Query psy12423
Match_columns 567
No_of_seqs 797 out of 4630
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 18:56:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0618|consensus 100.0 4.2E-48 9E-53 409.4 14.4 531 1-545 47-893 (1081)
2 KOG4194|consensus 100.0 2.5E-31 5.4E-36 269.2 1.7 420 1-445 151-598 (873)
3 PLN03145 Protein phosphatase 2 100.0 2E-27 4.4E-32 241.6 19.2 172 301-476 103-331 (365)
4 KOG4194|consensus 100.0 8.8E-29 1.9E-33 250.9 8.1 326 2-331 81-468 (873)
5 KOG0697|consensus 99.9 5.3E-26 1.2E-30 210.1 17.3 171 301-475 53-291 (379)
6 KOG0698|consensus 99.9 1.5E-25 3.3E-30 227.1 17.7 174 300-477 74-306 (330)
7 PTZ00224 protein phosphatase 2 99.9 9.7E-25 2.1E-29 222.7 19.2 166 302-475 49-271 (381)
8 PLN00113 leucine-rich repeat r 99.9 1.5E-24 3.2E-29 253.5 19.1 282 1-298 71-369 (968)
9 PF00481 PP2C: Protein phospha 99.9 1.3E-24 2.7E-29 214.1 11.7 163 301-467 33-254 (254)
10 COG0631 PTC1 Serine/threonine 99.9 1.3E-23 2.8E-28 206.1 18.7 166 302-477 39-254 (262)
11 PLN00113 leucine-rich repeat r 99.9 6.3E-24 1.4E-28 248.2 19.3 283 1-298 142-465 (968)
12 KOG0444|consensus 99.9 1.9E-26 4E-31 235.3 -3.7 262 1-278 105-378 (1255)
13 KOG0444|consensus 99.9 1.2E-26 2.6E-31 236.6 -5.6 281 2-296 35-373 (1255)
14 PRK15387 E3 ubiquitin-protein 99.9 3.8E-23 8.2E-28 226.9 16.5 257 2-300 204-460 (788)
15 KOG0472|consensus 99.9 1.3E-25 2.8E-30 219.1 -4.2 282 1-300 185-543 (565)
16 PRK15387 E3 ubiquitin-protein 99.9 6.9E-22 1.5E-26 217.0 16.4 235 1-275 224-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.9 7.4E-22 1.6E-26 218.1 14.5 244 2-275 181-428 (754)
18 PRK14559 putative protein seri 99.9 1.1E-20 2.4E-25 203.4 19.9 167 301-475 414-635 (645)
19 KOG0472|consensus 99.9 4E-24 8.6E-29 208.7 -8.7 261 1-279 47-314 (565)
20 PRK15370 E3 ubiquitin-protein 99.8 5.6E-21 1.2E-25 211.2 14.6 223 1-251 201-428 (754)
21 KOG0700|consensus 99.8 7.3E-21 1.6E-25 187.7 12.5 141 301-445 99-341 (390)
22 smart00332 PP2Cc Serine/threon 99.8 5.2E-19 1.1E-23 174.4 18.2 169 300-472 33-255 (255)
23 cd00143 PP2Cc Serine/threonine 99.8 2.5E-18 5.5E-23 169.3 19.4 170 301-474 30-254 (254)
24 KOG0618|consensus 99.8 2.8E-21 6.2E-26 206.4 -3.5 254 1-272 243-510 (1081)
25 KOG0699|consensus 99.8 6E-19 1.3E-23 169.1 10.3 127 361-491 330-523 (542)
26 PLN03210 Resistant to P. syrin 99.8 1.4E-17 3E-22 196.0 22.6 270 1-293 591-901 (1153)
27 KOG4237|consensus 99.8 1.5E-20 3.3E-25 183.7 -4.4 290 2-311 70-375 (498)
28 KOG1323|consensus 99.7 3.5E-17 7.6E-22 155.5 16.6 133 338-475 221-487 (493)
29 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.7E-21 186.9 20.9 251 1-273 613-904 (1153)
30 KOG0617|consensus 99.6 5.6E-18 1.2E-22 148.0 -4.3 164 100-285 29-196 (264)
31 KOG4237|consensus 99.6 1.8E-17 3.9E-22 162.3 -2.4 290 5-332 52-376 (498)
32 cd00116 LRR_RI Leucine-rich re 99.6 7.2E-16 1.6E-20 157.1 5.4 239 3-275 2-291 (319)
33 KOG0617|consensus 99.5 1.4E-16 3.1E-21 139.2 -4.4 154 144-300 32-188 (264)
34 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-15 5.2E-20 153.3 3.1 244 1-274 25-319 (319)
35 KOG0532|consensus 99.3 6.4E-14 1.4E-18 143.4 -2.9 189 82-273 75-271 (722)
36 COG4886 Leucine-rich repeat (L 99.3 2.2E-12 4.9E-17 135.6 6.9 193 86-282 97-297 (394)
37 PF14580 LRR_9: Leucine-rich r 99.3 3.3E-12 7.1E-17 116.6 6.0 83 167-251 42-126 (175)
38 COG4886 Leucine-rich repeat (L 99.3 4.2E-12 9.1E-17 133.5 6.6 173 82-257 116-296 (394)
39 KOG1909|consensus 99.3 5.9E-13 1.3E-17 129.3 -0.7 191 79-275 89-311 (382)
40 KOG0532|consensus 99.2 5.1E-13 1.1E-17 136.9 -2.4 175 102-280 73-252 (722)
41 KOG1259|consensus 99.2 2.4E-12 5.2E-17 122.4 0.9 194 82-279 214-416 (490)
42 KOG3207|consensus 99.2 2E-12 4.4E-17 128.9 -0.5 174 102-279 119-318 (505)
43 KOG1379|consensus 99.2 7.6E-10 1.6E-14 106.4 16.1 153 313-474 123-330 (330)
44 KOG1259|consensus 99.2 6E-12 1.3E-16 119.7 1.0 221 78-303 178-417 (490)
45 PF14580 LRR_9: Leucine-rich r 99.1 4.9E-11 1.1E-15 108.9 6.0 121 154-278 6-129 (175)
46 KOG3207|consensus 99.1 9.4E-12 2E-16 124.2 1.3 198 79-276 118-340 (505)
47 KOG0531|consensus 99.1 9.2E-12 2E-16 131.5 -0.6 189 81-275 94-290 (414)
48 KOG1909|consensus 99.1 9.7E-12 2.1E-16 121.0 -0.5 190 100-297 88-310 (382)
49 KOG0531|consensus 99.0 4.9E-11 1.1E-15 126.0 0.6 235 2-277 75-320 (414)
50 PF13855 LRR_8: Leucine rich r 98.8 2.5E-09 5.4E-14 80.3 2.7 60 215-274 1-61 (61)
51 KOG4579|consensus 98.7 1.2E-09 2.5E-14 92.8 -1.4 131 168-300 28-161 (177)
52 smart00331 PP2C_SIG Sigma fact 98.7 6.2E-07 1.3E-11 84.3 15.7 130 301-445 30-160 (193)
53 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 76.8 2.8 58 168-226 2-60 (61)
54 KOG1859|consensus 98.7 4.9E-10 1.1E-14 118.2 -6.6 127 168-300 165-294 (1096)
55 PLN03150 hypothetical protein; 98.6 1.2E-07 2.7E-12 104.9 9.5 89 192-282 420-511 (623)
56 COG5238 RNA1 Ran GTPase-activa 98.6 1.5E-08 3.2E-13 95.7 0.4 195 78-278 88-319 (388)
57 KOG1859|consensus 98.5 1.1E-09 2.4E-14 115.5 -7.8 183 15-206 102-295 (1096)
58 PF07228 SpoIIE: Stage II spor 98.5 5.6E-06 1.2E-10 77.7 16.6 156 305-475 8-193 (193)
59 TIGR02865 spore_II_E stage II 98.5 5.1E-06 1.1E-10 93.6 18.4 156 303-474 582-763 (764)
60 PLN03150 hypothetical protein; 98.4 5.9E-07 1.3E-11 99.5 8.9 106 168-275 419-528 (623)
61 KOG4579|consensus 98.4 1.8E-08 3.9E-13 85.7 -3.3 126 147-275 29-159 (177)
62 KOG1644|consensus 98.4 6.5E-07 1.4E-11 81.4 5.8 106 166-273 41-151 (233)
63 KOG4658|consensus 98.3 4.4E-07 9.6E-12 103.0 4.6 41 1-41 573-614 (889)
64 PF13672 PP2C_2: Protein phosp 98.2 1.2E-05 2.6E-10 76.7 12.4 77 360-445 96-178 (212)
65 PRK15386 type III secretion pr 98.2 3.5E-06 7.6E-11 86.4 9.0 54 101-155 49-104 (426)
66 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.4E-11 60.8 2.7 39 1-39 3-41 (44)
67 PRK15386 type III secretion pr 98.2 9.5E-06 2.1E-10 83.3 10.1 132 83-227 53-189 (426)
68 KOG2982|consensus 98.2 3.9E-07 8.6E-12 87.3 0.1 192 82-275 71-290 (418)
69 KOG4658|consensus 98.2 1.9E-06 4.2E-11 97.9 5.6 97 181-277 708-809 (889)
70 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.9E-11 59.2 3.5 39 239-278 2-40 (44)
71 KOG2982|consensus 98.1 6.9E-07 1.5E-11 85.7 1.0 191 84-275 47-262 (418)
72 COG5238 RNA1 Ran GTPase-activa 98.1 5E-07 1.1E-11 85.6 -0.3 168 99-275 87-285 (388)
73 KOG1644|consensus 97.9 1.5E-05 3.2E-10 72.7 5.3 107 145-251 42-153 (233)
74 KOG2120|consensus 97.8 7.4E-07 1.6E-11 85.5 -4.7 166 105-272 186-373 (419)
75 KOG2120|consensus 97.8 4.2E-07 9.1E-12 87.1 -6.6 165 82-249 185-374 (419)
76 KOG3665|consensus 97.4 4.4E-05 9.5E-10 84.8 1.0 124 125-251 122-263 (699)
77 KOG2739|consensus 97.4 0.00011 2.4E-09 69.9 3.2 65 214-278 90-159 (260)
78 PF13306 LRR_5: Leucine rich r 97.2 0.00056 1.2E-08 59.4 5.8 107 166-279 11-119 (129)
79 KOG3665|consensus 97.2 0.00029 6.2E-09 78.4 4.2 129 144-275 121-263 (699)
80 PF13306 LRR_5: Leucine rich r 97.2 0.00087 1.9E-08 58.1 6.3 113 146-265 13-129 (129)
81 KOG2123|consensus 97.1 2.5E-05 5.4E-10 74.6 -4.2 80 81-160 18-103 (388)
82 KOG2739|consensus 97.1 0.00027 5.8E-09 67.3 2.7 84 188-276 41-130 (260)
83 KOG2123|consensus 96.9 5.6E-05 1.2E-09 72.2 -4.2 97 168-268 20-123 (388)
84 KOG4341|consensus 96.6 4.6E-05 9.9E-10 76.7 -7.1 84 166-249 293-383 (483)
85 COG2208 RsbU Serine phosphatas 95.9 0.13 2.8E-06 53.5 13.3 107 361-475 231-366 (367)
86 PF00560 LRR_1: Leucine Rich R 95.7 0.0032 7E-08 36.2 0.3 20 1-20 2-21 (22)
87 PF00560 LRR_1: Leucine Rich R 95.3 0.0075 1.6E-07 34.7 0.9 21 168-188 1-21 (22)
88 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 31.1 1.3 16 263-278 2-17 (17)
89 KOG4308|consensus 94.9 0.0004 8.8E-09 74.0 -9.4 129 146-275 145-303 (478)
90 smart00369 LRR_TYP Leucine-ric 94.5 0.037 8E-07 33.2 2.4 23 21-43 1-23 (26)
91 smart00370 LRR Leucine-rich re 94.5 0.037 8E-07 33.2 2.4 23 21-43 1-23 (26)
92 PF13504 LRR_7: Leucine rich r 94.3 0.024 5.2E-07 30.3 1.2 17 22-38 1-17 (17)
93 KOG4308|consensus 93.8 0.00067 1.5E-08 72.3 -10.5 59 169-229 235-304 (478)
94 smart00369 LRR_TYP Leucine-ric 93.8 0.057 1.2E-06 32.3 2.3 21 238-258 2-22 (26)
95 smart00370 LRR Leucine-rich re 93.8 0.057 1.2E-06 32.3 2.3 21 238-258 2-22 (26)
96 KOG0473|consensus 92.6 0.0038 8.3E-08 58.5 -6.2 93 180-275 31-124 (326)
97 KOG0473|consensus 91.5 0.0058 1.2E-07 57.3 -6.3 84 166-251 41-124 (326)
98 KOG0699|consensus 91.3 0.25 5.5E-06 49.1 4.3 61 294-354 43-104 (542)
99 smart00364 LRR_BAC Leucine-ric 86.4 0.46 9.9E-06 28.4 1.4 18 262-279 2-19 (26)
100 KOG3864|consensus 84.8 0.27 5.8E-06 45.5 -0.1 33 168-200 102-135 (221)
101 KOG4341|consensus 84.7 0.12 2.6E-06 52.8 -2.7 195 79-273 213-437 (483)
102 smart00365 LRR_SD22 Leucine-ri 81.7 1.2 2.5E-05 26.8 1.8 18 21-38 1-18 (26)
103 KOG1947|consensus 81.4 0.9 2E-05 48.7 2.2 107 167-274 188-307 (482)
104 smart00364 LRR_BAC Leucine-ric 80.2 1.2 2.7E-05 26.6 1.5 17 216-232 3-19 (26)
105 KOG1947|consensus 77.2 1.3 2.8E-05 47.4 1.8 127 144-271 187-330 (482)
106 KOG3763|consensus 73.1 2.3 4.9E-05 45.4 2.2 63 188-251 216-283 (585)
107 PF13516 LRR_6: Leucine Rich r 71.7 1.9 4.1E-05 25.0 0.8 16 21-36 1-16 (24)
108 KOG3763|consensus 71.6 1.7 3.8E-05 46.2 1.0 63 166-229 217-284 (585)
109 KOG3864|consensus 64.4 1.3 2.8E-05 41.1 -1.5 31 147-177 103-135 (221)
110 smart00368 LRR_RI Leucine rich 58.0 8.5 0.00018 23.3 1.8 14 262-275 2-15 (28)
111 TIGR00864 PCC polycystin catio 51.1 10 0.00023 48.3 2.6 31 221-251 1-32 (2740)
112 KOG4242|consensus 35.6 1.6E+02 0.0034 31.4 7.8 244 22-278 165-456 (553)
113 COG2144 Selenophosphate synthe 35.0 54 0.0012 32.4 4.2 13 433-445 52-64 (324)
114 PF09436 DUF2016: Domain of un 29.3 30 0.00065 26.5 1.2 16 430-445 23-38 (72)
115 smart00367 LRR_CC Leucine-rich 28.7 40 0.00087 19.8 1.5 15 21-35 1-16 (26)
116 TIGR00864 PCC polycystin catio 27.8 41 0.00088 43.4 2.5 32 196-228 1-32 (2740)
117 TIGR03884 sel_bind_Methan sele 25.3 2.2E+02 0.0049 21.9 5.2 36 436-477 19-54 (74)
118 COG1160 Predicted GTPases [Gen 23.9 2.6E+02 0.0056 29.7 7.2 77 416-494 34-114 (444)
119 cd01457 vWA_ORF176_type VWA OR 22.3 3.4E+02 0.0073 25.1 7.3 42 434-475 108-150 (199)
No 1
>KOG0618|consensus
Probab=100.00 E-value=4.2e-48 Score=409.43 Aligned_cols=531 Identities=31% Similarity=0.433 Sum_probs=413.2
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.|||++|.+..+|..+..+.+|+.|+++.|.|..+|... .++..|+.+ ....+.+...+..+..
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~l-------------nL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYL-------------NLKNNRLQSLPASISE 112 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhh-------------eeccchhhcCchhHHh
Confidence 67899999999999988999999999999999999988544 356666665 3333344444455556
Q ss_pred CCCccEEEecCCCCCCcc-c----------------------------------------cCCCCCcc-EEEccCCCCCC
Q psy12423 81 KGELTSVNLRSNQLKGTI-I----------------------------------------LGNYGNLT-TLDVSENSIES 118 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~-~----------------------------------------l~~l~~L~-~L~L~~n~l~~ 118 (567)
+.+|++|++++|++...+ . .....+|+ .|+|++|.+..
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEV 192 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhh
Confidence 666777777776654322 0 00112233 38888888886
Q ss_pred CCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECc
Q psy12423 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS 198 (567)
Q Consensus 119 ~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 198 (567)
+++..+.+|+.|.+..|++..+....++|+.|+.++|.++.......+.+|++++++.|+++.+|+|+..+.+|+.|++.
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 77888899999999999999999999999999999999997766666899999999999999999999999999999999
Q ss_pred CCCCCCCChhhhh---------------------ccCCCccEEECCCCCCCCCchhh-----------------------
Q psy12423 199 HNRITQLPSQFFC---------------------RELGKLHTLQLSFNRLTSLPSLI----------------------- 234 (567)
Q Consensus 199 ~N~l~~l~~~~~~---------------------~~l~~L~~L~Ls~N~l~~lp~~~----------------------- 234 (567)
+|.++.+|..++. ..++.|+.|+|..|+|..+|+.+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 9999877766543 12668889999999887765421
Q ss_pred ---------------------------hCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC------
Q psy12423 235 ---------------------------RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ------ 281 (567)
Q Consensus 235 ---------------------------~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~------ 281 (567)
.++++|+.|+|++|+|..+|...+.++..|++|+||+|+++.||..+
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 14678999999999999999988888888888888888888777540
Q ss_pred -------------------------------------------cCCcc--------------------------------
Q psy12423 282 -------------------------------------------KGFYL-------------------------------- 286 (567)
Q Consensus 282 -------------------------------------------~~~~~-------------------------------- 286 (567)
..+..
T Consensus 433 ~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~ 512 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNT 512 (1081)
T ss_pred HHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCC
Confidence 01111
Q ss_pred -----------------------ceeecccCCccccC-CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHH
Q psy12423 287 -----------------------LNISQLRLPGFCNS-DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMK 342 (567)
Q Consensus 287 -----------------------L~~~~l~~~~~~~~-~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~ 342 (567)
+.+......+|+.. .+.|+.++|..+..++..+.+..-.++.++........++|.
T Consensus 513 ~d~~~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr 592 (1081)
T KOG0618|consen 513 PDGNVNAFLWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMR 592 (1081)
T ss_pred CccccceeheeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 11111112344444 778999999999999999999999999999888888888999
Q ss_pred HHHHHHHHHHhhhcccccCceeEEEEeecCc--cceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------
Q psy12423 343 YTMLTAHREIKDSLHRYSLSATLCHLSLHPV--THRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------- 405 (567)
Q Consensus 343 ~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~--~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------- 405 (567)
.+|+..+++++..++..++.++.|.+.-.+- ...+++.+|++|+|.|++||+|+.++.|+...
T Consensus 593 ~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~ 672 (1081)
T KOG0618|consen 593 NTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSK 672 (1081)
T ss_pred HHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhc
Confidence 9999999999999999999999998876533 33457999999999999999999888765542
Q ss_pred --------------CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC----------------CHHHHHHHHH
Q psy12423 406 --------------LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS----------------EPVLAAKRIQ 455 (567)
Q Consensus 406 --------------~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------~~~~~a~~l~ 455 (567)
.+|++|.+...|+|.|.|+|....|+++|+|||+|+.++| ||..||++|+
T Consensus 673 g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~ 752 (1081)
T KOG0618|consen 673 GFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLC 752 (1081)
T ss_pred CeecCCCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHH
Confidence 6899999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHcCCCCCcEEEEEEeC--CCCcChhhH-------HHHHhhh-cCC---CC---------------CCCCCCcccc-
Q psy12423 456 DLAQSYGSEDNLSVLVLRFQ--GSEFDSRTR-------DAKLSSM-RKL---GV---------------QDPECPWTIE- 506 (567)
Q Consensus 456 ~~a~~~g~~dnit~~vv~~~--~~~~~~~~~-------~~~~~~~-~~~---~~---------------~~~~~~~~~~- 506 (567)
|.|++||+.|||+|+||++. .+.++++.. +.+++.+ ++| +. .|++-|+.+.
T Consensus 753 d~AqSYgc~~nv~vlVv~l~~~~~~~~e~t~~~~~~~~~f~~st~~~rp~pvs~P~ss~~m~~r~~~~~sna~m~re~~~ 832 (1081)
T KOG0618|consen 753 DLAQSYGCAENVSVLVVRLNHLEECVDEFTLEKNPNPSEFKDSTRLDRPQPVSPPSSSIAMVFRTAIKTSNAIMRRELRQ 832 (1081)
T ss_pred HHHHhcccccCeeEEEEEeecchhhccccccccCCCccccccccccccCCCCCCCCcchHHHHHHHHhhhhHHHHHHhcc
Confidence 99999999999999999999 667777777 5566664 222 11 5666666666
Q ss_pred ---CCCCCCCCCCCCCCCCCc------eee-------------eeeeeccCCcccccCCcc
Q psy12423 507 ---YDRSSPSGQSDQASSGHT------AVM-------------TDTIYNKMDKYNFGDRRS 545 (567)
Q Consensus 507 ---~~~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~ 545 (567)
+.+..|+|+.+.+.-.-+ .|| +..++-+-|-|--.++|.
T Consensus 833 ~~~a~v~~p~ga~~~~~p~~p~~~~c~s~p~~ll~~q~~~ei~~~~s~~s~ngldl~~~r~ 893 (1081)
T KOG0618|consen 833 EPGAEVKTPGGAFMVAFPAPPSLDWCSSVPLPLLSAQEPEEIATFQSVTSSNGLDLSTERF 893 (1081)
T ss_pred CCCCCCCCCCCccccccCCCCCccchhccccccccccccchhhhhhhhcccCCcccccccc
Confidence 367788888765432222 122 344455666677777775
No 2
>KOG4194|consensus
Probab=99.96 E-value=2.5e-31 Score=269.23 Aligned_cols=420 Identities=18% Similarity=0.192 Sum_probs=256.9
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|+.||||.|.|++|| .+|..-.++++|+|++|.|+.+..+.|.+|..|..+ .+..+..+.++. ..++
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl----------kLsrNrittLp~--r~Fk 218 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL----------KLSRNRITTLPQ--RSFK 218 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee----------ecccCcccccCH--HHhh
Confidence 456777777777776 356666677777777777777766666655544433 222333333333 4556
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISV 150 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L 150 (567)
.+++|+.|+|..|+|.... .|.++++|+.|.|..|.|..+. |..+.++++|+|..|++..+. .++.+|+.|
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 6778888888888776543 6777888888888888777663 666778888888888877654 456788888
Q ss_pred EcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423 151 IAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 151 ~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
++++|.|..+....+ .++|+.|+|++|+|++++ ..|..+..|++|+|++|+|+.+....|.+ +++|+.|||++|.|
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNEL 377 (873)
T ss_pred ccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeE
Confidence 888888888777665 778888888888888875 46777888888888888888888887776 88888888888877
Q ss_pred CC-C---chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc-ccC--
Q psy12423 228 TS-L---PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF-CNS-- 300 (567)
Q Consensus 228 ~~-l---p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~-~~~-- 300 (567)
.. + ...|.++++|+.|.|.+|+|..||...|.+++.|+.|||.+|.|.+|....+.--.|+-+.+....| |++
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 64 2 2346778888888888888888888888888888888888888887765433211443333333333 322
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHH--HHhhhc-ccccCceeEEEEeec-Cccce
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHR--EIKDSL-HRYSLSATLCHLSLH-PVTHR 376 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~--~i~~~~-~~~~~st~~~~~~~~-~~~~~ 376 (567)
.++..|+.+..-. .+....|..|+++...-.......+..|.-+.+..- +..... .....-+..|.+... .+
T Consensus 458 ~Wl~qWl~~~~lq-~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssas--- 533 (873)
T KOG4194|consen 458 KWLAQWLYRRKLQ-SSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSAS--- 533 (873)
T ss_pred HHHHHHHHhcccc-cceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCC---
Confidence 3333343332111 233344555666655544444444544443322110 000000 011112333433221 11
Q ss_pred EEEEEEEecCceEEEEeCCeeeeCCCCCC----CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC
Q psy12423 377 YMLHIASVGEAKAILCRQAGSLTFTHAPT----LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS 445 (567)
Q Consensus 377 ~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~ 445 (567)
.+.++|--|.. +.- ....+|.. .-| -|.++..-...+.-...-+..++.++|=.+++..+-
T Consensus 534 -plsi~WR~dne-vq~-----rv~ved~a~~~~q~r-~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FG 598 (873)
T KOG4194|consen 534 -PLSIEWRKDNE-VQP-----RVDVEDFATFLSQNR-NGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFG 598 (873)
T ss_pred -CceeEeeeccc-cCc-----ccchhcchhhhhhhc-cCccchhhhhhheeeeeeeecccCceEEEEEecccC
Confidence 45555555553 211 12222222 222 233332223344556666667777888888887775
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.95 E-value=2e-27 Score=241.60 Aligned_cols=172 Identities=22% Similarity=0.356 Sum_probs=145.6
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc---cccCceeEEEEeecCccceE
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH---RYSLSATLCHLSLHPVTHRY 377 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~---~~~~st~~~~~~~~~~~~~~ 377 (567)
..+|+++|||++...+.+....++..+.+.........+++..+|..++..+.+... ...+++|++++.+.+.
T Consensus 103 ~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~---- 178 (365)
T PLN03145 103 SAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGR---- 178 (365)
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECC----
Confidence 468999999999999999999999988776555445678899999999998865422 2235566555555555
Q ss_pred EEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC-------CCccCCC
Q psy12423 378 MLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC-------PLSFPDP 423 (567)
Q Consensus 378 ~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~-------~~~~~~p 423 (567)
.+++||+||||||++|+|+.++||+||+ ++|++|+..++ ..++++|
T Consensus 179 ~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~eP 258 (365)
T PLN03145 179 SLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEP 258 (365)
T ss_pred eEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEE
Confidence 8999999999999999999999999998 68899986553 2478899
Q ss_pred ceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423 424 HVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476 (567)
Q Consensus 424 ~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~ 476 (567)
||..++++++|+|||||||||| +|+++|+.|++.|+.+|+.||||||||+|+.
T Consensus 259 dv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 259 ELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQS 331 (365)
T ss_pred EEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 9999999999999999999999 5677899999999999999999999999994
No 4
>KOG4194|consensus
Probab=99.95 E-value=8.8e-29 Score=250.88 Aligned_cols=326 Identities=22% Similarity=0.281 Sum_probs=205.2
Q ss_pred cEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhc--cCcCchhhhhhccchh----------hcccccccc
Q psy12423 2 QEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAEE----------REEDFEQDE 68 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~--~L~~L~~l~~~~~~~~----------~~~~~~~~~ 68 (567)
+.|++++|.|..+. ..|.++++|+.++|..|.++.||.+... .+..|..- ++.+.. .++..+...
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~--~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR--HNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee--ccccccccHHHHHhHhhhhhhhhhh
Confidence 45889999988774 5688899999999999988888865532 23333321 222211 011112222
Q ss_pred CCccccc-CCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-
Q psy12423 69 DGIIVER-REPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV- 141 (567)
Q Consensus 69 ~~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~- 141 (567)
+.+...+ ..+..-.++++|+|++|.|+... .|.++.+|..|.|+.|+|+.++ |..+++|+.|+|..|+|....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 2222222 22334457888888888888654 6777778888888888888775 556778888888888766442
Q ss_pred ---cCCC------------------------CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcC
Q psy12423 142 ---LNGS------------------------SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPE 191 (567)
Q Consensus 142 ---~~~~------------------------~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~ 191 (567)
..++ ++++|++..|++..+...+. +++|+.|+||+|.|..| ++.++..++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 2234 44445555555544444433 45555555555555544 234444555
Q ss_pred CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCC---CchhhhcCCCCCcEE
Q psy12423 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINI---LPQLFLQNSSKLKVL 267 (567)
Q Consensus 192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~---l~~~~l~~l~~L~~L 267 (567)
|++|+|++|+|+.++++.|.. +..|++|.|++|.|..+.+ .|..+++|+.|||++|.|+. -....|..+++|+.|
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ceeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 555555555555555555544 5555555555555555433 45667777777777777662 233456778889999
Q ss_pred EccCCcCCCCCCC-CcCCccceeecccCCccccC--CcceeeccC-----CCCchhhhHHhhhhHHHHHhhh
Q psy12423 268 NISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DALIGIFDS-----GDNGDIASTLVQSIPRILLEER 331 (567)
Q Consensus 268 ~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~~~~~dg-----~~~~~is~~l~~~lP~~l~~~~ 331 (567)
+|.+|+|+.||.. +.++..|..+++..|..... .||-.+ .. ......|+|-..|++.|+....
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 9999999999975 44888899999988877665 444333 21 3445678888889999987654
No 5
>KOG0697|consensus
Probab=99.94 E-value=5.3e-26 Score=210.10 Aligned_cols=171 Identities=18% Similarity=0.295 Sum_probs=144.8
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh--------hhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEE
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE--------TASDYMKYTMLTAHREIKDSLHR----YSLSATLCHL 368 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~--------~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~ 368 (567)
-.||.+||||.+..++++.+.++-+.+.....+.. ..+.-++..|+++++.++..... ..++++++.+
T Consensus 53 WSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv 132 (379)
T KOG0697|consen 53 WSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCV 132 (379)
T ss_pred ceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEE
Confidence 45899999999999999998887776666555443 34677888999999876653221 1144444446
Q ss_pred eecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCC------
Q psy12423 369 SLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGS------ 415 (567)
Q Consensus 369 ~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~------ 415 (567)
++.|. ++|++|+|||||++||+|...--|.||+ ++||+||+.+
T Consensus 133 ~vsp~----h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~k 208 (379)
T KOG0697|consen 133 FVSPT----HIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGK 208 (379)
T ss_pred EecCc----eEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCC
Confidence 77777 9999999999999999999999999999 8999999977
Q ss_pred ---CCCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy12423 416 ---CPLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVL 472 (567)
Q Consensus 416 ---~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv 472 (567)
.+.|+|+|||......+.|+|+|+||||+| |...+|..++|.++.+|++||+|+++|
T Consensus 209 gp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlv 288 (379)
T KOG0697|consen 209 GPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLV 288 (379)
T ss_pred CchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEE
Confidence 566999999999999999999999999999 788899999999999999999999999
Q ss_pred EeC
Q psy12423 473 RFQ 475 (567)
Q Consensus 473 ~~~ 475 (567)
.|.
T Consensus 289 cfp 291 (379)
T KOG0697|consen 289 CFP 291 (379)
T ss_pred ecC
Confidence 998
No 6
>KOG0698|consensus
Probab=99.93 E-value=1.5e-25 Score=227.13 Aligned_cols=174 Identities=25% Similarity=0.372 Sum_probs=148.3
Q ss_pred CCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh---hhhHHHHHHHH-HHHHHHhhh-cc-cccCceeEEEEeecCc
Q psy12423 300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE---TASDYMKYTML-TAHREIKDS-LH-RYSLSATLCHLSLHPV 373 (567)
Q Consensus 300 ~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~---~~~~~l~~a~l-~~n~~i~~~-~~-~~~~st~~~~~~~~~~ 373 (567)
..++|++||||++..++.++...+|..+.++..... ...+++..+|. .++..+... .. ..+++++++.+.....
T Consensus 74 ~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~ 153 (330)
T KOG0698|consen 74 DTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGR 153 (330)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCC
Confidence 368999999999999999999999999988876554 36899999999 599988754 11 2344444444444343
Q ss_pred cceEEEEEEEecCceEEEEeCC-eeeeCCCCCC-------------------------------CCCCCCCCCCC-CCcc
Q psy12423 374 THRYMLHIASVGEAKAILCRQA-GSLTFTHAPT-------------------------------LSPPVPPQGSC-PLSF 420 (567)
Q Consensus 374 ~~~~~l~~a~~Gdsr~~l~r~~-~~~~lt~dh~-------------------------------~~r~~g~~~~~-~~~~ 420 (567)
++++||+||||||++++| .+++||.||+ ++|++||..++ ++|+
T Consensus 154 ----~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~ 229 (330)
T KOG0698|consen 154 ----KLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVI 229 (330)
T ss_pred ----EEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEe
Confidence 899999999999999876 6999999999 67889998888 9999
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 421 PDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 421 ~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
++|||....++++|+|||||||||| +++.+|+.+.+.|..+|+.||||||||+|...
T Consensus 230 a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~ 306 (330)
T KOG0698|consen 230 AEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSS 306 (330)
T ss_pred cCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCc
Confidence 9999999999999999999999999 56778899999999999999999999999943
No 7
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.93 E-value=9.7e-25 Score=222.67 Aligned_cols=166 Identities=25% Similarity=0.390 Sum_probs=133.0
Q ss_pred cceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEE
Q psy12423 302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHI 381 (567)
Q Consensus 302 ~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~ 381 (567)
.+++++|||++..++.++...++.++.+... ....+.+..++..++.++.......|+++++| +..... .+++
T Consensus 49 ~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~--~~~~~~l~~a~~~~d~~i~~~~~~~GsTatv~-lI~~~~----~l~v 121 (381)
T PTZ00224 49 GFFGVFDGHVNDECSQYLARAWPQALEKEPE--PMTDERMEELCLEIDEEWMDSGREGGSTGTFC-VIMKDV----HLQV 121 (381)
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHHhcccCCCCeEEEE-EEEECC----EEEE
Confidence 5899999999999999999999987754322 12345688899999988876544443333333 333333 7999
Q ss_pred EEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCC---------CCCccCCCce
Q psy12423 382 ASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGS---------CPLSFPDPHV 425 (567)
Q Consensus 382 a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~---------~~~~~~~p~v 425 (567)
||+||||+|++|+|+.++||+||+ ++|++|+..+ .+.++++|||
T Consensus 122 aNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi 201 (381)
T PTZ00224 122 GNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDV 201 (381)
T ss_pred EEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEE
Confidence 999999999999999999999999 5788898643 2356789999
Q ss_pred EEEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423 426 TEVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475 (567)
Q Consensus 426 ~~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~ 475 (567)
..+.+.++ +|||||||||| +++.+|+.|++.|+.+|+.||||||||++.
T Consensus 202 ~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 202 THLTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred EEEECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 99999875 58899999999 355689999999999999999999999998
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.5e-24 Score=253.45 Aligned_cols=282 Identities=24% Similarity=0.342 Sum_probs=213.1
Q ss_pred CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423 1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (567)
++.|+|++|.++ .+|..|..+++|+.|+|++|.+. .+|..++..++.|+.+ ++..+...+. .+.
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L----------~Ls~n~l~~~----~p~ 136 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL----------NLSNNNFTGS----IPR 136 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEE----------ECcCCccccc----cCc
Confidence 357999999988 55778999999999999999998 6999888777777766 1112222211 112
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----LNGSSLIS 149 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~ 149 (567)
..+++|++|+|++|.+.+.. .++++++|++|++++|.+... .++.+++|++|++++|.+.... ..+.+|+.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 45778888999888887544 578888888888888887653 3677888888888888876543 35678888
Q ss_pred EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCC
Q psy12423 150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFN 225 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N 225 (567)
|++++|.+.+..+..+ +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.. +++|++|+|++|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n 294 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDN 294 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCC
Confidence 8888888876665554 788888888888887 56778888888888888888887 45555543 788888888888
Q ss_pred CCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccc
Q psy12423 226 RLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 226 ~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
.+.+ +|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|..+..+..|..+++..|.+.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 8874 6777788888888888888887655556678888888888888887 66766666677777766666554
No 9
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.91 E-value=1.3e-24 Score=214.07 Aligned_cols=163 Identities=25% Similarity=0.415 Sum_probs=130.0
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh--hhhHHHHHHHHH-HHHHHhhhc---ccccCceeEEEEeecCcc
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE--TASDYMKYTMLT-AHREIKDSL---HRYSLSATLCHLSLHPVT 374 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~--~~~~~l~~a~l~-~n~~i~~~~---~~~~~st~~~~~~~~~~~ 374 (567)
..+|+++|||++..++.+....+|..+.+...... ...+++..+|.. ++..+.... ....++++++++.+...
T Consensus 33 ~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~- 111 (254)
T PF00481_consen 33 VSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGN- 111 (254)
T ss_dssp EEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETT-
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccccccccccccccccccccc-
Confidence 77899999999999999999999988777766544 368999999999 777776521 23444555555555555
Q ss_pred ceEEEEEEEecCceEEEEeCCeee-eCCCCCC----------------------------CCCCCCCCCCCC----CccC
Q psy12423 375 HRYMLHIASVGEAKAILCRQAGSL-TFTHAPT----------------------------LSPPVPPQGSCP----LSFP 421 (567)
Q Consensus 375 ~~~~l~~a~~Gdsr~~l~r~~~~~-~lt~dh~----------------------------~~r~~g~~~~~~----~~~~ 421 (567)
++++||+||||||+++.+... +||+||+ ++|++||..+++ +|++
T Consensus 112 ---~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~ 188 (254)
T PF00481_consen 112 ---KLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIA 188 (254)
T ss_dssp ---EEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB-
T ss_pred ---eeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccccceeee
Confidence 899999999999999999988 9999998 689999998876 9999
Q ss_pred CCceEEEEecCCCeEEEEEcCCCC----------------C----HHHHHHHHHHHHHHcCCCCCc
Q psy12423 422 DPHVTEVMLHENDHFLILANKSVS----------------E----PVLAAKRIQDLAQSYGSEDNL 467 (567)
Q Consensus 422 ~p~v~~~~l~~~d~~lil~sDGl~----------------~----~~~~a~~l~~~a~~~g~~dni 467 (567)
+|+|..+.++++|+|||||||||| + |+.+|++|++.|+++|+.|||
T Consensus 189 ~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 189 EPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp --EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999 2 889999999999999999997
No 10
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-23 Score=206.08 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=136.1
Q ss_pred cceeeccCCCCchhhhHHhhhhHHHHHhhhhh----hhh--hhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeec
Q psy12423 302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTV----KET--ASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLH 371 (567)
Q Consensus 302 ~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l----~~~--~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~ 371 (567)
.++.++||+++........+.+...+.+.... ... ..+++.+++..++..+..... ..++++|++.+...
T Consensus 39 ~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~ 118 (262)
T COG0631 39 LLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIR 118 (262)
T ss_pred eEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEE
Confidence 48899999988777776666665555544221 111 478999999999998877643 34566666666666
Q ss_pred CccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEE
Q psy12423 372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTE 427 (567)
Q Consensus 372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~ 427 (567)
.. ++++||+||||+|++|+|+.+|+|.||+ ++|++|+... +.|++..
T Consensus 119 ~~----~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~~ltralG~~~~-----~~p~~~~ 189 (262)
T COG0631 119 GN----KLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGDFDL-----LEPDITE 189 (262)
T ss_pred CC----eEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccchhhhhhcCCCcc-----cceeEEE
Confidence 55 8999999999999999999999999999 5788897663 7899999
Q ss_pred EEecCCCeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 428 VMLHENDHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 428 ~~l~~~d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
.++.++ +|+|||||||| +|+.+|++|++.|+.+|+.|||||++|++...
T Consensus 190 ~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~ 254 (262)
T COG0631 190 LELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLVRLNGE 254 (262)
T ss_pred EEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeecc
Confidence 999997 88889999999 78899999999999999999999999998844
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=6.3e-24 Score=248.15 Aligned_cols=283 Identities=25% Similarity=0.280 Sum_probs=137.8
Q ss_pred CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCCCCC-CChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423 1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRISH-LPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (567)
|++|+|++|.++ .+|..++++++|++|+|++|.+.. +|..+ ..++.|+.+. +..+...+ ..+..+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~----------L~~n~l~~--~~p~~l 208 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLT----------LASNQLVG--QIPREL 208 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeee----------ccCCCCcC--cCChHH
Confidence 455566666555 456566666666666666666653 44333 3444444430 00111110 112223
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCcccc--------------
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKT-------------- 139 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~-------------- 139 (567)
..+++|++|+|++|.+.+.. .++.+++|++|++++|.+... .++.+++|++|++++|.+.+
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 34445555555555444322 344444555555555544321 13344444444444444432
Q ss_pred ----------ee----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCC
Q psy12423 140 ----------LV----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRI 202 (567)
Q Consensus 140 ----------l~----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l 202 (567)
.. ..+++|+.|++++|.+++..+..+ +++|+.|++++|.+. .+|.++..+++|+.|++++|.+
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 21 123344444444444443333222 444444444444444 3444444445555555555544
Q ss_pred C-CCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCC
Q psy12423 203 T-QLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPS 279 (567)
Q Consensus 203 ~-~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~ 279 (567)
+ .+|..+.. +++|+.|++++|.+.+ +|..+..+++|+.|++++|.+++..+..|..++.|+.|++++|.++ .+|.
T Consensus 369 ~~~~p~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 369 TGEIPEGLCS--SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred EeeCChhHhC--cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 4 23332221 4455555555555543 4555566666666666666666444444566677777777777766 3444
Q ss_pred CCcCCccceeecccCCccc
Q psy12423 280 LQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 280 ~~~~~~~L~~~~l~~~~~~ 298 (567)
....+..|..+++..|.+.
T Consensus 447 ~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred hhccCCCCcEEECcCceee
Confidence 4445666666666666554
No 12
>KOG0444|consensus
Probab=99.91 E-value=1.9e-26 Score=235.30 Aligned_cols=262 Identities=23% Similarity=0.298 Sum_probs=118.5
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.||||+|+++++|..+..-+++-.|+||+|+|.+||..+|.+|..|-.+ +.+.+.+..++.....
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL-------------DLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL-------------DLSNNRLEMLPPQIRR 171 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh-------------ccccchhhhcCHHHHH
Confidence 345555555555555555555555555555555555555555444433332 1112222222222233
Q ss_pred CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C--CCcccccCcEEEcccCccccee---cCCCCCcEEE
Q psy12423 81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L--DLGALNRLESIKCSRNQLKTLV---LNGSSLISVI 151 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~--~~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~ 151 (567)
+.+|++|+|++|.+.... .+..+++|+.|.+++.+-+- + ++..+.+|..+++|.|++..++ ..+.+|+.|+
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 344444444444433211 23333344444444433221 1 1334444445555555444444 2234444445
Q ss_pred cCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCC--CCChhhhhccCCCccEEECCCCCCC
Q psy12423 152 AGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT--QLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 152 l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
+++|+|+.+....- ..+|++|+||.|+++.+|+.+..++.|+.|.+.+|+++ .||.++.. +.+|+.+..++|++.
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK--L~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK--LIQLEVFHAANNKLE 329 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh--hhhhHHHHhhccccc
Confidence 55554444433222 33444455555555555544444455555555444443 44444433 444444444444444
Q ss_pred CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423 229 SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 229 ~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
-+|+.+..|..|+.|.|+.|++-.+|..+ .-++.|+.||+..|+=-..|
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCchhhhhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcCccCC
Confidence 44444444445555555555444444433 23444455555544433333
No 13
>KOG0444|consensus
Probab=99.91 E-value=1.2e-26 Score=236.64 Aligned_cols=281 Identities=27% Similarity=0.306 Sum_probs=155.4
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
+-|.|...++..+|+.++.|.+|++|.+++|++.++-..+. .|+.|+.+. ....+....|+| ..+..+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~--------~R~N~LKnsGiP---~diF~l 102 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVI--------VRDNNLKNSGIP---TDIFRL 102 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHh--------hhccccccCCCC---chhccc
Confidence 44666666777777777777777777777777665543332 344444331 011111222222 334455
Q ss_pred CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecC---CCCCcEEEcCC
Q psy12423 82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLN---GSSLISVIAGN 154 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~---~~~L~~L~l~~ 154 (567)
..|+.||||+|+++..+ .+..-+++-.|+|++|+|..++ +.++..|-.|+||+|.+..+++. +..|++|.+++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 56666666666666554 4444555666666666666554 33444555555555555554432 23334444444
Q ss_pred Ccccc--------------------------ccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCCh
Q psy12423 155 NKLQS--------------------------LIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207 (567)
Q Consensus 155 n~l~~--------------------------~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~ 207 (567)
|.+.. ++...- +.+|..+|||.|.+..+|+.+..+++|+.|+|++|+|+.+..
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec
Confidence 33211 111111 456666666666666666666666666666666666665554
Q ss_pred hhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCC--CCchhh----------------------hcCCCC
Q psy12423 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN--ILPQLF----------------------LQNSSK 263 (567)
Q Consensus 208 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~l~~~~----------------------l~~l~~ 263 (567)
.... +.+|+.|+||.|+++.+|..+..++.|+.|++.+|+++ +||.++ +..|..
T Consensus 263 ~~~~--W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 263 TEGE--WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK 340 (1255)
T ss_pred cHHH--HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence 4433 45666666666666666666655666666655555544 444443 135566
Q ss_pred CcEEEccCCcCCCCCCCCcCCccceeecccCCc
Q psy12423 264 LKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296 (567)
Q Consensus 264 L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~ 296 (567)
|+.|.|+.|++-++|..+.-+..|.+++++.|+
T Consensus 341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence 666666666666666666666666666666553
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.8e-23 Score=226.93 Aligned_cols=257 Identities=30% Similarity=0.325 Sum_probs=192.2
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
..|+|+++.|+++|+.+. ++|+.|++++|+|+.+|... .+|+.|.. ..+....++ ...
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp-~~Lk~LdL-------------s~N~LtsLP------~lp 261 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP-PELRTLEV-------------SGNQLTSLP------VLP 261 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCC-CCCcEEEe-------------cCCccCccc------Ccc
Confidence 468999999999998775 48999999999999988632 23333322 123333322 224
Q ss_pred CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccccc
Q psy12423 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI 161 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~ 161 (567)
++|+.|+|++|.++.... .+.+|+.|++++|+++.++. .+++|+.|++++|++..++....+|+.|.+++|.++.++
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred cccceeeccCCchhhhhh--chhhcCEEECcCCccccccc-cccccceeECCCCccccCCCCcccccccccccCcccccc
Confidence 588888888888876543 23578888888888887753 357788889988888887665567888888888888765
Q ss_pred CCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCc
Q psy12423 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLK 241 (567)
Q Consensus 162 ~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 241 (567)
. ++.+|+.|+|++|+|+.+|.. ..+|+.|++++|.|+.+|.. +.+|+.|+|++|.|+.+|..+ ++|+
T Consensus 339 ~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt~LP~l~---s~L~ 405 (788)
T PRK15387 339 T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVLP---SELK 405 (788)
T ss_pred c--cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc-----ccccceEEecCCcccCCCCcc---cCCC
Confidence 3 346788899998888888763 35678888888888887753 457888888888888887643 5788
Q ss_pred EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 242 ~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
.|++++|.|+.+|.. ..+|+.|++++|+|+.||..+..+..|...++..|.+.+.
T Consensus 406 ~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 406 ELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred EEEccCCcCCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 888888888888752 3467888888888888888877788888888888877654
No 15
>KOG0472|consensus
Probab=99.89 E-value=1.3e-25 Score=219.10 Aligned_cols=282 Identities=25% Similarity=0.314 Sum_probs=206.8
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 79 (567)
|++||.-.|.++.+|+.++.+.+|+.|+|..|+|..+|.+ .+...|+.+ ....+.+...+ ...+
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef--~gcs~L~El-------------h~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF--PGCSLLKEL-------------HVGENQIEMLPAEHLK 249 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC--CccHHHHHH-------------HhcccHHHhhHHHHhc
Confidence 4556666677777777777777777777777777777622 234444443 22222222222 3345
Q ss_pred CCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec--------------
Q psy12423 80 VKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL-------------- 142 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~-------------- 142 (567)
.+++|..|||..|+++..+ .+..+.+|+.||+++|.|++++ ++++ .|+.|.+.+|.+..+..
T Consensus 250 ~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred ccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 7889999999999999877 7788899999999999999875 7888 89999999987653210
Q ss_pred -------------------------------CCCCCcEEEcCCCccccccCCCC----CCcccEEecccCCC--------
Q psy12423 143 -------------------------------NGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNEL-------- 179 (567)
Q Consensus 143 -------------------------------~~~~L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l-------- 179 (567)
..-+.+.|+++.-+++.++...| -.-....+++.|++
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 01234455555555555554443 11244455555544
Q ss_pred ----------------CCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423 180 ----------------ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243 (567)
Q Consensus 180 ----------------~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 243 (567)
.-+|..++.+++|..|+|++|-+.++|.+++. +..|+.|++++|.+..+|.++..+..|+.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~--lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS--LVRLQTLNLSFNRFRMLPECLYELQTLETL 486 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh--hhhhheecccccccccchHHHhhHHHHHHH
Confidence 44444566778888999999999999988886 777999999999888888888888888888
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
-.++|++..+++.-+.++.+|..|||.+|.+..||+..+++.+|.-+.+.+|+|...
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence 888899999988866899999999999999999999999999999999999999844
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=6.9e-22 Score=217.05 Aligned_cols=235 Identities=29% Similarity=0.338 Sum_probs=191.5
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.|++++|+|+.+|.. +++|++|+|++|+|+.+|.. +.+|+.|... .+....++ ..
T Consensus 224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls-------------~N~L~~Lp------~l 280 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-PPGLLELSIF-------------SNPLTHLP------AL 280 (788)
T ss_pred CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-ccccceeecc-------------CCchhhhh------hc
Confidence 57899999999999963 57999999999999999854 3344444322 22222222 12
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL 160 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~ 160 (567)
+.+|+.|++++|+++..+. .+++|+.|++++|+++.++. ...+|+.|++++|+++.++....+|+.|++++|+++.+
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASL 357 (788)
T ss_pred hhhcCEEECcCCccccccc--cccccceeECCCCccccCCC-CcccccccccccCccccccccccccceEecCCCccCCC
Confidence 3578999999999987653 35789999999999998753 34578899999999998876556899999999999987
Q ss_pred cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423 161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240 (567)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 240 (567)
+. .+.+|+.|++++|.|+.+|.. ..+|+.|++++|.|+.+|.. +++|+.|++++|.|+.+|..+ .+|
T Consensus 358 P~--lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~l~---~~L 424 (788)
T PRK15387 358 PT--LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPMLP---SGL 424 (788)
T ss_pred CC--CCcccceehhhccccccCccc---ccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCcch---hhh
Confidence 65 357899999999999999864 35799999999999998863 568999999999999998743 578
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+.|++++|+|+.+|..+ .++++|+.|+|++|+|+
T Consensus 425 ~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 425 LSLSVYRNQLTRLPESL-IHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhccCcccccChHH-hhccCCCeEECCCCCCC
Confidence 89999999999999875 68999999999999998
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=7.4e-22 Score=218.09 Aligned_cols=244 Identities=24% Similarity=0.298 Sum_probs=168.5
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
..|++++++++.+|..+. ++|+.|+|++|+|+.+|..++.+|+.|... .+....++. ...
T Consensus 181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls-------------~N~LtsLP~-----~l~ 240 (754)
T PRK15370 181 TELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYAN-------------SNQLTSIPA-----TLP 240 (754)
T ss_pred eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECC-------------CCccccCCh-----hhh
Confidence 578999999999997664 589999999999999998776555544332 222222221 112
Q ss_pred CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCC-CCCcEEEcCCCccccc
Q psy12423 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSL 160 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~-~~L~~L~l~~n~l~~~ 160 (567)
.+|+.|+|++|++...+. .-..+|+.|++++|+++.++-.-.++|+.|++++|+|+.++..+ .+|+.|++++|.++.+
T Consensus 241 ~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 241 DTIQEMELSINRITELPE-RLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTAL 319 (754)
T ss_pred ccccEEECcCCccCcCCh-hHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccC
Confidence 467788888887775441 11246788888888877765433457888888888877766433 3577777888877765
Q ss_pred cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423 161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240 (567)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 240 (567)
+. ..+++|+.|++++|.++.+|..+. ++|+.|++++|+|+.+|..+ +++|+.|+|++|+|+.+|..+. ..|
T Consensus 320 P~-~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 320 PE-TLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL----PPTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred Cc-cccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh----cCCcCEEECCCCcCCCCCHhHH--HHH
Confidence 43 235678888888888877776553 67888888888887777654 4578888888888887776553 367
Q ss_pred cEEEccCCCCCCCchhh---hcCCCCCcEEEccCCcCC
Q psy12423 241 KYLFLQSNSINILPQLF---LQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~---l~~l~~L~~L~Ls~N~l~ 275 (567)
+.|++++|+|+.+|..+ +..++.+..|++.+|+|+
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77888888887776542 334567778888888776
No 18
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.86 E-value=1.1e-20 Score=203.40 Aligned_cols=167 Identities=17% Similarity=0.292 Sum_probs=124.9
Q ss_pred CcceeeccCCCCch---h-hhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhc------ccccCceeEEEEee
Q psy12423 301 DALIGIFDSGDNGD---I-ASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSL------HRYSLSATLCHLSL 370 (567)
Q Consensus 301 ~~~~~~~dg~~~~~---i-s~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~------~~~~~st~~~~~~~ 370 (567)
..++.++||++|.. + +......++..+.+.........+++..++..+|..+.... ...+++||++.+.+
T Consensus 414 ~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI 493 (645)
T PRK14559 414 RGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALV 493 (645)
T ss_pred ceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEE
Confidence 45788999987654 3 33555666666554322111236778999999999886532 12246666666666
Q ss_pred cCccceEEEEEEEecCceEEEE-eCCeeeeCCCCCC-----------------------CCCCCCCCCCCCCccCCCceE
Q psy12423 371 HPVTHRYMLHIASVGEAKAILC-RQAGSLTFTHAPT-----------------------LSPPVPPQGSCPLSFPDPHVT 426 (567)
Q Consensus 371 ~~~~~~~~l~~a~~Gdsr~~l~-r~~~~~~lt~dh~-----------------------~~r~~g~~~~~~~~~~~p~v~ 426 (567)
... .+++||+||||+|++ |+|+.++||+||+ ++|++|+... ...+|++.
T Consensus 494 ~~~----~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~~~a~~~p~~~~LTrALG~~~~---~~l~Pdi~ 566 (645)
T PRK14559 494 QDT----QVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEPQIAYARPDAYQLTQALGPRDN---SAIQPDIQ 566 (645)
T ss_pred ECC----EEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCHHHHhcCcccceeeeccCCCCC---CcccceEE
Confidence 655 899999999999988 5678999999998 4567775432 23579999
Q ss_pred EEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423 427 EVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475 (567)
Q Consensus 427 ~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~ 475 (567)
.+.+.++ ++||||||||| ++.++|++|++.|+.+|++||||||||+++
T Consensus 567 ~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 567 FLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred EEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 9999875 67779999999 345689999999999999999999999998
No 19
>KOG0472|consensus
Probab=99.85 E-value=4e-24 Score=208.74 Aligned_cols=261 Identities=26% Similarity=0.347 Sum_probs=170.3
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.|.+++|.+..+.+.+.++..|.+|++.+|++..+|+.+.. +..+..+ +...+.+...+.....
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~-l~~l~~l-------------~vs~n~ls~lp~~i~s 112 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGE-LEALKSL-------------NVSHNKLSELPEQIGS 112 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHH-HHHHHHh-------------hcccchHhhccHHHhh
Confidence 4568899999999888899999999999999999999998864 2222222 2233333333444455
Q ss_pred CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec---CCCCCcEEEcCC
Q psy12423 81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGN 154 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~ 154 (567)
+.+|..|++++|.+.... .++.+-.|+.|+..+|++..++ +..+.+|..|++.+|++..++. +++.|++|++..
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 566666666666666544 5556666666666666666653 4556666666666666666552 356666666666
Q ss_pred CccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423 155 NKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233 (567)
Q Consensus 155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 233 (567)
|-++.+++... +.+|.-|+|..|+|..+| .|.++..|++|+++.|.|..+|...... +++|..|||..|+++++|..
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~-L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKH-LNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcc-cccceeeeccccccccCchH
Confidence 66666665544 666666666666666666 4666666666666666666666666544 66666666666666666666
Q ss_pred hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
+.-+++|..||+++|.|+.+|... +++ .|+.|-+.+|++.+|-.
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred HHHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCchHHHHH
Confidence 666666666666666666666653 555 66666666666654443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=5.6e-21 Score=211.15 Aligned_cols=223 Identities=25% Similarity=0.336 Sum_probs=178.5
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.|+|++|+|+.+|..+. ++|++|+|++|+|+++|..++..|+.|... .+....++ .. .
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls-------------~N~L~~LP---~~--l 260 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELS-------------INRITELP---ER--L 260 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECc-------------CCccCcCC---hh--H
Confidence 5789999999999997654 589999999999999998776655554432 22222222 11 2
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-CCCCCcEEEcCCCcccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-NGSSLISVIAGNNKLQS 159 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-~~~~L~~L~l~~n~l~~ 159 (567)
..+|+.|++++|+++..+. .-.++|+.|++++|+++.++..-..+|+.|++++|.++.++. ..++|+.|++++|.++.
T Consensus 261 ~s~L~~L~Ls~N~L~~LP~-~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 261 PSALQSLDLFHNKISCLPE-NLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339 (754)
T ss_pred hCCCCEEECcCCccCcccc-ccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence 3489999999999986542 113589999999999998875445689999999999998764 34689999999999998
Q ss_pred ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh----h
Q psy12423 160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI----R 235 (567)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~ 235 (567)
++. .++++|+.|++++|+|+.+|..+ .++|+.|+|++|.|+.+|..+. ..|+.|++++|+|+.+|..+ .
T Consensus 340 LP~-~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~----~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 340 LPA-SLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP----AALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred CCh-hhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH----HHHHHHhhccCCcccCchhHHHHhh
Confidence 654 34689999999999999998765 3689999999999999998763 47999999999999988654 4
Q ss_pred CCCCCcEEEccCCCCC
Q psy12423 236 QIASLKYLFLQSNSIN 251 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~ 251 (567)
.++.+..|+|.+|.|+
T Consensus 413 ~~~~l~~L~L~~Npls 428 (754)
T PRK15370 413 EGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCCccEEEeeCCCcc
Confidence 4588999999999987
No 21
>KOG0700|consensus
Probab=99.84 E-value=7.3e-21 Score=187.66 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=110.0
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhh---------------------------------h-hhhhhHHHHHHHH
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT---------------------------------V-KETASDYMKYTML 346 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~---------------------------------l-~~~~~~~l~~a~l 346 (567)
--|+++||||+|++.+.++.+++-..+..+-. . .....++|..+|.
T Consensus 99 ~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~ 178 (390)
T KOG0700|consen 99 WLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFE 178 (390)
T ss_pred eEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHH
Confidence 34789999999999999999977654441100 0 3445889999999
Q ss_pred HHHHHHhhhcc--------cccCceeEEEEeecCccceEEEEEEEecCceEEEEe---CC---eeeeCCCCCC-------
Q psy12423 347 TAHREIKDSLH--------RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR---QA---GSLTFTHAPT------- 405 (567)
Q Consensus 347 ~~n~~i~~~~~--------~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r---~~---~~~~lt~dh~------- 405 (567)
.+++++..... -..+++++|+...... .+|+||+|||||||++ .| .++|||.||+
T Consensus 179 ~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~----~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev 254 (390)
T KOG0700|consen 179 ATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGG----DLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEV 254 (390)
T ss_pred HHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCC----eEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHH
Confidence 99987754332 1224455555555554 8999999999999976 33 3689999999
Q ss_pred --------------------------CCCCCCCCCC---------------------CCCccCCCceEEEEecCCCeEEE
Q psy12423 406 --------------------------LSPPVPPQGS---------------------CPLSFPDPHVTEVMLHENDHFLI 438 (567)
Q Consensus 406 --------------------------~~r~~g~~~~---------------------~~~~~~~p~v~~~~l~~~d~~li 438 (567)
++||+||..+ +||++++|+|++++|++.|+|||
T Consensus 255 ~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLI 334 (390)
T KOG0700|consen 255 RRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLI 334 (390)
T ss_pred HHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEE
Confidence 7899998865 89999999999999999999999
Q ss_pred EEcCCCC
Q psy12423 439 LANKSVS 445 (567)
Q Consensus 439 l~sDGl~ 445 (567)
+||||||
T Consensus 335 lASDGLw 341 (390)
T KOG0700|consen 335 LASDGLW 341 (390)
T ss_pred Eeccchh
Confidence 9999999
No 22
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.82 E-value=5.2e-19 Score=174.42 Aligned_cols=169 Identities=33% Similarity=0.466 Sum_probs=137.7
Q ss_pred CCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhh----hhhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEEeec
Q psy12423 300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERTVK----ETASDYMKYTMLTAHREIKDSLHR----YSLSATLCHLSLH 371 (567)
Q Consensus 300 ~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~----~~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~~~~ 371 (567)
...++.++||+++...+......+...+.+..... ..+.++|..++..++..+...... ..++++++.+...
T Consensus 33 ~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~ 112 (255)
T smart00332 33 SGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALIS 112 (255)
T ss_pred CeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEE
Confidence 35688999999988888888888887776654322 246788999999998877665332 2355666656666
Q ss_pred CccceEEEEEEEecCceEEEEeCCeeeeCCCCCCC---------------------------CCCCCCCCCCCCccCCCc
Q psy12423 372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTL---------------------------SPPVPPQGSCPLSFPDPH 424 (567)
Q Consensus 372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~---------------------------~r~~g~~~~~~~~~~~p~ 424 (567)
.. .++++|+||||+|++|+++..++|.||+. +|++|....++.+.++|+
T Consensus 113 ~~----~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~ 188 (255)
T smart00332 113 GN----KLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPD 188 (255)
T ss_pred CC----EEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhcCCeEeeeE
Confidence 55 89999999999999999999999999996 788888777788899999
Q ss_pred eEEEEecCCCeEEEEEcCCCC----------------C---HHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy12423 425 VTEVMLHENDHFLILANKSVS----------------E---PVLAAKRIQDLAQSYGSEDNLSVLVL 472 (567)
Q Consensus 425 v~~~~l~~~d~~lil~sDGl~----------------~---~~~~a~~l~~~a~~~g~~dnit~~vv 472 (567)
+...++...+++||||||||| . +.++|++|++.|..+|+.||+||+||
T Consensus 189 ~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 189 VTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred EEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 999997445678889999999 2 78899999999999999999999985
No 23
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.80 E-value=2.5e-18 Score=169.25 Aligned_cols=170 Identities=28% Similarity=0.377 Sum_probs=133.6
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeec
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-----KETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLH 371 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-----~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~ 371 (567)
..++.+.||+++...+......+...+.+.... ...+.+++..++..+++.+..... ...++++++.+...
T Consensus 30 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~ 109 (254)
T cd00143 30 GGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIR 109 (254)
T ss_pred cEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEE
Confidence 468899999998877777777777666554432 234577899999999998866542 23445555555555
Q ss_pred CccceEEEEEEEecCceEEEEeCCeeeeCCCCCCC---------------------------CCCCCCCCCCCCccCCCc
Q psy12423 372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTL---------------------------SPPVPPQGSCPLSFPDPH 424 (567)
Q Consensus 372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~---------------------------~r~~g~~~~~~~~~~~p~ 424 (567)
.. .++++|+||||+|++|++..+++|.||+. +|++|....++.+.++|+
T Consensus 110 ~~----~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~ 185 (254)
T cd00143 110 GN----KLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPD 185 (254)
T ss_pred CC----EEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccccCCEEcCCe
Confidence 54 89999999999999999999999999973 455676655556788999
Q ss_pred eEEEEecCCCeEEEEEcCCCC---------------C----HHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423 425 VTEVMLHENDHFLILANKSVS---------------E----PVLAAKRIQDLAQSYGSEDNLSVLVLRF 474 (567)
Q Consensus 425 v~~~~l~~~d~~lil~sDGl~---------------~----~~~~a~~l~~~a~~~g~~dnit~~vv~~ 474 (567)
+....+.+.+++++||||||| . +.++|++|++.|..+|+.||+||+|+++
T Consensus 186 ~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 186 VTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred EEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 999999555677889999999 2 7789999999999999999999999975
No 24
>KOG0618|consensus
Probab=99.79 E-value=2.8e-21 Score=206.36 Aligned_cols=254 Identities=27% Similarity=0.350 Sum_probs=127.3
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|++++++.|+++.+|++++.+.+|+.|+..+|.++.+|..++. ++.|+.+ ....+.+...+.....
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l-------------~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISR-ITSLVSL-------------SAAYNELEYIPPFLEG 308 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhh-hhhHHHH-------------HhhhhhhhhCCCcccc
Confidence 4677777777777777777777777777777777777766653 3333322 1122222333333444
Q ss_pred CCCccEEEecCCCCCCcc--ccCCCC-CccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423 81 KGELTSVNLRSNQLKGTI--ILGNYG-NLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISV 150 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~--~l~~l~-~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L 150 (567)
+..|++|+|..|+|...+ .+..+. .|..|+.+.|.+...+ -..++.|+.|.+.+|.+++-. .++.+|+.|
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 455555555555555433 122222 2444444444444332 122344555555555554321 234555555
Q ss_pred EcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423 151 IAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 151 ~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
++++|++..++...+ +..|++|+||+|+++.+|..+..+..|++|...+|+|..+|. +.. ++.|+.+|+|.|+|+
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe-~~~--l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE-LAQ--LPQLKVLDLSCNNLS 465 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh-hhh--cCcceEEecccchhh
Confidence 555555555544444 445555555555555555555555555555555555555552 222 455555555555555
Q ss_pred C--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCC
Q psy12423 229 S--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272 (567)
Q Consensus 229 ~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N 272 (567)
. +|..... ++|++|||++|.-..+....|..++++..+++.-|
T Consensus 466 ~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 466 EVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 4 2221111 45555555555433333333334444444444433
No 25
>KOG0699|consensus
Probab=99.78 E-value=6e-19 Score=169.11 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=102.6
Q ss_pred CceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------------------------CCCCCCC
Q psy12423 361 LSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT----------------------------LSPPVPP 412 (567)
Q Consensus 361 ~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----------------------------~~r~~g~ 412 (567)
+++++|+..+... .+++||.||||+|++|.|+++-++.||+ ++|++|+
T Consensus 330 SGtTAvVcLv~g~----~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GD 405 (542)
T KOG0699|consen 330 SGTTAVVCLVGGD----KLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGD 405 (542)
T ss_pred CCceEEEEEecCc----eEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhh
Confidence 4455554444444 8999999999999999999999999999 6899999
Q ss_pred CCC---------CCCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcC-
Q psy12423 413 QGS---------CPLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYG- 462 (567)
Q Consensus 413 ~~~---------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g- 462 (567)
+.+ .+.+++-|||....|++.|+|+||||||+| ....+++.|+|.+++-.
T Consensus 406 HaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T 485 (542)
T KOG0699|consen 406 HAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPST 485 (542)
T ss_pred hhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCC
Confidence 987 456888999999999999999999999999 45578889999998753
Q ss_pred -----CCCCcEEEEEEeC----CCCcChhhHHHHHhhh
Q psy12423 463 -----SEDNLSVLVLRFQ----GSEFDSRTRDAKLSSM 491 (567)
Q Consensus 463 -----~~dnit~~vv~~~----~~~~~~~~~~~~~~~~ 491 (567)
+-||+|||++.|+ .-+.+...+.+.++..
T Consensus 486 ~GDGTGCDNMT~ii~~Fkrk~~elqpnq~e~kldq~~s 523 (542)
T KOG0699|consen 486 DGDGTGCDNMTVIITTFKRKSKELQPNQTEDKLDQSAS 523 (542)
T ss_pred CCCCcCCCcceEEEEEeccchhhcCCcchhhHHHHHHH
Confidence 3499999999999 2345555555555543
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.4e-17 Score=195.98 Aligned_cols=270 Identities=20% Similarity=0.219 Sum_probs=167.2
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccC-CcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDED-GIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 79 (567)
|+.|.+.++.++.+|..| ...+|+.|+|++|++..++..+ ..++.|+.+ +.... .+...+ .+.
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L-------------~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNI-------------DLRGSKNLKEIP-DLS 654 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEE-------------ECCCCCCcCcCC-ccc
Confidence 355666666666666555 3456666666666666665543 234444433 11100 011111 234
Q ss_pred CCCCccEEEecCCCCC-Ccc-ccCCCCCccEEEccCC-CCCCCCC-cccccCcEEEcccCc-ccceecCCCCCcEEEcCC
Q psy12423 80 VKGELTSVNLRSNQLK-GTI-ILGNYGNLTTLDVSEN-SIESLDL-GALNRLESIKCSRNQ-LKTLVLNGSSLISVIAGN 154 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~L~~n-~l~~~~~-~~l~~L~~L~ls~n~-l~~l~~~~~~L~~L~l~~ 154 (567)
.+++|++|+|++|... ..+ .+..+++|+.|++++| .++.++. ..+++|+.|++++|. +..++....+|+.|++++
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 4566666666665432 222 4556666666666664 3444432 245666666666653 223333334556666666
Q ss_pred CccccccCCC-------------------------------CCCcccEEecccCC-CCCcccccCCCcCCcEEECcCC-C
Q psy12423 155 NKLQSLIVSP-------------------------------RPARLQHLDISYNE-LESLPDWIDTCPELETIFASHN-R 201 (567)
Q Consensus 155 n~l~~~~~~~-------------------------------~~~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~N-~ 201 (567)
|.+..++... .+++|+.|+|++|. +..+|.+++.+++|+.|+|++| .
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 6555443211 13578888888874 4478888888999999999886 5
Q ss_pred CCCCChhhhhccCCCccEEECCCC-CCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC-CcCCCCCC
Q psy12423 202 ITQLPSQFFCRELGKLHTLQLSFN-RLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK-NCLKMLPS 279 (567)
Q Consensus 202 l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~-N~l~~ip~ 279 (567)
+..+|... . +++|+.|+|++| .+..+|.. .++|+.|+|++|.|+.+|..+ ..+++|+.|+|++ |+++.+|.
T Consensus 815 L~~LP~~~--~-L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 815 LETLPTGI--N-LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cCeeCCCC--C-ccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCccCc
Confidence 77887765 2 788999999886 44455543 367889999999999988764 6889999999988 67888887
Q ss_pred CCcCCccceeeccc
Q psy12423 280 LQKGFYLLNISQLR 293 (567)
Q Consensus 280 ~~~~~~~L~~~~l~ 293 (567)
....+..|....+.
T Consensus 888 ~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 888 NISKLKHLETVDFS 901 (1153)
T ss_pred ccccccCCCeeecC
Confidence 77777666665554
No 27
>KOG4237|consensus
Probab=99.76 E-value=1.5e-20 Score=183.66 Aligned_cols=290 Identities=18% Similarity=0.216 Sum_probs=160.3
Q ss_pred cEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 2 QEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
.+|+|..|.|+.||+ +|+.+++|+.|||++|.|+.|.+..|.+|..|..+.-. .++..+.++ ...+..
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly---------g~NkI~~l~--k~~F~g 138 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY---------GNNKITDLP--KGAFGG 138 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh---------cCCchhhhh--hhHhhh
Confidence 467888888888875 68888889999999998888888888877766554100 001111111 133344
Q ss_pred CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEE--cC
Q psy12423 81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVI--AG 153 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~--l~ 153 (567)
+..|+.|.+.-|++.-.. .|..+++|..|.+.+|.+..+. +..+..++.+.+..|.+-. ..+|+.+- +.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a 214 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLA 214 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHh
Confidence 444555555444444322 3444555555555555544432 3333444444444443210 01111110 00
Q ss_pred CCccccccCCCCCCcccEEecccCCCCCccc-ccCC-CcCCc-EEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423 154 NNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDT-CPELE-TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230 (567)
Q Consensus 154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~-l~~L~-~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l 230 (567)
.+.+. ........-..+.+.++..++. .|.. +..+. .+....+....-|...|.. +++|+.|+|++|+|+.+
T Consensus 215 ~~~ie----tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 215 MNPIE----TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRI 289 (498)
T ss_pred hchhh----cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchh
Confidence 00000 0001112222233334443321 1111 11111 1222223344556666665 88888888888888887
Q ss_pred ch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccC---Cccee
Q psy12423 231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNS---DALIG 305 (567)
Q Consensus 231 p~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~---~~~~~ 305 (567)
.+ +|.+...+++|.|..|+|..+...+|.++..|+.|+|.+|+|+.+-+..+ .+.+|..+.+-.|+|+|. .++.+
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence 54 78888888999999999988888888899999999999999987765544 344444444445555544 44555
Q ss_pred eccCCC
Q psy12423 306 IFDSGD 311 (567)
Q Consensus 306 ~~dg~~ 311 (567)
|+.+..
T Consensus 370 Wlr~~~ 375 (498)
T KOG4237|consen 370 WLRKKS 375 (498)
T ss_pred HHhhCC
Confidence 666544
No 28
>KOG1323|consensus
Probab=99.75 E-value=3.5e-17 Score=155.53 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhhhcc---cccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------
Q psy12423 338 SDYMKYTMLTAHREIKDSLH---RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------- 405 (567)
Q Consensus 338 ~~~l~~a~l~~n~~i~~~~~---~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------- 405 (567)
..++..+|..+++.+....+ ..|++++.++++... ++|+||.|||||+++|+|+.++|+.+.+
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llG-----KlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ 295 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLG-----KLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQ 295 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeecc-----ceEEccCCCceEEEEecCCeeecccccCcHHHHHHHH
Confidence 67899999999998877654 234445555555555 8999999999999999999999999887
Q ss_pred -----------------------------------------------------------------------CCCCCCCCC
Q psy12423 406 -----------------------------------------------------------------------LSPPVPPQG 414 (567)
Q Consensus 406 -----------------------------------------------------------------------~~r~~g~~~ 414 (567)
++|.+||..
T Consensus 296 ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~ 375 (493)
T KOG1323|consen 296 ELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHH 375 (493)
T ss_pred HHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcce
Confidence 788899886
Q ss_pred C---------CCCccCCCceEEEEec----CCCeEEEEEcCCCC----------------------CHH---HHHHHHHH
Q psy12423 415 S---------CPLSFPDPHVTEVMLH----ENDHFLILANKSVS----------------------EPV---LAAKRIQD 456 (567)
Q Consensus 415 ~---------~~~~~~~p~v~~~~l~----~~d~~lil~sDGl~----------------------~~~---~~a~~l~~ 456 (567)
+ +|++.+.|+|+.+.++ ..|+.+|+|||||| ||. .+|+.|+.
T Consensus 376 Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva 455 (493)
T KOG1323|consen 376 LKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVA 455 (493)
T ss_pred eeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Confidence 5 8999999999999998 35679999999999 332 57888888
Q ss_pred HHHH-------------cCCCCCcEEEEEEeC
Q psy12423 457 LAQS-------------YGSEDNLSVLVLRFQ 475 (567)
Q Consensus 457 ~a~~-------------~g~~dnit~~vv~~~ 475 (567)
.|.. .|+.|+|||.||.+.
T Consensus 456 ~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 456 AARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred HhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 8765 367899999999887
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.7e-16 Score=186.85 Aligned_cols=251 Identities=16% Similarity=0.204 Sum_probs=176.4
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCC-CCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNR-ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.+..+|..+..+++|+.|+|++|. +..+|.. ..+++|+.+ .+. +...+...+..+.
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l--s~l~~Le~L----------~L~--~c~~L~~lp~si~ 678 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL--SMATNLETL----------KLS--DCSSLVELPSSIQ 678 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCcc--ccCCcccEE----------Eec--CCCCccccchhhh
Confidence 678999999999999889999999999998865 6677752 244555443 000 1112233344556
Q ss_pred CCCCccEEEecCCC-CCCccccCCCCCccEEEccCCCCC-CCCCcccccCcEEEcccCcccceec---------------
Q psy12423 80 VKGELTSVNLRSNQ-LKGTIILGNYGNLTTLDVSENSIE-SLDLGALNRLESIKCSRNQLKTLVL--------------- 142 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~L~~L~ls~n~l~~l~~--------------- 142 (567)
.+++|+.|++++|. +...+...++++|+.|++++|... .++ ....+|+.|++++|.+..++.
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCcccccccccccccccccccccc
Confidence 66777777777753 333332225666777777666422 221 223455666666665544331
Q ss_pred ------------------CCCCCcEEEcCCCccccccCCCC--CCcccEEecccC-CCCCcccccCCCcCCcEEECcCCC
Q psy12423 143 ------------------NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYN-ELESLPDWIDTCPELETIFASHNR 201 (567)
Q Consensus 143 ------------------~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~N~ 201 (567)
..++|+.|++++|......+..+ +++|+.|+|++| .++.+|..+ .+++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 12477888888876444334434 889999999987 577888765 78999999999974
Q ss_pred -CCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC-CCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423 202 -ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS-NSINILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 202 -l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
+..+|.. +.+|+.|+|++|.|+.+|.++..+++|+.|+|++ +.++.+|... ..+++|+.|++++|.
T Consensus 837 ~L~~~p~~-----~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 837 RLRTFPDI-----STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccc-----ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCCc
Confidence 5566542 5689999999999999999999999999999999 4788888765 688999999999984
No 30
>KOG0617|consensus
Probab=99.63 E-value=5.6e-18 Score=148.00 Aligned_cols=164 Identities=30% Similarity=0.445 Sum_probs=134.9
Q ss_pred cCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccC
Q psy12423 100 LGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177 (567)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n 177 (567)
+-++.+++.|.|++|+++.++ +..+.+|+.|++++|++++++...++ ++.|+.|+++-|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~iss-------------------l~klr~lnvgmn 89 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISS-------------------LPKLRILNVGMN 89 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhh-------------------chhhhheecchh
Confidence 344556667777777777654 55566666666666666555533222 568889999999
Q ss_pred CCCCcccccCCCcCCcEEECcCCCCC--CCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCch
Q psy12423 178 ELESLPDWIDTCPELETIFASHNRIT--QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ 255 (567)
Q Consensus 178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~ 255 (567)
++..+|..|+.++.|+.|+|.+|++. .+|..+|. +..|+.|.|+.|.+.-+|..++.+++|+.|.+..|.+-++|.
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~--m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccCCcchhH--HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 99999999999999999999999998 78888886 889999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcEEEccCCcCCCCCCCCcCCc
Q psy12423 256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285 (567)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~ 285 (567)
++ +.+..|++|++.+|+++.+|++...+.
T Consensus 168 ei-g~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 168 EI-GDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HH-HHHHHHHHHhcccceeeecChhhhhhh
Confidence 86 789999999999999999998766543
No 31
>KOG4237|consensus
Probab=99.63 E-value=1.8e-17 Score=162.33 Aligned_cols=290 Identities=19% Similarity=0.177 Sum_probs=209.4
Q ss_pred EccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCc
Q psy12423 5 RVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGEL 84 (567)
Q Consensus 5 ~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L 84 (567)
+-++-.++++|..+. +.-..++|..|.|+.||+..|..+ ++|
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l------------------------------------~~L 93 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTL------------------------------------HRL 93 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccch------------------------------------hhh
Confidence 445557778876444 367788999999999998887533 478
Q ss_pred cEEEecCCCCCCcc--ccCCCCCccEEEccC-CCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEEEcCC
Q psy12423 85 TSVNLRSNQLKGTI--ILGNYGNLTTLDVSE-NSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGN 154 (567)
Q Consensus 85 ~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~ 154 (567)
+.|||++|+|+.+. .|.++++|..|-+.+ |+|+.++ |+.+..|+.|.+.-|++.-+. ..++++..|.+..
T Consensus 94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 88999999998765 788888888776665 8999885 777778888888888877554 4567777888888
Q ss_pred CccccccCCCC--CCcccEEecccCCCC-------------CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccE
Q psy12423 155 NKLQSLIVSPR--PARLQHLDISYNELE-------------SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219 (567)
Q Consensus 155 n~l~~~~~~~~--~~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~ 219 (567)
|.+..+....+ +..++.+.+..|.+- ..|-.+++.....-..+.++++..++..-|...+..+..
T Consensus 174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s 253 (498)
T KOG4237|consen 174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS 253 (498)
T ss_pred hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence 88887777666 677888887777632 123334555566666667777777776655321112221
Q ss_pred EECCCC-CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCc
Q psy12423 220 LQLSFN-RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPG 296 (567)
Q Consensus 220 L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~ 296 (567)
--.+.+ .....|. .|..+++|+.|+|++|.|+.|.+..|.....+++|.|..|+|..+...++ ++..|..+++..|.
T Consensus 254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 112223 3333453 68999999999999999999999999999999999999999998887655 78888888887777
Q ss_pred cccC-Cccee------eccCCCCchhhhHHhhhhHHHHHhhhh
Q psy12423 297 FCNS-DALIG------IFDSGDNGDIASTLVQSIPRILLEERT 332 (567)
Q Consensus 297 ~~~~-~~~~~------~~dg~~~~~is~~l~~~lP~~l~~~~~ 332 (567)
..+. ...|. .+..-.++..+++-..|+-+|+.+...
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~ 376 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV 376 (498)
T ss_pred eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCC
Confidence 6655 22221 222356777788888899999887763
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=7.2e-16 Score=157.13 Aligned_cols=239 Identities=21% Similarity=0.209 Sum_probs=115.4
Q ss_pred EEEccCCCCC--cCCccCCCCCCCCEEeCcCCCCCCCCh-hhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 3 EFRVDRNDLT--EFPGNQDSFPRLKFLSAAQNRISHLPV-FLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 3 ~L~Ls~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
.|+|.++.++ ..+..|..+.+|+.|+++++.++.-.. .+...+ .
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l---------------------------------~ 48 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL---------------------------------R 48 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH---------------------------------h
Confidence 5778888776 344556677789999999988863111 111100 1
Q ss_pred CCCCccEEEecCCCCCC--cc------ccCCCCCccEEEccCCCCCCCC---Cccc---ccCcEEEcccCcccce-----
Q psy12423 80 VKGELTSVNLRSNQLKG--TI------ILGNYGNLTTLDVSENSIESLD---LGAL---NRLESIKCSRNQLKTL----- 140 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~--~~------~l~~l~~L~~L~L~~n~l~~~~---~~~l---~~L~~L~ls~n~l~~l----- 140 (567)
..++|++|+++++.+.. .. .+..+++|+.|++++|.+.... +..+ ++|++|++++|.+...
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 12345555555554441 00 2334455555555555554210 1122 2255555555555421
Q ss_pred ---ecCC-CCCcEEEcCCCccccccCCCC------CCcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCC
Q psy12423 141 ---VLNG-SSLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQL 205 (567)
Q Consensus 141 ---~~~~-~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l 205 (567)
.... ++|+.|++++|.++......+ +.+|++|++++|.++ .++..+..+++|+.|++++|.++..
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 1122 455555555555552211111 345666666666555 1222334445666666666665532
Q ss_pred Chh----hhhccCCCccEEECCCCCCCC--Cchhhh----CCCCCcEEEccCCCCCCCch----hhhcCCCCCcEEEccC
Q psy12423 206 PSQ----FFCRELGKLHTLQLSFNRLTS--LPSLIR----QIASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNISK 271 (567)
Q Consensus 206 ~~~----~~~~~l~~L~~L~Ls~N~l~~--lp~~~~----~l~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls~ 271 (567)
... .+.. +++|++|++++|.++. +..... ..+.|+.|++++|.++.... ..+..+++|+.+++++
T Consensus 209 ~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 209 GASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 211 1111 4556666666666553 111111 13566666666666542111 1223445666666666
Q ss_pred CcCC
Q psy12423 272 NCLK 275 (567)
Q Consensus 272 N~l~ 275 (567)
|.++
T Consensus 288 N~l~ 291 (319)
T cd00116 288 NKFG 291 (319)
T ss_pred CCCc
Confidence 6665
No 33
>KOG0617|consensus
Probab=99.54 E-value=1.4e-16 Score=139.24 Aligned_cols=154 Identities=26% Similarity=0.366 Sum_probs=137.1
Q ss_pred CCCCcEEEcCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423 144 GSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222 (567)
Q Consensus 144 ~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L 222 (567)
+..+..|.+++|+++.+++... +.+|+.|++++|+|+++|..++.++.|+.|+++-|++..+|.++.. ++.|+.|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs--~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS--FPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC--Cchhhhhhc
Confidence 4455666677777777776655 7899999999999999999999999999999999999999998765 999999999
Q ss_pred CCCCCCC--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 223 SFNRLTS--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 223 s~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
.+|++.+ +|..|..++.|+.|+|+.|.+.-+|+++ +++++|+.|.+..|.+-++|.++..+..|+-+++.+|.+.-.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 9999985 8998889999999999999999999987 899999999999999999999999999888888887776654
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.4e-15 Score=153.26 Aligned_cols=244 Identities=23% Similarity=0.260 Sum_probs=175.3
Q ss_pred CcEEEccCCCCC-----cCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc
Q psy12423 1 LQEFRVDRNDLT-----EFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER 75 (567)
Q Consensus 1 L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~ 75 (567)
|++|+++++.++ .++..+...++|++|+++++.+...+..+.. + .
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~----~--------------------------~ 74 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS----L--------------------------L 74 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH----H--------------------------H
Confidence 578999999985 4666778888999999999987754433211 0 0
Q ss_pred CCCCCCCCccEEEecCCCCCCcc--ccCCC---CCccEEEccCCCCCCC-------CCccc-ccCcEEEcccCcccce--
Q psy12423 76 REPEVKGELTSVNLRSNQLKGTI--ILGNY---GNLTTLDVSENSIESL-------DLGAL-NRLESIKCSRNQLKTL-- 140 (567)
Q Consensus 76 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l---~~L~~L~L~~n~l~~~-------~~~~l-~~L~~L~ls~n~l~~l-- 140 (567)
..+..+++|+.|++++|.+.... .+..+ ++|++|++++|.+... .+..+ ++|+.|++++|.++..
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 11223569999999999987432 23333 5599999999998742 24455 8899999999998832
Q ss_pred ------ecCCCCCcEEEcCCCccccccCCCC------CCcccEEecccCCCCC-----cccccCCCcCCcEEECcCCCCC
Q psy12423 141 ------VLNGSSLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELES-----LPDWIDTCPELETIFASHNRIT 203 (567)
Q Consensus 141 ------~~~~~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~N~l~ 203 (567)
...+.+|+.|++++|.+++.....+ .++|++|++++|.++. ++..+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1345789999999999885322211 4589999999999873 3456778899999999999988
Q ss_pred CCChhh-hhc---cCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchh----hhcCC-CCCcEEEc
Q psy12423 204 QLPSQF-FCR---ELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQL----FLQNS-SKLKVLNI 269 (567)
Q Consensus 204 ~l~~~~-~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~----~l~~l-~~L~~L~L 269 (567)
...... ... ..+.|++|++++|.++. +...+..+++|++|++++|.++..+.. .+... +.|++|++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 422211 111 13799999999999973 445567778999999999999955332 23334 78999999
Q ss_pred cCCcC
Q psy12423 270 SKNCL 274 (567)
Q Consensus 270 s~N~l 274 (567)
.+|++
T Consensus 315 ~~~~~ 319 (319)
T cd00116 315 KDDSF 319 (319)
T ss_pred CCCCC
Confidence 98865
No 35
>KOG0532|consensus
Probab=99.33 E-value=6.4e-14 Score=143.39 Aligned_cols=189 Identities=26% Similarity=0.332 Sum_probs=156.4
Q ss_pred CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCc
Q psy12423 82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNK 156 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~ 156 (567)
..-...||+.|++...+ .+..+..|+.+.|+.|.+..++ +..+..|++|+|+.|++..++.. ..-|+.|.+++|+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK 154 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc
Confidence 34556789999988776 6677778999999999988874 77888999999999999988754 3467889999999
Q ss_pred cccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423 157 LQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235 (567)
Q Consensus 157 l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 235 (567)
++.++...- ...|..||.+.|.+..+|..++.+.+|+.|++..|.+..+|.++.. + .|..||+|+|++..||..|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~--L-pLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS--L-PLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC--C-ceeeeecccCceeecchhhh
Confidence 988877665 7788899999999999998899999999999999999999988763 3 68899999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCchhhh--cCCCCCcEEEccCCc
Q psy12423 236 QIASLKYLFLQSNSINILPQLFL--QNSSKLKVLNISKNC 273 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~l--~~l~~L~~L~Ls~N~ 273 (567)
.|+.|++|-|.+|.++.-|..+. +...-.++|+..-++
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999998888653 334456777777773
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=2.2e-12 Score=135.60 Aligned_cols=193 Identities=31% Similarity=0.394 Sum_probs=158.4
Q ss_pred EEEecCCCCC-CccccCCCCCccEEEccCCCCCCCC--Ccccc-cCcEEEcccCcccce---ecCCCCCcEEEcCCCccc
Q psy12423 86 SVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESLD--LGALN-RLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 86 ~L~Ls~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~-~L~~L~ls~n~l~~l---~~~~~~L~~L~l~~n~l~ 158 (567)
.+++..|.+. ....+..++.++.|++.+|.++.++ ...+. +|+.|+++.|++..+ ...++.|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5788888873 3336666788999999999999875 34443 899999999999887 256889999999999999
Q ss_pred cccCCC-CCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423 159 SLIVSP-RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237 (567)
Q Consensus 159 ~~~~~~-~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 237 (567)
.++... .++.|+.|++++|++..+|........|++|.+++|.+..++..+.. +.++..|.+.+|++..++..+..+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSN--LKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhh--cccccccccCCceeeeccchhccc
Confidence 988877 47889999999999999988766677799999999976666665554 778888889999988888888889
Q ss_pred CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 282 (567)
++++.|++++|.++.++. +..+.+|+.|++++|.+..++....
T Consensus 255 ~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 255 SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 999999999999999988 5788999999999999987765433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=3.3e-12 Score=116.61 Aligned_cols=83 Identities=29% Similarity=0.435 Sum_probs=23.2
Q ss_pred CcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEEE
Q psy12423 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYLF 244 (567)
Q Consensus 167 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~ 244 (567)
.+|+.|+|++|.|+.++. +..++.|++|++++|+|+.++..+... +++|++|+|++|+|..+.. .+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~-lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKN-LPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH--TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHh-CCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 445555555555554432 444455555555555555544333222 4455555555555444322 234444455555
Q ss_pred ccCCCCC
Q psy12423 245 LQSNSIN 251 (567)
Q Consensus 245 Ls~N~l~ 251 (567)
|.+|.++
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 5555444
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=4.2e-12 Score=133.52 Aligned_cols=173 Identities=32% Similarity=0.361 Sum_probs=144.4
Q ss_pred CCccEEEecCCCCCCccccCCCC--CccEEEccCCCCCCC--CCcccccCcEEEcccCcccceec---CCCCCcEEEcCC
Q psy12423 82 GELTSVNLRSNQLKGTIILGNYG--NLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGN 154 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~L~~n~l~~~--~~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~ 154 (567)
+.++.|++.+|.++.......+. +|+.|++++|.+..+ ++..+++|+.|+++.|++..++. ..+.|..|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 46888889999888877433333 899999999999887 68889999999999999988875 678899999999
Q ss_pred CccccccCCC-CCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423 155 NKLQSLIVSP-RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233 (567)
Q Consensus 155 n~l~~~~~~~-~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 233 (567)
|++..++... .+..|++|.+++|.+..++..+..+.++..|.+.+|++..++..... +++++.|++++|.++.++.
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc--ccccceecccccccccccc-
Confidence 9999888874 46679999999997777777788889999999999998876655543 7789999999999999887
Q ss_pred hhCCCCCcEEEccCCCCCCCchhh
Q psy12423 234 IRQIASLKYLFLQSNSINILPQLF 257 (567)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~l~~~~ 257 (567)
+..+.+|+.|++++|.+..+++..
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccCccCEEeccCccccccchhh
Confidence 888899999999999988776654
No 39
>KOG1909|consensus
Probab=99.26 E-value=5.9e-13 Score=129.30 Aligned_cols=191 Identities=21% Similarity=0.228 Sum_probs=120.4
Q ss_pred CCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCCCcccc-cCcEEEcccCcccceecCCCCCcEEE
Q psy12423 79 EVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLDLGALN-RLESIKCSRNQLKTLVLNGSSLISVI 151 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~L~~L~ls~n~l~~l~~~~~~L~~L~ 151 (567)
..+++|++|+||.|-+.... .+..+..|++|.|.+|.+....-+.+. .|..|. . .......+.|+.+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~---~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--V---NKKAASKPKLRVFI 163 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--H---HhccCCCcceEEEE
Confidence 34557777777777665422 245566777777777766543211100 011111 0 01123346677777
Q ss_pred cCCCccccccCCCC------CCcccEEecccCCCC--C---cccccCCCcCCcEEECcCCCCCCCChh----hhhccCCC
Q psy12423 152 AGNNKLQSLIVSPR------PARLQHLDISYNELE--S---LPDWIDTCPELETIFASHNRITQLPSQ----FFCRELGK 216 (567)
Q Consensus 152 l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~--~---lp~~l~~l~~L~~L~Ls~N~l~~l~~~----~~~~~l~~ 216 (567)
+.+|++..-+...+ .+.|+.+.++.|.|. . +...+..+++|+.|||..|-++.-... .+.. +++
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~ 242 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPH 242 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cch
Confidence 77777766554433 567888888888776 1 234678889999999999988732221 1222 778
Q ss_pred ccEEECCCCCCCC-----Cchhh-hCCCCCcEEEccCCCCCCC----chhhhcCCCCCcEEEccCCcCC
Q psy12423 217 LHTLQLSFNRLTS-----LPSLI-RQIASLKYLFLQSNSINIL----PQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 217 L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~l----~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
|++|++++|.+.. +...+ ...++|++|.|.+|.|+.- ........+.|..|+|++|.+.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999999998875 22222 4578999999999999832 1122345789999999999985
No 40
>KOG0532|consensus
Probab=99.24 E-value=5.1e-13 Score=136.88 Aligned_cols=175 Identities=30% Similarity=0.340 Sum_probs=133.5
Q ss_pred CCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec---CCCCCcEEEcCCCccccccCCCCCCcccEEeccc
Q psy12423 102 NYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~ 176 (567)
.+..-...||+.|++..++ ...|..|+.+.+..|.+..++. ++..|..++++.|++..++...+.--|+.|-+++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN 152 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN 152 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec
Confidence 3445567788888888875 5667788888888888877763 4566677788888887777766655678888888
Q ss_pred CCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchh
Q psy12423 177 NELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL 256 (567)
Q Consensus 177 n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~ 256 (567)
|+++.+|+.++....|..|+.+.|.+..+|..+.. +.+|+.|.+..|++..+|..+..+ .|..||++.|+|..||..
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~--l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY--LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhh--HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 88888887777777888888888888888877765 778888888888888888777644 577888888888888876
Q ss_pred hhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 257 FLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
+ .++..|++|-|.+|+|++-|..
T Consensus 230 f-r~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 230 F-RKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred h-hhhhhheeeeeccCCCCCChHH
Confidence 4 6788888888888888876654
No 41
>KOG1259|consensus
Probab=99.22 E-value=2.4e-12 Score=122.36 Aligned_cols=194 Identities=21% Similarity=0.212 Sum_probs=127.7
Q ss_pred CCccEEEecCCCCCCccc-cCCCCCccEEEccCCCCCCCC-CcccccCcEEEccc-----CcccceecCCCCCcEEEcCC
Q psy12423 82 GELTSVNLRSNQLKGTII-LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSR-----NQLKTLVLNGSSLISVIAGN 154 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~-----n~l~~l~~~~~~L~~L~l~~ 154 (567)
.+|+.+.++.+.-..+.. ...-|.|+++.+.+..+...+ +--...+..+..+. -........+..|+++++++
T Consensus 214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~ 293 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG 293 (490)
T ss_pred hhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc
Confidence 466666666664443321 112356777766665544322 11111111111110 01112223456777778888
Q ss_pred CccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423 155 NKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233 (567)
Q Consensus 155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 233 (567)
|.|+.+....- .+.++.|++|+|.|..+.. +..+++|+.|||++|.++.+..+-.. +.+++.|.|+.|.|..+..
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K--LGNIKtL~La~N~iE~LSG- 369 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK--LGNIKTLKLAQNKIETLSG- 369 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh--hcCEeeeehhhhhHhhhhh-
Confidence 87777665544 7788888888888887755 77888888888888888877665544 7888889998888877633
Q ss_pred hhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 234 IRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
+..+-+|..||+++|+|..+.. ..++++|.|+.+.|.+|++..+|+
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 5677788899999999886554 235789999999999999998885
No 42
>KOG3207|consensus
Probab=99.20 E-value=2e-12 Score=128.86 Aligned_cols=174 Identities=25% Similarity=0.313 Sum_probs=106.2
Q ss_pred CCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccce------ecCCCCCcEEEcCCCccccccCCCC---CCc
Q psy12423 102 NYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTL------VLNGSSLISVIAGNNKLQSLIVSPR---PAR 168 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l------~~~~~~L~~L~l~~n~l~~~~~~~~---~~~ 168 (567)
++.+|+.+.|.++.+.... ...|++++.|+|+.|-+... ...+++|+.|+++.|++........ +++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3445555555555544432 23455555555555544432 2345566666666665544333322 667
Q ss_pred ccEEecccCCCC--CcccccCCCcCCcEEECcCCCCC---CCChhhhhccCCCccEEECCCCCCCCCc--hhhhCCCCCc
Q psy12423 169 LQHLDISYNELE--SLPDWIDTCPELETIFASHNRIT---QLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLK 241 (567)
Q Consensus 169 L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~ 241 (567)
|+.|.|+.|.++ ++...+..+|+|+.|+|..|..- ..+..+ +..|++|||++|++..++ .....++.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i----~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI----LQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh----hhHHhhccccCCcccccccccccccccchh
Confidence 888888888877 34444566788888888888422 333333 557888888888877766 3457778888
Q ss_pred EEEccCCCCCCC--chh----hhcCCCCCcEEEccCCcCCCCCC
Q psy12423 242 YLFLQSNSINIL--PQL----FLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 242 ~L~Ls~N~l~~l--~~~----~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
.|+++.|.|.++ |+. ....+++|++|+++.|++...+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 888888887743 221 12456788888888888876553
No 43
>KOG1379|consensus
Probab=99.18 E-value=7.6e-10 Score=106.42 Aligned_cols=153 Identities=19% Similarity=0.304 Sum_probs=99.2
Q ss_pred chhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeec--CccceEEEEEEEecCceEE
Q psy12423 313 GDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLH--PVTHRYMLHIASVGEAKAI 390 (567)
Q Consensus 313 ~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~--~~~~~~~l~~a~~Gdsr~~ 390 (567)
+..+..+....-....+.......|...+.+++..... .....-+++|+|.+... .. ++++||+|||-..
T Consensus 123 g~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~----~~~~~vGSSTAcI~~l~~~~~----~Lh~aNLGDSGF~ 194 (330)
T KOG1379|consen 123 GAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS----QKVPIVGSSTACILALDRENG----KLHTANLGDSGFL 194 (330)
T ss_pred HHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh----cCCCCCCcceeeeeeeecCCC----eEEEeeccCcceE
Confidence 44455555555555544444445677787777764433 32233456777777666 44 8999999999999
Q ss_pred EEeCCeeeeCC----CCCC--CCCCCCCCCCCCCccC---CCceEEEEecCCCeEEEEEcCCCC----------------
Q psy12423 391 LCRQAGSLTFT----HAPT--LSPPVPPQGSCPLSFP---DPHVTEVMLHENDHFLILANKSVS---------------- 445 (567)
Q Consensus 391 l~r~~~~~~lt----~dh~--~~r~~g~~~~~~~~~~---~p~v~~~~l~~~d~~lil~sDGl~---------------- 445 (567)
++|+|+.+.-| |..+ ..=+.+.-++..++.- .-|++.+.+.++ |.+|+||||||
T Consensus 195 VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~ 273 (330)
T KOG1379|consen 195 VVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLD 273 (330)
T ss_pred EEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhh
Confidence 99999876544 2222 1111222111111222 347788898887 46779999999
Q ss_pred -----CHHHHHHHHHHHHHH----------------------cCC-CCCcEEEEEEe
Q psy12423 446 -----EPVLAAKRIQDLAQS----------------------YGS-EDNLSVLVLRF 474 (567)
Q Consensus 446 -----~~~~~a~~l~~~a~~----------------------~g~-~dnit~~vv~~ 474 (567)
+++..|+++.+.|.. +|+ .|+|||+|..+
T Consensus 274 ~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 274 ARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred ccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 678899999988876 355 79999998753
No 44
>KOG1259|consensus
Probab=99.17 E-value=6e-12 Score=119.69 Aligned_cols=221 Identities=21% Similarity=0.207 Sum_probs=155.1
Q ss_pred CCCCCCccEEEecCCC-------CCC-cc--ccCCCCCccEEEccCCCCCCC-CCc-ccccCcEEEcccCcccceecCC-
Q psy12423 78 PEVKGELTSVNLRSNQ-------LKG-TI--ILGNYGNLTTLDVSENSIESL-DLG-ALNRLESIKCSRNQLKTLVLNG- 144 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~-------l~~-~~--~l~~l~~L~~L~L~~n~l~~~-~~~-~l~~L~~L~ls~n~l~~l~~~~- 144 (567)
+..+..|+.|.+++.. |.. .. .+.-+.+|+.+.++.+.-..+ .+. .-+.|.++......+...+.-.
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence 3445678888776542 111 11 244567888888888764443 121 2256777777766555443222
Q ss_pred -CCCcEEEcCCCc-cccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEE
Q psy12423 145 -SSLISVIAGNNK-LQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220 (567)
Q Consensus 145 -~~L~~L~l~~n~-l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L 220 (567)
..+.....+.-. .++...... ...|++||||+|.|+.+.+.+.-.|.++.|++++|.|..+..-.+ +++|+.|
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~---L~~L~~L 334 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAE---LPQLQLL 334 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhh---cccceEe
Confidence 222222111111 111111111 457999999999999999999999999999999999998877443 8999999
Q ss_pred ECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC--CCcCCccceeecccCCccc
Q psy12423 221 QLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 221 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~--~~~~~~~L~~~~l~~~~~~ 298 (567)
|||+|.++.+..+-..+-+.+.|.|++|.|..+.. +.++-+|..||+++|+|..+.. .+++++-|....+.+|+..
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999999988888888999999999999998865 5688899999999999986553 4667888888888888887
Q ss_pred cCCcc
Q psy12423 299 NSDAL 303 (567)
Q Consensus 299 ~~~~~ 303 (567)
....+
T Consensus 413 ~~vdY 417 (490)
T KOG1259|consen 413 GSVDY 417 (490)
T ss_pred ccchH
Confidence 66443
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.9e-11 Score=108.89 Aligned_cols=121 Identities=28% Similarity=0.406 Sum_probs=44.4
Q ss_pred CCccccccCCCCCCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423 154 NNKLQSLIVSPRPARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 232 (567)
.+.+...+...-+..+++|+|.+|.|+.|.. ++ .+.+|+.|+|++|.|+.++.-. . ++.|+.|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~--~-L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLP--G-LPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S---TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCcc--C-hhhhhhcccCCCCCCcccc
Confidence 3334443333335578899999999988753 54 5788999999999999886422 2 8899999999999999876
Q ss_pred hh-hCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCC
Q psy12423 233 LI-RQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 233 ~~-~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
.+ ..+++|++|+|++|+|..+.. ..+..+++|+.|+|.+|+++.-+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 55 468999999999999886544 34578899999999999887554
No 46
>KOG3207|consensus
Probab=99.14 E-value=9.4e-12 Score=124.19 Aligned_cols=198 Identities=22% Similarity=0.211 Sum_probs=155.2
Q ss_pred CCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccCccccee-----cCCC
Q psy12423 79 EVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLKTLV-----LNGS 145 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n~l~~l~-----~~~~ 145 (567)
.++.+|+.+.|.++.+.... ....+++++.|||+.|-+.... ...+++|+.|+++.|.+.... ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35778999999998877554 4677999999999999887642 567899999999999987544 3468
Q ss_pred CCcEEEcCCCccccccCCCC---CCcccEEecccCC-CCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 146 SLISVIAGNNKLQSLIVSPR---PARLQHLDISYNE-LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
.|+.|.++.|.++.-..... +++|+.|+|..|. +..-.....-+..|+.|+|++|.+-..+.....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999999986554444 8999999999995 3322223455678999999999998887554444489999999
Q ss_pred CCCCCCCC--Cchh-----hhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCC
Q psy12423 222 LSFNRLTS--LPSL-----IRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 222 Ls~N~l~~--lp~~-----~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
++.+.|.+ +|+. ...+++|++|++..|+|.+++. .-+..+++|+.|.+..|.|+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999987 3443 3568899999999999987665 223467888888888998874
No 47
>KOG0531|consensus
Probab=99.11 E-value=9.2e-12 Score=131.47 Aligned_cols=189 Identities=26% Similarity=0.272 Sum_probs=137.5
Q ss_pred CCCccEEEecCCCCCCccc-cCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCcccceec--CCCCCcEEEcCCCc
Q psy12423 81 KGELTSVNLRSNQLKGTII-LGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLVL--NGSSLISVIAGNNK 156 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~~--~~~~L~~L~l~~n~ 156 (567)
+.+|..|++..|+|..... +..+++|++|++++|.|+.+ ++..++.|+.|++++|.|..+.. .+..|+.+++++|.
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcch
Confidence 4577777888887777665 77777888888888887776 46667778888888887777653 26777888888888
Q ss_pred cccccC--CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCC--CccEEECCCCCCCCCch
Q psy12423 157 LQSLIV--SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG--KLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 157 l~~~~~--~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~Ls~N~l~~lp~ 232 (567)
+..+.. ...+.+++.+++.+|.+..+. ++..+..+..+++..|.++.+..... +. .|+.+++++|.+..++.
T Consensus 174 i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~~---~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 174 IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLNE---LVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCccc---chhHHHHHHhcccCccccccc
Confidence 877777 244678888888888887663 34455566666888888876644322 22 37888888888888766
Q ss_pred hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
.+..+..+..|++.+|++..+.. +...+.+..+.+..|++.
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 67778888888888888886654 345667777777888766
No 48
>KOG1909|consensus
Probab=99.11 E-value=9.7e-12 Score=120.97 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=127.6
Q ss_pred cCCCCCccEEEccCCCCCCCC-------CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCccccccCCCCCCccc
Q psy12423 100 LGNYGNLTTLDVSENSIESLD-------LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNKLQSLIVSPRPARLQ 170 (567)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~l~~~~~~~~~~~L~ 170 (567)
+...+.|++|+||.|.+..-. +.++..|++|.|.+|.+...... ...|..|. .++. ....+.|+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk-----~~~~~~Lr 160 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKK-----AASKPKLR 160 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhc-----cCCCcceE
Confidence 455668888888888876531 44566777777777776543211 01122221 1111 11156899
Q ss_pred EEecccCCCCCc-----ccccCCCcCCcEEECcCCCCCC--C--ChhhhhccCCCccEEECCCCCCCC-----CchhhhC
Q psy12423 171 HLDISYNELESL-----PDWIDTCPELETIFASHNRITQ--L--PSQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQ 236 (567)
Q Consensus 171 ~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~N~l~~--l--~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~ 236 (567)
++....|++..- ...|...+.|+.+.+..|.|.. + -...+.. +++|+.|||..|-++. +...+..
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcc
Confidence 999999999844 3457788999999999999873 2 2222333 8999999999999884 4556788
Q ss_pred CCCCcEEEccCCCCCCCchh-----hhcCCCCCcEEEccCCcCC-----CCCCCCcCCccceeecccCCcc
Q psy12423 237 IASLKYLFLQSNSINILPQL-----FLQNSSKLKVLNISKNCLK-----MLPSLQKGFYLLNISQLRLPGF 297 (567)
Q Consensus 237 l~~L~~L~Ls~N~l~~l~~~-----~l~~l~~L~~L~Ls~N~l~-----~ip~~~~~~~~L~~~~l~~~~~ 297 (567)
+++|+.|++++|.+..-... +-...|+|+.|.|.+|.|+ .+-..+...+.|..+.+..|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 89999999999999853332 2346899999999999997 1111122344555556666655
No 49
>KOG0531|consensus
Probab=99.03 E-value=4.9e-11 Score=125.99 Aligned_cols=235 Identities=21% Similarity=0.294 Sum_probs=180.7
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
+.+++..|.|..+-..+..+++|+.|++.+|.|..+...+ ..+
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-------------------------------------~~~ 117 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-------------------------------------SSL 117 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccch-------------------------------------hhh
Confidence 4566778888876566888999999999999999876421 335
Q ss_pred CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceec----CCCCCcEEEcCCCc
Q psy12423 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAGNNK 156 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~~n~ 156 (567)
++|++|+|++|.|+....+..++.|+.|++++|.|..+. +..+..|+.+++++|.+..+.. .+.+++.+.+..|.
T Consensus 118 ~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 689999999999998888888888999999999999875 6668999999999999887654 46788899999999
Q ss_pred cccccCCCCCCcccEEecccCCCCCcccccCCCcC--CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh
Q psy12423 157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPE--LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234 (567)
Q Consensus 157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 234 (567)
+..+.....+..+..+++..|.++.+-+ +..+.. |+.+++++|.+..++..+-. +..+..|++..|++..+.. +
T Consensus 198 i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~--~~~l~~l~~~~n~~~~~~~-~ 273 (414)
T KOG0531|consen 198 IREIEGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLEN--LKNLPVLDLSSNRISNLEG-L 273 (414)
T ss_pred hhcccchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccc--cccccccchhhcccccccc-c
Confidence 8888776666677777889998886633 233333 89999999999987533332 7789999999998887533 4
Q ss_pred hCCCCCcEEEccCCCCCC----CchhhhcCCCCCcEEEccCCcCCCC
Q psy12423 235 RQIASLKYLFLQSNSINI----LPQLFLQNSSKLKVLNISKNCLKML 277 (567)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~----l~~~~l~~l~~L~~L~Ls~N~l~~i 277 (567)
...+.+..+.+..|.+.. .........+.+..+.+.+|.+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 455677777788887662 1222235678888889999988743
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.5e-09 Score=80.33 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=47.2
Q ss_pred CCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcC
Q psy12423 215 GKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274 (567)
Q Consensus 215 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l 274 (567)
++|++|++++|+|+.+|. .|..+++|++|++++|.|+.+++..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467777788777777764 567788888888888888888888888888888888888875
No 51
>KOG4579|consensus
Probab=98.73 E-value=1.2e-09 Score=92.85 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=100.2
Q ss_pred cccEEecccCCCCCcccc---cCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEE
Q psy12423 168 RLQHLDISYNELESLPDW---IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~---l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 244 (567)
.+..++|+.|.+..+++. +.....|+..+|++|.+..+|..+... ++.++.|+|++|.|+++|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~k-f~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIK-FPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhc-cchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 456788888888766653 455567788899999999998887654 7789999999999999999999999999999
Q ss_pred ccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
++.|.+...|.-++. +.+|-.|+..+|.+..||-..+--...-+..++++++.+.
T Consensus 107 l~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence 999999988887764 8888999999999998886533222333334455555443
No 52
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=98.68 E-value=6.2e-07 Score=84.32 Aligned_cols=130 Identities=21% Similarity=0.161 Sum_probs=82.2
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEE
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLH 380 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~ 380 (567)
..++.+.|+++.+..+......+...+.+.......+.+ .+..+++.+..... ....++++.+.+.+... +++
T Consensus 30 ~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~----~l~~~n~~l~~~~~-~~~~~T~~~~~id~~~~--~l~ 102 (193)
T smart00331 30 RLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQ----ILERLNRAIYENGE-DGMFATLFLALYDFAGG--TLS 102 (193)
T ss_pred eEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhcCC-CCcEEEEEEEEEECCCC--EEE
Confidence 456788999988877777777766665544332223333 34455665554422 22334444444322212 789
Q ss_pred EEEecCceEEEEe-CCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC
Q psy12423 381 IASVGEAKAILCR-QAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS 445 (567)
Q Consensus 381 ~a~~Gdsr~~l~r-~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~ 445 (567)
++++||+|+|+++ +++..+.+.+ .++.+|... ..++++..+.+.++|. |+++|||||
T Consensus 103 ~~~~Gd~~~~~~~~~~~~~~~~~~--~~~~lG~~~-----~~~~~~~~~~l~~gd~-l~l~TDGl~ 160 (193)
T smart00331 103 YANAGHSPPYLLRADGGLVEDLDD--LGAPLGLEP-----DVEVDVRELTLEPGDL-LLLYTDGLT 160 (193)
T ss_pred EEeCCCCceEEEECCCCeEEEcCC--CCceeeeCC-----CCcceeEEEeeCCCCE-EEEECCCcc
Confidence 9999999999999 6666666554 345666433 2347788888888765 558999999
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.1e-08 Score=76.79 Aligned_cols=58 Identities=40% Similarity=0.592 Sum_probs=34.0
Q ss_pred cccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423 168 RLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 226 (567)
+|++|++++|+++.+| .+|..+++|++|++++|.++.+++..|.+ +++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN-LPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTT-STTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC-CCCCCEEeCcCCc
Confidence 4556666666666554 35555666666666666666655555554 5556666655554
No 54
>KOG1859|consensus
Probab=98.67 E-value=4.9e-10 Score=118.17 Aligned_cols=127 Identities=29% Similarity=0.375 Sum_probs=68.2
Q ss_pred cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh-hCCCCCcEEEcc
Q psy12423 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQ 246 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls 246 (567)
.|...++++|.+..+...+.-++.|+.|+|++|+++.... +.. ++.|++|||++|.++.+|..- .++ .|..|+|+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~-Lr~--l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN-LRR--LPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH-HHh--cccccccccccchhccccccchhhh-hheeeeec
Confidence 4555556666665555555555666666666666665542 211 556666666666666555422 222 26666666
Q ss_pred CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC--CcCCccceeecccCCccccC
Q psy12423 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL--QKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~--~~~~~~L~~~~l~~~~~~~~ 300 (567)
+|.++.+-. +.++.+|+.||+++|-|...... ...+..|..+.+.+|+.|+.
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 666665544 24566666666666655533321 11334455555555555544
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=1.2e-07 Score=104.91 Aligned_cols=89 Identities=25% Similarity=0.328 Sum_probs=61.2
Q ss_pred CcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCC-CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423 192 LETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI 269 (567)
Q Consensus 192 L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L 269 (567)
++.|+|++|.+. .+|..+.. +++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++...+..+.++++|+.|+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhC--CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 667777777776 45554433 777777777777776 36767777777777777777777544444567777777777
Q ss_pred cCCcCC-CCCCCCc
Q psy12423 270 SKNCLK-MLPSLQK 282 (567)
Q Consensus 270 s~N~l~-~ip~~~~ 282 (567)
++|+++ .+|..+.
T Consensus 498 s~N~l~g~iP~~l~ 511 (623)
T PLN03150 498 NGNSLSGRVPAALG 511 (623)
T ss_pred cCCcccccCChHHh
Confidence 777776 6665543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=1.5e-08 Score=95.71 Aligned_cols=195 Identities=20% Similarity=0.205 Sum_probs=105.0
Q ss_pred CCCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCCCcccc-cCcEEEcccCcccceecCCCCCcEE
Q psy12423 78 PEVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLDLGALN-RLESIKCSRNQLKTLVLNGSSLISV 150 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~L~~L~ls~n~l~~l~~~~~~L~~L 150 (567)
+.++|+|+.++||.|.+.... .++.-+.|++|.+++|.+..+.-+... .|.+| ..| .-..+.+.|+.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~n---KKaa~kp~Le~v 162 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYN---KKAADKPKLEVV 162 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHH---hhhccCCCceEE
Confidence 345677777777777766432 345556777777777766554211000 00000 000 000123455555
Q ss_pred EcCCCccccccCCCC------CCcccEEecccCCCCC--c----ccccCCCcCCcEEECcCCCCCCCChhh----hhccC
Q psy12423 151 IAGNNKLQSLIVSPR------PARLQHLDISYNELES--L----PDWIDTCPELETIFASHNRITQLPSQF----FCREL 214 (567)
Q Consensus 151 ~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~--l----p~~l~~l~~L~~L~Ls~N~l~~l~~~~----~~~~l 214 (567)
.+..|++..-+...+ -..|+.+.+..|.|.. + -..+..+.+|+.|+|..|.++...... ... +
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W 241 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-W 241 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc-c
Confidence 555555544332221 2356677777776651 1 112345667777777777776433222 222 5
Q ss_pred CCccEEECCCCCCCC--Cchhh-----hCCCCCcEEEccCCCCCC-------CchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423 215 GKLHTLQLSFNRLTS--LPSLI-----RQIASLKYLFLQSNSINI-------LPQLFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 215 ~~L~~L~Ls~N~l~~--lp~~~-----~~l~~L~~L~Ls~N~l~~-------l~~~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
+.|++|.+..|-++. ....+ ...++|..|-..+|.+.. ++.-.-.++|-|..|.+.+|+|+...
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 567777777776663 21111 235677777777776541 22222356778888888899988554
No 57
>KOG1859|consensus
Probab=98.55 E-value=1.1e-09 Score=115.49 Aligned_cols=183 Identities=22% Similarity=0.229 Sum_probs=121.0
Q ss_pred CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhcccc----ccccCCcccccCCCCCCCCccEEEec
Q psy12423 15 PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDF----EQDEDGIIVERREPEVKGELTSVNLR 90 (567)
Q Consensus 15 p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~L~~L~Ls 90 (567)
|-.+..+..|++|.|.++.|...- ++..--..|+.+++.+...-....+ ....++.++ ..|...+.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W--------n~L~~a~fs 172 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW--------NKLATASFS 172 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh--------hhHhhhhcc
Confidence 335667889999999999988622 1111112333343333222111111 111111111 267788888
Q ss_pred CCCCCCcc-ccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee---cCCCCCcEEEcCCCccccccCCCC
Q psy12423 91 SNQLKGTI-ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSLIVSPR 165 (567)
Q Consensus 91 ~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~~~~~~ 165 (567)
+|.+.... .+.-++.|+.|+|++|+++... +..+++|++|||+.|.+..++ .....|..|.+++|.++.+.....
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~ 252 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN 252 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHh
Confidence 88887655 6677788999999999988874 667888999999999888766 334568888888888887766666
Q ss_pred CCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCC
Q psy12423 166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLP 206 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~ 206 (567)
+.+|+.||+++|-|.... ..+..+..|+.|+|.+|.+..-|
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 788888888888776432 23556778888888888776433
No 58
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.50 E-value=5.6e-06 Score=77.74 Aligned_cols=156 Identities=20% Similarity=0.208 Sum_probs=89.7
Q ss_pred eeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEe
Q psy12423 305 GIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASV 384 (567)
Q Consensus 305 ~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~ 384 (567)
.+.|..+.+..+......+...+.........+.+. ...+|+.+..........++++.+...+... +++++++
T Consensus 8 ~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~----l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~--~l~~~~a 81 (193)
T PF07228_consen 8 IVGDVSGHGVSAALLSAALASAIRELLDEGLDPEEL----LEALNRRLYRDLKGDNRYATACYAIIDPETG--TLTYANA 81 (193)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHH----HHHHHHHHHHHTTTTSTTEEEEEEEEETTTT--EEEEEEE
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHH----HHHHHHHHHHHhhhccccceEEEEEecccce--EEEEeCC
Confidence 345555555445544444444444333222223333 3444555533323332344555455444333 7899999
Q ss_pred cCceEEEEeCCe--eeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423 385 GEAKAILCRQAG--SLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS----------------- 445 (567)
Q Consensus 385 Gdsr~~l~r~~~--~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------- 445 (567)
|+..++++|.++ ...+...... +|... ..++...++.+.++| .|+++||||+
T Consensus 82 G~~~~l~~~~~~~~~~~~~~~~~~---lG~~~-----~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~ 152 (193)
T PF07228_consen 82 GHPPPLLLRPGGREIEQLESEGPP---LGIFE-----DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLE 152 (193)
T ss_dssp SSSEEEEEETTCTEEEEETCSSBB---CSSSC-----TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHH
T ss_pred CCCCEEEEeccccceeecccCccc---eeeec-----cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHH
Confidence 999999999833 3333322222 45322 134566677777765 5668999998
Q ss_pred --------CHHHHHHHHHHHHHHc---CCCCCcEEEEEEeC
Q psy12423 446 --------EPVLAAKRIQDLAQSY---GSEDNLSVLVLRFQ 475 (567)
Q Consensus 446 --------~~~~~a~~l~~~a~~~---g~~dnit~~vv~~~ 475 (567)
++++.++.+++.+... ...|++|++|++++
T Consensus 153 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 153 LLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 4778888899988874 47899999999874
No 59
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.48 E-value=5.1e-06 Score=93.61 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=97.3
Q ss_pred ceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEE
Q psy12423 303 LIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIA 382 (567)
Q Consensus 303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a 382 (567)
.+.+.|+.+.+..+.......-..+.+.......+ ..++..+|..+...... ...+|+..+.+.+.+. .+..+
T Consensus 582 ~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~----~~ai~~lN~~L~~~~~~-~~faTl~l~~IDl~~g--~~~~~ 654 (764)
T TIGR02865 582 AVAISDGMGSGPEAAQESSACVRLLEKFLESGFDR----EVAIKTVNSILSLRSTD-EKFSTLDLSVIDLYTG--QAEFV 654 (764)
T ss_pred EEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCCC-CeEEEEEEEEEECCCC--eEEEE
Confidence 45567776666555544443333332221111122 33445555555433222 2334444444433222 78999
Q ss_pred EecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423 383 SVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS----------------- 445 (567)
Q Consensus 383 ~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------- 445 (567)
++|+++.|+.|++...+++..+. .+|... ..++++...++.++| ++|++|||+|
T Consensus 655 ~aG~~p~~i~r~~~v~~i~s~~l---PlGil~-----~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l 725 (764)
T TIGR02865 655 KVGAVPSFIKRGAKVEVIRSSNL---PIGILD-----EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKL 725 (764)
T ss_pred ecCCCceEEEECCEEEEecCCCc---eeEecc-----CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHH
Confidence 99999999999988888765432 134321 235677788888875 5669999998
Q ss_pred ------CHHHHHHHHHHHHHHcC---CCCCcEEEEEEe
Q psy12423 446 ------EPVLAAKRIQDLAQSYG---SEDNLSVLVLRF 474 (567)
Q Consensus 446 ------~~~~~a~~l~~~a~~~g---~~dnit~~vv~~ 474 (567)
+|++.|+.|++.|..+. ..||+|++|+++
T Consensus 726 ~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 726 KETNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 57789999999998764 379999999986
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5.9e-07 Score=99.54 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=87.5
Q ss_pred cccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcEEE
Q psy12423 168 RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKYLF 244 (567)
Q Consensus 168 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~ 244 (567)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 3788999999998 67888999999999999999998 67766543 8999999999999985 888899999999999
Q ss_pred ccCCCCC-CCchhhhcCCCCCcEEEccCCcCC
Q psy12423 245 LQSNSIN-ILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 245 Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
|++|.++ .+|..+.....++..+++.+|...
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999998 566654333456778888888643
No 61
>KOG4579|consensus
Probab=98.38 E-value=1.8e-08 Score=85.70 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=94.0
Q ss_pred CcEEEcCCCccccccCCCC----CCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 147 LISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 147 L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
+..++++.|++..+..... ...|+..+|++|.+..+|..|. .++.+++|+|++|.|+.+|.++-. ++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aa--m~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAA--MPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhh--hHHhhhcc
Confidence 3344555554443322111 4578889999999999987654 556999999999999999999544 99999999
Q ss_pred CCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 222 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
++.|.+...|..+..+.+|-.|+..+|.+..||...| .-...-..++.++.+.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLG 159 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCccc
Confidence 9999999999888789999999999999999998754 2222333445666554
No 62
>KOG1644|consensus
Probab=98.35 E-value=6.5e-07 Score=81.39 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=83.2
Q ss_pred CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L 243 (567)
..+...+||++|.+..++. |..++.|.+|.|++|+|+.|.+.+..- +++|..|.|.+|.|..+.+ -+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~-~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTF-LPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhh-ccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4567788999998887754 778889999999999999888877654 7889999999998887654 35678888999
Q ss_pred EccCCCCCCCch---hhhcCCCCCcEEEccCCc
Q psy12423 244 FLQSNSINILPQ---LFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 244 ~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~ 273 (567)
.+-+|.++.-.. .++..+|+|+.||+++=.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 998888885544 345678888888877643
No 63
>KOG4658|consensus
Probab=98.31 E-value=4.4e-07 Score=103.01 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=20.6
Q ss_pred CcEEEccCC-CCCcCCccCCCCCCCCEEeCcCCCCCCCChhh
Q psy12423 1 LQEFRVDRN-DLTEFPGNQDSFPRLKFLSAAQNRISHLPVFL 41 (567)
Q Consensus 1 L~~L~Ls~n-~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~ 41 (567)
|++|||++| .+.++|+.++.|-+|++|+|+++.|+.+|..+
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 344555544 34455555555555555555555555555444
No 64
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=98.25 E-value=1.2e-05 Score=76.75 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=41.9
Q ss_pred cCceeEEEEeecCccceEEEEEEEecCceEEE-EeCCeeeeCCCCCC-----CCCCCCCCCCCCCccCCCceEEEEecCC
Q psy12423 360 SLSATLCHLSLHPVTHRYMLHIASVGEAKAIL-CRQAGSLTFTHAPT-----LSPPVPPQGSCPLSFPDPHVTEVMLHEN 433 (567)
Q Consensus 360 ~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l-~r~~~~~~lt~dh~-----~~r~~g~~~~~~~~~~~p~v~~~~l~~~ 433 (567)
..+++++.+.+.+. .++++++||||+|+ .++|...+++.+|+ .++.+.... .....++..+.+.++
T Consensus 96 ~~~tTl~~~v~~~~----~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 167 (212)
T PF13672_consen 96 DYGTTLLALVIDPD----KVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQTRSLTGDD----PEPDVQYGSIPLEEG 167 (212)
T ss_dssp T-EE-EEEEEEETT----EEEEEEESS-EEEEEEETTEEEE-S---BHHHHHCTTSCCHHC----CCTETEEEEEE--TT
T ss_pred ccCceEEEEEEECC----EEEEEEECCCeEEEEECCCEEEEcCCCccchhhhhhhccCccc----cccCCeEEEEEcCCC
Confidence 34455554556665 79999999999964 57888889999998 222222111 112235555666666
Q ss_pred CeEEEEEcCCCC
Q psy12423 434 DHFLILANKSVS 445 (567)
Q Consensus 434 d~~lil~sDGl~ 445 (567)
|. ++|||||+|
T Consensus 168 d~-ilL~SDG~~ 178 (212)
T PF13672_consen 168 DV-ILLCSDGVW 178 (212)
T ss_dssp -E-EEEE-HHHH
T ss_pred CE-EEEECcCcc
Confidence 54 558999999
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.5e-06 Score=86.43 Aligned_cols=54 Identities=22% Similarity=0.128 Sum_probs=29.9
Q ss_pred CCCCCccEEEccCCCCCCCCCcccccCcEEEcccC-cccceecC-CCCCcEEEcCCC
Q psy12423 101 GNYGNLTTLDVSENSIESLDLGALNRLESIKCSRN-QLKTLVLN-GSSLISVIAGNN 155 (567)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n-~l~~l~~~-~~~L~~L~l~~n 155 (567)
..+.+++.|++++|.++.++ .-..+|++|.++++ .++.++.. ..+|+.|.+++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 34577788888888777766 22335777777653 33333321 124444444444
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.1e-06 Score=60.76 Aligned_cols=39 Identities=28% Similarity=0.550 Sum_probs=34.9
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCCh
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPV 39 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~ 39 (567)
|++|+|++|+|+++|+.|++|++|++|++++|+|+++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 789999999999999889999999999999999998764
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=9.5e-06 Score=83.28 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=70.0
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCC-CCCCCCCcccccCcEEEcccC-cccceecCCCCCcEEEcCCCccccc
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCSRN-QLKTLVLNGSSLISVIAGNNKLQSL 160 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~L~~L~ls~n-~l~~l~~~~~~L~~L~l~~n~l~~~ 160 (567)
+++.|++++|.++..+. -..+|+.|.++++ .++.++-.-..+|++|.+++| .+..++ .+|+.|.+..+.+..+
T Consensus 53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~n~~~~L 127 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKGSATDSI 127 (426)
T ss_pred CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCCCCCccc
Confidence 45555555554444331 1124555555542 233332111245666666665 444433 3455566655544332
Q ss_pred cCCCCCCcccEEecccCCCC---CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423 161 IVSPRPARLQHLDISYNELE---SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
. .++++|+.|.+.+++.. .+|.. -.++|++|++++|....+|..+ +.+|+.|.++.+..
T Consensus 128 ~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L----P~SLk~L~ls~n~~ 189 (426)
T PRK15386 128 K--NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL----PESLQSITLHIEQK 189 (426)
T ss_pred c--cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc----cccCcEEEeccccc
Confidence 2 23567777777543311 12211 1257888888888877666554 56888888887643
No 68
>KOG2982|consensus
Probab=98.16 E-value=3.9e-07 Score=87.31 Aligned_cols=192 Identities=19% Similarity=0.206 Sum_probs=107.5
Q ss_pred CCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCC--CC-cccccCcEEEcccCccc-----ceecCCCCCcE
Q psy12423 82 GELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESL--DL-GALNRLESIKCSRNQLK-----TLVLNGSSLIS 149 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~--~~-~~l~~L~~L~ls~n~l~-----~l~~~~~~L~~ 149 (567)
+.++.|||.+|.|+.-. .+.++|.|++|+++.|.+... .+ ..+.+|+.|.|.+..+. .+...++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 35566666666665432 345566666666666665542 11 23345666665554432 22234455555
Q ss_pred EEcCCCccccccCCC-----CCCcccEEecccCCCC---CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 150 VIAGNNKLQSLIVSP-----RPARLQHLDISYNELE---SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 150 L~l~~n~l~~~~~~~-----~~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
|.++.|.+..+.... +-+.+++|.+-.|... ++...-.-++++..+.+..|.+......-....++.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 555555433322211 1234555555555332 11112234577888888888877554432222367778888
Q ss_pred CCCCCCCCCc--hhhhCCCCCcEEEccCCCCCCCch------hhhcCCCCCcEEEccCCcCC
Q psy12423 222 LSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQ------LFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 222 Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l~~------~~l~~l~~L~~L~Ls~N~l~ 275 (567)
|+.|+|.+.. ..+.+++.|..|.+++|.+.+--. -+.+.+++++.|+=+ +++
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 9988888754 357788899999999998763211 123577788776543 444
No 69
>KOG4658|consensus
Probab=98.16 E-value=1.9e-06 Score=97.90 Aligned_cols=97 Identities=16% Similarity=0.027 Sum_probs=46.1
Q ss_pred CcccccCCCcCCcEEECcCCCCCCCChhhhhc-----cCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCch
Q psy12423 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCR-----ELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ 255 (567)
Q Consensus 181 ~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~-----~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~ 255 (567)
..+..+..+.+|+.|.+.++.+.++....+.. .++++..+...++..-..+.+....++|+.|.+..+...+.|.
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 44445566667777777776665433322110 0112222222222222223333445677777777766554444
Q ss_pred hhhcCCCCCcEEEccCCcCCCC
Q psy12423 256 LFLQNSSKLKVLNISKNCLKML 277 (567)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~i 277 (567)
.....+..++.+-+..+.+..+
T Consensus 788 ~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 788 PKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred CHHHHhhhcccEEecccccccc
Confidence 3344555555555555555543
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.2e-06 Score=59.19 Aligned_cols=39 Identities=36% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 239 ~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
+|++|++++|+|+.+|+. +.++++|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 344555555555544443 244555555555555554443
No 71
>KOG2982|consensus
Probab=98.13 E-value=6.9e-07 Score=85.69 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=133.8
Q ss_pred ccEEEecCCCCCCcc---cc-CCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423 84 LTSVNLRSNQLKGTI---IL-GNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLKTLV----LNGSSLISV 150 (567)
Q Consensus 84 L~~L~Ls~n~l~~~~---~l-~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L 150 (567)
+.-|.+.++.|.... .+ ...+.++.|||..|.|..-+ +..++.|+.|+++.|++...+ ....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 445556666665433 22 34568999999999998742 678999999999999987654 455689999
Q ss_pred EcCCCccccccCCCC---CCcccEEecccCCCCCc--c-cccCCC-cCCcEEECcCCCCCCCCh--hhhhccCCCccEEE
Q psy12423 151 IAGNNKLQSLIVSPR---PARLQHLDISYNELESL--P-DWIDTC-PELETIFASHNRITQLPS--QFFCRELGKLHTLQ 221 (567)
Q Consensus 151 ~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~l--p-~~l~~l-~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~ 221 (567)
.+.+..+.......+ ++.++.|.+|.|.+..+ . +..... +.+++|.+..|....... .+.. .++++..+.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~ 205 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVF 205 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-hcccchhee
Confidence 998887765544444 77889999999966532 1 122222 356666665554331100 1111 278899999
Q ss_pred CCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCC
Q psy12423 222 LSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 222 Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+..|.|..... ....++.+-.|+|+.|+|.++.. +.+..++.|..|.+++|++.
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 99999887543 45677888899999999986543 44678999999999999986
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=5e-07 Score=85.57 Aligned_cols=168 Identities=21% Similarity=0.199 Sum_probs=109.9
Q ss_pred ccCCCCCccEEEccCCCCCCCC-------CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCccccccCCCCCCcc
Q psy12423 99 ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNKLQSLIVSPRPARL 169 (567)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~l~~~~~~~~~~~L 169 (567)
.+.++|.|+..+||.|.+..-. ++.-+.|.+|.+++|.+..+... ...|.+| ..|+- ..--+.|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~nKK-----aa~kp~L 159 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYNKK-----AADKPKL 159 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHHhh-----hccCCCc
Confidence 4567788888888888776521 34456677777777766543211 0111111 11110 0013679
Q ss_pred cEEecccCCCCCccc-----ccCCCcCCcEEECcCCCCCC--CCh----hhhhccCCCccEEECCCCCCCC-----Cchh
Q psy12423 170 QHLDISYNELESLPD-----WIDTCPELETIFASHNRITQ--LPS----QFFCRELGKLHTLQLSFNRLTS-----LPSL 233 (567)
Q Consensus 170 ~~L~Ls~n~l~~lp~-----~l~~l~~L~~L~Ls~N~l~~--l~~----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 233 (567)
+......|++...|. .+..-.+|+++.+..|.|.. +.. .++. +.+|+.|||..|-++. +...
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y--~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY--SHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH--hCcceeeeccccchhhhhHHHHHHH
Confidence 999999999986653 23444689999999999983 222 2233 6899999999999885 3344
Q ss_pred hhCCCCCcEEEccCCCCCCCchh-hh-----cCCCCCcEEEccCCcCC
Q psy12423 234 IRQIASLKYLFLQSNSINILPQL-FL-----QNSSKLKVLNISKNCLK 275 (567)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~l~~~-~l-----~~l~~L~~L~Ls~N~l~ 275 (567)
+...+.|+.|.+..|.++.-... ++ ...|+|..|-+.+|.+.
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 56677899999999998843322 11 24688999999999764
No 73
>KOG1644|consensus
Probab=97.92 E-value=1.5e-05 Score=72.75 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223 (567)
Q Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls 223 (567)
.+...+++++|.+..+.....++.|..|.|.+|.|+.|.+.+. .+++|+.|.|.+|.|..+.+-.-...++.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3455666777777666666667788888888888887754443 456788888888887754332211127788888888
Q ss_pred CCCCCCCch----hhhCCCCCcEEEccCCCCC
Q psy12423 224 FNRLTSLPS----LIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 224 ~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~ 251 (567)
+|.++.-.. .+..+++|+.||++.-...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 888775432 3577889999988765433
No 74
>KOG2120|consensus
Probab=97.83 E-value=7.4e-07 Score=85.50 Aligned_cols=166 Identities=18% Similarity=0.139 Sum_probs=91.7
Q ss_pred CccEEEccCCCCCCCC----CcccccCcEEEcccCccccee----cCCCCCcEEEcCCCc-cccccCCCC---CCcccEE
Q psy12423 105 NLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNK-LQSLIVSPR---PARLQHL 172 (567)
Q Consensus 105 ~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~-l~~~~~~~~---~~~L~~L 172 (567)
.|++|||++..|+.-. +..+.+|+.|.+.++++.+-+ ....+|+.|+++.+. ++....... ++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777766532 455677777777777776543 345667777776542 332222211 5667777
Q ss_pred ecccCCCC-C-cccccCC-CcCCcEEECcCCC--CCCCChhhhhccCCCccEEECCCCC-CCC-CchhhhCCCCCcEEEc
Q psy12423 173 DISYNELE-S-LPDWIDT-CPELETIFASHNR--ITQLPSQFFCRELGKLHTLQLSFNR-LTS-LPSLIRQIASLKYLFL 245 (567)
Q Consensus 173 ~Ls~n~l~-~-lp~~l~~-l~~L~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~L 245 (567)
+|++|.+. + +...+.. -++|+.|+|+++. +..=.......++++|.+||||+|. ++. .-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777655 1 1111111 2467777777763 1111111122236777777777753 332 3334566677777777
Q ss_pred cCCCCCCCchhh---hcCCCCCcEEEccCC
Q psy12423 246 QSNSINILPQLF---LQNSSKLKVLNISKN 272 (567)
Q Consensus 246 s~N~l~~l~~~~---l~~l~~L~~L~Ls~N 272 (567)
+.|.. |++.. +...|+|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77642 33322 345667777776664
No 75
>KOG2120|consensus
Probab=97.82 E-value=4.2e-07 Score=87.15 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=120.9
Q ss_pred CCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccC-cccce-----ecCCCCCcE
Q psy12423 82 GELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN-QLKTL-----VLNGSSLIS 149 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n-~l~~l-----~~~~~~L~~ 149 (567)
..|++|||++..|+... .+..+.+|+.|.+.++++.+. .+..-.+|+.|+++.+ .+++. ..+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35899999998887543 567788999999999998873 4667788999999875 34432 356788999
Q ss_pred EEcCCCccccccCCCC----CCcccEEecccCC--C--CCcccccCCCcCCcEEECcCCC-CC-CCChhhhhccCCCccE
Q psy12423 150 VIAGNNKLQSLIVSPR----PARLQHLDISYNE--L--ESLPDWIDTCPELETIFASHNR-IT-QLPSQFFCRELGKLHT 219 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~--l--~~lp~~l~~l~~L~~L~Ls~N~-l~-~l~~~~~~~~l~~L~~ 219 (567)
|+++-|.+........ -++|+.|+|+++. + ..+.-....+++|..|||++|. ++ ..-..++. ++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchhee
Confidence 9999887765443322 5789999999873 2 2343345788999999999984 44 33334444 889999
Q ss_pred EECCCCCCCCCch---hhhCCCCCcEEEccCCC
Q psy12423 220 LQLSFNRLTSLPS---LIRQIASLKYLFLQSNS 249 (567)
Q Consensus 220 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~ 249 (567)
|.|+.|..- +|. .+...++|.+|++.++-
T Consensus 343 lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 999998632 222 35788999999998874
No 76
>KOG3665|consensus
Probab=97.42 E-value=4.4e-05 Score=84.84 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=69.8
Q ss_pred ccCcEEEcccCccc------ceecCCCCCcEEEcCCCccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEE
Q psy12423 125 NRLESIKCSRNQLK------TLVLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETI 195 (567)
Q Consensus 125 ~~L~~L~ls~n~l~------~l~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 195 (567)
.+|++|++++...- .+...+|+|++|.+.+-.+........ +++|..||+|+.+++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 36777777664322 112345667777666655433321111 56777777777777666 446667777777
Q ss_pred ECcCCCCCCCC--hhhhhccCCCccEEECCCCCCCCCch-------hhhCCCCCcEEEccCCCCC
Q psy12423 196 FASHNRITQLP--SQFFCRELGKLHTLQLSFNRLTSLPS-------LIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 196 ~Ls~N~l~~l~--~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~~~~l~~L~~L~Ls~N~l~ 251 (567)
.+.+=.+..-. ..+|. +++|+.||+|......-+. .-..+|.|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhc--ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66665555322 23454 6777777777654443221 1234666777777766655
No 77
>KOG2739|consensus
Probab=97.39 E-value=0.00011 Score=69.93 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCCccEEECCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch---hhhcCCCCCcEEEccCCcCCCCC
Q psy12423 214 LGKLHTLQLSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ---LFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 214 l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
+++|++|+|++|+|+.+.. .+..+++|..|++.+|..+.+.. .+|.-+++|++||-..-.=...|
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 3555555555555543211 13445556666666665554322 34556677776654443333444
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.24 E-value=0.00056 Score=59.35 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=48.6
Q ss_pred CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L 243 (567)
+.+|+.+.+.. .+..|+. .|..+++|+.+.+..+ +..++...|.. +++|+.+.+.. .+..++. .+..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~-~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSN-CKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeec-ccccccccccc-ccccccccccccccccccc
Confidence 34566666653 4555543 4566666666666554 66666666654 55666666654 4443333 34556666666
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
.+..+ +..++...|.++ .|+.+.+.. .++.|+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence 66554 666666666665 666666654 4455544
No 79
>KOG3665|consensus
Probab=97.19 E-value=0.00029 Score=78.43 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCCcEEEcCCCccccccC-C---CCCCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCc
Q psy12423 144 GSSLISVIAGNNKLQSLIV-S---PRPARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKL 217 (567)
Q Consensus 144 ~~~L~~L~l~~n~l~~~~~-~---~~~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L 217 (567)
..+|+.|++++...-.... . ..+|+|+.|.+++-.+. ++-....++++|..||+++.+++.+ .++.. +++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~--LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR--LKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc--cccH
Confidence 3678899998754321111 0 11899999999987665 3445567889999999999999988 34433 8999
Q ss_pred cEEECCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCchh------hhcCCCCCcEEEccCCcCC
Q psy12423 218 HTLQLSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQL------FLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 218 ~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~~------~l~~l~~L~~L~Ls~N~l~ 275 (567)
+.|.+.+=.+..-.. .+..+++|++||+|.......+.- ....+|.|+.||.|++.+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999888877765332 467899999999999876654421 1246899999999998765
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.00087 Score=58.14 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=59.9
Q ss_pred CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423 146 SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222 (567)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L 222 (567)
+|+.+.+.. .+..+....+ +.+|+.+.+.++ +..++. .|..+++|+.+.+.. .+..++...|.. +++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~-~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN-CTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT--TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc-ccccccccc
Confidence 455555542 4555555555 567888888774 777754 677777899999865 777777777765 788999998
Q ss_pred CCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc
Q psy12423 223 SFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265 (567)
Q Consensus 223 s~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~ 265 (567)
..+ +..++. .+.++ .|+.+.+.. .++.++...|.++++|+
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 765 666554 45665 889988876 77888888888888774
No 81
>KOG2123|consensus
Probab=97.13 E-value=2.5e-05 Score=74.56 Aligned_cols=80 Identities=24% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee-----cCCCCCcEEEcCC
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV-----LNGSSLISVIAGN 154 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~-----~~~~~L~~L~l~~ 154 (567)
+.+.+.|++-+|.+..+.....++.|+.|.|+-|.|+.+ ++..|++|++|+|..|.|..+. .++++|+.|.+..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 346788888899888877777889999999999999887 5888999999999999887764 3566666666666
Q ss_pred Cccccc
Q psy12423 155 NKLQSL 160 (567)
Q Consensus 155 n~l~~~ 160 (567)
|...+.
T Consensus 98 NPCc~~ 103 (388)
T KOG2123|consen 98 NPCCGE 103 (388)
T ss_pred CCcccc
Confidence 654443
No 82
>KOG2739|consensus
Probab=97.13 E-value=0.00027 Score=67.33 Aligned_cols=84 Identities=31% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC--CCC-CCchhhhCCCCCcEEEccCCCCC---CCchhhhcCC
Q psy12423 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN--RLT-SLPSLIRQIASLKYLFLQSNSIN---ILPQLFLQNS 261 (567)
Q Consensus 188 ~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N--~l~-~lp~~~~~l~~L~~L~Ls~N~l~---~l~~~~l~~l 261 (567)
.+..|+.|.+.+..++++...-+ +++|+.|.++.| .+. +++.....+++|++|++++|+|. .+++ +..+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~---Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPK---LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKEL 115 (260)
T ss_pred cccchhhhhhhccceeecccCCC---cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhh
Confidence 34455555555555554332222 667777777777 333 25544555677777777777766 3333 3456
Q ss_pred CCCcEEEccCCcCCC
Q psy12423 262 SKLKVLNISKNCLKM 276 (567)
Q Consensus 262 ~~L~~L~Ls~N~l~~ 276 (567)
.+|..|++.+|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 667777777776554
No 83
>KOG2123|consensus
Probab=96.88 E-value=5.6e-05 Score=72.19 Aligned_cols=97 Identities=26% Similarity=0.288 Sum_probs=45.8
Q ss_pred cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEEEc
Q psy12423 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYLFL 245 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L 245 (567)
+.+.|++-+|.|..|. ....++.|+.|.|+-|+|+.+.+..- +.+|++|+|..|.|.++.+ .+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~r---CtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQR---CTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHH---HHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444555555554432 23344555555555555555443221 4455555555555555443 2355555555555
Q ss_pred cCCCCCCC-ch----hhhcCCCCCcEEE
Q psy12423 246 QSNSINIL-PQ----LFLQNSSKLKVLN 268 (567)
Q Consensus 246 s~N~l~~l-~~----~~l~~l~~L~~L~ 268 (567)
..|.-.+- +. .++.-+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 55543311 11 1334556666553
No 84
>KOG4341|consensus
Probab=96.64 E-value=4.6e-05 Score=76.74 Aligned_cols=84 Identities=23% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCcccEEecccCCC-CCcc--cccCCCcCCcEEECcCCC-CCCCChhhhhccCCCccEEECCCCCCCC---CchhhhCCC
Q psy12423 166 PARLQHLDISYNEL-ESLP--DWIDTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTS---LPSLIRQIA 238 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l-~~lp--~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~ 238 (567)
+..|+.|+.+++.- +..+ ..-.+..+|+.|-++.++ ++...........+.|+.+++..+.... +-..-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44566666655532 2111 112345566666666653 4433333333335556666665554321 222224555
Q ss_pred CCcEEEccCCC
Q psy12423 239 SLKYLFLQSNS 249 (567)
Q Consensus 239 ~L~~L~Ls~N~ 249 (567)
.|+.|.|+++.
T Consensus 373 ~lr~lslshce 383 (483)
T KOG4341|consen 373 RLRVLSLSHCE 383 (483)
T ss_pred hhccCChhhhh
Confidence 66666666553
No 85
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=95.88 E-value=0.13 Score=53.50 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=69.2
Q ss_pred CceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEE
Q psy12423 361 LSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA 440 (567)
Q Consensus 361 ~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~ 440 (567)
...+++.....+... .+..+++|=--+++.+.++......=+...+++|... ...+.+....+.+ ++.+|+.
T Consensus 231 ~f~T~~~~~~d~~~~--~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~piG~~~-----~~~~~~~~~~l~~-gd~lvl~ 302 (367)
T COG2208 231 MFVTLFLGVYDLDSG--ELTYSNAGHEPALILSADGEIEVEDLTALGLPIGLLP-----DYQYEVASLQLEP-GDLLVLY 302 (367)
T ss_pred cEEEEEEEEEeccCC--EEEEeeCCCCCeeEEEcCCCceeEEccCCCceeeecC-----CccchheeEEecC-CCEEEEE
Confidence 445555554443322 6888999999998888766421112222445566443 2356677777888 5677899
Q ss_pred cCCCC-------------------------CHHHHHHHHHHHHHHcC----CCCCcEEEEEEeC
Q psy12423 441 NKSVS-------------------------EPVLAAKRIQDLAQSYG----SEDNLSVLVLRFQ 475 (567)
Q Consensus 441 sDGl~-------------------------~~~~~a~~l~~~a~~~g----~~dnit~~vv~~~ 475 (567)
|||+. .|+++++.+.+.....- -.|++|++++++.
T Consensus 303 tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 303 TDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred cCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 99998 45666666666655533 3477999999875
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0032 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=13.4
Q ss_pred CcEEEccCCCCCcCCccCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDS 20 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~ 20 (567)
|++|||++|+|++||++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 56777777777777665554
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0075 Score=34.70 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=13.5
Q ss_pred cccEEecccCCCCCcccccCC
Q psy12423 168 RLQHLDISYNELESLPDWIDT 188 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~ 188 (567)
+|++|+|++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366777777777766665543
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.91 E-value=0.015 Score=31.07 Aligned_cols=16 Identities=44% Similarity=0.737 Sum_probs=7.0
Q ss_pred CCcEEEccCCcCCCCC
Q psy12423 263 KLKVLNISKNCLKMLP 278 (567)
Q Consensus 263 ~L~~L~Ls~N~l~~ip 278 (567)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655554
No 89
>KOG4308|consensus
Probab=94.89 E-value=0.0004 Score=73.97 Aligned_cols=129 Identities=26% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCcEEEcCCCccccccCCCC------CCcccEEecccCCCC-----Cccccc----CCCcCCcEEECcCCCCCCCChh--
Q psy12423 146 SLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELE-----SLPDWI----DTCPELETIFASHNRITQLPSQ-- 208 (567)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~-----~lp~~l----~~l~~L~~L~Ls~N~l~~l~~~-- 208 (567)
.+++|.+..|.++....... ...++.++++.|.+. .++..+ ....++++|.+++|.++.-...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34445555555554443332 456777777777664 122233 3467888888888887722111
Q ss_pred --hhhccCCC-ccEEECCCCCCCC-----CchhhhCC-CCCcEEEccCCCCCCCch----hhhcCCCCCcEEEccCCcCC
Q psy12423 209 --FFCRELGK-LHTLQLSFNRLTS-----LPSLIRQI-ASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 209 --~~~~~l~~-L~~L~Ls~N~l~~-----lp~~~~~l-~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls~N~l~ 275 (567)
.... .+. +..|++..|.+.+ +.+.+..+ +.+++++++.|.|++-.. ..+..++.++++.+++|++.
T Consensus 225 ~~~l~~-~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 225 DEVLAS-GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhc-cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1111 333 6668888888774 23334445 677888888888874222 23356778888888888776
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.45 E-value=0.037 Score=33.18 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCCCCEEeCcCCCCCCCChhhhc
Q psy12423 21 FPRLKFLSAAQNRISHLPVFLRH 43 (567)
Q Consensus 21 l~~L~~L~Ls~n~i~~lp~~~~~ 43 (567)
+++|++|+|++|.|..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 56899999999999999988764
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.45 E-value=0.037 Score=33.18 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCCCCEEeCcCCCCCCCChhhhc
Q psy12423 21 FPRLKFLSAAQNRISHLPVFLRH 43 (567)
Q Consensus 21 l~~L~~L~Ls~n~i~~lp~~~~~ 43 (567)
+++|++|+|++|.|..+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 56899999999999999988764
No 92
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.024 Score=30.30 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=9.5
Q ss_pred CCCCEEeCcCCCCCCCC
Q psy12423 22 PRLKFLSAAQNRISHLP 38 (567)
Q Consensus 22 ~~L~~L~Ls~n~i~~lp 38 (567)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46777888887777665
No 93
>KOG4308|consensus
Probab=93.85 E-value=0.00067 Score=72.30 Aligned_cols=59 Identities=31% Similarity=0.353 Sum_probs=27.5
Q ss_pred ccEEecccCCCCC-----cccccCCC-cCCcEEECcCCCCCCC-----ChhhhhccCCCccEEECCCCCCCC
Q psy12423 169 LQHLDISYNELES-----LPDWIDTC-PELETIFASHNRITQL-----PSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 169 L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+..|++..|.+.. +...+..+ ..+++++++.|.|+.- ...+.. ++.+++|.++.|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~--~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS--CRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh--hHHHHHhhcccCcccc
Confidence 4445555555542 12233333 4555666666655522 122222 3455666666665553
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.80 E-value=0.057 Score=32.34 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=10.8
Q ss_pred CCCcEEEccCCCCCCCchhhh
Q psy12423 238 ASLKYLFLQSNSINILPQLFL 258 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l 258 (567)
++|+.|+|++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.80 E-value=0.057 Score=32.34 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=10.8
Q ss_pred CCCcEEEccCCCCCCCchhhh
Q psy12423 238 ASLKYLFLQSNSINILPQLFL 258 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l 258 (567)
++|+.|+|++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 96
>KOG0473|consensus
Probab=92.59 E-value=0.0038 Score=58.48 Aligned_cols=93 Identities=22% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhh
Q psy12423 180 ESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFL 258 (567)
Q Consensus 180 ~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l 258 (567)
+++|- .+......+.||++.|++-.+...+.. +..|..|+++.|.+.-+|..+.....+..+++..|..+..|...
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~--~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~- 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSI--LTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ- 107 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHH--HHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-
Confidence 34542 355566777788888877766554433 66777888888888888887777777788888888888777753
Q ss_pred cCCCCCcEEEccCCcCC
Q psy12423 259 QNSSKLKVLNISKNCLK 275 (567)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~ 275 (567)
...+.++++++-+|.|.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 67788888888777643
No 97
>KOG0473|consensus
Probab=91.53 E-value=0.0058 Score=57.31 Aligned_cols=84 Identities=19% Similarity=0.076 Sum_probs=72.9
Q ss_pred CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 245 (567)
....+.||++.|++..+-..|+-++.|..|+++.|.+..+|..... ...+..+++..|..+..|.++...+.++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q--~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQ--QRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHH--HHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 5678889999998887777788888999999999999999888765 67788899999999999999999999999999
Q ss_pred cCCCCC
Q psy12423 246 QSNSIN 251 (567)
Q Consensus 246 s~N~l~ 251 (567)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 998865
No 98
>KOG0699|consensus
Probab=91.26 E-value=0.25 Score=49.08 Aligned_cols=61 Identities=13% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCccccCCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHhh
Q psy12423 294 LPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKET-ASDYMKYTMLTAHREIKD 354 (567)
Q Consensus 294 ~~~~~~~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~-~~~~l~~a~l~~n~~i~~ 354 (567)
...|...-++|+++|||++.+++.+.+..+|.++.+....+.. ...++..+|+.++..+..
T Consensus 43 i~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k~yk~g~~~~aL~~AFl~fD~~l~~ 104 (542)
T KOG0699|consen 43 IVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERKFYKAGDVAEALQKAFLDFDDFLRA 104 (542)
T ss_pred cccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHHhhhcccHHHHHHHHHhchhhhhcC
Confidence 3444555789999999999999999999999999998877654 489999999999885543
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.39 E-value=0.46 Score=28.41 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=15.1
Q ss_pred CCCcEEEccCCcCCCCCC
Q psy12423 262 SKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 262 ~~L~~L~Ls~N~l~~ip~ 279 (567)
++|+.|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468888999999998886
No 100
>KOG3864|consensus
Probab=84.81 E-value=0.27 Score=45.51 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=16.5
Q ss_pred cccEEecccCCCCCc-ccccCCCcCCcEEECcCC
Q psy12423 168 RLQHLDISYNELESL-PDWIDTCPELETIFASHN 200 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N 200 (567)
.++.+|-++..|... -+.+..++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 455566665555422 133445555555555544
No 101
>KOG4341|consensus
Probab=84.75 E-value=0.12 Score=52.82 Aligned_cols=195 Identities=17% Similarity=0.095 Sum_probs=106.9
Q ss_pred CCCCCccEEEecCCC-CCCcc---ccCCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccC-ccccee-----cC
Q psy12423 79 EVKGELTSVNLRSNQ-LKGTI---ILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRN-QLKTLV-----LN 143 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n-~l~~l~-----~~ 143 (567)
..+++|++|+++.+. +++.. ...++..++.+.+.+|.=.+.. -..+..+..+++..+ .++... ..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 346677777777663 33211 3444555666655544211110 112223334443332 333322 33
Q ss_pred CCCCcEEEcCCCcc-ccccCCCC---CCcccEEecccCC-CCCc--ccccCCCcCCcEEECcCCCCCCCC-hhhhhccCC
Q psy12423 144 GSSLISVIAGNNKL-QSLIVSPR---PARLQHLDISYNE-LESL--PDWIDTCPELETIFASHNRITQLP-SQFFCRELG 215 (567)
Q Consensus 144 ~~~L~~L~l~~n~l-~~~~~~~~---~~~L~~L~Ls~n~-l~~l--p~~l~~l~~L~~L~Ls~N~l~~l~-~~~~~~~l~ 215 (567)
+..|+.|..+++.- +......+ ..+|+.|.++.++ ++.. ...-.+++.|+.+++..+....-. ........+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 55677777665432 22211111 6788888888875 3322 112246678888888888654211 111112277
Q ss_pred CccEEECCCCCC-CC-----CchhhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEccCCc
Q psy12423 216 KLHTLQLSFNRL-TS-----LPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 216 ~L~~L~Ls~N~l-~~-----lp~~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
.|+.|.|+++.+ ++ +...-..+..|..+.|+++... +-.-..+..+++|+.+++-+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 899999998753 32 2333456778889999998654 4444456788888888887765
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.69 E-value=1.2 Score=26.78 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.3
Q ss_pred CCCCCEEeCcCCCCCCCC
Q psy12423 21 FPRLKFLSAAQNRISHLP 38 (567)
Q Consensus 21 l~~L~~L~Ls~n~i~~lp 38 (567)
+.+|+.|+|+.|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 468999999999998764
No 103
>KOG1947|consensus
Probab=81.38 E-value=0.9 Score=48.66 Aligned_cols=107 Identities=25% Similarity=0.238 Sum_probs=47.7
Q ss_pred CcccEEecccC-CCCC--cccccCCCcCCcEEECcCC--CCCCCC---hhhhhccCCCccEEECCCCC-CCC--Cchhhh
Q psy12423 167 ARLQHLDISYN-ELES--LPDWIDTCPELETIFASHN--RITQLP---SQFFCRELGKLHTLQLSFNR-LTS--LPSLIR 235 (567)
Q Consensus 167 ~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~Ls~N--~l~~l~---~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~ 235 (567)
+.|+.|.+..+ .+.. +-.....++.|+.|+++++ .+...+ ...... +++|+.|+++.+. ++. +.....
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh-cCCcCccchhhhhccCchhHHHHHh
Confidence 44555555544 2222 2233445556666666552 111111 111111 4556666666654 443 112223
Q ss_pred CCCCCcEEEccCCC-CCCCc-hhhhcCCCCCcEEEccCCcC
Q psy12423 236 QIASLKYLFLQSNS-INILP-QLFLQNSSKLKVLNISKNCL 274 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~-l~~l~-~~~l~~l~~L~~L~Ls~N~l 274 (567)
.+++|+.|.+.++. ++... ..+...++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35566666655554 44211 12234556666666665543
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.24 E-value=1.2 Score=26.59 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=7.5
Q ss_pred CccEEECCCCCCCCCch
Q psy12423 216 KLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 216 ~L~~L~Ls~N~l~~lp~ 232 (567)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34444444444444443
No 105
>KOG1947|consensus
Probab=77.24 E-value=1.3 Score=47.43 Aligned_cols=127 Identities=24% Similarity=0.197 Sum_probs=80.0
Q ss_pred CCCCcEEEcCCC-cccccc--CCCC-CCcccEEecccC--CCCCcc----cccCCCcCCcEEECcCCC-CCCCChhhhhc
Q psy12423 144 GSSLISVIAGNN-KLQSLI--VSPR-PARLQHLDISYN--ELESLP----DWIDTCPELETIFASHNR-ITQLPSQFFCR 212 (567)
Q Consensus 144 ~~~L~~L~l~~n-~l~~~~--~~~~-~~~L~~L~Ls~n--~l~~lp----~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~ 212 (567)
.+.|+.|.+..+ .++... +... .+.|+.|+++++ .+...+ .....+++|+.|+++++. ++.........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 567777766655 333311 2222 788999999873 222111 234556889999999988 66555444433
Q ss_pred cCCCccEEECCCCC-CCC--CchhhhCCCCCcEEEccCCCCC---CCchhhhcCCCCCcEEEccC
Q psy12423 213 ELGKLHTLQLSFNR-LTS--LPSLIRQIASLKYLFLQSNSIN---ILPQLFLQNSSKLKVLNISK 271 (567)
Q Consensus 213 ~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N~l~---~l~~~~l~~l~~L~~L~Ls~ 271 (567)
.+++|+.|.+.++. ++. +-.....++.|++|+|+++... .+... ..++++|+.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh
Confidence 37899999988776 664 4455677888999999988643 13333 34577766655433
No 106
>KOG3763|consensus
Probab=73.09 E-value=2.3 Score=45.38 Aligned_cols=63 Identities=30% Similarity=0.339 Sum_probs=36.8
Q ss_pred CCcCCcEEECcCCCCCCCChh--hhhccCCCccEEECCCC--CCCCCchhh-hCCCCCcEEEccCCCCC
Q psy12423 188 TCPELETIFASHNRITQLPSQ--FFCRELGKLHTLQLSFN--RLTSLPSLI-RQIASLKYLFLQSNSIN 251 (567)
Q Consensus 188 ~l~~L~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~Ls~N--~l~~lp~~~-~~l~~L~~L~Ls~N~l~ 251 (567)
+.+.+..++|++|++..+..- +... .|+|+.|+|++| .+..-++.- -....|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~-apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQI-APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHh-cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 456677777777776644321 1111 677888888887 444322210 12345777888888776
No 107
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.72 E-value=1.9 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=11.1
Q ss_pred CCCCCEEeCcCCCCCC
Q psy12423 21 FPRLKFLSAAQNRISH 36 (567)
Q Consensus 21 l~~L~~L~Ls~n~i~~ 36 (567)
+++|++|+|++|.|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4789999999998763
No 108
>KOG3763|consensus
Probab=71.62 E-value=1.7 Score=46.20 Aligned_cols=63 Identities=27% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCcccEEecccCCCCCcc---cccCCCcCCcEEECcCC--CCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 166 PARLQHLDISYNELESLP---DWIDTCPELETIFASHN--RITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
.+.+..+.|++|++..+. ..-...|+|++|+|++| .+...+..- ......|++|.|.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCcccc
Confidence 457788888998887553 23345688999999999 444322211 1115578999999998874
No 109
>KOG3864|consensus
Probab=64.41 E-value=1.3 Score=41.13 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=14.7
Q ss_pred CcEEEcCCCccccccCCCC--CCcccEEecccC
Q psy12423 147 LISVIAGNNKLQSLIVSPR--PARLQHLDISYN 177 (567)
Q Consensus 147 L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n 177 (567)
++.++.++..|.......+ ++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 4445555555444443333 444555554444
No 110
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.05 E-value=8.5 Score=23.35 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=9.9
Q ss_pred CCCcEEEccCCcCC
Q psy12423 262 SKLKVLNISKNCLK 275 (567)
Q Consensus 262 ~~L~~L~Ls~N~l~ 275 (567)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777765
No 111
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.09 E-value=10 Score=48.31 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.6
Q ss_pred ECCCCCCCCCch-hhhCCCCCcEEEccCCCCC
Q psy12423 221 QLSFNRLTSLPS-LIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 221 ~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~ 251 (567)
||++|+|+.||. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 577888888776 4677778888888888766
No 112
>KOG4242|consensus
Probab=35.62 E-value=1.6e+02 Score=31.45 Aligned_cols=244 Identities=19% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCEEeCcCCCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc--
Q psy12423 22 PRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-- 98 (567)
Q Consensus 22 ~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-- 98 (567)
+.+++++++.|.+. ..|..+...--.+..-.+-........+....... .+.+++|+.|.....+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~------------~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRL------------WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccc------------cccccccccCCCCccchh
Q ss_pred ---ccCCCCCccEEEccCCCCCC------CCCcccccCcEEEcccCccc------------ceecCCCCCcEEEcCCCcc
Q psy12423 99 ---ILGNYGNLTTLDVSENSIES------LDLGALNRLESIKCSRNQLK------------TLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 99 ---~l~~l~~L~~L~L~~n~l~~------~~~~~l~~L~~L~ls~n~l~------------~l~~~~~~L~~L~l~~n~l 157 (567)
....-..++.++.+...+.- +..+.-++|...+++.|... +....-.++ .|++..+..
T Consensus 233 ~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ 311 (553)
T KOG4242|consen 233 TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT 311 (553)
T ss_pred HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Q ss_pred ccccCCCC--------CCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCCC
Q psy12423 158 QSLIVSPR--------PARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNR 226 (567)
Q Consensus 158 ~~~~~~~~--------~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~ 226 (567)
........ ...=-.+|+..|... +.-+.-..=..+++|.+..|.+. +.....-...-+.++.+++..-.
T Consensus 312 psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~ 391 (553)
T KOG4242|consen 312 PSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSG 391 (553)
T ss_pred chhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccC
Q ss_pred CCCCchhh----------hCCCCCcEEEccCCCCC---CCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423 227 LTSLPSLI----------RQIASLKYLFLQSNSIN---ILPQLFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 227 l~~lp~~~----------~~l~~L~~L~Ls~N~l~---~l~~~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
-..+-..- ...--+..+.++.|.+. +--...+..-+.+..|++++|.....+
T Consensus 392 ~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 392 DKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGG 456 (553)
T ss_pred CceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCC
No 113
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=35.01 E-value=54 Score=32.41 Aligned_cols=13 Identities=23% Similarity=0.329 Sum_probs=10.8
Q ss_pred CCeEEEEEcCCCC
Q psy12423 433 NDHFLILANKSVS 445 (567)
Q Consensus 433 ~d~~lil~sDGl~ 445 (567)
+|+.|++|.||.|
T Consensus 52 ~~~~lliaadGi~ 64 (324)
T COG2144 52 GDGKLLIAADGIW 64 (324)
T ss_pred CCcEEEEecCCcc
Confidence 3678889999999
No 114
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=29.32 E-value=30 Score=26.48 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=10.7
Q ss_pred ecCCCeEEEEEcCCCC
Q psy12423 430 LHENDHFLILANKSVS 445 (567)
Q Consensus 430 l~~~d~~lil~sDGl~ 445 (567)
+...++-+++|+||+|
T Consensus 23 l~~~G~Rllva~nGv~ 38 (72)
T PF09436_consen 23 LERPGHRLLVASNGVF 38 (72)
T ss_pred cccCCcEEEEecCcEE
Confidence 3433444557999999
No 115
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.74 E-value=40 Score=19.78 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.1
Q ss_pred CCCCCEEeCcCCC-CC
Q psy12423 21 FPRLKFLSAAQNR-IS 35 (567)
Q Consensus 21 l~~L~~L~Ls~n~-i~ 35 (567)
+++|++|+|++|. |+
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4789999999985 54
No 116
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.75 E-value=41 Score=43.41 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=18.7
Q ss_pred ECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 196 ~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
||++|+|+.|+...|.. +++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~-L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICAN-LCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhcc-CCCceEEEeeCCccc
Confidence 35566666666665554 556666666666544
No 117
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=25.26 E-value=2.2e+02 Score=21.87 Aligned_cols=36 Identities=6% Similarity=0.163 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 436 FLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 436 ~lil~sDGl~~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
.++-++| |+++|-+++.++|.+.|+.- |+-++++-+
T Consensus 19 iv~~~~~---d~d~Al~eM~e~A~~lGAnA---VVGvr~d~s 54 (74)
T TIGR03884 19 IVSTESD---NVDEIVENLREKVKAKGGMG---LIAFRITCA 54 (74)
T ss_pred EEEEecC---CHHHHHHHHHHHHHHcCCCE---EEEEEEEcC
Confidence 4445566 99999999999999999853 677777643
No 118
>COG1160 Predicted GTPases [General function prediction only]
Probab=23.94 E-value=2.6e+02 Score=29.67 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCccCCCceEEEEecCCCeEEEEEcCCCC--CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC--CCcChhhHHHHHhhh
Q psy12423 416 CPLSFPDPHVTEVMLHENDHFLILANKSVS--EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG--SEFDSRTRDAKLSSM 491 (567)
Q Consensus 416 ~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~--~~~~~~~~~~~~~~~ 491 (567)
.|+++-++-....++.+. +|.|+-|-|++ +.+...+.+.+.|+..-.+-++-+.||+-+. .+.|+...+.-. ..
T Consensus 34 ~pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~ 111 (444)
T COG1160 34 TPGVTRDRIYGDAEWLGR-EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RS 111 (444)
T ss_pred CCCCccCCccceeEEcCc-eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hc
Confidence 467777888888888876 49999999999 4567888899999988888889899998872 444555444432 34
Q ss_pred cCC
Q psy12423 492 RKL 494 (567)
Q Consensus 492 ~~~ 494 (567)
+||
T Consensus 112 ~kp 114 (444)
T COG1160 112 KKP 114 (444)
T ss_pred CCC
Confidence 566
No 119
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=22.34 E-value=3.4e+02 Score=25.06 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCCHHHH-HHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423 434 DHFLILANKSVSEPVLA-AKRIQDLAQSYGSEDNLSVLVLRFQ 475 (567)
Q Consensus 434 d~~lil~sDGl~~~~~~-a~~l~~~a~~~g~~dnit~~vv~~~ 475 (567)
...+|+-|||.++.... -+.|++.|.+....+.|++.+|.+.
T Consensus 108 ~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG 150 (199)
T cd01457 108 GETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIG 150 (199)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeC
Confidence 47888999999954433 4455565554444477999999885
Done!