RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12422
(356 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 179 bits (457), Expect = 7e-52
Identities = 69/381 (18%), Positives = 123/381 (32%), Gaps = 87/381 (22%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P + WYK + +L S Y M + + V S+ I D GEY C A N G ++
Sbjct: 32 TPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSA 91
Query: 72 VVIVESEEESKE-QQELAHNFLYSGDRKYIEKHI--RPAPAIITTR--QEIKSSYSSHTD 126
V++++ + ++L G E I + + + +K + T
Sbjct: 92 VLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151
Query: 127 DTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTT 176
+TL Y+ S++N + S++
Sbjct: 152 FIHNV----ATLQILQTDQSHVGQYNCSASNPLGT---------------------ASSS 186
Query: 177 KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL 236
+L + PP F K + G+ V G +++W K+ + +
Sbjct: 187 AKLTLSEHE--VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244
Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------ 278
+ A+L + +V D G Y C A+N G +L
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK 304
Query: 279 --------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
+ S+ + + VA L++ + ED G Y C
Sbjct: 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364
Query: 313 TATNSLGTAETKCKLTVRSTP 333
A N+ G+A + L V+ P
Sbjct: 365 EAHNAAGSASSSTSLKVKEPP 385
Score = 129 bits (327), Expect = 1e-33
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 187 MTPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
PP+F KL + + + + G PE +V W K+ + S+ + + VA
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
L++ + ED G Y C A N+ G+A + L
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407
Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
L S + +N + S+ I V D G Y C A+N +G+
Sbjct: 408 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Query: 323 TKCKLTVRSTP 333
+T+++ P
Sbjct: 468 CVGSITLKAPP 478
Score = 129 bits (326), Expect = 2e-33
Identities = 53/196 (27%), Positives = 72/196 (36%), Gaps = 46/196 (23%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM PP F L G+ + L V G PE R++W K L S+ +++KN VA
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
SL I +V D G Y C A NS+G + L
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 279 -------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 319
L L + + VA+LQI + G Y C+A+N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 320 TAETKCKLTVRSTPAA 335
TA + KLT+
Sbjct: 182 TASSSAKLTLSEHEVP 197
Score = 124 bits (314), Expect = 6e-32
Identities = 41/187 (21%), Positives = 63/187 (33%), Gaps = 44/187 (23%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
PP F K G + L ++G P +VSW K+ + L S + +N + S
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
+ I V D G Y C A+N +G+ +T
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI 501
Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
+ S+ + + Y +A+LQ P + G Y C N GT E
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 323 TKCKLTV 329
L+V
Sbjct: 562 CFATLSV 568
Score = 73.7 bits (181), Expect = 1e-14
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKP 50
++ VK P V WYK E+ + + MS+ + V +E+ +
Sbjct: 297 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 356
Query: 51 EDSGEYKCVATNKHGTDETNCVVIVES 77
EDSG+Y C A N G+ ++ + V+
Sbjct: 357 EDSGDYTCEAHNAAGSASSSTSLKVKE 383
Score = 72.9 bits (179), Expect = 2e-14
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSG 54
++ G+ PP V W+K REL Y + + + S+ I++ D G
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453
Query: 55 EYKCVATNKHGTDETNCVVIVES 77
EY+C A+N G+D + +++
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKA 476
Score = 71.0 bits (174), Expect = 1e-13
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 11 STKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
P +V W+K E+ + + +SYS+ + +++ +P ++G+Y C N+ GT E
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 69 TNCVVIV 75
+ V
Sbjct: 562 CFATLSV 568
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 154 bits (391), Expect = 1e-44
Identities = 60/294 (20%), Positives = 108/294 (36%), Gaps = 29/294 (9%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
K KV + K + WYK RE+S D + DG+ ++ I + +D+G Y+ + + G
Sbjct: 27 KCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85
Query: 66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIE------------KHIRPAPAIITT 113
D++ ++ E+ +E E+ S I+ + + +
Sbjct: 86 KDKSRLKLVDEAFKE--LMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWS 143
Query: 114 R--QEIKSSYSSHTDDTGRTTT-QMSTLSS----NYSSSTNNATSPSKKITRRMNSILDT 166
I+ S T TG Q++ + Y + ++ L
Sbjct: 144 HNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY---VMELFDGKTGHQKTVD--LSG 198
Query: 167 DSPSRSRSTTKELIMPPDTA-MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
+ + + + L TI +G+ L+L+ V GDP P VSW K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
Query: 226 NGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
N + L S + +LK++ A I V D G Y N G+ + ++
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 125 bits (316), Expect = 1e-33
Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 61/226 (26%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG 243
T P F L+ + + L V E + W K+ + ++ +K+G
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDG 59
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------------- 278
+ +L I E +D G+Y + G +++ KL
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 279 ----------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 310
+ S+ + LQI E P D+G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179
Query: 311 VCTATNSLGTAETKCKLTVRSTPAANL----GKSPSKESDKAPRFF 352
V + + L+ ++ A K + R
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225
Score = 78.4 bits (193), Expect = 1e-16
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCK 49
+ +V+ ++ G PPP V W K + L + I
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS 287
Query: 50 PEDSGEYKCVATNKHGTDETNCVVIVESEE 79
DSG+Y V NK+G++ ++ V V E
Sbjct: 288 TADSGKYGLVVKNKYGSETSDFTVSVFIPE 317
Score = 73.4 bits (180), Expect = 8e-15
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 3/110 (2%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
+ V V W + + + ++I + P D G+Y +
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185
Query: 63 KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIIT 112
+ + ++ +E+ E + K + + P ++T
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYA--EFQRLKQAAIAEKNRARVLGGLPDVVT 233
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 151 bits (382), Expect = 1e-43
Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 44/192 (22%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM PP F K + G+ V G +++W K+ + + + A
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
+L + +V D G Y C A+N G +L
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 279 -----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
+ S+ + + VA L++ + ED G Y C A N+ G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 322 ETKCKLTVRSTP 333
+ L V+ P
Sbjct: 182 SSSTSLKVKEPP 193
Score = 137 bits (347), Expect = 2e-38
Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 44/187 (23%)
Query: 189 PPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
PP+F KL + + + + G PE +V W K+ + S+ + + VA L
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
++ + ED G Y C A N+ G+A + L
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 217
Query: 279 --------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
L S + +N + S+ I V D G Y C A+N +G+
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 325 CKLTVRS 331
+T+++
Sbjct: 278 GSITLKA 284
Score = 78.2 bits (193), Expect = 1e-16
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
++ G+ PP V W+K REL S + Y + + + S+ I++ D G
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261
Query: 55 EYKCVATNKHGTDETNCVVIVES 77
EY+C A+N G+ + +++
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284
Score = 78.2 bits (193), Expect = 1e-16
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKP 50
++ VK P V WYK E+ + + MS+ + V +E+ +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 51 EDSGEYKCVATNKHGTDETNCVVIVES 77
EDSG+Y C A N G+ ++ + V+
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKE 191
Score = 72.1 bits (177), Expect = 1e-14
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P + W K NRE+ +Y M+ + ++ ++ D+G+Y C A+N G D +
Sbjct: 33 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92
Query: 73 VIVES 77
+ V+
Sbjct: 93 LGVQE 97
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 147 bits (372), Expect = 4e-43
Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 48/190 (25%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVAS 246
P F L + +G A + G P P VSW ++GQ +++S + ++ +G A
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
L I V + G Y ATN G A + +L
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 279 ------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 320
+ SS + + + SL I E +PED G Y ATNS+G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 321 AETKCKLTVR 330
A + +L V+
Sbjct: 185 ATSTAELLVQ 194
Score = 106 bits (266), Expect = 1e-27
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
++T EL++ +TA PP F +L T+ G + L V G P P V + ++G +
Sbjct: 88 QATSTAELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SS + + + SL I E +PED G Y ATNS+G A + +L
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
Score = 80.2 bits (198), Expect = 6e-18
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
+ V+ GS P P VK+Y+ E+ S D+ +S + S+ I + PEDSG
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 55 EYKCVATNKHGTDETNCVVIVE 76
Y ATN G + ++V+
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
Score = 77.1 bits (190), Expect = 7e-17
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPED 52
+ V GST P P V W++ + +S +S+SDG + I +
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 53 SGEYKCVATNKHGTDETNCVVIVESEEE 80
SG Y ATN G + ++V++E
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETA 102
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 151 bits (383), Expect = 1e-42
Identities = 60/362 (16%), Positives = 109/362 (30%), Gaps = 48/362 (13%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
W K + + ++++ + S+ + + D G Y+C A G + V+
Sbjct: 35 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR-VI 93
Query: 74 IVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDTGR 130
+ G ++ + P P I ++ + ++ D R
Sbjct: 94 SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
Query: 131 TTTQMSTLSSNYSSSTNNATSPSKKIT-RRMNSILDTDSPSRSRSTTKELIMPPDTAMTP 189
T + ++ T S K N+ +D + K +
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL-VEYEIKGVTKDNSGYKGE 212
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA--SL 247
P D G + + +P ++ KNG+ +N + + N + L
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK-CKLT----------PLNSSNI-----LDLK-- 289
+ PEDEGVY C N +G + KLT P + + +
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 290 -----------YKNGVA-----------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
N L I+ V D+G Y C ATN G + +
Sbjct: 333 VTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392
Query: 328 TV 329
V
Sbjct: 393 QV 394
Score = 97.7 bits (243), Expect = 7e-23
Identities = 44/305 (14%), Positives = 78/305 (25%), Gaps = 60/305 (19%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME--------IIDCKPEDSGE 55
+ + + P P + W K + + + + D +
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 56 YKCVATNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIR--------- 105
Y C A N +E V ++ + + Y +
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238
Query: 106 -PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSK 154
P + + + T T L Y+ N P
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ- 297
Query: 155 KITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDK-TIDDGQCLDLSAVV 213
S ++ P ++ K + GQ + + V
Sbjct: 298 -----------------KHSLKLTVVSAP-------KYEQKPEKVIVVKQGQDVTIPCKV 333
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G P P V W+ N +PL+ + L I+ V D+G Y C ATN G
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRA---TVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 274 KCKLT 278
+ +
Sbjct: 389 ETLVQ 393
Score = 86.5 bits (214), Expect = 5e-19
Identities = 41/212 (19%), Positives = 61/212 (28%), Gaps = 69/212 (32%)
Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYK------ 241
K +KT +G+ L + P+P ++W K + + + +
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 159
Query: 242 NGVASLQIQEVFPEDE---GVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------- 289
+G +L V ED YVCTA N+ E + +
Sbjct: 160 DG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Query: 290 -----------------------------YKNGVA------------------SLQIQEV 302
+KNG L +
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 303 FPEDEGVYVCTATNSLGTAETK-CKLTVRSTP 333
PEDEGVY C N +G + KLTV S P
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Score = 85.3 bits (211), Expect = 1e-18
Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 59/218 (27%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASL 247
P ++ + + L +++G+ + + SW K+G+ N + + SL
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-HNAALRKDEGSL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK------------------------------CK- 276
DEG Y C A G A ++ C
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL 124
Query: 277 -----------------LTPLNSSNILDLKYK---NGVASLQIQEVFPEDE---GVYVCT 313
P D + +G +L V ED YVCT
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCT 182
Query: 314 ATNSLGTAE-TKCKLTVRSTPAANLGKSPSKESDKAPR 350
A N+ E + ++ N G +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Score = 67.6 bits (165), Expect = 1e-12
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 52
+ VI VK G P P V W + LS +++ S + I K D
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS----GLVIKGVKNGD 371
Query: 53 SGEYKCVATNKHGTDETNCVVIV 75
G Y C ATN+HG +V V
Sbjct: 372 KGYYGCRATNEHGDKYFETLVQV 394
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 150 bits (381), Expect = 3e-42
Identities = 67/377 (17%), Positives = 119/377 (31%), Gaps = 77/377 (20%)
Query: 14 PPPTVKWYKGNRELSKRD---YSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
P P+ W + +R + SM G V+ E GEY+C A NK GT
Sbjct: 45 PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL 104
Query: 69 TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSH- 124
+N + + S+ ++ L + G ++ + P+P I ++
Sbjct: 105 SNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR 164
Query: 125 --TDDTGR---TTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKEL 179
G + + + ++Y + NA T + + T ++
Sbjct: 165 VSQGHNGDLYFSNVMLQDMQTDY---SCNARFHF------------THTIQQKNPFTLKV 209
Query: 180 IMPPDTAMTPPQF---ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL 236
+ A P F + + + G L L + G P P ++W K G L S
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA- 268
Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PL 280
K++N +L+I V ED G Y C A+N +G+ +
Sbjct: 269 --KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
Query: 281 NSSNILDLK-----------YKNGVA---------------SLQIQEVFPEDEGVYVCTA 314
L + NG ++ ++ VY C
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 386
Query: 315 TNSLGTAETKCKLTVRS 331
+N G ++V
Sbjct: 387 SNEHGYLLANAFVSVLD 403
Score = 81.8 bits (202), Expect = 2e-17
Identities = 36/217 (16%), Positives = 59/217 (27%), Gaps = 60/217 (27%)
Query: 187 MTPPQFANK-LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
PP + D +D + + KG+P P WT+N + N + + +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73
Query: 246 SLQIQEVFP----EDEGVYVCTATNSLGTAET---------------------------- 273
+L I E EG Y C A N GTA +
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAP 133
Query: 274 ---KCKLT---------------PLNSSNILDLKYKNGVASLQIQEVFPED-EGVYVCTA 314
+C + + + NG L V +D + Y C A
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNA 191
Query: 315 TNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRF 351
+ P + +++ P F
Sbjct: 192 RFHFTHT------IQQKNPFTLKVLTTRGVAERTPSF 222
Score = 60.3 bits (146), Expect = 3e-10
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P PTV+W L + + + + ++ D + Y+C +N+HG N
Sbjct: 339 NPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
Query: 71 CVVIVES 77
V V
Sbjct: 397 AFVSVLD 403
Score = 46.4 bits (110), Expect = 9e-06
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDS-GEYKCVAT 61
++ P P + W + E +D +S +G + + +D +Y C A
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNAR 192
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNFLY 93
++ E +F+Y
Sbjct: 193 FHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY 224
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 146 bits (369), Expect = 9e-41
Identities = 77/372 (20%), Positives = 116/372 (31%), Gaps = 78/372 (20%)
Query: 14 PPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
PP T +W EL D G + I + K +D+G Y+CVATN GT +
Sbjct: 35 PPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTVVSRE 92
Query: 72 VVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDT 128
+ + +E + G PA + E + + D
Sbjct: 93 ASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA---DG 149
Query: 129 GRTTTQMS-TL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
R +Q + L NY + AT + I S+ +
Sbjct: 150 RRFVSQTTGNLYIAKTEASDLGNY---SCFAT----------SHIDFITKSVFSKFSQLS 196
Query: 179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL 238
L P A D GQ + L G+P P++ W K S
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------ 250
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLNS 282
K+ + L IQ V EDEG Y C A N G + ++ + S
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGS 310
Query: 283 SNILDLK-----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLG 319
++G L+ ++ ED G+Y C A N G
Sbjct: 311 DLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370
Query: 320 TAETKCKLTVRS 331
T +LTV++
Sbjct: 371 TVYASAELTVQA 382
Score = 88.0 bits (218), Expect = 1e-19
Identities = 31/198 (15%), Positives = 46/198 (23%), Gaps = 50/198 (25%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
A + I +G + + + P W N P
Sbjct: 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------------- 289
+L I + D G Y C AT+ + S +
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217
Query: 290 ------------------------YKNGV----------ASLQIQEVFPEDEGVYVCTAT 315
K L IQ V EDEG Y C A
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 277
Query: 316 NSLGTAETKCKLTVRSTP 333
N G + ++ + + P
Sbjct: 278 NIKGRDTYQGRIIIHAQP 295
Score = 84.9 bits (210), Expect = 2e-18
Identities = 34/216 (15%), Positives = 54/216 (25%), Gaps = 61/216 (28%)
Query: 189 PPQFANKLTDKTIDDGQCLD---LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
P F + +G + L+ + +P W NG L + G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61
Query: 246 SLQIQEVF-PEDEGVYVCTATNSLGTAET------------------------------- 273
L I +D G Y C ATN+ GT +
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 274 KCKLT-----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
C + + + G +L I + D G Y C AT+
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATS 179
Query: 317 SLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFF 352
+ + + L + AP
Sbjct: 180 HIDFITKS-----VFSKFSQLSLAAEDARQYAPSIK 210
Score = 63.0 bits (153), Expect = 3e-11
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
KP P V+W + + L+ ++ + S G + EDSG Y+CVA NKHGT +
Sbjct: 321 KPRPAVRWLRDGQPLASQNR-IEVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377
Query: 73 VIVES 77
+ V++
Sbjct: 378 LTVQA 382
Score = 56.8 bits (137), Expect = 3e-09
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
G P P +KW K + + + S+ + I + ED G
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEP--LLHIQNVDFEDEGT 271
Query: 56 YKCVATNKHGTDETNCVVIVES 77
Y+C A N G D +I+ +
Sbjct: 272 YECEAENIKGRDTYQGRIIIHA 293
Score = 45.2 bits (107), Expect = 2e-05
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 2 QNVIKVKVGST----------KPPPTVKWYKGNRELSKRDYS---MSYSDGVVSMEIIDC 48
++ +K+ G P + +W +S + G ++ I
Sbjct: 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKT 165
Query: 49 KPEDSGEYKCVATNKHGTDETN 70
+ D G Y C AT+ +
Sbjct: 166 EASDLGNYSCFATSHIDFITKS 187
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 144 bits (364), Expect = 7e-40
Identities = 62/373 (16%), Positives = 115/373 (30%), Gaps = 74/373 (19%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSDG---VVSMEIIDC-KPEDSGEYKCVATNKHGTD 67
P P + W + + SDG D + + Y C+A N+ G+
Sbjct: 32 PMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91
Query: 68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-----PAPAIITTRQEIKSSYS 122
+ V + + E + + G+ I+ I + E ++ +
Sbjct: 92 ISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150
Query: 123 SHTDDTGRTTTQMSTL----------SSNYS-SSTNNATSPSKKITRRMNSILDTDSPSR 171
D L +Y + + T ++
Sbjct: 151 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR----------------L 194
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL- 230
S + + +I P ++ P A + + L +G P P W K +
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254
Query: 231 -NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
+ +L+ + K +L I++ ED G Y+C NS+G + LT
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314
Query: 279 -----PLNSSNILDLK-----------YKNGVA------SLQIQEVFPEDEGVYVCTATN 316
+ + K+G A L+I+ V ED+G+Y C N
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRN 374
Query: 317 SLGTAETKCKLTV 329
+AE +L +
Sbjct: 375 DRESAEASAELKL 387
Score = 100 bits (251), Expect = 5e-24
Identities = 50/300 (16%), Positives = 84/300 (28%), Gaps = 66/300 (22%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM------EIIDCKPEDS-GEYKC 58
+ V W+ E + + DG + I + PED Y+C
Sbjct: 126 LIPSFVADFVEVVSWHTDEEEN---YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182
Query: 59 VATNKHG--TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--------PAP 108
++ T + + E + + I PAP
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242
Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITR 158
+ + ++ R TL S Y N+ S +
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV- 301
Query: 159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
L T P +T+D G+ + G+P
Sbjct: 302 --------------------L-----TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336
Query: 219 PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
VSW K+G+ + S + L+I+ V ED+G+Y C N +AE +L
Sbjct: 337 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 60.0 bits (145), Expect = 3e-10
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDC 48
+Q +++ V T P P+ +WYK +++ + ++ I D
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277
Query: 49 KPEDSGEYKCVATNKHGTDETNCVVIVES 77
EDSG+Y CV N G + V+ V +
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTVTA 306
Score = 53.8 bits (129), Expect = 3e-08
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P TV W K + + S+ + I K ED G Y+C N + E +
Sbjct: 334 NPIKTVSWMKDGKAIGH-------SES--VLRIESVKKEDKGMYQCFVRNDRESAEASAE 384
Query: 73 VIV 75
+ +
Sbjct: 385 LKL 387
Score = 51.5 bits (123), Expect = 2e-07
Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 49/159 (30%)
Query: 189 PPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVAS 246
P F + T++ + ++ G+P P + W + +G + L +G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--K 60
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPED 306
L ED
Sbjct: 61 LVFPPFRAEDYRQ--------------------------------------------EVH 76
Query: 307 EGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
VY C A N G+ ++ + VR+ A +KE
Sbjct: 77 AQVYACLARNQFGSIISR-DVHVRAVVAQYYEADVNKEH 114
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 143 bits (363), Expect = 1e-39
Identities = 67/388 (17%), Positives = 116/388 (29%), Gaps = 81/388 (20%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDG---VVSMEIIDCKPEDSGEYKC 58
++ S + P +KW K L D +G + ++ D G Y+C
Sbjct: 40 LLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99
Query: 59 VATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQE 116
A+ + V + + + GD ++ + P P I + +
Sbjct: 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQ 159
Query: 117 IKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITRRMNSILDT 166
+ D+ L S Y S+ N A++
Sbjct: 160 QDLNPI--PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST--------------- 202
Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
R+ + + I+ F + ++ +G+ L V G P P +W +
Sbjct: 203 ----RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRG 258
Query: 227 GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----PLNS 282
+ + + +L I V +D G Y C T +LT P
Sbjct: 259 EEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL 316
Query: 283 SNILDLK-----------------------YKNGVA-------------SLQIQEVFPED 306
++ +L KNG +L+I V D
Sbjct: 317 NHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSD 376
Query: 307 EGVYVCTATNSLGTAETKCKLTVRSTPA 334
EG Y C A N G A++ +L V PA
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIVPK-PA 403
Score = 81.0 bits (200), Expect = 3e-17
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 51/201 (25%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLN-SSNILDLKYKN 242
F ++ +D G + L+ + D P + W K+G L + + N
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 243 G---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------PLNSS---- 283
G + ++ DEG+Y C A+ + + +
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMG 136
Query: 284 NILDLK-------------YKNGV----------------ASLQIQEVFPEDEGVYVCTA 314
+ + LK KN +LQI + P D GVY C+A
Sbjct: 137 DTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA 196
Query: 315 TNSLGTAETKC-KLTVRSTPA 334
N T ++ + S P
Sbjct: 197 RNPASTRTGNEAEVRILSDPG 217
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 147 bits (373), Expect = 2e-39
Identities = 59/379 (15%), Positives = 116/379 (30%), Gaps = 71/379 (18%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED------SGEYKCVATNKHGT 66
P P + W + + + + + ED + Y C+A N+ G+
Sbjct: 66 NPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGS 125
Query: 67 DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-----PAPAIITTRQEIKSSY 121
+ V + + E ++ + G+ I+ I + E ++ +
Sbjct: 126 IISRDVHVRAVVAQYYE-ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184
Query: 122 SSHTDDTGRTTTQMSTL----------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSR 171
D L +Y T + + +++ ++ T+ S
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
+ P ++ KT + L +G P P W K +
Sbjct: 245 AV--------PKVVSLAKFD------MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290
Query: 232 SSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
+L+ + K +L I++ ED G Y+C NS+G + LT
Sbjct: 291 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 350
Query: 279 -----PLNSSNILDLK-----------YKNGV------ASLQIQEVFPEDEGVYVCTATN 316
+ + K+G + L+I+ V ED+G+Y C N
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRN 410
Query: 317 SLGTAETKCKLTVRSTPAA 335
+AE +L +
Sbjct: 411 DRESAEASAELKLGGRFDP 429
Score = 130 bits (327), Expect = 2e-33
Identities = 61/382 (15%), Positives = 114/382 (29%), Gaps = 87/382 (22%)
Query: 14 PPPTVKWYKGNRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P P + W ++++ Y D V + I D G YKC+A +K G
Sbjct: 457 PTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Query: 68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR--QEIKSSYSS 123
E + + V ++ ++ A + +G+ + + P +I+ R + + +
Sbjct: 517 EHSAKLNVYGLPYIRQMEKKA---IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573
Query: 124 HTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI 180
G + +S Y T A + S +++
Sbjct: 574 KVFPNGTLIIENVERNSDQATY---TCVAKNQEGYSA--------------RGSLEVQVM 616
Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS-NILDL 238
+ P + + GQ L L V G P + WT +GQ ++ I
Sbjct: 617 VLPRIIPFAFE------EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTS 670
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLNS 282
+ + L I+ V G + C A N G + L S
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGS 730
Query: 283 SNILDLK-----------YKNGVA-------------------SLQIQEVFPEDEGVYVC 312
++ K K +L + + +EG Y+C
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 313 TATNSLGTAETKCKLTVRSTPA 334
A N +G+ + +
Sbjct: 791 EAINGIGSGLSAVIMISVQAHH 812
Score = 128 bits (324), Expect = 6e-33
Identities = 67/406 (16%), Positives = 104/406 (25%), Gaps = 116/406 (28%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDS-GEYKCV 59
+ V W+ E G + I + PED Y+C
Sbjct: 161 LIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCR 218
Query: 60 ATNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIR----------PAP 108
++ + E L D K P P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278
Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITR 158
+ ++ R TL S Y N+ S +
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV- 337
Query: 159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
L T P +T+D G+ + G+P
Sbjct: 338 --------------------L-----TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 219 PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
VSW K+G+ + S + L+I+ V ED+G+Y C N +AE +L
Sbjct: 373 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 422
Query: 279 ----------------------------------------------PLNSSN---ILDLK 289
+ +++ +
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 482
Query: 290 YKNG--VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
NG V+ L I V D G+Y C A + +G AE KL V P
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
Score = 109 bits (273), Expect = 3e-26
Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 45/294 (15%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID-CKPEDSG 54
+ G T P ++ W + NR L + +G ++ I + + D
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG--TLIIENVERNSDQA 593
Query: 55 EYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIIT 112
Y CVA N+ G + + G + + P I
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID 653
Query: 113 TRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN------ATSPSKKITRRMNSILDT 166
+ ++ T R + S L+ +++ A + + +
Sbjct: 654 WTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV-- 711
Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
PP++ + TDK G + G P+P+V+W K
Sbjct: 712 --------------------YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA 751
Query: 227 GQPLNSSNI---LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
+ +L + + +EG Y+C A N +G+ + +
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 106 bits (266), Expect = 2e-25
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 46/191 (24%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN---ILDLKYKNG-- 243
PP ++T++ G + L V G+P P +SW +G+ + +++ + NG
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------TPLNSSNI-----LDLK- 289
V+ L I V D G+Y C A + +G AE KL + I L +
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548
Query: 290 ------------YKNGVA-------------SLQIQEV-FPEDEGVYVCTATNSLG-TAE 322
++ A +L I+ V D+ Y C A N G +A
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 323 TKCKLTVRSTP 333
++ V P
Sbjct: 609 GSLEVQVMVLP 619
Score = 74.6 bits (183), Expect = 8e-15
Identities = 35/230 (15%), Positives = 63/230 (27%), Gaps = 65/230 (28%)
Query: 182 PPDTAMTPPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY 240
PPD P F + T++ + ++ G+P P + W ++ ++ L+
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTA-VGDVPGLRQ 89
Query: 241 KNGVASLQIQEVFPED------EGVYVCTATNSLGTAET--------------------- 273
+ L ED VY C A N G+ +
Sbjct: 90 ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149
Query: 274 ---------KCKLTPLNSSNILDLK-YKNGVA------------------SLQIQEVFPE 305
KC + + + + + + L I+EV PE
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209
Query: 306 D-EGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAI 354
D Y C + L R + S P+ ++
Sbjct: 210 DGYKSYQCRTKHRLTGET-------RLSATKGRLVITEPISSAVPKVVSL 252
Score = 71.9 bits (176), Expect = 7e-14
Identities = 34/264 (12%), Positives = 66/264 (25%), Gaps = 53/264 (20%)
Query: 43 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE------EESKEQQELAHNFLYSGD 96
M + + + + + VA G+ + +E + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFS-----NST 55
Query: 97 RKYIEKHIR--PAPAIITTR---QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN--- 148
IE P P II R + + + +Y +
Sbjct: 56 GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115
Query: 149 ---ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
A + I R + A+ + + + + G
Sbjct: 116 ACLARNQFGSIISRDVHV---------------------RAVVAQYYEADVNKEHVIRGN 154
Query: 206 CLDLSAVVK---GDPEPRVSWTKNGQPLNSSNILD----LKYKNGVASLQIQEVFPED-E 257
+ ++ D VSW + + L +G L I+EV PED
Sbjct: 155 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGY 212
Query: 258 GVYVCTATNSLGTAETKCKLTPLN 281
Y C + L
Sbjct: 213 KSYQCRTKHRLTGETRLSATKGRL 236
Score = 63.8 bits (155), Expect = 3e-11
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 4 VIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 54
V G P TV W K + + S+ V + I K ED G
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESV--LRIESVKKEDKG 402
Query: 55 EYKCVATNKHGTDETNCVVIVESEEE 80
Y+C N + E + + + +
Sbjct: 403 MYQCFVRNDRESAEASAELKLGGRFD 428
Score = 62.6 bits (152), Expect = 7e-11
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
+ V P + W + + + + I + +G + C A
Sbjct: 638 TLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHAR 697
Query: 62 NKHGTDETNCVVIVES 77
N G + + V
Sbjct: 698 NLAGHQQFTTPLNVYV 713
Score = 51.1 bits (122), Expect = 4e-07
Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 52/150 (34%)
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS------------------------ 282
+ + + ++ A + G+ +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 283 ---------------------SNILDLKYKNGVASLQIQEVFPED------EGVYVCTAT 315
++ L+ + L ED VY C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 316 NSLGTAETKCKLTVRSTPAANLGKSPSKES 345
N G+ ++ + VR+ A +KE
Sbjct: 121 NQFGSIISR-DVHVRAVVAQYYEADVNKEH 149
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 141 bits (356), Expect = 7e-39
Identities = 73/373 (19%), Positives = 118/373 (31%), Gaps = 80/373 (21%)
Query: 14 PPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
P P ++W ++ D+ S DG S+ I + K +D+G Y+C+ATN GT +
Sbjct: 36 PKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93
Query: 72 VVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDT 128
+ + E+ + + + + G + + E D
Sbjct: 94 AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP-----SYQDN 148
Query: 129 GRTTTQMS-TL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
R +Q + L NY+ N + K + IL D
Sbjct: 149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE---- 204
Query: 179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILD 237
P + G + L G+P P + W + +G+P+
Sbjct: 205 ----------PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--- 251
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLN 281
+ L+I ED G Y C A NS G K +LT +
Sbjct: 252 -RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME 310
Query: 282 SSNILDLK-----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSL 318
S + K KNG +L I V D G+Y C A N
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 319 GTAETKCKLTVRS 331
G + +L+V +
Sbjct: 371 GVIFSSAELSVIA 383
Score = 88.0 bits (218), Expect = 1e-19
Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 60/215 (27%)
Query: 188 TPPQFANKLTDKTI---DDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
+ P F + + + + + LS VKG+P+P + W NG ++ +G
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG- 62
Query: 245 ASLQIQEVF-PEDEGVYVCTATNSLGTAET------------------------------ 273
SL I +D G Y C ATNS GT +
Sbjct: 63 -SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 274 -KCKLT---------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
C P N + + G +L I +V D G Y C TN+
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNT 179
Query: 318 LGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFF 352
+ + V P + ++ + P+
Sbjct: 180 VTNHK------VLGPPTPLILRNDGVMGEYEPKIE 208
Score = 62.2 bits (151), Expect = 6e-11
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
I V + + +P PT +W K L RD + G ++ I D+G
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-IQIEQG--TLNITIVNLSDAGM 361
Query: 56 YKCVATNKHGTDETNCVVIVESE 78
Y+CVA NKHG ++ + V +E
Sbjct: 362 YQCVAENKHGVIFSSAELSVIAE 384
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 137 bits (347), Expect = 3e-38
Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 33/290 (11%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P W K + M D +D G Y C T+ G +
Sbjct: 29 TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
Query: 72 VVIVESEEESKE-----------QQELAHNFLYSGDRKYIEK--HIRPAPAIITTR--QE 116
+ E + + ELA L G ++ + + + +E
Sbjct: 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE 148
Query: 117 IKSSYS---SHTDDTGRTTTQMSTLSS----NYSSSTNNATSPSKKITRRMNSILDTDSP 169
I +TG M L Y+ + + + +++
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS------TVVLVGDV 202
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQ 228
+ E P F L+ + + L V E + W K+ +
Sbjct: 203 FKKLQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDER 261
Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ +K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 262 EISVDE--KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Score = 113 bits (283), Expect = 5e-29
Identities = 29/227 (12%), Positives = 56/227 (24%), Gaps = 63/227 (27%)
Query: 168 SPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTI-DDGQCLDLSAVVKGDPEPRVSWTKN 226
S K L+ P I + GQ K +V++ N
Sbjct: 86 SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN 145
Query: 227 GQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
+ + + G+ + ++++ EDEG Y + T + L
Sbjct: 146 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205
Query: 285 ILDLK----------------------------------------------YKNG----- 293
+ YK+
Sbjct: 206 LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
Query: 294 ---------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
+ +L I E +D G+Y + G +++ KL +
Sbjct: 266 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 109 bits (274), Expect = 9e-28
Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 62/224 (27%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P + + D L+ P+ SW+K+ S L+++ K +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKC----------------KLTPLNSSNILDLK--- 289
+++ +D G+Y C T++ G A + K + + L ++
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 290 ---------------------YKNG------------------VASLQIQEVFPEDEGVY 310
N + + ++++ EDEG Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 311 VCTATNSLGTAETKCKLTV---RSTPAANLGKSPSKESDKAPRF 351
+ T + L + + + P F
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Score = 82.7 bits (204), Expect = 5e-18
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++K KV + K + WYK RE+S + + DG+ ++ I + +D+G Y+ + +
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDD 298
Query: 64 HGTDETNCVVIVES 77
G D++ ++ E+
Sbjct: 299 RGKDKSRLKLVDEA 312
Score = 77.3 bits (190), Expect = 3e-16
Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 58
Q ++ V + +E+ K + + G++ M + + ED G Y
Sbjct: 124 QVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF 183
Query: 59 VATNKHGTDETNCVVIVESEEESKEQQELAHN 90
+ T+ + V++ + ++ +++ E
Sbjct: 184 QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 133 bits (336), Expect = 9e-38
Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 47/189 (24%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P ++ D T G+ LS + G P P + W + G+ L S + +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------------------ 278
+ EDEGVY C ATN +G ET KL
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTA 321
L +S + ++ L ++ V G Y +N GT
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 322 ETKCKLTVR 330
+ + ++
Sbjct: 187 DAILDVEIQ 195
Score = 81.3 bits (201), Expect = 2e-18
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
+P P +KWY+ +EL R Y MS ++ ++ + ED G Y C+ATN+ G ET+
Sbjct: 34 RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93
Query: 72 VVIVESE 78
+++++
Sbjct: 94 KLLLQAT 100
Score = 75.1 bits (185), Expect = 3e-16
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDC-K 49
++ VGST +P P + W+ G + L + + ++ ++ + + + +
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR 168
Query: 50 PEDSGEYKCVATNKHGTDETNCVVIVE 76
+G+YK +N GT + V ++
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 137 bits (346), Expect = 3e-37
Identities = 41/385 (10%), Positives = 93/385 (24%), Gaps = 82/385 (21%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
++V V ++ + W + L+ + + + GVVSM I+ +GE
Sbjct: 58 VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGE 117
Query: 56 YKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITT 113
Y ++ V + + ++ F ++ + P P +
Sbjct: 118 YLLFIQSEATNYTILFTVSIRNTLLYTLRRP---YFRKMENQDALVCISESVPEPIVEWV 174
Query: 114 RQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSR 173
+ + + + A + + R+ +I
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI---------- 224
Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNS 232
L + G+ L + V + ++W + L
Sbjct: 225 -------------DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Query: 233 SNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAET------------- 273
N ++ + + + V D G Y C+++ +
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331
Query: 274 ---------------KCKLTPLNSSNIL----------DLKYKNGVASLQIQEVFPEDEG 308
+ + K + S+ G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391
Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
Y+ A N L +RS
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 85.5 bits (211), Expect = 1e-18
Identities = 24/186 (12%), Positives = 41/186 (22%), Gaps = 45/186 (24%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
+ +D + L +V W LN DL GV S+
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK------------------- 289
I ++ G Y+ + ++ N+ +
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESV 166
Query: 290 -------YKNGV---------------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
+ E+F D C A N LG T+
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFT 223
Query: 328 TVRSTP 333
+
Sbjct: 224 IDLNQT 229
Score = 70.1 bits (171), Expect = 2e-13
Identities = 27/203 (13%), Positives = 46/203 (22%), Gaps = 57/203 (28%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ + + Q L + + PEP V W S
Sbjct: 139 NTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-EK 196
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
+ E+F D C A N LG T+
Sbjct: 197 VLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH 253
Query: 279 --------------PLNSSNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSL 318
L N ++ + + + V D G Y C+++
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 319 GTAETKCKLTVRSTPAANLGKSP 341
+ +T+ N S
Sbjct: 314 SQSAL---VTIVEKGFINATNSS 333
Score = 55.5 bits (133), Expect = 1e-08
Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 44/143 (30%)
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------- 289
K + + + + Y + + C L P +S + +
Sbjct: 9 VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYEAAAVEVDVSAS 65
Query: 290 -----------------YKNG---------------VASLQIQEVFPEDEGVYVCTATNS 317
V S+ I ++ G Y+ +
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 318 LGTAETKCKLTVRSTPAANLGKS 340
+++R+T L +
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRP 148
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 130 bits (329), Expect = 1e-36
Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 56/206 (27%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+T TPP+F D+T G GDP P++ W K G+ +++ +++ +G
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 244 -VASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
+ L+IQ + P DE +Y C A+N++G +LT
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 279 ---------------------------PLNSSN---ILDLKYKNGVASLQIQEVFPEDEG 308
P+++SN + + +LQI++ D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 309 VYVCTATNSLGTAET-KCKLTVRSTP 333
Y C ATNS GT + L VR T
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGTK 206
Score = 95.3 bits (237), Expect = 3e-23
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
S ST ++ P K ++ + + G+P+P ++W K+ P++
Sbjct: 91 SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD 150
Query: 232 SSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLT 278
+SN + + +LQI++ D+G Y C ATNS GT + L
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY 201
Score = 67.5 bits (165), Expect = 2e-13
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 14 PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTDETN 70
P P + W K +++S R + + DG S+ I P D Y+CVA+N G +
Sbjct: 34 PRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93
Query: 71 CVVIVESEEESKEQ 84
+ V E++
Sbjct: 94 TRLTVLREDQIPRG 107
Score = 67.5 bits (165), Expect = 2e-13
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPE 51
V+ T P P + W+K + + S+ + +++I +
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 52 DSGEYKCVATNKHGTDET-NCVVIVESEEESKEQ 84
D G+Y+CVATN GT + + V +
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 129 bits (326), Expect = 2e-36
Identities = 36/193 (18%), Positives = 55/193 (28%), Gaps = 51/193 (26%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
P F +L + + L V G P+P V W + G+ + + ++K G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------PLNSSNILDLK-------- 289
L I V +D VY ATN G+ L P + +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 290 ---------------YKNGV-----------------ASLQIQEVFPEDEGVYVCTATNS 317
K + + V +D G YV A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 318 LGTAETKCKLTVR 330
G + +L V
Sbjct: 184 FGIDQKTVELDVA 196
Score = 94.8 bits (236), Expect = 2e-23
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL- 230
S S T L + + P+ + G+ + + G P+P ++W K +
Sbjct: 87 SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146
Query: 231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
N+ + + ++ + + V +D G YV A N G + +L
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 77.1 bits (190), Expect = 7e-17
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 13 KPPPTVKWYKGNREL--SKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P P VKWY+ +E+ Y + + G + I +D+ Y+ ATN+ G+
Sbjct: 31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 70 NCVVIVESEEE 80
+ VE +
Sbjct: 91 TASLEVEVPAK 101
Score = 74.0 bits (182), Expect = 8e-16
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIID-CKPEDS 53
+ G KP P + W KG + Y + + S+ + + +D+
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 54 GEYKCVATNKHGTDETNCVVIVE 76
G Y A N+ G D+ + V
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVA 196
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 136 bits (342), Expect = 2e-35
Identities = 59/422 (13%), Positives = 113/422 (26%), Gaps = 104/422 (24%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
I K PPP +KWYK L + + I++ D+G Y + TN
Sbjct: 349 RIPAKYLGY-PPPEIKWYKNGIPLESNHTIKAGH----VLTIMEVSERDTGNYTVILTNP 403
Query: 64 HGTDETNCVVIVESEEE---SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIK 118
++ + VV + ++ + G + + + P P I +++
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463
Query: 119 SSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
++ T KI N + +++ ST
Sbjct: 464 EECANEPSQAVSVTNPYPCEEWRSVEDFQG----GNKIEVNKNQFALIEGKNKTVSTLVI 519
Query: 179 LIMPPDTAM--------------------TPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
+A+ T D + + + L
Sbjct: 520 Q-AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTF 578
Query: 219 PRVSWTKNGQPLNSSNILDL--------------------KYKNGVASLQIQEVFPEDEG 258
++W K G ++ +L N + ++++ +D+G
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 259 VYVCTATNSLGTAETKCKLT---------------------------------------- 278
YVC A +
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 279 -------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
L + + K+G +L I+ V EDEG+Y C A + LG A+ + +
Sbjct: 699 MWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Query: 332 TP 333
Sbjct: 757 AQ 758
Score = 115 bits (288), Expect = 2e-28
Identities = 48/395 (12%), Positives = 98/395 (24%), Gaps = 88/395 (22%)
Query: 5 IKVKVGST-------KPPPTVKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGE 55
+ +K +T + W +R SDG ++ I D+G
Sbjct: 41 LTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100
Query: 56 YKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQ 115
YKC V + + IT +
Sbjct: 101 YKCFYRETDLASVIYVYVQDYRSPFIASVSD------------------QHGVVYITENK 142
Query: 116 EIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS------- 168
+ + + N S K + S + + +
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202
Query: 169 --PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
S + +++ + + G+ L L+ + + + +
Sbjct: 203 KINDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261
Query: 227 GQPLNSSNILDLK----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276
+ + K +++L I V D+G+Y C A++ L T +
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 321
Query: 277 LTPLNSSNI-----------------LDLK-------------YKNGVA----------- 295
+ + + + YKNG+
Sbjct: 322 VRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH 381
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
L I EV D G Y TN + + +++
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 104 bits (261), Expect = 8e-25
Identities = 40/290 (13%), Positives = 82/290 (28%), Gaps = 37/290 (12%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
VI + ++ + +S+ D I +G C A
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKIN 205
Query: 64 HGTDETNCVVIVESEEES--KEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKS 119
+ ++ ++V L G++ + I
Sbjct: 206 DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI--------- 256
Query: 120 SYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS----------- 168
+ + Q L + + + + T ++ + +D
Sbjct: 257 ---DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313
Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228
++ ST + P + + G+ + + A G P P + W KNG
Sbjct: 314 MTKKNSTFVRVHEKP----FVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGI 369
Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
PL S++ + + L I EV D G Y TN + + ++
Sbjct: 370 PLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Score = 92.5 bits (229), Expect = 1e-20
Identities = 53/373 (14%), Positives = 93/373 (24%), Gaps = 93/373 (24%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYK-------GNRELSKRDYSMS----YSDGVV 41
+ I++ VG + + + +++L RD +
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 290
Query: 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKEQQELAHNFLYSGDRKYI 100
++ I D G Y C A++ T + + V V E + + G+R I
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 101 EKHIR--PAPAI--------ITTRQEIKSSY-----SSHTDDTGRTTTQMSTLSSNYS-S 144
P P I + + IK+ + DTG NY+
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTG-----------NYTVI 399
Query: 145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDD- 203
TN + + + PPQ K +D
Sbjct: 400 LTNPISKEKQSHVVSL------------------------VVYVPPQIGEKSLISPVDSY 435
Query: 204 --GQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 260
G L+ V P P + W + ++ + + +G
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495
Query: 261 VCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 320
+ N L + +Y C A N +G
Sbjct: 496 KIE-----------------VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 321 AETKCKLTVRSTP 333
E V P
Sbjct: 539 GERVISFHVTRGP 551
Score = 88.3 bits (218), Expect = 3e-19
Identities = 24/200 (12%), Positives = 48/200 (24%), Gaps = 50/200 (25%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKY 240
P ++ P+ + + TI L ++ +G + W N + +
Sbjct: 24 LPSVSLDLPRLSIQKDILTIKANTTLQIT--CRGQRDLDWLWPNNQSGSEQRVEVTECSD 81
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAET--------------------------- 273
+L I +V D G Y C + +
Sbjct: 82 GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITEN 141
Query: 274 -------KCKLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCT 313
C + N + L +Y I G+ C
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE 201
Query: 314 ATNSLGTAETKCKLTVRSTP 333
A + + ++ + V
Sbjct: 202 AKINDESYQSIMYIVVVVGY 221
Score = 75.6 bits (185), Expect = 5e-15
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+G + PPP + W+K N L + D + DG ++ I + ED G
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 56 YKCVATNKHGTDETNCVVIVESEEE--SKEQQELAHNF 91
Y C A + G + I+E +E + E+ H+
Sbjct: 735 YTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHHH 772
Score = 62.1 bits (150), Expect = 9e-11
Identities = 12/124 (9%), Positives = 25/124 (20%), Gaps = 39/124 (31%)
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTP----------------------------- 279
+Q +++C T + L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 280 ----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+ + +L I +V D G Y C + + +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 330 RSTP 333
+P
Sbjct: 121 YRSP 124
Score = 59.8 bits (144), Expect = 5e-10
Identities = 27/277 (9%), Positives = 69/277 (24%), Gaps = 44/277 (15%)
Query: 50 PEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPA 109
+ CV T + + + K+ + + I +
Sbjct: 6 LLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIK-----ANTTLQITCRGQRDLD 60
Query: 110 IITTRQEIKSSYSSH-TDDTGRTTTQMSTLSS-------NYS-SSTNNATSPSKKITRRM 160
+ + S T+ + + T+ Y + +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY--- 117
Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP- 219
+ D SP + + + T + + + + +
Sbjct: 118 --VQDYRSPF----------------IASVSDQHGVVYITENKNKTVVIPCLGSISNLNV 159
Query: 220 -RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + + N + K G I G+ C A + + ++ +
Sbjct: 160 SLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Query: 279 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 315
+ I D+ ++ E+ ++ V CTA
Sbjct: 217 VVVGYRIYDVV----LSPSHGIELSVGEKLVLNCTAR 249
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 120 bits (302), Expect = 6e-34
Identities = 25/96 (26%), Positives = 37/96 (38%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
P T P+ ++ + GQ V+ P V W NG L S+ + +
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
GV +L+I + +D G Y TN G A L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 95.8 bits (239), Expect = 1e-24
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG 54
+V G KP VKWY EL + + + GV+++EI+DC +DSG
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSG 77
Query: 55 EYKCVATNKHGTDETNCVVIVESEE 79
Y+ V TN G + V +
Sbjct: 78 TYRAVCTNYKGEASDYATLDVTGGD 102
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 119 bits (301), Expect = 7e-34
Identities = 27/91 (29%), Positives = 39/91 (42%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ P L D T+ + G+P P WTK+G+ + L G L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+I + D G+Y CT NS G+ + CKLT
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 84.3 bits (209), Expect = 1e-20
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
+P PT W K + + Y +S G +EI DSG Y C N G+ ++C
Sbjct: 33 EPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92
Query: 72 VVIVES 77
+ +++
Sbjct: 93 KLTIKA 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 116 bits (293), Expect = 1e-32
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
P F++ L D + +GQ L V+G P PR++W NGQP+ + + G
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAG 62
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
VA L IQ+ PED G Y C A N+LG +T
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 76.6 bits (189), Expect = 8e-18
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P + W + + + + GV + I D PED G Y C+A N G +
Sbjct: 38 TPVPRITWLLNGQPI--QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAW 95
Query: 73 VIV 75
V V
Sbjct: 96 VTV 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 116 bits (292), Expect = 2e-32
Identities = 31/96 (32%), Positives = 39/96 (40%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
+PP F + G +L VV G+P P V W K GQ L +S L
Sbjct: 7 SGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L + P D GVYVC A N+ G A +T
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 81.3 bits (201), Expect = 2e-19
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG 54
++V G+ +PPP V W KG ++L+ S + + P D+G
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 82
Query: 55 EYKCVATNKHGTDETNCVVIVE 76
Y C A N G V V
Sbjct: 83 VYVCRARNAAGEAYAAAAVTVL 104
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 115 bits (290), Expect = 3e-32
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVAS 246
PP F L D+++ +GQ + +S V+G+P+P VSW +N QP+ + + G+
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L+I D G Y C A N G + + +L
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 86.2 bits (214), Expect = 3e-21
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+P P V W + + + +R ++ G+ + I+ + D+G Y C A N++G +
Sbjct: 32 EPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE 91
Query: 71 CVVIVESE 78
+ V E
Sbjct: 92 ARLEVRGE 99
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 121 bits (305), Expect = 3e-32
Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 41/205 (20%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
+ ++ P K ++ + + G+P+P ++W K+ P
Sbjct: 89 EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP 148
Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-------------- 275
++ S + +LQI+ D+G Y C ATNS G +
Sbjct: 149 VDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRF 208
Query: 276 KLTPLNSS----NILDLK-------------YKNG----------VASLQIQEVFPEDEG 308
+ P++ +++ + V ++ +D
Sbjct: 209 SILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSA 268
Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
Y C A +SLG E ++TV+S P
Sbjct: 269 NYTCVAMSSLGVIEAVAQITVKSLP 293
Score = 114 bits (287), Expect = 1e-29
Identities = 55/221 (24%), Positives = 79/221 (35%), Gaps = 66/221 (29%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
+T PP+F + D+ G GDP+PRV+W K G+ +NS +++ ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
A L+IQ + P DE VY C A NS+G KLT
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 279 ---------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV 311
P++ S + +LQI+ D+G Y
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 312 CTATNSLGTAETK-CKLTVRSTPAANLGKSPSKESDKAPRF 351
C ATNS G + L VR + APRF
Sbjct: 181 CVATNSAGVRYSSPANLYVR-------------VQNVAPRF 208
Score = 62.9 bits (153), Expect = 3e-11
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
++ G P P VKW +G +L+ D M V + +DS
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-MPVGRNV----LELTDVKDSAN 269
Query: 56 YKCVATNKHGTDETNCVVIVES 77
Y CVA + G E + V+S
Sbjct: 270 YTCVAMSSLGVIEAVAQITVKS 291
Score = 61.8 bits (150), Expect = 5e-11
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTDETN 70
P P V W K +++ S+R ++ + + ++ I P D Y+CVA N G +
Sbjct: 34 PKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH 93
Query: 71 CVVIVESEEESKE 83
+ V E++
Sbjct: 94 AKLTVLREDQLPS 106
Score = 56.8 bits (137), Expect = 2e-09
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 13 KPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P P + W+K + +++I + D G+Y+CVATN G +
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 115 bits (290), Expect = 4e-32
Identities = 25/90 (27%), Positives = 39/90 (43%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
+ K T+ +G+ S G+P P V+W + GQ L++S + ++ +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I V DEG Y NS G E + LT
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 82.0 bits (203), Expect = 1e-19
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
+ V G + +P PTV W + + L + + ++ + + EI + D G
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 83
Query: 55 EYKCVATNKHGTDETNCVVIVE 76
Y V N G E + ++
Sbjct: 84 NYSVVVENSEGKQEAEFTLTIQ 105
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 114 bits (287), Expect = 1e-31
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P L ++T G+ +++S G+P P++ W K+ + L + + K+G +L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I+ V EDEG+Y C A + LG A+ +
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 74.7 bits (184), Expect = 6e-17
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+G + PPP + W+K N L D + DG ++ I + ED G
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKDGNRNLTIRRVRKEDEGL 78
Query: 56 YKCVATNKHGTDETNCVVIVESEEE 80
Y C A + G + I+E +E
Sbjct: 79 YTCQACSVLGCAKVEAFFIIEGAQE 103
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 124 bits (311), Expect = 1e-31
Identities = 43/367 (11%), Positives = 94/367 (25%), Gaps = 73/367 (19%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
+ W + L+ + + + GVVSM I+ +GEY ++ V
Sbjct: 76 GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 74 IVESEEESKEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKSSYSSHTDDTGRT 131
+ + ++ F ++ + P P + + +
Sbjct: 136 SIRNTLLYTLRRP---YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192
Query: 132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ 191
+ + A + + R+ +I +P P +
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ---------TTLPQLFLKV-- 241
Query: 192 FANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG------V 244
G+ L + V + ++W + L N ++ + +
Sbjct: 242 ------------GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET-----KCKLTPLNSSNILDLK---------- 289
+ V D G Y C+++ + K + NSS ++
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 290 -----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326
+ + S+ G Y+ A N
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409
Query: 327 LTVRSTP 333
L +R P
Sbjct: 410 LNIRRKP 416
Score = 114 bits (287), Expect = 2e-28
Identities = 59/385 (15%), Positives = 98/385 (25%), Gaps = 98/385 (25%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+ P P V+W + + S VV E + +C A N+ G + T
Sbjct: 164 ESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220
Query: 71 CVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPAII----TTRQEIKSSYSS 123
I ++ Q L FL G+ +I H+ + E + +
Sbjct: 221 LFTIDLNQ---TPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM 277
Query: 124 HTDDTGRTTTQMSTL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
T T RT ++ + Y+ S++ S+S
Sbjct: 278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK---------------------HPSQS 316
Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
++ T D ID + S K P+ R +WT + +
Sbjct: 317 ALVTIVEKGFINATNSS-----EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE---------------------- 272
K + S+ G Y+ A N
Sbjct: 372 ----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427
Query: 273 --------------TKCKLTPLNSSNILDLKYKNGVAS----------LQIQEVFPEDEG 308
KC N + + N A+ +
Sbjct: 428 SCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGF 487
Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
+ C A NSLGT+ L
Sbjct: 488 LVKCCAYNSLGTSCETILLNSPGPF 512
Score = 79.4 bits (195), Expect = 2e-16
Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 40/199 (20%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
+ +D + L +V W LN DL GV S+
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------PLNSSNIL------- 286
I ++ G Y+ + ++ + + + L
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESV 166
Query: 287 ----------------DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 329
+ V + + + C A N LG T+ + +
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL 226
Query: 330 RSTPAANLGKSPSKESDKA 348
TP L + K +
Sbjct: 227 NQTPQTTLPQLFLKVGEPL 245
Score = 75.1 bits (184), Expect = 5e-15
Identities = 38/299 (12%), Positives = 72/299 (24%), Gaps = 61/299 (20%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSME------IIDCKPEDSGEY 56
I+ K + W N+ L + + MS +M + D+G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 57 KCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR 114
C ++ +V + ++ + + + P T
Sbjct: 306 TCSSSKHPSQSALVTIVEKGFINATNSSEDYE---IDQYEEFCFSVRFKAYPQIRCTWTF 362
Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSS---NYS-SSTNNATSPSKKITRRMNSILDTDSPS 170
D G + ++ Y + N+
Sbjct: 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ------------------- 403
Query: 171 RSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL 230
+ L + PQ + + C G P P +W K
Sbjct: 404 --FTKMFTLNI-----RRKPQVLAEASASQA---SC-----FSDGYPLPSWTWKKCSDKS 448
Query: 231 NSSNILDLK-----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + + V+S + + C A NSLGT+ L
Sbjct: 449 PNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 71.7 bits (175), Expect = 6e-14
Identities = 40/366 (10%), Positives = 82/366 (22%), Gaps = 98/366 (26%)
Query: 35 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYS 94
+++ + D S Y V+ + + E+ + +
Sbjct: 9 VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE------VDV 62
Query: 95 GDRKYIE--KHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSS------- 145
++ + + + + H D R M L + +
Sbjct: 63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFI 122
Query: 146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
+ AT+ I + K+ ++
Sbjct: 123 QSEATN--------------------YTILFTVSIRNTLLYTLRRPYFRKMENQDA---- 158
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 265
L + + PEP V W S + V + + + C A
Sbjct: 159 ---LVCISESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCAR 211
Query: 266 NSLGTAETK----------------------------CKLT---------------PLNS 282
N LG T+ CK L
Sbjct: 212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Query: 283 SNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN 336
N ++ + + + V D G Y C+++ + +T+ N
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGFIN 328
Query: 337 LGKSPS 342
S
Sbjct: 329 ATNSSE 334
Score = 50.5 bits (120), Expect = 4e-07
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 12/90 (13%)
Query: 14 PPPTVKWYKGNRELS------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
P P+ W K + + ++ + V S + + KC A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNF 91
N GT ++ + H+
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKHHH 524
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 113 bits (286), Expect = 1e-31
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGV 244
AM PP+F + +ID+G+ + V G P P VSW NG+ + S ++ + + G+
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SL + V D G Y C A N G A +L
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 80.8 bits (200), Expect = 3e-19
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P P V WY R + S + M S G+ S+ + D+G Y CVA N+ G
Sbjct: 32 LPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91
Query: 71 CVVIVESEE 79
+ V ++E
Sbjct: 92 VQLDVLAKE 100
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 112 bits (283), Expect = 3e-31
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGV 244
+M P+ ++ +T+ G V G P+P W KNG + S I ++ V
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I++V ED + A N G + L
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 86.2 bits (214), Expect = 3e-21
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
KP P +WYK ++ S R Y D V + I D EDS A N G ++
Sbjct: 32 KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH 91
Query: 71 CVVIVESE 78
++V+++
Sbjct: 92 AFLLVQAK 99
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 115 bits (290), Expect = 4e-31
Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 51/188 (27%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
Q L+ + G+ + G+PE + G+ + S+ + ++ + + L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETK------------------------------CKLT 278
I ED G+Y C AT++ G + C+++
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 121
Query: 279 --------------PLNSSNILDLKYK---NGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
+ + + D ++ N +LQI + DEG+Y C
Sbjct: 122 SSPAPAVSWLYHNEEVTTIS--DNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGE 177
Query: 322 ETKCKLTV 329
+ V
Sbjct: 178 IDFRDIIV 185
Score = 62.9 bits (153), Expect = 6e-12
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
+++ VG + +P + ++ S + + + I + ED+G
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 71
Query: 55 EYKCVATNKHGTDETNCVVIV 75
Y+C AT+ G + VV+
Sbjct: 72 IYRCQATDAKGQTQEATVVLE 92
Score = 61.0 bits (148), Expect = 3e-11
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDS 53
+ K G P P V W N E+ + ++ +++I++ D
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDE 163
Query: 54 GEYKCVATNKHGTDETNCVVIVE 76
G Y+C + + +IV
Sbjct: 164 GIYRCEGRVEARGEIDFRDIIVI 186
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 111 bits (280), Expect = 1e-30
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYK 241
++ P F D T+ +G+ + V G P P +SW +G+P+ S L +
Sbjct: 3 SGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
NGV SL I+ V D G+Y C ATN G +L
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 77.0 bits (190), Expect = 1e-17
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDS 53
+ V+ G P P + W + + + +GV S+ I D+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 54 GEYKCVATNKHGTDETNCVVIVESEEES 81
G Y C+ATN+ G + + ++V ++E
Sbjct: 79 GIYTCIATNRAGQNSFSLELVVAAKESG 106
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 114 bits (286), Expect = 2e-30
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 51/193 (26%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
+M K + T + G+ + S G PEP +SW +NG+ + + K
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNT 58
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
L ++ + D G YVC ATN G E + L
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDA 118
Query: 279 ------------------PLNSSNILDLKY----KNGVASLQIQEVFPEDEGVYVCTATN 316
LD + ++G +SL I++V D G Y C A +
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 317 SLGTAETKCKLTV 329
+G + L +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 66.0 bits (161), Expect = 4e-13
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG 54
+ G P P + W++ + + + Y + S+ + + + D G
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGG 71
Query: 55 EYKCVATNKHGTDETNCVVIV 75
Y C ATNK G DE + V
Sbjct: 72 PYVCRATNKAGEDEKQAFLQV 92
Score = 61.8 bits (150), Expect = 2e-11
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 13 KPPPTVKWYKG--------NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
+P P + W + + + G S+ I D K DSG Y C A ++
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 65 GTDETNCVVIVE 76
G + + + +E
Sbjct: 181 GGHQKSMYLDIE 192
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 111 bits (279), Expect = 2e-30
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYK 241
+ P F KL I +G + + V G+P+P++ W K+G+ ++ + +
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+G SL +D+G Y A N G +L
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 79.7 bits (197), Expect = 1e-18
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 13 KPPPTVKWYKGNRELSKRD--YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P P + W+K +++S + Y++ DG S+ +D G Y +A N G
Sbjct: 35 NPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISC 94
Query: 70 NCVVIVESEEES 81
++V++
Sbjct: 95 TGRLMVQAVNSG 106
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 112 bits (282), Expect = 2e-30
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 168 SPSRSRSTTKELIMPPD-TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
+ ++ + L + P F + D + +G V+G P+P V W K+
Sbjct: 19 NANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD 78
Query: 227 GQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
P+ S + Y + G SL I EV +D+ Y C A NSLG A +L
Sbjct: 79 DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 78.0 bits (192), Expect = 1e-17
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 13 KPPPTVKWYKGNRELSK-RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P P V W+K + + + R + + Y +G S+ I + +D +Y C A N G
Sbjct: 68 YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
Query: 71 CVVIVESEEESKEQQE 86
++VE+ + E +
Sbjct: 128 AELLVETMGKEGEGEG 143
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 120 bits (303), Expect = 2e-30
Identities = 54/373 (14%), Positives = 109/373 (29%), Gaps = 81/373 (21%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
++ + + T W+ N+ L + S+ ++ ++ D G Y+C
Sbjct: 304 EDAVALTCEPEIQNTTYLWWVNNQSLPVSP-RLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKS 119
N+ D ++ V++ ++ + G + H P
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQ 422
Query: 120 SYSSH-------TDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSR 171
++ ++G Y+ + N+A+
Sbjct: 423 QHTQELFISNITEKNSG-----------LYTCQANNSASG-------------------H 452
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
SR+T K + + + P + K ++D + + + W NGQ L
Sbjct: 453 SRTTVKTITVSAEL---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLP 508
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC---------KLTPLNS 282
S L L N +L + V D YVC NS+ + ++
Sbjct: 509 VSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566
Query: 283 SNI-------LDLK-------------YKNGV-----ASLQIQEVFPEDEGVYVCTATNS 317
+ L+L NG+ L I ++ P + G Y C +N
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNL 626
Query: 318 LGTAETKCKLTVR 330
++
Sbjct: 627 ATGRNNSIVKSIT 639
Score = 119 bits (300), Expect = 6e-30
Identities = 54/365 (14%), Positives = 98/365 (26%), Gaps = 81/365 (22%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
T W+ N+ L + S+G ++ + + D+ YKC N ++ V+
Sbjct: 138 QDATYLWWVNNQSLPV-SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196
Query: 74 IVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSH------- 124
+ + SG+ + H P +
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNIT 256
Query: 125 TDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP 183
+++G +Y+ + N+ T + R+ TT + P
Sbjct: 257 VNNSG-----------SYTCQAHNSDTGLN-----------------RTTVTTITVYAEP 288
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
++D + L+ + W N Q L S L+ N
Sbjct: 289 PKPFITSN-----NSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP--RLQLSND 340
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL----------------TPLNSSNILD 287
+L + V D G Y C N L + + T L
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLS 400
Query: 288 LK-------------YKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
L +G L I + ++ G+Y C A NS T+
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Query: 330 RSTPA 334
+
Sbjct: 461 TVSAE 465
Score = 113 bits (284), Expect = 8e-28
Identities = 62/376 (16%), Positives = 90/376 (23%), Gaps = 103/376 (27%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNC 71
PP W+ S + I + +SG Y C A N T
Sbjct: 231 PPAQYSWFVNGTFQQ--------STQ--ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
Query: 72 VVIVESEEESKEQQELAHNFLYSGDRKYIE-KHIRPAPAIITTR--QEIKSSYSSHTDDT 128
+ V +E N + D + + + Q + S +
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND 340
Query: 129 GRTTTQMSTLSS---NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD 184
RT T +S + Y N S S ++ PD
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNEL------------------SVDHSDPVILNVLYGPD 382
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
P G L LS +P + SW +G +
Sbjct: 383 DPTISPS------YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------- 426
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT-------------------------- 278
L I + ++ G+Y C A NS T
Sbjct: 427 -ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAV 485
Query: 279 --------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 318
L S L L N +L + V D YVC NS+
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSV 543
Query: 319 GTAETKC-KLTVRSTP 333
+ L V P
Sbjct: 544 SANRSDPVTLDVLYGP 559
Score = 106 bits (266), Expect = 2e-25
Identities = 66/390 (16%), Positives = 94/390 (24%), Gaps = 103/390 (26%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVV-----------------SMEIIDCKPEDSGE 55
+ WYKG R R S+ I + D+G
Sbjct: 26 QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF 85
Query: 56 YKCVATNKHGTDETNCVVIVESEEESK-EQQELAHNFLYSGDRKYIEKHIRPAPAIITTR 114
Y +E E K + D A
Sbjct: 86 YTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWW 145
Query: 115 ---QEIKSSYSSHTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDS 168
Q + S + RT T + + +Y T N S
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP-----------------VS 188
Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228
RS S ++ PD P + + G+ L+LS +P + SW NG
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPL------NTSYRSGENLNLSCHAASNPPAQYSWFVNGT 242
Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
S+ L I + + G Y C A NS T
Sbjct: 243 FQQSTQ-----------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
Query: 279 ---PLNSSNILD-------------------------------LKYKNGVASLQIQEVFP 304
NS+ + D L+ N +L + V
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTR 351
Query: 305 EDEGVYVCTATNSLGTAETKC-KLTVRSTP 333
D G Y C N L + L V P
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGP 381
Score = 63.4 bits (154), Expect = 3e-11
Identities = 31/192 (16%), Positives = 43/192 (22%), Gaps = 64/192 (33%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV----------------ASL 247
G+ + L SW K + + I+ ASL
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAET--------------------------------KC 275
IQ + D G Y S E C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 276 KLT-------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
+ L S L+ NG +L + V D Y C N +
Sbjct: 134 EPETQDATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR 191
Query: 323 TK-CKLTVRSTP 333
+ L V P
Sbjct: 192 SDSVILNVLYGP 203
Score = 53.4 bits (128), Expect = 6e-08
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 1 MQNVIKVKVGST--------KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPE 51
N V+ T W+ + L +S + ++ + +
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRN 530
Query: 52 DSGEYKCVATNKHGTDETNCV 72
D+ Y C N + ++ V
Sbjct: 531 DARAYVCGIQNSVSANRSDPV 551
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 110 bits (277), Expect = 3e-30
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVA 245
PP+ +D +ID+G+ L ++ G+P P V+W+ G+ ++S +N +
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L I +V +D G+Y + N G+ +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 81.6 bits (202), Expect = 1e-19
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKP 50
+ I + G +P P V W G R++ + + + +D + ++ I+D +
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 51 EDSGEYKCVATNKHGTDETNCVVIVES 77
+D G Y N+ G+D + + S
Sbjct: 73 QDGGLYTLSLGNEFGSDSATVNIHIRS 99
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 112 bits (283), Expect = 6e-30
Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 52/202 (25%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYK 241
+T PP+ K ++ + G +GDP P + W KNG+ ++ + L+
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 242 NGVASLQIQEVF-PEDEGVYVCTATNSLGTA-ETKCKLTPLNSSNILDLK---------- 289
G++ L+I+ V D+ Y C A N +G A LT
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 290 ------------------------YKNGVA-------------SLQIQEVFPEDEGVYVC 312
KN LQI+ ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 313 TATNSLGTAETKC-KLTVRSTP 333
A NS+GT +K L V+
Sbjct: 181 VAENSMGTEHSKATNLYVKVRR 202
Score = 91.0 bits (226), Expect = 8e-22
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
+ S T + T P + I+ G + ++ G+P P + W KN
Sbjct: 91 AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK 150
Query: 230 LNSSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
++ SN L +G LQI+ ED+G Y C A NS+GT +K
Sbjct: 151 VDMSNPRYSLK----DG--FLQIENSREEDQGKYECVAENSMGTEHSKA 193
Score = 63.7 bits (155), Expect = 5e-12
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
++VG T P P + W K ++ + S DG ++I + + ED G+
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG--FLQIENSREEDQGK 177
Query: 56 YKCVATNKHGTDETNCVVIV 75
Y+CVA N GT+ + +
Sbjct: 178 YECVAENSMGTEHSKATNLY 197
Score = 56.3 bits (136), Expect = 2e-09
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 13 KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTD- 67
PPP++ W K +++S Y++ G +S+ I+ D Y+CVA N G
Sbjct: 33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
Query: 68 ETNCVVIVESEEESKEQ 84
+ + + +++
Sbjct: 93 SADATLTIYEGDKTPAG 109
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 111 bits (280), Expect = 1e-29
Identities = 47/184 (25%), Positives = 61/184 (33%), Gaps = 43/184 (23%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P L + V+ P+P +SWT+N + + +NG L
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-QLLT 65
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKC-----------------KLTPLNSSNILDLK-- 289
I V D+G+Y CTA N +G A C +L
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 290 ---------YKNGVA-------------SLQIQEVFPEDEGVYVCTATNSLGTAETKC-K 326
K A SL+I V ED G Y C A NSLGTA +K K
Sbjct: 126 GNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVK 185
Query: 327 LTVR 330
L V
Sbjct: 186 LEVE 189
Score = 62.4 bits (152), Expect = 8e-12
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+K+ G P P+V W KG+ L + G S+ I + + ED+G+
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG--SLRIHNVQKEDAGQ 167
Query: 56 YKCVATNKHGTDETNCV 72
Y+CVA N GT + V
Sbjct: 168 YRCVAKNSLGTAYSKLV 184
Score = 62.1 bits (151), Expect = 1e-11
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P + W + + D S + + I+ + D G Y C A N G +C
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 73 VIV 75
+
Sbjct: 94 ALQ 96
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 114 bits (286), Expect = 2e-29
Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 51/198 (25%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVAS 246
P F +L + + L V G P+P V W + G+ + + ++K G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
L I V +D VY ATN G+ L
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 279 --------------------PLNSSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNS 317
++++ + S + V +D G YV A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 318 LGTAETKCKLTVRSTPAA 335
G + +L V P
Sbjct: 184 FGIDQKTVELDVADVPDP 201
Score = 84.0 bits (208), Expect = 2e-18
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
S S T L + + P+ + G+ + + G P+P ++W K ++
Sbjct: 87 SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146
Query: 232 SSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ + S + V +D G YV A N G + +L
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 67.5 bits (165), Expect = 7e-13
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P P VKWY+ +E+ Y + G + I +D+ Y+ ATN+ G+
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91
Query: 71 CVVIVE 76
+ VE
Sbjct: 92 ASLEVE 97
Score = 65.9 bits (161), Expect = 3e-12
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDC-KPE 51
+ G KP P + W KG + + Y + + S+ + + +
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 52 DSGEYKCVATNKHGTDETNCVVIV 75
D+G Y A N+ G D+ + V
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDV 195
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 112 bits (281), Expect = 9e-29
Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 56/199 (28%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--- 241
F ++ + G+ ++ V P P VSW + + + + + D ++
Sbjct: 94 EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--DNRFAMLA 151
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLG-------------------------------- 269
N +LQI + DEG+Y C
Sbjct: 152 NN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 209
Query: 270 -TAETKCKLT--------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 314
C+ + + + LK N L ++ + D G YVC A
Sbjct: 210 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRA 267
Query: 315 TNSLGTAETKCKLTVRSTP 333
TN G E + L V
Sbjct: 268 TNKAGEDEKQAFLQVFVQH 286
Score = 104 bits (262), Expect = 4e-26
Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 44/192 (22%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
+M Q L+ + G+ + G+PE + G+ + S+ + ++ + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-----------KLTPLNSS----NILDLK- 289
L I ED G+Y C AT++ G + + ++
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 290 ------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATN-SLGTA 321
+ +LQI + DEG+Y C + G
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEI 180
Query: 322 ETKCKLTVRSTP 333
+ + + + + P
Sbjct: 181 DFRDIIVIVNVP 192
Score = 90.3 bits (224), Expect = 8e-21
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
R + +PP K + T + G+ + S G PEP +SW +NG+ +
Sbjct: 182 FRDIIVIVNVPPA-----ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ LK N L ++ + D G YVC ATN G E + L
Sbjct: 237 ENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 66.4 bits (162), Expect = 2e-12
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 13 KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P P + W++ + + + Y + S+ + + + D G Y C ATNK G DE
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 72 VVIVESEEESKEQQ 85
+ V +
Sbjct: 279 FLQVF-VQHHHHHH 291
Score = 57.9 bits (140), Expect = 8e-10
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 15 PPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P ++ WY E S + + + I + ED+G Y+C AT+ G + V
Sbjct: 32 PESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 91
Query: 73 VIV 75
V+
Sbjct: 92 VLE 94
Score = 55.2 bits (133), Expect = 7e-09
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+ K G P P V W N E++ + +++I++ D G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 56 YKCVATNK-HGTDETNCVVIV 75
Y+C + G + ++++
Sbjct: 168 YRCEGRVEARGEIDFRDIIVI 188
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 105 bits (265), Expect = 2e-28
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
P F K K + +G + L + P P++ W +N + + + I + G +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I++V +D G Y +A N G +L
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 76.3 bits (188), Expect = 2e-17
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPED 52
KV G + PPP + W + N + + R + G V++ I D +D
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 53 SGEYKCVATNKHGTDETNCVVIVES 77
+G Y A N+ G N + V +
Sbjct: 85 AGWYTVSAVNEAGVTTCNTRLDVTA 109
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 107 bits (270), Expect = 3e-28
Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 52/190 (27%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
+ F ++ + G+ ++ V P P VSW + + + + + D ++ N
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--DNRFAMLANN- 57
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT-----------PLNSSNILDLK---- 289
+LQI + DEG+Y C + P S N +
Sbjct: 58 -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116
Query: 290 ----------------YKNGVA--------------SLQIQEVFPEDEGVYVCTATNSLG 319
++NG L ++ + D G YVC ATN G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Query: 320 TAETKCKLTV 329
E + L V
Sbjct: 177 EDEKQAFLQV 186
Score = 90.6 bits (225), Expect = 6e-22
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
R + +PP K + T + G+ + S G PEP +SW +NG+
Sbjct: 84 IDFRDIIVIVNVPP-----AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138
Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + LK N L ++ + D G YVC ATN G E + L
Sbjct: 139 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 64.0 bits (156), Expect = 2e-12
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P P + W++ + + Y + S+ + + + D G Y C ATNK G DE
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQA 182
Query: 72 VVIV 75
+ V
Sbjct: 183 FLQV 186
Score = 52.1 bits (125), Expect = 3e-08
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P V W N E++ + +++I++ D G Y+C + +
Sbjct: 29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88
Query: 73 VIVE 76
+IV
Sbjct: 89 IIVI 92
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 106 bits (267), Expect = 1e-27
Identities = 25/203 (12%), Positives = 50/203 (24%), Gaps = 63/203 (31%)
Query: 190 PQFANKLTDKTIDDG-QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVAS 246
F I + Q K +V++ N + + + G+
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----------------- 289
+ ++++ EDEG Y + T + L +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 290 -----------------------------YKNG--------------VASLQIQEVFPED 306
YK+ + +L I E +D
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 182
Query: 307 EGVYVCTATNSLGTAETKCKLTV 329
G+Y + G +++ KL
Sbjct: 183 AGIYEVILKDDRGKDKSRLKLVD 205
Score = 91.2 bits (226), Expect = 7e-22
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 162 SILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPR 220
+++ + E P F L + + L V E
Sbjct: 90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETH 148
Query: 221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ W K+ + ++ D K +G+ +L I E +D G+Y + G +++ KL
Sbjct: 149 IVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
Score = 81.9 bits (202), Expect = 1e-18
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++K KV + K + WYK RE+ D + DG+ ++ I + +D+G Y+ + +
Sbjct: 135 LLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 193
Query: 64 HGTDETNCVVIVES 77
G D++ ++ E+
Sbjct: 194 RGKDKSRLKLVDEA 207
Score = 74.6 bits (183), Expect = 7e-16
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSD--GVVSMEIIDCKPEDSGEYKC 58
Q ++ V + +E+ Y M G++ M + + ED G Y
Sbjct: 19 QVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF 78
Query: 59 VATNKHGTDETNCVVIVESEEESKEQQEL 87
+ T+ + V++ + ++ +++ E
Sbjct: 79 QLQDGKATNHSTVVLVGDVFKKLQKEAEF 107
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 109 bits (273), Expect = 2e-27
Identities = 49/307 (15%), Positives = 84/307 (27%), Gaps = 49/307 (15%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
P W K L + G +++++ EDSG Y C
Sbjct: 31 PPPGGGPMGPTVWVKDGTGLVPSER---VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVL 87
Query: 68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDD 127
V + ++ ++ D AP + K + +
Sbjct: 88 CHFSVRVTDAPSSGDDEDGE--------DEAEDTGVDTGAPYWTRPERMDKKLLAVPAAN 139
Query: 128 T--------GRTTTQMS------TLSSNYSSSTNNATSPSKKITRRMNSILDTDS----- 168
T G T +S ++ + M S++ +D
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRG--EHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 169 ----PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT 224
S T L + + P A ++T G ++ V D +P + W
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 225 KNGQPLNSSNILDLKY-------------KNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
K+ + S D + L + V ED G Y C A NS+G +
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS 317
Query: 272 ETKCKLT 278
L
Sbjct: 318 HHSAWLV 324
Score = 78.1 bits (192), Expect = 2e-16
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 5/118 (4%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
P + G ++LS G P W K+G L S + G L
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE----RVLVGPQRL 63
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPE 305
Q+ ED G Y C + S+ D ++ + P
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Score = 71.6 bits (175), Expect = 4e-14
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 4 VIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPED 52
++ V +T P P++ W K RE R + S+ + P D
Sbjct: 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSD 191
Query: 53 SGEYKCVATNKHGTDETNCVVIVESEEESK 82
G Y CV NK G+ + V +
Sbjct: 192 RGNYTCVVENKFGSIRQTYTLDVLERSPHR 221
Score = 56.5 bits (136), Expect = 4e-09
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 24/103 (23%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRE--------------LSKRDYSMSYSDGVV 41
+GS P ++W K + K + + +
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKE 83
+ + + ED+GEY C+A N G + ++V +EEE E
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 102 bits (256), Expect = 3e-27
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
+ ++ ++G + ++ + +V+W + L +S ++ Y++GVA L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++++ D+G Y C N G + +L
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 88.1 bits (219), Expect = 6e-22
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
K+ + V WY G R+L Y ++Y DGV + + D D G Y+C N
Sbjct: 20 KYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79
Query: 63 KHGTDETNCVVIVESEEE 80
+G D + + V+ E
Sbjct: 80 DYGEDSSYAELFVKGVRE 97
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 102 bits (257), Expect = 3e-27
Identities = 20/95 (21%), Positives = 37/95 (38%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+ + PQ D+ + G+ ++L V G +W K + + S + ++
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ L I E G Y N LG+ + + LT
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 82.0 bits (203), Expect = 2e-19
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
KV+ G + P T W K +++ + S+ + I+ + E G
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG 76
Query: 55 EYKCVATNKHGTDETNCVVIVE 76
Y + NK G+ + + V
Sbjct: 77 CYTLLVENKLGSRQAQVNLTVV 98
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 108 bits (271), Expect = 3e-27
Identities = 45/301 (14%), Positives = 78/301 (25%), Gaps = 53/301 (17%)
Query: 11 STKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
S P + W+K + + + M DG ++ ++ EDSG Y C N D
Sbjct: 50 SVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCD 107
Query: 68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI-------RPAPAIITTR--QEIK 118
+ + + V ++ L + + I + +
Sbjct: 108 KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD 167
Query: 119 SSYSSHTDDTGRTTTQMSTLSS----NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSR 173
G T + ++ Y T ITR
Sbjct: 168 KDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITR--------------- 212
Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV---KGDPEPRVSWTKNGQPL 230
+ EL + T P + L + G L + V G P + W
Sbjct: 213 --SIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTH 270
Query: 231 NSSNILDLKYKNG-------------VASLQIQEVFPEDEGV-YVCTATNSLGTAETKCK 276
S + G L V ED + + C N+L +
Sbjct: 271 IESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTT 330
Query: 277 L 277
+
Sbjct: 331 V 331
Score = 91.3 bits (226), Expect = 5e-21
Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 56/226 (24%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ-----C--LDLSAVVKGDPEPRVSWT 224
+ T + A + + +G+ C + P ++W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
KN + + +L + ED G YVCT N+ + +L +++
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 285 ILDLK----------------------------------YKNGV---------------A 295
YK+ +
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSP 341
L + +V ED G Y C T + + ++ ++
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI 226
Score = 47.4 bits (112), Expect = 3e-06
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDY--------------SMSYSDGVVSMEIIDCKPE 51
KV +G+ P T+ W+ N + Y + + V + E
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308
Query: 52 DSG-EYKCVATNKHGTDETNCVV 73
D ++KCV N V
Sbjct: 309 DLHMDFKCVVHNTLSFQTLRTTV 331
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 104 bits (260), Expect = 6e-26
Identities = 34/213 (15%), Positives = 55/213 (25%), Gaps = 55/213 (25%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
T T + + F N T + +G+ + V P + W
Sbjct: 82 TAEDGTQSEATVNVKIFQ-----KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------- 278
G+ + + + LQI+ + DEG Y C +
Sbjct: 137 KGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP 195
Query: 279 ----------------------------------------PLNSSNILDLKY--KNGVAS 296
P+ + D K+ + +
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
L I+ V DE YVC A N G + L V
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 84.2 bits (208), Expect = 9e-19
Identities = 36/194 (18%), Positives = 55/194 (28%), Gaps = 49/194 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK-NGQPLNSSN--ILDLKYKNGVA 245
Q + I G+ V GD + +SW NG+ L+ + I + + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTPLNSSNILDLK--------- 289
+L I +D G+Y C T GT KL N+ + K
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 290 ------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATNSLGTAE 322
G LQI+ + DEG Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 323 TKC--KLTVRSTPA 334
++ V P
Sbjct: 183 NFKDIQVIVNVPPT 196
Score = 58.0 bits (140), Expect = 8e-10
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 13 KPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P PT+ W K + + D +SD + I + D EY C+A NK G +
Sbjct: 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 282
Query: 70 NCVVIV 75
+ + V
Sbjct: 283 SIHLKV 288
Score = 53.3 bits (128), Expect = 3e-08
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+ K G PPT+ W R++ + ++I K D G
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169
Query: 56 YKCVATNKHGTDETNCVVIVE 76
Y+C + + V
Sbjct: 170 YRCEGRILARGEINFKDIQVI 190
Score = 51.8 bits (124), Expect = 1e-07
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 8 KVGSTKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
+V + W+ N E +R + D ++ I + +D+G YKCV T +
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84
Query: 64 HGTDETNCVVIV 75
GT V +
Sbjct: 85 DGTQSEATVNVK 96
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 97.8 bits (244), Expect = 1e-25
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P+ I G +L G P+P +WT + L + K+ S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
D G Y N LG E ++
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 82.4 bits (204), Expect = 6e-20
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPED 52
IK+K G T P PT W G+ + + S+ K D
Sbjct: 10 RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRAD 69
Query: 53 SGEYKCVATNKHGTDETNCVVIVE 76
SG YK N+ G DE VIV+
Sbjct: 70 SGNYKLKVKNELGEDEAIFEVIVQ 93
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 106 bits (265), Expect = 2e-25
Identities = 47/393 (11%), Positives = 88/393 (22%), Gaps = 95/393 (24%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV- 72
+ +D M + C + + +
Sbjct: 142 EVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFI 201
Query: 73 --VIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIIT---TRQEIKSSYSSHT 125
V + A L G+ + I+ + T + K ++
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Query: 126 DDTGRTTTQ-MSTL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRST 175
G + +TL S + NN S + +T
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG------------------SANVTT 303
Query: 176 TKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSN 234
T E++ F T ++DG+ +DL + P+P W +
Sbjct: 304 TLEVVDKG----FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKW 359
Query: 235 ILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
K +N V+ L + + + G Y +NS A +
Sbjct: 360 EDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYD 419
Query: 279 ------------------------------------PLNSSNILDLKYKNG--VASLQIQ 300
P++ + G V I
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 301 EVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+ G C A N +G +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN 512
Score = 102 bits (255), Expect = 3e-24
Identities = 43/397 (10%), Positives = 101/397 (25%), Gaps = 97/397 (24%)
Query: 5 IKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
+ V+VG P VKW + + + + + ++G+Y C
Sbjct: 46 LIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWI-------TEKAEATNTGKYTCT 98
Query: 60 ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-PAPAIITTR---- 114
+ V + + + + L + + + + P + +
Sbjct: 99 NKHGLSNSIY--VFVRDPAKLFLVDRSL---YGKEDNDTLVRCPLTDPEVTNYSLKGCQG 153
Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
+ + D + + + + K + + +
Sbjct: 154 KPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK---- 209
Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS 233
P + + +G+ ++ +K +W +
Sbjct: 210 -------------AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256
Query: 234 NILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
+ + A+L I D GV++C A N+ G+A L
Sbjct: 257 EKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIF 316
Query: 279 PLNSSNI-------LDLK--------------YKNG---------------------VAS 296
P+ ++ + +DL V+
Sbjct: 317 PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
L + + + G Y +NS A + V + P
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413
Score = 87.0 bits (215), Expect = 5e-19
Identities = 43/310 (13%), Positives = 78/310 (25%), Gaps = 67/310 (21%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME------IIDCKPEDSGEYK 57
+ + W + N + ++ S+ G + E I + DSG +
Sbjct: 230 TVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289
Query: 58 CVATNKHGTDETNCVVIV-ESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR 114
C A N G+ + V + + F+ G+ + P P
Sbjct: 290 CYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349
Query: 115 ---QEIKSSYSSHTDDTGRTTT-QMSTL---------SSNYS-SSTNNATSPSKKITRRM 160
+ + + + +S L Y+ +N+ + + +
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
N T P+ T D L V G PEP
Sbjct: 410 N--------------------------TKPEIL------TYDRLVNGMLQCVAAGFPEPT 437
Query: 221 VSWTKNGQ----------PLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSL 268
+ W P++ + G V I + G C A N +
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497
Query: 269 GTAETKCKLT 278
G
Sbjct: 498 GKTSAYFNFA 507
Score = 55.8 bits (134), Expect = 8e-09
Identities = 29/190 (15%), Positives = 47/190 (24%), Gaps = 54/190 (28%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
+PP +D + G + L G V WT + N
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNEN--------KQ 79
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET--------------------------KCKLT 278
++ + G Y CT + L + +C LT
Sbjct: 80 NEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLT 139
Query: 279 PLNSSNILDLKYKNGVAS-------------LQIQEV-FPEDEGVYVCTATNSLGTAETK 324
+N LK G + I+ V C+ G +
Sbjct: 140 DPEVTNYS-LKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE-GKSVLS 197
Query: 325 CKLTVRSTPA 334
K ++ PA
Sbjct: 198 EKFILKVRPA 207
Score = 41.2 bits (96), Expect = 4e-04
Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 38/114 (33%)
Query: 255 EDEGVYVCT----ATNSLGTAETKCKLT----------------PLNSS----------- 283
++C G+++ +
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 284 ----NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
ILD +N ++ + G Y CT + L + + VR
Sbjct: 65 KWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPA 115
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 100 bits (250), Expect = 4e-25
Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 65/213 (30%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
++P + K + GQ + L G P + W K + +
Sbjct: 6 HHHHHSSGLVPR-----GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTPLNSSNIL 286
+ N + L V +D G YVC N+ ++ P + +
Sbjct: 61 NGNT---------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV 111
Query: 287 DLK--------------------------------------YKNGVA-------SLQIQE 301
D +KN + +
Sbjct: 112 DGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY 171
Query: 302 VFPEDEGVYVCTATNSLGTAETKC-KLTVRSTP 333
V E +G Y C N + ++K ++ +
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204
Score = 58.7 bits (142), Expect = 2e-10
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 6 KVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 56
K+ GST P P +W+K L+ + E G Y
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------LYMVPYVDLEHQGTY 180
Query: 57 KCVATNKHGTDETNCVVIV 75
C N + ++ V I+
Sbjct: 181 WCHVYNDRDSQDSKKVEII 199
Score = 55.7 bits (134), Expect = 3e-09
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P +W+K N+E+ + S + +D+G Y C N + +
Sbjct: 46 PFVQYQWFKMNKEIPNGNTS--------ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97
Query: 74 I 74
+
Sbjct: 98 L 98
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 99.1 bits (247), Expect = 4e-25
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 38/174 (21%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
+ T+ GQ + L+ V+G EP + W K+G + + + + + ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKC-KLT---------PLNSSNI-----LDLK-- 289
L ++ V D G Y C + T ++ LT + L
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 290 ------------YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
++ + + ++ C A N G A ++
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Score = 56.3 bits (136), Expect = 1e-09
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 14 PPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P ++W K + D +S + + + + D+G Y C + T+ +
Sbjct: 30 EEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ 89
Query: 71 CV-VIVES 77
V + VE
Sbjct: 90 PVWLTVEG 97
Score = 51.3 bits (123), Expect = 5e-08
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P T+ W++G ++ S S + S + C A N G +
Sbjct: 127 EPVTIVWWRGTTKIGGPAPSPSV--------LNVTGVTQSTMFSCEAHNLKGLASSRTAT 178
Query: 74 IV 75
+
Sbjct: 179 VH 180
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 99 bits (249), Expect = 5e-25
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 1/112 (0%)
Query: 168 SPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG 227
+ TI +G+ L+L+ V GDP P VSW KN
Sbjct: 96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 155
Query: 228 QPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ L ++ +LK+ A I V D G Y N G+ + ++
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 92.6 bits (230), Expect = 2e-22
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ A L ++ +G L S V + +V+W+ NG + S+ + L
Sbjct: 3 SIALSATDLKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
QI E P D+G YV + + L+
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92
Score = 78.4 bits (193), Expect = 3e-17
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPE 51
+V+ ++ G PPP V W K + L + + I
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184
Query: 52 DSGEYKCVATNKHGTDETNCVVIVESEE 79
DSG+Y V NK+G++ ++ V V E
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 77.2 bits (190), Expect = 9e-17
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
V V W + D + + ++I + P D G+Y +
Sbjct: 25 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 84
Query: 67 DETNCVVIVESEEESKEQQE 86
+ + ++ +E+ + +
Sbjct: 85 HQKTVDLSGQAYDEAYAEFQ 104
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 101 bits (252), Expect = 1e-24
Identities = 38/306 (12%), Positives = 78/306 (25%), Gaps = 47/306 (15%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
V + + T+ WYK + + +++ + + + K EDSG Y CV
Sbjct: 24 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVV 81
Query: 61 TNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSS 120
N E + Y + I + +
Sbjct: 82 RNSSYCLRIKISAKFVENEPNLC---------------YNAQAIFKQKLPVAGDGGLVCP 126
Query: 121 YSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS------------ 168
Y + ++ +N K + ++ +
Sbjct: 127 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Query: 169 --PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
+ + + + P + +D G + L V G W N
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWN 246
Query: 227 GQPLNSS------------NILDLKYKNGVASLQIQEVFPED-EGVYVCTATNSLGTAET 273
G ++ N + + + L I E+ + + C A N+ G
Sbjct: 247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
Query: 274 KCKLTP 279
+L
Sbjct: 307 YIQLIY 312
Score = 77.1 bits (189), Expect = 4e-16
Identities = 22/183 (12%), Positives = 37/183 (20%), Gaps = 56/183 (30%)
Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
+ + + ++W K+ S + L ED G Y C NS
Sbjct: 29 LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL 88
Query: 272 ETKCKLT----------------------------------------------------- 278
K
Sbjct: 89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK 148
Query: 279 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338
PL NI + L + V + G Y C A+ + + +
Sbjct: 149 PLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205
Query: 339 KSP 341
+
Sbjct: 206 PTR 208
Score = 49.0 bits (116), Expect = 1e-06
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 23/97 (23%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDY-------------SMSYSDG 39
++V +GS + W + + D + S
Sbjct: 216 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275
Query: 40 VVSMEIIDCKPED-SGEYKCVATNKHGTDETNCVVIV 75
+ + I + + + C A N HG D +I
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 47.8 bits (113), Expect = 2e-06
Identities = 11/54 (20%), Positives = 13/54 (24%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAP 349
L ED G Y C NS K + + K P
Sbjct: 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP 116
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 102 bits (255), Expect = 2e-24
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 52/193 (26%)
Query: 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL---NSSNILDLKYK----NGVASL 247
+L ++T + + L +G+P P ++W + LD + + +G +SL
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
I++V D G Y C A + +G + L
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVK 125
Query: 279 --------------PLNSSNILDLKYKN--GVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
L + N +LK + L+I D G Y CTATN +GT
Sbjct: 126 SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 323 TKCKLTVRSTPAA 335
+ L + P++
Sbjct: 186 QEYILALADVPSS 198
Score = 82.2 bits (203), Expect = 1e-17
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
P+F + T +G +++S VK +P + W ++ L + N +LK +
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L+I D G Y CTATN +GT + L
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
Score = 64.1 bits (156), Expect = 2e-11
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKP 50
+ G+ PP ++ W + L ++ + + +EI
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD 167
Query: 51 EDSGEYKCVATNKHGTDETNCVVIV 75
D G Y C ATN GT ++ +
Sbjct: 168 NDFGRYNCTATNHIGTRFQEYILAL 192
Score = 62.5 bits (152), Expect = 4e-11
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 13 KPPPTVKWYKGNREL--------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
+P P + W + + G S+ I D K DSG Y C A ++
Sbjct: 27 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 86
Query: 65 GTDETNCVVIVE 76
G + + + +E
Sbjct: 87 GGHQKSMYLDIE 98
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 97.6 bits (243), Expect = 2e-24
Identities = 35/194 (18%), Positives = 51/194 (26%), Gaps = 57/194 (29%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNGVA 245
P+ D + L + + WTKNG L ++
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-----KNASNM 56
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
+I + ED G Y C + + + +
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCK 115
Query: 279 ---------------------PLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATN 316
NSS + K L I + ED G Y C ATN
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 317 SLGTAETKCKLTVR 330
S+G+A L VR
Sbjct: 176 SIGSASVSTVLRVR 189
Score = 58.7 bits (142), Expect = 1e-10
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 13 KPPPTVKWYKGNREL------SKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHG 65
P P W K + S + + + + I++ + ED GEY+C ATN G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 66 TDETNCVVIV 75
+ + V+ V
Sbjct: 179 SASVSTVLRV 188
Score = 51.0 bits (122), Expect = 7e-08
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
S+ W K EL+ + S I + EDSGEY CV + +
Sbjct: 29 SSSHTLMYSYWTKNGVELTATRKNASNM----EYRINKPRAEDSGEYHCVY-HFVSAPKA 83
Query: 70 NCVVIVES 77
N + V++
Sbjct: 84 NATIEVKA 91
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 97.6 bits (243), Expect = 2e-24
Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 47/188 (25%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK-NGQPLNSSN--ILDLKYKNGV 244
Q + I G+ V GD + +SW NG+ L+ + I + +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTPLNSSNILDLK-------------- 289
++L I +D G+Y C T GT + +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 290 -------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATNSLGTA 321
G LQI+ + DEG Y C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 322 ETKCKLTV 329
+ V
Sbjct: 182 INFKDIQV 189
Score = 84.5 bits (209), Expect = 2e-19
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--- 241
F N T + +G+ + V P + W G+ + D+++
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK--DVRFIVLS 153
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
N LQI+ + DEG Y C +
Sbjct: 154 NN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Score = 56.0 bits (135), Expect = 2e-09
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDS 53
+ K G PPT+ W R++ K + S+ ++I K D
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDE 167
Query: 54 GEYKCVATNKHGTDETNCVVIVE 76
G Y+C + + V
Sbjct: 168 GTYRCEGRILARGEINFKDIQVI 190
Score = 55.6 bits (134), Expect = 2e-09
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 8 KVGSTKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
+V + W+ N E +R + D ++ I + +D+G YKCV T +
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84
Query: 64 HGTDETNCVVIV 75
GT V +
Sbjct: 85 DGTQSEATVNVK 96
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 96.8 bits (241), Expect = 7e-24
Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 51/196 (26%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA--S 246
PP+ +D + G+ L+ +G P P + W K G+ + + ++ + S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 247 LQIQEVFP-----EDEGVYVCTATNSLGTAETKC------------KLTPLNSSNILDLK 289
L + DEGVYVC A N LG A + + P + +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 290 ------------------YKNGVA-------------SLQIQEVFPEDEGVYVCTATNSL 318
K+G L I D G YVC TN +
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMV 188
Query: 319 GTAETK-CKLTVRSTP 333
G E++ +LTV P
Sbjct: 189 GERESEVAELTVLERP 204
Score = 80.6 bits (199), Expect = 4e-18
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSN---ILDLKYK 241
A+ F +D + G+ + +G PEP +SW K+G PL+ + +
Sbjct: 108 AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---- 163
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
G L I D G YVC TN +G E+
Sbjct: 164 GG--KLMITYTRKSDAGKYVCVGTNMVGERES 193
Score = 57.5 bits (139), Expect = 5e-10
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ P PT+ W K L +D ++ G + I + D+G+Y CV TN G
Sbjct: 134 QPPRGHPEPTISWKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGER 191
Query: 68 ETN 70
E+
Sbjct: 192 ESE 194
Score = 52.1 bits (125), Expect = 4e-08
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 13 KPPPTVKWYKGNRELS-----KRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKH 64
+P PT++WYKG + R + M G + + D G Y CVA N
Sbjct: 36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95
Query: 65 GTDETNCVVIVESEE 79
G ++ + +
Sbjct: 96 GEAVSHDASLEVAIL 110
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 92.9 bits (231), Expect = 1e-23
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 188 TPPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKN 242
P + N + + G+P P + W KNG+ I K +N
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SL ++ V P D+G Y C N G+ L
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 74.4 bits (183), Expect = 6e-17
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 4 VIKVKVGST---------KPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPED 52
+ V +T P PT++W K +E + R + S+ + P D
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 76
Query: 53 SGEYKCVATNKHGTDETNCVVIV 75
G Y CV N++G+ + V
Sbjct: 77 KGNYTCVVENEYGSINHTYHLDV 99
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 92.9 bits (231), Expect = 2e-23
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP ++T+ LS V G P P + W K+G +++ + + +NG LQ
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQ 65
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I+ D G Y C A+ G A +
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
Score = 60.2 bits (146), Expect = 1e-11
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDSG 54
V V T P PT+ W K +S +D + +G ++I K D+G
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQIRYAKLGDTG 75
Query: 55 EYKCVATNKHGTDETNCVVIVES 77
Y C+A+ G + + V+
Sbjct: 76 RYTCIASTPSGEATWSAYIEVQE 98
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 91.3 bits (227), Expect = 5e-23
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
PP ++T+ L GDP P +SW K G + + G +LQ
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQ 65
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I+ + D G Y C AT+S G L
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 60.9 bits (148), Expect = 4e-12
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P + W K RD + G +++I + + D+G Y CVAT+ G + V
Sbjct: 36 PLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAV 93
Query: 73 VIVE 76
+ V
Sbjct: 94 LDVT 97
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 93.4 bits (232), Expect = 1e-22
Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 51/200 (25%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPR-VSWTKNGQPLNSSNILDLKY 240
P + P + + + +G+ + L P+ W N P+ +
Sbjct: 2 PGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV 61
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----------- 289
+L I V D+G Y C ++ T K PL K
Sbjct: 62 SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 290 --------------------------YKNGVA------------SLQIQEVFPEDEGVYV 311
K L+I + EDEG+Y
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYE 181
Query: 312 CTATNSLGTAETKCKLTVRS 331
C A N G + + ++ V++
Sbjct: 182 CEAENIRGKDKHQARIYVQA 201
Score = 89.9 bits (223), Expect = 2e-21
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
S+ I T P + D GQ + L G+P P + W K
Sbjct: 90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK 149
Query: 226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+P+ S+ + A L+I + EDEG+Y C A N G + + ++
Sbjct: 150 VLEPMPSTA----EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 62.6 bits (152), Expect = 1e-11
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P P ++W K + +S S ++I + + ED G Y+C A N G D+ +
Sbjct: 141 PVPDIRWRKVLEPMPSTAE-ISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Query: 74 IVES 77
V++
Sbjct: 198 YVQA 201
Score = 50.7 bits (121), Expect = 1e-07
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 10 GSTKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
+ +W + + +S ++G ++ I + + D G Y C ++ T
Sbjct: 34 YHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSIT 91
Query: 67 DETNCVVIVESEEESKEQQELAHNFLYS 94
I + + + +
Sbjct: 92 KSVFSKFIPLIPIPERTTKPYPADIVVQ 119
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 88.9 bits (221), Expect = 3e-22
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P +F L D + +G L V+ P V W L + L+ + + L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ + P+D G Y C+ G T LT
Sbjct: 67 VRNLRPQDSGRYSCSF----GDQTTSATLT 92
Score = 67.7 bits (166), Expect = 2e-14
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+ VKW GN L YS+ ++ + + + +P+DSG Y C G T+
Sbjct: 33 SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTS 88
Query: 71 CVVIVESEEE 80
+ V +
Sbjct: 89 ATLTVTALPS 98
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 88.9 bits (221), Expect = 3e-22
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P L D+ + G+ ++L + P V W K+ + + S D+ + +A L
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 249 IQEVFPEDEGVYVCTATNSLGTAE 272
I+ +D G Y C S TA
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTAS 90
Score = 65.0 bits (159), Expect = 2e-13
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 12 TKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
++ V W K + + K + Y + + + I +D+GEY C T
Sbjct: 33 SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST---- 88
Query: 71 CVVIVE 76
+ VE
Sbjct: 89 ASLHVE 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 87.4 bits (217), Expect = 1e-21
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ ++ + G L L ++ D ++W ++G L SN + + +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN----RTRITGEEV 56
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++Q+ P D G+Y C ++ G+ T +
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Score = 64.7 bits (158), Expect = 2e-13
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
++ W + +L++ + ++ +E+ D P DSG Y CV ++ G+D T
Sbjct: 30 DVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85
Query: 73 VIVESEEES 81
V V S
Sbjct: 86 VNVSDALPS 94
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 87.1 bits (216), Expect = 1e-21
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
+ + Q + + G + L+ V P P++ W K+G PL +
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------SP- 57
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L + E+ P+D+G Y C AT+S + ++
Sbjct: 58 -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 50.9 bits (122), Expect = 1e-08
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 17/84 (20%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
V G T +P P + W K L + + + P+D G
Sbjct: 20 GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP------LPPSP--VLILPEIGPQDQGT 71
Query: 56 YKCVATNKHGTDETNCVVIVESEE 79
Y CVAT+ + + V + E
Sbjct: 72 YSCVATHSSHGPQESRAVSISIIE 95
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 85.5 bits (212), Expect = 5e-21
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
+ + + LTD+T++ G+ + L + + + WTKNG P+ S+ L + K +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRI 60
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I EDEG YV K+
Sbjct: 61 HKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
Score = 61.6 bits (150), Expect = 2e-12
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 5 IKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEY 56
V +G KW K + + + + + I + ED G+Y
Sbjct: 17 QTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
Query: 57 KCVATNKHGTDETNCVVIVES 77
V V S
Sbjct: 77 VFAPDA--YNVTLPAKVHVIS 95
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 85.1 bits (211), Expect = 1e-20
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+L + +G+ V+ WT G+ + SS+ + L
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAE 272
++E P D G V + A
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSKAS 92
Score = 62.4 bits (152), Expect = 1e-12
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 6 KVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
+ + W G + + S + + + + + P D+GE
Sbjct: 29 ECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT 88
Query: 65 GT 66
Sbjct: 89 SK 90
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 88.4 bits (219), Expect = 1e-20
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 189 PPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNG 243
P + N + + G+P P + W KNG+ + I K +N
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SL ++ V P D+G Y C N G+ L
Sbjct: 75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
Score = 83.0 bits (205), Expect = 9e-19
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
S + T L + + P A + + G ++ V D +P + W K+ +
Sbjct: 101 SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG 160
Query: 232 SSNILDLK-----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
S D + L + V D G Y+C +N +G A LT
Sbjct: 161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Score = 70.7 bits (173), Expect = 2e-14
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 3 NVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPE 51
+ V +T P PT++W K +E R + S+ + P
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86
Query: 52 DSGEYKCVATNKHGTDETNCVVIVESEEESK 82
D G Y CV N++G+ + V +
Sbjct: 87 DKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
Score = 58.4 bits (141), Expect = 3e-10
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 22/107 (20%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSKR------------DYSMSYSDG 39
N VG P ++W K + + +S S
Sbjct: 125 PANAS-TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 40 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 86
+ + + D+GEY C +N G + + V ++++ +++
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 89.2 bits (221), Expect = 2e-20
Identities = 34/281 (12%), Positives = 68/281 (24%), Gaps = 52/281 (18%)
Query: 17 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
+V+W D S ++ + +++G Y+C T + V
Sbjct: 31 SVEWDGPISPYWTLDPESPGS----TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV- 85
Query: 77 SEEESKEQQELAHNFLYSGDRKYIEKH-----------IRPAPAIITTR--QEIKSSYSS 123
++ AH++ + + ++ R +
Sbjct: 86 --------KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV 137
Query: 124 HTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI 180
+ R Y T S + P
Sbjct: 138 YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP----------- 186
Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ---PLNSSNILD 237
PQ + + G+ + K G + ++
Sbjct: 187 ---------PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
Y V +L + V +D G+Y C A+N +GT
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 78.8 bits (194), Expect = 7e-17
Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 54/197 (27%)
Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ + T+ +GQ L + + VS + G +
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--GF 146
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK--------------------------------- 274
I++ D YVC + + +
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206
Query: 275 -CKLT-----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
C T + ++ Y V +L + V +D G+Y C A+N
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASN 266
Query: 317 SLGTAETKCKLTVRSTP 333
+GT V +
Sbjct: 267 DVGTRTATMNFQVVESH 283
Score = 65.7 bits (160), Expect = 2e-12
Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 53/194 (27%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
A P + ++ G+ + L V G V W P + + ++ +
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP-----ESPGS 51
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK------------------------------C 275
+L + ++ G Y CT T C
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPC 111
Query: 276 KLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCTATNS-LGTA 321
+T + + L + G I++ D YVC + +
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST 171
Query: 322 ETKCKLTVRSTPAA 335
T L V
Sbjct: 172 STGIWLKVNRVHPE 185
Score = 51.1 bits (122), Expect = 2e-07
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 13/84 (15%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVV----SMEIIDCKPE 51
+ G K + + + D ++ + +
Sbjct: 196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ 255
Query: 52 DSGEYKCVATNKHGTDETNCVVIV 75
D+G Y CVA+N GT V
Sbjct: 256 DAGIYSCVASNDVGTRTATMNFQV 279
Score = 47.6 bits (113), Expect = 2e-06
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 7/132 (5%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
+V + R +S I K DS Y C + +
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Query: 74 IVESEEESKE---QQELAHNFLYSGDRKYIEKHIR--PAPAIIT-TRQEIKSSYSSHTDD 127
+ + + + E + G+ I + R + K ++D
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 128 TGRTTTQMSTLS 139
++ LS
Sbjct: 237 QDNYYKKVRALS 248
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 84.3 bits (209), Expect = 2e-20
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
P +F L ++ +G L + V W K + L + L+ L
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARCEL 75
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
QI+ + ED G Y+C G T LT
Sbjct: 76 QIRGLVAEDAGEYLCMC----GKERTSAMLT 102
Score = 65.5 bits (160), Expect = 2e-13
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 5 IKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEY 56
+ G+T V+W+KG+ L +S+ ++I ED+GEY
Sbjct: 29 EEATEGATAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEY 88
Query: 57 KCVATNKHGTDETNCVVIVE 76
C+ G + T+ ++ V
Sbjct: 89 LCMC----GKERTSAMLTVR 104
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 89.0 bits (220), Expect = 2e-20
Identities = 37/289 (12%), Positives = 76/289 (26%), Gaps = 38/289 (13%)
Query: 5 IKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
+ + V ST V W + ++E + + + + D+GEY C
Sbjct: 10 LVLNVSSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69
Query: 60 ATNKHGTDETNCV---VIVESEEESKEQQELAHNFLYS--GDRKYIEKHIRPAPAIITTR 114
+ G + + V + F++ I + ++T
Sbjct: 70 HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLH 129
Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
++ D R + + +Y T D S +
Sbjct: 130 EKKGDVALPVPYDHQRGFSGIFE-DRSYICKTTIG-----------------DREVDSDA 171
Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
+ + + G+ + L +V G+ WT +
Sbjct: 172 YYVYRLQVS-----SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
Query: 235 ILDLKYKNGVA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + L I ED G Y C T S+ + + +
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 54.7 bits (131), Expect = 1e-08
Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 50/187 (26%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
+TPP + ++ + V+ V W + Q + + +
Sbjct: 3 VTPPG-----PELVLNVSS----TFVLTCSGSAPVVWERMSQEP-PQEMAKAQDGTFSSV 52
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
L + + D G Y CT +S G +
Sbjct: 53 LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITE 112
Query: 275 ----CKLTPLNSSNIL----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326
C++T L Q ++ Y+C T ++
Sbjct: 113 ITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAY 172
Query: 327 LTVRSTP 333
R
Sbjct: 173 YVYRLQV 179
Score = 46.6 bits (110), Expect = 5e-06
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 14 PPPTVKWYKGNREL-----SKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKHGTD 67
+W +E D+ + + S + I + EDSG Y C T
Sbjct: 209 EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268
Query: 68 ETNCVVIV 75
+ + +
Sbjct: 269 QDEKAINI 276
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 83.5 bits (207), Expect = 3e-20
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
AM + L + G+ + +P+ W GQPL +S ++
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L + G A N ++ L
Sbjct: 61 ILILHNCQLGMTGEVSFQAAN----TKSAANLK 89
Score = 62.7 bits (153), Expect = 9e-13
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 1 MQNVIKVKVGST--------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 51
+ V +V VG T +P +W + L + D + + + +C+
Sbjct: 12 LYGV-EVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLG 70
Query: 52 DSGEYKCVATNKHGTDETNCVVIVE 76
+GE A N ++ + V+
Sbjct: 71 MTGEVSFQAAN----TKSAANLKVK 91
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 83.5 bits (207), Expect = 3e-20
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
+ F +LT+ +++ + P V+W K L +S +
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTL 63
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I + D Y C G A+++ +L
Sbjct: 64 RLTISALEKADSDTYTCDI----GQAQSRAQLL 92
Score = 70.1 bits (172), Expect = 3e-15
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
P TV W KG EL + + S + + I + DS Y C G ++
Sbjct: 33 EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSR 88
Query: 71 CVVIVESEE 79
++V+
Sbjct: 89 AQLLVQGRR 97
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 84.0 bits (208), Expect = 3e-20
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASL 247
L D + +G + V W + PL+++ + ++ + G L
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++++ +D G A G L
Sbjct: 73 TLRQLALKDSGTIYFEA----GDQRASAALR 99
Score = 58.2 bits (141), Expect = 7e-11
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 11 STKPPPTVKWYKGNREL-SKRDYSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
S V W+ L + + G + + +DSG A G
Sbjct: 38 SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQR 93
Query: 69 TNCVVIVESEE 79
+ + V +
Sbjct: 94 ASAALRVTEKP 104
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 84.3 bits (208), Expect = 5e-20
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-------------N 234
F + G ++L G P P + W GQ N +
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I +++ +++ I + ED G Y C A+N
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 58.5 bits (141), Expect = 9e-11
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 14 PPPTVKWYKGNRELSK--------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
P P ++W+ + + ++ + ++ I ED+G Y+C
Sbjct: 49 PVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECR 108
Query: 60 ATNKHGTDETNCVVIV 75
A+N + V
Sbjct: 109 ASNDPDRNHLTRAPRV 124
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 83.6 bits (207), Expect = 5e-20
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 51
++ KVG KP P V W KG L + SD +
Sbjct: 30 LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARS 89
Query: 52 DSGEYKCVATNKHGTDETNCVVIV 75
DSGEY+ ++ D + V
Sbjct: 90 DSGEYELSVQIENMKDTATIRIRV 113
Score = 81.3 bits (201), Expect = 3e-19
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
T +E+ PP P G+ L+L +G P P+V WTK G PL++S
Sbjct: 14 TIREIAEPP-KIRLPRHLRQTYI---RKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR 69
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ ++ + +++ D G Y + ++
Sbjct: 70 V-HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 82.9 bits (205), Expect = 6e-20
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
P L T D C+ + VKG+P+P + W NG LN S + K
Sbjct: 4 APTI-TFLESPTSDHHWCIPFT--VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 245 -ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
LQ+ + G Y A N G E +
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 67.5 bits (165), Expect = 2e-14
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 13 KPPPTVKWYKGNRELSKRDY------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
P P ++W+ L++ Y ++++ +++ + ++G+Y +A N++G
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Query: 67 DETNCVVIVES 77
DE
Sbjct: 88 DEKQISAHFMG 98
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 89.5 bits (221), Expect = 7e-20
Identities = 41/362 (11%), Positives = 92/362 (25%), Gaps = 59/362 (16%)
Query: 8 KVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
+V P TV +G +EL + V+ ++ + + C
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAVGE--PAEVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT 125
S + L + +E + S H
Sbjct: 167 PQGLELFENT-SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Query: 126 DDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDT 185
+ T ++ S+ + + + + ++S+ T + + T
Sbjct: 226 ALGDQRLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQETLQTV-----T 279
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
+ P LT + +G + + + ++ +
Sbjct: 280 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRA------------ 327
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC------------KLTPLNSSNILDLK---- 289
L ++ ++ + C+AT + +L +
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387
Query: 290 -----------------YKNGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTV 329
K+G L I E + EG Y+C A ++ G + + V
Sbjct: 388 QTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Query: 330 RS 331
S
Sbjct: 448 LS 449
Score = 54.9 bits (131), Expect = 2e-08
Identities = 43/362 (11%), Positives = 92/362 (25%), Gaps = 65/362 (17%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
S P + L K++ + + E+ + ++ + C + G
Sbjct: 24 SCDQPMLLGIET---PLPKKELLLP-GNNRKVYELSN--VQEDSQPMCYSNCPDGQSTAK 77
Query: 71 CVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPAIITT---RQEIKSSYSSH 124
+ V E E L G + + P + ++ +
Sbjct: 78 TFLTVYWTPERVELAPLPSWQ-PVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV 136
Query: 125 TDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD 184
+ TTT + + ++ + LD
Sbjct: 137 GEPAEVTTTVLVRRDHHGANFSCRTE-------------LDLRPQGLELFENTSAPYQLQ 183
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNILDLKYK 241
T + P ++ + ++ + + G E +V Q LN +
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG---N 240
Query: 242 NGVASLQIQEVFPEDEGVY--VCTATNSLGTAETKCKLT----PLNSSNILDLKYKNG-- 293
+ ++ V EDEG C + ET +T P + + + G
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 300
Query: 294 -------------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 328
A L ++ ++ + C+AT + T
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 329 VR 330
Sbjct: 361 RE 362
Score = 34.1 bits (77), Expect = 0.067
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 278 TPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
TPL +L G + +++ +C + G + K LTV TP
Sbjct: 35 TPLPKKELLL----PGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTP 86
Score = 33.3 bits (75), Expect = 0.13
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
G + ++ D + PL +L G + +++ +C
Sbjct: 14 GGSVLVTCSTSCDQPMLLGIET---PLPKKELLL----PGNNRKVYELSNVQEDSQPMCY 66
Query: 264 ATNSLGTAETKCKLT 278
+ G + K LT
Sbjct: 67 SNCPDGQSTAKTFLT 81
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 86.5 bits (214), Expect = 7e-20
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 189 PPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNG 243
P + + + G+P P +SW KNG+ + I +K ++
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SL ++ V P D G Y C N G+ L
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Score = 82.3 bits (203), Expect = 2e-18
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
S T L + + P A ++T G ++ V D +P + W K+ +
Sbjct: 97 SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG 156
Query: 232 SSNILDLKY------------KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
S D L++ V D G Y+C ATN +G AE L+
Sbjct: 157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Score = 68.4 bits (167), Expect = 2e-13
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 4 VIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPED 52
++ V +T P P++ W K RE R + S+ + P D
Sbjct: 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 53 SGEYKCVATNKHGTDETNCVVIVESEEESK 82
G Y CV NK G+ + V +
Sbjct: 84 RGNYTCVVENKFGSIRQTYTLDVLERSPHR 113
Score = 56.1 bits (135), Expect = 2e-09
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 22/102 (21%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSK-------------RDYSMSYSDGVVS 42
+GS P ++W K + + + V
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 43 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 84
+ + + D GEY C ATN G E + V ++E+
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 85.4 bits (211), Expect = 8e-20
Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 61/205 (29%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS----SNILDLKYK 241
AM + + I + + LS G PRV W + +N + Y+
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 242 NGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------- 278
+ V + + V ED G Y C + G + + K+
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 279 ---------------------------PLNSSNILDLKYKNGVASL-------QIQEVFP 304
+ ++ + N L +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 305 EDEGVYVCTATNSLGTAETKCKLTV 329
D G Y C A N GT T + +
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 81.9 bits (202), Expect = 2e-18
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+ PP + G L+ + G P +W K+G + ++ + N
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 244 VA-------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L + D G Y C A N GT T +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 61.5 bits (149), Expect = 3e-11
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 13 KPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
PP W+K + S Y ++ + G + D+GEY C A N
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARN 192
Query: 63 KHGTDETNCVVIVESEE 79
+GT T+ V +E+ E
Sbjct: 193 GYGTPMTSNAVRMEAVE 209
Score = 48.4 bits (115), Expect = 7e-07
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 11 STKPPPTVKWYKGNRELS-----KRDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVAT 61
S P V+W + + + SY D V + ED+G Y C+ +
Sbjct: 29 SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS 88
Query: 62 NKHGTDETNCVVIVE 76
+ G V +
Sbjct: 89 EEGGNSYGEVKVKLI 103
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 82.4 bits (204), Expect = 1e-19
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
+ + + D T+ + V D + W KNG + S + + +
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSS 283
L I +V PEDEG Y + K + S
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVS 101
Score = 67.4 bits (165), Expect = 2e-14
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+ T KWYK E+ + ++S+ + I D +PED G+Y V + +
Sbjct: 33 SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS--LS 90
Query: 71 CVVIVESEEESK 82
+ + S
Sbjct: 91 AKLNFLEIKVSG 102
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 82.6 bits (204), Expect = 1e-19
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
PP+ L + + C++ VV+G+P P + W NGQPL S I+ ++Y
Sbjct: 8 PPRV-VSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L + + G Y A N LGTA
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 65.2 bits (159), Expect = 2e-13
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSM---EIIDCKPEDSGEYKCVATNKHGTD 67
PPPT+ W + L SK + Y +G +S ++G Y +A N GT
Sbjct: 32 NPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA 91
Query: 68 ETNCVVIV 75
Sbjct: 92 NQTINGHF 99
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 81.2 bits (201), Expect = 2e-19
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK----NGV 244
P L D+ + G ++++ V + +V W KNG L + +Y+
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAE 272
L +V ED G Y AE
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAE 94
Score = 67.0 bits (164), Expect = 3e-14
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 12 TKPPPTVKWYKGNRELSKRD-----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
++ V W K EL++ D Y + D ED G Y+ +
Sbjct: 33 SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG---- 88
Query: 67 DETNCVVIVESEE 79
+ +IVE ++
Sbjct: 89 GQCEAELIVEEKQ 101
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 88.0 bits (218), Expect = 3e-19
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 6/145 (4%)
Query: 134 QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA 193
++ + P +I+ + D + P+F
Sbjct: 433 KIRDSIKTKYDAWPEPLPPLGRISNY------SSLRKHRPQEYSIRDAFWDRSEAQPRFI 486
Query: 194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF 253
K + +GQ + V P V+W K+ + L S +Y L I V
Sbjct: 487 VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVK 546
Query: 254 PEDEGVYVCTATNSLGTAETKCKLT 278
+D+G Y A NS GT E L
Sbjct: 547 GDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 77.6 bits (191), Expect = 8e-16
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 14 PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
PP V W+K +REL + Y Y+ + I K +D GEY A N +GT E
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 569
Query: 73 VIV 75
+ V
Sbjct: 570 LNV 572
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 86.3 bits (213), Expect = 4e-19
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 49/220 (22%)
Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
+ L P+ + P ++ + ++D G + L V+G +
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ 189
Query: 221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTP 279
W +++ + + L + V + + C A N +G AE ++
Sbjct: 190 AGWILTELEQSATVMKSGGLPSL--GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Query: 280 LNSSNILDLK-----------------------YKNGVA--------------------- 295
+++ NG
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307
Query: 296 --SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
L++ + + G Y A N G A P
Sbjct: 308 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 52.4 bits (125), Expect = 7e-08
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVV--------SMEIIDCKPEDSGEYKCVATNKHG 65
P P+++W L++ + + + + ++G Y +A N G
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 66 TDETNCVVIV 75
+ +
Sbjct: 334 QASASIMAAF 343
Score = 50.9 bits (121), Expect = 3e-07
Identities = 10/62 (16%), Positives = 13/62 (20%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
W E S + + C A N G E + V
Sbjct: 186 GLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245
Query: 74 IV 75
V
Sbjct: 246 NV 247
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 80.2 bits (198), Expect = 4e-19
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P ++ + G L L ++ D ++W ++G L SN + + ++
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN----RTRITGEEVE 63
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+++ P D G+Y C ++ G+ T +
Sbjct: 64 VRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 61.7 bits (150), Expect = 2e-12
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
++ W + +L + + ++ +E+ D P DSG Y CV ++ G+D T
Sbjct: 36 DVQSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91
Query: 73 VIV 75
V V
Sbjct: 92 VNV 94
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 80.5 bits (199), Expect = 4e-19
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
P F+ K + G A + +V W + G +++SN L +
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE 59
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L ++EV P D+G Y A G+++ K L
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 63.9 bits (156), Expect = 3e-13
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 5 IKVKVGST--------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGE 55
++V GS + V+W +G ++S Y ++ ++ + + P D G
Sbjct: 18 VEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGS 77
Query: 56 YKCVATNKHGTDETNCVVIVE 76
Y +A G+ + + V
Sbjct: 78 YAVIA----GSSKVKFDLKVI 94
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 79.7 bits (197), Expect = 8e-19
Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
P +F L K +G L + V W K + L LK LQ
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
I ++ D G Y C G T LT
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATLT 91
Score = 66.2 bits (162), Expect = 6e-14
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 1 MQNVIKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPED 52
++ + G+T V+W KG L YS+ ++I D D
Sbjct: 15 LKTK-EASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73
Query: 53 SGEYKCVATNKHGTDETNCVVIVE 76
+GEY C+ G + T+ + V
Sbjct: 74 AGEYSCMC----GQERTSATLTVR 93
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 79.4 bits (196), Expect = 1e-18
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
+ + + + G LS V + V+W K+G+ L+SS+ + ++
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L +Q+ + G Y C A G + +L
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95
Score = 66.3 bits (162), Expect = 6e-14
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 5 IKVKVGST--------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGE 55
++ + G++ + V WYK ++LS + + + ++GE
Sbjct: 21 VQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGE 80
Query: 56 YKCVATNKHGTDETNCVVIVESE 78
Y C A G + + + V +
Sbjct: 81 YSCEA----GGQQLSFRLQVAGQ 99
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 82.2 bits (203), Expect = 2e-18
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
A+ F + D + G+ L KG PEP + W K+G PL+ + + V
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 245 A-----SLQIQEVFPEDEGVYVCTATNSLGTAET 273
+L I V P DEG Y C A N +GT E+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198
Score = 76.8 bits (189), Expect = 1e-16
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGV-- 244
P+ TD + + L+ V+G PEP + W K+G+P++++ + + +G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
+Q +D G Y C A N +G A ++
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 56.0 bits (135), Expect = 2e-09
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 13 KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKHGT 66
KP PT++W+K +S + + + + DG + + K +D GEY CVA N+ G
Sbjct: 36 KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Score = 55.6 bits (134), Expect = 3e-09
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNKHGTD 67
P PT+ W K L + V ++ I + +P D G YKC+A N GT
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 68 ETNCVVIV 75
E++ ++
Sbjct: 197 ESSYAKLI 204
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 81.5 bits (201), Expect = 2e-18
Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 48/184 (26%)
Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG---- 243
F + T G L + P V W ++GQ L ++ + G
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 244 -----VASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLT----------------PLN 281
V+ L+I + D G Y C T ++ + N
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 282 SSNILDLK------------YKNGVA---------SLQIQEVFPEDEGVYVCTATNSLGT 320
+ L + ++ V + + C A N+ G
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGV 181
Query: 321 AETK 324
++
Sbjct: 182 TTSR 185
Score = 70.3 bits (172), Expect = 1e-14
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVAS 246
P F + D+T+ +LS +G PEP + W ++ PL ++ S
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-----GHGPQRS 159
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK 274
L + + + C A N+ G ++
Sbjct: 160 LHVPGL--NKTSSFSCEAHNAKGVTTSR 185
Score = 51.4 bits (123), Expect = 6e-08
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV----------SMEIIDCKPEDSGEYKC 58
+ PP V W + + L D + + + I + D+G+Y+C
Sbjct: 26 LQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQC 85
Query: 59 VATNKHGTDET 69
+ H T +
Sbjct: 86 LVFLGHQTFVS 96
Score = 45.3 bits (107), Expect = 7e-06
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 13 KPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P P + W + L+ + + + C A N G +
Sbjct: 133 PPEPVDLLWLQDAVPLATAPGHGPQR------SLHVPGLNKTSSFSCEAHNAKGVTTSRT 186
Query: 72 VVIV 75
I
Sbjct: 187 ATIT 190
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 78.7 bits (194), Expect = 3e-18
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK----NGV 244
PP+ +D + G+ L+ +G P P + W K G+ + + ++ +G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG- 67
Query: 245 ASLQIQEVF-----PEDEGVYVCTATNSLGTAETK 274
SL + DEGVYVC A N LG A +
Sbjct: 68 -SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Score = 53.3 bits (128), Expect = 3e-09
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 14 PPPTVKWYKGNRELS-----KRDYSMSYSDG---VVSMEIIDCKPEDSGEYKCVATNKHG 65
P PT++WYKG + R + M G + + D G Y CVA N G
Sbjct: 37 PTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Query: 66 TDET-NCVVIVESEEESKEQQ 85
+ + + V +
Sbjct: 97 EAVSHDASLEVAAAAHHHHHH 117
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 81.6 bits (201), Expect = 3e-18
Identities = 25/206 (12%), Positives = 46/206 (22%), Gaps = 62/206 (30%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA---- 245
+D + + + + L+ G PRV W + + + A
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 246 ----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
+ V +D G Y C + G + +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 279 -----------------------PLNSSNILDLKYKN--------GVASLQIQEVFPEDE 307
+ +++ + L V D
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 308 GVYVCTATNSLGTAETKCKLTVRSTP 333
G Y C A N GTA + +
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 79.2 bits (195), Expect = 2e-17
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN- 242
T + PP ++ G L+ + G P SW K+G + +++ +
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 243 -------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L V D G Y C A N GTA
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 56.5 bits (136), Expect = 2e-09
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSME---------IIDCKPEDSGEYKCVATNK 63
PP W+K + D + + S DSGEY C A N
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
Query: 64 HGTDETNCVVIVESEE 79
+GT + +++ E
Sbjct: 192 YGTAMRSEAAHMDAVE 207
Score = 46.9 bits (111), Expect = 2e-06
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 11 STKPPPTVKWYKGNRELSK-----RDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVAT 61
S P V+W + + Y+D V + +D+GEY C+ +
Sbjct: 26 SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVS 85
Query: 62 NKHGTDETNCVVIVE 76
+ G + + +
Sbjct: 86 EEGGQNYGEVSIHLT 100
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 81.0 bits (200), Expect = 4e-18
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
++P + M P+ +G ++++ V P +SW ++GQ L SSN ++K
Sbjct: 10 LVPRGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68
Query: 240 YKN--GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
N + L++ D G Y CTA N +G + L
Sbjct: 69 IYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Score = 66.4 bits (162), Expect = 5e-13
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 5 IKVKVGST---------KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPED 52
+ G+ P T+ W++ + L + + + +E+ D
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 53 SGEYKCVATNKHGTDETNCVVIV 75
G Y C A N+ G + +++
Sbjct: 88 FGNYNCTAVNRIGQESLEFILVQ 110
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 77.4 bits (191), Expect = 5e-18
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ Q + T + + G L L V G P P W KN PL
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLY 52
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK 274
+ V E +G Y C N + ++K
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 54.3 bits (131), Expect = 8e-10
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 7 VKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYK 57
+ GST P P +W+K L+ + E G Y
Sbjct: 15 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------LYMVPYVDLEHQGTYW 66
Query: 58 CVATNKHGTDETNCVVIVESEEES 81
C N + ++ V I+ E +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNN 90
Score = 45.4 bits (108), Expect = 1e-06
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 290 YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+KN + + V E +G Y C N + ++K +
Sbjct: 38 FKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 81.1 bits (199), Expect = 3e-17
Identities = 38/305 (12%), Positives = 78/305 (25%), Gaps = 54/305 (17%)
Query: 11 STKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME-----IIDCKPEDSGEYKCVATNKH 64
+ T+ WY + + + +S E D+G Y C+ N
Sbjct: 43 AHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT 102
Query: 65 GTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSH 124
+ + V ++ + P + + + +
Sbjct: 103 YCSKVAFPLEVVQKDSC-----------------FNSPMKLPVHKLYIEYGIQRITCPNV 145
Query: 125 TDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS--------------PS 170
+ T N + + L +++
Sbjct: 146 DGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTF 205
Query: 171 RSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVV----KGDPEPRVSWT 224
T ++ PP + + G+ L + V D V WT
Sbjct: 206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265
Query: 225 KNGQPLN----------SSNILDLKYKNGVASLQIQEVFPEDEGV-YVCTATNSLGTAET 273
+G+ + S + + + L I++V ED YVC A ++ G
Sbjct: 266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325
Query: 274 KCKLT 278
K+
Sbjct: 326 AAKVK 330
Score = 63.3 bits (153), Expect = 2e-11
Identities = 16/170 (9%), Positives = 31/170 (18%), Gaps = 53/170 (31%)
Query: 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-----ASLQIQEVFPEDE 257
L + + W Q + ++ + L + D
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 258 GVYVCTATNSLGTAETKCKLTPLNSSNILDLK---------------------------- 289
G Y C N+ ++ L + + +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 290 --------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLG 319
Y +L + G Y C T
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201
Score = 47.2 bits (111), Expect = 4e-06
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 12/78 (15%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGV-----------VSMEIIDCKPED-SGEYKC 58
V W ++ ++ ++ + + I ED Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 59 VATNKHGTDETNCVVIVE 76
A + G V +
Sbjct: 315 HARSAKGEVAKAAKVKQK 332
Score = 44.5 bits (104), Expect = 3e-05
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
L + D G Y C N+ ++ L V +
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVH 129
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 76.1 bits (187), Expect = 3e-17
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
P +L C+ V G P P + W NG LN ++ + ++
Sbjct: 3 MPASV-QLHTAVEMHHWCI--PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 245 ---ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L++ + + G Y A N G A
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
Score = 60.7 bits (147), Expect = 1e-11
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 14 PPPTVKWYKGNRELSKRDY--------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P P+++W L++ + + + + + + ++G Y +A N G
Sbjct: 28 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 87
Query: 66 TDETNCVVIV 75
+ +
Sbjct: 88 QASASIMAAF 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 75.5 bits (186), Expect = 3e-17
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 188 TPPQFANKLTDKT-IDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
+ FA L +D G + + DP+ V W KNGQ + S ++K
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I D+ Y TA G + +L
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELF 92
Score = 66.6 bits (163), Expect = 3e-14
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 1 MQNVIKVKVGST--------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 51
+ +V G P VKWYK +E+ Y + + I +C+
Sbjct: 14 LDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMT 73
Query: 52 DSGEYKCVATNKHGTDETNCVVIVES 77
D EY A G ++ + + V S
Sbjct: 74 DDSEYYVTA----GDEKCSTELFVRS 95
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 75.6 bits (186), Expect = 4e-17
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
+ + + + + L+ + P V WTK+G+ + S L L+ ++ V L
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ V ED G Y+C +T
Sbjct: 71 VLPAVQLEDSGEYLCEI----DDESASFTVT 97
Score = 65.6 bits (160), Expect = 1e-13
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 12 TKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+P V+W K E+ + + D V + + + EDSGEY C + +
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESAS 93
Query: 71 CVVIVE 76
V V
Sbjct: 94 FTVTVT 99
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 74.7 bits (184), Expect = 6e-17
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVA 245
+ +L D T G+ ++L V + + V W KNG+ + + +
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
L I+ D Y T ++ KL+
Sbjct: 65 ILIIEGATKADAAEYSVMTTG----GQSSAKLS 93
Score = 65.4 bits (160), Expect = 1e-13
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 12 TKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
++ VKW+K E+ K Y + + I D+ EY + T +
Sbjct: 32 SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQ 87
Query: 69 TNCVVIVESEE 79
++ + V+ +
Sbjct: 88 SSAKLSVDLKS 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 74.3 bits (183), Expect = 9e-17
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 188 TPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVA 245
F KL + G + L+ + D + V W KNGQ + S +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAE 272
+L I + D+ Y C + E
Sbjct: 73 TLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 69.3 bits (170), Expect = 5e-15
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 1 MQNVIKVKVGS--------TKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKP 50
++ +V G VKW K +E+ S Y ++ I C
Sbjct: 22 LEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL 81
Query: 51 EDSGEYKCVATNKHGTDETNCVVIVE 76
D Y+CV G ++ + + V+
Sbjct: 82 ADDAAYQCVV----GGEKCSTELFVK 103
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 77.4 bits (190), Expect = 3e-16
Identities = 42/308 (13%), Positives = 83/308 (26%), Gaps = 66/308 (21%)
Query: 8 KVGSTKPPPT----VKWYKGNRELSKRDYSMSY-------------------SDGVVSME 44
+ T + W + S + + S+
Sbjct: 23 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82
Query: 45 IIDCKPEDSGEYKC-VATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKH 103
+ + ED G Y C T G+ + + V ++ ++ +G+ + +
Sbjct: 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN---TAEVQKVQLTGEPVPMARC 139
Query: 104 I----RPAPAII--TTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN------ATS 151
+ RP I + + ++ S T T S SS +
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNT-SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEH 198
Query: 152 PSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA 211
S + + + L P I D + L+
Sbjct: 199 ESFEKPQLLTVNLTVYYPPE------VSISGYD-------------NNWYLGQNEATLTC 239
Query: 212 VVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
+ +PEP +W+ PL + L I+ V +C TN+LG
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPFAVAQ----GA--QLLIRPVDKPINTTLICNVTNALGA 293
Query: 271 AETKCKLT 278
+ + +
Sbjct: 294 RQAELTVQ 301
Score = 73.2 bits (179), Expect = 8e-15
Identities = 22/206 (10%), Positives = 48/206 (23%), Gaps = 50/206 (24%)
Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNG 227
P SRS L + + PQ ++ + G P +++W +
Sbjct: 102 PQGSRSVDIWLRV-----LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156
Query: 228 QPLNSSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------ 278
+ +++ + + D C + +
Sbjct: 157 GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216
Query: 279 ------PLNSSNI-----LDLK--------------YKNGVA----------SLQIQEVF 303
+++ L L I+ V
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVD 276
Query: 304 PEDEGVYVCTATNSLGTAETKCKLTV 329
+C TN+LG + + + V
Sbjct: 277 KPINTTLICNVTNALGARQAELTVQV 302
Score = 48.9 bits (116), Expect = 8e-07
Identities = 10/62 (16%), Positives = 13/62 (20%), Gaps = 5/62 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P W L + I + C TN G + V
Sbjct: 246 EPTGYNWSTTMGPLPPF---AVAQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTV 300
Query: 74 IV 75
V
Sbjct: 301 QV 302
Score = 42.0 bits (98), Expect = 2e-04
Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 38/143 (26%)
Query: 197 TDKTIDDGQCLDLSAVVKGDPEP-----RVSWTKNGQPLNSSNILDLKYKNGVASLQIQE 251
T G + L ++ +++W ++G+ + + Q
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF---------HQTQGPS 58
Query: 252 VFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV 311
+V + + ASL++ + EDEG Y
Sbjct: 59 YSESKRLEFVAARLGA-----------------------ELRNASLRMFGLRVEDEGNYT 95
Query: 312 CTA-TNSLGTAETKCKLTVRSTP 333
C T G+ L V + P
Sbjct: 96 CLFVTFPQGSRSVDIWLRVLAKP 118
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 72.5 bits (178), Expect = 3e-16
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 182 PPDTAMTPPQFA-NKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
P P + +++ G + P + WT+ S +D
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-- 59
Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
NG L I+ V P D G YVCT +N + L
Sbjct: 60 -FNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 57.1 bits (138), Expect = 8e-11
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 2 QNVIKVKVGST----------KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKP 50
Q V+ G+ P T+ W + N +L R +G + I + +P
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDFNG--ILTIRNVQP 71
Query: 51 EDSGEYKCVATNKHGTDETNCVVIVE 76
D+G Y C +N D+ + V+
Sbjct: 72 SDAGTYVCTGSNMFAMDQGTATLHVQ 97
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 73.9 bits (181), Expect = 8e-16
Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 42/172 (24%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-----------------GVAS 246
G ++L+ + W + Q N K G
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL-------------------- 286
L I+ + ED Y+C + + NS L
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 129
Query: 287 -----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
K G +L + ++ +D G + CT + E K + V +
Sbjct: 130 QCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 60.4 bits (146), Expect = 5e-11
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDE 257
D + GQ L L+ P V +L + ++ +D
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----------KTLSVSQLELQDS 155
Query: 258 GVYVCTATNSLGTAETKCKLT 278
G + CT + E K +
Sbjct: 156 GTWTCTVLQNQKKVEFKIDIV 176
Score = 51.1 bits (122), Expect = 7e-08
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P+V+ + + ++S + + +DSG + C E
Sbjct: 124 GSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 73 VIV 75
++V
Sbjct: 175 IVV 177
Score = 46.9 bits (111), Expect = 1e-06
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 27/104 (25%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNREL------------------SKRDYS 33
M+ V+ K G T K W N+
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 34 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77
+ G + I + K EDS Y C ++ + + +
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 76.3 bits (187), Expect = 9e-16
Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 32/263 (12%)
Query: 26 ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIVESE---EES 81
+R + S ++ + + ED G Y C AT G E+ + V ++
Sbjct: 77 PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE 136
Query: 82 KEQQELAHNFLYSGDRKYIE---KHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL 138
Q L + +P + + + + T T +S
Sbjct: 137 GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRY 196
Query: 139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIM--PPDTAMTPPQFANKL 196
S + + + + + + L + P+ +
Sbjct: 197 RLVPSREAHQ-----QSLACIV------NYHMDRFKESLTLNVQYEPEVTIEGFD----- 240
Query: 197 TDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE 255
+ L+ +P WT L +
Sbjct: 241 -GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYS 294
Query: 256 DEGVYVCTATNSLGTAETKCKLT 278
G Y+C ATN +GT + ++
Sbjct: 295 LAGTYICEATNPIGTRSGQVEVN 317
Score = 68.2 bits (166), Expect = 4e-13
Identities = 26/211 (12%), Positives = 51/211 (24%), Gaps = 45/211 (21%)
Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTK 225
+ +R ++ P + Q L K D + L + G P VSW
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQ--AVLRAKKGQDDKVLVATCTSANGKPPSVVSWET 172
Query: 226 NGQPLNSSNILDLKYKNGVAS--LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----- 278
+ + ++ + C + + L
Sbjct: 173 RLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP 232
Query: 279 -----PLNSSNIL---DLK----------------YKNGVA-----------SLQIQEVF 303
+ + L D+K + +
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292
Query: 304 PEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334
G Y+C ATN +GT + ++ + A
Sbjct: 293 YSLAGTYICEATNPIGTRSGQVEVNITEAAA 323
Score = 49.0 bits (116), Expect = 8e-07
Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 13 KPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
PP T W N L K + +G Y C ATN GT
Sbjct: 259 NPPATEYHWTTLNGSLPKG----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314
Query: 72 VVIVE 76
V +
Sbjct: 315 EVNIT 319
Score = 42.8 bits (100), Expect = 1e-04
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 37/150 (24%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP----RVSWTKNGQPLNSSNILDLKYKNGV 244
P Q G + L +V+W K+ +
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN----------- 62
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFP 304
V S+G + + L+ ++++ +
Sbjct: 63 ----------------VAIYNPSMGV-----SVLAPYRERVEFLRPSFTDGTIRLSRLEL 101
Query: 305 EDEGVYVCTA-TNSLGTAETKCKLTVRSTP 333
EDEGVY+C T G E++ LTV + P
Sbjct: 102 EDEGVYICEFATFPTGNRESQLNLTVMAKP 131
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 71.6 bits (175), Expect = 2e-15
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKN---------GQPLNSSNI 235
+ F K T+ G+ + A VK + +P + W K G+ L
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + +QI + G Y C T L
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 69.6 bits (170), Expect = 8e-15
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 6 KVKVGSTKPPPTVKWYKGN----------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
KVK PT+KW+KG K + M+II K +G
Sbjct: 30 KVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 89
Query: 56 YKCVATNKHGTDETNCVVIVESEEESKEQQE 86
Y+C T K D + + V + +
Sbjct: 90 YRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 70.5 bits (173), Expect = 2e-15
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 189 PPQFA--NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
P T + + L+ + + +W K+GQ + S +L +K
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAE 272
L + E +D G + C
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFFG 92
Score = 64.0 bits (156), Expect = 4e-13
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
++ WYK +++ + + + + K +DSGE++C
Sbjct: 35 SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAF 90
Query: 71 CVVIVE 76
V V+
Sbjct: 91 FGVTVQ 96
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 72.8 bits (178), Expect = 2e-15
Identities = 30/182 (16%), Positives = 45/182 (24%), Gaps = 57/182 (31%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDE 257
D G + L+ + W K G L + + + +
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQW 61
Query: 258 GVYVCTATNSLG--------------------------TAETKCK--------------- 276
G Y C TA CK
Sbjct: 62 GEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 277 ------LTPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTV 329
S + + G + L I+ + E D G Y C T+S G+ + L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Query: 330 RS 331
RS
Sbjct: 182 RS 183
Score = 57.0 bits (137), Expect = 7e-10
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPL------NSSNILDLKYK 241
PP+ + + I++G+ L + P +W K S + +
Sbjct: 83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 242 NGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLT 278
G + L I+ + E D G Y C T+S G+ + L
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 51.2 bits (122), Expect = 6e-08
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 8 KVGSTKPPPTVKWYKGNREL-------SKRDYSMSYSDGVVSMEIIDCKPE-DSGEYKCV 59
K S P WYK S+ + +S S G + I + E D G+Y+C
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Query: 60 ATNKHGTDETNCVVIVES 77
T+ G+D+ + V S
Sbjct: 166 GTSSKGSDQAIITLRVRS 183
Score = 45.8 bits (108), Expect = 4e-06
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 6/60 (10%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
S +W KG L + E + GEY CV +
Sbjct: 24 DSATEVTGHRWLKGGVVLKEDALPGQ------KTEFKVDSDDQWGEYSCVFLPEPMGTAN 77
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 74.4 bits (182), Expect = 5e-15
Identities = 50/391 (12%), Positives = 99/391 (25%), Gaps = 93/391 (23%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYKGNREL------------------SKRDYSM 34
+ V+ K G T K W N+
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 35 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV-VIVESEEESKEQQELAHNFLY 93
+ G + I + K EDS Y C ++ + + S+ + Q L
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES 120
Query: 94 SGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT--------DDTGRTTTQMSTLSSNYSSS 145
+P++ K+ T D+G +
Sbjct: 121 PPG---------SSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG-----------TW--- 157
Query: 146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
T KK+ +++ ++ + S KE + F T + +
Sbjct: 158 TCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKE----GEQVEFS--FPLAFTVEKLTGSG 211
Query: 206 CLDLSAVVKGDPEPRVSWT-KNGQPLNSSNILDLKY---KNGVASLQIQEVFP--EDEGV 259
L A + +++ KN + D K K L + + P G
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 260 YVCTATNSLGTAETK----------------CKLTPLNSSNILDLKYKNGVAS-----LQ 298
G + C++ S ++ + +
Sbjct: 272 LTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
V + G++ C ++S G + + V
Sbjct: 332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 68.3 bits (166), Expect = 5e-13
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 42/172 (24%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-----------------GVAS 246
G ++L+ + W + Q N K G
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTPLNSSNIL------------------- 286
L I+ + ED Y+C + + LT + +++L
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 128
Query: 287 -----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
K G +L + ++ +D G + CT + E K + V +
Sbjct: 129 QCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 73.5 bits (180), Expect = 5e-15
Identities = 29/199 (14%), Positives = 49/199 (24%), Gaps = 58/199 (29%)
Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVAS 246
+ + + + Q L + E VS + G+PL +G
Sbjct: 89 ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--- 145
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
I Y C+A +
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 275 --C------------------KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 314
C KL S+ + +Y+ V +L + +V + G Y C A
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK-VLTLNLDQVDFQHAGNYSCVA 264
Query: 315 TNSLGTAETKCKLTVRSTP 333
+N G T V +
Sbjct: 265 SNVQGKHSTSMFFRVVESA 283
Score = 63.1 bits (153), Expect = 2e-11
Identities = 26/194 (13%), Positives = 39/194 (20%), Gaps = 53/194 (27%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
A + P + + + G + L V G V W P L +
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSS 51
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK------------------------------C 275
L ++ G Y CT C
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111
Query: 276 KLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCTATNSLGTAE 322
LT + L G I Y C+A
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVM 171
Query: 323 TKC-KLTVRSTPAA 335
+ +L V+
Sbjct: 172 SISIRLKVQKVIPG 185
Score = 51.1 bits (122), Expect = 2e-07
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 14 PPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
V N +L + D+ + V+++ + + +G Y CVA+N G T+
Sbjct: 215 VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS 274
Query: 71 CVVIV 75
V
Sbjct: 275 MFFRV 279
Score = 44.6 bits (105), Expect = 2e-05
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ V + R + S+S I K S +Y+C A
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSALMGGRKV 170
Query: 68 ETNCVVI 74
+ + +
Sbjct: 171 MSISIRL 177
Score = 43.8 bits (103), Expect = 5e-05
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 17 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
+V+W S S + + +++G Y+C + V+
Sbjct: 31 SVEWDGPPSPHWTLYSDGSSS----ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK 86
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 73.2 bits (179), Expect = 6e-15
Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 71/283 (25%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
V G++ L+ + S + + + E + C + + ET
Sbjct: 33 VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 92
Query: 73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTT 132
V + + PAP +I T+ E+ G
Sbjct: 93 VTI---------------------------YSFPAPNVILTKPEVSE---------GTEV 116
Query: 133 T--------QMSTLSSNYSSSTNNATSPSKKITRRMNSI-------LDTDSPSRSRSTTK 177
T TL+ + K T N L+ ++ T+
Sbjct: 117 TVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 176
Query: 178 ELIMPPDTAMTPPQF--ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI 235
EL + P+ + + T + G+P P + K+G
Sbjct: 177 EL-----RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----- 226
Query: 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + V + EG Y+C A ++ G + +
Sbjct: 227 --------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261
Score = 53.9 bits (129), Expect = 2e-08
Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 51/163 (31%)
Query: 212 VVKGDP-------EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264
V +G PR T NG P A L ++ ++ + C+A
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSA 161
Query: 265 TNSLGTAETKCKLT----------------------PLNSSNILDLK-----------YK 291
T + T P NS + K
Sbjct: 162 TLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 221
Query: 292 NGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTVRS 331
+G L I E + EG Y+C A ++ G + + V S
Sbjct: 222 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 48.1 bits (114), Expect = 1e-06
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 14 PPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
P P +K K G L E + + G Y C A + G
Sbjct: 213 PLPELKCLKDGTFPLP-------------IGESVTVTRDLEGTYLCRARSTQGEVTREVT 259
Query: 73 VIVES 77
V V S
Sbjct: 260 VNVLS 264
Score = 47.4 bits (112), Expect = 2e-06
Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 46/201 (22%)
Query: 180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNIL 236
++P TPPQ + + ++ + + G E +V Q LN +
Sbjct: 1 VLPA----TPPQLV---SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 53
Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----PLNSSNILDLKYKN 292
+ AS+ + E C + ET +T P + + +
Sbjct: 54 GNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 112
Query: 293 G---------------------------VASLQIQEVFPEDEGVYVCTATNSLG----TA 321
G A L ++ ++ + C+AT +
Sbjct: 113 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 172
Query: 322 ETKCKLTVRSTPAANLGKSPS 342
+L V P + P
Sbjct: 173 NQTRELRVLYGPRLDERDCPG 193
Score = 27.3 bits (60), Expect = 6.8
Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 9/55 (16%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
P V + + + ++ + C AT +
Sbjct: 121 EAHPRAKVTLNGVPAQPL---------GPRAQLLLKATPEDNGRSFSCSATLEVA 166
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 72.9 bits (178), Expect = 1e-14
Identities = 41/291 (14%), Positives = 69/291 (23%), Gaps = 41/291 (14%)
Query: 7 VKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE-YKCVATNKHG 65
+ V W K + R + +G + I + DS Y C T K+G
Sbjct: 59 LSHRYNDKDNVVNWEKIGKTR--RPLNRRVKNG--DLWIANYTSNDSHRRYLCTVTTKNG 114
Query: 66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTR-----QEIKSS 120
V + S + + + I A QE+
Sbjct: 115 DCVQGIVRSHIRKPPSCIPETYELG-THDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173
Query: 121 YSSHTDDTGRTTTQMSTLSS--NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTK 177
+ ++ L Y + I IL R
Sbjct: 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK-- 231
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP----RVSWTKNGQPLNSS 233
LI+ P +T G+ +++ + W +
Sbjct: 232 -LILDPKINVTI--------------GEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 234 N-----ILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTAETKCKLT 278
+ IL A+L + V E G Y C N +
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 56.8 bits (136), Expect = 2e-09
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
+ + K + WYK N+EL S S ++ I + + EDSG Y C
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ--NLIIHNPELEDSGRYDCYVHYD 204
Query: 64 HGTDETNCVVIV 75
+ + VV
Sbjct: 205 DVRIKNDIVVSR 216
Score = 45.6 bits (107), Expect = 1e-05
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 13 KPPPTVKWYKGNRELSKRDYSM------SYSDGVVSMEIIDCKPEDSGE-YKCVATNKHG 65
+ W + + D+ + S ++ + E G Y C N +
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
Query: 66 TDETNCVVIVE 76
V++E
Sbjct: 319 DKTLTTTVVLE 329
Score = 33.3 bits (75), Expect = 0.12
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 296 SLQIQEVFPEDEG-VYVCTATNSLGTAETKC-KLTVRSTP 333
L I D Y+CT T G + +R P
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPP 129
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 71.9 bits (176), Expect = 2e-14
Identities = 32/205 (15%), Positives = 52/205 (25%), Gaps = 60/205 (29%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQ 228
RS E+ + +G+ L L K V + +NG+
Sbjct: 71 GRSDPIQLEIHRGWLLLQVSSR--------VFTEGEPLALRCHAWKDKLVYNVLYYRNGK 122
Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
+ N +L I + G Y C+ +T
Sbjct: 123 AFKFF------HWNS--NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174
Query: 279 ------PLNSSNILDL------------------KYKNGV--------ASLQIQEVFPED 306
PL N++ L Y + QI ED
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRED 234
Query: 307 EGVYVCTATNSLGTAETK-CKLTVR 330
G+Y C A G + +L ++
Sbjct: 235 SGLYWCEAATEDGNVLKRSPELELQ 259
Score = 71.1 bits (174), Expect = 3e-14
Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 44/172 (25%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
++ + + L V P W NG +S S +I D
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVND 59
Query: 257 EGVYVCTATNSLGTAETKCKLTP----LNSSNI-------LDLK--------------YK 291
G Y C S + + ++ L S+ L L+ Y+
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119
Query: 292 NGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA 335
NG A +L I + G Y C+ +TV+ A
Sbjct: 120 NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPA 171
Score = 64.9 bits (158), Expect = 3e-12
Identities = 40/273 (14%), Positives = 68/273 (24%), Gaps = 50/273 (18%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+V + +W+ S I DSGEY+C +D
Sbjct: 24 EVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITSASVNDSGEYRCQRGLSGRSD 74
Query: 68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTR-----QEIKSSYS 122
+ + G+ + H + + K +
Sbjct: 75 PIQLEIHRGWLLLQVSSRVFT-----EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW 129
Query: 123 SHTDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIM 181
+ +T + Y S S I+ T KEL
Sbjct: 130 NSNLTILKTNISHN---GTYHCSGMGKHRYTSAGIS----------------VTVKELFP 170
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
P + + +G + LS K + + S L+ +
Sbjct: 171 APVLNASVTS--------PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKT---LRGR 219
Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
N + QI ED G+Y C A G +
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 49.5 bits (118), Expect = 5e-07
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
++ K V +Y+ + ++ + + + +G Y C K
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTN-------ISHNGTYHCSGMGK 153
Query: 64 HGTDETNCVVIVE 76
H V V+
Sbjct: 154 HRYTSAGISVTVK 166
Score = 39.9 bits (93), Expect = 7e-04
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 7 VKVGSTKPPPTVKW--YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
K+ +P + + Y G++ L R+ S Y I+ + EDSG Y C A +
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ-------ILTARREDSGLYWCEAATED 246
Query: 65 GT 66
G
Sbjct: 247 GN 248
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 67.7 bits (165), Expect = 2e-14
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 6 KVKVGSTKPPPTVKWYKGN----------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
+V S PP VKW+KG Y + + + I D +P +G
Sbjct: 27 RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGS 86
Query: 56 YKCVATNKHGTDETNCVVIV 75
Y+C + K D +N + V
Sbjct: 87 YRCEVSTKDKFDCSNFNLTV 106
Score = 66.9 bits (163), Expect = 3e-14
Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKN---------GQPLNSSNIL 236
F + D + G + SA V G P V W K GQ L +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
D K + L I + P G Y C + + LT
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 68.4 bits (167), Expect = 2e-14
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSN-----ILDLKYKN 242
PP + + G+ + ++ P P R++W+ L S + + +
Sbjct: 14 PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 243 GVAS-LQIQEVFPEDEG-VYVCTATNSLGTAETKCKLT 278
GV S L I + D +Y CTA NS G+ +L
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 53.4 bits (128), Expect = 4e-09
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYS------MSYSDGVVS-MEIIDCKPED-SGE 55
IK + ST PP + W L +S +GV+S + I + D
Sbjct: 32 QIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91
Query: 56 YKCVATNKHGTDETNCVVIVESEEES 81
Y C A N G+D + + E S
Sbjct: 92 YNCTAWNSFGSDTEIIRLKEQGSEMS 117
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 67.9 bits (165), Expect = 4e-14
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 26/146 (17%)
Query: 189 PPQF-----ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
PP+ + G L L + GDP P V W K N +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKA---------- 62
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVF 303
+ PED G + ET+ ++ + + + ++
Sbjct: 63 --PARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKD---------RSIFTVEGAE 111
Query: 304 PEDEGVYVCTATNSLGTAETKCKLTV 329
EDEGVY T N +G + + V
Sbjct: 112 KEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 59.8 bits (144), Expect = 3e-11
Identities = 20/114 (17%), Positives = 30/114 (26%), Gaps = 39/114 (34%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNRELSKRD-------------------- 31
+ + I V G+ P PTV W K + +K
Sbjct: 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 32 ----------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
+ + + + ED G Y N G D+ N V V
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 69.7 bits (170), Expect = 4e-14
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
P D + + G L +G + W K + + +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VI 178
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
++ E G Y CT N +G+ + +L
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 52.8 bits (126), Expect = 3e-08
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 13 KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
P +W K + + + + V+S + + E SG Y C N+ G+D+
Sbjct: 149 SLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS--VKNASSEYSGTYSCTVQNRVGSDQCML 206
Query: 72 VVIV 75
+ V
Sbjct: 207 RLDV 210
Score = 48.5 bits (115), Expect = 6e-07
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 26/120 (21%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
+ + W + + + + Y +++
Sbjct: 29 EDQGPLDIEWLISPSDNQIVDQVIILYSGD-------KIYDNYYPDLKGRVH-------- 73
Query: 274 KCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
K+G AS+ + + D G Y C + G A K LTV P
Sbjct: 74 -----------FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
Score = 40.1 bits (93), Expect = 4e-04
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 38/112 (33%)
Query: 2 QNVIKVKVGST-------------KPPPTVKWYKGNRELSKRDYSMSYSD---------- 38
+ I+ G T + P ++W + D +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 39 ---------------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
G S+ + + + D G Y+C G ++ V
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 67.9 bits (165), Expect = 4e-13
Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 57/194 (29%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPR---VSWTKNGQPLNSSNILDLKYKNGV 244
+ + + G L+A V GD P P +WTK+ QP ++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------------------------- 277
A+L + + E+ G Y T ++ + ++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 278 -----------TPLNSSNILDLKYKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTA 321
TP ++ + K + IQE + GVY +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDS 171
Query: 322 ETKCKLTVRSTPAA 335
+
Sbjct: 172 AASASTKIMLATMN 185
Score = 49.4 bits (117), Expect = 6e-07
Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 46/291 (15%)
Query: 4 VIKVKVGSTKPPP---TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
+ V +P P T W K ++ + ++ + D E++G YK
Sbjct: 21 TLTATVAGDEPLPSNLTYTWTKDDQPHE---------NNTATLTVADATSENAGSYKVTV 71
Query: 61 TNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKS 119
+ V +E E E H ++ S + ++ + T +
Sbjct: 72 QDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG-KTPADNYEL 130
Query: 120 SYSSHTDDTGRTTTQMSTLSS-------NYSSSTNNATSPSKKITRRMNSILDTDSPSRS 172
YS + TTQ T+ Y+ DS + +
Sbjct: 131 HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE---------------SEDSAASA 175
Query: 173 RSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT----KNGQ 228
+ M D + + + +++ D+ G P + + + GQ
Sbjct: 176 STKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQ 235
Query: 229 PLNSSNILDLKYKNGVAS------LQIQEVFPEDEGVYVCTATNSLGTAET 273
+ ++ S L + +D + C A +
Sbjct: 236 LSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDE 286
Score = 49.1 bits (116), Expect = 8e-07
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 19/100 (19%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVK---GDPEP-----RVSWTKNGQPLNSSNILDL 238
+ + ++L A VK G SW+K ++++
Sbjct: 90 AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT----- 144
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ IQE + GVY +
Sbjct: 145 ------QDITIQEFTADKNGVYTVKVWGESEDSAASASTK 178
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 65.9 bits (160), Expect = 2e-12
Identities = 32/290 (11%), Positives = 67/290 (23%), Gaps = 46/290 (15%)
Query: 7 VKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
V+ G T P V+W + + + +G Y C +
Sbjct: 24 VEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKN------EWIQEKAEATRTGTYTCSNS 77
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYI--EKHIRPAPAIITTR---QE 116
N + V + + + L F + +
Sbjct: 78 NGLTSSIY--VFVRDPAKLFLVGLPL---FGKEDSDALVRCPLTDPQVSQYSLIECDGKS 132
Query: 117 IKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTT 176
+ + + + T + + + A + ++ ++
Sbjct: 133 LPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK------ 186
Query: 177 KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNS--- 232
P + T + G + + W K
Sbjct: 187 -----------AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQ 235
Query: 233 ----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
S +L I +D GV++C A N+ G+A L
Sbjct: 236 VKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 49.3 bits (117), Expect = 7e-07
Identities = 26/197 (13%), Positives = 52/197 (26%), Gaps = 57/197 (28%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNS--------------- 232
P + + + + + S + +G+ L +
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150
Query: 233 -----------------------SNILDLKYKNGVASLQIQEVFPEDEGVYV-------C 262
S+ LK + + ++ + V + C
Sbjct: 151 NVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVC 210
Query: 263 TATNS----------LGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
T + + NS + D Y+ +L I +D GV++C
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE-RQETLTISSARVDDSGVFMC 269
Query: 313 TATNSLGTAETKCKLTV 329
A N+ G+A L V
Sbjct: 270 YANNTFGSANVTTTLKV 286
Score = 49.0 bits (116), Expect = 8e-07
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV--------SMEIIDCKPEDSGEYKCV 59
+ W K N + S ++ I + +DSG + C
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Query: 60 ATNKHGTDETNCVVIV 75
A N G+ + V
Sbjct: 271 ANNTFGSANVTTTLKV 286
Score = 45.5 bits (107), Expect = 1e-05
Identities = 27/188 (14%), Positives = 46/188 (24%), Gaps = 53/188 (28%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
+PP ++ ++ G L L+ + V WT N
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVE-------NKKNE 58
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAET--------------------------KCKLTPL 280
++ G Y C+ +N L ++ +C LT
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDP 118
Query: 281 NSSNILDLKYKNGVA-------------SLQIQEV-FPEDEGVYVCTATNSLGTAETKC- 325
S L +G + + I+ V C A +
Sbjct: 119 QVSQYS-LIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKF 177
Query: 326 KLTVRSTP 333
L VR
Sbjct: 178 TLKVREAI 185
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 66.9 bits (162), Expect = 3e-12
Identities = 37/287 (12%), Positives = 66/287 (22%), Gaps = 27/287 (9%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHG 65
S+ V + + + + G S+ I + ED+G Y C A +
Sbjct: 255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314
Query: 66 TD--ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKSSY 121
+ EES + +G + + + +I +
Sbjct: 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374
Query: 122 SSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS--------PSRSR 173
+ S T +N + D+
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNG---TFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--- 230
TT E+ + C + W G
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH-FPCKFSSYEKYWCKWNNTGCQALPS 490
Query: 231 ----NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
S ++ + + SL + V DEG Y C ET
Sbjct: 491 QDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537
Score = 62.7 bits (151), Expect = 5e-11
Identities = 46/442 (10%), Positives = 91/442 (20%), Gaps = 117/442 (26%)
Query: 11 STKPPPTVK-WYKGNRELSKRDYSMSYS-----------------DGVVSMEIIDCKPED 52
T+ K YK S + S+ I + D
Sbjct: 137 KTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSD 196
Query: 53 SGEYKCVATNKHGTDETN----CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP 108
+G+Y C A + +++ N + + + + + + K +
Sbjct: 197 AGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256
Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS 168
+ + + GR S + + + D+
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRI------------LLNPQDKDGSFSVV--ITGLRKEDA 302
Query: 169 --------PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
+ T G + +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362
Query: 221 VSWTKNGQPLNSSNILDLKY-------------------KNGVASLQIQEVFPEDEGVYV 261
+ + + + L NG ++ + ++ D G Y
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Query: 262 CTATNSLG----------------------------TAETKCKLTP-------------- 279
C T + C
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482
Query: 280 -----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKL 327
S ++ + + SL + V DEG Y C ET +
Sbjct: 483 TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Query: 328 TVRSTPAANLGKSPSKESDKAP 349
V AA ++D AP
Sbjct: 543 AVEERKAAGSRDVSLAKADAAP 564
Score = 53.8 bits (128), Expect = 4e-08
Identities = 34/290 (11%), Positives = 73/290 (25%), Gaps = 25/290 (8%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHG 65
+ SK + ++ G + I +DSG YKC
Sbjct: 40 QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99
Query: 66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT 125
+ + V ++ L A + ++I
Sbjct: 100 GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVI 159
Query: 126 DDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS----------PSRSRST 175
D +G + + +N + +D+ + ++
Sbjct: 160 DSSGYVN---PNYTGRIRLDIQGTGQLLFSVV--INQLRLSDAGQYLCQAGDDSNSNKKN 214
Query: 176 TKELIMPPDTAMTPPQFANKLT---DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS 232
++ P+ + +T + V G+ +
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPA 274
Query: 233 SN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
+L+ + K+G S+ I + ED G Y+C A + E
Sbjct: 275 FEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAW 324
Score = 43.1 bits (100), Expect = 1e-04
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 18/162 (11%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQP 229
++ P N T+D G+ + ++ K + + + + G
Sbjct: 95 GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY 154
Query: 230 L---------------NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
+ + S+ I ++ D G Y+C A + + +
Sbjct: 155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214
Query: 275 CKLTPLNSSNILDLKYKNGVASLQIQ-EVFPEDEGVYVCTAT 315
L L L + G + + ++C +
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256
Score = 32.3 bits (72), Expect = 0.26
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+NG + I ++ +D G Y C + L V P
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP 113
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 63.5 bits (154), Expect = 5e-12
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGVA 245
P + D L ++ V P P V W + + +G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163
Query: 246 SLQI-QEVFPEDEGVYVCTATNSLGTAE 272
S+ + + C N A
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 60.0 bits (145), Expect = 6e-11
Identities = 23/174 (13%), Positives = 35/174 (20%), Gaps = 64/174 (36%)
Query: 213 VKGDPEPRVSWTKNGQPLNS-----------------SNILDLKYKNGVASLQIQEVFPE 255
V PE VSW K G D+ L +
Sbjct: 18 VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 77
Query: 256 DEGVYVCTATNSLGTAETKCKLT----------------PLNSSNILD------------ 287
+G Y+C + L+ P S +
Sbjct: 78 HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQ 137
Query: 288 ------------------LKYKNGVASLQI-QEVFPEDEGVYVCTATNSLGTAE 322
+K K+G S+ + + C N A
Sbjct: 138 WLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 45.4 bits (107), Expect = 6e-06
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 14 PPPTVKWYKGNRELSKRDYS----MSYSDGVVSMEII-DCKPEDSGEYKCVATNKHGTDE 68
P P V+W + M DG +S+ + CV N
Sbjct: 132 PHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Query: 69 TNCVVIVESE 78
V S+
Sbjct: 192 GVYVSGYLSQ 201
Score = 42.3 bits (99), Expect = 8e-05
Identities = 10/85 (11%), Positives = 17/85 (20%), Gaps = 18/85 (21%)
Query: 11 STKPPPTVKWYKGNRELSK------------------RDYSMSYSDGVVSMEIIDCKPED 52
S P V W+K + + + S + +
Sbjct: 19 SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78
Query: 53 SGEYKCVATNKHGTDETNCVVIVES 77
G Y C + V
Sbjct: 79 DGNYLCRMKLGETEVTKQEHLSVVK 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 64.5 bits (157), Expect = 1e-11
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQ 250
K + G L + K +V + + + + + + + +NG L +
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFK 306
Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLT 278
+V ED GVY C A +L
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELK 334
Score = 50.6 bits (121), Expect = 3e-07
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+ V N ++ + + S S + + ED G Y C A + + +
Sbjct: 271 KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS 330
Query: 71 CVVIV 75
+ V
Sbjct: 331 VELKV 335
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 62.2 bits (150), Expect = 2e-11
Identities = 15/141 (10%), Positives = 29/141 (20%), Gaps = 29/141 (20%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
+ +D+G + ++ V+W + +
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEG 308
I E G + G +L I+ D G
Sbjct: 196 ITWFSSEIAGRASFS-----------------------------GARNLVIRAAKITDAG 226
Query: 309 VYVCTATNSLGTAETKCKLTV 329
C G + T+
Sbjct: 227 RVWCELATGQGELDADRSSTI 247
Score = 46.8 bits (110), Expect = 4e-06
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 26/124 (20%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
P +SW K P S+ + Y + + +V + + +
Sbjct: 31 DTQPPVISWLKGASPDRSTKVFKGNYN-----------WQGEGLGFVESDSYKESFGDFL 79
Query: 275 CKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS-----LGTAETKCKLTV 329
+ + N +L++ V P+D G Y C G L V
Sbjct: 80 GRASVAN----------LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 330 RSTP 333
Sbjct: 130 TGHT 133
Score = 43.0 bits (100), Expect = 6e-05
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 31/103 (30%)
Query: 4 VIKVKVGST---------KPPPTVKWYKGNREL--------------SKRDYSMSYSD-- 38
V++V G+ V WY G ++ + S+
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204
Query: 39 ------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
G ++ I K D+G C G + + +
Sbjct: 205 GRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 36.0 bits (82), Expect = 0.011
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 30/94 (31%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSY----------------------------- 36
++ + PP + W KG
Sbjct: 25 SYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84
Query: 37 -SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
+ ++ + P+D G Y C E
Sbjct: 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF 118
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 60.1 bits (145), Expect = 8e-11
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
Q ++T+ T+ + + L+ + D + W N Q L + + L N
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS--I 164
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK 274
L+I + ED G Y C +N + +
Sbjct: 165 LRIDPIKREDAGEYQCEISNPVSVRRSN 192
Score = 53.9 bits (129), Expect = 1e-08
Identities = 30/186 (16%), Positives = 42/186 (22%), Gaps = 63/186 (33%)
Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLK------------------YKNGVASLQIQ 250
L +W K I Y NG SL Q
Sbjct: 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQ 76
Query: 251 EVFPEDEGVYVCTATNSLGTAETK---------CKLTPLNSSN---------ILDLK--- 289
+ +D GVY T+ L +N L
Sbjct: 77 MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND 136
Query: 290 -------YKNGVA--------------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKL 327
N + L+I + ED G Y C +N + + KL
Sbjct: 137 IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196
Query: 328 TVRSTP 333
+ P
Sbjct: 197 DIIFDP 202
Score = 46.6 bits (110), Expect = 3e-06
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
S ++W ++ L + M+ S + I K ED+GEY+C +N +N
Sbjct: 134 SNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192
Score = 37.0 bits (85), Expect = 0.005
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 20/150 (13%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRD------------YSMSYSDGVV-----SME 44
NV+ + WYKGN ++ +YS + S+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 45 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI 104
+D G Y T+++ V + ++ ++ + + D +
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS 134
Query: 105 RPAPAIIT---TRQEIKSSYSSHTDDTGRT 131
A I Q ++ +
Sbjct: 135 NDIGANIQWLFNSQSLQLTERMTLSQNNSI 164
Score = 36.2 bits (83), Expect = 0.008
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS 342
Y NG SL Q + +D GVY T+ P +
Sbjct: 68 YSNG--SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT 118
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 59.4 bits (144), Expect = 8e-11
Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 45/168 (26%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
+ + L+ PE + W NG + + + D
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNND 62
Query: 257 EGVYVCTATNSLGTAE-----------TKCKLTPLNSSNILDLK--------------YK 291
G Y C + + + + L+ ++
Sbjct: 63 SGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ 122
Query: 292 NGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 330
NG + + I + G Y CT +K +TV+
Sbjct: 123 NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 44.8 bits (106), Expect = 8e-06
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
KP V +++ + ++S + SG+Y C + +
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLDPTFSIPQAN-------HSHSGDYHCTGNIGYTLFSSK 163
Query: 71 CVVI 74
V I
Sbjct: 164 PVTI 167
Score = 39.4 bits (92), Expect = 5e-04
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 9/63 (14%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ + +++W+ + DSGEY C +D
Sbjct: 27 QGARSPESDSIQWFHNGNLIPTHTQPSY---------RFKANNNDSGEYTCQTGQTSLSD 77
Query: 68 ETN 70
+
Sbjct: 78 PVH 80
Score = 34.8 bits (80), Expect = 0.021
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 8/50 (16%)
Query: 290 YKNGVA------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+ NG + D G Y C + + LTV
Sbjct: 40 FHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPV--HLTVLFEW 87
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 58.8 bits (142), Expect = 1e-10
Identities = 33/172 (19%), Positives = 46/172 (26%), Gaps = 47/172 (27%)
Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
I G+ + L+ E W NG +N +SL I ED
Sbjct: 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62
Query: 257 EGVYVCTATNSLGTAETK--------------------------CKLTPLNSSNILDLKY 290
G Y C + C N + Y
Sbjct: 63 SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH-GWRNWDVYKVIYY 121
Query: 291 KNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVRSTP 333
K+G A ++ I ED G Y CT E++ +TV P
Sbjct: 122 KDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 44.5 bits (105), Expect = 1e-05
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
V +YK L Y + ++ I + EDSG Y C E+
Sbjct: 111 RNWDVYKVIYYKDGEALK-----YWYENH--NISITNATVEDSGTYYCTGKVWQLDYESE 163
Query: 71 CVVI 74
+ I
Sbjct: 164 PLNI 167
Score = 39.5 bits (92), Expect = 6e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ + KW+ + + S++ I++ K EDSGEYKC + ++
Sbjct: 27 NGNNFFEVSSTKWFHNGSLSEETNSSLN---------IVNAKFEDSGEYKCQHQQVNESE 77
Query: 68 ETNCVVIVES 77
V +
Sbjct: 78 PVYLEVFSDW 87
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 57.4 bits (138), Expect = 1e-10
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKY 240
D ++P + G+ L L+ + + + W +++
Sbjct: 8 YDVVLSPSH------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61
Query: 241 K--------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
K +++L I V D+G+Y C A++ L T + +
Sbjct: 62 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
Query: 3 NVIKVKVGST---------KPPPTVKWY-------KGNRELSKRDYSMSYSDGVV----S 42
+ I++ VG + + + +++L RD + +
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 43 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
+ I D G Y C A++ T + + V V
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 58.4 bits (141), Expect = 2e-10
Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 38/161 (23%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---------ASLQIQEVFPEDE 257
LD+ + D + W K + K +L+I+ + +D+
Sbjct: 19 LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78
Query: 258 GVYVCTATNSLGTAETKCKLT---------PLNSSNILDLK---------------YKNG 293
+Y + ++ G + P S ++ Y++G
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138
Query: 294 VA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+ + + CTA N + + ++
Sbjct: 139 KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 41.8 bits (98), Expect = 8e-05
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 14 PPPTVKWYKGNRELS----KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNK 63
+KW K + + +++ +++I K +D YK +
Sbjct: 29 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT 88
Query: 64 HGTDETNCVVIVE 76
G + + ++
Sbjct: 89 KGKNVLEKIFDLK 101
Score = 41.8 bits (98), Expect = 9e-05
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P + Y+ + L + S ++KC A NK + + V
Sbjct: 128 TDPELNLYQDGKHLKLSQ----------RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 39.1 bits (91), Expect = 8e-04
Identities = 5/36 (13%), Positives = 18/36 (50%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
+L+I+ + +D+ +Y + ++ G + ++
Sbjct: 66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 55.6 bits (133), Expect = 5e-10
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 4 VIKVKVGSTKPPPTVKWYKGN-RELSKRD---------YSMSYSDGVVSMEIIDCKPEDS 53
V KV PT+KW+KG EL + ++ + + V + I D
Sbjct: 33 VAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92
Query: 54 GEYKCVATNKHGTDETNCVVIVE 76
G Y+ K D + VE
Sbjct: 93 GYYRLEVKAKDTCDSCGFNIDVE 115
Score = 45.6 bits (107), Expect = 2e-06
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTK---------NGQP 229
F K +++ G+ + A V G +P + W K +G
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + L I +V D G Y +
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 58.6 bits (142), Expect = 1e-09
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPL-NSSNILDLK 239
Q +D+G + GDP P + W + SN
Sbjct: 384 RARIRDRKAQ------QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV 437
Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ +G +L+++ +D G Y+C A N+ G L
Sbjct: 438 FPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 45.9 bits (109), Expect = 1e-05
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 14 PPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
PPP + W + L + DG ++E+ + +D+G Y C+A N G D
Sbjct: 413 PPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMP 470
Query: 71 CVVIVES 77
+ V S
Sbjct: 471 AHLHVRS 477
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 58.2 bits (141), Expect = 1e-09
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
P D + +G +L VSW + + ++ +G
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L V +D G+Y C +NS+G L
Sbjct: 398 -TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Score = 46.7 bits (111), Expect = 7e-06
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 14 PPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
+V W N + + + SDG ++ + +D+G Y C+ +N G
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
Query: 70 NCVVIV 75
+ + V
Sbjct: 426 SATLNV 431
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 56.1 bits (134), Expect = 2e-09
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 4/134 (2%)
Query: 142 YSSSTNNATSPSKKITRRMNSILD--TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDK 199
Y + S ++ RM S D D+ + + + + K
Sbjct: 64 YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGV 259
G + L+ P + W N + + + + E G
Sbjct: 124 VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181
Query: 260 YVCTATNSLGTAET 273
YVC S
Sbjct: 182 YVCYPRGSKPEDAN 195
Score = 53.4 bits (127), Expect = 1e-08
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDET 69
P + W ++ + + + + + + E SG Y C D
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 48.7 bits (115), Expect = 5e-07
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
++W K+G+ + + + G+Y C + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Score = 41.8 bits (97), Expect = 1e-04
Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
+ W+K + + ++ + + G Y+C +
Sbjct: 28 EAKNITWFKDGKMIG------FLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYR 81
Query: 74 IVESEEESKE 83
+ +++ K+
Sbjct: 82 MGSADDAKKD 91
Score = 31.4 bits (70), Expect = 0.33
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTA 321
+ + G+Y C + +
Sbjct: 49 KKWNLGSNAKDPRGMYQCKGSQNKSKP 75
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 53.5 bits (128), Expect = 3e-09
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNG---- 243
PQ + ++ G + + + ++ W + + L + + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 244 ----VASLQIQEVFPEDEGVYVCTATNSLGTA 271
L+++ V EG Y C +N G++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
Score = 40.4 bits (94), Expect = 9e-05
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 10 GSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSME------IIDCKPEDSGEYKCVA 60
S+ P T W N L +Y+ + G ME + + + G Y+CV
Sbjct: 36 SSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVI 95
Query: 61 TNKHGTDETNCVVI 74
+N G+ + +
Sbjct: 96 SNHFGSSYSVXAXL 109
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 57.1 bits (138), Expect = 4e-09
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
+ P + D I +G+ +L + P V W + S + +G
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+L V D GVY C TN G + L
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Score = 47.8 bits (114), Expect = 3e-06
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 14 PPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
P +VKW N + S+ +DG ++ D+G Y C+ TN G
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDG--TLNFSHVLLSDTGVYTCMVTNVAGNSNA 435
Query: 70 NCVVIV 75
+ + V
Sbjct: 436 SAYLNV 441
Score = 47.4 bits (113), Expect = 4e-06
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+G +L V D GVY C TN G + L V +
Sbjct: 404 LNDG--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 55.0 bits (132), Expect = 4e-09
Identities = 19/179 (10%), Positives = 37/179 (20%), Gaps = 49/179 (27%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---------NILDLKYKNGVASLQIQEVFP 254
G + L + + + +L+ + G A I V
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 255 EDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQ-------------- 300
D G Y C + S +D + + ++Q
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVS 136
Query: 301 --------------------------EVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+ P+ + C N+ T + S
Sbjct: 137 WQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195
Score = 48.1 bits (114), Expect = 9e-07
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
+ + + + L+ +G P VSW P N
Sbjct: 92 WDYKYLTVKVKASYMRIDTRILEVPGTGEVQ------LTCQARGYPLAEVSWQNVSVPAN 145
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
+S+I + V S+ + P+ + C N+ T + P
Sbjct: 146 TSHIRTPEGLYQVTSVLR--LKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 45.4 bits (107), Expect = 6e-06
Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 25/167 (14%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSM----------SYSDGVVS 42
+ V V VGS+ + ++ + + + + D S+ G
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 43 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEK 102
I + DSG+Y+C+ D V V++ + + + +
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRI---LEVPGTGEVQLTC 125
Query: 103 HIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTN 147
R P + + ++ +SH S L S N
Sbjct: 126 QARGYPLAEVSWQNVSVPAN-TSHIRTPEGLYQVTSVLRLKPQPSRN 171
Score = 44.6 bits (105), Expect = 1e-05
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSME-IIDCKPEDSGEYKCVATNKHGTDETNCV 72
P V W + + + +G+ + ++ KP+ S + C+ N H + T+ +
Sbjct: 131 PLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAI 188
Query: 73 VIVESEEESK 82
+ S E K
Sbjct: 189 IDPLSRMEPK 198
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 52.1 bits (124), Expect = 4e-08
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
G + L+ G P SW PLN + + ++L + V +E
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK----VTNEGTTSTLTMNPVSFGNEH 67
Query: 259 VYVCTATNSLGTAETKCKLT 278
Y+CTAT E ++
Sbjct: 68 SYLCTATCESRKLEKGIQVE 87
Score = 44.8 bits (105), Expect = 1e-05
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 26/195 (13%)
Query: 2 QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 52
++ ++G + P W ++ ++ + +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGN 65
Query: 53 SGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPA 109
Y C AT + E V + S + E L +G ++ + P
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP--LEAGKPITVKCSVADVYPFDR 123
Query: 110 IITT----RQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT-RRMNSIL 164
+ +KS D T+ ++ + R I
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV-----LVCRAKLHID 178
Query: 165 DTDSPSRSRSTTKEL 179
+ DS R KEL
Sbjct: 179 EMDSVPTVRQAVKEL 193
Score = 42.8 bits (100), Expect = 5e-05
Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 9/113 (7%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNILDL--- 238
+ P+ ++ G+ + + V + K + S L+
Sbjct: 87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146
Query: 239 -KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKY 290
+ + V + V VC A + ++ T + L +
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS--VPTVRQAVKELQVYI 197
Score = 39.4 bits (91), Expect = 8e-04
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+ ++L + V +E Y+CTAT E ++ + S P
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFP 92
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 50.4 bits (120), Expect = 4e-08
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---------NGQPLNSSNILDLKY 240
N T+++GQ L L V + W L +S L +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
S+ + V +DEGVY C S + + K+
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVI 98
Score = 36.9 bits (85), Expect = 0.002
Identities = 12/96 (12%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYKGNREL----------SKRDYSMSYSDGVV 41
+ + V+ G T + +++W + + + + +S +
Sbjct: 8 TETI-TVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL 66
Query: 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77
S+ + + +D G YKC+ + + + V+++ +
Sbjct: 67 SITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLAT 102
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 51.4 bits (123), Expect = 5e-08
Identities = 22/165 (13%), Positives = 41/165 (24%), Gaps = 45/165 (27%)
Query: 200 TIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
++ + + L PE W N ++S +S I D G
Sbjct: 18 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSG 67
Query: 259 VYVCTATNSLGTAETKCKL-----------TPLNSSNILDLK--------------YKNG 293
Y C S + + ++ + + L+ +NG
Sbjct: 68 EYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG 127
Query: 294 VA--------SLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTV 329
I + +D G Y C +T+
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 47.2 bits (112), Expect = 1e-06
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWT 224
T+ + S E+ + P + + L K +V++
Sbjct: 73 TNLSTLSDPVQLEVHIGWLLLQAPRW--------VFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
+NG+ + + I + +D G Y C
Sbjct: 125 QNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGSKN 162
Score = 41.4 bits (97), Expect = 1e-04
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
V + + ++ ++ + I +DSG Y C +
Sbjct: 114 KNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 71 CVVIVESE 78
V I ++
Sbjct: 167 TVNITITQ 174
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ + + +W+ +S + S I DSGEY+C +D
Sbjct: 30 QGAYSPEDNSTQWFHNESLISSQASSYF---------IDAATVNDSGEYRCQTNLSTLSD 80
Query: 68 ETNCVV 73
V
Sbjct: 81 PVQLEV 86
Score = 32.9 bits (75), Expect = 0.080
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 8/50 (16%)
Query: 290 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+ N +S I D G Y C S + +L V
Sbjct: 43 FHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPV--QLEVHIGW 90
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 51.0 bits (122), Expect = 1e-07
Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 47/172 (27%)
Query: 200 TIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
+ + + L PE W N ++S +S I +D G
Sbjct: 18 RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSG 67
Query: 259 VYVCTATNSLGTAETK--------------------------CKLTPLNSSNILDLKYKN 292
Y C S + + C + + + +N
Sbjct: 68 EYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY-LQN 126
Query: 293 GV--------ASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTVRSTPAA 335
G + I + +D G Y C ++T+ A
Sbjct: 127 GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
Score = 47.2 bits (112), Expect = 2e-06
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 27/136 (19%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQ 228
+ S E+ + P + + L + +V++ +NG+
Sbjct: 77 TLSDPVQLEVHIGWLLLQAPRW--------VFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDL 288
+ + I + +D G Y C SS + +
Sbjct: 129 GRKYFH--------HNSDFYIPKATLKDSGSYFCRGLVGSKNV----------SSETVQI 170
Query: 289 KYKNGVASLQIQEVFP 304
G+A I FP
Sbjct: 171 TITQGLAVSTISSFFP 186
Score = 39.9 bits (93), Expect = 5e-04
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
V + + + ++ + + +DSG Y C +
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKAT-------LKDSGSYFCRGLVGSKNVSSE 166
Query: 71 CVVI 74
V I
Sbjct: 167 TVQI 170
Score = 36.4 bits (84), Expect = 0.006
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ + + +W+ +S + S I +DSGEY+C +D
Sbjct: 30 QGAYSPEDQSTQWFHNESLISSQASSYF---------IDAATVDDSGEYRCQTQLSTLSD 80
Query: 68 ETNCVV 73
V
Sbjct: 81 PVQLEV 86
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 49.0 bits (116), Expect = 5e-07
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 50/154 (32%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV--SWTKNGQPLNSSNILDLK 239
D ++P + G+ L L+ + + + +W +++
Sbjct: 104 IYDVVLSPSH------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 157
Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQI 299
K S + K +++L I
Sbjct: 158 LKTQSGS------------------------------------------EMKKFLSTLTI 175
Query: 300 QEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
V D+G+Y C A++ L T + + V P
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 46.7 bits (110), Expect = 3e-06
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 10 GSTKPPPTVKWYK-----GNRELSKRDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVA 60
W +++L RD + ++ I D G Y C A
Sbjct: 131 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190
Query: 61 TNKHGTDETNCVVIVE 76
++ T + + V V
Sbjct: 191 SSGLMTKKNSTFVRVH 206
Score = 37.8 bits (87), Expect = 0.002
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 3/74 (4%)
Query: 12 TKPPPTVKWYK--GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
+ V + +S+ D I +G C A + ++
Sbjct: 34 SISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKINDESYQS 92
Query: 70 NCVVIVESEEESKE 83
++V +
Sbjct: 93 IMYIVVVVGYRIYD 106
Score = 36.7 bits (84), Expect = 0.006
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
VS + + I G+ C A + + ++
Sbjct: 35 ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 94
Query: 276 KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 315
+ + I D+ ++ E+ ++ V CTA
Sbjct: 95 YIVVVVGYRIYDVV----LSPSHGIELSVGEKLVLNCTAR 130
Score = 32.8 bits (74), Expect = 0.12
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
I G+ C A + + ++ + V
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY 102
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 46.4 bits (110), Expect = 7e-07
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 186 AMTPPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----ILDLKY 240
+ Q LT T+ +G L+ V + + W+ Q + + D +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 241 K-----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ S+ + +V DEG Y C+ ++ +K LT
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLT 103
Score = 34.1 bits (78), Expect = 0.013
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 1 MQNVIKVKVGST---------KPPPTVKWYK---------GNRELSKRDYSMSYSD-GVV 41
QNV V G T +++W + L + + +
Sbjct: 13 TQNVT-VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL 71
Query: 42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
S+ + D D G+Y C + + V
Sbjct: 72 SISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 46.1 bits (109), Expect = 1e-06
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD----------L 238
+ L D + DG+ S + + +W NG+ L S+ +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ K L + V +D G V + + + LT
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGV---QDSAALT 102
Score = 31.9 bits (72), Expect = 0.079
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 16/74 (21%)
Query: 15 PPTVKWYKGNRELSKRD-----------YSMSYSDGVVSMEIIDCKPEDSG-EYKCVATN 62
W+ EL + Y + + + K +DSG
Sbjct: 35 IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG 94
Query: 63 KHGTDETNCVVIVE 76
+ + + ++
Sbjct: 95 V----QDSAALTIQ 104
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.9 bits (111), Expect = 2e-06
Identities = 18/159 (11%), Positives = 37/159 (23%), Gaps = 36/159 (22%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-------ASLQIQEVFPEDEGV 259
L++ D V W + + + L+I+ + +D G
Sbjct: 16 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75
Query: 260 YVCTATNSLGTAETKCKLT---------PLNSSNILDLK---------------YKNGVA 295
Y T ++ GT L P+ + Y+
Sbjct: 76 YNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEH 135
Query: 296 -----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+ + + C A N + +
Sbjct: 136 LRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 41.1 bits (96), Expect = 1e-04
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 11 STKPPPTVKWYKGNRELS--KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATN 62
T V+W +G+ ++ KR G ++I + +DSG Y +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 63 KHGTDETNCVVIVESEEE 80
+GT N + + E
Sbjct: 83 TNGTRILNKALDLRILEM 100
Score = 39.2 bits (91), Expect = 7e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
NG L+I+ + +D G Y T ++ GT L +R
Sbjct: 58 LANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE 99
Score = 34.9 bits (80), Expect = 0.016
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
+K Y+G L S +M +KC A N+ + VV
Sbjct: 123 TDVELKLYQGKEHLR--------SLRQKTMSYQWT--NLRAPFKCKAVNRVSQESEMEVV 172
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 47.9 bits (113), Expect = 2e-06
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 23/116 (19%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVK---GDPEPRVSWTKNGQPLNSSNILDLKYKN 242
+ P + G+ + + VV+ RV W + ++S + Y N
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 243 --------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
SL +Q+V DEG+Y C + K +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE 117
Score = 44.5 bits (104), Expect = 2e-05
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 29/137 (21%)
Query: 200 TIDDGQCLDLSAVVKGDPEPR---VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
+ G + ++ E R V+W + + L Y + + S + Q +
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETV-LSYDSNMRSGKFQSLGRFR 187
Query: 257 EGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
V L S+++Q V D+G+Y C+
Sbjct: 188 NRVD-------------------------LTGDISRNDGSIKLQTVKESDQGIYTCSIYV 222
Query: 317 SLGTAETKCKLTVRSTP 333
+ L V
Sbjct: 223 GKLESRKTIVLHVVQDE 239
Score = 41.8 bits (97), Expect = 2e-04
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 21/91 (23%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV---------------------VSME 44
V+ K V W + +Y + Y + S+
Sbjct: 28 VVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLL 87
Query: 45 IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
+ D + D G Y C K+ + V +
Sbjct: 88 LQDVQKADEGIYTCEIRLKNESMVMKKPVEL 118
Score = 38.7 bits (89), Expect = 0.002
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 25/99 (25%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV------------------------- 40
++ K V W + ++ + +SY +
Sbjct: 141 SIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRND 200
Query: 41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 79
S+++ K D G Y C V+ V +E
Sbjct: 201 GSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 45.2 bits (106), Expect = 4e-06
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
S T + D ++ +D+T+ G + L VK + + W+ Q
Sbjct: 19 SPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ 78
Query: 230 L----NSSNILDLKYK-----NGVASLQIQEVFPEDEGVYVCTATNS 267
+ D + + S+ I V DEG Y C+
Sbjct: 79 TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM 125
Score = 32.1 bits (72), Expect = 0.12
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 14 PPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
+++W ++ R ++ + +S+ I + D GEY C
Sbjct: 66 EDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM 125
Query: 64 HGTDETNCVVIVE 76
+ V ++
Sbjct: 126 PVRTAKSLVTVLG 138
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 46.7 bits (110), Expect = 7e-06
Identities = 29/230 (12%), Positives = 55/230 (23%), Gaps = 43/230 (18%)
Query: 147 NNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPP--QFANKLTDKTIDDG 204
N T P+ S + ++ R L++P F ++ K+
Sbjct: 32 NTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPP 91
Query: 205 QCLDLSAVVKGDPEPRVSWTKNGQPLNS---SNILDLKYKNGVASLQIQEVFPEDEGVYV 261
L++ V P W +G P + + + + + + + +G
Sbjct: 92 GLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLA 151
Query: 262 CTATNSLGTAETKC--------------------------------------KLTPLNSS 283
LG T+ +
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 284 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
I + +AS + D G Y C G + V P
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261
Score = 43.2 bits (101), Expect = 1e-04
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYK 57
Q + + + ++ ++ S ++ +++ D+G+Y+
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 239
Query: 58 CVATNKHGTDETNCVVIVESE 78
C+ + G +N +V E
Sbjct: 240 CMIRTEGGVGISNYAELVVKE 260
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 43.8 bits (103), Expect = 3e-05
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
+ + + T ++ P + +L+ +G P+ V WT
Sbjct: 100 SYGGADYKRITVKVNAPYNKINQR-------ILVVDPVTSEHELTCQAEGYPKAEVIWTS 152
Query: 226 NGQPLNSSNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+ + S K ++L+I ++ CT +L
Sbjct: 153 SDHQVLSGKTTTTNSKREEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPEENHTAELV 208
Score = 40.0 bits (93), Expect = 5e-04
Identities = 4/66 (6%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSY---SDGVVSMEI-IDCKPEDSGEYKCVATNKHGTDET 69
P V W + ++ + + + + ++ + + + C +
Sbjct: 144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENH 203
Query: 70 NCVVIV 75
+++
Sbjct: 204 TAELVI 209
Score = 36.1 bits (83), Expect = 0.009
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 29/117 (24%)
Query: 218 EPRVSWTKNGQPL-------NSSNILDLKYKN-----------GVASLQIQEVFPEDEGV 259
V W + + + Y+ G A+LQI +V +D GV
Sbjct: 35 ALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGV 94
Query: 260 YVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV-CTAT 315
Y C + + + + + +I V P + C A
Sbjct: 95 YRCMISYGGADYKRI----------TVKVNAPYNKINQRILVVDPVTSEHELTCQAE 141
Score = 33.8 bits (77), Expect = 0.047
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
G A+LQI +V +D GVY C + G + + V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN 114
Score = 30.7 bits (69), Expect = 0.55
Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
+N+I+ G Y+ L K S G +++I D K +D+G Y+C+ +
Sbjct: 45 KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLS----LGNAALQITDVKLQDAGVYRCMIS 100
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIK- 118
+ + V+ + + + P +I T + +
Sbjct: 101 YGGADYKR---ITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV 157
Query: 119 ---SSYSSHTDDTGRTTTQMSTLSSNYSSSTN 147
+ ++++ + STL N +++
Sbjct: 158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 43.1 bits (101), Expect = 6e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESD 346
K+G ASL++ + E+ G Y C + A+ +L V ++PA+ L +
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKE 133
Score = 36.6 bits (84), Expect = 0.008
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
K+G ASL++ + E+ G Y C + A+ +L
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE 115
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 43.9 bits (102), Expect = 7e-05
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKC 275
SW S + +++ L I+ + + G Y C A S
Sbjct: 527 RHATYSWRHKENVEQSC---EPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHW 583
Query: 276 KLTP 279
+L P
Sbjct: 584 QLLP 587
Score = 37.7 bits (86), Expect = 0.006
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 2/50 (4%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
T W + + + I + + G Y C A
Sbjct: 527 RHATYSWRHKENVE--QSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEG 574
Score = 31.5 bits (70), Expect = 0.39
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTVRS 331
+++ L I+ + + G Y C A S +L
Sbjct: 546 GHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 7e-05
Identities = 63/393 (16%), Positives = 112/393 (28%), Gaps = 109/393 (27%)
Query: 10 GSTKPPPTVKWYKG--NRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKC---VAT- 61
S+ + + R L + Y V + + + + C + T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-----AFNLSCKILLTTR 273
Query: 62 NKHGTD----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEI 117
K TD T + ++ + E+ L KY++ + P +E+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLP------REV 322
Query: 118 KSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTK 177
++ + N+ K+T + S L+ P+ R
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTTIIESSLNVLEPAEYRKMFD 376
Query: 178 EL-IMPPDTAMTPPQFANKL-TDKTIDD-----GQCLDLSAVVKGDPEPRVSWTKNGQPL 230
L + PP + P + + D D + S V K E +S +
Sbjct: 377 RLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------I 428
Query: 231 NSSNILDLKYKNG---------VASLQIQEVFPEDEGV------YVCTATNSLG----TA 271
S L+LK K V I + F D+ + Y + +G
Sbjct: 429 PSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHLKNI 484
Query: 272 ET-----------------KCKL----TPLN-SSNILDL-----KYKNGVASLQIQEVFP 304
E + K+ T N S +IL+ YK I + P
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDP 539
Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
+ E V + L E + S +L
Sbjct: 540 KYER-LVNAILDFLPKIEENL---ICS-KYTDL 567
Score = 36.8 bits (84), Expect = 0.010
Identities = 41/312 (13%), Positives = 69/312 (22%), Gaps = 101/312 (32%)
Query: 80 ESKEQQ--------ELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDT--- 128
E+ E Q F+ + D K ++ + I +++EI S +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEEIDHIIMSKDAVSGTL 65
Query: 129 ---------GRTTTQM---STLSSNY----SSSTNNATSPSKKITRRMNSILDTDSPSRS 172
Q L NY S PS +TR R
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIE-------QRD 117
Query: 173 RSTTKELIMPPDTAMTPPQFANKLTDK----------TIDDG------QCLDLSAV---- 212
R + + KL I DG + L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYK 175
Query: 213 VKGDPEPRVSWTKNGQ---------PLNS-SNILDLKY-----------------KNGVA 245
V+ + ++ W L +D + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 246 SLQIQEVFPE-----DEGVYVCTATNSLGTAETKCK--LTPLNSS--NILDLKYKNGVAS 296
L + + V A + CK LT + L ++
Sbjct: 236 RLLKSKPYENCLLVLLN---VQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 297 LQIQEVFPEDEG 308
DE
Sbjct: 292 DHHSMTLTPDEV 303
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 42.9 bits (100), Expect = 8e-05
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
V+ + V W S ++ L ++ V D G Y C
Sbjct: 30 GVEPEDNATVHWVLRKPAAGSH---PSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83
Score = 32.9 bits (74), Expect = 0.12
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
+ TV W + + + + DSG Y C +
Sbjct: 34 EDNATVHWVLRKPAAGSHPSRWAGMGR--RLLLRSVQLHDSGNYSCYRAGR 82
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 41.8 bits (98), Expect = 8e-05
Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 35/151 (23%)
Query: 214 KGDPEPRVSWTKNGQPL----NSSNILDLKYKNGV------ASLQIQEVFPEDEGVYVCT 263
P V W K + NS +KN V SL I + DE Y
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 264 ATNSLGTAE------------------TKCKLT--PLNSSNILDLKYKNG-----VASLQ 298
+ N T + + LT L +++ Y+ +
Sbjct: 79 SPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKT 138
Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+ + + C A N + +
Sbjct: 139 MSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 35.7 bits (82), Expect = 0.010
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 9 VGSTKPPPTVKWYKGNREL-----SKRDYSMSYSDGVV------SMEIIDCKPEDSGEYK 57
V S P V W K ++ S+ S+ + V S+ I + D EY+
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76
Query: 58 CVATNKHGTDETNCVVIV 75
+ N T + V+
Sbjct: 77 MESPNITDTMKFFLYVLE 94
Score = 30.3 bits (68), Expect = 0.65
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
+K Y+G L S R +MSY +KC A N+ + V
Sbjct: 118 TDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKCKAVNRVSQESEMEV 166
Query: 73 V 73
V
Sbjct: 167 V 167
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 41.1 bits (96), Expect = 9e-05
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 7 VKVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNK 63
++ V + +E+ + Y M + G++ M + + ED G Y +
Sbjct: 59 MQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDG 118
Query: 64 HGTDETNCVVIVESEEESKEQQEL 87
T + V+I + ++ +++ E
Sbjct: 119 KATGHSTLVLIGDVYKKLQKEAEF 142
Score = 29.2 bits (65), Expect = 1.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
+VS+ N + + + G+ + ++++ EDEG Y + G A
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATGH 123
Query: 275 CKL 277
L
Sbjct: 124 STL 126
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 40.3 bits (94), Expect = 1e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 295 ASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTVRSTPAA 335
L +Q + D G Y C T GT + L V + A
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
Score = 37.2 bits (86), Expect = 0.001
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 204 GQCLDLSAVVKGDPEP--RVSWTKNGQPL-----NSSNILDLKYKNGV-----ASLQIQE 251
G + L + +V+W + Q L + + +K+ V L +Q
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77
Query: 252 VFPEDEGVYVCT-ATNSLGTAETKCKLT 278
+ D G Y C T GT + L
Sbjct: 78 LTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
Score = 30.3 bits (68), Expect = 0.33
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYSM------SYSDGV-----VSMEIIDCKPEDSGEYKC 58
+T V W + ++ L+ + + S+ D V + + + D+GEY C
Sbjct: 29 STTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFC 88
Query: 59 -VATNKHGTDETNCVVIV 75
T GT + V
Sbjct: 89 IYHTYPDGTYTGRIFLEV 106
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 41.8 bits (97), Expect = 1e-04
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
D V W L + ++ G + L ++ G VC + T +
Sbjct: 35 DRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89
Query: 276 KLT 278
+L
Sbjct: 90 QLL 92
Score = 36.4 bits (83), Expect = 0.007
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 282 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
+++ ++ G + L ++ G VC + T + +L V + P
Sbjct: 46 DTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP 97
Score = 33.0 bits (74), Expect = 0.092
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
++ +V+W + L G + + + +G CV + T
Sbjct: 30 RLACADRGASVQWRGLDTSLGAVQSD----TGRSVLTVRNASLSAAGTRVCVGSCGGRTF 85
Query: 68 ETNCVVIV 75
+ ++V
Sbjct: 86 QHTVQLLV 93
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 40.7 bits (95), Expect = 2e-04
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
V D W G L+S L + + + E Y C A N++
Sbjct: 133 VEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI----------SSEQDYTCIAENAVSNL 182
Query: 272 ETKCKLTPL 280
L
Sbjct: 183 SFSVSAQKL 191
Score = 31.9 bits (72), Expect = 0.20
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 215 GDPEPRVSWTKNGQPL----------NSSNILDLKYKNGV-----ASLQIQEVFPEDEGV 259
G+ ++W N L ++ + K + SLQ+ + ED G
Sbjct: 25 GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84
Query: 260 YVCTATNSLGTAETKCKLT 278
Y + + L
Sbjct: 85 YRAQISTKTSAKLSSYTLR 103
Score = 31.1 bits (70), Expect = 0.33
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
SLQ+ + ED G Y + + L +
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL 108
Score = 31.1 bits (70), Expect = 0.35
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 7 VKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV----------------SMEIIDCKP 50
++ + + + W L+ + S + S+++ + K
Sbjct: 20 LEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKM 79
Query: 51 EDSGEYKCVATNKHGTDETN 70
ED+G Y+ + K ++
Sbjct: 80 EDTGSYRAQISTKTSAKLSS 99
Score = 31.1 bits (70), Expect = 0.40
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
V + +W LS S + VS + + +Y C+A N
Sbjct: 133 VEDADDNVSFRWEALGNTLS------SQPNLTVSWDP---RISSEQDYTCIAEN 177
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.5 bits (92), Expect = 2e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
K+G AS+ + + D G Y C + G A K L V
Sbjct: 85 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 37.5 bits (87), Expect = 0.001
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
RV +T N K+G AS+ + + D G Y C + G A K L
Sbjct: 76 RVHFTSND------------LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 122
Score = 34.8 bits (80), Expect = 0.009
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
VI + G KG + D G S+ + + + D G Y+C
Sbjct: 54 DQVIILYSGDKIYDDYYPDLKGRVHFTSNDLK----SGDASINVTNLQLSDIGTYQCKVK 109
Query: 62 NKHGTDETNCVVIV 75
G ++V
Sbjct: 110 KAPGVANKKIHLVV 123
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 40.4 bits (94), Expect = 3e-04
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 217 PEPRVSWTKNGQPL----NSSNILDLKYKN-------GVASLQIQEVFPEDEGVYVCTAT 265
+ R+ W K + + + + +YKN S+ I + P DEG Y C
Sbjct: 26 AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL 85
Query: 266 NSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
A + L + L +K S+ E+ + +C+ +
Sbjct: 86 KYEKDAFKREHLAEVT----LSVKADFPTPSISDFEIPTSNIRRIICSTSGG 133
Score = 33.4 bits (76), Expect = 0.058
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 217 PEPRVSWTKNGQPLNSSNI-----LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
PEP +SW +NG+ LN+ N + + + L ++C
Sbjct: 135 PEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV 191
Query: 272 ET 273
Sbjct: 192 NQ 193
Score = 31.9 bits (72), Expect = 0.18
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 12 TKPPPTVKWYKGNRELSKRDYS---MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
K V +Y + +S+ I+ +P D G Y+CV
Sbjct: 33 QKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDA 91
Score = 31.5 bits (71), Expect = 0.28
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 13 KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSME-IIDCKPEDSGEYKCVATNKHGTDET 69
P P + W + EL+ + S + ++ +D + + C+ H
Sbjct: 134 FPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQ 193
Score = 31.5 bits (71), Expect = 0.30
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGT 320
S+ I + P DEG Y C
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKD 90
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 38.7 bits (90), Expect = 4e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 295 ASLQIQEVFPEDEGVYVC-TATNSLGTAETKCKLTVRSTP 333
ASL++ + EDEG Y C T G+ L V + P
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 36.0 bits (83), Expect = 0.003
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC-TATNSLGTAETKCKLT 278
R+ + N ASL++ + EDEG Y C T G+ L
Sbjct: 64 RLEFVAARLGAELRN----------ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 4e-04
Identities = 42/305 (13%), Positives = 83/305 (27%), Gaps = 100/305 (32%)
Query: 66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTR------QEIKS 119
T+ +++E EL FL Y+ + P+ + E ++
Sbjct: 45 TEG------FAADDEPTTPAELVGKFL-----GYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 120 SYSSHTD----------DTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSP 169
Y D + T + L NY ++ A P ++ NS L
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP---FDKKSNSALFRAVG 150
Query: 170 S----------------------RSRSTT-----KELIMPPDTAMTPPQFANKLTDKTID 202
R T +LI ++ +K
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 203 DGQCLDLSAVVKGDPEPR----------VSWTKNGQPLNSSNILDL-KYKNGVASLQIQE 251
G L++ ++ +P +S PL ++ L Y V + ++
Sbjct: 211 QG--LNILEWLE-NPSNTPDKDYLLSIPISC-----PLIG--VIQLAHY---VVTAKLLG 257
Query: 252 VFPED------------EGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQI 299
P + +G+ A + E+ + + + + GV
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV----SVRKAITVLFFIGVRC--- 310
Query: 300 QEVFP 304
E +P
Sbjct: 311 YEAYP 315
Score = 40.4 bits (94), Expect = 0.001
Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 83/240 (34%)
Query: 149 ATSPS-KKITRRMN---------SILD--TDSP---------SRSRSTTKELIMPPDTAM 187
TS + + + R + SILD ++P + + +E AM
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-RENYS----AM 1691
Query: 188 TPPQFAN----KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
F KL + I ++ + +S T+ QP +
Sbjct: 1692 I---FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA----LT------- 1737
Query: 244 VASLQIQEVFPEDEGVYVCTATN---SLG--TAETKCKLTPLNS-SNILDLK------YK 291
+ E + +G+ AT SLG A L S ++++ ++ +
Sbjct: 1738 LMEKAAFEDL-KSKGLIPADATFAGHSLGEYAA--------LASLADVMSIESLVEVVFY 1788
Query: 292 NGVASLQIQEVFPEDE---GVYVCTATN----SLGTAETKCKLTV----RSTP----AAN 336
G+ +Q P DE Y A N + ++ + V + T N
Sbjct: 1789 RGMT---MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.1 bits (91), Expect = 4e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
G +L+IQ V DEG Y C + E +L V
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLK---------YKNGVASLQIQEVFPEDEGVYVCTA 264
+ V +NG+ ++ + + G +L+IQ V DEG Y C
Sbjct: 45 RSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFF 104
Query: 265 TNSLGTAETKCKLT 278
+ E +L
Sbjct: 105 RDHSYQEEAAVELK 118
Score = 33.8 bits (77), Expect = 0.028
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 12 TKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPEDSGEYKCVAT 61
+ V Y+ ++ S +G V++ I + + D G Y C
Sbjct: 46 SPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 105
Query: 62 NKHGTDETNCVVIVE 76
+ +E + VE
Sbjct: 106 DHSYQEEAAVELKVE 120
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.5 bits (91), Expect = 6e-04
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWT 224
+ + K+ D A NK + DG D S ++ G + + W
Sbjct: 80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWL 139
Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
K+G ++ + + + G Y C
Sbjct: 140 KDGSIISP-------LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 38.3 bits (88), Expect = 0.001
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
D + + W KNGQ L + L ++ ED G YVC S
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV--------EDSGYYVCYTPAS 67
Score = 31.8 bits (71), Expect = 0.20
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
+KW K +EL D + ++ + EDSG Y C +
Sbjct: 24 DSDENLKWEKNGQELP------QKHDKHLVLQDFS-EVEDSGYYVCYTPASNKNTYLYLK 76
Query: 73 VIVESEEESK 82
V S +++K
Sbjct: 77 ARVGSADDAK 86
Score = 31.4 bits (70), Expect = 0.25
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
T+KW K +S + + + + + G Y+C +
Sbjct: 132 TDKTIKWLKDGSIIS------PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 39.7 bits (92), Expect = 6e-04
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDG---VVSMEIIDCKPEDSG-EYKCVATNKHGTDE 68
+PP + W+ + + + G V S+ I+ + G + C ++
Sbjct: 144 RPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKP 203
Query: 69 TNCVVIVE 76
V +
Sbjct: 204 QLLTVSLT 211
Score = 37.4 bits (86), Expect = 0.004
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 282 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTVRSTP 333
L + ASL++ + EDEG Y C T G+ L V + P
Sbjct: 65 EFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKP 117
Score = 33.9 bits (77), Expect = 0.045
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 19/77 (24%)
Query: 221 VSWTKNGQPLN------------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVC 262
++W ++G+ + L + ASL++ + EDEG Y C
Sbjct: 36 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTC 95
Query: 263 T-ATNSLGTAETKCKLT 278
T G+ L
Sbjct: 96 LFVTFPQGSRSVDIWLR 112
Score = 32.0 bits (72), Expect = 0.20
Identities = 21/164 (12%), Positives = 37/164 (22%), Gaps = 34/164 (20%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSM-----SYSDGVVSMEIIDCKPEDSGEYKC-VAT 61
+ G + +G + S+ + + ED G Y C T
Sbjct: 40 RHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVT 99
Query: 62 NKHGTDETNCVVIV--------------ESEEESKEQQELAHNFLYSGDRKYIEKHIRPA 107
G+ + + V + E + ++ RP
Sbjct: 100 FPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG-------------RPP 146
Query: 108 PAII-TTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT 150
I + S T T S SS +
Sbjct: 147 AQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQ 190
Score = 32.0 bits (72), Expect = 0.23
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEG-VYVCTATNSLGT 270
G P +++W + + ++ + + +G V SL I + +G C +
Sbjct: 143 GRPPAQITWHSDLGGMPQTSQV-PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFE 201
Query: 271 AETKCKLTPLNSSNILDLKY 290
P + L + Y
Sbjct: 202 -------KPQLLTVSLTVYY 214
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 39.1 bits (91), Expect = 7e-04
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 32/136 (23%)
Query: 214 KGDPEPRVSWTKNGQPLNS----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269
+ + + NG+ + +DL NG +L+I V ED G Y +
Sbjct: 36 HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHETE 93
Query: 270 TAET-------------------KCKLT--PLNSSNILDLKYKNG-----VASLQIQEVF 303
LT L +++ Y+ + + +
Sbjct: 94 DQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW 153
Query: 304 PEDEGVYVCTATNSLG 319
+ C A N +
Sbjct: 154 TNLRAPFKCKAVNRVS 169
Score = 38.3 bits (89), Expect = 0.001
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 11/61 (18%)
Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
L+ V + + + + L S + Y+ + C A N +
Sbjct: 120 LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKCKAVNRV 168
Query: 269 G 269
Sbjct: 169 S 169
Score = 32.6 bits (74), Expect = 0.12
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
+K Y+G L S +S + + +KC A N+ + VV
Sbjct: 128 TDVELKLYQGKEHLR------SLRQKTMSYQWTN----LRAPFKCKAVNRVSQESEMEVV 177
Score = 30.2 bits (68), Expect = 0.59
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 7 VKVGSTKPPPTVKWYKGNREL--------SKRDYSMSYSDGV------VSMEIIDCKPED 52
+ + W + K + + D V ++ I + ED
Sbjct: 21 ILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKED 80
Query: 53 SGEYKCVATNKHGTDET 69
G+Y ++
Sbjct: 81 RGDYYMRMLHETEDQWK 97
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 38.0 bits (88), Expect = 8e-04
Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 20/111 (18%)
Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
V+W + P N N+ K G P E + +A S G
Sbjct: 37 LVTWQRPDAPANHQNVAAFHPKMGP---SFPSPKPGSERLSFVSAKQSTGQDTEAELQD- 92
Query: 280 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 329
A+L + + EDEG Y C AT G+ L V
Sbjct: 93 ---------------ATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 26.9 bits (59), Expect = 6.0
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 23 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIV 75
++ + +D D ++ + ED G Y C AT G+ + V
Sbjct: 77 SAKQSTGQDTEAELQDA--TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 39.6 bits (91), Expect = 0.001
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
G + + V P EG Y+ T + +L V P +L + +
Sbjct: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARA 304
Score = 32.7 bits (73), Expect = 0.20
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
G + + V P EG Y+ T + +L
Sbjct: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELA 287
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 37.1 bits (85), Expect = 0.002
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 195 KLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTK----NGQPLNSSNILDLKYKN-GVASLQ 248
+ ++ +I G +L VK P V+W K L + KN L
Sbjct: 17 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILH 76
Query: 249 IQEVFPEDEGVYVCTATNSLGTAET 273
+ V P D G Y C+A E+
Sbjct: 77 FEPVLPNDNGSYRCSANFQSNLIES 101
Score = 32.1 bits (72), Expect = 0.082
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 4 VIKVKVGSTKPPPTVKWYK--GNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYK 57
++ V P V W K G + D S+ + + P D+G Y+
Sbjct: 30 ELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYR 89
Query: 58 CVATNKHGTDETNCVVIVESEEESKEQQELAHN 90
C A + E++ + + + K H+
Sbjct: 90 CSANFQSNLIESHSTTLYVT--DVKHHHHHHHH 120
Score = 29.0 bits (64), Expect = 0.92
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 323
+ L + V P D G Y C+A E+
Sbjct: 67 EKNISFFILHFEPVLPNDNGSYRCSANFQSNLIES 101
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 38.7 bits (89), Expect = 0.002
Identities = 33/276 (11%), Positives = 76/276 (27%), Gaps = 34/276 (12%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
P + L K++ + + E+ + ++ + C + G +
Sbjct: 27 QPKLLGI---ETPLPKKELLLP-GNNRKVYELSN--VQEDSQPMCYSNCPDGQSTAKTFL 80
Query: 74 IVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPAIITT---RQEIKSSYSSHTDD 127
V E + ++ G + + P + ++ + +
Sbjct: 81 TVYWTPER-VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP 139
Query: 128 TGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAM 187
TTT + + + R L +T+ + T +
Sbjct: 140 AEVTTTVLVRRDHH-----------GANFSCRTELDLRPQGLELFENTSAPYQL--QTFV 186
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNGQPLNSSNILDLKYKNGV 244
P ++ + ++ + + G E +V Q LN + +
Sbjct: 187 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG---NDSF 243
Query: 245 ASLQIQEVFPEDEGVY--VCTATNSLGTAETKCKLT 278
++ V EDEG C + ET +T
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279
Score = 31.0 bits (69), Expect = 0.51
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 261 VCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASL-QIQEVFPEDEGVY--VCTATNS 317
VC+ +E + L + + Y N S V EDEG C
Sbjct: 209 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Query: 318 LGTAETKCKLTVRSTPAANL 337
+ ET +T+ S PA N+
Sbjct: 269 NQSQETLQTVTIYSFPAPNV 288
Score = 30.2 bits (67), Expect = 1.0
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYK--CVATNKHG 65
+ P + + + +D + + ED G + C +
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270
Query: 66 TDETNCVVIVES 77
+ ET V + S
Sbjct: 271 SQETLQTVTIYS 282
Score = 29.4 bits (65), Expect = 1.9
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 292 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
N ++ V +++ +C + G + K LTV TP
Sbjct: 47 NNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTP 86
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.0 bits (89), Expect = 0.002
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
V W N L Y + ++ I + DSG Y+C++ ++T
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQCLSEE-RVKNKTVF 615
Query: 72 VVIVESEEE 80
V+ + E
Sbjct: 616 QVVAKHVLE 624
Score = 38.2 bits (87), Expect = 0.004
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
RV W L + + G +L I + D GVY C +
Sbjct: 560 NLARVFWKFQNGVLKAES--PKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
Score = 31.3 bits (69), Expect = 0.52
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
L I + D GVY C + +T ++ + + P
Sbjct: 588 LLIFNLSEGDSGVYQCLSEER-VKNKTVFQVVAKHVLEVKVVPKPVVAP 635
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.4 bits (86), Expect = 0.004
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 25/115 (21%)
Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKN-----------GVASLQIQEVFPEDEGVYVC 262
V+ +G+ + Y+ G A+L+I V D G Y+C
Sbjct: 43 SSSLRQVVNVYADGKEVEDR--QSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLC 100
Query: 263 TATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV-CTATN 316
+ + +++LK + L + +D G+++ C +T
Sbjct: 101 YFQDGDFYEKA-----------LVELKVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Score = 35.8 bits (82), Expect = 0.011
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
G A+L+I V D G Y+C + + +L V +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALG 121
Score = 35.1 bits (80), Expect = 0.023
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKN-GQPLNSSNILDLKYKNGVA 245
++ D + L G P+P++ W+ N G+ + + + G+
Sbjct: 117 VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLY 176
Query: 246 SLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLT 278
++ + CT +SL E ++
Sbjct: 177 AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210
Score = 32.0 bits (72), Expect = 0.19
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 16/150 (10%)
Query: 12 TKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPEDSGEYKCVAT 61
+ V Y +E+ R + + G ++ I + DSG+Y C
Sbjct: 44 SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQ 103
Query: 62 NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDR-KYIEKHIRPAPAIITTR---QEI 117
+ ++ V ++ + + G + P P I + + I
Sbjct: 104 DGDFYEKAL--VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
Query: 118 KSSYSSHTDDTGRTTTQMSTLSSNYSSSTN 147
+ + D +++ SS
Sbjct: 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.7 bits (82), Expect = 0.004
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 216 DPEPRVSWTKNGQPL------NSSNILDLKYKNGV------ASLQIQEVFPEDEGVYVCT 263
+ +++W S + K+K V +L I +V ED Y+
Sbjct: 32 ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91
Query: 264 ATNSLGTAETK 274
G +
Sbjct: 92 VLKKTGNEQEW 102
Score = 34.9 bits (80), Expect = 0.008
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 283 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 329
+ L ++G +L I +V ED Y+ G + KL V
Sbjct: 63 KGRVRLDPQSG--ALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 32.6 bits (74), Expect = 0.066
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 12 TKPPPTVKWYKGNREL-------SKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKC 58
+ + W+ + + + + V ++ I + ED+ Y
Sbjct: 31 PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIM 90
Query: 59 VATNKHGTDET 69
K G ++
Sbjct: 91 RVLKKTGNEQE 101
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.8 bits (79), Expect = 0.007
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC-KPEDSGEYKCVATNKHGTDET 69
P + W ++ + + + + + + + E SG Y C D
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 34.8 bits (79), Expect = 0.007
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
P + W N + + + + E G YVC S
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 36.3 bits (83), Expect = 0.008
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 242 NGVASLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQ 300
+ L + E DE YVC + GTAE +L ++ G S
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS---- 129
Query: 301 EVFPEDEGVYVCTATNS 317
+ + + C + N
Sbjct: 130 VMEDSAQEIATCNSRNG 146
Score = 33.6 bits (76), Expect = 0.057
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWT 224
+ + + + P+ P T ++D + + G+P P+++W
Sbjct: 99 GAAGTAEATARLNVFAKPEATEVSPNKG---TLSVMEDSAQEIATCNSRNGNPAPKITWY 155
Query: 225 KNGQPLNSSNILD---------LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA 271
+NGQ L ++ ++ +G ++L ++ + + + C A SL
Sbjct: 156 RNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEG 215
Query: 272 ETK 274
Sbjct: 216 RHG 218
Score = 29.0 bits (64), Expect = 1.8
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 13 KPPPTVKWYKGNRELSKRD----------YSMSYSDGVVSM----EIIDCKPEDSGEYKC 58
P P + WY+ + L ++ + G++S+ + K + + C
Sbjct: 147 NPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHC 206
Query: 59 VATN 62
A
Sbjct: 207 AAHY 210
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 36.9 bits (85), Expect = 0.009
Identities = 7/64 (10%), Positives = 11/64 (17%), Gaps = 3/64 (4%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
+ W N + N AS C +
Sbjct: 36 HVNANYIVWKTNHFTIPKEQY---TIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNV 92
Query: 275 CKLT 278
+T
Sbjct: 93 YGIT 96
Score = 36.1 bits (83), Expect = 0.017
Identities = 6/70 (8%), Positives = 17/70 (24%), Gaps = 2/70 (2%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
K + W + + K Y++ S + + C
Sbjct: 30 KCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASLNIQLTCNILTFGQ 87
Query: 66 TDETNCVVIV 75
++ + +
Sbjct: 88 LEQNVYGITI 97
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 34.5 bits (78), Expect = 0.012
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 181 MPPDTAMTPPQFANKLTDK-----TIDDGQCLDLSAVVK-GDPEPRVSWTK----NGQPL 230
M T + +L K + G+ + VK P V+W K PL
Sbjct: 1 MEKATKRNDEECEVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPL 60
Query: 231 NSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
L ++ V L + + D G Y C+ + +
Sbjct: 61 EVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
Score = 31.4 bits (70), Expect = 0.18
Identities = 15/87 (17%), Positives = 22/87 (25%), Gaps = 9/87 (10%)
Query: 4 VIKVKVGSTKPPPTVKWYK---------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 54
I+ V P V W K + + S V + D+G
Sbjct: 33 KIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNG 92
Query: 55 EYKCVATNKHGTDETNCVVIVESEEES 81
Y C ++ V I E
Sbjct: 93 SYSCSTNFNSQVINSHSVTIHVRERSQ 119
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 293 GVASLQIQEVFPEDEGVYVCTATNSLGTAET 323
V L + + D G Y C+ + +
Sbjct: 77 PVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 34.5 bits (79), Expect = 0.013
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 214 KGDPEPRV---SWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 262
+ + P + T + + + A L I++V D +YVC
Sbjct: 47 RDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVC 98
Score = 34.2 bits (78), Expect = 0.015
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 269 GTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS-------LGTA 321
GT E + +L PL SS L + A L I++V D +YVC GT
Sbjct: 59 GTPEFRGRLAPLASSRFL----HDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGT- 113
Query: 322 ETKCKLTVR 330
+L V
Sbjct: 114 ----RLVVE 118
Score = 27.6 bits (61), Expect = 2.8
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 15/60 (25%)
Query: 14 PPPTVKWYKGNR---------------ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 58
+V W++ L+ S D + I D + D+ Y C
Sbjct: 39 AIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVC 98
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.0 bits (75), Expect = 0.044
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSK 343
S+ I + D G + C N ++T+ K P++
Sbjct: 81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE-----KVPTR 124
Score = 30.3 bits (68), Expect = 0.33
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
R+ W + + S+ I + D G + C N ++T
Sbjct: 69 RIQWVGDPSWKD-------------GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP:
d.38.1.1 PDB: 3sps_A
Length = 169
Score = 33.4 bits (77), Expect = 0.053
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDT 185
S KI + ++ + RSR+ L++PPDT
Sbjct: 3 SDKIHHHHHHMIQSYPVERSRTIQTRLVLPPDT 35
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.9 bits (77), Expect = 0.068
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 294 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
VA I + P D GV+VC+ G E ++V+ P
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLP 423
Score = 28.1 bits (62), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
VA I + P D GV+VC+ G E ++
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNIS 418
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.0 bits (73), Expect = 0.090
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 10 GSTKPPPTVKWY-----KGNRELSKRD--YSMSY--SDGVVSMEIIDCKPEDSGEYKCVA 60
++ + WY +GN E + Y + S+ I D ED G Y+C
Sbjct: 26 DASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL 85
Query: 61 TNKHGTDETNC 71
G +
Sbjct: 86 GVAGGYCDYAL 96
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276
SL+I ++ ED G Y C + G +
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGGYCDYALC 97
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326
SL+I ++ ED G Y C + G +
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGGYCDYALC 97
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.4 bits (71), Expect = 0.12
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 218 EPRVSWTKNGQPL--------NSSNILDLKYKN------GVASLQIQEVFPEDEGVYVC 262
E V W + + + KY +L++ + +D+G+Y C
Sbjct: 28 ELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
Score = 29.8 bits (67), Expect = 0.41
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 295 ASLQIQEVFPEDEGVYVC-----TATNSLGTAETKCKLTVRS 331
+L++ + +D+G+Y C T + + +L+V +
Sbjct: 69 WTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 33.3 bits (76), Expect = 0.14
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ- 228
+ E + P + PP+ + L + C+ + V DP+ + +W +G
Sbjct: 305 NTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCV-VVDVSHEDPQVKFNWYVDGVQ 363
Query: 229 PLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNS 267
N+ + N V+ L + D Y C +N
Sbjct: 364 VHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK 406
Score = 29.8 bits (67), Expect = 1.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAE---TKCKLTVRSTPAA 335
ASL I + EDE Y C + NS + T K+TV P A
Sbjct: 70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKA 113
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 32.4 bits (73), Expect = 0.16
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 8 KVGSTKPPP--TVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
+V P T+ +G +EL +R V++ ++ + + + C A
Sbjct: 112 RVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Score = 30.0 bits (67), Expect = 0.90
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTP 333
E E VC + T + + + P
Sbjct: 61 EPETQPVCFFRCARRTLQARGLIRTFQRP 89
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 31.3 bits (70), Expect = 0.19
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 282 SSNILDLKYKNGVASLQIQEVFPEDE-GVYVCTATNSLGTAETKCKLTVRST 332
S+ I + G ASL++ + G Y C T ET +L R
Sbjct: 65 SAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYRVV 116
Score = 29.0 bits (64), Expect = 1.2
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 232 SSNILDLKYKNGVASLQIQEVFPEDE-GVYVCTATNSLGTAETKCKL 277
S+ I + G ASL++ + G Y C T ET +L
Sbjct: 65 SAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIEL 111
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 30.7 bits (69), Expect = 0.21
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334
G SL I+ D G Y C L V+
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELV 113
Score = 28.8 bits (64), Expect = 1.00
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 241 KNGVASLQIQEVFPEDEGVYVC 262
G SL I+ D G Y C
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCC 91
Score = 28.0 bits (62), Expect = 2.1
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 58
+ + ++ W G +R+ Y + + S+G VS+ I + D G Y C
Sbjct: 35 LGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCC 91
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 31.9 bits (73), Expect = 0.21
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I V ED G+Y C +NS GT KL ++ AA
Sbjct: 207 FTLSINSVETEDFGIYFCQQSNSWPHTFGTGT-----KLELKRADAA 248
Score = 27.3 bits (61), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLG 269
+L I V ED G+Y C +NS
Sbjct: 207 FTLSINSVETEDFGIYFCQQSNSWP 231
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.7 bits (69), Expect = 0.23
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 288 LKYKNGVASLQIQEVFPEDEGVYVC-----TATNSLGTAETKCKLTVR 330
G SLQI + +D Y C T + + +L VR
Sbjct: 71 SHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
Score = 30.7 bits (69), Expect = 0.24
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
G SLQI + +D Y C T
Sbjct: 71 SHKVPGDVSLQINTLQMDDRNHYTCEVTWQT 101
Score = 28.8 bits (64), Expect = 1.1
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRDYS-----MSYSDGVVSMEIIDCKPEDSGEYKC 58
+ + + Y G VS++I + +D Y C
Sbjct: 40 VRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 31.0 bits (69), Expect = 0.30
Identities = 15/87 (17%), Positives = 22/87 (25%), Gaps = 29/87 (33%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYK-----------------------------NGVA 245
P +SW K P S+ + Y
Sbjct: 33 DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP 92
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAE 272
+L++ V P+D G Y C E
Sbjct: 93 TLRLTHVHPQDGGRYWCQVAQWSIRTE 119
Score = 30.2 bits (67), Expect = 0.49
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 30/84 (35%)
Query: 15 PPTVKWYKGNRELSKR--------------------DYSMSYSD----------GVVSME 44
PP + W KG Y S+ D ++
Sbjct: 36 PPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLR 95
Query: 45 IIDCKPEDSGEYKCVATNKHGTDE 68
+ P+D G Y C E
Sbjct: 96 LTHVHPQDGGRYWCQVAQWSIRTE 119
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.5 bits (69), Expect = 0.32
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVC 262
P+ ++ K+G P+ + D+ N + Q + P Y C
Sbjct: 53 PKISITLMKDGVPMEGAQYSDM-SFNDDWTFQRLVHADFTPSSGSTYAC 100
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 30.3 bits (68), Expect = 0.33
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 3 NVIKVKVGSTKPPPTV----KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 58
+V V G ++ P V + Y +Y++ I D + ED+G+YK
Sbjct: 39 SVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNL---------VISDLRMEDAGDYKA 89
Query: 59 VATNKHGTDETN 70
+ T
Sbjct: 90 DINTQADPYTTT 101
Score = 26.4 bits (58), Expect = 7.2
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 288 LKYKNGVASLQIQEVFPEDEGVYVC--TATNSLGTAETKCKLTV 329
+ +L I ++ ED G Y T + L +
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 26.0 bits (57), Expect = 9.8
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
+ +L I ++ ED G Y
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQ 94
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 30.0 bits (68), Expect = 0.40
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 15/66 (22%)
Query: 44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE----ESKEQQELAHNFLYSGDRKY 99
I+ E +Y DE V VE + + Q L
Sbjct: 21 TILLQFKELGSDYLITLETAESNDE--MTVEVELSQLFTDDYGRLQALTRE--------- 69
Query: 100 IEKHIR 105
I + ++
Sbjct: 70 ITRQLK 75
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 29.9 bits (67), Expect = 0.41
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 58
K ++ + ++ Y + + G VS+ I + +D G Y C
Sbjct: 33 KGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCC 89
Score = 28.7 bits (64), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 243 GVASLQIQEVFPEDEGVYVC 262
G SL I+ V +D G Y C
Sbjct: 70 GDVSLIIKNVTLDDHGTYCC 89
Score = 28.7 bits (64), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 293 GVASLQIQEVFPEDEGVYVC 312
G SL I+ V +D G Y C
Sbjct: 70 GDVSLIIKNVTLDDHGTYCC 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.8 bits (67), Expect = 0.44
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 241 KNGVASLQIQEVFPEDEGVYVC 262
+ V +L ++++ PED G Y
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNF 96
Score = 29.8 bits (67), Expect = 0.44
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 291 KNGVASLQIQEVFPEDEGVYVC 312
+ V +L ++++ PED G Y
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNF 96
Score = 27.9 bits (62), Expect = 2.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 9 VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 58
+ S P K ++G EL + V ++ + D KPEDSG Y
Sbjct: 52 IHSGDPKLVDKRFRGRAELMG-----NMDHKVCNLLLKDLKPEDSGTYNF 96
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder,
SCFV, picomolar binder, immune system; 2.35A {Mus
musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Length = 135
Score = 30.2 bits (69), Expect = 0.46
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 15/57 (26%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKES 345
A+L I EDE +Y C S GT KLTV + S
Sbjct: 78 AALTITGAQTEDEAIYFCALWYSNHWVFGGGT-----KLTVLGGGGGS----GGGGS 125
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 31.0 bits (69), Expect = 0.47
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNC 71
PP T W + + S S + +PED G C + T
Sbjct: 154 GPPLTFSWTGNALSPLDPETTRS------SELTLTPRPEDHGTNLTCQMKRQGAQVTTER 207
Query: 72 VVIV 75
V +
Sbjct: 208 TVQL 211
Score = 30.6 bits (68), Expect = 0.59
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 8/71 (11%)
Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNS 267
L + P SWT N +S PED G C
Sbjct: 147 LPGSCEAGPPLTFSWTGNALSPLDPETT-------RSSELTLTPRPEDHGTNLTCQMKRQ 199
Query: 268 LGTAETKCKLT 278
T+ +
Sbjct: 200 GAQVTTERTVQ 210
Score = 27.9 bits (61), Expect = 4.4
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNS 267
+ SL I + ED G Y
Sbjct: 78 QKKNCSLSIGDARMEDTGSYFFRVERG 104
Score = 27.9 bits (61), Expect = 4.4
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNS 317
+ SL I + ED G Y
Sbjct: 78 QKKNCSLSIGDARMEDTGSYFFRVERG 104
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 29.6 bits (67), Expect = 0.49
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P+ ++ K+G P+ + D+ N + Q + P Y C
Sbjct: 33 PKISITLMKDGVPMEGAQYSDM-SFNDDWTFQRLVHADFTPSSGSTYACK 81
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 30.8 bits (70), Expect = 0.49
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPA 334
+L+I V ED GVY C + + GT KL ++ A
Sbjct: 196 FTLKISRVEAEDLGVYYCFQGSHVPYTFGGGT-----KLEIKRAAA 236
Score = 28.1 bits (63), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLG 269
+L+I V ED GVY C + +
Sbjct: 196 FTLKISRVEAEDLGVYYCFQGSHVP 220
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 31.2 bits (71), Expect = 0.53
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 90 NFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTN 147
L R + R P I E S+ T + ++S L + S+
Sbjct: 306 CCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVG 363
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 29.2 bits (66), Expect = 0.56
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P + KNG+ + + D+ + S I E P + Y C
Sbjct: 33 PHIEIQMLKNGKKIPKVEMSDM-SFSKDWSFYILAHTEFTPTETDTYACR 81
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 30.6 bits (69), Expect = 0.56
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P ++W NGQ + S P + +Y C
Sbjct: 118 PVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK 167
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 29.6 bits (67), Expect = 0.57
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-----------KLTV--RSTPA 334
SL+I ++ +D G Y C + G+ + C +TV +
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVVTVNAAAHHH 118
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
SL+I ++ +D G Y C + G+ + C
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGSYDAVC 96
Score = 28.5 bits (64), Expect = 1.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 20 WY-----KGNRELSKRD--YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
WY N E Y + S+ I D +DSG Y+C +++G+ +
Sbjct: 36 WYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAV 95
Query: 71 C 71
C
Sbjct: 96 C 96
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.61
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 74 IVESEEESKEQQ----ELAHNFLYSGDRKY---IEKHIRPAPAIITTRQEIKSSYSSHTD 126
+ E + SK + E A L +++ +EK+ R K+ Y
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI------NNRIADKAFYQQPDA 151
Query: 127 DT 128
D
Sbjct: 152 DI 153
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.5 bits (66), Expect = 0.62
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 20/68 (29%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGV--------------------VSMEIIDCKP 50
+ + T W +G S ++ +++G VS+ I +
Sbjct: 23 TYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVE 82
Query: 51 EDSGEYKC 58
DSG Y C
Sbjct: 83 SDSGLYCC 90
Score = 29.1 bits (65), Expect = 0.82
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA 335
G SL I+ D G+Y C + K +++ P
Sbjct: 69 SEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEL 113
Score = 28.7 bits (64), Expect = 1.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 241 KNGVASLQIQEVFPEDEGVYVC 262
G SL I+ D G+Y C
Sbjct: 69 SEGDVSLTIENSVESDSGLYCC 90
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 29.6 bits (67), Expect = 0.66
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC----KLTPLNSSNILDLKYKN 292
+L IQ + ED G+Y C +L L S + LK +N
Sbjct: 77 YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRN 128
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC----KLTV--RSTPA 334
+L IQ + ED G+Y C +L V ST
Sbjct: 77 YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLD 122
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 30.4 bits (69), Expect = 0.67
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKESDK 347
+L+I V ED GVY C+ + + GT KL ++S+ + K+ K
Sbjct: 90 FTLKINRVEAEDLGVYFCSQSTHVPWTFGGGT-----KLEIKSSADDAKKDAAKKDDAK 143
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 30.8 bits (70), Expect = 0.68
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I V ED VY C + GT KL ++
Sbjct: 235 FTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT-----KLEIKHHHHH 276
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 30.2 bits (68), Expect = 0.71
Identities = 7/56 (12%), Positives = 13/56 (23%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
T + K + I + +G Y+C + G
Sbjct: 28 GTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83
Score = 27.9 bits (62), Expect = 4.0
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 215 GDPE-PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272
G E K P L+ KN A I + + G Y C + +G ++
Sbjct: 28 GTLEAREYRLDKEESPAPWDRQNPLEPKN-KARFSIPSMTEDYAGRYRCYYRSPVGWSQ 85
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 29.2 bits (66), Expect = 0.72
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC----------KLTVR 330
SL+I ++ ED G Y C A S LTV+
Sbjct: 66 FSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGAGTVLTVK 111
Score = 28.1 bits (63), Expect = 1.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGT 270
SL+I ++ ED G Y C A S
Sbjct: 66 FSLRISDLRVEDSGTYKCQADYSPSC 91
Score = 27.7 bits (62), Expect = 2.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 17 TVKWY-----KGNREL-SKRD-YSMSYSDG--VVSMEIIDCKPEDSGEYKCVA 60
+ WY N + S Y + G S+ I D + EDSG YKC A
Sbjct: 33 STTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 30.3 bits (69), Expect = 0.74
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I V +D Y C +N + GT KL ++
Sbjct: 207 FTLTINPVEADDVATYFCQRSNEVPWTFGGGT-----KLEIKRPLEH 248
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.6 bits (67), Expect = 0.77
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 291 KNG-VASLQIQEVFPEDEGVYVCTATNSLGTAETK---CKLTV--RSTPAANLGKSPSKE 344
+N +A+L IQ + ED G+Y C + + + +L V ST A ++ K+
Sbjct: 75 QNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKD 134
Score = 28.9 bits (65), Expect = 1.3
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 241 KNG-VASLQIQEVFPEDEGVYVCTATNSLGTAETK---CKLTPLNSSNILDLKYKN 292
+N +A+L IQ + ED G+Y C + + + +L + S + LK +N
Sbjct: 75 QNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRN 130
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 30.3 bits (69), Expect = 0.77
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPA 334
+L I + PED VY C ++ GT K+ V+S
Sbjct: 205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGT-----KVEVKSGLV 245
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 30.3 bits (69), Expect = 0.80
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL-------GTAETKCKLTVRSTPAA 335
A+L I + DE Y C +S GT KL ++ T AA
Sbjct: 72 ATLGITGLQTGDEADYYCGTWDSSLNPVFGGGT-----KLEIKRTVAA 114
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 30.7 bits (70), Expect = 0.80
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKH 103
E + + + Y+ V T + D + VE E+ ++ +
Sbjct: 350 EQLLKQRALAPHYQIVLTKEGPLDV--LTLNVEPCPETAPDTAAIQVA-----KQALAYD 402
Query: 104 IR 105
I+
Sbjct: 403 IK 404
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 30.3 bits (69), Expect = 0.83
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL--------GTAETKCKLTVRSTPAANLGKSPSKESD 346
ASL I + EDE Y C ++ GT KLTV + + + +
Sbjct: 74 ASLAITGLQSEDEADYYCQVRDNNENEWVFGGGT-----KLTVLGSGGSTITSYNVYYTK 128
Query: 347 KAP 349
+
Sbjct: 129 LSS 131
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 29.1 bits (65), Expect = 0.84
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNS-LGTAETKCKLTV 329
Y N SL IQ + D G Y S L E + V
Sbjct: 69 YPNA--SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
Score = 26.5 bits (58), Expect = 7.0
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNS-LGTAETKCKLT 278
Y N SL IQ + D G Y S L E +
Sbjct: 69 YPNA--SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFR 106
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 30.6 bits (69), Expect = 0.85
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 168 SPSRSRSTTKELIMPPDTAMTPPQ---FANKLTDKTIDDGQCLDLSAVVKG----DPEPR 220
P T P + P F K D T+ + +++ VV DPE +
Sbjct: 226 EPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKD-TLMISRTPEVTCVVVDVSHEDPEVK 284
Query: 221 VSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDEGVYVCTATN 266
+W +G ++++ + + V+ L + + Y C +N
Sbjct: 285 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 335
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 29.2 bits (65), Expect = 0.87
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKC 58
K S + R ++ +++ G ++ + D + EDSG Y C
Sbjct: 48 KEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWC 101
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 30.2 bits (68), Expect = 0.91
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P ++W +N + + + N S P D+ +Y C
Sbjct: 149 PVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 198
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 29.0 bits (65), Expect = 0.91
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVC 262
P + KNG+ + + D+ + S I E P + Y C
Sbjct: 53 PHIEIQMLKNGKKIPKVEMSDM-SFSKDWSFYILAHTEFTPTETDTYAC 100
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 30.5 bits (68), Expect = 0.92
Identities = 30/169 (17%), Positives = 46/169 (27%), Gaps = 30/169 (17%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPL---------------------NSSNILDLKYKN 242
G C+D + V G EPR+ +G+ L S +
Sbjct: 233 GTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASE 292
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN--SSNILDLKYKNGVASLQIQ 300
+ P EG C A P S L A ++++
Sbjct: 293 SPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352
Query: 301 EVFPEDEG-----VYV--CTATNSLGTAETKCKLTVRSTPAANLGKSPS 342
P+D G VY C C+ +VR + + S
Sbjct: 353 WTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTS 401
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 29.7 bits (67), Expect = 0.93
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P V+W +NG+P+ + + + P E VY C
Sbjct: 130 PVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 179
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 30.0 bits (68), Expect = 0.97
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAET---KCKLTVRSTPAAN 336
ASL I + PEDE Y C+ +S +A KLTV P A
Sbjct: 211 ASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAA 255
Score = 28.8 bits (65), Expect = 2.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET 273
ASL I + PEDE Y C+ +S +A
Sbjct: 211 ASLTITGLQPEDEADYYCSTWDSSLSAVV 239
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 0.98
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
SL I + P D Y C A+++ +L V+
Sbjct: 73 SLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPN 109
Score = 27.9 bits (62), Expect = 3.8
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPE 305
SL I + P D Y C A+++ +L NI + + A Q+++ P
Sbjct: 73 SLHIADSQPGDSATYFCAASDNRIFFGDGTQLV--VKPNIQNPE----PAVYQLKD--PR 124
Query: 306 DEGVYVCTATN 316
+ +C T+
Sbjct: 125 SQDSTLCLFTD 135
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 28.4 bits (64), Expect = 1.0
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVC 262
+ V KNG+ + DL + S + E P ++ Y C
Sbjct: 34 SDIEVDLLKNGERIEKVEHSDL-SFSKDWSFYLLYYTEFTPTEKDEYAC 81
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.8 bits (65), Expect = 1.0
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTVR 330
ASL I+++ ED G Y C A LTV+
Sbjct: 66 ASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVLTVK 108
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 245 ASLQIQEVFPEDEGVYVCTA 264
ASL I+++ ED G Y C A
Sbjct: 66 ASLTIRDLRVEDSGTYKCKA 85
Score = 26.5 bits (59), Expect = 7.0
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 18 VKWY-----KGNREL-SKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
WY + S YS + S+ I D + EDSG YKC A + +
Sbjct: 34 TNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNT 93
Query: 69 TNCVV 73
Sbjct: 94 GVGYK 98
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 29.9 bits (68), Expect = 1.0
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 11/46 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPA 334
SL I + ED Y C +S GT KL ++ P
Sbjct: 212 YSLTISSMEAEDAASYFCHQWSSFPFTFGSGT-----KLEIKRAPH 252
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKESD 346
+L I + PED Y C + GT K+ ++ ++
Sbjct: 82 FTLTISSLQPEDFATYYCQQHYTTPPTFGCGT-----KVEIKGGGGGSIEGRSGGGGS 134
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAET---KCKLTVRSTPAA 335
+L I ++ D Y C +T T + ++ V+ P A
Sbjct: 71 FTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVA 114
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 30.3 bits (69), Expect = 1.1
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKH 103
+I+ PE Y + DE +V VE + S + R+ I +
Sbjct: 348 KILVQFPELGSNYLITLETVNNQDE--MIVEVELSDLSTDNYIELEKI-----RRDIIRQ 400
Query: 104 IR 105
++
Sbjct: 401 LK 402
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 29.9 bits (67), Expect = 1.1
Identities = 7/62 (11%), Positives = 13/62 (20%), Gaps = 1/62 (1%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276
G + + + I ++ G Y C +E
Sbjct: 33 GAVEYQLHFEGSLF-AVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL 91
Query: 277 LT 278
L
Sbjct: 92 LD 93
Score = 29.5 bits (66), Expect = 1.6
Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 15/188 (7%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
+ + + V I D +G+Y C+ E +
Sbjct: 30 GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS 89
Query: 71 CVVIVESEEESKEQQELAH--NFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDT 128
++ + E H + SG++ + A ++ +E +SS+
Sbjct: 90 NLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGK 149
Query: 129 GRTTTQMSTLSSN--------YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI 180
+ + +++ S + + + PS+ + +L T + ++
Sbjct: 150 VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVK-----LLVTGDIENTSLAPEDPT 204
Query: 181 MPPDTAMT 188
P DT T
Sbjct: 205 FPADTWGT 212
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 5/98 (5%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
++ KN L + I + G Y C
Sbjct: 35 EAYLTQLMIIKNSTYREIGRRLKFWNET-DPEFVIDHMDANKAGRYQCQYRIGHYRFRYS 93
Query: 275 CKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
L + + L K +++ + + P + C
Sbjct: 94 DTLELV----VTGLYGKPFLSADRGLVLMPGENISLTC 127
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P V+W NG+ + L S P E Y C
Sbjct: 115 PVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDFYDCR 164
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 29.3 bits (65), Expect = 1.3
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATN 62
TV +G +EL + + + + + G ++ C
Sbjct: 117 AQLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGAQFSCRTEL 163
Score = 28.1 bits (62), Expect = 3.2
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 278 TPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
TPL +L N ++ V +++ +C + G + K LTV TP
Sbjct: 35 TPLPKKELLL--PGNNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTP 86
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 29.4 bits (66), Expect = 1.4
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P ++W +N + + + N S P D+ +Y C
Sbjct: 119 PVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 168
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 29.7 bits (65), Expect = 1.4
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 9/54 (16%)
Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
E ++WT + + +L IQ D G Y C +
Sbjct: 30 TPEEDGITWTLDQSSEVLGSG---------KTLTIQVKEFGDAGQYTCHKGGEV 74
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.5 bits (64), Expect = 1.5
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
++ + ++ ++++ D G+Y C T K + + P
Sbjct: 70 RDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
Score = 27.0 bits (60), Expect = 4.1
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 13 KPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
+ T+ + +L K++ S+ D + ++ + D + D+G Y C K G D
Sbjct: 43 RSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC-GITKGGLD 99
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
I+ + ED Y C +++L GT L ++ AA
Sbjct: 93 FVFTIENMLSEDVADYYCLQSDNLPYTFGGGT-----NLEIKRADAA 134
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.5 bits (66), Expect = 1.6
Identities = 31/254 (12%), Positives = 69/254 (27%), Gaps = 44/254 (17%)
Query: 15 PPTVKWYKGNRELSKRDY------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
P +V W + + ++ R++ S + + + C + +
Sbjct: 158 PLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 217
Query: 69 TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAII---------------TT 113
V S + RPA +
Sbjct: 218 DVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRL-SLHRPALEDLLLGSEANLTCTLTGLRD 276
Query: 114 RQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSST---------NNATSPSKKITRRMNSIL 164
+ +++ + + L YS S+ N+ + + +
Sbjct: 277 ASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP 336
Query: 165 DTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP-RVS 222
T + S+S +T P+ + PP ++ + L+ + +G P+ V
Sbjct: 337 LTATLSKSGNTF-----RPEVHLLPPPSEELALNELVT------LTCLARGFSPKDVLVR 385
Query: 223 WTKNGQPLNSSNIL 236
W + Q L L
Sbjct: 386 WLQGSQELPREKYL 399
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P V+W +NG+P+ + + + P E VY C
Sbjct: 115 PVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 164
>2qya_A Uncharacterized conserved protein; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.17A
{Methanopyrus kandleri AV19}
Length = 124
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 233 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL 286
++L ++ K +L I E F + + A + A + + + N L
Sbjct: 24 EDLLGVELKYKGRTLHISEPFYSGKSMEPDRAAKKIREAVQEYEDEKTVAINAL 77
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 KNGVASLQIQEVFPEDEGVYVC 262
+ G SL I D GVY C
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCC 90
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 291 KNGVASLQIQEVFPEDEGVYVC 312
+ G SL I D GVY C
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCC 90
Score = 28.0 bits (62), Expect = 2.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRD--YSM--SYSDGVVSMEIIDCKPEDSGEYKC 58
K ++K + G R +S++ Y++ G VS+ I + DSG Y C
Sbjct: 34 KGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.5 bits (66), Expect = 1.8
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 11/155 (7%)
Query: 122 SSHTDDTGRTTTQMSTLSSNYSSST-----NNATSPSKKITRRMNSILDTDSPSRSRSTT 176
+ D ++ ++ SS + S + + S +K + +
Sbjct: 173 AVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPA 232
Query: 177 KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL 236
L+ P + PP+ + L C+ + V + DP+ ++SW N ++++
Sbjct: 233 PNLLGGPSVFIFPPKIKDVLMISLSPIVTCV-VVDVSEDDPDVQISWFVNNVEVHTAQTQ 291
Query: 237 D-LKYKNG----VASLQIQEVFPEDEGVYVCTATN 266
+ N V++L IQ + C N
Sbjct: 292 THREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNN 326
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.0 bits (65), Expect = 1.8
Identities = 6/56 (10%), Positives = 12/56 (21%), Gaps = 1/56 (1%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272
G + + + I ++ G Y C +E
Sbjct: 30 GAVEYQLHFEGSLF-AVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 84
Score = 27.1 bits (60), Expect = 6.7
Identities = 6/55 (10%), Positives = 12/55 (21%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
+ + + V I D +G+Y C+
Sbjct: 27 GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.9 bits (62), Expect = 1.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 37 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
G++ +E++ + ED+GEY C+ G
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQ 94
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 11/46 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPA 334
SL I + ED Y C +S GT KL ++ A
Sbjct: 231 YSLTISRMEAEDAATYYCQQRSSYPLTFGAGT-----KLELKRAAA 271
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 29.0 bits (64), Expect = 1.9
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 8 KVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP--EDSG-EYKCVATN 62
+V + +P T+ ++GN L + + + + ED + C+A
Sbjct: 111 RVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL 170
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 2.1
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334
KN ++ ++++ D Y C + ++T+ P
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPV 114
Score = 26.8 bits (59), Expect = 6.3
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 8 KVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKH 64
+ + + G+ + KRD S+ + ++ + D D+ Y C K
Sbjct: 39 RGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWC-GIEKT 97
Query: 65 GTDET 69
G D
Sbjct: 98 GNDLG 102
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 27.8 bits (61), Expect = 2.1
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 10 GSTKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
GS + + WY S +S + G ++ I K +DSG Y TN G
Sbjct: 42 GSHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKV 101
Query: 68 ETNCVVI 74
+
Sbjct: 102 CNKNFQL 108
Score = 27.8 bits (61), Expect = 2.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 221 VSWTKNGQPLNS----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
++W N P S S+I Y + +L I+ +D G Y+ TN+ G K
Sbjct: 50 LNW-YNDGPSWSNVSFSDIYGFDYGD--FALSIKSAKLQDSGHYLLEITNTGGKVCNKN 105
Score = 26.3 bits (57), Expect = 8.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 282 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 325
S+I Y + +L I+ +D G Y+ TN+ G K
Sbjct: 64 FSDIYGFDYGD--FALSIKSAKLQDSGHYLLEITNTGGKVCNKN 105
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 28.9 bits (64), Expect = 2.1
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P V+W + P+ + S Q PE ++ C
Sbjct: 129 PMLTVNWQHHSVPVEGFGPTFV-SAVDGLSFQAFSYLNFTPEPSDIFSCI 177
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.0 bits (65), Expect = 2.2
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTVRS 331
+L I + ED Y C SL A+ ++TV
Sbjct: 209 VALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEP 250
Score = 27.5 bits (61), Expect = 6.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 245 ASLQIQEVFPEDEGVYVC 262
+ ++ + D GVY C
Sbjct: 79 LRMILRNLIENDSGVYYC 96
Score = 27.5 bits (61), Expect = 6.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 295 ASLQIQEVFPEDEGVYVC 312
+ ++ + D GVY C
Sbjct: 79 LRMILRNLIENDSGVYYC 96
Score = 27.5 bits (61), Expect = 6.5
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTA 271
+L I + ED Y C SL A
Sbjct: 209 VALTISALQLEDSAKYFCALGESLTRA 235
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 29.1 bits (65), Expect = 2.2
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC------KLTVRSTPAANLGKSPS 342
L++Q CT++ T + KLTV +
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVA 127
Score = 27.2 bits (60), Expect = 8.2
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGT 270
L++Q CT++ T
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWT 99
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDEGVY 260
C+ + + + DPE R SW + ++++ + ++ V+ L I E + +
Sbjct: 39 CV-VVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF 97
Query: 261 VCTATNS 267
C +
Sbjct: 98 KCKVNSG 104
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 29.2 bits (66), Expect = 2.3
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 18/60 (30%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNK 63
K+++ ++ Y+ GV +S I D + S Y + +
Sbjct: 46 KIQIMPKCTLAG-----------FNWFNAYYTPGVSRISTNIRD-NNDSSLFY----SLR 89
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.0 bits (62), Expect = 2.4
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK---LTVRSTP 333
+ +L I++ D G Y K + V +
Sbjct: 84 QTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT 129
Score = 27.6 bits (61), Expect = 3.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATN 266
+ +L I++ D G Y
Sbjct: 84 QTKNCTLSIRDARMSDAGRYFFRMEK 109
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 28.7 bits (65), Expect = 2.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I V ED G+Y C +NS GT KL ++ AA
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGT-----KLEIKRADAA 112
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCT 263
P+ + KNG+ + + DL + PE Y C+
Sbjct: 33 PDISIELLKNGEVIADAQQTDL-AFEKGWQFHLTKSVSFKPEKSDEYSCS 81
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 28.6 bits (65), Expect = 2.8
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 23/72 (31%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNK 63
K++V T K D S++Y+ GV VS I + + T K
Sbjct: 21 KLEVQPKVDIKT-----------KHDLSIAYTPGVASVSSAIAK-DKTLAYDL----TTK 64
Query: 64 HGTDETNCVVIV 75
N V ++
Sbjct: 65 K-----NTVAVI 71
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 28.4 bits (64), Expect = 2.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTVRSTPAA 335
L I + PEDE +Y+C +++ K+TV P +
Sbjct: 75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKS 120
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 28.5 bits (64), Expect = 2.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L+I V ED GVY C + + GT KL ++ AA
Sbjct: 109 FTLRISRVEAEDLGVYYCFQASLVPLTFGAGT-----KLELKRADAA 150
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 28.6 bits (65), Expect = 2.9
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 23/72 (31%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNK 63
K++ + S+ Y+ GV V+ + PE + Y T++
Sbjct: 25 KIRTALPVEKVD-----------RETLSLLYTPGVADVARACAE-DPEKTYVY----TSR 68
Query: 64 HGTDETNCVVIV 75
N V +V
Sbjct: 69 W-----NTVAVV 75
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 28.8 bits (65), Expect = 3.2
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKH 103
EI+ P SG+++ + D + VE E+ + + ++
Sbjct: 352 EIVVALPLLSGQFQITLSRDGHMDR--LDLAVELRSEAAASVTDGE---RAALARELQHR 406
Query: 104 IR 105
I+
Sbjct: 407 IK 408
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC,
immune system; HET: NAG; 2.40A {Mus musculus} SCOP:
b.1.1.1 PDB: 3b9k_B*
Length = 115
Score = 27.5 bits (62), Expect = 3.3
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
+ S L I V PED Y C S
Sbjct: 74 SDSRRP---------FLSIMNVKPEDSDFYFCATVGS 101
Score = 27.5 bits (62), Expect = 3.3
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 281 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
+ S L I V PED Y C S
Sbjct: 74 SDSRRP---------FLSIMNVKPEDSDFYFCATVGS 101
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 3.4
Identities = 8/58 (13%), Positives = 13/58 (22%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
T + K + I +G Y+C + G E
Sbjct: 28 GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSE 85
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold,
fluorogen activation, dimethylindole RE binding protein;
HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A*
3lrg_A 3lrh_A 2rhe_A
Length = 123
Score = 27.5 bits (62), Expect = 3.4
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 295 ASLQIQEVFPEDEGVYVCTA-TNSL-------GTAETKCKLTVRSTPAAN 336
ASL I + EDE Y C + +SL GT K+TV +
Sbjct: 72 ASLAISGLRSEDEADYYCLSWDDSLNGWVFGGGT-----KVTVLDAASGA 116
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 27.9 bits (63), Expect = 3.5
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I V +D +Y C + + GT KL ++ AA
Sbjct: 70 FTLTIDPVEADDTAIYFCQQSWNGPLTFGAGT-----KLELKRADAA 111
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.1 bits (62), Expect = 3.6
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTA---ETKCKLTVRSTPAANLGKSPSKE 344
L + + E+EG Y C+ ++ V ST + ++PS
Sbjct: 90 YVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPV 142
Score = 27.7 bits (61), Expect = 3.9
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNS 267
L + + E+EG Y C+ ++
Sbjct: 90 YVLTLNKFSKENEGYYFCSVISN 112
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.5 bits (61), Expect = 3.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 37 SDGVVSMEIIDCKPEDSGEYKCV 59
G++ + +++ + EDSG Y+CV
Sbjct: 77 DHGLLRVRMVNLQVEDSGLYQCV 99
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.3 bits (63), Expect = 3.7
Identities = 10/57 (17%), Positives = 14/57 (24%), Gaps = 2/57 (3%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKHG 65
S +K DGV I +G Y+C + H
Sbjct: 142 SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHT 198
Score = 27.5 bits (61), Expect = 6.3
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
YK +R + + S + +G Y C ++ H
Sbjct: 47 YRHRFNNFMLYKEDRIHIPIFHGRIFQ---ESFNMSPVTTAHAGNYTCRGSHPH 97
Score = 27.5 bits (61), Expect = 7.2
Identities = 6/55 (10%), Positives = 15/55 (27%)
Query: 11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
S + +R ++ + + G Y+C + +H
Sbjct: 242 SRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHS 296
>3r4d_B Spike glycoprotein; immunoglobulin, beta-sandwich, mceacam1A -
immunoglobulin FO spike NTD - galectin-like
beta-sandwich fold; HET: NAG; 3.10A {Murine hepatitis
virus}
Length = 288
Score = 28.3 bits (62), Expect = 3.7
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 17 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
+++ L KR Y +++ V +DC + E KC + H
Sbjct: 241 APRYWVTP--LVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTHHHH 286
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity,
multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1
PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L*
1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Length = 120
Score = 27.1 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAAN 336
A+L I EDE +Y C S GT KLTV P ++
Sbjct: 73 AALTITGAQTEDEAIYFCALWYSNHLVFGGGT-----KLTVLGQPKSS 115
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 28.3 bits (63), Expect = 3.9
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKESD 346
+L I V ED G+Y C +NS GT KL + + G S SD
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSXPYTFGGGT-----KLEITGGGGSGGGGSGGGGSD 123
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.1 bits (62), Expect = 3.9
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL-TPLNSSNILDLKYKNGVASL 297
N SL+IQ D +Y+C ++ + T L L + VA
Sbjct: 95 CPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF 154
Query: 298 Q--IQEVFPEDEGVYVCTATNS 317
+ E+ + VC AT
Sbjct: 155 EPSEAEISHTQKATLVCLATGF 176
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 28.0 bits (63), Expect = 3.9
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKESD 346
+L+I V ED G+Y C + GT KL ++ + G S S+
Sbjct: 76 FTLKISRVEAEDLGIYYCFQGSHFPPTFGGGT-----KLEIKGGGGSGGGGSGGGGSE 128
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 28.3 bits (63), Expect = 3.9
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 204 GQCLDLSAVVKG----DPEPRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFP 254
++ VV DPE + SW + ++++ + + V++L I
Sbjct: 245 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW 304
Query: 255 EDEGVYVCTATN 266
+ + C +
Sbjct: 305 LNGKEFKCRVNS 316
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 27.7 bits (62), Expect = 4.0
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 297 LQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRS-TPAANLGKSPSKESDKAP 349
L I V PED Y C S GT KLTV P K + + K
Sbjct: 84 LSIMNVKPEDSDFYFCATVGSPKMVFGTGT-----KLTVVDVLPTTAPTKKTTLKMKKKK 138
Query: 350 R 350
+
Sbjct: 139 Q 139
Score = 26.5 bits (59), Expect = 9.3
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 247 LQIQEVFPEDEGVYVCTATNS 267
L I V PED Y C S
Sbjct: 84 LSIMNVKPEDSDFYFCATVGS 104
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.2 bits (60), Expect = 4.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
+NG + I ++ +D G Y C + L V
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 37 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV-VIVESEEE 80
+G + I +DSG YKC + + V + V
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKC-GLGINSRGLSFDVSLEVLEHHH 114
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.3 bits (63), Expect = 4.1
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC------KLTVRSTPAANLGKSPS 342
++L + PED Y+C+A + A + +LTV +
Sbjct: 100 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVA 153
Score = 27.5 bits (61), Expect = 7.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 245 ASLQIQEVFPEDEGVYVC 262
++L + PED Y+C
Sbjct: 100 STLTVTSAHPEDSSFYIC 117
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVC 262
+ V KNG+ + DL + S + E P ++ Y C
Sbjct: 53 SDIEVDLLKNGERIEKVEHSDL-SFSKDWSFYLLYYTEFTPTEKDEYAC 100
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 28.0 bits (63), Expect = 4.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAAN 336
A+L I EDE +Y C ++ GT KLTV P ++
Sbjct: 73 AALTITGAQTEDEAIYFCALWSNNKLVFGGGT-----KLTVLGQPKSS 115
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 27.2 bits (60), Expect = 4.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 246 SLQIQEVFPEDEGVYVCTATNS 267
L + + E+EG Y C+ ++
Sbjct: 86 VLTLNKFSKENEGYYFCSVISN 107
Score = 27.2 bits (60), Expect = 4.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 296 SLQIQEVFPEDEGVYVCTATNS 317
L + + E+EG Y C+ ++
Sbjct: 86 VLTLNKFSKENEGYYFCSVISN 107
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNS 267
++L + PED Y+C+A S
Sbjct: 77 STLTVTSAHPEDSSFYICSARTS 99
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNS 317
++L + PED Y+C+A S
Sbjct: 77 STLTVTSAHPEDSSFYICSARTS 99
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+S I + ED G Y C + GT KL ++ A
Sbjct: 71 SSFTISSLESEDIGSYYCQQYYNYPWTFGPGT-----KLEIKRADAK 112
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 27.9 bits (62), Expect = 4.5
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-----YKNGVASLQIQEVFPEDEGVY 260
C+ + + K DPE + SW + ++++ + V+ L I + +
Sbjct: 25 CV-VVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF 83
Query: 261 VCTATNS 267
C ++
Sbjct: 84 KCRVNSA 90
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.1 bits (60), Expect = 4.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 286 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
+ L+ NG +L I V ED+G Y E K L V
Sbjct: 66 VYLEENNG--ALHISNVRKEDKGTYYMRVLRE-TENELKITLEVF 107
Score = 26.4 bits (58), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
+ L+ NG +L I V ED+G Y
Sbjct: 66 VYLEENNG--ALHISNVRKEDKGTYYMRVLRE 95
>2r01_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Length = 210
Score = 27.7 bits (62), Expect = 5.1
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTT 132
+ V + S + Y D E RPA A++ + ++ D+G
Sbjct: 61 LPVTGADMSDKVFPCLKWAGYLEDWPGPEPGERPAAALVMLCRNEDLPGAAC--DSGIAA 118
Query: 133 TQM 135
+
Sbjct: 119 QTI 121
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 27.9 bits (63), Expect = 5.3
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 6 KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEIIDCKPEDSGEYKCVATNK 63
K++V + + + +++Y+ GV EI P EY T+K
Sbjct: 19 KIEVIPKVSLES-----------REELTLAYTPGVAEPCKEIAR-DPGKVYEY----TSK 62
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.0 bits (60), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 245 ASLQIQEVFPEDEGVYVCTATNS 267
SL+I ++ ED G Y C A
Sbjct: 66 FSLRISDLRVEDSGTYKCQAFYV 88
Score = 27.0 bits (60), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNS 317
SL+I ++ ED G Y C A
Sbjct: 66 FSLRISDLRVEDSGTYKCQAFYV 88
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 27.8 bits (62), Expect = 5.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGT----AETKCKLTV 329
L ++ P +Y C ++++ G + KLTV
Sbjct: 210 FFLTLESASPSQTSLYFCASSDAPGQLYFGEGS--KLTV 246
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 27.6 bits (61), Expect = 5.9
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 13/130 (10%)
Query: 159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
+ T + P + A T+ C P
Sbjct: 93 KFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFT-CE----SHGFSPR 147
Query: 219 P-RVSWTKNGQPLNSSNIL------DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
+ W KNG L+ + Y + ++ ++ + +C +
Sbjct: 148 DITLKWFKNGNELSDFQTNVDPVGESVSY-SIHSTAKVVLTREDVHSQVICEVAHVTLQG 206
Query: 272 ETKCKLTPLN 281
+ L+
Sbjct: 207 DPLRGTANLS 216
Score = 27.2 bits (60), Expect = 9.8
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 292 NGVASLQIQEVFPEDEGVYVCTATNS-----LGTAETKCKLTVRSTPAANLGKSPSKES 345
N S+ I + P D G Y C + +L+VR+ P+A + P+ +
Sbjct: 71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARA 129
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 26.6 bits (59), Expect = 6.0
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAE----TKCKLTV 329
+ I + D G+Y+C A + + +L V
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVV 111
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 27.7 bits (61), Expect = 6.1
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKY 240
++ P + K+ CL + + +++W++ +G+P+N S + K
Sbjct: 112 GVSAYLSRPSPFDLFIRKSPT-ITCL-VVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQ 169
Query: 241 KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
+NG ++L + + Y C T+ T
Sbjct: 170 RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTT 211
Score = 27.7 bits (61), Expect = 6.2
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 217 PEP-RVSWTKNGQPLNSSNILD-LKYKNGVAS----LQIQEVFPEDEGVYVCTATNSLGT 270
P +++W ++GQ ++ + +AS L + + + Y C T T
Sbjct: 38 PGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT 97
Query: 271 AETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
E K ++ ++ ++F C +
Sbjct: 98 FEDSTKKCADSNPR----GVSAYLSRPSPFDLFIRKSPTITCLVVDL 140
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 27.3 bits (61), Expect = 6.5
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC--------KLTVRSTPAANLGKSPS 342
A L+I DEG Y C E ++TV + PS
Sbjct: 75 AVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPH--TKPS 128
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.5 bits (61), Expect = 6.8
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKC------KLTVRSTPAANLGKSPS 342
L +++ D G Y+C + S+G LTV +
Sbjct: 75 ILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVA 127
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 27.4 bits (61), Expect = 7.4
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L+I V ED G+Y C + GT KL ++ AA
Sbjct: 113 FTLKISRVEAEDLGIYYCVQGSHFPPTFGAGT-----KLELKRADAA 154
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 27.2 bits (60), Expect = 7.4
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNIL-DLKYKNG----VASLQIQEVFPEDEGVYVCT 263
+ V DPE + +W +G ++++ + N V+ L + + Y C
Sbjct: 48 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 107
Query: 264 ATNS 267
+N
Sbjct: 108 VSNK 111
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.4 bits (61), Expect = 7.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
+L I + PED Y C N+ T KL +++
Sbjct: 209 YTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKA 245
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 27.2 bits (60), Expect = 7.4
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL-DLKYKNG----VASLQIQEVFPEDEGVY 260
C+ + V + DP+ ++SW N ++++ + N V++L IQ +
Sbjct: 33 CV-VVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEF 91
Query: 261 VCTATNS 267
C N
Sbjct: 92 KCKVNNK 98
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.2 bits (60), Expect = 7.5
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDEGVY 260
C+ + V DPE + +W +G ++++ + + V+ L + + Y
Sbjct: 25 CV-VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 83
Query: 261 VCTATNS 267
C +N
Sbjct: 84 KCKVSNK 90
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 27.3 bits (61), Expect = 7.5
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKES 345
+L I V ED VY C ++ GT +L ++ + G
Sbjct: 81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGT-----RLEIKRGGGGSGGGGSGGGG 132
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 27.3 bits (61), Expect = 7.8
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPS 342
+L I + PED Y C +S GT KL ++ A G
Sbjct: 71 FTLTISSLQPEDIATYYCQQGHSYPYTFGGGT-----KLDIKRADAGGGGSGGG 119
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 11 STKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKH 64
S K G E + S ++ G + P Y+C A + +
Sbjct: 124 SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN 180
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 27.2 bits (61), Expect = 8.3
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAANLGKSPSKES 345
SL I + ED G Y C N+L GT KL +R + G
Sbjct: 74 YSLTISNLEQEDIGTYFCQQGNTLPWTFGGGT-----KLEIRRGGGGSGGGGSGGGG 125
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 25.8 bits (56), Expect = 8.4
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
D + + W KNGQ L + L ++ EV ED G YVC S
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDF------SEV--EDSGYYVCYTPAS 67
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule,
chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Length = 130
Score = 26.6 bits (58), Expect = 8.5
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQE 251
+ + R+SW KNG+ + + D +Y + ++ +
Sbjct: 25 PPAEGQSRISWIKNGEEILGA---DTQYGSEGSMNRPTVSVLR 64
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 27.2 bits (61), Expect = 8.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 295 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVRSTPAA 335
+L I + PED Y C + + GT K+ ++ T AA
Sbjct: 94 FTLTISSLQPEDFATYYCQQSYTTPPTFGQGT-----KVEIKRTVAA 135
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 26.3 bits (58), Expect = 8.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 37 SDGVVSMEIIDCKPEDSGEYKCV 59
G++ + +++ + EDSG Y+CV
Sbjct: 72 DHGLLRVRMVNLQVEDSGLYQCV 94
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 26.9 bits (60), Expect = 8.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 220 RVSWTKNGQPLNSSNIL-DLKYKNGVASLQIQ---EVFPEDEGVYVC 262
++W KNG+ + + NG + Q + P Y C
Sbjct: 128 TITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTC 174
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 26.1 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAE------TKCKLTV 329
+L I++ ED G Y C A S G+ + T +LTV
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGT--QLTV 109
Score = 26.1 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAE 272
+L I++ ED G Y C A S G+ +
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSGSWQ 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.354
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,004,752
Number of extensions: 282870
Number of successful extensions: 2551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1942
Number of HSP's successfully gapped: 1252
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.1 bits)