BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12423
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 80/153 (52%), Gaps = 19/153 (12%)
Query: 127 LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI 186
L+ + S NQL +L S L + A NN+L SL + P+ LQ L +S N+L SLP
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPM--LPSGLQELSVSDNQLASLP--- 197
Query: 187 DTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
T P EL ++A +NR+T LP+ L L +S NRLTSLP L + LK L +
Sbjct: 198 -TLPSELYKLWAYNNRLTSLPALP-----SGLKELIVSGNRLTSLPVLPSE---LKELMV 248
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N + LP L S L L++ +N L LP
Sbjct: 249 SGNRLTSLPML----PSGLLSLSVYRNQLTRLP 277
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 106 LTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR 165
L TL+VS N + SL + LE + N L L S L + N+L SL V
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--L 139
Query: 166 PARLQHLDISYNELESLPDWIDTCP-ELETIFASHNRITQLPS-QFFCREL--------- 214
P LQ L +S N+L SLP P EL ++A +N++T LP +EL
Sbjct: 140 PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 215 -----GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI 269
+L+ L NRLTSLP+L + LK L + N + LP L S+LK L +
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----PSELKELMV 248
Query: 270 SKNCLKMLPSLQKGFYLLNI--SQL-RLP 295
S N L LP L G L++ +QL RLP
Sbjct: 249 SGNRLTSLPMLPSGLLSLSVYRNQLTRLP 277
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLP 206
+ +++ +N L SL P L+ L++S N+L SLP EL +IF+ N +T LP
Sbjct: 63 ITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLEL-SIFS--NPLTHLP 117
Query: 207 S--------QFFCRELGK-------LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
+ F +L L L +S N+L SLP+L ++ L Q S+
Sbjct: 118 ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 177
Query: 252 ILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287
+LP S L+ L++S N L LP+L Y L
Sbjct: 178 MLP-------SGLQELSVSDNQLASLPTLPSELYKL 206
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
L++ + L +LPD + + T+ N +T LP+ +L TL++S N+LTSLP
Sbjct: 45 LNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALP-----PELRTLEVSGNQLTSLP 97
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290
L + L SN + LP L S L L I N L LP L G L++S
Sbjct: 98 VLPPGLLELSIF---SNPLTHLPAL----PSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N++ LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 184 LYTIPKGFFGSHL 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 NLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N++ LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 184 LYTIPKGFFGSHL 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 NLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N++ LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 184 LYTIPKGFFGSHL 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 NLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 79
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 80 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 133
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N++ LP L L L + +N L +P
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 194 GSHLLPFAFLHGNPWLCNCEIL 215
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 132
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N L LP ++ L+T+ N
Sbjct: 133 KGNELKTLPPG-------LLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 185 LYTIPKGFFGSHL 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 117
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 118 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 160 NLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N + LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N+L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFF 210
+ +P FF
Sbjct: 184 LYTIPKGFF 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
++T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 QLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N + LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N+L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 184 LYTIPKGFFGSHL 196
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 DLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N + LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N+L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFF 210
+ +P FF
Sbjct: 184 LYTIPKGFF 192
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
++T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 QLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N++ LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFFCREL 214
+ +P FF L
Sbjct: 184 LYTIPKGFFGSHL 196
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
+T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 NLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N + LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N+L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFF 210
+ +P FF
Sbjct: 184 LYTIPKGFF 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
++T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 QLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
T L +SEN + + L L RL + R +L L ++G+ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
L LD+S+N+L+SLP T P L + S NR+T LP R LG+L L L
Sbjct: 79 -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L +L P L+ L+ L L +N + LP L L L + +N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
G +LL + L P CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 84 LTSVNLRSNQLKGTIILG-NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L +++L NQL+ +LG LT LDVS N + SL LGAL L +L+ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYL 131
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
G+ L ++ G +++P P +L+ L ++ N+L LP ++ L+T+ N
Sbjct: 132 KGNELKTLPPG-------LLTPTP-KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 202 ITQLPSQFF 210
+ +P FF
Sbjct: 184 LYTIPKGFF 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV 141
LT +NL +L + G L TLD+S N ++SL L L L + S N+L +L
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDT-CPELETIFASHN 200
L L+ L LQ L + NEL++LP + T P+LE + ++N
Sbjct: 117 LGA------------LRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
++T+LP+ L L TL L N L ++P L + FL N
Sbjct: 159 QLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
PA+ +LD+ N L+SLP+ + D L ++ N++ LP+ F +L L L LS
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLST 85
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N+L SLP+ + ++ LK L L +N + LP ++LK L + +N LK +P
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 22/146 (15%)
Query: 107 TTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI--VSP 164
T LD+ NS++SL G + L +SL + G NKLQSL V
Sbjct: 31 TYLDLETNSLKSLPNGVFDEL-----------------TSLTQLYLGGNKLQSLPNGVFN 73
Query: 165 RPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
+ L +L++S N+L+SLP+ + D +L+ + + N++ LP F +L +L L+L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-DKLTQLKDLRLY 132
Query: 224 FNRLTSLP-SLIRQIASLKYLFLQSN 248
N+L S+P + ++ SL+Y++L N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 220 LQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L N L SLP+ + ++ SL L+L N + LP + L LN+S N L+ LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 279 S 279
+
Sbjct: 93 N 93
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPS 207
SV + KL + I S PA + LD+ N+L SLP +L ++ + N++ LP+
Sbjct: 20 SVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 208 QFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
F +EL L TL ++ N+L +LP + Q+ +L L L N + LP + +KL
Sbjct: 79 GIF-KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 267 LNISKNCLKMLPSLQKGFY--LLNISQLRL 294
L++ N L+ LP KG + L ++ +LRL
Sbjct: 138 LSLGYNELQSLP---KGVFDKLTSLKELRL 164
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 32/159 (20%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRL---ESIKCSRNQLKTLVLNGSSLISVIAGNN 155
I NL TL V++N +++L +G ++L ++ RNQLK+L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL--------------- 124
Query: 156 KLQSLIVSPRP----ARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFF 210
PR +L +L + YNEL+SLP + D L+ + +N++ ++P F
Sbjct: 125 -------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 211 CRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
+L +L TL+L N+L +P + LK L LQ N
Sbjct: 178 -DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 218 HTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
+++ S +LT++PS I A K L LQSN ++ LP +KL++L ++ N L+ L
Sbjct: 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 278 PSLQKGFY--LLNISQLRLPGFCNSDALIGIFD 308
P+ G + L N+ L + IG+FD
Sbjct: 77 PA---GIFKELKNLETLWVTDNKLQALPIGVFD 106
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP 38
L E R+DRN L P DS +L +LS N + LP
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 106 LTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV-LNGSSLISVI-AGNNKLQSLIV 162
L +L V N++++L DL L LE + S NQL+ L L SS + +I NN L+ L
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL-- 168
Query: 163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222
P L+ + N+LE LP+ + P L I+A +N + +LP L ++
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLS-----LESIVA 222
Query: 223 SFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N L LP L + + L ++ +N + LP L L+ LN+ N L LP L +
Sbjct: 223 GNNILEELPEL-QNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPELPQ 277
Query: 283 GFYLLNISQ 291
L++S+
Sbjct: 278 SLTFLDVSE 286
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L SLP+ P LE++ AS N +T+LP + L L + L+ LP L
Sbjct: 83 LSSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPL----- 132
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG--FYLLNISQL-RLP 295
L+YL + +N + LP+L QNSS LK++++ N LK LP L F +QL LP
Sbjct: 133 -LEYLGVSNNQLEKLPEL--QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189
Query: 296 GFCNSDALIGIFDSGDNGDI 315
N L I+ DN +
Sbjct: 190 ELQNLPFLTAIY--ADNNSL 207
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 6 VDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXXXXXXX 65
VD N L + P D P L+F++A N++ LP P L + +
Sbjct: 160 VDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPF--LTAIYADNNSL------- 207
Query: 66 XXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGAL 124
++ P++ L S+ +N L+ L N LTT+ N +++L DL
Sbjct: 208 ---------KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP- 257
Query: 125 NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD 184
LE++ N L L SL + N L S P L +L+ S NE+ SL
Sbjct: 258 -SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIRSL-- 312
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
D P LE + S+N++ +LP+ +L L SFN L +P L + +LK L
Sbjct: 313 -CDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAEVPELPQ---NLKQLH 363
Query: 245 LQSNSINILPQL 256
++ N + P +
Sbjct: 364 VEYNPLREFPDI 375
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 78 PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLG--------ALNRLES 129
P K EL +NL SN L T+ L + L TLD++ N ++ L +G A N +
Sbjct: 56 PFTKLEL--LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESL--PDW 185
+ CSR Q K ++ NNK+ L + +R+Q+LD+ NE++++ +
Sbjct: 114 VSCSRGQGKK---------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
+ LE + +N I + Q KL TL LS N+L + + A + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKN 272
++N + +L + L+ S L+ ++ N
Sbjct: 222 RNNKL-VLIEKALRFSQNLEHFDLRGN 247
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 78 PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLG--------ALNRLES 129
P K EL +NL SN L T+ L + L TLD++ N ++ L +G A N +
Sbjct: 56 PFTKLEL--LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESL--PDW 185
+ CSR Q K ++ NNK+ L + +R+Q+LD+ NE++++ +
Sbjct: 114 VSCSRGQGKK---------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
+ LE + +N I + Q KL TL LS N+L + + A + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 246 QSNSINILPQL--FLQN 260
++N + ++ + F QN
Sbjct: 222 RNNKLVLIEKALRFSQN 238
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 151 IAGNNKLQSLIVSPRPAR----LQH-LDISYNELESLPDWIDTCPELETIFASHNRITQL 205
I ++ +++ +V P+ ++ L H LD+S ++ ++ I L ++ + N +T+L
Sbjct: 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL 262
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
P++ + L L L LS NRLTSLP+ + LKY + N + LP F N L+
Sbjct: 263 PAEI--KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF-GNLCNLQ 319
Query: 266 VLNISKNCLK 275
L + N L+
Sbjct: 320 FLGVEGNPLE 329
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 34/170 (20%)
Query: 89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIK---CSRNQLKTL---VL 142
L N+L L NLT L ++ N ++SL G ++L ++K NQL++L V
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 143 NG-SSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ ++L + +N+LQSL V + L LD+SYN+L+SLP E +F
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP---------EGVF--- 177
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
+++TQ L L+L N+L S+P + ++ SL+Y++L N
Sbjct: 178 DKLTQ------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 84 LTSVNLRSNQL----KGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSR---NQ 136
LT +NL NQL KG + NLT LD+S N ++SL G ++L +K R NQ
Sbjct: 135 LTYLNLAHNQLQSLPKG--VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 137 LKTL 140
LK++
Sbjct: 193 LKSV 196
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 220 LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
L L N+L + +L +++ +L YL L N + LP + LK L + +N L+ LP
Sbjct: 68 LALGGNKLHDISAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 280 LQKGFY--LLNISQLRLPGFCNSDALIGIFDSGDN---GDIASTLVQSIPRILLEERT 332
G + L N++ L L G+FD N D++ +QS+P + ++ T
Sbjct: 127 ---GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
+ L +V+ +NK ++ P + L + N+ +P + L I S+NRI+
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
L +Q F + +L TL LS+NRL +P + SL+ L L N I+++P+ + S
Sbjct: 69 LSNQSF-SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 264 LKVLNISKN 272
L L I N
Sbjct: 128 LSHLAIGAN 136
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 51/194 (26%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLT---TLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+LT +NL NQL+ T+ G + +LT TL ++ N + SL LG + L QL
Sbjct: 60 KLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-------TQLDK 111
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L L G+ L S+ +G V R +L+ L ++ N+L+S+P +
Sbjct: 112 LYLGGNQLKSLPSG--------VFDRLTKLKELRLNTNQLQSIP------------AGAF 151
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINI------ 252
+++T L TL LS N+L S+P ++ L+ + L N +
Sbjct: 152 DKLT------------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Query: 253 -LPQLFLQNSSKLK 265
L Q +NS+K+K
Sbjct: 200 YLSQWIRENSNKVK 213
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW-IDTC 189
C+ N+ K V G SL SV +G PA + LD+ L +L D
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSG-----------IPADTEKLDLQSTGLATLSDATFRGL 58
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
+L + +N++ L + F +L +L TL L+ N+L SLP + + L L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ LP +KLK L ++ N L+ +P+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 51/194 (26%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLT---TLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+LT +NL NQL+ T+ G + +LT TL ++ N + SL LG + L QL
Sbjct: 60 KLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-------TQLDK 111
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L L G+ L S+ +G V R +L+ L ++ N+L+S+P +
Sbjct: 112 LYLGGNQLKSLPSG--------VFDRLTKLKELRLNTNQLQSIP------------AGAF 151
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINI------ 252
+++T L TL LS N+L S+P ++ L+ + L N +
Sbjct: 152 DKLT------------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Query: 253 -LPQLFLQNSSKLK 265
L Q +NS+K+K
Sbjct: 200 YLSQWIRENSNKVK 213
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW-IDTC 189
C+ N+ K V G SL SV +G PA + LD+ L +L D
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSG-----------IPADTEKLDLQSTGLATLSDATFRGL 58
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
+L + +N++ L + F +L +L TL L+ N+L SLP + + L L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ LP +KLK L ++ N L+ +P+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLI 148
L N+L L NLT L ++ N ++SL G ++L + LK LVL + L
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN-------LKELVLVENQLQ 122
Query: 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
S+ G V + L +L + +N+L+SLP + D L + +N++ LP
Sbjct: 123 SLPDG--------VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 208 QFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
F +L +L L L+ N+L S+P + ++ SL +++L +N
Sbjct: 175 GVF-DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 84 LTSVNLRSNQL----KGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
LT + L NQL KG + NLT LD+ N ++SL G ++L QLK
Sbjct: 135 LTYLYLYHNQLQSLPKG--VFDKLTNLTRLDLDNNQLQSLPEGVFDKL-------TQLKQ 185
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHL-------DISYNELESLPDWIDTCPEL 192
L LN + L SV G V R L H+ D + +++ L WI P L
Sbjct: 186 LSLNDNQLKSVPDG--------VFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 237
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
L + L L N+L + S ++++ +L YL L N + LP + LK L + +N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 274 LKMLPSLQKGFY--LLNISQLRLPGFCNSDALIGIFDSGDN---GDIASTLVQSIPRILL 328
L+ LP G + L N++ L L G+FD N D+ + +QS+P +
Sbjct: 121 LQSLPD---GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 329 EERT 332
++ T
Sbjct: 178 DKLT 181
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264
P+ F R LG LHTL L L L P L R +A+L+YL+LQ N++ LP ++ L
Sbjct: 97 PTTF--RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 265 KVLNISKNCLKMLP 278
L + N + +P
Sbjct: 155 THLFLHGNRIPSVP 168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 29/198 (14%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLT---TLDVSENS----IESLDLGALNRLESIKCSRNQ 136
LT + L SN L G I + LT LD+S+N+ ++ L L ++ R
Sbjct: 57 LTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 137 LKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETI 195
L+ L G L +A LQ+L + N L++LPD L +
Sbjct: 116 LQEL---GPGLFRGLAA---------------LQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILP 254
F NRI +P F R L L L L N + + P R + L L+L +N++++LP
Sbjct: 158 FLHGNRIPSVPEHAF-RGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 255 QLFLQNSSKLKVLNISKN 272
L L+ L ++ N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 LGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
LG+LHTL L L L P L R +A+L+YL+LQ N++ LP ++ L L + N
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 273 CLKMLP 278
+ +P
Sbjct: 163 RISSVP 168
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 106 LTTLDVSENS-IESLD------LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKL 157
L LD+S+N+ + S+D LG L+ L +C +L + G ++L + +N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 158 QSLI--VSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCREL 214
Q+L L HL + N + S+P+ L+ + NR+ + F R+L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDL 199
Query: 215 GKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN 248
G+L TL L N L++LP+ + + +L+YL L N
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 LGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
LG+LHTL L L L P L R +A+L+YL+LQ N++ LP ++ L L + N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 273 CLKMLP 278
+ +P
Sbjct: 164 RISSVP 169
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 106 LTTLDVSENS-IESLD------LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKL 157
L LD+S+N+ + S+D LG L+ L +C +L + G ++L + +N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 158 QSLI--VSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCREL 214
Q+L L HL + N + S+P+ L+ + NR+ + F R+L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDL 200
Query: 215 GKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN 248
G+L TL L N L++LP+ + + +L+YL L N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 41/153 (26%)
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDT 188
++ ++N L +L +SL + A +N+L +L P PA L+HLD+ N+L LP+
Sbjct: 85 LEITQNALISLPELPASLEYLDACDNRLSTL---PELPASLKHLDVDNNQLTXLPE---- 137
Query: 189 CPE-LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
P LE I A +N++T LP LP+ SL+ L +++
Sbjct: 138 LPALLEYINADNNQLTXLP----------------------ELPT------SLEVLSVRN 169
Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
N + LP+L L+ L++S N L+ LP++
Sbjct: 170 NQLTFLPEL----PESLEALDVSTNLLESLPAV 198
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQ 136
V ELT + L+ N L T L NY L +D+S N +E + + RLE + S N+
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 137 LKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIF 196
L L L G P P L+ LD+S+N L + LE ++
Sbjct: 284 LVALNLYG------------------QPIPT-LKVLDLSHNHLLHVERNQPQFDRLENLY 324
Query: 197 ASHNRITQLPSQFFCRELGKLHTLQ---LSFNRL--TSLPSLIRQIA 238
HN I L +L HTL+ LS N SL +L R +A
Sbjct: 325 LDHNSIVTL-------KLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 109 LDVSENSIESLDLGALN-RLESIKCSRNQLK--TLVLNGSSLISVIAGNNKLQSLIVSP- 164
LD S NSI + G +N L +K N L +LN L+ V N+L+ ++ P
Sbjct: 210 LDASHNSINVVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 165 -RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
+ RL+ L IS N L +L + P L+ + SHN + + + +L L L
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLD 326
Query: 224 FNRLTSL 230
N + +L
Sbjct: 327 HNSIVTL 333
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 151 IAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQF 209
I N+K + + + P+ L++ N+L+SLP + D +L + S N+I LP
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71
Query: 210 FCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILP 254
F +L KL L L N+L SLP+ + ++ LK L L +N + +P
Sbjct: 72 F-DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFL 258
N++ LP F +L +L L LS N++ SLP + ++ L L+L N + LP
Sbjct: 38 NKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96
Query: 259 QNSSKLKVLNISKNCLKMLP 278
++LK L + N LK +P
Sbjct: 97 DKLTQLKELALDTNQLKSVP 116
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 220 LQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L+L N+L SLP + ++ L L L N I LP +KL +L + +N L+ LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQ 136
V ELT + L+ N L T L NY L +D+S N +E + + RLE + S N+
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 137 LKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIF 196
L L L G P P L+ LD+S+N L + LE ++
Sbjct: 290 LVALNLYG------------------QPIPT-LKVLDLSHNHLLHVERNQPQFDRLENLY 330
Query: 197 ASHNRITQLPSQFFCRELGKLHTLQ---LSFNRL--TSLPSLIRQIA 238
HN I L +L HTL+ LS N SL +L R +A
Sbjct: 331 LDHNSIVTL-------KLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 109 LDVSENSIESLDLGALN-RLESIKCSRNQLK--TLVLNGSSLISVIAGNNKLQSLIVSP- 164
LD S NSI + G +N L +K N L +LN L+ V N+L+ ++ P
Sbjct: 216 LDASHNSINVVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 165 -RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
+ RL+ L IS N L +L + P L+ + SHN + + + +L L L
Sbjct: 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLD 332
Query: 224 FNRLTSL 230
N + +L
Sbjct: 333 HNSIVTL 339
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 48/236 (20%)
Query: 84 LTSVNLRSNQLKGTIILGNY---GNLTTLDVSENSIESL------DLGALNRLE------ 128
L ++ LRSN+LK I LG + NLT LD+SEN I L DL L LE
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 129 -----SIKCSRNQLKTLVLNGSSLISV-IAGNNKLQSLIVSPRPARLQHLDI------SY 176
N L+ L L +L S+ + L LIV RL+HL+I S+
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV----LRLRHLNINAIRDYSF 196
Query: 177 NELESLP-------DWIDTCP-------ELETIFASHNRITQLPSQFFCRELGKLHTLQL 222
L L ++DT L ++ +H +T +P R L L L L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNL 255
Query: 223 SFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
S+N ++++ S++ ++ L+ + L + ++ + + L+VLN+S N L L
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 169 LQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227
L+ L + N+L +LP + D+ +L + N++T LPS F R L L L + N+L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR-LVHLKELFMCCNKL 124
Query: 228 TSLPSLIRQIASLKYLFLQSNSINILPQ 255
T LP I ++ L +L L N + +P
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPH 152
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 220 LQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L N++T L P + + +LK L+L SN + LP + ++L VL++ N L +LP
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 279 S 279
S
Sbjct: 105 S 105
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIK---CSRNQLKTL- 140
T+V+ RS + ++ G N L + +N I L+ G + L ++K NQL L
Sbjct: 22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 141 --VLNGSSLISVIA-GNNKLQSL--IVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
V + + ++V+ G N+L L V R L+ L + N+L LP I+ L +
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL 140
Query: 196 FASHNRITQLPSQFFCR 212
N++ +P F R
Sbjct: 141 ALDQNQLKSIPHGAFDR 157
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 25/202 (12%)
Query: 92 NQLKGTIILGNYGNLTTLDVSENSIESL--DLGAL-NRLESIKCSRNQLKTL--VLNGSS 146
N+++ G LT L + N IE + D A +++E + S N+LK + + N S
Sbjct: 583 NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642
Query: 147 LI---SVIAGNNKLQS-------LIVSPRPARLQHLDISYNELESLP-DWIDTCPELETI 195
+ SV NK+ S + + +SYNE++ P + T + TI
Sbjct: 643 VYVXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702
Query: 196 FASHNRITQLPSQFFCRELGK------LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
S+N T +P + G L T+ L FN+LTSL R +L YL S
Sbjct: 703 ILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-TTLPYLSNXDVS 761
Query: 250 INILPQLFLQ--NSSKLKVLNI 269
N Q NSS+LK I
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGI 783
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 155 NKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRE 213
NK++ L +L L + YN++E +P D+ ++E + SHN++ +P+ F +
Sbjct: 583 NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642
Query: 214 LGKLHTLQLSFNRLTSLPSLIR------QIASLKYLFLQSNSINILPQLFLQNSSKLKVL 267
+ ++ S+N++ S I + + + L N I P S + +
Sbjct: 643 VYVXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702
Query: 268 NISKNCLKMLP--SLQ------KGFYLLNISQLRL 294
+S N +P SL+ K YLL LR
Sbjct: 703 ILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 109 LDVSENSIESL---DLGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSLI 161
L +S+NSI L D+ L+ L ++ S N++++L L L + +N+LQ++
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 162 VSPRPARLQHLDISYNELESLP 183
P A L+HLD+S+N+ + LP
Sbjct: 117 CCPM-ASLRHLDLSFNDFDVLP 137
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 166 PARLQHLDISYNELESL--PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
P R + L +S N + L PD I EL + SHNRI L F L L +S
Sbjct: 51 PPRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVS 108
Query: 224 FNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF-LQNSSKLKVLNIS 270
NRL ++ +ASL++L L N ++LP N +KL L +S
Sbjct: 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 92 NQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVI 151
N K ++ N +L TLDVS NS+ S A +R C+ + LVLN SS
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNS---HAYDR----TCAWAE-SILVLNLSS----- 437
Query: 152 AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFC 211
N L + P +++ LD+ N + S+P + L+ + + N++ +P F
Sbjct: 438 ---NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFD 494
Query: 212 R 212
R
Sbjct: 495 R 495
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 122 GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES 181
L RL+++ RN LK N + +++ + L+ LD+S N L S
Sbjct: 374 STLKRLQTLILQRNGLK----------------NFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 182 LPDWIDTCPELETIFA---SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ TC E+I S N +T S F C K+ L L NR+ S+P + +
Sbjct: 418 -HAYDRTCAWAESILVLNLSSNMLTG--SVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 239 SLKYLFLQSNSINILP 254
+L+ L + SN + +P
Sbjct: 474 ALQELNVASNQLKSVP 489
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 27/166 (16%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
L+ +LRS Q G I+L NLT+LD+S N+ + C + K LN
Sbjct: 368 LSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFHPM---------PDSCQWPE-KMRFLN 416
Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
SS G +++ I P L+ LD+S N L+S ++ P L+ ++ S N++
Sbjct: 417 LSS-----TGIRVVKTCI----PQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLK 464
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
LP L +++S N+L S+P + ++ SL+ ++L +N
Sbjct: 465 TLPDASL---FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 168 RLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
+L L+++YN++ +P ++ ++E + +HN++ +P+ F + + + S+N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNE 413
Query: 227 LTSL---------PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
+ S+ P+ + I ++ + L +N I+ P+ S L +N+ N L +
Sbjct: 414 IGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEI 472
Query: 278 P--SLQ------KGFYLLNISQLRL 294
P SL+ K YLL LR
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRF 497
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 27/166 (16%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
L+ +LRS Q G I+L NLT+LD+S N+ + C + K LN
Sbjct: 394 LSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFHPM---------PDSCQWPE-KMRFLN 442
Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
SS G +++ I P L+ LD+S N L+S ++ P L+ ++ S N++
Sbjct: 443 LSS-----TGIRVVKTCI----PQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLK 490
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
LP L ++++ N+L S+P + ++ SL+ ++L +N
Sbjct: 491 TLPDASL---FPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 96/231 (41%), Gaps = 39/231 (16%)
Query: 84 LTSVNLRSNQLKGTIILGNY--GNLTTLDVSENSIESLDLGALNRLE-----SIKCSRNQ 136
L S++L SN + + N+ NL LD N+I + N LE S+ + N
Sbjct: 130 LESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGND 189
Query: 137 LK-------------TLVLNGS-SLISVIAG--NNKLQSLIVSPRPARLQHLDISYNELE 180
+K +L GS +L + G N+ LQSL + + D Y
Sbjct: 190 IKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWL----GTFEDTDDQYLTSA 245
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
+ D +E+I +R + L S F R ++ L L+ L LPS I + SL
Sbjct: 246 TFEGLCDM--SVESINLQKHRFSDLSSSTF-RCFTRVQELDLTAAHLNGLPSGIEGMNSL 302
Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKN---------CLKMLPSLQK 282
K L L +NS + L Q+ + L+ L I N CL+ L +LQK
Sbjct: 303 KKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 53/226 (23%)
Query: 76 REPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRN 135
R+ +KG + ++L GT L NL LD+S + IE+ D C
Sbjct: 327 RDLYIKGNMRKLDL------GTRCLEKLENLQKLDLSHSDIEASD-----------CCNL 369
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW-IDTCPELET 194
QLK L LQ+L++SYNE L D CP+LE
Sbjct: 370 QLKNL--------------------------RHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 195 IFASHNRI-TQLPSQFFCRELGKLHTLQLSFNRL-TSLPSLIRQIASLKYLFLQSNSI-- 250
+ + + + P F + L L L LS L TS L+ + L++L LQ NS
Sbjct: 404 LDVAFTHLHVKAPHSPF-QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 251 -NILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
+I LQ L++L +S +L Q+ F+ L N++ L L
Sbjct: 463 GSISKTNLLQMVGSLEILILSS--CNLLSIDQQAFHGLRNVNHLDL 506
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 52/236 (22%)
Query: 84 LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIE-----SLDLGALNRLESIKCSRN 135
LT + +R N K G L GNL TLD+S N IE SL L L+ L+++ S N
Sbjct: 324 LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 136 --------------QLKTLVLNGSSLISVIAGNNKLQSL-------------------IV 162
QL+ L L + L + A + Q+L ++
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLL 442
Query: 163 SPRPARLQHLDISYNELE----SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLH 218
+ P L+HL++ N + + + + T LE + S + + Q F LGK+
Sbjct: 443 AGLPV-LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAF-HSLGKMS 500
Query: 219 TLQLSFNRLTSLPSLIRQIASLK--YLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+ LS N LT I ++ LK YL L +NSINI+ L S+ +N+S N
Sbjct: 501 HVDLSHNSLTC--DSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 217 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F S+
Sbjct: 277 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSN 335
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 336 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 371
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 135
Query: 139 TLVLNGSSLISVIAGNNKLQSL-----IVSPRP----ARLQHLDISYNELESLPDWIDTC 189
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 136 -LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKL 193
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 194 TNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQ 249
Query: 250 I-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 250 ISNLAPLSGLTKLTELKL 267
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 191 ELETIFASHNRITQLPSQ-------FFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKY 242
+LE + HN + +L +F + L LH L L N +P + + + LK
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 574
Query: 243 LFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
+ L N++N LP N LK LN+ KN ++ S++K +
Sbjct: 575 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN---LITSVEKKVF 614
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F S+
Sbjct: 278 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSN 336
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 337 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 372
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 135
Query: 139 TLVLNGSSLISVIAGNNKLQSL------IVSPRP----ARLQHLDISYNELESLPDWIDT 188
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 136 -LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAK 193
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 194 LTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANN 249
Query: 249 SI-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 250 QISNLAPLSGLTKLTELKL 268
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 191 ELETIFASHNRITQLPSQ-------FFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKY 242
+LE + HN + +L +F + L LH L L N +P + + + LK
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 243 LFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
+ L N++N LP N LK LN+ KN ++ S++K +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN---LITSVEKKVF 604
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 191 ELETIFASHNRITQLPSQ-------FFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKY 242
+LE + HN + +L +F + L LH L L N +P + + + LK
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 569
Query: 243 LFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
+ L N++N LP N LK LN+ KN ++ S++K +
Sbjct: 570 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN---LITSVEKKVF 609
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 221 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 280
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F ++
Sbjct: 281 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFAN 339
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 340 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 375
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 90 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 139
Query: 139 TLVLNGSSLISVIAGNNKLQSL-----IVSPRP----ARLQHLDISYNELESLPDWIDTC 189
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 140 -LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKL 197
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 198 TNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQ 253
Query: 250 I-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 254 ISNLAPLSGLTKLTELKL 271
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 106 LTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVI-AGNNKLQSLIVSP 164
LTTLD S N I LD+ L + C N + L LN + ++ + +NKL + V+P
Sbjct: 172 LTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTP 231
Query: 165 RPARLQHLDISYNELESL 182
+L + D S N L L
Sbjct: 232 L-TQLTYFDCSVNPLTEL 248
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 30/204 (14%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
LT + SN + T+ L NLT L N + +LD+ L +L + C N+L L ++
Sbjct: 66 LTKLICTSNNIT-TLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 144 GSSLISVI-AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCP--ELETIFASHN 200
+ L++ + N L + VS +L LD N+ + +D P +L T+ S N
Sbjct: 125 QNPLLTYLNCARNTLTEIDVS-HNTQLTELDCHLNKKIT---KLDVTPQTQLTTLDCSFN 180
Query: 201 RITQLP-------SQFFC--RELGKL---HTLQLSF-----NRLTSLPSLIRQIASLKYL 243
+IT+L ++ C + KL +QL+F N+LT + + + L Y
Sbjct: 181 KITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238
Query: 244 FLQSNSINILPQLFLQNSSKLKVL 267
S+N L +L + SKL L
Sbjct: 239 ---DCSVNPLTELDVSTLSKLTTL 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F +
Sbjct: 282 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 340
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 341 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 376
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 91 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 140
Query: 139 TLVLNGSSLISVIAGNNKLQSL-----IVSPRP----ARLQHLDISYNELESLPDWIDTC 189
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 141 -LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKL 198
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 199 TNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQ 254
Query: 250 I-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 255 ISNLAPLSGLTKLTELKL 272
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 217 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F +
Sbjct: 277 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 335
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 336 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 371
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 135
Query: 139 TLVLNGSSLISVIAGNNKLQSL-----IVSPRP----ARLQHLDISYNELESLPDWIDTC 189
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 136 -LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKL 193
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 194 TNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQ 249
Query: 250 I-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 250 ISNLAPLSGLTKLTELKL 267
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256
SHN +++L +++ L LH+L LS N L + S + +L+YL L SN ++ L +
Sbjct: 47 SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106
Query: 257 FLQNSSKLKVLNISKN 272
+ L+VL + N
Sbjct: 107 LFSDLQALEVLLLYNN 122
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F +
Sbjct: 278 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 336
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 337 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 372
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 135
Query: 139 TLVLNGSSLISVIAGNNKLQSL------IVSPRP----ARLQHLDISYNELESLPDWIDT 188
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 136 -LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAK 193
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 194 LTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANN 249
Query: 249 SI-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 250 QISNLAPLSGLTKLTELKL 268
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
Query: 142 -LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
L G ++L ++ N+L+ + L +L + +N + + + + +L+ +F +
Sbjct: 278 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 336
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
N+++ + S + L + LT L +L R
Sbjct: 337 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 372
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLK 138
+L + + +NQ+ L N NLT L + N I +D L LNRLE
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---------- 135
Query: 139 TLVLNGSSLISVIAGNNKLQSL------IVSPRP----ARLQHLDISYNELESLPDWIDT 188
L N S IS ++G LQ L + +P L+ LDIS N++ + +
Sbjct: 136 -LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAK 193
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
LE++ A++N+I+ + L L L L+ N+L + +L + +L L L +N
Sbjct: 194 LTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANN 249
Query: 249 SI-NILPQLFLQNSSKLKV 266
I N+ P L ++LK+
Sbjct: 250 QISNLAPLSGLTKLTELKL 268
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSI 250
LE + S N I + F L L+TL+L NRLT++P+ ++ LK L+L++N I
Sbjct: 90 LEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 251 NILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY--LLNISQLRLPGFCN 299
+P L+ L++ + LK L + +G + L N+ L L CN
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGE--LKRLSYISEGAFEGLSNLRYLNL-AMCN 196
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN 135
K L + L++N G I L N L +L +S N + LG+L++L +K N
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-LPDWIDTCPELET 194
L+ + Q L+ L+ L + +N+L +P + C L
Sbjct: 450 MLEGEIP---------------QELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-I 252
I S+NR+T ++ R L L L+LS N + ++P+ + SL +L L +N N
Sbjct: 492 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 253 LPQLFLQNSSKLKV 266
+P + S K+
Sbjct: 551 IPAAMFKQSGKIAA 564
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 38/239 (15%)
Query: 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKT 139
GEL + + N++ G + + NL LDVS N+ + LG + L+ + S N+L
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRP----ARLQHLDISYNELES-LPDWI-DTCPELE 193
S + + N + V P P LQ+L ++ N+ +PD++ C L
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 194 TIFASHNRITQLPSQFFCR------------------------ELGKLHTLQLSFNRLTS 229
+ S N FF ++ L L LSFN +
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 230 -LP-SLIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCL--KMLPSLQK 282
LP SL ASL L L SN+ + ILP L + L+ L + N K+ P+L
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN 135
K L + L++N G I L N L +L +S N + LG+L++L +K N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-LPDWIDTCPELET 194
L+ + Q L+ L+ L + +N+L +P + C L
Sbjct: 453 MLEGEIP---------------QELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-I 252
I S+NR+T ++ R L L L+LS N + ++P+ + SL +L L +N N
Sbjct: 495 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 253 LPQLFLQNSSKLKV 266
+P + S K+
Sbjct: 554 IPAAMFKQSGKIAA 567
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 38/239 (15%)
Query: 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKT 139
GEL + + N++ G + + NL LDVS N+ + LG + L+ + S N+L
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRP----ARLQHLDISYNELES-LPDWI-DTCPELE 193
S + + N + V P P LQ+L ++ N+ +PD++ C L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 194 TIFASHNRITQLPSQFFCR------------------------ELGKLHTLQLSFNRLTS 229
+ S N FF ++ L L LSFN +
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 230 -LP-SLIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCL--KMLPSLQK 282
LP SL ASL L L SN+ + ILP L + L+ L + N K+ P+L
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTT-------LDVSENSIESLDLGALNRLESIKCSRN 135
EL ++ L+ NQLK L +TT LD+S+NS+ + CS
Sbjct: 349 ELETLILQMNQLKE---LSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-------DCSWT 398
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
+ SL+S+ +N L I P R++ LD+ N+++S+P + L+ +
Sbjct: 399 K---------SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 196 FASHNRITQLPSQFFCR 212
+ N++ +P F R
Sbjct: 450 NVASNQLKSVPDGIFDR 466
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 18/89 (20%)
Query: 107 TTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--- 160
T L++S+N I L D+ +L++L + S N+++ L ISV N +L+ L
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD------ISVFKFNQELEYLDLS 77
Query: 161 -----IVSPRP-ARLQHLDISYNELESLP 183
+S P L+HLD+S+N ++LP
Sbjct: 78 HNKLVKISCHPTVNLKHLDLSFNAFDALP 106
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 45/195 (23%)
Query: 84 LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
LT ++++ N + GT L N NL LD+S + IE+ D C QL+ L
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-----------CCNLQLRNL 375
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASH 199
+ LQ L++SYNE SL + CP+LE + +
Sbjct: 376 --------------------------SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRL-TSLPSLIRQIASLKYLFLQSNSI---NILPQ 255
R+ +Q + L L L LS + L S L + +L++L LQ N NI
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 256 LFLQNSSKLKVLNIS 270
LQ +L++L +S
Sbjct: 470 NSLQTLGRLEILVLS 484
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQI 237
LE +P D P+ + +N+IT++ F + L LHTL L N+++ + P +
Sbjct: 43 LEKVPK--DLPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPL 99
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKV 266
L+ L+L N + LP+ + +L+V
Sbjct: 100 VKLERLYLSKNQLKELPEKMPKTLQELRV 128
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQI 237
LE +P D P+ + +N+IT++ F + L LHTL L N+++ + P +
Sbjct: 43 LEKVPK--DLPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPL 99
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKV 266
L+ L+L N + LP+ + +L+V
Sbjct: 100 VKLERLYLSKNQLKELPEKMPKTLQELRV 128
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 93 QLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLK--TLVLNGSSLIS 149
++K + N +L +L ++ N IE + L +L L NQ+ T V N + L S
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNS 225
Query: 150 VIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQF 209
+ GNNK+ L ++L L+I N++ + + + +L+ + N+I+ +
Sbjct: 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLNVGSNQISDIS--- 281
Query: 210 FCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSI 250
L +L++L L+ N+L + +I + +L LFL N I
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 84 LTSVNLRSNQLKGTIILGNY---GNLTTLDVSENSIESLDLG----ALNRLESIKCSRNQ 136
L ++NL N + I G + G L LD+ N IE G L + I S N+
Sbjct: 383 LLTLNLTKNHI-SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNK 441
Query: 137 LKTLVLNGSSLI----SVIAGNNKLQSLIVSPRPAR----LQHLDISYNELESL-PDWID 187
L + +L+ ++ L+++ +SP P R L LD+S N + ++ D ++
Sbjct: 442 YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 188 TCPELETIFASHNRITQLPSQF-------FCRELGKLHTLQLSFNRLTSLP-SLIRQIAS 239
LE + HN + +L + F + L LH L L N L +P + + +
Sbjct: 502 GLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFE 561
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
LK + L N++N L + + L+ LN+ KN ++ S++K +
Sbjct: 562 LKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN---LITSVEKDVF 604
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 102 NYGNLTTLDVSENSIESLDL----GALNRLESIKCSRNQLKTLV------LNGSSLISVI 151
N LT LD+S+N I SL L G LN L+SI S NQ+ + L G +L
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 152 AGNNKLQSLI-------VSP-RPARLQHLDISYNELE-----SLPDWIDTCPELETI--- 195
N L S + ++P R L+ LD+S N + + I I
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 196 ------FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN 248
F HN + F + L LS + SL S + + LK L L N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
IN + L+VLN+S N L L S
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYS 331
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 209 FFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLN 268
++CR L K LS +LT LP+ A ++ + L + I Q FL+ +S+LK +
Sbjct: 180 YYCRNLKKAD---LSRTKLTKLPASTFVYAGVEEVLLPATLKEIGAQAFLK-TSQLKTIE 235
Query: 269 ISKNC 273
I +N
Sbjct: 236 IPENV 240
>pdb|2IAH|A Chain A, Crystal Structure Of The Ferripyoverdine Receptor Of The
Outer Membrane Of Pseudomonas Aeruginosa Bound To
Ferripyoverdine.
pdb|2O5P|A Chain A, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2O5P|B Chain B, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2W16|A Chain A, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W16|B Chain B, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W6T|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6T|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6U|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W6U|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W75|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W75|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W76|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W76|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W77|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W77|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W78|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
pdb|2W78|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
Length = 772
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 72 IVERREPEVKGELTSVNLRSNQLKGTIILGNY-GNLTTLDVSENSIESLDLGALNRLESI 130
+ +R +KG+L + L+GT ++ GN T+ V+E + S+DLGA
Sbjct: 34 VRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGA------T 87
Query: 131 KCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR 165
+ NQL T+ + GS IA + L+++PR
Sbjct: 88 MITSNQLGTITEDSGSYTPGTIATATR---LVLTPR 120
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQ 259
R+T +P+ ++ L L+L N + +PS L + +L+ + SN + +P+
Sbjct: 134 RLTHIPANLL-TDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFG 191
Query: 260 NSSKLKVLNISKNCLKMLP 278
KLK LN++ N LK +P
Sbjct: 192 KMPKLKQLNLASNQLKSVP 210
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 24/126 (19%)
Query: 372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCP---LSFPDPHVTEV 428
P R I + G ++ R GSL + A G P L P+P V E+
Sbjct: 173 PCNPREKERIQNAG-GSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEI 231
Query: 429 MLHENDHFLILA---------NKSVSEPVLAAKRIQDLAQSY-----------GSEDNLS 468
+ E D F+ILA N+ + E V + + D ++ GS DN+S
Sbjct: 232 LRAEEDEFIILAXDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMS 291
Query: 469 VLVLRF 474
++++ F
Sbjct: 292 IVLVCF 297
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 107/266 (40%), Gaps = 48/266 (18%)
Query: 71 IIVERRE-PEVKGEL----TSVNLRSN--QLKGTIILGNYGNLTTLDVSENSIESLDLGA 123
+I RRE EV + +NL+ N Q+ T + +L L +S+N + +++GA
Sbjct: 19 VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
N L S L TL L + L +V + S +L+ L + N +ES+P
Sbjct: 79 FNGLPS-------LNTLELFDNRLTTVPTQAFEYLS--------KLRELWLRNNPIESIP 123
Query: 184 DW-IDTCPELETI-FASHNRITQLPSQFF-------------CR--------ELGKLHTL 220
+ + P L + R+ + F C L +L L
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEEL 183
Query: 221 QLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP- 278
+LS NRL + P + + SL+ L+L + + + + L+ LN+S N L LP
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPH 243
Query: 279 SLQKGFYLLNISQLRL-PGFCNSDAL 303
L + L L P CN D L
Sbjct: 244 DLFTPLHRLERVHLNHNPWHCNCDVL 269
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWID--TCPELETIFAS 198
+G +L +V AG S +P PA ++H +YN++ S ID TC +
Sbjct: 137 AFHGRTLFTVSAGGQPAYSQDFAPLPADIRH--AAYNDINSASALIDDSTCAVIVEPIQG 194
Query: 199 HNRITQLPSQFF--CRELGKLHTLQLSFNRLTS 229
+ + F REL H L F+ + +
Sbjct: 195 EGGVVPASNAFLQGLRELCNRHNALLIFDEVQT 227
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 107/266 (40%), Gaps = 48/266 (18%)
Query: 71 IIVERRE-PEVKGEL----TSVNLRSN--QLKGTIILGNYGNLTTLDVSENSIESLDLGA 123
+I RRE EV + +NL+ N Q+ T + +L L +S+N + +++GA
Sbjct: 19 VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
N L S L TL L + L +V + S +L+ L + N +ES+P
Sbjct: 79 FNGLPS-------LNTLELFDNRLTTVPTQAFEYLS--------KLRELWLRNNPIESIP 123
Query: 184 DW-IDTCPELETI-FASHNRITQLPSQFF-------------CR--------ELGKLHTL 220
+ + P L + R+ + F C L +L L
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEEL 183
Query: 221 QLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP- 278
+LS NRL + P + + SL+ L+L + + + + L+ LN+S N L LP
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPH 243
Query: 279 SLQKGFYLLNISQLRL-PGFCNSDAL 303
L + L L P CN D L
Sbjct: 244 DLFTPLHRLERVHLNHNPWHCNCDVL 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,530,258
Number of Sequences: 62578
Number of extensions: 527272
Number of successful extensions: 1716
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 318
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)