||+.+...... .. ..++.+++. ...+...+...|+|.+.+...
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence 578999999977 4544 69999999998754211 12 356654322 122235666789999987643
No 354
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.72 E-value=0.00022 Score=48.21 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=37.7
Q ss_pred CCceEEEEEeccC--CC-CeeEEeeCCEEccc-C-CeeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 1 MQNVIKVKVGSTK--PP-PTVKWYKGNRELSK-R-DYSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 1 g~~v~l~C~~~g~--p~-~~v~W~k~g~~l~~-~-~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
|+.++|.|.+.|. |+ ..++|+|||+.... . .......++.+ .|.+..-.-.+.-.|+|.+.+..
T Consensus 14 ~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 14 TKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred CCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 5789999999887 54 36899998753321 1 11122344433 33333222223458999998764
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.71 E-value=0.0002 Score=48.04 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=41.7
Q ss_pred CCceEE-EEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422 1 MQNVIK-VKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHG 65 (356)
Q Consensus 1 g~~v~l-~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g 65 (356)
|+.+.+ .|.+ .|+|++.|+|+.+....... ......++. +.|.+...+..|.-.++|++.+..-
T Consensus 16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 16 GNGTTLAACCAAEGRPAADVTWETNVYGTSES-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CcceeEEEEEccCCccCCEeEEeCCCCCccce-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 456677 8887 88999999999874332211 111222332 2566666666777799999988743
No 356
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.67 E-value=0.00036 Score=47.05 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=36.3
Q ss_pred CceEEEEEecc-CCCC-eeEEeeCCEEcccCC--eeEEecCCeE----EEEEeeCCCC-CCeEEEEEEEeC
Q psy12422 2 QNVIKVKVGST-KPPP-TVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPE-DSGEYKCVATNK 63 (356)
Q Consensus 2 ~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~--~~~~~~~~~~----~L~i~~~~~~-D~G~Y~C~a~n~ 63 (356)
..++|.|.+.| +|.. .++|+|||+.+..+. ......++.+ .|+|. .. ....|+|.+...
T Consensus 17 ~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H~ 84 (96)
T cd07697 17 GQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKHE 84 (96)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEEC
Confidence 46899999987 4543 689999999875431 1112222233 33333 33 234599999874
No 357
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.65 E-value=0.0003 Score=42.96 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=37.6
Q ss_pred CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266 (356)
Q Consensus 204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 266 (356)
.++|.|+|.+. ..|.|++ |..+.... ..+|.+.+...+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 45799999762 5599999 65554322 23788999999999999999988
No 358
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.63 E-value=0.00017 Score=44.07 Aligned_cols=48 Identities=17% Similarity=0.366 Sum_probs=33.8
Q ss_pred CceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62 (356)
Q Consensus 2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 62 (356)
+.|.|+|.+. ..|+|+| |..+.... ..+|.+-....+-.|.|.|.+.+
T Consensus 7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNGA----TNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ceEEEEecCC----CcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence 4689999762 4599999 66553211 22666666666778999999876
No 359
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.62 E-value=4.8e-05 Score=53.55 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCceEEEEEeccC-----CCCeeEEeeCCEEccc---CCee-----------EEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTK-----PPPTVKWYKGNRELSK---RDYS-----------MSYSDGVVSMEIIDCKPEDSGEYKCVAT 61 (356)
Q Consensus 1 g~~v~l~C~~~g~-----p~~~v~W~k~g~~l~~---~~~~-----------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 61 (356)
+++|.|.|.+... +.-.|.|..+|+.+-. .... .....|..+|.+...+.- .|+|+|.+.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence 5889999999652 2235899999987631 1111 112345667888875544 899999999
Q ss_pred eCCceeEEEEEEEEe
Q psy12422 62 NKHGTDETNCVVIVE 76 (356)
Q Consensus 62 n~~g~~~~~~~l~v~ 76 (356)
......+..+.|...
T Consensus 106 ~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 106 ELSREGETTIELKYR 120 (130)
T ss_dssp ETTEEEEEEEEEEE-
T ss_pred ecCCCceEEEEEEEE
Confidence 887777777777663
No 360
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.62 E-value=0.00046 Score=46.60 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCce--eEEE-eCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNIL--DLKY-KNG---VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~--~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
.++.++|.|.+.|+ |. ..|+|++||.. ..+... .... ++. .+.|.+..-.-.....|+|++.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~ 88 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST 88 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence 45678999999885 43 35899999997 332111 0111 121 13444443332235689999998763
No 361
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.59 E-value=0.0049 Score=52.67 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=55.0
Q ss_pred EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Cceeeeccc
Q psy12422 41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAIITTRQ 115 (356)
Q Consensus 41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i~w~~~ 115 (356)
+.|+|..+...++|.|+=...+..+.......+.|.-.. ++...+....+-+|+...-.|.+. | ...+.|+.+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr--~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYN--APLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEec--CCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 569999999999999997766655544444555553221 112445556677899999999987 3 223899999
Q ss_pred ccccC
Q psy12422 116 EIKSS 120 (356)
Q Consensus 116 ~~~~~ 120 (356)
+..+.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 88765
No 362
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.59 E-value=0.00048 Score=45.92 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred ecCCCeEEEEEEEc-CCCC--CeEEEEECCEEccCCCceeE----EEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 201 IDDGQCLDLSAVVK-GDPE--PRVSWTKNGQPLNSSNILDL----KYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 201 v~~g~~~~l~C~~~-g~p~--p~i~W~~~g~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
+.+|..+++.|.+. ++|. ..+.|++....+....-... ........+++...+.+|...|+|+|.=..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 57899999999994 5675 56999987766654331110 0011123556655444444499999975444
No 363
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.58 E-value=0.00035 Score=46.53 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=40.5
Q ss_pred CCceEEEEEe-ccCCC--CeeEEeeCCEEcccCCeeEE-----ecCCeEEEEEeeCCCCCCe-EEEEEEEeC
Q psy12422 1 MQNVIKVKVG-STKPP--PTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDSG-EYKCVATNK 63 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~--~~v~W~k~g~~l~~~~~~~~-----~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~ 63 (356)
|..+++.|.+ .+.|. ..|.|||....+....+... .......+++.. +++|.| .|.|+|.-.
T Consensus 15 G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 15 GKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred CceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 7899999999 45666 57999997776654332111 011223566665 477776 999999644
No 364
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.58 E-value=0.00077 Score=45.24 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=47.0
Q ss_pred ceeecCCCeEEE-EEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 198 DKTIDDGQCLDL-SAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 198 ~~~v~~g~~~~l-~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
...+.+|..+.+ .|.+ .|.|.+.|+|+.+....... ......++ .+.|.+..-+.+|...++|++.+..-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 346778999998 9987 88999999999863222110 00111111 24677766777788899999998854
No 365
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.53 E-value=0.0011 Score=45.64 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=45.5
Q ss_pred CceeecCCCeEEEEEEEcCCCC---CeEEEEE--CCEEcc--------------CCCcee--EEEeCCEEEEEEccCCCC
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPE---PRVSWTK--NGQPLN--------------SSNILD--LKYKNGVASLQIQEVFPE 255 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~--~g~~~~--------------~~~~~~--~~~~~~~~~L~i~~v~~~ 255 (356)
....+..|..++|.|.+.|+-. -.+.|.| +| .+. ...+.. .....+...|.|.+++.+
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3456788999999999977553 3488987 33 210 111111 222344578999999999
Q ss_pred CCeEEEEEE
Q psy12422 256 DEGVYVCTA 264 (356)
Q Consensus 256 d~G~Y~C~a 264 (356)
|.+.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999955
No 366
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.51 E-value=0.00092 Score=46.75 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=41.7
Q ss_pred CceEEEEEecc-CCC-CeeEEeeCCEEcccCCe---eEEe-cCCeE----EEEEeeCCCCC-CeEEEEEEEeCCceeE
Q psy12422 2 QNVIKVKVGST-KPP-PTVKWYKGNRELSKRDY---SMSY-SDGVV----SMEIIDCKPED-SGEYKCVATNKHGTDE 68 (356)
Q Consensus 2 ~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~---~~~~-~~~~~----~L~i~~~~~~D-~G~Y~C~a~n~~g~~~ 68 (356)
+.++|.|.+.| +|. ..|+|+|||+.+..... .... .++.+ .|.|......| ...|+|.+.+......
T Consensus 19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 19 RKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred CCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 46899999977 465 37899999998864321 1112 22333 45554333223 5689999987744443
No 367
>PHA02633 hypothetical protein; Provisional
Probab=97.44 E-value=0.00058 Score=40.60 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 334 (356)
+...|.|-.+..+|+|.|.|..+|.-=-.+.++.|+|...+.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence 445788999999999999999998766677788888877664
No 368
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.0008 Score=45.44 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=41.9
Q ss_pred CCceeecCCCeEEEEEEEcC-C-CC-CeEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 196 LTDKTIDDGQCLDLSAVVKG-D-PE-PRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 196 ~~~~~v~~g~~~~l~C~~~g-~-p~-p~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
|....+..+..++|.|.+.+ + |. ..|+|.++|..-..........++. .+.|.+..-.......|+|++.+...
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 33344557889999999987 4 43 3599999987511000000111111 13454443322344579999988765
No 369
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.36 E-value=0.0012 Score=45.47 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=40.8
Q ss_pred CCceEEEEEeccCC--C-CeeEEeeC--CEEcc---------------cCCe--eEEecCCeEEEEEeeCCCCCCeEEEE
Q psy12422 1 MQNVIKVKVGSTKP--P-PTVKWYKG--NRELS---------------KRDY--SMSYSDGVVSMEIIDCKPEDSGEYKC 58 (356)
Q Consensus 1 g~~v~l~C~~~g~p--~-~~v~W~k~--g~~l~---------------~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C 58 (356)
|+.++|.|++.|.- . ..+.|+|. | .+. .+++ .....+....|+|.+++.+|++.|.|
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~C 91 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFC 91 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEE
Confidence 57899999996543 3 45799993 3 211 1111 12344566799999999999999999
Q ss_pred EE
Q psy12422 59 VA 60 (356)
Q Consensus 59 ~a 60 (356)
..
T Consensus 92 a~ 93 (115)
T cd05721 92 KI 93 (115)
T ss_pred Ee
Confidence 65
No 370
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.35 E-value=0.0016 Score=43.96 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred CceEEEEEeccC-CC-CeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
+.++|.|.+.|. |. ..|+|+|||+. .... ......++.+ .|+|..-.-.....|+|++.+..
T Consensus 17 ~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 17 DSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 568999999874 54 36899999998 3221 1122224544 34443322122567999998764
No 371
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.34 E-value=0.023 Score=48.94 Aligned_cols=206 Identities=16% Similarity=0.137 Sum_probs=104.4
Q ss_pred CeEEEEEeeCCCCCCeEEEEEEEeCC-ce--eEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Ccee
Q psy12422 39 GVVSMEIIDCKPEDSGEYKCVATNKH-GT--DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAI 110 (356)
Q Consensus 39 ~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i 110 (356)
+.+.|+|.++...++|.|+=++.+.. +. .+..+.+.+...+ ...+...-+-+|+...-.|.+. | ...+
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P----sVsV~p~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP----NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC----CccccCCccccCCCceEEEEeeeecCCCceEE
Confidence 34579999999999999987765432 22 2333444443332 3445556677899999999987 3 2238
Q ss_pred eecccccccCCccccCCCCceEEEEeeccccccccccccC-----CCccceeeeeeccccCCCCCccc-ccceeeecCCC
Q psy12422 111 ITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT-----SPSKKITRRMNSILDTDSPSRSR-STTKELIMPPD 184 (356)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 184 (356)
.|+.++..+....... .......|.++.+..... .....-...|...-..+.....+ +....-.+
T Consensus 363 rWf~ng~~V~~~~it~------t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V--- 433 (566)
T PHA03269 363 KWTSNFGNIGKNFITD------AIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV--- 433 (566)
T ss_pred EEEeCCcccCcccccc------ceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc---
Confidence 9999977765321111 001111222222222211 11112233443322222222221 22222222
Q ss_pred CCCCCCeecccCCceeecCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCceeEEE-eCCEEEEEEcc---CCCCC-C
Q psy12422 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKY-KNGVASLQIQE---VFPED-E 257 (356)
Q Consensus 185 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~---v~~~d-~ 257 (356)
+.+|.+.. .+..|. .-|.+.-.|. ..+.|+-++............. .+.-+...|++ ++.+| -
T Consensus 434 --Y~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgp 503 (566)
T PHA03269 434 --YPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGP 503 (566)
T ss_pred --ccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCc
Confidence 55565543 233333 3599988875 3699998765543332211110 01123455555 34444 2
Q ss_pred eEEEEEEEcC
Q psy12422 258 GVYVCTATNS 267 (356)
Q Consensus 258 G~Y~C~a~n~ 267 (356)
-.|+|++...
T Consensus 504 veYTCrL~GY 513 (566)
T PHA03269 504 ITYSCHLDGY 513 (566)
T ss_pred eeEEEEEeec
Confidence 4899988654
No 372
>PHA02982 hypothetical protein; Provisional
Probab=97.28 E-value=0.00096 Score=50.32 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCceEEEEEe-ccCCCCeeEEeeCC-EEcc-------------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422 1 MQNVIKVKVG-STKPPPTVKWYKGN-RELS-------------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 1 g~~v~l~C~~-~g~p~~~v~W~k~g-~~l~-------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 59 (356)
+++|.|.|.. ++.---...|+++. .-|. ...+........++|+|.+++.+..|-|+|.
T Consensus 39 d~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~ 118 (251)
T PHA02982 39 DQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFTCE 118 (251)
T ss_pred CCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceEEE
Confidence 5889999996 33333468999843 3222 0123344566677999999999999999999
Q ss_pred EEeCCceeEE-EEEEEE
Q psy12422 60 ATNKHGTDET-NCVVIV 75 (356)
Q Consensus 60 a~n~~g~~~~-~~~l~v 75 (356)
+....+..+. ..-|.|
T Consensus 119 ~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 119 AKDAEGKEETCEKCLEI 135 (251)
T ss_pred EecCCCchheeheeeeE
Confidence 9886655443 333444
No 373
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.10 E-value=0.0081 Score=50.23 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=28.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 329 (356)
..++|+|+++.-+.+|.|+|.|....-..+....|.|
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence 4589999999999999999999865444444444444
No 374
>KOG1480|consensus
Probab=97.03 E-value=0.00026 Score=63.78 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=50.4
Q ss_pred CceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 2 QNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 2 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
..+.|.|.. .+.|...+.|||++..+...+..+...+. .|.|..++..|+|+|+|+|.|..+..
T Consensus 145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~--~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH--NLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ccccccccCcccchhhhhhccccCCCCCccccchhhhcC--Cccccchhhhhcccceeeeehhhccc
Confidence 456777776 78999999999999888765433344444 68999999999999999999876554
No 375
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.97 E-value=0.00052 Score=48.41 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=45.6
Q ss_pred eecCCCeEEEEEEEcCCC-----CCeEEEEECCEEccCCCce--eE-----------EEeCCEEEEEEccCCCCCCeEEE
Q psy12422 200 TIDDGQCLDLSAVVKGDP-----EPRVSWTKNGQPLNSSNIL--DL-----------KYKNGVASLQIQEVFPEDEGVYV 261 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p-----~p~i~W~~~g~~~~~~~~~--~~-----------~~~~~~~~L~i~~v~~~d~G~Y~ 261 (356)
...-++++.|.|.+...+ ...|.|..+|..+-.-+.. .. ....+..+|.+...+.- .|+|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 345588999999996522 2359999988876421110 00 00123345777774444 89999
Q ss_pred EEEEcCCCceEEEEEEe
Q psy12422 262 CTATNSLGTAETKCKLT 278 (356)
Q Consensus 262 C~a~n~~g~~~~~~~l~ 278 (356)
|++.......+..+.|.
T Consensus 102 CeVt~~~~ege~~i~Lk 118 (130)
T PF08204_consen 102 CEVTELSREGETTIELK 118 (130)
T ss_dssp EEEEETTEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEE
Confidence 99999888888777775
No 376
>KOG4597|consensus
Probab=96.97 E-value=0.0035 Score=53.50 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=65.7
Q ss_pred CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE---CCEEccCCCceeEE--EeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---NGQPLNSSNILDLK--YKNGVASLQIQEVFPEDEGVYVCTA 264 (356)
Q Consensus 190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~---~g~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (356)
+.+...+....+..|++..++|.+.|.|.+.|.|.+ |+..+......+.. .......|.|-+....|+|.|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 555555667788899999999999999999999976 33332211111111 1122357999999999999999999
Q ss_pred EcCCCceEEEEEEe
Q psy12422 265 TNSLGTAETKCKLT 278 (356)
Q Consensus 265 ~n~~g~~~~~~~l~ 278 (356)
.|..|...+.+.+.
T Consensus 277 rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCS 290 (560)
T ss_pred ccccceeeccceee
Confidence 99999888877766
No 377
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.94 E-value=0.12 Score=44.11 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=53.3
Q ss_pred EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Cceeeecccc
Q psy12422 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAIITTRQE 116 (356)
Q Consensus 42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i~w~~~~ 116 (356)
.|.|..+....+|.|+=...+..+.......+.|.-.. .+...+...-+-+|+...-.|.+. | ...+.|+.++
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr--~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFR--RPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEec--CCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 49999999999999999987765544333334333221 112445555677899999999987 3 2238999998
Q ss_pred cccC
Q psy12422 117 IKSS 120 (356)
Q Consensus 117 ~~~~ 120 (356)
..+.
T Consensus 261 ~~V~ 264 (466)
T PHA03270 261 DEVF 264 (466)
T ss_pred cccc
Confidence 8774
No 378
>PHA02982 hypothetical protein; Provisional
Probab=96.91 E-value=0.0031 Score=47.69 Aligned_cols=75 Identities=17% Similarity=0.352 Sum_probs=53.3
Q ss_pred CceeecCCCeEEEEEEE-cCCCCCeEEEEECC-EEcc----------C--------CCceeEEEeCCEEEEEEccCCCCC
Q psy12422 197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNG-QPLN----------S--------SNILDLKYKNGVASLQIQEVFPED 256 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g-~~~~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d 256 (356)
-++....++++.|.|.. ++.......|+.+. ..+. . ...+....++..++|+|++++.+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 34456679999999996 34445568898743 2221 1 123344566778999999999999
Q ss_pred CeEEEEEEEcCCCce
Q psy12422 257 EGVYVCTATNSLGTA 271 (356)
Q Consensus 257 ~G~Y~C~a~n~~g~~ 271 (356)
.|-|+|+|....+..
T Consensus 112 ~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 112 LGCFTCEAKDAEGKE 126 (251)
T ss_pred CCceEEEEecCCCch
Confidence 999999999866543
No 379
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.87 E-value=0.13 Score=43.70 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=51.2
Q ss_pred eEEEEEeeCCCCCCeEEEEEEEeCCce--eEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---CC--ceeee
Q psy12422 40 VVSMEIIDCKPEDSGEYKCVATNKHGT--DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PA--PAIIT 112 (356)
Q Consensus 40 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~--p~i~w 112 (356)
...|.|+++...|+|.|+-...+.... .+....+.+...++ ...+....+-+|+...-.|.+. |+ ..+.|
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPP---sVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPA---SVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCC---CccccCCccccCCCceEEEEeeeecCCCceEEEE
Confidence 347999999999999775544443222 23334444444322 2334455567899999999987 32 23899
Q ss_pred cccccccCCc
Q psy12422 113 TRQEIKSSYS 122 (356)
Q Consensus 113 ~~~~~~~~~~ 122 (356)
+.++......
T Consensus 283 f~nG~~V~~~ 292 (490)
T PHA03271 283 RQNGNIATPR 292 (490)
T ss_pred EeCCccccCc
Confidence 9997766443
No 380
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.83 E-value=0.17 Score=42.66 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=50.8
Q ss_pred CceeecCCCeEEEEEEEc--CCC-CCeEEEEECCEEccCC-----------------CceeEE------EeCCEEEEEEc
Q psy12422 197 TDKTIDDGQCLDLSAVVK--GDP-EPRVSWTKNGQPLNSS-----------------NILDLK------YKNGVASLQIQ 250 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~--g~p-~p~i~W~~~g~~~~~~-----------------~~~~~~------~~~~~~~L~i~ 250 (356)
....+..|..+.|.|... |+. ...+.|...|.++.+. ..+.+. .+.-.++|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 556777899999999984 444 4569998766555421 111111 12234799999
Q ss_pred cCCCCCCeEEEEEEEcCCC
Q psy12422 251 EVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 251 ~v~~~d~G~Y~C~a~n~~g 269 (356)
+++-+.+|-|.|+|....-
T Consensus 352 ka~I~N~GCY~~~a~~g~~ 370 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKF 370 (500)
T ss_pred eEEEEcCCceEEEEecCcc
Confidence 9999999999999987643
No 381
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.80 E-value=0.0046 Score=41.78 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCceEEEEEecc-C-CC-CeeEEeeCCEEcccCCeeEEecCCeEEE-EEeeCCCCC--C-eEEEEEEEeCCc
Q psy12422 1 MQNVIKVKVGST-K-PP-PTVKWYKGNRELSKRDYSMSYSDGVVSM-EIIDCKPED--S-GEYKCVATNKHG 65 (356)
Q Consensus 1 g~~v~l~C~~~g-~-p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~L-~i~~~~~~D--~-G~Y~C~a~n~~g 65 (356)
++.++|.|.+.| + |. ..|+|.++|+.-..........++.+++ ....+..+| . ..|+|.+.+...
T Consensus 19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 19 GSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred CCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 356899999977 4 43 4789999987611111112233443321 112233333 3 459999987643
No 382
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.72 E-value=0.0033 Score=49.65 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=37.3
Q ss_pred CCCeeEEee-CCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 14 PPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 14 p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
..|.++|.- +|+.+....+......| .|.+.+.+..++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEEe
Confidence 358899998 56667655444445555 69999999999999999986543
No 383
>KOG4597|consensus
Probab=96.71 E-value=0.0025 Score=54.34 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=57.1
Q ss_pred CCceEEEEEeccCCCCeeEEee---CCEEcccCCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYK---GNRELSKRDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k---~g~~l~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
|+++.++|-+.|.|.+.|+|-+ |+..+-...... ..--....|.|-+....|+|-|+|.+.|..|.....+.+.
T Consensus 211 wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 211 WETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS 290 (560)
T ss_pred chhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence 5788999999999999999977 444332111000 0111234899999999999999999999999988888877
Q ss_pred Eec
Q psy12422 75 VES 77 (356)
Q Consensus 75 v~~ 77 (356)
+..
T Consensus 291 s~~ 293 (560)
T KOG4597|consen 291 SVK 293 (560)
T ss_pred eec
Confidence 653
No 384
>KOG0613|consensus
Probab=96.67 E-value=0.0027 Score=61.03 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=59.1
Q ss_pred CceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
..+.++.+..+++.|...+.+.|. +.|+.++........ ...........+.|..+...+.+.|.|.|.|..|....
T Consensus 342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred ceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 556778888999999999999887 999997766554332 22222233457899999999999999999999996654
No 385
>PHA03042 CD47-like protein; Provisional
Probab=96.51 E-value=0.02 Score=45.50 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCceEEEEEeccC-----CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 1 MQNVIKVKVGSTK-----PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 1 g~~v~l~C~~~g~-----p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
+++|.+.|.++.- -.-.+.|..||+.+-..+. . ...+|++.. ...-.|+|+|+|.+.....+....|.-
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~----t-n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN----T-NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC----C-cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence 5789999998531 2345899999988743211 1 224677764 344489999999876544455555544
Q ss_pred e
Q psy12422 76 E 76 (356)
Q Consensus 76 ~ 76 (356)
.
T Consensus 105 ~ 105 (286)
T PHA03042 105 V 105 (286)
T ss_pred E
Confidence 3
No 386
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.46 E-value=0.0045 Score=48.88 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=39.2
Q ss_pred CCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 217 PEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 217 p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
..|.+.|.- +|..++..+.+++...+ .|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 468899997 77777776666665443 69999999999999999987655
No 387
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.44 E-value=0.0062 Score=40.93 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=29.7
Q ss_pred ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEe
Q psy12422 36 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVE 76 (356)
Q Consensus 36 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~ 76 (356)
+....++|.|+.++..|+|.|..++++..|... ..+.+.|.
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 334445999999999999999999999888763 44665554
No 388
>PHA03042 CD47-like protein; Provisional
Probab=96.05 E-value=0.054 Score=43.16 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=47.4
Q ss_pred cCCCeEEEEEEEcCC-----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 202 DDGQCLDLSAVVKGD-----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 202 ~~g~~~~l~C~~~g~-----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
.-.+++.+.|.++.- -.-.++|..++..+-..+.. +.++|.+ +-...-.|+|+|+|.+.....+....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEE-eccccCCCceeEEEeecccCccEEEE
Confidence 347889999999642 24459999999887543332 1235655 34445589999999987766666555
Q ss_pred Ee
Q psy12422 277 LT 278 (356)
Q Consensus 277 l~ 278 (356)
+.
T Consensus 102 Lk 103 (286)
T PHA03042 102 LQ 103 (286)
T ss_pred EE
Confidence 54
No 389
>PHA03283 envelope glycoprotein E; Provisional
Probab=95.84 E-value=0.18 Score=44.30 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422 41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77 (356)
Q Consensus 41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 77 (356)
..|+|.+++.+++|.|+--.+++.+...+.+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4799999999999999999998877666777778876
No 390
>PHA03282 envelope glycoprotein E; Provisional
Probab=95.59 E-value=0.67 Score=40.23 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=28.8
Q ss_pred eeEEeCCeEEEEEecCCCCCCeEEEEEEE-cCCcceEEE
Q psy12422 287 DLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETK 324 (356)
Q Consensus 287 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~ 324 (356)
.+.|..++-.|.+.++..+++|-|.|++. |..-.+...
T Consensus 325 gL~~~~n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~Y 363 (540)
T PHA03282 325 GLGWYGHTVNLQLRDASEASGGLYVCVVYVNGHVHAWGH 363 (540)
T ss_pred cccccCCccceEecCCCcccCceEEEEEEECCeeeeeEE
Confidence 35666677799999999999999999976 444444443
No 391
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=95.13 E-value=0.22 Score=32.20 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE-EeCCceeEEEEEEEE
Q psy12422 16 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA-TNKHGTDETNCVVIV 75 (356)
Q Consensus 16 ~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~n~~g~~~~~~~l~v 75 (356)
+.+.|+-.+..+...+ . .+.+.....+|+|.+.|.| .+..-.......+.|
T Consensus 27 ~~~~l~~~~~k~~~~~-------~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKSLETK-------K--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEEEEES-------S--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCccccccc-------e--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4567766554332111 1 4556667889999999999 665555555555554
No 392
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.96 E-value=6.9 Score=42.66 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEE--EEEcCCCceEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC--TATNSLGTAETK 274 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~ 274 (356)
+...+..|+.++|.-...+-....++|..++..-........ .-+-...|.|.. .|.|..|+...+
T Consensus 1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------tHtf~~~G~y~VtVta~N~vss~~~s 1772 (2740)
T TIGR00864 1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------SHSFPSAGLHLVTMKAFNELGSANAS 1772 (2740)
T ss_pred cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------EEEccCCceEEEEEEEEcccccccee
Confidence 445567799999987777777888999975532211111100 011233566644 577888877766
Q ss_pred EEEec---CCCCccc----------------------------eeEEeC-CeEEEEEec--CCCCCCeEEEE--EEEcCC
Q psy12422 275 CKLTP---LNSSNIL----------------------------DLKYKN-GVASLQIQE--VFPEDEGVYVC--TATNSL 318 (356)
Q Consensus 275 ~~l~p---~~~~~~~----------------------------~~~~~~-~~~~L~i~~--v~~~d~G~Y~C--~a~n~~ 318 (356)
..+.+ .....+. .|.|.- +.....=+. .+..+.|.|+- .|+|.+
T Consensus 1773 ~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~AsN~v 1852 (2740)
T TIGR00864 1773 EEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNASNAV 1852 (2740)
T ss_pred EEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEEEEEccc
Confidence 55552 1111110 333421 111222233 44678999987 589999
Q ss_pred cceEEEEEEEEEecCCC
Q psy12422 319 GTAETKCKLTVRSTPAA 335 (356)
Q Consensus 319 g~~~~~~~l~V~~~p~~ 335 (356)
+....+..+.|+.+..-
T Consensus 1853 s~~~~s~~~~VQe~I~~ 1869 (2740)
T TIGR00864 1853 SGKSASREFFAEEPIFG 1869 (2740)
T ss_pred CcceeeeeEEEEEecce
Confidence 99999999999998753
No 393
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.83 E-value=0.091 Score=35.50 Aligned_cols=43 Identities=26% Similarity=0.456 Sum_probs=32.8
Q ss_pred eeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEE
Q psy12422 287 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 329 (356)
Q Consensus 287 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V 329 (356)
++.+...+-.|.|+.++.+|+|.|.-++.|..|.... .|.+.|
T Consensus 63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4555666789999999999999999999999887644 666555
No 394
>PHA03271 envelope glycoprotein C; Provisional
Probab=94.55 E-value=1.3 Score=37.89 Aligned_cols=115 Identities=11% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCceEEEEEecc-CCCC--eeEEeeCCEEcccCC---eeE-Ee--cCC---eEEEEEeeCCCCCCeEEEEEEEeCCceeE
Q psy12422 1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSKRD---YSM-SY--SDG---VVSMEIIDCKPEDSGEYKCVATNKHGTDE 68 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~~~---~~~-~~--~~~---~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~ 68 (356)
||+..-.|.+.. +|+- .++||+||.++...+ ... .. .++ .++|++.+...+..=..+|.+.-......
T Consensus 260 Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~ 339 (490)
T PHA03271 260 GENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMI 339 (490)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCce
Confidence 788899999954 4543 589999999886432 111 11 111 12333333322233489999875544222
Q ss_pred EEEEEEEeccccchhhhhhcccccccCccceeeecccC-Cceeeeccccccc
Q psy12422 69 TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRP-APAIITTRQEIKS 119 (356)
Q Consensus 69 ~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p-~p~i~w~~~~~~~ 119 (356)
.+..-.+. +. .-......+.+++....|....-| .-.+.|+-.+...
T Consensus 340 s~rnAaat--P~--VY~~P~ISv~FedG~AVCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 340 STTNATAI--PT--VYHHPRISLAFKDGYAICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred eeeecccC--Cc--cccCCeEEEEEeCCEEEEeccccCCCcEEEEEecCCCC
Confidence 22211111 00 000111223455555555433223 4458898765543
No 395
>PHA03269 envelope glycoprotein C; Provisional
Probab=94.16 E-value=1.7 Score=38.17 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCceEEEEEecc-CCCC--eeEEeeCCEEccc
Q psy12422 1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSK 29 (356)
Q Consensus 1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~ 29 (356)
||+..-.|.+.. +|+- .++||+||.++..
T Consensus 342 Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 342 GNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 788889999954 4543 5899999999874
No 396
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.07 E-value=0.73 Score=30.55 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=43.3
Q ss_pred ceeecCCCeEEEEEEEcCC-----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422 198 DKTIDDGQCLDLSAVVKGD-----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264 (356)
Q Consensus 198 ~~~v~~g~~~~l~C~~~g~-----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (356)
...+..|+.++..|...-. ....|.|..|+..++... ......+.+.+++.+......-.|-|..
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q--y~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ--YRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC--EEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH--cceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 3468899999999999422 345699999998776543 2334455578888888777777777763
No 397
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.89 E-value=0.42 Score=31.70 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=40.6
Q ss_pred CCceEEEEEec-c----CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422 1 MQNVIKVKVGS-T----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60 (356)
Q Consensus 1 g~~v~l~C~~~-g----~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 60 (356)
|.+|+..|... + .....|.|..|+..++.+++.. ..++.+++++.+.....+-.|-|..
T Consensus 18 GS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~-in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 18 GSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRV-INDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp TS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEE-ESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcce-eCCeEEEEEEccCCCCCceEEEEEE
Confidence 78999999983 2 2455799999999888777644 5555578888877666666777764
No 398
>KOG0613|consensus
Probab=92.85 E-value=0.35 Score=47.39 Aligned_cols=130 Identities=13% Similarity=0.031 Sum_probs=88.0
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 276 (356)
..-...++....|.|.+.+.+.+.+.|..++...... ..+..++.|.+....+.+.|+|...+..+.....+.
T Consensus 237 ~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~ 309 (1205)
T KOG0613|consen 237 SMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVT 309 (1205)
T ss_pred ccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeee
Confidence 3344567788899999999999998888765443322 122236778888888889999999998887776655
Q ss_pred EecCCC--------------------Cccc--------------------------eeEEe-------------------
Q psy12422 277 LTPLNS--------------------SNIL--------------------------DLKYK------------------- 291 (356)
Q Consensus 277 l~p~~~--------------------~~~~--------------------------~~~~~------------------- 291 (356)
..+... .... ...+.
T Consensus 310 ~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1205)
T KOG0613|consen 310 EEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGT 389 (1205)
T ss_pred EEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccccc
Confidence 541100 0000 01111
Q ss_pred CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422 292 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333 (356)
Q Consensus 292 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 333 (356)
.....+.|..+...+.+.|.|.|.|..|.........|...+
T Consensus 390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~ 431 (1205)
T KOG0613|consen 390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM 431 (1205)
T ss_pred ccCcchhhhhcCcccccccccceeccCCcccccchhhccccc
Confidence 133678999999999999999999999977665555555543
No 399
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.61 E-value=0.48 Score=39.75 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=16.9
Q ss_pred eEEEEEEEcCCCCC--eEEEEEC
Q psy12422 206 CLDLSAVVKGDPEP--RVSWTKN 226 (356)
Q Consensus 206 ~~~l~C~~~g~p~p--~i~W~~~ 226 (356)
.++|.|.|.|+-|. .+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999885443 4889999
No 400
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.38 E-value=0.55 Score=39.40 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=35.9
Q ss_pred ceEEEEEeccC-CC-CeeEEeeC---------C---EEcccCC----------e-eEEecC-CeEEEEEe-eCCCCCCeE
Q psy12422 3 NVIKVKVGSTK-PP-PTVKWYKG---------N---RELSKRD----------Y-SMSYSD-GVVSMEII-DCKPEDSGE 55 (356)
Q Consensus 3 ~v~l~C~~~g~-p~-~~v~W~k~---------g---~~l~~~~----------~-~~~~~~-~~~~L~i~-~~~~~D~G~ 55 (356)
.++|+|.|.|. |. ..+.|.|| | ..+..+. . ..-..+ +.+.++.. .+...|...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 47899999885 44 36899999 4 2221111 0 111234 35443322 344567778
Q ss_pred EEEEEEeCC
Q psy12422 56 YKCVATNKH 64 (356)
Q Consensus 56 Y~C~a~n~~ 64 (356)
|+|.+....
T Consensus 296 Y~C~V~Hsg 304 (338)
T PHA02865 296 IVCVVFHST 304 (338)
T ss_pred cEEEEEeCC
Confidence 999997753
No 401
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.20 E-value=0.94 Score=30.05 Aligned_cols=67 Identities=12% Similarity=0.342 Sum_probs=40.5
Q ss_pred eEEEEEe-ccCCCCeeEEee--CCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422 4 VIKVKVG-STKPPPTVKWYK--GNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73 (356)
Q Consensus 4 v~l~C~~-~g~p~~~v~W~k--~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 73 (356)
+.-.|.+ .|.|++.|+|.- +|.. . .......+|. +.+.+.+.+..|.-.-+|.+....-.....+.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e--tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E--FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e--eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4458995 899999999985 2332 1 0112223332 245566777888889999997753333333333
No 402
>PHA03270 envelope glycoprotein C; Provisional
Probab=92.09 E-value=1.2 Score=38.35 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=47.1
Q ss_pred CCCCeecccCCceeecCCCeEEEEEEEcC-CCCC--eEEEEECCEEccCCCceeE---EEeCC---EEEEEEccCCCCC-
Q psy12422 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP--RVSWTKNGQPLNSSNILDL---KYKNG---VASLQIQEVFPED- 256 (356)
Q Consensus 187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p--~i~W~~~g~~~~~~~~~~~---~~~~~---~~~L~i~~v~~~d- 256 (356)
+.+|.+.+.+. .+.+|+...-.|.+.. +|+- .++||+||.++........ ...++ .++|++.....+.
T Consensus 219 yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~ 296 (466)
T PHA03270 219 FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAP 296 (466)
T ss_pred ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCC
Confidence 56676665543 4788999999999965 4532 4999999998854322221 11122 2344444333222
Q ss_pred CeEEEEEEEcCC
Q psy12422 257 EGVYVCTATNSL 268 (356)
Q Consensus 257 ~G~Y~C~a~n~~ 268 (356)
--..+|.+.=..
T Consensus 297 PPsLrC~v~W~r 308 (466)
T PHA03270 297 PRNLTCEFTWHR 308 (466)
T ss_pred CCCceEEEEEcc
Confidence 237899885433
No 403
>PHA03052 Hypothetical protein; Provisional
Probab=91.24 E-value=0.78 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.0
Q ss_pred CceeecCCCeEEEEEEEc-CCC--CCeEEEEECCEEcc
Q psy12422 197 TDKTIDDGQCLDLSAVVK-GDP--EPRVSWTKNGQPLN 231 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~-g~p--~p~i~W~~~g~~~~ 231 (356)
..+.+..|..++|.|.+. |.| .+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 456788899999999993 333 45688999998874
No 404
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.08 E-value=0.11 Score=45.86 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=0.0
Q ss_pred EEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEec
Q psy12422 42 SMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVES 77 (356)
Q Consensus 42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~ 77 (356)
.|.|.+++.+|+|.|+-...+..+... ..+.|.|..
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp -------------------------------------
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 699999999999999999987765543 335566654
No 405
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.07 E-value=28 Score=38.44 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=46.9
Q ss_pred CCCCCeEEEEE--EEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccc
Q psy12422 49 KPEDSGEYKCV--ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQE 116 (356)
Q Consensus 49 ~~~D~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~ 116 (356)
+..++|.|+-. |.|..+....+..+.|.++...... ......+..|+.++|.+...+.+.+.+.++.
T Consensus 1835 Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L-~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~f 1903 (2740)
T TIGR00864 1835 TFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLEL-KASKKIAAIGEKVEFQILLAAGSAVNFRLQI 1903 (2740)
T ss_pred ecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEE-ecccccccCCCEEEEEEEecCCCceEEEEEe
Confidence 56789999875 6788888888888888776433322 2334467789999999988866665544433
No 406
>KOG1026|consensus
Probab=90.82 E-value=0.89 Score=42.70 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=43.2
Q ss_pred CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
|..+++.|.+.+.|-|.+.|+.++............-... ...+.+ +.|.+.|..|.....+.+.+.
T Consensus 207 ~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~--------~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 207 GSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSE-CEVLEN--------DLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred cchheeeeecccCCCcceeeecccccccCCCccccccccc-ceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence 4578999999999999999999877665432111111111 111111 899999988877666665554
No 407
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.37 E-value=3.4 Score=26.77 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred EEEEccCCCCCCeEEEEEE-EcCCCceEEEEEE
Q psy12422 246 SLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKL 277 (356)
Q Consensus 246 ~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l 277 (356)
.+........|+|.+.|.| .+..-.......+
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i 76 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEI 76 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence 4567788889999999999 5555544444444
No 408
>PHA03273 envelope glycoprotein C; Provisional
Probab=90.17 E-value=3.5 Score=36.03 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=48.4
Q ss_pred CCCCeecccCCceeecCCCeEEEEEEEcCC-CC--CeEEEEECCEEccC-CCcee-E--EEeCC---EEEEEEccCCC-C
Q psy12422 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE--PRVSWTKNGQPLNS-SNILD-L--KYKNG---VASLQIQEVFP-E 255 (356)
Q Consensus 187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--p~i~W~~~g~~~~~-~~~~~-~--~~~~~---~~~L~i~~v~~-~ 255 (356)
+.+|.+.+.+. .+.+|+...-.|.+..+ |+ ..++||+||.++.. ..... . ..++. .++|++..... +
T Consensus 235 yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~ 312 (486)
T PHA03273 235 YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEE 312 (486)
T ss_pred ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCC
Confidence 55666655443 47899999999999654 53 24999999998873 22111 1 11122 24565555433 3
Q ss_pred CCeEEEEEEEcC
Q psy12422 256 DEGVYVCTATNS 267 (356)
Q Consensus 256 d~G~Y~C~a~n~ 267 (356)
..-..+|.+.=.
T Consensus 313 ~PP~lrC~v~W~ 324 (486)
T PHA03273 313 YTPSLRCSIEWY 324 (486)
T ss_pred CCCCceEEEEEc
Confidence 345789987533
No 409
>KOG1026|consensus
Probab=89.62 E-value=0.096 Score=48.75 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=73.8
Q ss_pred eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
..+..|..+++.|.+.+.|.|.+.|+.++............-. .....+.+ +.|.+.|..|....++.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec--------hhhHHHHhhhhcCceeeeE
Confidence 4577899999999999999999999987765544321110000 01112221 7888888888766544444
Q ss_pred cC-------------------------CCCccc-------eeEEeC------Ce--EEEEEecCCCCCCeEEEEEEEcCC
Q psy12422 279 PL-------------------------NSSNIL-------DLKYKN------GV--ASLQIQEVFPEDEGVYVCTATNSL 318 (356)
Q Consensus 279 p~-------------------------~~~~~~-------~~~~~~------~~--~~L~i~~v~~~d~G~Y~C~a~n~~ 318 (356)
.. ++.... ..++.+ .. .-+....-...+.|.|+|++.|..
T Consensus 272 ~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~ 351 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPG 351 (774)
T ss_pred EecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeecccC
Confidence 10 000000 111111 00 223333335667899999999999
Q ss_pred cceEEEEEEEEEecC
Q psy12422 319 GTAETKCKLTVRSTP 333 (356)
Q Consensus 319 g~~~~~~~l~V~~~p 333 (356)
|.........++..|
T Consensus 352 g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 352 GKNYCRNPGGFMSRP 366 (774)
T ss_pred ccccccCcCccccCC
Confidence 887776666666666
No 410
>PHA03281 envelope glycoprotein E; Provisional
Probab=89.30 E-value=4.9 Score=35.90 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=28.8
Q ss_pred EEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEecc
Q psy12422 42 SMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVESE 78 (356)
Q Consensus 42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~ 78 (356)
.|+|.+++..++|.|+--.+...|.. .+.+.|.|.+.
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~ 336 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGD 336 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCC
Confidence 79999999999999999888666644 34666777653
No 411
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=89.02 E-value=3.1 Score=27.58 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=34.1
Q ss_pred EEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422 5 IKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69 (356)
Q Consensus 5 ~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 69 (356)
.|.+.+.+. .+.+.||-||+.+..... .. .+.+ .....|.|+..+.+..|...+
T Consensus 33 ~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~--~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 33 PLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GH--QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred eEEEEEeCC-CCcEEEEECCEEcccCCC-----CC--eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 445555444 448999999999943211 11 2322 345679999998888777644
No 412
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=88.03 E-value=4.6 Score=25.02 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=36.3
Q ss_pred eeEEeeCCEEcccCCeeEEecCCeE-EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 17 TVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 17 ~v~W~k~g~~l~~~~~~~~~~~~~~-~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
...||++|+.+..-...+. ++.. +-.-+.....+.|.++..+....|..-......|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~--g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPIS--GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEecc--CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4689999998764322222 2211 2223334457899999999988888766655544
No 413
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=87.86 E-value=12 Score=29.45 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=32.4
Q ss_pred EEEEEEcCCCC--CeEEEEECCEEccCCCceeEEE--eCCEEEEEEccCCCC--CCe--EEEEEEEcC
Q psy12422 208 DLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFPE--DEG--VYVCTATNS 267 (356)
Q Consensus 208 ~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~--~~~~~~L~i~~v~~~--d~G--~Y~C~a~n~ 267 (356)
..-|.+.--|. ..+.|+-++............. .+.-....|++.... ..| .|+|.+...
T Consensus 93 ~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GY 160 (211)
T PF02124_consen 93 YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGY 160 (211)
T ss_pred EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeC
Confidence 44688877774 4699998776542222111110 011124555554443 345 899988654
No 414
>PHA03286 envelope glycoprotein E; Provisional
Probab=85.65 E-value=14 Score=32.48 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.5
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278 (356)
Q Consensus 245 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 278 (356)
..|+|.+++...+|.|+-...|..|....++.+.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflV 160 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVV 160 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEE
Confidence 4799999999999999999998877665555444
No 415
>COG5475 Uncharacterized small protein [Function unknown]
Probab=85.07 E-value=2.6 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326 (356)
Q Consensus 289 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 326 (356)
+.+.+....++...+. .|.|.|...+..|.....|.
T Consensus 12 ~lKsGGP~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~~F~ 47 (60)
T COG5475 12 TLKSGGPRMTVSGYSS--DGMYECRWFDGYGVKREAFH 47 (60)
T ss_pred EeecCCceEEEecccc--CCeEEEEEecCCCccccccc
Confidence 3444556677766654 39999999999996655443
No 416
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.70 E-value=4.7 Score=26.88 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=36.7
Q ss_pred EEEEEEE-cCCCCCeEEEEE--CCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422 207 LDLSAVV-KGDPEPRVSWTK--NGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLG 269 (356)
Q Consensus 207 ~~l~C~~-~g~p~p~i~W~~--~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 269 (356)
+.-.|.+ .|.|++.|+|.- +|.. ... .....++. .+.+.+-.....|.-..+|.+.....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq--~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQ--EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-eee--eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 5568985 999999999975 2321 000 00000111 24566667777788899999987643
No 417
>PHA03283 envelope glycoprotein E; Provisional
Probab=84.59 E-value=4.9 Score=35.82 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=37.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~ 338 (356)
..+.|.|.+++.+++|.|+=-.+|..+.....+.|+|+.++.-+..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~ 177 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT 177 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC
Confidence 4578999999999999999999998776666888999886554433
No 418
>PHA03112 IL-18 binding protein; Provisional
Probab=84.45 E-value=2.2 Score=30.73 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=44.3
Q ss_pred ecCCCeEEEEEEEcCC-CC-CeEEEEECCE-Ecc-------------CCCceeEEEeCCEEEEEEccCCCC-CCeEEEEE
Q psy12422 201 IDDGQCLDLSAVVKGD-PE-PRVSWTKNGQ-PLN-------------SSNILDLKYKNGVASLQIQEVFPE-DEGVYVCT 263 (356)
Q Consensus 201 v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~-~~~-------------~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~ 263 (356)
..+++++.|+|.+-++ |. ..+-|..++. ... ...........-...|.+.+++.+ ..-.++|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 4569999999999655 65 4488997542 211 111111111122356787888865 44489998
Q ss_pred EEcCCCceEEE
Q psy12422 264 ATNSLGTAETK 274 (356)
Q Consensus 264 a~n~~g~~~~~ 274 (356)
.....+..+.+
T Consensus 115 L~D~~~~~k~~ 125 (141)
T PHA03112 115 LMDLDGPIKKS 125 (141)
T ss_pred EecCCchhhHH
Confidence 88776655443
No 419
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=81.26 E-value=13 Score=24.54 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=35.2
Q ss_pred eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
...|.+.+.+. .+.+.|+.||..+...... ..+.+ .....|.|+-.+.+..|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45666666555 4499999999998332211 12222 224578888888888776543
No 420
>PHA03112 IL-18 binding protein; Provisional
Probab=81.09 E-value=9.8 Score=27.54 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=36.4
Q ss_pred CCceEEEEEeccC-CC-CeeEEeeCC-EEcccC----Ce--------eEE--ecCCeEEEEEeeCCCC-CCeEEEEEEEe
Q psy12422 1 MQNVIKVKVGSTK-PP-PTVKWYKGN-RELSKR----DY--------SMS--YSDGVVSMEIIDCKPE-DSGEYKCVATN 62 (356)
Q Consensus 1 g~~v~l~C~~~g~-p~-~~v~W~k~g-~~l~~~----~~--------~~~--~~~~~~~L~i~~~~~~-D~G~Y~C~a~n 62 (356)
|+++.|+|.+-++ |. ..+.|.+++ +.+... .+ ... ...-+..|++.+++.+ +.-.++|+...
T Consensus 38 ~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~D 117 (141)
T PHA03112 38 TEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLMD 117 (141)
T ss_pred CCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEec
Confidence 6889999999655 55 357999754 322110 00 000 1122346666776643 33378887765
Q ss_pred CCce
Q psy12422 63 KHGT 66 (356)
Q Consensus 63 ~~g~ 66 (356)
..+.
T Consensus 118 ~~~~ 121 (141)
T PHA03112 118 LDGP 121 (141)
T ss_pred CCch
Confidence 5443
No 421
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.00 E-value=5.2 Score=35.08 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=28.6
Q ss_pred eEEEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecC
Q psy12422 294 VASLQIQEVFPEDEGVYVCTATNSLGT--AETKCKLTVRSTP 333 (356)
Q Consensus 294 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~p 333 (356)
+.+|.|.+++.+|+|.|+-.+...-.. +.+.+.|.|...+
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~~ 164 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPRP 164 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCCC
Confidence 567999999999999999986443222 3445666666553
No 422
>PHA03189 UL14 tegument protein; Provisional
Probab=79.57 E-value=15 Score=30.31 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=19.2
Q ss_pred EEEEEeeCCCCCCeEEEEEEEeC-CceeEEE
Q psy12422 41 VSMEIIDCKPEDSGEYKCVATNK-HGTDETN 70 (356)
Q Consensus 41 ~~L~i~~~~~~D~G~Y~C~a~n~-~g~~~~~ 70 (356)
++|+++ +..+-+|.|.|...|. +|..-.+
T Consensus 134 ltLtF~-v~t~taG~Y~CvLrN~tHglv~~r 163 (348)
T PHA03189 134 LTLTFR-VSTSTAGMYECVLRNETHGLVLQR 163 (348)
T ss_pred EEEEEE-EEecccceEEEEeccccceeeeEE
Confidence 355554 4567799999999986 4443333
No 423
>PHA03240 envelope glycoprotein M; Provisional
Probab=79.53 E-value=8.7 Score=29.76 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=54.1
Q ss_pred CceeecCCCeEEEEEEEcCCCCCeEEEEECC-EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG-QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275 (356)
Q Consensus 197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 275 (356)
..+.+++|+.|+|--.---.|.-.+.|++.. ..+. ...+.+.-.|.-.-...+...++
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~---------------------G~G~~~~plC~Ytppk~~r~ktl 89 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGIT---------------------GNGDKLHPICTYDPPKNGKGKTL 89 (258)
T ss_pred eecccccCCceeeCCcccCCCCCEEEEEeeeccccc---------------------CCCCCCceeEEecCCcccccccc
Confidence 3456888999988643332466779999821 1111 11123333454433222222222
Q ss_pred EEecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcce
Q psy12422 276 KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321 (356)
Q Consensus 276 ~l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 321 (356)
...+.+ ..+.+.-.+++|.|..|..+|.|+|.-.--...|..
T Consensus 90 ~~t~~n----t~i~y~C~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 90 DESAEN----SFILYECHNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccccCC----CceEEEeccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 222222 134445578899999999999999854333334443
No 424
>PHA03052 Hypothetical protein; Provisional
Probab=79.03 E-value=3.8 Score=25.16 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=21.7
Q ss_pred CCceEEEEEe---ccCCCCeeEEeeCCEEcc
Q psy12422 1 MQNVIKVKVG---STKPPPTVKWYKGNRELS 28 (356)
Q Consensus 1 g~~v~l~C~~---~g~p~~~v~W~k~g~~l~ 28 (356)
|.+++|.|.+ .+...+.|.|.-|+..+.
T Consensus 12 Gs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 12 GSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred cCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 6789999999 334456789999988773
No 425
>PHA03189 UL14 tegument protein; Provisional
Probab=76.02 E-value=22 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=19.6
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 245 ASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 245 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
.+|++ ++..+-+|.|.|...|......
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccceee
Confidence 34444 5666789999999999876543
No 426
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=75.28 E-value=2.3 Score=25.77 Aligned_cols=46 Identities=13% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 5 IKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 5 ~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
+|+|..+.. .-+.||-||..+-. .... +|++.+ -.++|+|+-..+.
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlR------lt~~--Tlt~~~----ltcNFtCV~qSGh 47 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLR------LTQQ--TLTVVT----LTCNFTCVGQSGH 47 (71)
T ss_pred ceecCCCCC--CcccEEECCceeee------ecCC--eEeeee----eeEEeeecCCCCC
Confidence 578877543 45899999987742 1111 444432 3588999765543
No 427
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=71.46 E-value=12 Score=27.95 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=26.3
Q ss_pred eEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422 40 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 74 (356)
Q Consensus 40 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 74 (356)
..-|+|.+.+.+|+|.|.-++.-........+.+.
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 34799999999999999999976654444444443
No 428
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=67.45 E-value=2.2 Score=37.88 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCCCCCCCCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPAANLGKSP 341 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~ 341 (356)
..+.|.|.+++.+|+|.|+-..+|..|.... .+.|.|+.+...+..|.|
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p 136 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPP 136 (439)
T ss_dssp --------------------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCC
Confidence 3468999999999999999999987776654 678888877665433333
No 429
>PHA03281 envelope glycoprotein E; Provisional
Probab=65.78 E-value=33 Score=31.06 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=32.3
Q ss_pred eEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecC
Q psy12422 294 VASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTP 333 (356)
Q Consensus 294 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p 333 (356)
.+.|.|.+++.+++|.|+=-.+..-|.... .+.|+|+..+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 358999999999999999888877665444 7778888765
No 430
>PHA03286 envelope glycoprotein E; Provisional
Probab=64.87 E-value=33 Score=30.28 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEec
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRST 332 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~ 332 (356)
..+.|.|.+++.+++|.|+=-.+|.-|.... .+.|.|++.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 4478999999999999999999988776655 667778544
No 431
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=64.79 E-value=39 Score=22.54 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=48.3
Q ss_pred cccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422 193 ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272 (356)
Q Consensus 193 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 272 (356)
.+.|....|..|+++.+.|..+-.-+..+.|-- .-.+.......+...+.+.+++. | ..-.|.+.-......
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET------~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLET------SLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEES------SSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEE------ecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEE
Confidence 344556678999999999999633233355431 11122223344566888999996 4 466788876544455
Q ss_pred EEEEEecCCC
Q psy12422 273 TKCKLTPLNS 282 (356)
Q Consensus 273 ~~~~l~p~~~ 282 (356)
+++.+++..+
T Consensus 79 ~~~~ItVY~~ 88 (91)
T PF03921_consen 79 ASANITVYKP 88 (91)
T ss_dssp EEEEEEEEB-
T ss_pred eEEeeEEeCC
Confidence 5666654433
No 432
>PHA03240 envelope glycoprotein M; Provisional
Probab=58.97 E-value=14 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.2
Q ss_pred eEEEEEeeCCCCCCeEEEEE
Q psy12422 40 VVSMEIIDCKPEDSGEYKCV 59 (356)
Q Consensus 40 ~~~L~i~~~~~~D~G~Y~C~ 59 (356)
+++|.|..+..+|.|+|.=.
T Consensus 104 NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred cceEEEEEEeecCcchhhhc
Confidence 34899999999999999533
No 433
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=51.43 E-value=55 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred eecCCCeEEEEEEEcCCCCCeEEEEECC
Q psy12422 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNG 227 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g 227 (356)
.+..|+.+.|......-....+.|..++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4677899998887733334568999877
No 434
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=50.37 E-value=53 Score=20.76 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=28.8
Q ss_pred eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
....+..+.|.| ..|...|.+.-||..-...+ .+.-..+.....+.+.+.+....|....
T Consensus 11 ~~~~~~~v~l~~---~~~~~~I~YT~DGs~Pt~~s-----------~~Y~~Pi~i~~~~~vka~a~~~~g~~s~ 70 (75)
T PF03174_consen 11 TYDEGQTVTLSS---DTPGATIYYTLDGSEPTKSS-----------PLYTGPITIPESGTVKARAFDNGGNVSE 70 (75)
T ss_dssp EEEETTEEEEE----SSTTSEEEEESSSSSS---------------EE--CCC--B--S--EEEEE-TTS-B--
T ss_pred cEecCeEEEEEe---CCCCCEEEEEcCCCcccccC-----------cccCcCEEeCCCcEEEEEEEcCCCCcCc
Confidence 455588899998 34556788887775432221 2333456666677788888777665443
No 435
>KOG0200|consensus
Probab=50.17 E-value=2.3e+02 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273 (356)
Q Consensus 242 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 273 (356)
.....+.+.++...+.|.|.|...+..+....
T Consensus 114 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 145 (609)
T KOG0200|consen 114 GTFESGLIYNVSLTEAGEYLCWTGRTVGDGPN 145 (609)
T ss_pred CceEeeeeeccChhhcceeeccCCCccccccc
Confidence 34457899999999999999999874443333
No 436
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.99 E-value=37 Score=20.79 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=26.5
Q ss_pred ecCCCeEEEEEEEcCCCCCeEEEEE---CC--EEccCCCcee---EEEeCCEEEEEEccCCCCCCe
Q psy12422 201 IDDGQCLDLSAVVKGDPEPRVSWTK---NG--QPLNSSNILD---LKYKNGVASLQIQEVFPEDEG 258 (356)
Q Consensus 201 v~~g~~~~l~C~~~g~p~p~i~W~~---~g--~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G 258 (356)
|..|+.++|. |-|...+.|++ ++ ..+-...... +...=....|+|-+|...+.|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 4557776664 33445699984 22 2222222221 111111225777777776655
No 437
>PHA03290 envelope glycoprotein I; Provisional
Probab=48.17 E-value=53 Score=27.73 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=26.2
Q ss_pred eEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 40 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 40 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
..-|+|.+.+.+|+|.|..+++-.......-+.+.+
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv 163 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGL 163 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEE
Confidence 347999999999999999999765443333344433
No 438
>PHA03289 envelope glycoprotein I; Provisional
Probab=48.05 E-value=41 Score=28.15 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=26.1
Q ss_pred EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
.-|+|.+.+.+|+|.|.-++.-.......-+.+.+
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 37999999999999999999876544434444433
No 439
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=47.40 E-value=36 Score=19.98 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEecCCC---CCCeEEEEEEEcCCcceEE
Q psy12422 289 KYKNGVASLQIQEVFP---EDEGVYVCTATNSLGTAET 323 (356)
Q Consensus 289 ~~~~~~~~L~i~~v~~---~d~G~Y~C~a~n~~g~~~~ 323 (356)
+.+.+....++..+.. .+.+.|.|...+..|....
T Consensus 8 ~LKSGGp~MTV~~v~~~~~~~~~~v~C~WFd~~~~~~~ 45 (53)
T PF09926_consen 8 QLKSGGPRMTVTEVGPNAGASGGWVECQWFDGHGEQRE 45 (53)
T ss_pred EEccCCCCeEEEEccccccCCCCeEEEEeCCCCCcccc
Confidence 3444556677777754 4778999999998776443
No 440
>PHA03291 envelope glycoprotein I; Provisional
Probab=45.70 E-value=1.2e+02 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE-ecCCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR-STPAA 335 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p~~ 335 (356)
.+-.|+|.+...+|+|.|.-+++-.......-|.|.+. .+++-
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~~~~~~G 170 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLAAFPAEG 170 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeeeeeCCCC
Confidence 45689999999999999999998877666678888888 55443
No 441
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=44.70 E-value=57 Score=24.49 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.2
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 330 (356)
..-.|+|.+-+.+|+|.|.-+++=........+.+.+.
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v~ 159 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSVF 159 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEeee
Confidence 44569999999999999999988776555556665543
No 442
>PHA03292 envelope glycoprotein I; Provisional
Probab=44.39 E-value=43 Score=28.83 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=26.6
Q ss_pred EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422 41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75 (356)
Q Consensus 41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v 75 (356)
.-|+|.+.+.+|+|.|..++.-.......-+.+.+
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 47999999999999999999876544444444444
No 443
>PHA03292 envelope glycoprotein I; Provisional
Probab=44.14 E-value=1.4e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.1
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 334 (356)
.+..|+|.+-+.+|+|.|.-+++-........|.|.+.+...
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy~~ 167 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVYDF 167 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEecC
Confidence 456899999999999999999988766666777777766654
No 444
>PHA03290 envelope glycoprotein I; Provisional
Probab=40.78 E-value=78 Score=26.80 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN 336 (356)
Q Consensus 293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~ 336 (356)
..-.|+|.+-+.+|+|.|.-+++=..-....-|.|.+...|.-.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vyp~g~ 170 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVYPAGD 170 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEecCCC
Confidence 45679999999999999999998765555567777777776543
No 445
>KOG3611|consensus
Probab=36.93 E-value=82 Score=30.46 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=39.2
Q ss_pred eEEEEEeccCCCCeeEEeeC--C--E--EcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC-CceeEEEEEEEEe
Q psy12422 4 VIKVKVGSTKPPPTVKWYKG--N--R--ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK-HGTDETNCVVIVE 76 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~--g--~--~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~v~ 76 (356)
..|.|...+.- ..+.|+.. + . ++...........| .|.+..++..|.|.|.|.+... .-.......+.+.
T Consensus 572 ~~l~c~~~~~~-a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G--~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~ 648 (737)
T KOG3611|consen 572 EVLRCVPSSNQ-APVVWYHQSTKDGRKEEVRQRDVVSRTDEG--GLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVA 648 (737)
T ss_pred ceeeccccccc-cceeeEeeccCccccceeccCcceeecccC--ceeEEEEeeccCcccccccccCccccceEEEeeeec
Confidence 35777765543 34889852 2 1 22223333333333 3667778899999999998654 2223333444443
No 446
>PHA03291 envelope glycoprotein I; Provisional
Probab=34.61 E-value=97 Score=26.48 Aligned_cols=37 Identities=8% Similarity=-0.080 Sum_probs=28.3
Q ss_pred eEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422 40 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76 (356)
Q Consensus 40 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 76 (356)
..-|+|.+...+|+|.|..++.-.......-+.|-+.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 3479999999999999999998765555455555554
No 447
>PF15096 G6B: G6B family
Probab=31.08 E-value=60 Score=24.74 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCC
Q psy12422 302 VFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS 342 (356)
Q Consensus 302 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~ 342 (356)
+...|+|+|.|+-+ -..++...|.|.+.-.-...+.|+
T Consensus 81 Ls~GDSGTFfCkGr---~e~ESRT~LhVLGD~a~Cr~~gpt 118 (224)
T PF15096_consen 81 LSAGDSGTFFCKGR---QEEESRTVLHVLGDRADCRAPGPT 118 (224)
T ss_pred hhcCCccceEecCc---ccccceeeeeeecccccccCCCCC
Confidence 34679999999832 234557788898887766666555
No 448
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=30.90 E-value=1.6e+02 Score=19.39 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=17.1
Q ss_pred CCceEEEEEe--ccCCC---CeeEEeeCCEEc
Q psy12422 1 MQNVIKVKVG--STKPP---PTVKWYKGNREL 27 (356)
Q Consensus 1 g~~v~l~C~~--~g~p~---~~v~W~k~g~~l 27 (356)
|+.+.|...+ .|... ..+.||.+|..+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 5667777776 34322 257888888876
No 449
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=1.5e+02 Score=28.13 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=34.8
Q ss_pred eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67 (356)
Q Consensus 4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 67 (356)
+.|.-...|. ...+.||-||.++..... +. .+ .-...|.|.|+..+....|..
T Consensus 672 ~~l~l~~~g~-~~~~~W~lng~~l~~~~~-----~~--~~---~w~~~~~G~~~ltVid~~G~~ 724 (733)
T COG4953 672 VTLKLIAQGG-RGPIYWFLNGEPLGEASR-----NR--PV---TWKPEDAGYYKLTVIDASGRS 724 (733)
T ss_pred eEEEEEcCCC-cceeEEEeCCcCcccccc-----CC--cc---eeccCCCCeEEEEEEccCCce
Confidence 4555555443 345999999999975321 11 11 125678999999998887765
No 450
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=29.07 E-value=3e+02 Score=21.92 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=27.1
Q ss_pred eEEEEECCEEccCCCcee---EEEeCC---EEEEEEccC-CCCCCeEEEEEEEcCC
Q psy12422 220 RVSWTKNGQPLNSSNILD---LKYKNG---VASLQIQEV-FPEDEGVYVCTATNSL 268 (356)
Q Consensus 220 ~i~W~~~g~~~~~~~~~~---~~~~~~---~~~L~i~~v-~~~d~G~Y~C~a~n~~ 268 (356)
.++||.||..+....... ...++. .++|++... ..+..-..+|++.=..
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r 63 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYR 63 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEcc
Confidence 489999999887433221 112221 245666332 3333558899875433
No 451
>PHA03289 envelope glycoprotein I; Provisional
Probab=27.82 E-value=1.6e+02 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=31.8
Q ss_pred eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422 294 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333 (356)
Q Consensus 294 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 333 (356)
+-.|+|.+-+.+|+|.|.-+++=.......-|.|.+...+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~Vy~ 160 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVFVCS 160 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEEEEe
Confidence 3489999999999999999998776666667777766544
No 452
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=27.33 E-value=2e+02 Score=19.29 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=40.3
Q ss_pred CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422 1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 79 (356)
Q Consensus 1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 79 (356)
|+++.+.|... -|.| .+-|--. + .+.......+-..+.+.+++. | ..-.|.+.-......+++.++|..+|
T Consensus 18 G~Sv~VNCSts-C~~p~~~GLET~---L--~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 18 GGSVWVNCSTS-CPQPEKIGLETS---L--SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANITVYKPP 89 (91)
T ss_dssp TEEEEEEEEES-SSS-SEEEEESS---S--EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEEEEEB--
T ss_pred CCCEEEEEcCC-CCCCCcceEEEe---c--CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEeeEEeCCC
Confidence 78899999984 3333 3344221 1 111122233445788888885 5 56789887654455677888887654
No 453
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=26.09 E-value=3e+02 Score=21.03 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=34.9
Q ss_pred EEEec-cCCCCeeEEeeCCEEcccCCeeEE---ecCCe-----EEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422 7 VKVGS-TKPPPTVKWYKGNRELSKRDYSMS---YSDGV-----VSMEIIDCKPEDSGEYKCVATNKH 64 (356)
Q Consensus 7 ~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~---~~~~~-----~~L~i~~~~~~D~G~Y~C~a~n~~ 64 (356)
.|..+ =.-.|.|+|--....+..+.+... ..-|. +.+.|....-.|+-.|.|.+.-..
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 35542 234678999887666665443222 11222 245666667788899999986544
No 454
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=25.81 E-value=2.3e+02 Score=21.65 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=37.0
Q ss_pred EEEEcC-CCCCeEEEEECCEEccCCCceeE--EEeCC-----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422 210 SAVVKG-DPEPRVSWTKNGQPLNSSNILDL--KYKNG-----VASLQIQEVFPEDEGVYVCTATNSL 268 (356)
Q Consensus 210 ~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~--~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~ 268 (356)
.|.++- .-.|.|+|.-....+..+.-.+. ....+ .+...|...+-.|.-.|.|.+.-.-
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 477743 45788999886666665443322 11111 1356777777788889999886554
No 455
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=20.21 E-value=99 Score=17.90 Aligned_cols=19 Identities=21% Similarity=0.628 Sum_probs=14.4
Q ss_pred CCCCCCeEEEEEEEcCCcc
Q psy12422 302 VFPEDEGVYVCTATNSLGT 320 (356)
Q Consensus 302 v~~~d~G~Y~C~a~n~~g~ 320 (356)
+..+.+..+-|.++|.-|.
T Consensus 5 ilkdssnsflctvqnkng~ 23 (65)
T PF13220_consen 5 ILKDSSNSFLCTVQNKNGD 23 (65)
T ss_pred eeecCCCceEEEEecccHh
Confidence 3455667899999998875
Done!