Query psy12423
Match_columns 567
No_of_seqs 797 out of 4630
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 18:57:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 100.0 2.8E-29 9.4E-34 262.0 25.2 280 1-300 71-354 (390)
2 3v47_A TOLL-like receptor 5B a 100.0 8.8E-30 3E-34 271.1 21.6 287 1-301 32-411 (455)
3 2id5_A Lingo-1, leucine rich r 100.0 2.7E-29 9.1E-34 269.2 24.4 292 1-306 34-341 (477)
4 3oja_B Anopheles plasmodium-re 100.0 1.7E-28 5.9E-33 270.2 25.3 280 1-300 77-360 (597)
5 4fmz_A Internalin; leucine ric 100.0 6.4E-28 2.2E-32 247.4 27.5 274 1-297 46-345 (347)
6 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-28 1.8E-32 264.6 25.1 281 1-300 54-488 (562)
7 1xku_A Decorin; proteoglycan, 100.0 5.1E-27 1.8E-31 239.1 27.0 257 1-275 33-306 (330)
8 2id5_A Lingo-1, leucine rich r 100.0 1.3E-27 4.3E-32 256.1 23.3 262 1-276 58-334 (477)
9 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4.1E-32 259.1 23.0 162 166-330 323-497 (520)
10 3v47_A TOLL-like receptor 5B a 100.0 1.3E-27 4.3E-32 254.4 22.6 267 1-278 56-412 (455)
11 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-28 2.3E-32 266.1 21.1 164 166-330 398-573 (606)
12 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-27 1.6E-31 239.6 24.0 257 1-275 35-307 (332)
13 4eco_A Uncharacterized protein 100.0 7.3E-28 2.5E-32 267.0 19.3 279 1-292 208-543 (636)
14 1o6v_A Internalin A; bacterial 100.0 1.3E-26 4.5E-31 247.6 28.1 213 79-299 174-389 (466)
15 3o6n_A APL1; leucine-rich repe 100.0 2.2E-27 7.6E-32 247.6 21.3 278 1-300 47-333 (390)
16 4ecn_A Leucine-rich repeat pro 100.0 5.5E-27 1.9E-31 265.6 26.0 296 1-298 450-819 (876)
17 4ecn_A Leucine-rich repeat pro 100.0 1.4E-27 4.7E-32 270.5 20.5 295 1-298 493-840 (876)
18 4fmz_A Internalin; leucine ric 100.0 1.2E-26 4.1E-31 237.9 25.3 257 18-298 40-300 (347)
19 1o6v_A Internalin A; bacterial 100.0 1E-26 3.4E-31 248.5 25.5 271 1-296 48-342 (466)
20 3g06_A SSPH2 (leucine-rich rep 100.0 2E-26 6.8E-31 252.8 28.2 257 1-299 42-298 (622)
21 3t6q_A CD180 antigen; protein- 99.9 1.4E-26 4.8E-31 255.4 26.8 280 1-295 35-386 (606)
22 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-26 3.8E-31 251.5 25.3 111 187-300 321-436 (520)
23 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-27 1.2E-31 260.1 21.7 178 124-303 375-563 (606)
24 4eco_A Uncharacterized protein 99.9 7.8E-28 2.7E-32 266.8 16.3 285 1-300 251-581 (636)
25 3t6q_A CD180 antigen; protein- 99.9 1.3E-26 4.3E-31 255.8 25.9 286 1-299 59-414 (606)
26 1ziw_A TOLL-like receptor 3; i 99.9 5.4E-27 1.8E-31 262.4 23.1 291 1-297 250-596 (680)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-26 3.7E-31 259.9 25.2 220 82-302 381-626 (680)
28 4g8a_A TOLL-like receptor 4; l 99.9 8.7E-27 3E-31 257.8 23.2 334 1-347 54-612 (635)
29 2z81_A CD282 antigen, TOLL-lik 99.9 1E-26 3.5E-31 253.4 23.4 133 166-300 333-488 (549)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-26 1.9E-30 248.6 27.7 280 2-300 34-465 (562)
31 3rgz_A Protein brassinosteroid 99.9 3.1E-27 1E-31 267.8 18.2 299 1-300 320-719 (768)
32 3oja_B Anopheles plasmodium-re 99.9 9.4E-27 3.2E-31 256.4 21.3 279 1-300 53-339 (597)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-25 5.6E-30 238.0 29.6 270 1-299 44-353 (457)
34 1xku_A Decorin; proteoglycan, 99.9 4.5E-26 1.5E-30 232.1 24.2 256 1-273 54-330 (330)
35 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-26 7.7E-31 250.7 21.2 169 123-300 332-512 (549)
36 2z63_A TOLL-like receptor 4, v 99.9 2.7E-26 9.1E-31 251.1 21.3 154 145-299 347-532 (570)
37 2ft3_A Biglycan; proteoglycan, 99.9 6E-26 2.1E-30 231.4 21.7 255 1-273 56-331 (332)
38 3rgz_A Protein brassinosteroid 99.9 6.2E-26 2.1E-30 257.0 22.2 297 1-298 202-527 (768)
39 2z63_A TOLL-like receptor 4, v 99.9 9.2E-26 3.2E-30 246.8 21.5 129 166-296 346-481 (570)
40 3zyj_A Leucine-rich repeat-con 99.9 2.8E-25 9.6E-30 235.5 24.3 218 83-303 65-297 (440)
41 2z66_A Variable lymphocyte rec 99.9 6.5E-26 2.2E-30 228.4 18.5 238 2-299 10-262 (306)
42 2z80_A TOLL-like receptor 2, v 99.9 5.7E-26 1.9E-30 233.7 17.9 258 3-300 35-316 (353)
43 2p8e_A PPM1B beta isoform vari 99.9 3.8E-26 1.3E-30 229.9 16.2 173 301-477 55-300 (307)
44 1jl5_A Outer protein YOPM; leu 99.9 5.6E-25 1.9E-29 233.8 26.0 224 22-276 131-371 (454)
45 3zyi_A Leucine-rich repeat-con 99.9 3.9E-25 1.3E-29 235.2 24.3 218 83-303 76-308 (452)
46 3j0a_A TOLL-like receptor 5; m 99.9 5E-26 1.7E-30 260.4 18.6 283 1-302 268-564 (844)
47 3bz5_A Internalin-J, INLJ; leu 99.9 2E-24 6.8E-29 229.7 28.8 251 1-278 66-355 (457)
48 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-25 9.6E-30 254.2 23.7 265 1-279 26-379 (844)
49 3qn1_B Protein phosphatase 2C 99.9 7.3E-26 2.5E-30 230.5 16.5 173 301-477 62-330 (337)
50 4g8a_A TOLL-like receptor 4; l 99.9 8.8E-25 3E-29 241.7 25.0 290 1-303 78-585 (635)
51 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.1E-31 235.1 8.0 248 4-293 15-270 (317)
52 3kdj_B Protein phosphatase 2C 99.9 1.6E-25 5.4E-30 226.3 15.7 172 301-477 52-307 (316)
53 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.6E-29 235.7 26.8 236 1-276 63-298 (622)
54 1jl5_A Outer protein YOPM; leu 99.9 5.2E-24 1.8E-28 226.3 27.8 276 1-299 73-371 (454)
55 1a6q_A Phosphatase 2C; catalyt 99.9 4.3E-25 1.5E-29 227.7 18.2 171 301-475 53-292 (382)
56 1ogq_A PGIP-2, polygalacturona 99.9 1E-25 3.5E-30 227.9 13.2 212 82-296 76-302 (313)
57 2i0o_A Ser/Thr phosphatase; be 99.9 2.3E-25 8E-30 223.9 15.1 171 301-475 51-304 (304)
58 3zyj_A Leucine-rich repeat-con 99.9 2.4E-24 8.2E-29 228.3 22.8 233 3-275 47-292 (440)
59 2iq1_A Protein phosphatase 2C 99.9 6.5E-25 2.2E-29 217.3 16.8 172 301-476 35-263 (274)
60 3d8k_A PP2C, protein phosphata 99.9 6.8E-25 2.3E-29 225.6 17.1 172 301-476 48-325 (377)
61 3zyi_A Leucine-rich repeat-con 99.9 4.5E-24 1.5E-28 227.0 23.2 233 3-275 58-303 (452)
62 3oja_A Leucine-rich immune mol 99.9 1.6E-25 5.5E-30 240.1 12.0 238 13-292 21-269 (487)
63 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-24 2.1E-28 211.7 22.2 215 2-275 14-238 (285)
64 2z66_A Variable lymphocyte rec 99.9 1.9E-24 6.5E-29 217.6 18.5 230 83-333 29-279 (306)
65 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-26 2.2E-30 229.7 7.4 228 1-272 36-272 (317)
66 4fcg_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 218.1 18.9 204 82-296 104-312 (328)
67 2isn_A NYSGXRC-8828Z, phosphat 99.9 2.4E-24 8.3E-29 220.9 15.9 173 301-477 43-335 (364)
68 2irm_A Mitogen-activated prote 99.9 1.1E-24 3.7E-29 223.7 12.7 171 301-475 50-356 (358)
69 4da1_A Protein phosphatase 1K, 99.9 3.6E-24 1.2E-28 222.0 15.9 172 301-476 149-377 (389)
70 1p9a_G Platelet glycoprotein I 99.9 3.1E-23 1.1E-27 207.2 22.0 200 102-302 8-212 (290)
71 2pnq_A [pyruvate dehydrogenase 99.9 1.8E-24 6E-29 228.1 13.2 171 301-475 66-455 (467)
72 2i44_A Serine-threonine phosph 99.9 3.4E-24 1.2E-28 217.6 14.7 171 301-477 53-323 (324)
73 2j4o_A Mitogen-activated prote 99.9 2E-24 6.7E-29 224.6 12.3 172 301-476 62-367 (401)
74 4fcg_A Uncharacterized protein 99.9 2.3E-23 7.7E-28 212.0 19.7 199 81-300 80-292 (328)
75 2z62_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 205.1 20.1 214 3-275 11-237 (276)
76 2z80_A TOLL-like receptor 2, v 99.9 2.5E-23 8.5E-28 213.9 18.5 242 19-300 28-292 (353)
77 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.1E-29 230.7 10.5 226 1-270 36-270 (487)
78 1ozn_A Reticulon 4 receptor; N 99.9 1E-22 3.4E-27 202.9 19.5 199 83-302 33-242 (285)
79 1wwl_A Monocyte differentiatio 99.9 1.4E-24 4.7E-29 219.5 5.6 240 18-297 39-308 (312)
80 2o6q_A Variable lymphocyte rec 99.9 6.3E-22 2.2E-26 195.6 23.4 193 23-275 17-218 (270)
81 1wwl_A Monocyte differentiatio 99.9 2.7E-24 9.1E-29 217.3 5.1 214 81-301 42-290 (312)
82 2pk0_A Serine/threonine protei 99.9 4.4E-22 1.5E-26 194.4 17.6 168 301-478 34-249 (250)
83 1p9a_G Platelet glycoprotein I 99.9 9.3E-22 3.2E-26 196.5 20.1 198 17-275 5-208 (290)
84 1txo_A Putative bacterial enzy 99.9 7.5E-22 2.6E-26 191.2 17.2 164 301-475 28-236 (237)
85 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.7E-26 197.8 18.1 194 80-280 39-235 (308)
86 2o6q_A Variable lymphocyte rec 99.9 6.1E-21 2.1E-25 188.5 22.9 197 83-301 17-221 (270)
87 1ogq_A PGIP-2, polygalacturona 99.9 6E-22 2.1E-26 200.1 13.5 215 82-300 50-283 (313)
88 2xwt_C Thyrotropin receptor; s 99.9 8.8E-22 3E-26 190.8 13.3 97 171-272 134-236 (239)
89 2j82_A TPPHA, protein serine-t 99.9 5.6E-21 1.9E-25 185.4 18.6 162 303-474 29-240 (240)
90 4ay9_X Follicle-stimulating ho 99.9 8.4E-21 2.9E-25 194.8 19.6 233 2-298 12-259 (350)
91 2z62_A TOLL-like receptor 4, v 99.9 1.2E-20 4.2E-25 186.8 19.5 196 83-301 29-240 (276)
92 3rnr_A Stage II sporulation E 99.9 1.5E-20 5.1E-25 178.4 18.5 159 301-474 10-211 (211)
93 1h6u_A Internalin H; cell adhe 99.9 9.3E-21 3.2E-25 190.9 17.1 206 87-300 24-232 (308)
94 3rfs_A Internalin B, repeat mo 99.8 8.3E-21 2.9E-25 187.7 15.9 175 100-275 37-218 (272)
95 3rfs_A Internalin B, repeat mo 99.8 7.7E-21 2.6E-25 188.0 15.6 199 79-285 38-246 (272)
96 1z7x_W Ribonuclease inhibitor; 99.8 7E-23 2.4E-27 218.0 0.6 260 1-275 30-354 (461)
97 2jfr_A Ser-Thr phosphatase MSP 99.8 1.9E-20 6.7E-25 180.8 16.3 159 301-474 29-233 (234)
98 3cvr_A Invasion plasmid antige 99.8 2.6E-20 8.8E-25 202.0 17.8 184 83-279 81-278 (571)
99 3cvr_A Invasion plasmid antige 99.8 3.3E-20 1.1E-24 201.1 17.0 177 83-275 60-243 (571)
100 2xwt_C Thyrotropin receptor; s 99.8 2.9E-20 1E-24 180.0 14.6 199 8-248 20-236 (239)
101 3m19_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 176.6 19.5 173 83-277 15-194 (251)
102 4glp_A Monocyte differentiatio 99.8 1E-20 3.4E-25 190.8 11.5 211 83-298 65-307 (310)
103 3goz_A Leucine-rich repeat-con 99.8 4.8E-21 1.6E-25 197.6 7.7 241 3-276 2-298 (362)
104 2ca6_A RAN GTPase-activating p 99.8 1.9E-21 6.3E-26 202.4 4.1 231 13-278 23-319 (386)
105 4ay9_X Follicle-stimulating ho 99.8 3.8E-20 1.3E-24 189.9 13.8 192 83-293 31-234 (350)
106 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-22 4.9E-27 215.6 -6.8 286 1-298 5-354 (461)
107 4glp_A Monocyte differentiatio 99.8 4.5E-20 1.5E-24 186.1 11.2 192 81-276 90-308 (310)
108 2ca6_A RAN GTPase-activating p 99.8 3.4E-21 1.2E-25 200.4 2.8 243 1-269 34-337 (386)
109 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 169.8 19.8 174 126-300 15-194 (251)
110 1h6t_A Internalin B; cell adhe 99.8 5E-19 1.7E-23 176.7 16.1 172 81-279 45-217 (291)
111 3goz_A Leucine-rich repeat-con 99.8 7.9E-20 2.7E-24 188.4 7.4 219 82-300 22-299 (362)
112 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.2E-23 171.4 14.5 156 77-257 63-219 (291)
113 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.5E-23 189.8 13.5 173 80-279 41-214 (605)
114 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.7E-24 184.3 4.3 193 81-279 92-310 (336)
115 3e6j_A Variable lymphocyte rec 99.7 2.2E-17 7.5E-22 158.8 17.1 148 128-276 22-173 (229)
116 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 6E-22 158.5 15.7 146 129-275 15-165 (220)
117 2xot_A Amphoterin-induced prot 99.7 8.8E-18 3E-22 173.0 14.5 137 166-303 63-207 (361)
118 1m9s_A Internalin B; cell inva 99.7 6.8E-18 2.3E-22 184.8 13.3 195 22-257 21-216 (605)
119 2v9t_B SLIT homolog 2 protein 99.7 5.3E-18 1.8E-22 162.0 10.4 155 147-303 13-170 (220)
120 2o6s_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 154.9 14.6 109 166-282 75-186 (208)
121 2xot_A Amphoterin-induced prot 99.7 1E-17 3.6E-22 172.5 12.0 169 106-275 20-202 (361)
122 2v70_A SLIT-2, SLIT homolog 2 99.7 5.8E-17 2E-21 154.8 15.4 109 166-275 56-166 (220)
123 1xeu_A Internalin C; cellular 99.7 1E-17 3.4E-22 164.7 9.3 171 81-279 18-189 (263)
124 4ezg_A Putative uncharacterize 99.7 5E-17 1.7E-21 152.4 13.0 152 100-275 40-194 (197)
125 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-16 3.4E-21 153.1 15.2 154 148-303 14-171 (220)
126 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.5E-22 161.9 10.5 155 77-257 36-191 (263)
127 2o6s_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 147.4 17.2 146 129-275 11-161 (208)
128 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 149.7 16.9 154 145-301 19-175 (229)
129 1dce_A Protein (RAB geranylger 99.7 1E-19 3.5E-24 198.0 -9.8 109 168-280 442-551 (567)
130 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.8E-22 169.4 6.2 237 2-258 50-313 (336)
131 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.3E-24 196.6 -9.4 188 79-269 346-567 (567)
132 3ogk_B Coronatine-insensitive 99.7 7E-18 2.4E-22 185.2 3.5 195 79-275 267-501 (592)
133 3ogk_B Coronatine-insensitive 99.7 9.9E-18 3.4E-22 183.9 3.1 290 1-293 194-546 (592)
134 4ezg_A Putative uncharacterize 99.7 5.9E-16 2E-20 145.1 13.1 150 79-252 41-195 (197)
135 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 139.0 12.9 134 145-280 24-165 (168)
136 2wfh_A SLIT homolog 2 protein 99.6 2.5E-15 8.5E-20 140.4 13.7 124 150-275 15-139 (193)
137 3sb4_A Hypothetical leucine ri 99.6 9E-16 3.1E-20 155.8 8.7 89 189-280 225-315 (329)
138 1a9n_A U2A', U2A'; complex (nu 99.6 3E-15 1E-19 137.6 9.6 130 144-275 18-153 (176)
139 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 132.0 14.7 129 147-277 9-139 (177)
140 2wfh_A SLIT homolog 2 protein 99.6 2.6E-14 9E-19 133.3 14.8 130 169-302 12-143 (193)
141 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.7E-19 135.8 12.1 125 149-275 12-139 (192)
142 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 132.3 10.9 129 166-297 23-159 (168)
143 1w8a_A SLIT protein; signaling 99.6 1.9E-14 6.5E-19 134.2 12.4 132 169-303 10-144 (192)
144 2p1m_B Transport inhibitor res 99.5 5.1E-16 1.7E-20 170.3 0.9 191 102-295 287-516 (594)
145 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.1E-19 128.0 11.1 103 166-270 41-148 (149)
146 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 163.1 10.5 160 82-258 173-336 (727)
147 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.5E-19 128.7 9.4 124 166-292 16-147 (149)
148 4b8c_D Glucose-repressible alc 99.5 2.4E-15 8.4E-20 168.4 4.6 191 22-272 173-369 (727)
149 2p1m_B Transport inhibitor res 99.5 4.2E-16 1.4E-20 170.9 -2.0 173 123-297 287-493 (594)
150 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 126.4 14.7 130 168-300 8-139 (177)
151 3sb4_A Hypothetical leucine ri 99.5 3.3E-14 1.1E-18 144.3 10.8 77 214-292 225-304 (329)
152 1a9n_A U2A', U2A'; complex (nu 99.5 9.5E-15 3.2E-19 134.2 6.2 130 166-298 18-153 (176)
153 4fdw_A Leucine rich hypothetic 99.5 1.2E-12 4.2E-17 136.1 18.9 192 83-282 158-365 (401)
154 2r9u_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 123.1 12.3 109 169-280 14-123 (174)
155 3g39_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 122.7 12.1 109 168-279 10-119 (170)
156 4fdw_A Leucine rich hypothetic 99.4 4.4E-12 1.5E-16 131.9 17.8 242 10-275 123-383 (401)
157 3g39_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 116.5 11.4 107 191-301 10-118 (170)
158 2r9u_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 116.1 11.4 106 192-301 14-121 (174)
159 1ds9_A Outer arm dynein; leuci 99.3 7.8E-15 2.7E-19 137.5 -7.6 107 166-276 47-154 (198)
160 1ds9_A Outer arm dynein; leuci 99.3 2.8E-14 9.6E-19 133.7 -5.1 126 144-276 47-186 (198)
161 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 123.0 10.8 103 171-276 12-117 (347)
162 3pu9_A Protein serine/threonin 99.1 8.6E-10 2.9E-14 106.4 16.8 157 304-476 42-225 (242)
163 3un9_A NLR family member X1; l 99.1 3.5E-12 1.2E-16 131.3 -0.9 37 82-118 72-115 (372)
164 3un9_A NLR family member X1; l 99.1 1.4E-11 4.8E-16 126.8 3.3 130 145-275 101-252 (372)
165 3t91_A Stage II sporulation pr 99.1 3.8E-10 1.3E-14 108.9 12.8 120 344-475 75-220 (242)
166 4fs7_A Uncharacterized protein 99.1 1.1E-09 3.6E-14 113.8 16.4 280 2-292 74-373 (394)
167 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.4E-15 117.2 10.2 107 193-302 11-120 (347)
168 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.4E-13 104.3 21.1 242 11-273 75-368 (394)
169 4fs7_A Uncharacterized protein 99.0 2.9E-09 9.9E-14 110.5 14.6 275 1-287 96-390 (394)
170 3f79_A Probable two-component 98.8 4.9E-08 1.7E-12 94.8 13.5 121 341-475 108-253 (255)
171 3zt9_A Serine phosphatase; hyd 98.8 2.5E-07 8.4E-12 85.8 17.0 147 303-473 33-193 (193)
172 4h09_A Hypothetical leucine ri 98.7 8.8E-07 3E-11 91.0 20.6 245 10-279 56-326 (379)
173 2ra8_A Uncharacterized protein 98.6 1.3E-08 4.3E-13 104.0 4.4 62 214-275 251-320 (362)
174 4gt6_A Cell surface protein; l 98.6 6.6E-07 2.3E-11 92.6 16.6 124 143-274 263-390 (394)
175 4h09_A Hypothetical leucine ri 98.5 3.3E-06 1.1E-10 86.7 18.5 257 1-282 71-352 (379)
176 1io0_A Tropomodulin; LRR prote 98.5 5.5E-08 1.9E-12 89.5 4.5 108 166-275 35-164 (185)
177 2ra8_A Uncharacterized protein 98.4 2.9E-07 9.8E-12 93.9 5.5 189 83-273 108-341 (362)
178 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.1E-12 85.6 2.0 84 166-251 64-164 (185)
179 3rw6_A Nuclear RNA export fact 98.1 9.7E-07 3.3E-11 85.6 2.5 80 187-268 167-257 (267)
180 3rw6_A Nuclear RNA export fact 97.9 4.8E-06 1.6E-10 80.7 3.5 91 186-278 137-237 (267)
181 1pgv_A TMD-1, tropomodulin TMD 97.6 6.4E-05 2.2E-09 69.0 6.1 104 167-272 41-167 (197)
182 3ke6_A Protein RV1364C/MT1410; 97.6 0.0014 4.9E-08 67.4 17.1 154 304-475 67-257 (399)
183 3e4g_A ATP synthase subunit S, 97.5 5.7E-05 2E-09 68.0 3.9 85 167-252 61-154 (176)
184 3rfe_A Platelet glycoprotein I 97.4 0.00028 9.4E-09 60.5 6.4 55 219-275 12-68 (130)
185 1pgv_A TMD-1, tropomodulin TMD 97.2 8.6E-05 2.9E-09 68.2 1.2 83 167-251 70-170 (197)
186 3rfe_A Platelet glycoprotein I 97.0 0.0013 4.3E-08 56.3 6.5 54 171-227 12-67 (130)
187 3e4g_A ATP synthase subunit S, 96.9 0.0008 2.7E-08 60.5 4.6 58 82-139 61-129 (176)
188 3eq2_A Probable two-component 95.2 0.12 4.3E-06 52.6 12.0 116 347-475 253-392 (394)
189 2lz0_A Uncharacterized protein 45.8 20 0.00067 28.3 3.9 46 226-272 7-53 (100)
190 4hhu_A OR280; engineered prote 27.6 83 0.0028 25.1 4.7 63 425-491 33-106 (170)
191 2lz0_A Uncharacterized protein 25.7 63 0.0022 25.2 3.8 12 186-197 16-27 (100)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.8e-29 Score=262.01 Aligned_cols=280 Identities=19% Similarity=0.198 Sum_probs=210.4
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 78 (567)
|++|+|++|.++.++. .|..+++|++|+|++|.++.+++..+..++.|+.+ +...+.+...+ ..+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~~ 137 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-------------VLERNDLSSLPRGIF 137 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE-------------ECCCCccCcCCHHHh
Confidence 5677777777776653 67777777777777777777776666666666654 22222222222 224
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK 156 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~ 156 (567)
..+++|++|++++|.++... .+..+++|++|++++|.++.+++..+++|+.|++++|.+..+. ...+|+.|++++|.
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNS 216 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCSSCSEEECCSSC
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC-CCCcceEEECCCCe
Confidence 66778888888888777654 4677778888888888887777777788888888888777654 33578888888888
Q ss_pred cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423 157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236 (567)
Q Consensus 157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 236 (567)
++.++.. .+++|+.|++++|.++.+ .++..+++|++|++++|.++.+++..+.. +++|++|+|++|+++.+|..+..
T Consensus 217 l~~~~~~-~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~ 293 (390)
T 3o6n_A 217 INVVRGP-VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQP 293 (390)
T ss_dssp CCEEECC-CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCEEECSSSC
T ss_pred eeecccc-ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcccCcccCC
Confidence 8877543 357899999999988876 46888899999999999998776555554 88999999999999988887788
Q ss_pred CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
+++|++|+|++|.++.+|..+ ..+++|+.|++++|+|+.+| ...++.|..+++..|.+.+.
T Consensus 294 l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence 899999999999999888764 57889999999999998887 45666777777777776543
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8.8e-30 Score=271.07 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=215.8
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERRE 77 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~ 77 (567)
|++|+|++|.|+.+ |..|.++++|++|+|++|.+. .+++..+.+++.|+.+ +...+.+.. .+..
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L-------------~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL-------------KLDYNQFLQLETGA 98 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE-------------ECTTCTTCEECTTT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE-------------eCCCCccCccChhh
Confidence 68999999999977 678999999999999999987 5777777778877766 222333322 2456
Q ss_pred CCCCCCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceec-------
Q psy12423 78 PEVKGELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVL------- 142 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~------- 142 (567)
+..+++|++|+|++|.+++.. .+..+++|++|++++|.++.+. +..+++|++|++++|.+.....
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 777889999999999888632 3788889999999999888762 5678889999999888776532
Q ss_pred -------------------------------CCCCCcEEEcCCCccccccCCC---------------------------
Q psy12423 143 -------------------------------NGSSLISVIAGNNKLQSLIVSP--------------------------- 164 (567)
Q Consensus 143 -------------------------------~~~~L~~L~l~~n~l~~~~~~~--------------------------- 164 (567)
..++|+.|++++|.+++..+..
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 1145666666666554321110
Q ss_pred ----------C----CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 165 ----------R----PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 165 ----------~----~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+ .++|++|++++|.+..+ |.++..+++|++|+|++|.++.++...+.. +++|++|+|++|.+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-cccCCEEECCCCccCC
Confidence 0 24677777777777754 567888888888888888888776666554 7888888888888887
Q ss_pred C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423 230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~ 301 (567)
+ |..+..+++|++|+|++|.|+.+++..|..+++|++|+|++|+|+.+|... ..+++|..+++..|.+.+.+
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 5 456788888888888888888887777788888888888888888888754 46777888888877776553
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=269.17 Aligned_cols=292 Identities=18% Similarity=0.207 Sum_probs=246.6
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 78 (567)
|++|+|++|.|+.++ ..|.++++|++|+|++|.|+.+++..+.+++.|+.+ +...+.+...+ ..+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL-------------GLRSNRLKLIPLGVF 100 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCSCCTTSS
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE-------------ECCCCcCCccCcccc
Confidence 578999999999884 679999999999999999998877777778877766 22222232222 346
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----LNGSSLIS 149 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~ 149 (567)
..+++|++|+|++|.+.... .+..+++|++|++++|.+..+ .+..+++|++|++++|.++.++ ..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 78899999999999998764 688899999999999999876 3778899999999999998875 46789999
Q ss_pred EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423 150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 226 (567)
|++++|.+..+....+ +++|++|++++|.+. .+|..+....+|+.|+|++|.++.+|...+.. +++|+.|+|++|.
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNP 259 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCc
Confidence 9999999999887766 889999999998655 66766666679999999999999999877766 9999999999999
Q ss_pred CCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCCcce
Q psy12423 227 LTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSDALI 304 (567)
Q Consensus 227 l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~~~~ 304 (567)
++.++. .+..+++|+.|+|++|.++.+++..|..+++|+.|+|++|+|+.+|+.. ..+.+|..+++..|.+.+.+.+.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 998664 5789999999999999999998888899999999999999999999765 46788999999999888776554
Q ss_pred ee
Q psy12423 305 GI 306 (567)
Q Consensus 305 ~~ 306 (567)
.+
T Consensus 340 ~~ 341 (477)
T 2id5_A 340 WV 341 (477)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-28 Score=270.25 Aligned_cols=280 Identities=19% Similarity=0.198 Sum_probs=231.1
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 78 (567)
|++|+|++|.|+.+|. .|..+++|++|+|++|.|+.+|+..+..++.|+.+ +...+.+...+ ..+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-------------VLERNDLSSLPRGIF 143 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE-------------EeeCCCCCCCCHHHh
Confidence 6788888888887764 78888889999999888888888777777777765 22223333222 335
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK 156 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~ 156 (567)
..+++|++|+|++|.+++.. .+..+++|++|++++|.++.++++.+++|+.|++++|.+..+. ...+|+.|++++|.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNS 222 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCTTCSEEECCSSC
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-CCchhheeeccCCc
Confidence 77889999999999888765 5788889999999999998888888899999999999888764 34679999999999
Q ss_pred cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423 157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236 (567)
Q Consensus 157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 236 (567)
++.++... +++|+.|+|++|.++.. .++..+++|+.|+|++|.++.+++..+.. +++|+.|+|++|.++.+|..+..
T Consensus 223 l~~~~~~~-~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 223 INVVRGPV-NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp CCEEECSC-CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCEEECSSSC
T ss_pred cccccccc-CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCCCCccccc
Confidence 88776543 57899999999999875 56889999999999999999876666655 89999999999999999888888
Q ss_pred CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.+| ...++.|..+++..|.+.|.
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 999999999999999998875 68899999999999999887 45667788888888887654
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.4e-28 Score=247.41 Aligned_cols=274 Identities=18% Similarity=0.263 Sum_probs=163.9
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|++|++++|.+..+|. +..+++|++|++++|.++.++. +..++.|+.+ ++..+....+ ..+..
T Consensus 46 L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L----------~L~~n~i~~~----~~~~~ 108 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNL----------YIGTNKITDI----SALQN 108 (347)
T ss_dssp CSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------ECCSSCCCCC----GGGTT
T ss_pred ccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEE----------EccCCcccCc----hHHcC
Confidence 4667777777766653 6667777777777777776665 3445555444 1111111111 12344
Q ss_pred CCCccEEEecCCCCCCcccc-----------------------CCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCc
Q psy12423 81 KGELTSVNLRSNQLKGTIIL-----------------------GNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQ 136 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l-----------------------~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~ 136 (567)
+++|++|++++|.+.....+ ..+++|++|++++|.+..++ +..+++|++|++++|.
T Consensus 109 l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC
T ss_pred CCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc
Confidence 45555555555555444444 44445555555555544432 4555566666666665
Q ss_pred cccee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccC
Q psy12423 137 LKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCREL 214 (567)
Q Consensus 137 l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 214 (567)
+..+. ..+++|+.|++++|.++...+...+++|++|++++|.++.++. +..+++|++|++++|.++.++. +.. +
T Consensus 189 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-l 264 (347)
T 4fmz_A 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA--VKD-L 264 (347)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTT-C
T ss_pred ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh--Hhc-C
Confidence 55543 3445666666666666655543336677777777777776655 6677777777777777776632 222 6
Q ss_pred CCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccC
Q psy12423 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294 (567)
Q Consensus 215 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~ 294 (567)
++|++|++++|.++.++ .+..+++|+.|++++|.++.+++..+..+++|+.|++++|+++.+|+ ...++.|..+++..
T Consensus 265 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 77777777777777764 36667777777777777777766666777777777777777776665 55566666666665
Q ss_pred Ccc
Q psy12423 295 PGF 297 (567)
Q Consensus 295 ~~~ 297 (567)
|.+
T Consensus 343 N~i 345 (347)
T 4fmz_A 343 QVI 345 (347)
T ss_dssp C--
T ss_pred hcc
Confidence 543
No 6
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=5.2e-28 Score=264.61 Aligned_cols=281 Identities=19% Similarity=0.162 Sum_probs=187.2
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.|+.+| ..|.++++|++|+|++|.|+++++..+..++.|+.+ +...+.+...+..
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-------------~Ls~N~l~~lp~~-- 118 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL-------------DVSHNRLQNISCC-- 118 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-------------ECTTSCCCEECSC--
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE-------------ECCCCcCCccCcc--
Confidence 578888888888776 478888888888888888888776666677777665 2222223222222
Q ss_pred CCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCCCcccccC--cEEEcccCcc--ccee----cC-----
Q psy12423 80 VKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALNRL--ESIKCSRNQL--KTLV----LN----- 143 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~~L--~~L~ls~n~l--~~l~----~~----- 143 (567)
.+++|++|+|++|+++... .+.++++|++|++++|.++...+..+++| ++|++++|.+ .... ..
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 6778888888888887632 57778888888888888877666666666 7777776655 1110 00
Q ss_pred ----------------------------------------------------------------------------CCCC
Q psy12423 144 ----------------------------------------------------------------------------GSSL 147 (567)
Q Consensus 144 ----------------------------------------------------------------------------~~~L 147 (567)
..+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 0144
Q ss_pred cEEEcCCCcccc-ccCC------------------------------------------------------CCCCcccEE
Q psy12423 148 ISVIAGNNKLQS-LIVS------------------------------------------------------PRPARLQHL 172 (567)
Q Consensus 148 ~~L~l~~n~l~~-~~~~------------------------------------------------------~~~~~L~~L 172 (567)
+.|++++|.+++ ++.. ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 455555554442 1111 225678888
Q ss_pred ecccCCCCC-cccccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCC-Cchh-hhCCCCCcEEEccC
Q psy12423 173 DISYNELES-LPDWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTS-LPSL-IRQIASLKYLFLQS 247 (567)
Q Consensus 173 ~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L~~L~Ls~ 247 (567)
++++|.++. +|.++..+++|+.|++++|+++.++. ..+.. +++|++|+|++|.++. +|.. +..+++|++|++++
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 888888875 56778888888888888888887764 22333 7788888888888876 6653 56677777777777
Q ss_pred CCCCCCchhhhcCC-CCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 248 NSINILPQLFLQNS-SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 248 N~l~~l~~~~l~~l-~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
|.+++..+. .+ ++|+.|+|++|+|+.||...++++.|..+++..|.+...
T Consensus 438 n~l~~~~~~---~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 438 NMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp SCCCGGGGS---SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCCCcchhh---hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCC
Confidence 777643322 22 577777777777777777666666776666666666544
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.1e-27 Score=239.11 Aligned_cols=257 Identities=18% Similarity=0.197 Sum_probs=147.3
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 79 (567)
|+.++++++.++.+|..+. ++|++|+|++|.|+.++...+..++.|+.+ +...+.+... +..+.
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTL-------------ILINNKISKISPGAFA 97 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEE-------------ECCSSCCCCBCTTTTT
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEE-------------ECCCCcCCeeCHHHhc
Confidence 5678888888888887654 678888998888888877655555555443 1111112111 23445
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccce--e----cCCCCCcEE
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL--V----LNGSSLISV 150 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l--~----~~~~~L~~L 150 (567)
.+++|++|++++|+++.... .-.++|++|++++|.++.++ +..+++|++|++++|.+... . ..+++|+.|
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 55566666666666554331 11245666666666665543 44555666666666655431 1 234556666
Q ss_pred EcCCCccccccCCCCCCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 151 IAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 151 ~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
++++|.++.++... .++|++|++++|.++.+ |..+..+++|+.|++++|.++.++...+.. +++|++|+|++|.++.
T Consensus 177 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 177 RIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLVK 254 (330)
T ss_dssp ECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCSS
T ss_pred ECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCcc
Confidence 66666665544322 35566666666666544 345556666666666666666555444433 5566666666666666
Q ss_pred CchhhhCCCCCcEEEccCCCCCCCchhhhcC------CCCCcEEEccCCcCC
Q psy12423 230 LPSLIRQIASLKYLFLQSNSINILPQLFLQN------SSKLKVLNISKNCLK 275 (567)
Q Consensus 230 lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~------l~~L~~L~Ls~N~l~ 275 (567)
+|..+..+++|++|++++|.|+.++...|.. .+.|+.|++++|++.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 6655556666666666666666655554432 245556666666654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=256.14 Aligned_cols=262 Identities=19% Similarity=0.240 Sum_probs=227.1
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 78 (567)
|++|+|++|.|+.+ |..|.++++|++|+|++|.++.+|...+.+++.|+.+ +...+.+.. .+..+
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL-------------DISENKIVILLDYMF 124 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE-------------ECTTSCCCEECTTTT
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE-------------ECCCCccccCChhHc
Confidence 78999999999977 6789999999999999999999999888888888766 222222222 23567
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLIS 149 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~ 149 (567)
..+++|++|+|++|.+.... .+..+++|++|++++|.++.++ +..+++|+.|++++|.+..+. ..+++|+.
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 78999999999999998765 6889999999999999999876 678999999999999998875 35789999
Q ss_pred EEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423 150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 226 (567)
|++++|......+... ..+|++|+|++|.++.+|. .+..+++|+.|+|++|.++.++...+.. +++|+.|+|++|.
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~ 283 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE-LLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT-CTTCCEEECCSSC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc-cccCCEEECCCCc
Confidence 9999987655444333 5699999999999999984 7899999999999999999998887766 9999999999999
Q ss_pred CCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 227 LTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 227 l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
++.+ |..+..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++..
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9985 6688999999999999999999999999999999999999999873
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=259.08 Aligned_cols=162 Identities=20% Similarity=0.151 Sum_probs=104.7
Q ss_pred CCcccEEecccCCCCC-cccccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCC-Cchh-hhCCCCC
Q psy12423 166 PARLQHLDISYNELES-LPDWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTS-LPSL-IRQIASL 240 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L 240 (567)
+++|++|++++|.++. +|.++..+++|++|++++|+++.++. ..+.. +++|++|+|++|.++. +|.. +..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccC
Confidence 5678888888888875 57777888888888888888876543 22333 7788888888888877 7764 5667777
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc--c-----eeeccCCCCc
Q psy12423 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA--L-----IGIFDSGDNG 313 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~--~-----~~~~dg~~~~ 313 (567)
++|++++|.+++..+..+ .++|+.|++++|+|+.+|..+..++.|..+++..|.+...+. + ...++-.++.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCCCCcchhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 777777777764332221 157777777777777777766666677776666666654422 1 1123334555
Q ss_pred hhhhHHhhhh-HHHHHhh
Q psy12423 314 DIASTLVQSI-PRILLEE 330 (567)
Q Consensus 314 ~is~~l~~~l-P~~l~~~ 330 (567)
..+.+-..++ ..|+.+.
T Consensus 480 ~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 480 WDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp BCCCHHHHHHHHHHHHHT
T ss_pred CcccCCchHHHHHHHHhc
Confidence 5555544555 5555443
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.3e-27 Score=254.39 Aligned_cols=267 Identities=20% Similarity=0.235 Sum_probs=217.0
Q ss_pred CcEEEccCCCCC-cCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423 1 LQEFRVDRNDLT-EFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (567)
|++|+|++|.+. .++ ..|.++++|++|+|++|.++.+++..+..++.|+.+ ++..+...+.......+
T Consensus 56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL----------TLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE----------ECTTSCCBTHHHHSSTT
T ss_pred ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE----------eCCCCCCCccccCcccc
Confidence 789999999987 664 579999999999999999998766666777777765 22222222222223446
Q ss_pred CCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC---Cc------------------------------
Q psy12423 79 EVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD---LG------------------------------ 122 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~---~~------------------------------ 122 (567)
..+++|++|+|++|.+++.. .+..+++|++|++++|.++.+. +.
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 77888999999998888764 2778888899998888877642 22
Q ss_pred ----ccccCcEEEcccCcccceec-------------------------------------------CCCCCcEEEcCCC
Q psy12423 123 ----ALNRLESIKCSRNQLKTLVL-------------------------------------------NGSSLISVIAGNN 155 (567)
Q Consensus 123 ----~l~~L~~L~ls~n~l~~l~~-------------------------------------------~~~~L~~L~l~~n 155 (567)
.+++|++|++++|.+..... ..++|+.|++++|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 23678999999997753210 1258999999999
Q ss_pred ccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423 156 KLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P 231 (567)
Q Consensus 156 ~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p 231 (567)
.++...+..+ +++|++|+|++|.++.+ |..|..+++|++|+|++|.++.++...+.. +++|++|+|++|.++.+ |
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCCCEECT
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcccccCh
Confidence 9999887766 89999999999999977 568999999999999999999988777765 99999999999999986 6
Q ss_pred hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC-CC
Q psy12423 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM-LP 278 (567)
Q Consensus 232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~-ip 278 (567)
..+..+++|++|+|++|+|+.+|+..+..+++|+.|++++|+++. +|
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 789999999999999999999999988999999999999999984 44
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=6.6e-28 Score=266.07 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=86.7
Q ss_pred CCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCc
Q psy12423 166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLK 241 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~ 241 (567)
+++|+.|++++|.+..++ ..+..+++|++|++++|.+....+..+.. +++|++|++++|.+++ +|..+..+++|+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 445555555555554332 24455555555555555555433333332 5556666666665554 455556666666
Q ss_pred EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCc-c------eeeccCCCCc
Q psy12423 242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDA-L------IGIFDSGDNG 313 (567)
Q Consensus 242 ~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~-~------~~~~dg~~~~ 313 (567)
+|+|++|.++.+++..+..+++|+.|+|++|+++.+ |..+.++++|..+++..|.+...+. + ...++-.++.
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 666666666666555556666666666666666654 4444455556666665555543311 1 1122334444
Q ss_pred hhhhHHhhhhHHHHHhh
Q psy12423 314 DIASTLVQSIPRILLEE 330 (567)
Q Consensus 314 ~is~~l~~~lP~~l~~~ 330 (567)
..+.+-..++..|+...
T Consensus 557 ~~c~c~~~~~~~~l~~~ 573 (606)
T 3vq2_A 557 VACICEHQKFLQWVKEQ 573 (606)
T ss_dssp CCCSSTTHHHHTTTTTS
T ss_pred cccCCccHHHHHHHHcC
Confidence 44444445555555443
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.7e-27 Score=239.62 Aligned_cols=257 Identities=18% Similarity=0.213 Sum_probs=126.2
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 79 (567)
|+.++++++.++.+|..+. ++|+.|+|++|.|+.+++..+..++.|+.+ +...+.+... +..+.
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~~ 99 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYAL-------------VLVNNKISKIHEKAFS 99 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCEECGGGST
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEE-------------ECCCCccCccCHhHhh
Confidence 3566666666666665443 466666666666666655444444444433 1111111111 23334
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccce--ec---CCCCCcEEE
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL--VL---NGSSLISVI 151 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l--~~---~~~~L~~L~ 151 (567)
.+++|++|++++|.++.... .-.++|++|++++|.++.++ +..+++|++|++++|.++.. .. ...+|+.|+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCS-SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CcCCCCEEECCCCcCCccCc-cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 45555555555555543321 11145555555555555443 34455555555555555321 10 011455555
Q ss_pred cCCCccccccCCCCCCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423 152 AGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230 (567)
Q Consensus 152 l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l 230 (567)
+++|.++.++... .++|++|++++|.++.++ ..+..+++|+.|++++|.++.++...+.. +++|++|+|++|+++.+
T Consensus 179 l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 179 ISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEECCSSCCCBC
T ss_pred CcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEECCCCcCeec
Confidence 5555555443322 245555555555555443 34555555555555555555554443333 55555555555555555
Q ss_pred chhhhCCCCCcEEEccCCCCCCCchhhhcC------CCCCcEEEccCCcCC
Q psy12423 231 PSLIRQIASLKYLFLQSNSINILPQLFLQN------SSKLKVLNISKNCLK 275 (567)
Q Consensus 231 p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~------l~~L~~L~Ls~N~l~ 275 (567)
|..+..+++|++|++++|.|+.++...|.. .+.|+.|++++|++.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 555555555555555555555555444432 234555555555554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.3e-28 Score=267.02 Aligned_cols=279 Identities=20% Similarity=0.215 Sum_probs=148.4
Q ss_pred CcEEEccCCCCCc------------------CCccCC--CCCCCCEEeCcCCCCCC-CChhhhccCcCchhhhhhccchh
Q psy12423 1 LQEFRVDRNDLTE------------------FPGNQD--SFPRLKFLSAAQNRISH-LPVFLRHPMSPLNNVIEHGIAEE 59 (567)
Q Consensus 1 L~~L~Ls~n~l~~------------------lp~~~~--~l~~L~~L~Ls~n~i~~-lp~~~~~~L~~L~~l~~~~~~~~ 59 (567)
|++|+|++|.++. +|+.++ ++++|++|+|++|.+.+ +|..+ ..++.|+.+.
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~------- 279 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLIN------- 279 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEE-------
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEE-------
Confidence 7899999999997 999998 99999999999999775 77554 4566666541
Q ss_pred hccccccc-cCCcccccCCCC------CCCCccEEEecCCCCCCccc---cCCCCCccEEEccCCCCC-CCC-CcccccC
Q psy12423 60 REEDFEQD-EDGIIVERREPE------VKGELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIE-SLD-LGALNRL 127 (567)
Q Consensus 60 ~~~~~~~~-~~~l~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~---l~~l~~L~~L~L~~n~l~-~~~-~~~l~~L 127 (567)
+..+. ..+. ..+..+. .+++|++|++++|+++..+. ++.+++|++|++++|.++ .++ +..+++|
T Consensus 280 ---Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 280 ---VACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp ---CTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred ---CcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 11111 1110 0011111 12456666666666554332 555556666666666555 332 4445555
Q ss_pred cEEEcccCcccceec---CCCC-CcEEEcCCCccccccCCCC---CCcccEEecccCCCCC-cccccC-------CCcCC
Q psy12423 128 ESIKCSRNQLKTLVL---NGSS-LISVIAGNNKLQSLIVSPR---PARLQHLDISYNELES-LPDWID-------TCPEL 192 (567)
Q Consensus 128 ~~L~ls~n~l~~l~~---~~~~-L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~-lp~~l~-------~l~~L 192 (567)
++|++++|.+..++. .+++ |+.|++++|.++.++.... +++|++|++++|.++. +|..+. .+++|
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 555555555554432 2334 5555555555554433211 2245555555555542 333444 44455
Q ss_pred cEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC-C-------CCCcEEEccCCCCCCCchhhh-cCCCC
Q psy12423 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ-I-------ASLKYLFLQSNSINILPQLFL-QNSSK 263 (567)
Q Consensus 193 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-l-------~~L~~L~Ls~N~l~~l~~~~l-~~l~~ 263 (567)
++|+|++|.++.+|..++.. +++|++|+|++|.++.+|..+.. . ++|+.|+|++|.|+.+|..++ ..+++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFST-GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHT-TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CEEECcCCccCcCCHHHHcc-CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 55555555555555554443 45555555555555554442211 1 145555555555555554432 24555
Q ss_pred CcEEEccCCcCCCCCCCCcCCccceeecc
Q psy12423 264 LKVLNISKNCLKMLPSLQKGFYLLNISQL 292 (567)
Q Consensus 264 L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l 292 (567)
|+.|+|++|+|+.+|..+..+..|+.+++
T Consensus 515 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp CCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred cCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 55555555555555555444444444444
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.3e-26 Score=247.60 Aligned_cols=213 Identities=20% Similarity=0.331 Sum_probs=126.4
Q ss_pred CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee--cCCCCCcEEEcCCC
Q psy12423 79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNN 155 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n 155 (567)
..+++|++|++++|.+.....+..+++|++|++++|.+..+ +++.+++|+.|++++|.+..+. ..+++|+.|++++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred ccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC
Confidence 34555555666665555544555555666666666655554 3455556666666666655443 34556666666666
Q ss_pred ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423 156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235 (567)
Q Consensus 156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 235 (567)
.++...+...+++|++|++++|.++.++. +..+++|+.|++++|+++.++. +.. +++|+.|+|++|++++++. +.
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~-~~ 328 (466)
T 1o6v_A 254 QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP-VS 328 (466)
T ss_dssp CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG-GG
T ss_pred ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh-hc
Confidence 66665553335666666666666665554 5566666666666666666554 222 6666666666666666554 55
Q ss_pred CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcccc
Q psy12423 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~ 299 (567)
.+++|+.|++++|.+++++. +.++++|+.|++++|+++.+++ ...++.|..+++..+.+.+
T Consensus 329 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred cCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 66666666666666666642 4566666666666666665554 4555566666665555544
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-27 Score=247.56 Aligned_cols=278 Identities=22% Similarity=0.253 Sum_probs=233.9
Q ss_pred CcEEEccCCCCCcCCcc-CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCC
Q psy12423 1 LQEFRVDRNDLTEFPGN-QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 78 (567)
|++|++++|.++.+|.. |..+++|++|+|++|.++.+++..+..++.|+.+ +...+.+... +..+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL-------------YMGFNAIRYLPPHVF 113 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEE-------------ECCCCCCCcCCHHHh
Confidence 57899999999999875 7889999999999999999888777778887766 2222333222 2456
Q ss_pred CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-cCCCCCcEEEc
Q psy12423 79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV-LNGSSLISVIA 152 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l 152 (567)
..+++|++|+|++|.++... .+..+++|++|++++|.++.++ +..+++|++|++++|.++.+. ..+++|+.|++
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence 78899999999999999766 3688999999999999998874 778899999999999998876 45789999999
Q ss_pred CCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423 153 GNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P 231 (567)
Q Consensus 153 ~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p 231 (567)
++|.++.+.. +.+|++|++++|.+..+|..+ .++|+.|++++|.++.++ . +.. +++|++|+|++|.++++ |
T Consensus 194 ~~n~l~~~~~---~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~-~-l~~-l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 194 SYNLLSTLAI---PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-W-LLN-YPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CSSCCSEEEC---CSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCCG-G-GGG-CTTCSEEECCSSCCCEEES
T ss_pred ccccccccCC---CCcceEEECCCCeeeeccccc--cccccEEECCCCCCcccH-H-HcC-CCCccEEECCCCcCCCcCh
Confidence 9999887643 468999999999999887643 579999999999999874 2 333 89999999999999985 6
Q ss_pred hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
..+..+++|++|+|++|.++.+|... ..+++|+.|+|++|+++.+|..+..++.|..+++..|.+...
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred hHccccccCCEEECCCCcCcccCccc-CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 78899999999999999999988754 689999999999999999998877788888888888776544
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.5e-27 Score=265.60 Aligned_cols=296 Identities=22% Similarity=0.201 Sum_probs=186.0
Q ss_pred CcEEEccCCCCCc------------------CCccCC--CCCCCCEEeCcCCCCC-CCChhhhccCcCchhhh--hhc-c
Q psy12423 1 LQEFRVDRNDLTE------------------FPGNQD--SFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVI--EHG-I 56 (567)
Q Consensus 1 L~~L~Ls~n~l~~------------------lp~~~~--~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~--~~~-~ 56 (567)
|++|+|++|.|+. +|+.++ ++++|++|+|++|.+. .+|..+ ..++.|+.+. .+. +
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGI 528 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTS
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCc
Confidence 6899999999998 999888 9999999999999876 477554 4566666541 111 1
Q ss_pred ch-h----------------hccccccccCCcccccC--CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCC
Q psy12423 57 AE-E----------------REEDFEQDEDGIIVERR--EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117 (567)
Q Consensus 57 ~~-~----------------~~~~~~~~~~~l~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~ 117 (567)
.. . .+.......+.+...+. .+..+++|+.|+|++|.++..+.++.+++|+.|++++|.++
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc
Confidence 11 0 11122222333333333 45566667777777776664445666667777777777666
Q ss_pred CCC--Cccccc-CcEEEcccCcccceecC-----CCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCCc
Q psy12423 118 SLD--LGALNR-LESIKCSRNQLKTLVLN-----GSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELESL 182 (567)
Q Consensus 118 ~~~--~~~l~~-L~~L~ls~n~l~~l~~~-----~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~l 182 (567)
.++ +..+++ |+.|++++|.+..++.. .++|+.|++++|.+.+..+... +++|+.|+|++|.++.+
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l 688 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence 554 556666 77777777766655422 1236667777776655432211 34677777777777766
Q ss_pred cccc-CCCcCCcEEECcCCCCCCCChhhhhcc------CCCccEEECCCCCCCCCchhhh--CCCCCcEEEccCCCCCCC
Q psy12423 183 PDWI-DTCPELETIFASHNRITQLPSQFFCRE------LGKLHTLQLSFNRLTSLPSLIR--QIASLKYLFLQSNSINIL 253 (567)
Q Consensus 183 p~~l-~~l~~L~~L~Ls~N~l~~l~~~~~~~~------l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~~l 253 (567)
|..+ ..+++|+.|+|++|.|+.+|...+... +++|+.|+|++|+|+.+|..+. .+++|+.|+|++|.|+.+
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l 768 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc
Confidence 6543 366777777777777777776665420 1267777777777777776665 677777777777777776
Q ss_pred chhhhcCCCCCcEEEccC------CcCC-CCCCCCcCCccceeecccCCccc
Q psy12423 254 PQLFLQNSSKLKVLNISK------NCLK-MLPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~------N~l~-~ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
|..+ ..+++|+.|+|++ |++. .+|..+..+++|..+++..|.+.
T Consensus 769 p~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 769 PTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred chhh-hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC
Confidence 6554 4667777777765 4433 66666666666666666666653
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.4e-27 Score=270.52 Aligned_cols=295 Identities=19% Similarity=0.157 Sum_probs=219.8
Q ss_pred CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCC-CCC--CChhhhc------cCcCchhhh--hhccchh---------
Q psy12423 1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNR-ISH--LPVFLRH------PMSPLNNVI--EHGIAEE--------- 59 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~-i~~--lp~~~~~------~L~~L~~l~--~~~~~~~--------- 59 (567)
|++|+|++|.+. .+|..|.++++|++|+|++|+ ++. +|..+.. .++.|+.+. .+.+...
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L 572 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence 577888887755 667777778888888888776 664 6654432 111333221 1111100
Q ss_pred -hccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc-ccCCCCC-ccEEEccCCCCCCCC--Cccc--ccCcEEEc
Q psy12423 60 -REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-ILGNYGN-LTTLDVSENSIESLD--LGAL--NRLESIKC 132 (567)
Q Consensus 60 -~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~-L~~L~L~~n~l~~~~--~~~l--~~L~~L~l 132 (567)
.+...+...+.+...+ .+..+++|+.|+|++|++...+ .+..+++ |+.|++++|.++.++ +..+ ++|+.|++
T Consensus 573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEEC
T ss_pred CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEEC
Confidence 0111122333333334 6788899999999999999655 6888888 999999999999775 3333 34999999
Q ss_pred ccCcccceec---------CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCC--------CcCCc
Q psy12423 133 SRNQLKTLVL---------NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDT--------CPELE 193 (567)
Q Consensus 133 s~n~l~~l~~---------~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~ 193 (567)
++|.+.+.++ ..++|+.|++++|.++.++...+ +++|+.|+|++|.++.+|..+.. +++|+
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 9999976543 23489999999999997766544 78999999999999999875443 23999
Q ss_pred EEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC------CCCCCCchhhhcCCCCCcEE
Q psy12423 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS------NSINILPQLFLQNSSKLKVL 267 (567)
Q Consensus 194 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~------N~l~~l~~~~l~~l~~L~~L 267 (567)
.|+|++|+|+.+|..++...+++|+.|+|++|.|+++|..+..+++|+.|+|++ |.+....+..+.++++|+.|
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 999999999999988861128999999999999999999999999999999977 66665545556899999999
Q ss_pred EccCCcCCCCCCCCcCCccceeecccCCccc
Q psy12423 268 NISKNCLKMLPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 268 ~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
+|++|+|..||..+. +.|..+++..|.+.
T Consensus 812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 812 QIGSNDIRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ECCSSCCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred ECCCCCCCccCHhhc--CCCCEEECCCCCCC
Confidence 999999999998755 46777777666553
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.2e-26 Score=237.87 Aligned_cols=257 Identities=20% Similarity=0.292 Sum_probs=189.2
Q ss_pred CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCc
Q psy12423 18 QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGT 97 (567)
Q Consensus 18 ~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 97 (567)
+..+++|++|++++|.+..+|. +..++.|+.+ ++..+....++ . +..+++|++|++++|.++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L----------~l~~n~i~~~~---~-~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYL----------NLNGNQITDIS---P-LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEE----------ECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCC
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEE----------EccCCccccch---h-hhcCCcCCEEEccCCcccCc
Confidence 4578899999999999999875 3456666655 22222233322 2 67889999999999999988
Q ss_pred cccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccc-ee--cCCCCCcEEEcCCCccccccCCCCCCcccEEe
Q psy12423 98 IILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKT-LV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLD 173 (567)
Q Consensus 98 ~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~-l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 173 (567)
..+..+++|++|++++|.+..++ +..+++|++|++++|.... +. ..+++|+.|++++|.+........+++|++|+
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 78999999999999999999874 7788999999999984333 22 45678888888888887776644477888888
Q ss_pred cccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCC
Q psy12423 174 ISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL 253 (567)
Q Consensus 174 Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 253 (567)
+++|.+..++. +..+++|+.|++++|.+..++. +.. +++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VAN-MTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--hhc-CCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC
Confidence 88888887765 6677777777777777776655 222 6777777777777777766 66777777777777777776
Q ss_pred chhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccc
Q psy12423 254 PQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
+. +..+++|+.|++++|+++.+| .+..+++|..+++..+.+.
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 259 NA--VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred hh--HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCC
Confidence 43 467777777777777777764 3445556666666655543
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1e-26 Score=248.50 Aligned_cols=271 Identities=20% Similarity=0.280 Sum_probs=130.1
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|+.|+++++.++.+|. +..+++|++|+|++|.++.+|+ +..++.|+.+ .+..+...+++ . +..
T Consensus 48 l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L----------~l~~n~l~~~~---~-~~~ 110 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI----------LMNNNQIADIT---P-LAN 110 (466)
T ss_dssp CCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------ECCSSCCCCCG---G-GTT
T ss_pred ccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEE----------ECCCCccccCh---h-hcC
Confidence 3556666666655553 5555666666666666665554 3344444433 11111111111 1 334
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC----------------------CCcccccCcEEEcccCccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL----------------------DLGALNRLESIKCSRNQLK 138 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~----------------------~~~~l~~L~~L~ls~n~l~ 138 (567)
+++|++|++++|.+++...+..+++|++|++++|.+..+ ++..+++|+.|++++|.+.
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence 444444444444444443444444444444444443332 2344455555555555555
Q ss_pred cee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCC
Q psy12423 139 TLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGK 216 (567)
Q Consensus 139 ~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~ 216 (567)
.+. ..+++|+.|++++|.++...+...+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. +.. +++
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~ 266 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSG-LTK 266 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTT-CTT
T ss_pred CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhc-CCC
Confidence 443 234555555555555555544333555555555555555543 24455555555555555554443 222 455
Q ss_pred ccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCc
Q psy12423 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296 (567)
Q Consensus 217 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~ 296 (567)
|+.|++++|.++.++. +..+++|+.|++++|.++.+++ +..+++|+.|++++|+++.+++ ...+++|..+++..|.
T Consensus 267 L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 267 LTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred CCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 5555555555555444 4445555555555555555444 3445555555555555554443 2333444444444333
No 20
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2e-26 Score=252.83 Aligned_cols=257 Identities=30% Similarity=0.307 Sum_probs=212.2
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
+++|++++|.|+.+|..+. ++|++|+|++|.|+.+|. . ++.|+.+ ++..+....++ ..
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-~---l~~L~~L----------~Ls~N~l~~lp------~~ 99 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-L---PPELRTL----------EVSGNQLTSLP------VL 99 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-C---CTTCCEE----------EECSCCCSCCC------CC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-c---CCCCCEE----------EcCCCcCCcCC------CC
Confidence 5789999999999998776 799999999999999987 2 3444443 11223222222 26
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL 160 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~ 160 (567)
+++|++|+|++|.++.... .+++|+.|++++|.++.++. .+++|++|++++|+++.++....+|+.|++++|.++.+
T Consensus 100 l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred CCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCC
Confidence 7899999999999988655 67899999999999998764 35899999999999998887788999999999999987
Q ss_pred cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423 161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240 (567)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 240 (567)
+ ..+++|+.|++++|.++.+|.. +++|+.|++++|.++.+|.. +++|+.|+|++|.|+.+| ..+++|
T Consensus 177 ~--~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~-----~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 177 P--MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp C--CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred c--ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC-----CCCCCEEEccCCccCcCC---CCCCcC
Confidence 7 4478999999999999988864 47899999999999988852 578999999999999988 456889
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcccc
Q psy12423 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~ 299 (567)
+.|+|++|.|+.+|. .+++|+.|+|++|+|+.||..+.++++|..+++..|.+.+
T Consensus 244 ~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 244 KELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred cEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 999999999998887 5688999999999999999888888888888888877654
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.4e-26 Score=255.43 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=174.3
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERREP 78 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 78 (567)
+++|+|++|.|+.+ |..|.++++|++|+|++|.+..+++..+.+++.|+.+ +...+.+.. .+..+
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L-------------~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL-------------VLTANPLIFMAETAL 101 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE-------------ECTTCCCSEECTTTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCee-------------eCCCCcccccChhhh
Confidence 57899999999987 5679999999999999999998877777778877765 222222222 23556
Q ss_pred CCCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCc-
Q psy12423 79 EVKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLI- 148 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~- 148 (567)
..+++|++|++++|.+++. ..+..+++|++|++++|.+..++ +..+++|++|++++|.+..+. ..+.+|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 7788888888888888875 36778888888888888887752 444778888888888877664 3456666
Q ss_pred -EEEcCCCccccccCCCC-CC----------------------------------------------------cccEEec
Q psy12423 149 -SVIAGNNKLQSLIVSPR-PA----------------------------------------------------RLQHLDI 174 (567)
Q Consensus 149 -~L~l~~n~l~~~~~~~~-~~----------------------------------------------------~L~~L~L 174 (567)
.|++++|.++...+..+ .. +|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 66777777666554433 11 3445555
Q ss_pred ccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCC-
Q psy12423 175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSIN- 251 (567)
Q Consensus 175 s~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~- 251 (567)
++|.++.++. .|..+++|++|++++|.++.+|..+.. +++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 5555554432 355555555555555555555554332 55555555555555543 234455555555555555544
Q ss_pred CCchhhhcCCCCCcEEEccCCcCCCC---CCCCcCCccceeecccCC
Q psy12423 252 ILPQLFLQNSSKLKVLNISKNCLKML---PSLQKGFYLLNISQLRLP 295 (567)
Q Consensus 252 ~l~~~~l~~l~~L~~L~Ls~N~l~~i---p~~~~~~~~L~~~~l~~~ 295 (567)
.++...+..+++|++|++++|+++.+ |..+.++++|+.+++..+
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 44444445555555555555555533 333334444444444433
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=251.50 Aligned_cols=111 Identities=22% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC---chhhhCCCCCcEEEccCCCCCC-CchhhhcCCC
Q psy12423 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL---PSLIRQIASLKYLFLQSNSINI-LPQLFLQNSS 262 (567)
Q Consensus 187 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~Ls~N~l~~-l~~~~l~~l~ 262 (567)
..+++|++|++++|.++...+..+.. +++|++|+|++|+++++ |..+..+++|++|++++|.++. +|...+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 56677888888888887633333333 77888888888888753 4567778888888888888887 7777677788
Q ss_pred CCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423 263 KLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 263 ~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
+|+.|++++|+++ .+|.... ..|..+++..|.+...
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI 436 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc
Confidence 8888888888885 4443332 3455555555555433
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=3.6e-27 Score=260.15 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=144.3
Q ss_pred cccCcEEEcccCccccee---cCCCCCcEEEcCCCccccccC-CCC--CCcccEEecccCCCCC-cccccCCCcCCcEEE
Q psy12423 124 LNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSLIV-SPR--PARLQHLDISYNELES-LPDWIDTCPELETIF 196 (567)
Q Consensus 124 l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~~~-~~~--~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~ 196 (567)
+++|++|++++|.+..++ ..+++|+.|++++|.+....+ ..+ +++|++|++++|.+.. +|..+..+++|++|+
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 344444444444444333 235778888888888888766 333 8899999999999985 577899999999999
Q ss_pred CcCCCCCC--CChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423 197 ASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 197 Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
+++|.++. +|..+ .. +++|++|+|++|.++++ |..+..+++|++|+|++|+++.+++..+..+++|+.|+|++|+
T Consensus 455 l~~n~l~~~~~~~~~-~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVF-AN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTCEEGGGEECSCC-TT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCcCCCcchHHhh-cc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 99999986 44444 33 89999999999999985 5678999999999999999999988888999999999999999
Q ss_pred CCCCCCCCcCCc-cceeecccCCccccCCcc
Q psy12423 274 LKMLPSLQKGFY-LLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 274 l~~ip~~~~~~~-~L~~~~l~~~~~~~~~~~ 303 (567)
|+.+|..+..+. .|...++..|++.|.+.+
T Consensus 533 l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 533 IETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999877776 588888888888766443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.8e-28 Score=266.78 Aligned_cols=285 Identities=21% Similarity=0.198 Sum_probs=210.9
Q ss_pred CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCC-CCC--CChhhhc-----cCcCchhhhhhccchhhccccccccCCc
Q psy12423 1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNR-ISH--LPVFLRH-----PMSPLNNVIEHGIAEEREEDFEQDEDGI 71 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~-i~~--lp~~~~~-----~L~~L~~l~~~~~~~~~~~~~~~~~~~l 71 (567)
|++|+|++|.+. .+|+.|+++++|++|+|++|+ ++. +|..++. .++.|+.+ ....+.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-------------~L~~n~l 317 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-------------YIGYNNL 317 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-------------ECCSSCC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE-------------ECCCCcC
Confidence 789999999877 789999999999999999998 885 8877653 12444443 2233333
Q ss_pred ccccC--CCCCCCCccEEEecCCCCCC-ccccCCCCCccEEEccCCCCCCCC--Cccccc-CcEEEcccCcccceecC--
Q psy12423 72 IVERR--EPEVKGELTSVNLRSNQLKG-TIILGNYGNLTTLDVSENSIESLD--LGALNR-LESIKCSRNQLKTLVLN-- 143 (567)
Q Consensus 72 ~~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~-L~~L~ls~n~l~~l~~~-- 143 (567)
...+. .+..+++|++|++++|++++ .+.+..+++|++|++++|.++.++ +..+++ |++|++++|.++.++..
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 33344 56678889999999998884 336777788888888888887664 677777 88888888888866532
Q ss_pred ---CCCCcEEEcCCCccccccCCCC---------CCcccEEecccCCCCCcccc-cCCCcCCcEEECcCCCCCCCChhhh
Q psy12423 144 ---GSSLISVIAGNNKLQSLIVSPR---------PARLQHLDISYNELESLPDW-IDTCPELETIFASHNRITQLPSQFF 210 (567)
Q Consensus 144 ---~~~L~~L~l~~n~l~~~~~~~~---------~~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~N~l~~l~~~~~ 210 (567)
+++|+.|++++|.+++..+..+ +.+|++|+|++|.++.+|.. +..+++|+.|+|++|.++.+|...+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 2368888888888877554332 35788888888888888764 4557888888888888888887766
Q ss_pred hccCC-------CccEEECCCCCCCCCchhhh--CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC------CcCC
Q psy12423 211 CRELG-------KLHTLQLSFNRLTSLPSLIR--QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK------NCLK 275 (567)
Q Consensus 211 ~~~l~-------~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~------N~l~ 275 (567)
.. .. +|+.|+|++|+++.+|..+. .+++|+.|+|++|+|+.+|..+ ..+++|+.|+|++ |++.
T Consensus 478 ~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP-LNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EE-TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGG-GGCSSCCEEECCSCBCTTCCBCC
T ss_pred cc-ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhh-hcCCCCCEEECCCCcccccCccc
Confidence 53 32 78888888888888887775 7888888888888888877665 4678888888844 4443
Q ss_pred -CCCCCCcCCccceeecccCCccccC
Q psy12423 276 -MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 276 -~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
.+|..+..+++|+.+++..|.+...
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred ccChHHHhcCCCCCEEECCCCcCCcc
Confidence 7777777777777777777776443
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.3e-26 Score=255.84 Aligned_cols=286 Identities=20% Similarity=0.159 Sum_probs=225.0
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.++.+ |..|.++++|++|+|++|.++.+++..+.+++.|+.+ ++..+....+. +..+.
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L----------~L~~n~i~~l~--~~~~~ 126 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL----------FFIQTGISSID--FIPLH 126 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE----------ECTTSCCSCGG--GSCCT
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe----------eccccCcccCC--cchhc
Confidence 78999999999977 6789999999999999999998877777778888766 22222222221 35567
Q ss_pred CCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCCC---CcccccCc--EEEcccCcccceecCC--------
Q psy12423 80 VKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESLD---LGALNRLE--SIKCSRNQLKTLVLNG-------- 144 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~--~L~ls~n~l~~l~~~~-------- 144 (567)
.+++|++|++++|.+.+. ..+..+++|++|++++|.++.+. +..+++|+ .|++++|.+..++...
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 889999999999999875 35556899999999999998864 56778888 8889998887654211
Q ss_pred -----------------------------------------------CCCcEEEcCCCccccccCCCC--CCcccEEecc
Q psy12423 145 -----------------------------------------------SSLISVIAGNNKLQSLIVSPR--PARLQHLDIS 175 (567)
Q Consensus 145 -----------------------------------------------~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls 175 (567)
.+|+.|++++|.++.+++..+ +++|++|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 167788888888888887766 7899999999
Q ss_pred cCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC-CCch-hhhCCCCCcEEEccCCCCCCC
Q psy12423 176 YNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPS-LIRQIASLKYLFLQSNSINIL 253 (567)
Q Consensus 176 ~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~l 253 (567)
+|.++.+|..+..+++|++|++++|.++.+++..+.. +++|++|++++|.+. .+|. .+..+++|++|++++|.++.+
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 9999999988999999999999999999876655554 888999999998877 4554 477888888888888888876
Q ss_pred c--hhhhcCCCCCcEEEccCCcCCCCC-CCCcCCccceeecccCCcccc
Q psy12423 254 P--QLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 254 ~--~~~l~~l~~L~~L~Ls~N~l~~ip-~~~~~~~~L~~~~l~~~~~~~ 299 (567)
+ +..+..+++|+.|++++|+++.++ ..+..+++|..+++..+.+..
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 5 455678888888888888887554 445566777777776665543
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5.4e-27 Score=262.35 Aligned_cols=291 Identities=20% Similarity=0.234 Sum_probs=154.7
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhh-ccchhhccccccccCCcccc-cCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH-GIAEEREEDFEQDEDGIIVE-RRE 77 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~-~~~~~~~~~~~~~~~~l~~~-~~~ 77 (567)
|++|+|++|.++.++ ..|..+++|++|+|++|.+.++++..+.+++.|+.+.-. +.... ......++.. ...
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-----SISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----------CCEECTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc-----ccccccccccChhh
Confidence 567888888887654 567888888888888888877666555566665554100 00000 0000011110 113
Q ss_pred CCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccC----------------------------CCCCCC---CCccc
Q psy12423 78 PEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSE----------------------------NSIESL---DLGAL 124 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~----------------------------n~l~~~---~~~~l 124 (567)
+..+++|++|++++|.+.+.. .+..+++|++|++++ |+++.+ .+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 344555555555555555433 244444444444444 444433 24455
Q ss_pred ccCcEEEcccCccccee-----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC---CcccccCCCcCCcE
Q psy12423 125 NRLESIKCSRNQLKTLV-----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE---SLPDWIDTCPELET 194 (567)
Q Consensus 125 ~~L~~L~ls~n~l~~l~-----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~ 194 (567)
++|+.|++++|.+.... ..+++|+.|++++|.+..+.+..+ +++|+.|++++|.+. .+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 66677777777665321 245566666666666655544444 455555555555543 33555556666666
Q ss_pred EECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch---------hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc
Q psy12423 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---------LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265 (567)
Q Consensus 195 L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~ 265 (567)
|++++|+++.++...+.. +++|++|+|++|.++.++. .+..+++|++|+|++|.|+.+|...|.++++|+
T Consensus 485 L~Ls~N~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCCCCcCChhhhcc-ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 666666666655554443 5556666666655554321 144555555555555555555555555555555
Q ss_pred EEEccCCcCCCCCCCCc-CCccceeecccCCcc
Q psy12423 266 VLNISKNCLKMLPSLQK-GFYLLNISQLRLPGF 297 (567)
Q Consensus 266 ~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~ 297 (567)
.|+|++|+|+.+|+..+ ++.+|..+++..|.+
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 55555555555555432 344444444444433
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.1e-26 Score=259.89 Aligned_cols=220 Identities=26% Similarity=0.339 Sum_probs=187.6
Q ss_pred CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC-C---CCcccccCcEEEcccCccccee----cCCCCCcEEE
Q psy12423 82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES-L---DLGALNRLESIKCSRNQLKTLV----LNGSSLISVI 151 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~ 151 (567)
++|+.|++++|++++.. .+..+++|+.|++++|.+.. + .+..+++|++|++++|++..+. ..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 57889999999988764 68889999999999999874 3 3778899999999999988765 3578999999
Q ss_pred cCCCccccc--cCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChh--------hhhccCCCcc
Q psy12423 152 AGNNKLQSL--IVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQ--------FFCRELGKLH 218 (567)
Q Consensus 152 l~~n~l~~~--~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~--------~~~~~l~~L~ 218 (567)
+++|.++.. .+..+ +++|+.|++++|.++.+|. .+..+++|+.|++++|.++.++.. .+.. +++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~-l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG-LSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT-CTTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC-CCCCC
Confidence 999998743 33333 8899999999999998864 689999999999999999876332 2444 89999
Q ss_pred EEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc--CCccceeecccCC
Q psy12423 219 TLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK--GFYLLNISQLRLP 295 (567)
Q Consensus 219 ~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~~~L~~~~l~~~ 295 (567)
.|+|++|+++.+|. .+..+++|+.|+|++|+|+.+|+..|..+++|+.|+|++|+|+.+|+..+ .+.+|...++..|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 99999999999987 58999999999999999999999999999999999999999999987654 4677888888888
Q ss_pred ccccCCc
Q psy12423 296 GFCNSDA 302 (567)
Q Consensus 296 ~~~~~~~ 302 (567)
+|.|.|.
T Consensus 620 ~~~c~c~ 626 (680)
T 1ziw_A 620 PFDCTCE 626 (680)
T ss_dssp CCCBCCC
T ss_pred CcccCCc
Confidence 8876654
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.7e-27 Score=257.81 Aligned_cols=334 Identities=19% Similarity=0.206 Sum_probs=210.8
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
+++|||++|.|+.+|+ +|.++++|++|+|++|+|+.+|+..|.+++.|+.+ ++..+....++ ...+.
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L----------~Ls~N~l~~l~--~~~f~ 121 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL----------ILTGNPIQSLA--LGAFS 121 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE----------ECTTCCCCEEC--GGGGT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEE----------EccCCcCCCCC--HHHhc
Confidence 5789999999999874 79999999999999999999998888888888776 12222222222 13456
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceecC----------
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVLN---------- 143 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~~---------- 143 (567)
.+++|++|+|++|++++.. .|+++++|++|++++|.++.+. +..+++|++|++++|+++.+...
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 7778888888888877665 4777788888888888776542 45567777777777765432100
Q ss_pred --------------------------------------------------------------------------------
Q psy12423 144 -------------------------------------------------------------------------------- 143 (567)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (567)
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence
Q ss_pred ---------------------------------------------CCCCcEEEcCCCccccccCC---------------
Q psy12423 144 ---------------------------------------------GSSLISVIAGNNKLQSLIVS--------------- 163 (567)
Q Consensus 144 ---------------------------------------------~~~L~~L~l~~n~l~~~~~~--------------- 163 (567)
...++.|++.+|.+..+...
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 01122222222222211110
Q ss_pred ------CCCCcccEEecccCCCC--------------------------Ccc-------------------------ccc
Q psy12423 164 ------PRPARLQHLDISYNELE--------------------------SLP-------------------------DWI 186 (567)
Q Consensus 164 ------~~~~~L~~L~Ls~n~l~--------------------------~lp-------------------------~~l 186 (567)
..+++|+.|++++|.+. .++ ..+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 00345555555555432 001 123
Q ss_pred CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCC
Q psy12423 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264 (567)
Q Consensus 187 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L 264 (567)
..+.+++.++++.|.+..++...+.. ++.|+.|+|++|.+.. +|..+..+++|++|+|++|+|+++++..|.++++|
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~-~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccc-chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 44556666666666666555555544 6677777777775432 45566777777777777777777777777777777
Q ss_pred cEEEccCCcCCCCCCC-CcCCccceeecccCCccccC--Ccc------eeeccCCCCchhhhHHhhhhHHHHHhhhhhhh
Q psy12423 265 KVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DAL------IGIFDSGDNGDIASTLVQSIPRILLEERTVKE 335 (567)
Q Consensus 265 ~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~------~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~ 335 (567)
++|+|++|+|+.+|+. +.++++|+.++++.|.+.+. ..+ ...++-++++..|+|-..++..|+.+......
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~ 600 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence 7777777777777654 33566777777776666544 111 22344566777777777788888876655444
Q ss_pred hhhHHHHHHHHH
Q psy12423 336 TASDYMKYTMLT 347 (567)
Q Consensus 336 ~~~~~l~~a~l~ 347 (567)
...++.|..+..
T Consensus 601 ~~~~~~C~~P~~ 612 (635)
T 4g8a_A 601 EVERMECATPSD 612 (635)
T ss_dssp CGGGCBBCSSTT
T ss_pred CCCCceeCCchH
Confidence 445566665543
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1e-26 Score=253.39 Aligned_cols=133 Identities=23% Similarity=0.319 Sum_probs=82.1
Q ss_pred CCcccEEecccCCCCC-cc---cccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423 166 PARLQHLDISYNELES-LP---DWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~-lp---~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 239 (567)
+++|++|++++|.++. +| ..+..+++|++|++++|.++.++. ..+.. +++|++|+|++|+++.+|..+..+++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT-LKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG-CTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc-CCCCCEEECCCCCCccCChhhccccc
Confidence 4556666666666553 22 234556666666666666665543 22333 66777777777777766666666666
Q ss_pred CcEEEccCCCCCCCchhhh-----------------cCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 240 LKYLFLQSNSINILPQLFL-----------------QNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 240 L~~L~Ls~N~l~~l~~~~l-----------------~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
|++|++++|.|+.+|..+. ..+++|++|+|++|+|+.||.. ..++.|..+++..|.+.+.
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-GGCTTCCEEECCSSCCCCC
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-ccCccCCEEecCCCccCCc
Confidence 6666666666665554321 2567778888888888877763 4566677777766666544
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.5e-26 Score=248.56 Aligned_cols=280 Identities=21% Similarity=0.172 Sum_probs=209.4
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPEV 80 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 80 (567)
+++++++|+++.+|..+. ++|++|+|++|.|+.+++..+..++.|+.+ +...+.+... +..+..
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L-------------~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVL-------------RLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEE-------------ECCSCCCCEECTTTTTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEE-------------ECCCCCCCcCCHHHhCC
Confidence 579999999999998665 899999999999999998888888888776 3333333332 456788
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCccccee-cCCCCC--cEEEcC
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLV-LNGSSL--ISVIAG 153 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~-~~~~~L--~~L~l~ 153 (567)
+++|++|+|++|+++..... .+++|++|++++|.++.++ ++.+++|++|++++|.+.... ..+++| +.|+++
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEE
T ss_pred CCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEee
Confidence 99999999999999965544 8999999999999998854 678899999999999988643 334555 999999
Q ss_pred CCcc--ccccCCCC--C---------------------------------------------------------------
Q psy12423 154 NNKL--QSLIVSPR--P--------------------------------------------------------------- 166 (567)
Q Consensus 154 ~n~l--~~~~~~~~--~--------------------------------------------------------------- 166 (567)
+|.+ +...+..+ +
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9887 33322211 1
Q ss_pred ------------------CcccEEecccCCCC-Cccccc-----------------------------------------
Q psy12423 167 ------------------ARLQHLDISYNELE-SLPDWI----------------------------------------- 186 (567)
Q Consensus 167 ------------------~~L~~L~Ls~n~l~-~lp~~l----------------------------------------- 186 (567)
.+|++|++++|.++ .+|..+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 26777888888776 666544
Q ss_pred ------------CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc---hhhhCCCCCcEEEccCCCCC
Q psy12423 187 ------------DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP---SLIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 187 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~ 251 (567)
..+++|++|++++|.++...+..+.. +++|++|+|++|+++.++ ..+..+++|++|++++|.++
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 56678888888888888643333333 788888888888888765 35678888888888888888
Q ss_pred C-CchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423 252 I-LPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 252 ~-l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
. +|...+..+++|+.|++++|+++ .+|.... .+|..+++..|.+...
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 7 88777778888888888888886 4444332 3455555555554433
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.1e-27 Score=267.77 Aligned_cols=299 Identities=23% Similarity=0.291 Sum_probs=223.6
Q ss_pred CcEEEccCCCCC-cCCcc-CCCCCCCCEEeCcCCCCC-CCChhhhc---cCcCchhhhhhccchh-----------hccc
Q psy12423 1 LQEFRVDRNDLT-EFPGN-QDSFPRLKFLSAAQNRIS-HLPVFLRH---PMSPLNNVIEHGIAEE-----------REED 63 (567)
Q Consensus 1 L~~L~Ls~n~l~-~lp~~-~~~l~~L~~L~Ls~n~i~-~lp~~~~~---~L~~L~~l~~~~~~~~-----------~~~~ 63 (567)
|++|+|++|.++ .+|.. |.++++|++|+|++|.++ .+|..+.. .|+.|... .+.+... .+..
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls-~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS-SNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC-SSEEEEECCTTTTCSTTCCCCE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc-CCCcCCCcChhhhhcccCCccE
Confidence 689999999998 88865 899999999999999998 67776653 23333221 1111100 0111
Q ss_pred cccccCCcc-cccCCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCcc
Q psy12423 64 FEQDEDGII-VERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQL 137 (567)
Q Consensus 64 ~~~~~~~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l 137 (567)
.....+.+. ..+..+..+++|++|+|++|.+++.. .+..+++|+.|++++|.+.+. .+..+++|++|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 111222222 23345567788888888888887644 577888888888888888753 266788889999999888
Q ss_pred ccee----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhh
Q psy12423 138 KTLV----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQF 209 (567)
Q Consensus 138 ~~l~----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~ 209 (567)
.+.. ..+++|+.|++++|.+++..+..+ +++|++|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 7543 356888999999999887766665 788999999999888 67888888999999999999887 666554
Q ss_pred hhc--------------------------------------------------------------------cCCCccEEE
Q psy12423 210 FCR--------------------------------------------------------------------ELGKLHTLQ 221 (567)
Q Consensus 210 ~~~--------------------------------------------------------------------~l~~L~~L~ 221 (567)
+.. .+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 320 135688899
Q ss_pred CCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCcccc
Q psy12423 222 LSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 222 Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~ 299 (567)
|++|++++ +|..++.++.|+.|+|++|.+++..+..++++++|+.|||++|+++ .+|..+..+..|..+++..|.+.+
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999885 8888999999999999999998555555688999999999999998 888888888888888888887765
Q ss_pred C
Q psy12423 300 S 300 (567)
Q Consensus 300 ~ 300 (567)
.
T Consensus 719 ~ 719 (768)
T 3rgz_A 719 P 719 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=9.4e-27 Score=256.38 Aligned_cols=279 Identities=22% Similarity=0.235 Sum_probs=234.1
Q ss_pred CcEEEccCCCCCcCCcc-CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGN-QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
++.|++++|.++.+|.. |..+++|++|+|++|.|+.+++..+..++.|+.+ ++..+...+++ +..+.
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~--~~~~~ 120 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL----------YMGFNAIRYLP--PHVFQ 120 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEE----------ECCSSCCCCCC--TTTTT
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEE----------ECCCCcCCCCC--HHHHc
Confidence 57899999999999864 7889999999999999999888777778877766 22223333322 24567
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-cCCCCCcEEEcC
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV-LNGSSLISVIAG 153 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~ 153 (567)
.+++|++|+|++|.++..+ .+..+++|++|++++|.++.++ +..+++|++|++++|.+..++ ..+++|+.|+++
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 8899999999999999876 3789999999999999998874 678899999999999999876 457899999999
Q ss_pred CCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-ch
Q psy12423 154 NNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PS 232 (567)
Q Consensus 154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~ 232 (567)
+|.++.+.. +.+|+.|++++|.+..+|..+ .++|+.|+|++|.++..+ .+ .. +++|+.|+|++|.++++ |.
T Consensus 201 ~n~l~~l~~---~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~-~l-~~-l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 201 YNLLSTLAI---PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WL-LN-YPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SSCCSEEEC---CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCG-GG-GG-CTTCSEEECCSSCCCEEESG
T ss_pred cCccccccC---CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCCh-hh-cc-CCCCCEEECCCCccCCCCHH
Confidence 999887643 468999999999999887644 368999999999999863 33 33 89999999999999985 67
Q ss_pred hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
.+..+++|+.|+|++|.++.+|... ..+++|+.|+|++|+++.+|..+..++.|..+++..|.+...
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred HhcCccCCCEEECCCCCCCCCCccc-ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 8999999999999999999988764 679999999999999999998888888888888888877654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.6e-25 Score=238.05 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=174.7
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|++|++++|.++.+| .|..+++|++|+|++|.|+++| +..++.|+.+ ++..+...++ .+..
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L----------~Ls~N~l~~~-----~~~~ 104 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYL----------ACDSNKLTNL-----DVTP 104 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEE----------ECCSSCCSCC-----CCTT
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEE----------ECcCCCCcee-----ecCC
Confidence 688999999999887 6889999999999999999886 3456666554 2222233332 2567
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCc-cccee-cCCCCCcEEEcCCCccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQ-LKTLV-LNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~~L~~L~l~~n~l~ 158 (567)
+++|++|++++|++++. +++.+++|++|++++|.++.++++.+++|++|++++|. +..+. ..+++|+.|++++|.++
T Consensus 105 l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence 78888888888888775 47778888888888888888777777788888887773 33332 34567777777777777
Q ss_pred cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-----
Q psy12423 159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL----- 233 (567)
Q Consensus 159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----- 233 (567)
.++ ...+++|+.|++++|.++.++ +..+++|+.|++++|+++.+| + .. +++|+.|++++|+++++|..
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~-~~-l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--V-TP-LTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TT-CTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred eec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--c-cc-cCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 754 222566777777777776653 566677777777777777665 2 22 66677777777766665420
Q ss_pred -------------------------hhCCCCCcEEEccCCCCC-CCchh-------hhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 234 -------------------------IRQIASLKYLFLQSNSIN-ILPQL-------FLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 234 -------------------------~~~l~~L~~L~Ls~N~l~-~l~~~-------~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
+..+++|+.|++++|... .+|.. .+..+++|+.|++++|+|+.+|
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-- 334 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-- 334 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--
T ss_pred CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--
Confidence 122344444444444311 11110 1345566666667777666664
Q ss_pred CcCCccceeecccCCcccc
Q psy12423 281 QKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 281 ~~~~~~L~~~~l~~~~~~~ 299 (567)
+..++.|..+++..|.+.+
T Consensus 335 l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB
T ss_pred cccCCcCcEEECCCCCCCC
Confidence 4555666666666655554
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.5e-26 Score=232.15 Aligned_cols=256 Identities=14% Similarity=0.238 Sum_probs=211.6
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.|+.++. .|.++++|++|+|++|.++.+++..+..++.|+.+ +...+.+...+. .
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~Ls~n~l~~l~~--~ 118 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL-------------YLSKNQLKELPE--K 118 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-------------ECCSSCCSBCCS--S
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE-------------ECCCCcCCccCh--h
Confidence 6789999999999875 79999999999999999999866666777777765 222222222222 2
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C---CCcccccCcEEEcccCcccceecC-CCCCcEEE
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L---DLGALNRLESIKCSRNQLKTLVLN-GSSLISVI 151 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~---~~~~l~~L~~L~ls~n~l~~l~~~-~~~L~~L~ 151 (567)
..++|++|++++|.++... .+..+++|++|++++|.+.. . .+..+++|++|++++|.++.++.. .++|+.|+
T Consensus 119 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~ 198 (330)
T 1xku_A 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198 (330)
T ss_dssp CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEE
T ss_pred hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEE
Confidence 2379999999999999876 58899999999999999974 2 367789999999999999988743 47999999
Q ss_pred cCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423 152 AGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 152 l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
+++|.++...+..+ +++|++|++++|.++.++. ++..+++|+.|+|++|.++.+|..+.. +++|++|+|++|.|+
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNIS 276 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT--CSSCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc--CCCcCEEECCCCcCC
Confidence 99999999876665 8899999999999997754 789999999999999999999988754 899999999999999
Q ss_pred CCchh-hh------CCCCCcEEEccCCCCC--CCchhhhcCCCCCcEEEccCCc
Q psy12423 229 SLPSL-IR------QIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 229 ~lp~~-~~------~l~~L~~L~Ls~N~l~--~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
.++.. +. ..+.|+.|++++|.+. .+++..|..+.+|+.++|++|+
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 98753 32 2478999999999997 4777788899999999999985
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.3e-26 Score=250.67 Aligned_cols=169 Identities=25% Similarity=0.241 Sum_probs=120.7
Q ss_pred ccccCcEEEcccCccccee-------cCCCCCcEEEcCCCccccccC----CCCCCcccEEecccCCCCCcccccCCCcC
Q psy12423 123 ALNRLESIKCSRNQLKTLV-------LNGSSLISVIAGNNKLQSLIV----SPRPARLQHLDISYNELESLPDWIDTCPE 191 (567)
Q Consensus 123 ~l~~L~~L~ls~n~l~~l~-------~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~ 191 (567)
.+++|++|++++|++.+.. ..+++|+.|++++|.++.++. ...+++|++|++++|+++.+|..+..+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 3556666666666665421 234566666666666665542 11156677777777777766666666677
Q ss_pred CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC
Q psy12423 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271 (567)
Q Consensus 192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~ 271 (567)
|++|++++|.++.++..+ +++|+.|+|++|++++++ ..+++|++|+|++|+|+.+|.. ..+++|+.|+|++
T Consensus 412 L~~L~Ls~N~l~~l~~~~----~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISR 482 (549)
T ss_dssp CCEEECTTSCCSCCCTTS----CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCS
T ss_pred ccEEECCCCCcccccchh----cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCC
Confidence 777777777776666543 346777777777777654 4789999999999999999974 4789999999999
Q ss_pred CcCCCCCCC-CcCCccceeecccCCccccC
Q psy12423 272 NCLKMLPSL-QKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 272 N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~ 300 (567)
|+|+.+|+. +..+..|..+++..|.+.|.
T Consensus 483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 999988876 56788898888888887654
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=251.11 Aligned_cols=154 Identities=22% Similarity=0.238 Sum_probs=77.8
Q ss_pred CCCcEEEcCCCcccccc--CCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCC-----------------
Q psy12423 145 SSLISVIAGNNKLQSLI--VSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT----------------- 203 (567)
Q Consensus 145 ~~L~~L~l~~n~l~~~~--~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~----------------- 203 (567)
++|+.|++++|.++... +..+ +++|++|++++|.+..+|..+..+++|++|++++|.+.
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 45556666666655442 1111 45566666666655554444445555555555555444
Q ss_pred --------CCChhhhhccCCCccEEECCCCCCC--CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423 204 --------QLPSQFFCRELGKLHTLQLSFNRLT--SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 204 --------~l~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
.++...+.. +++|++|+|++|.++ .+|..+..+++|++|+|++|.++.+++..+..+++|+.|++++|+
T Consensus 427 ~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp ECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eCcCCcccccchhhhhc-CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 333333332 445555555555544 244445555555555555555555544444555555555555555
Q ss_pred CCCCCCC-CcCCccceeecccCCcccc
Q psy12423 274 LKMLPSL-QKGFYLLNISQLRLPGFCN 299 (567)
Q Consensus 274 l~~ip~~-~~~~~~L~~~~l~~~~~~~ 299 (567)
++.+|+. +..+++|...++..|.+.|
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccC
Confidence 5555443 2344555555555554443
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=6e-26 Score=231.44 Aligned_cols=255 Identities=15% Similarity=0.246 Sum_probs=210.9
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..+..++.|+.+ +...+.+...+...
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~- 121 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL-------------YISKNHLVEIPPNL- 121 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE-------------ECCSSCCCSCCSSC-
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE-------------ECCCCcCCccCccc-
Confidence 689999999999885 579999999999999999999877777778887766 22222222222222
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C---CCcccccCcEEEcccCcccceecC-CCCCcEEE
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L---DLGALNRLESIKCSRNQLKTLVLN-GSSLISVI 151 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~---~~~~l~~L~~L~ls~n~l~~l~~~-~~~L~~L~ 151 (567)
.++|++|++++|+++... .+..+++|+.|++++|.++. . .+..+ +|++|++++|.++.++.. .++|+.|+
T Consensus 122 -~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 122 -PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp -CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred -cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEE
Confidence 279999999999999876 48899999999999999964 2 24455 899999999999988744 36899999
Q ss_pred cCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423 152 AGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 152 l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
+++|.++...+..+ +++|++|++++|.++.++. ++..+++|+.|++++|+++.+|..+.. +++|+.|++++|+|+
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD--LKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG--CTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc--CccCCEEECCCCCCC
Confidence 99999999987666 8899999999999998864 789999999999999999999988654 999999999999999
Q ss_pred CCch-hhhC------CCCCcEEEccCCCCC--CCchhhhcCCCCCcEEEccCCc
Q psy12423 229 SLPS-LIRQ------IASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 229 ~lp~-~~~~------l~~L~~L~Ls~N~l~--~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
.++. .+.. ...|+.|++++|.+. .+++..|..+++|+.|++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8765 3322 467999999999998 7888888999999999999985
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=6.2e-26 Score=257.05 Aligned_cols=297 Identities=21% Similarity=0.227 Sum_probs=171.7
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhh--hhccchh-------hccccccccCCc
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVI--EHGIAEE-------REEDFEQDEDGI 71 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~--~~~~~~~-------~~~~~~~~~~~l 71 (567)
|++|+|++|.++..++.++++++|++|+|++|.+++..+..+..++.|+.+. .+.+... .+...+...+.+
T Consensus 202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281 (768)
T ss_dssp CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred CCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence 6788888888885443488888888888888888864444445566666541 1111100 000011111111
Q ss_pred c-cccCCCCC-CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCC-CCC---CcccccCcEEEcccCcccce-ec
Q psy12423 72 I-VERREPEV-KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE-SLD---LGALNRLESIKCSRNQLKTL-VL 142 (567)
Q Consensus 72 ~-~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~-~~~---~~~l~~L~~L~ls~n~l~~l-~~ 142 (567)
. ..+..+.. +++|++|+|++|.+++.. .++.+++|++|++++|.+. .++ +..+++|++|++++|.+.+. +.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 1 11222222 366777777777665433 4666677777777777665 333 55666777777777766532 21
Q ss_pred ---CCC-CCcEEEcCCCccccccCCCC----CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhcc
Q psy12423 143 ---NGS-SLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRE 213 (567)
Q Consensus 143 ---~~~-~L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 213 (567)
.++ +|+.|++++|.+++..+..+ +++|++|++++|.++ .+|.++..+++|+.|++++|.++...+..+..
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 440 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS- 440 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-
Confidence 122 56666666666654433332 345666666666666 45666666666666666666666332222322
Q ss_pred CCCccEEECCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeec
Q psy12423 214 LGKLHTLQLSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQ 291 (567)
Q Consensus 214 l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~ 291 (567)
+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+++..+..+.++++|+.|+|++|+++ .+|..+..+++|..++
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 6666666666666663 5666666666666666666666444444556666666666666666 5565555666666666
Q ss_pred ccCCccc
Q psy12423 292 LRLPGFC 298 (567)
Q Consensus 292 l~~~~~~ 298 (567)
+..|.+.
T Consensus 521 L~~N~l~ 527 (768)
T 3rgz_A 521 LSNNSFS 527 (768)
T ss_dssp CCSSCCE
T ss_pred CCCCccc
Confidence 6665554
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=9.2e-26 Score=246.83 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=88.5
Q ss_pred CCcccEEecccCCCCCc---ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCC
Q psy12423 166 PARLQHLDISYNELESL---PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASL 240 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L 240 (567)
+++|++|++++|.++.+ |..+..+++|++|++++|.+..++.. +.. +++|++|++++|.+..++. .+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET-CTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc-cCCCCEEEccCCccccccchhhhhcCCCC
Confidence 56788888888888855 56788999999999999999988776 333 7788888888877766432 45666677
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeecccCCc
Q psy12423 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLRLPG 296 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l~~~~ 296 (567)
++|++++|.+..+++..+..+++|+.|++++|+++ .+|..+..+++|+.+++..|.
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 77777777666655555556666666666666654 355544445544444444443
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.8e-25 Score=235.47 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=159.1
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG 153 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~ 153 (567)
+++.|+|++|+++... .|.++++|++|+|++|.++.++ +..+++|++|++++|+++.++. .+++|+.|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 4556666666665543 4556666666666666665543 4455666666666666665542 34667777777
Q ss_pred CCccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 154 NNKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 154 ~n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+|.++.++...+ +++|++|+|++ +.+..++. .|..+++|++|+|++|.++.+|. + .. +++|+.|+|++|.|+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~-l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TP-LIKLDELDLSGNHLSA 221 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TT-CSSCCEEECTTSCCCE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CC-CcccCEEECCCCccCc
Confidence 777776666555 77888888888 45666654 68888899999999999888875 2 22 7889999999998887
Q ss_pred C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccCCcc
Q psy12423 230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~~~~ 303 (567)
+ |..+..+++|+.|+|++|.|+.+++..|.++++|+.|+|++|+|+.+|...+ .+.+|..+++..|+|.|.|.+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 5 5678888899999999999998888888888999999999999998887654 677888888888887666543
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=6.5e-26 Score=228.35 Aligned_cols=238 Identities=25% Similarity=0.254 Sum_probs=132.4
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
+.++++++.++++|..+. ++|++|+|++|.++.+|..++. .+
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~------------------------------------~l 51 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFD------------------------------------KL 51 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTT------------------------------------TC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhh------------------------------------cc
Confidence 467788888888887554 5788888888888887765532 34
Q ss_pred CCccEEEecCCCCCCc----cccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423 82 GELTSVNLRSNQLKGT----IILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN 155 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n 155 (567)
++|++|+|++|.++.. ..+..+++|++|++++|.+..++ +..+++|++|++++|.+..+.
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~-------------- 117 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-------------- 117 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESST--------------
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccc--------------
Confidence 4777788888877643 13445677777777777776553 455666666666666555443
Q ss_pred ccccccC-CCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCC--CChhhhhccCCCccEEECCCCCCCC
Q psy12423 156 KLQSLIV-SPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 156 ~l~~~~~-~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
. ..+ +++|++|++++|.+..+ +..+..+++|++|++++|.++. +|..+. . +++|++|+|++|.++.
T Consensus 118 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~-l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 118 ------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-E-LRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp ------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-T-CTTCCEEECTTSCCCE
T ss_pred ------cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-h-CcCCCEEECCCCCcCC
Confidence 2 111 34455555555555422 3344455555555555555543 232222 1 4555555555555554
Q ss_pred C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC-CCcCC-ccceeecccCCcccc
Q psy12423 230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS-LQKGF-YLLNISQLRLPGFCN 299 (567)
Q Consensus 230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~-~~~~~-~~L~~~~l~~~~~~~ 299 (567)
+ |..+..+++|++|+|++|.++.+++..+..+++|+.|+|++|+++.+++ .+..+ ..|..+++..|.+.+
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 3 3344555555555555555555554444555555555555555553322 22333 244444444444433
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.7e-26 Score=233.65 Aligned_cols=258 Identities=20% Similarity=0.188 Sum_probs=200.4
Q ss_pred EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423 3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG 82 (567)
Q Consensus 3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 82 (567)
..+++++.++++|..+. ++|++|+|++|.|+.+|...+ ..++
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~------------------------------------~~l~ 76 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDL------------------------------------QRCV 76 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTT------------------------------------TTCT
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHh------------------------------------ccCC
Confidence 45778888888887655 478888888888887765443 3456
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec-----CCCCCcEEEc
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL-----NGSSLISVIA 152 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~-----~~~~L~~L~l 152 (567)
+|++|++++|++++.. .+..+++|++|++++|.++.++ +..+++|++|++++|+++.++. .+++|+.|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 7888888888888754 4778888888888888888875 5678888888888888877653 4678888888
Q ss_pred CCC-ccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423 153 GNN-KLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228 (567)
Q Consensus 153 ~~n-~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 228 (567)
++| .++.+.+..+ +++|++|++++|.++.+ |..+..+++|++|++++|.++.++...+.. +++|+.|++++|.++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDTDLD 235 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-TTTEEEEEEESCBCT
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-cccccEEECCCCccc
Confidence 888 4777766555 78899999999998865 678888899999999999998888777655 889999999999888
Q ss_pred CCch----hhhCCCCCcEEEccCCCCCC-----CchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccc
Q psy12423 229 SLPS----LIRQIASLKYLFLQSNSINI-----LPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFC 298 (567)
Q Consensus 229 ~lp~----~~~~l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~ 298 (567)
.++. .......++.++++++.++. +|. .+..+++|+.|++++|+|+.+|... ..+++|..+++..|.+.
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 7542 12346678888888888774 443 3578889999999999999998875 57788888888888776
Q ss_pred cC
Q psy12423 299 NS 300 (567)
Q Consensus 299 ~~ 300 (567)
+.
T Consensus 315 ~~ 316 (353)
T 2z80_A 315 CS 316 (353)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 43
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=229.86 Aligned_cols=173 Identities=17% Similarity=0.261 Sum_probs=142.4
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-------------hhhhhHHHHHHHHHHHHHHhhhcc----cccCce
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-------------KETASDYMKYTMLTAHREIKDSLH----RYSLSA 363 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-------------~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st 363 (567)
..++.++||+++...+.+....++..+.+...+ .....+++..+|..+++.+..... ...+++
T Consensus 55 ~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~Gt 134 (307)
T 2p8e_A 55 WSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS 134 (307)
T ss_dssp EEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Confidence 468999999999999999998888877653222 123478899999999998876532 234566
Q ss_pred eEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC
Q psy12423 364 TLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC 416 (567)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~ 416 (567)
|++.+.+.+. ++++||+||||+|++|+|+..+||+||+ ++|++|+..++
T Consensus 135 T~~~~~i~~~----~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~~rI~~~gg~v~~~rv~g~l~ltRalGd~~~k 210 (307)
T 2p8e_A 135 TAVGVMISPK----HIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYK 210 (307)
T ss_dssp CEEEEEECSS----EEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTEETTTBSCSBCEECGGGS
T ss_pred eEEEEEEECC----cEEEEEccCcEEEEEECCccccCCCCCCCCCHHHHHHHHHcCCEEEeCcccCeEeccccccCHHHh
Confidence 6666666665 8999999999999999999999999997 46888886543
Q ss_pred ---------CCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCc
Q psy12423 417 ---------PLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNL 467 (567)
Q Consensus 417 ---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dni 467 (567)
++++++||+..+++.++|+|||||||||| +++.+|++|++.|+.+|+.|||
T Consensus 211 ~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNi 290 (307)
T 2p8e_A 211 CVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNM 290 (307)
T ss_dssp CCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred cCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCcccCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCe
Confidence 56789999999999999999999999999 5778999999999999999999
Q ss_pred EEEEEEeCCC
Q psy12423 468 SVLVLRFQGS 477 (567)
Q Consensus 468 t~~vv~~~~~ 477 (567)
|||||++..+
T Consensus 291 Tvivv~~~~~ 300 (307)
T 2p8e_A 291 SIVLVCFSNE 300 (307)
T ss_dssp EEEEEEC---
T ss_pred EEEEEECCCC
Confidence 9999998744
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=5.6e-25 Score=233.76 Aligned_cols=224 Identities=28% Similarity=0.314 Sum_probs=104.6
Q ss_pred CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCccccC
Q psy12423 22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG 101 (567)
Q Consensus 22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~ 101 (567)
++|++|++++|.++++|. +..++.|+.+ ++..+...+++ ...++|++|++++|++++...++
T Consensus 131 ~~L~~L~L~~n~l~~lp~--~~~l~~L~~L----------~l~~N~l~~lp------~~~~~L~~L~L~~n~l~~l~~~~ 192 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE--LQNSSFLKII----------DVDNNSLKKLP------DLPPSLEFIAAGNNQLEELPELQ 192 (454)
T ss_dssp TTCCEEECCSSCCSSCCC--CTTCTTCCEE----------ECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCEEECcCCCCCCCcc--cCCCCCCCEE----------ECCCCcCcccC------CCcccccEEECcCCcCCcCcccc
Confidence 456666666666666662 3344444443 11111111111 11235555555555555544455
Q ss_pred CCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCC
Q psy12423 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l 179 (567)
.+++|++|++++|.++.++- ..++|++|++++|.+..++ ..+++|+.|++++|+++.++. .+++|++|++++|.+
T Consensus 193 ~l~~L~~L~l~~N~l~~l~~-~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKLPD-LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYL 269 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcCCcCCC-CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcc
Confidence 55555555555555554321 1234555555555554433 233445555555555544332 134555555555555
Q ss_pred CCcccccCCCcCCcEEECcCCCCCCCChhh---------------hhccCCCccEEECCCCCCCCCchhhhCCCCCcEEE
Q psy12423 180 ESLPDWIDTCPELETIFASHNRITQLPSQF---------------FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244 (567)
Q Consensus 180 ~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~---------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 244 (567)
+.+|.. +++|+.|++++|.++.++... +...+++|+.|++++|+++++|.. +++|++|+
T Consensus 270 ~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 270 TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLI 343 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEE
Confidence 544432 244555555555544433210 000023455555555555554442 34555555
Q ss_pred ccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
+++|.++.+|. .+++|+.|++++|+++.
T Consensus 344 L~~N~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 344 ASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CCCCccccccc----hhhhccEEECCCCCCCc
Confidence 55555555554 24455555555555554
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.9e-25 Score=235.19 Aligned_cols=218 Identities=20% Similarity=0.254 Sum_probs=161.2
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG 153 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~ 153 (567)
+|++|+|++|+++... .|..+++|++|+|++|.++.++ +..+++|++|++++|.++.++. .+++|+.|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 5666666666666543 4666666666666666666543 4556666667776666665542 35677777777
Q ss_pred CCccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 154 NNKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 154 ~n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+|.++.++...+ +++|++|++++ |.+..++. .|..+++|+.|+|++|.++.+|. + .. +++|+.|+|++|.|++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~-l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-L-TP-LVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-C-TT-CTTCCEEECTTSCCSE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-c-cc-cccccEEECcCCcCcc
Confidence 777777666555 77888888887 45666654 67888889999999998888875 2 22 7888999999998887
Q ss_pred C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccCCcc
Q psy12423 230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~~~~ 303 (567)
+ |..+..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|...+ .+.+|..+++..|.|.|.|.+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 5 5678888899999999999888888878888899999999999988887644 577788888888887766554
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=260.43 Aligned_cols=283 Identities=20% Similarity=0.205 Sum_probs=227.4
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.+..+ |..|..+++|+.|+|++|.|+.+++..+.+++.|+.+ ++..+....+ .+..+.
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L----------~Ls~N~l~~~--~~~~~~ 335 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL----------NLSYNLLGEL--YSSNFY 335 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE----------EEESCCCSCC--CSCSCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE----------ECCCCCCCcc--CHHHhc
Confidence 57899999999976 4678999999999999999998877777778877765 2222222222 235667
Q ss_pred CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423 80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l 157 (567)
.+++|++|++++|.+.... .+..+++|++|++++|.++.++. +++|+.|++++|++..++....+++.|++++|.+
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcccccccccccceeecccCcc
Confidence 8899999999999998766 58889999999999999987654 8889999999999998887788999999999999
Q ss_pred ccccCCCC---CCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCC-----hhhhhccCCCccEEECCCCCC
Q psy12423 158 QSLIVSPR---PARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLP-----SQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 158 ~~~~~~~~---~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~l 227 (567)
+.+....+ +++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.++ ...+.. +++|+.|+|++|.|
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG-LSHLQVLYLNHNYL 492 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-BCCEECCCCCHHHH
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC-cccccEEECCCCcc
Confidence 88765432 7899999999999997643 4667899999999999997433 344554 89999999999999
Q ss_pred CCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423 228 TSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA 302 (567)
Q Consensus 228 ~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~ 302 (567)
+++|. .+..+++|+.|+|++|+|+.+|+..+. ++|+.|+|++|+|+.+++..+ ..|..+++..|+|.|.|.
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECE 564 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSS
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCcccccc
Confidence 98765 578999999999999999999987764 899999999999997776543 356666666666655543
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2e-24 Score=229.69 Aligned_cols=251 Identities=22% Similarity=0.297 Sum_probs=153.6
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|++|+|++|.|+.+| ++.+++|++|++++|.|+++| +..++.|+.+ ++..+...++ .+..
T Consensus 66 L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L----------~L~~N~l~~l-----~~~~ 125 (457)
T 3bz5_A 66 LTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL----------NCDTNKLTKL-----DVSQ 125 (457)
T ss_dssp CSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEE----------ECCSSCCSCC-----CCTT
T ss_pred CCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEE----------ECCCCcCCee-----cCCC
Confidence 678888888888886 788888888888888888875 3455555554 1112222221 1455
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCC-CCCCCCCcccccCcEEEcccCccccee-cCCCCCcEEEcCCCccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~~n~l~ 158 (567)
+++|++|++++|++++. .++.+++|++|++++| .+..+++..+++|++|++++|+++.++ ..+++|+.|++++|.++
T Consensus 126 l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCS
T ss_pred CCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCC
Confidence 66666666666666653 3555555555555555 344444555555555555555555543 23345555555555555
Q ss_pred cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhh---------------------------
Q psy12423 159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFC--------------------------- 211 (567)
Q Consensus 159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~--------------------------- 211 (567)
.+. ...+++|++|++++|+++.+| +..+++|+.|++++|.++.+|...+.
T Consensus 205 ~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 205 KLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred eec-cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 442 111445555555555555544 44455555555555555444322111
Q ss_pred -ccCCCccEEECCCCCCCC-Cch--------hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423 212 -RELGKLHTLQLSFNRLTS-LPS--------LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278 (567)
Q Consensus 212 -~~l~~L~~L~Ls~N~l~~-lp~--------~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip 278 (567)
..+++|+.|+|++|...+ +|. .+..+++|++|++++|+|++++ +..+++|+.|++++|+|+.+|
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCT
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCcc
Confidence 114677777777775332 221 2567789999999999999985 578999999999999999876
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=254.21 Aligned_cols=265 Identities=23% Similarity=0.252 Sum_probs=182.2
Q ss_pred CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCC-CCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCC
Q psy12423 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNR-ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERRE 77 (567)
Q Consensus 1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~ 77 (567)
|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+++..+.+++.|+.+ +...+.+.. .+..
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L-------------~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL-------------DLGSSKIYFLHPDA 92 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE-------------ECTTCCCCEECTTS
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE-------------ECCCCcCcccCHhH
Confidence 57889999988876 5678888888888888884 445766666777777765 222222222 2455
Q ss_pred CCCCCCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceecC----C-
Q psy12423 78 PEVKGELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVLN----G- 144 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~~----~- 144 (567)
+..+++|++|+|++|.+++.. .+.++++|++|++++|.++.+. ++.+++|++|++++|.+...... +
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 667777777777777777522 2677777777777777776642 56677777777777766543210 0
Q ss_pred -CC------------------------------CcEEEcCCCccccccCCC-----------------------------
Q psy12423 145 -SS------------------------------LISVIAGNNKLQSLIVSP----------------------------- 164 (567)
Q Consensus 145 -~~------------------------------L~~L~l~~n~l~~~~~~~----------------------------- 164 (567)
++ |+.|++++|.++...+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 22 666666666443221110
Q ss_pred -------C----CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423 165 -------R----PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P 231 (567)
Q Consensus 165 -------~----~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p 231 (567)
+ +++|+.|++++|.+..+ |..+..+++|+.|+|++|.++.++...|.. +++|++|+|++|.++.+ |
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCS
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCH
Confidence 0 24677777777777755 456777788888888888888776666655 77888888888888775 5
Q ss_pred hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
..+..+++|++|++++|.|+.+++..|..+++|+.|+|++|.++.+|.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 567778888888888888888877777778888888888888877664
No 49
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=99.93 E-value=7.3e-26 Score=230.48 Aligned_cols=173 Identities=21% Similarity=0.296 Sum_probs=146.6
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------------hhhhhHHHHHHHHHHHHHHhhhc----------
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------------KETASDYMKYTMLTAHREIKDSL---------- 356 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------------~~~~~~~l~~a~l~~n~~i~~~~---------- 356 (567)
..+|+++||+++...+.+....++..+.+.... ...+.+++..+|..+++.+....
T Consensus 62 ~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~ 141 (337)
T 3qn1_B 62 GHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDK 141 (337)
T ss_dssp EEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSC
T ss_pred eEEEEEEeCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhhhccccccccc
Confidence 568999999999999999888888777664221 23457899999999999887654
Q ss_pred -----ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------------
Q psy12423 357 -----HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT-------------------------- 405 (567)
Q Consensus 357 -----~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~-------------------------- 405 (567)
....+++|++.+.+.+. ++++||+||||+|++|+|+.++||+||+
T Consensus 142 ~~~~~~~~~~GtT~~~~~i~~~----~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~v~~~~~~r~~ 217 (337)
T 3qn1_B 142 VLEAVASETVGSTAVVALVCSS----HIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVF 217 (337)
T ss_dssp BCCCSSCTTCEECEEEEEECSS----EEEEEEESSCEEEEEETTEEEESCCCCCTTSHHHHHHHHHTTCCEEESSSEEET
T ss_pred cccccccCCCCceEEEEEEECC----EEEEEeccCcEEEEEeCCEeeeecCCCCCCCHHHHHHHHHcCCeEEecCCceec
Confidence 12346677776776666 8999999999999999999999999997
Q ss_pred ----CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-------------C----------------------
Q psy12423 406 ----LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS-------------E---------------------- 446 (567)
Q Consensus 406 ----~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~-------------~---------------------- 446 (567)
++|++|+..++++++++|++..+.+.+.|+|||||||||| .
T Consensus 218 g~l~~sRalGd~~~~~~v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (337)
T 3qn1_B 218 GVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGID 297 (337)
T ss_dssp TTBSCSBCEECGGGTTTSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHHHHHHHHCCC----CCSSCC
T ss_pred CccccccccccccccCCCCCcceEEEEEeCCCCCEEEEEecCcccCCCHHHHHHHHHHHhhhhccccccccccccccccC
Confidence 5789999888899999999999999888999999999999 1
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 447 --PVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 447 --~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
++.+|+.|++.|+.+|+.||||||||++...
T Consensus 298 ~~~~~~a~~Lv~~A~~~g~~DNiTvivv~l~~~ 330 (337)
T 3qn1_B 298 PACQAAADYLSMLALQKGSKDNISIIVIDLKAQ 330 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCEEEEEEECCSC
T ss_pred hhHHHHHHHHHHHHHHcCCCCCEEEEEEEecCC
Confidence 2468999999999999999999999999843
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=8.8e-25 Score=241.70 Aligned_cols=290 Identities=20% Similarity=0.179 Sum_probs=209.7
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.|+.+|+ +|.++++|++|+|++|+|+.+|+..|.+++.|+.+ ++..+...+++ ...+.
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L----------~Ls~N~l~~l~--~~~~~ 145 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL----------VAVETNLASLE--NFPIG 145 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE----------ECTTSCCCCST--TCCCT
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE----------ECCCCcCCCCC--hhhhh
Confidence 7899999999999965 69999999999999999999999998888888876 22222233322 23466
Q ss_pred CCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCCCcc---------------------------------
Q psy12423 80 VKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA--------------------------------- 123 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~--------------------------------- 123 (567)
.+++|++|+|++|.++... .+..+++|++|++++|+++.+....
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 7788888888888876532 4667778888888877654321000
Q ss_pred --------------------------------------------------------------------------------
Q psy12423 124 -------------------------------------------------------------------------------- 123 (567)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (567)
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence
Q ss_pred ---------------------cccCcEEEcccCccccee-----------------------cCCCCCcEEEcCCCcccc
Q psy12423 124 ---------------------LNRLESIKCSRNQLKTLV-----------------------LNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 124 ---------------------l~~L~~L~ls~n~l~~l~-----------------------~~~~~L~~L~l~~n~l~~ 159 (567)
...|+.|++.+|.+..+. ..+++|+.|+++.|.+..
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 001223333333222110 123455566655554422
Q ss_pred c-------------------------------------------------cCC-CC--CCcccEEecccCCCCCc-cccc
Q psy12423 160 L-------------------------------------------------IVS-PR--PARLQHLDISYNELESL-PDWI 186 (567)
Q Consensus 160 ~-------------------------------------------------~~~-~~--~~~L~~L~Ls~n~l~~l-p~~l 186 (567)
. ... .+ +.+++.++++.|.+..+ +..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 1 111 11 55677788888888754 5678
Q ss_pred CCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCC
Q psy12423 187 DTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264 (567)
Q Consensus 187 ~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L 264 (567)
..++.|+.|++++|.+. .+++..+.. +++|++|+|++|+|+++ |..+.++++|++|+|++|+|+.+++..|.++++|
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 88999999999999754 444455554 89999999999999986 5678999999999999999999999989999999
Q ss_pred cEEEccCCcCCCCCCCCc-CC-ccceeecccCCccccCCcc
Q psy12423 265 KVLNISKNCLKMLPSLQK-GF-YLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 265 ~~L~Ls~N~l~~ip~~~~-~~-~~L~~~~l~~~~~~~~~~~ 303 (567)
+.|+|++|+|+.+|+... .+ .+|..+++..|+|.|.|.+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999998876544 55 5789999999999777554
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-26 Score=235.10 Aligned_cols=248 Identities=22% Similarity=0.260 Sum_probs=191.2
Q ss_pred EEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423 4 FRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG 82 (567)
Q Consensus 4 L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 82 (567)
++++.+.+..++ ..+..+++|++|+|++|.|+.+++..+. .++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~------------------------------------~l~ 58 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA------------------------------------PFT 58 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT------------------------------------TCT
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh------------------------------------CCC
Confidence 445555555443 3356677899999999999988765532 345
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee-cCCCCCcEEEcCCCcccccc
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQSLI 161 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~~n~l~~~~ 161 (567)
+|++|+|++|.+++...+..+++|++|++++|.++.++ ..++|++|++++|.+..++ ..+++|+.|++++|.++.+.
T Consensus 59 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE--ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc--CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence 78889999999887667888899999999999887754 3478999999999988776 34678888889888888887
Q ss_pred CCCC--CCcccEEecccCCCCCcc-ccc-CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423 162 VSPR--PARLQHLDISYNELESLP-DWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237 (567)
Q Consensus 162 ~~~~--~~~L~~L~Ls~n~l~~lp-~~l-~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 237 (567)
+..+ +++|++|++++|.++.++ ..+ ..+++|++|+|++|.++.++...+ +++|++|+|++|.++.+|..+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhhccc
Confidence 7666 788889999998888653 444 467888999999998887765543 778899999999888888778888
Q ss_pred CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeeccc
Q psy12423 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLR 293 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l~ 293 (567)
++|++|+|++|.|+.+|.. +..+++|+.|++++|+++ .+|..+..+..|....+.
T Consensus 214 ~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 8899999999988888775 467888899999999887 555555555555544443
No 52
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=99.93 E-value=1.6e-25 Score=226.29 Aligned_cols=172 Identities=26% Similarity=0.369 Sum_probs=143.1
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-----------hhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEe
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-----------KETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLS 369 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-----------~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~ 369 (567)
..+|.++||+++...+.+....++..+.+.... .+...+++..+|..+++.+..... ..+++|++.+.
T Consensus 52 ~~~~~V~DG~GG~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~GtT~~~~~ 130 (316)
T 3kdj_B 52 AHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAP-ETVGSTSVVAV 130 (316)
T ss_dssp CEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHCCCGGGTHHHHHHHHHHHHHHHHHHHHHGGGTSC-TTCEECEEEEE
T ss_pred eEEEEEEeCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcEEEEE
Confidence 678999999999999988888888776554221 123578888999999988755432 34556666666
Q ss_pred ecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------------CCCCCCCCCCCCCc
Q psy12423 370 LHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------------LSPPVPPQGSCPLS 419 (567)
Q Consensus 370 ~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------------~~r~~g~~~~~~~~ 419 (567)
+.+. ++++||+||||+|++|+|+.++||+||+ ++|++|+..+++++
T Consensus 131 i~~~----~l~vanvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~~g~v~~~~~~r~~g~l~~sRalGd~~~~~~~ 206 (316)
T 3kdj_B 131 VFPS----HIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPSI 206 (316)
T ss_dssp ECSS----EEEEEEESSCEEEEEETTEEEESCCCCCTTSHHHHHHHHHTTCCEEESSSEEETTTBSCSBCEECGGGTTTS
T ss_pred EECC----EEEEEEccCCEEEEEECCEecccCCCCCCCCHHHHHHHHHcCCeEEecCCceEcceeccccccCccccCCCc
Confidence 6665 8999999999999999999999999998 37999998888999
Q ss_pred cCCCceEEEEecCCCeEEEEEcCCCC-------------C------------------------------HHHHHHHHHH
Q psy12423 420 FPDPHVTEVMLHENDHFLILANKSVS-------------E------------------------------PVLAAKRIQD 456 (567)
Q Consensus 420 ~~~p~v~~~~l~~~d~~lil~sDGl~-------------~------------------------------~~~~a~~l~~ 456 (567)
.++|++..+.+...|+|||||||||| . ++.+|++|++
T Consensus 207 ~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~Lv~ 286 (316)
T 3kdj_B 207 IPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLSK 286 (316)
T ss_dssp BCCCEEEEEECCTTEEEEEEECHHHHTSSCHHHHHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCCCEEEEEccCcccCCCHHHHHHHHHHHhhhhccccccccccccccccccccccCchHHHHHHHHHH
Confidence 99999999997778899999999999 1 3468899999
Q ss_pred HHHHcCCCCCcEEEEEEeCCC
Q psy12423 457 LAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 457 ~a~~~g~~dnit~~vv~~~~~ 477 (567)
.|+.+|+.||||||||++...
T Consensus 287 ~A~~~g~~DNiTvivv~l~~~ 307 (316)
T 3kdj_B 287 LAIQRGSKDNISVVVVDLKPR 307 (316)
T ss_dssp HHHHTTCCSCEEEEEEECSCC
T ss_pred HHHHcCCCCCeEEEEEEccCC
Confidence 999999999999999999843
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.8e-24 Score=235.75 Aligned_cols=236 Identities=30% Similarity=0.335 Sum_probs=200.5
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV 80 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (567)
|++|+|++|.|+.||. .+++|++|+|++|+|+.+|. .++.|+.+ ++..+....++ ..
T Consensus 63 L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L----------~Ls~N~l~~l~------~~ 119 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLEL----------SIFSNPLTHLP------AL 119 (622)
T ss_dssp CSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEE----------EECSCCCCCCC------CC
T ss_pred CcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEE----------ECcCCcCCCCC------CC
Confidence 6899999999999997 57899999999999999997 34444443 11223333322 25
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL 160 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~ 160 (567)
+++|+.|++++|+++.... .+++|++|++++|.++.++. .+++|+.|++++|.++.++..+++|+.|++++|.++.+
T Consensus 120 l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC
Confidence 6899999999999988653 35899999999999998753 56889999999999999997889999999999999987
Q ss_pred cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423 161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240 (567)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 240 (567)
+.. +++|+.|++++|.++.+|.. +++|+.|+|++|.|+.+|. . +++|+.|+|++|.|+.+|. .+++|
T Consensus 197 ~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp~----~-l~~L~~L~Ls~N~L~~lp~---~~~~L 263 (622)
T 3g06_A 197 PTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV----L-PSELKELMVSGNRLTSLPM---LPSGL 263 (622)
T ss_dssp CCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCC----C-CTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred CCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCCC----C-CCcCcEEECCCCCCCcCCc---ccccC
Confidence 643 58999999999999999864 4889999999999999982 2 7899999999999999988 67899
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
+.|+|++|.|+.+|.. +.++++|+.|+|++|+++.
T Consensus 264 ~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 264 LSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred cEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence 9999999999999876 5799999999999999983
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.2e-24 Score=226.28 Aligned_cols=276 Identities=26% Similarity=0.259 Sum_probs=155.3
Q ss_pred CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccch-----hhccccccccCCccccc
Q psy12423 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE-----EREEDFEQDEDGIIVER 75 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~-----~~~~~~~~~~~~l~~~~ 75 (567)
|++|++++|.++.+|.. .++|++|++++|.++++|... ..++.|... .+.+.. ..+...+...+.+...+
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~-~n~l~~l~~~~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP-QSLKSLLVD-NNNLKALSDLPPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC-TTCCEEECC-SSCCSCCCSCCTTCCEEECCSSCCSSCC
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcCCcccccc-CCCcEEECC-CCccCcccCCCCCCCEEECcCCCCCCCc
Confidence 46788888888877762 357888888888887777532 333333321 111100 00111111111111122
Q ss_pred CCCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCC
Q psy12423 76 REPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN 154 (567)
Q Consensus 76 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~ 154 (567)
.+..+++|++|++++|++++... ...+|++|++++|.++.++ ++.+++|++|++++|.+++++....+|+.|++++
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred -ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 24555666666666666554332 1235666666666665552 5556666666666666666554455666677766
Q ss_pred CccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh
Q psy12423 155 NKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234 (567)
Q Consensus 155 n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 234 (567)
|.++.++....+++|++|++++|.++.+|.. +++|+.|++++|.++.+|.. +++|++|++++|.++++|...
T Consensus 225 n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l~~~~ 296 (454)
T 1jl5_A 225 NILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLSELP 296 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEESCCC
T ss_pred CcCCcccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCcccCcC
Confidence 6666555322266677777777766666542 35677777777777666542 356666666666666533211
Q ss_pred ----------------hCC-CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc
Q psy12423 235 ----------------RQI-ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF 297 (567)
Q Consensus 235 ----------------~~l-~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~ 297 (567)
..+ ++|++|++++|+++++|.. +++|+.|++++|+++.+|. .+.+|+.+++..|.+
T Consensus 297 ~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc---hhhhccEEECCCCCC
Confidence 011 3566666666666666542 4667777777777777776 244555555555555
Q ss_pred cc
Q psy12423 298 CN 299 (567)
Q Consensus 298 ~~ 299 (567)
.+
T Consensus 370 ~~ 371 (454)
T 1jl5_A 370 RE 371 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 55
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=99.93 E-value=4.3e-25 Score=227.72 Aligned_cols=171 Identities=18% Similarity=0.297 Sum_probs=142.7
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------hhhhhHHHHHHHHHHHHHHhhhc----ccccCceeEEEE
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------KETASDYMKYTMLTAHREIKDSL----HRYSLSATLCHL 368 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------~~~~~~~l~~a~l~~n~~i~~~~----~~~~~st~~~~~ 368 (567)
..+|.++|||++...+.+....++..+.....+ ...+.+++..+|..+++.+.... ....+++|++.+
T Consensus 53 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~ 132 (382)
T 1a6q_A 53 WSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132 (382)
T ss_dssp EEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEE
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceEEEE
Confidence 468999999999999999888888877643222 23347889999999999886543 123456666666
Q ss_pred eecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC-----
Q psy12423 369 SLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC----- 416 (567)
Q Consensus 369 ~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~----- 416 (567)
.+.+. ++++||+||||+|++|+|+..+||+||+ ++|++|+..++
T Consensus 133 li~~~----~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~RI~~~gg~v~~~Rv~g~l~ltRalGd~~~K~~~~~ 208 (382)
T 1a6q_A 133 LISPQ----HTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGK 208 (382)
T ss_dssp EECSS----EEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTEETTTBSCSBCEECGGGSCCTTC
T ss_pred EEECC----eEEEEEcCCCeEEEEECCceEEeCCCCCCCCHHHHHHHHhcCcEEecccccCceeeeeecCcHhhcccccC
Confidence 66666 8999999999999999999999999997 46788886542
Q ss_pred ----CCccCCCceEEEEec-CCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEE
Q psy12423 417 ----PLSFPDPHVTEVMLH-ENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLV 471 (567)
Q Consensus 417 ----~~~~~~p~v~~~~l~-~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~v 471 (567)
++|+++|++..+.+. ++|+|||||||||| +++.+|+.|++.|+.+|+.|||||||
T Consensus 209 ~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTviv 288 (382)
T 1a6q_A 209 GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVIL 288 (382)
T ss_dssp CGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred CCccCeeeeeeeEEEEEccCCCCeEEEEeccCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCcCCEEEEE
Confidence 567899999999999 88899999999999 57789999999999999999999999
Q ss_pred EEeC
Q psy12423 472 LRFQ 475 (567)
Q Consensus 472 v~~~ 475 (567)
|++.
T Consensus 289 v~~~ 292 (382)
T 1a6q_A 289 ICFP 292 (382)
T ss_dssp EECT
T ss_pred EEec
Confidence 9998
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1e-25 Score=227.88 Aligned_cols=212 Identities=20% Similarity=0.182 Sum_probs=144.6
Q ss_pred CCccEEEecC-CCCCCcc--ccCCCCCccEEEccCCCCCC-CC--CcccccCcEEEcccCccccee----cCCCCCcEEE
Q psy12423 82 GELTSVNLRS-NQLKGTI--ILGNYGNLTTLDVSENSIES-LD--LGALNRLESIKCSRNQLKTLV----LNGSSLISVI 151 (567)
Q Consensus 82 ~~L~~L~Ls~-n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~--~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~ 151 (567)
++|++|+|++ |.+.+.. .+..+++|++|++++|.++. ++ +..+++|++|++++|.+.... ..+++|+.|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 3555555553 5554322 35555555666665555552 22 455555666666666555221 2345666666
Q ss_pred cCCCccccccCCCC--CC-cccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423 152 AGNNKLQSLIVSPR--PA-RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 152 l~~n~l~~~~~~~~--~~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
+++|.+++..+..+ ++ +|++|++++|.++ .+|..+..+. |+.|++++|.++..++..+.. +++|+.|+|++|.+
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCce
Confidence 66666664444333 44 7888888888888 6677777776 888999888888666666654 88889999998888
Q ss_pred CCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCc
Q psy12423 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPG 296 (567)
Q Consensus 228 ~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~ 296 (567)
+..+..+..+++|++|+|++|.|++..+..+..+++|+.|+|++|+++ .+|.. ..+++|..+++..|.
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 876666778888999999999888444445678888999999999888 67765 677778777777765
No 57
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-25 Score=223.88 Aligned_cols=171 Identities=16% Similarity=0.273 Sum_probs=135.5
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHhhhc------------------ccccC
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVK-ETASDYMKYTMLTAHREIKDSL------------------HRYSL 361 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~-~~~~~~l~~a~l~~n~~i~~~~------------------~~~~~ 361 (567)
..++.++|||++...+.+....++..+.+..... ..+.+++..+|..+++.+.... ....+
T Consensus 51 ~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (304)
T 2i0o_A 51 CSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDS 130 (304)
T ss_dssp EEEEEEEECSSCSHHHHHHHHHHHHHHHHSHHHHTTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSC
T ss_pred eEEEEEEcCCCCHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccccccccCCCCC
Confidence 5689999999999999999999988887654332 3457899999999998765421 13345
Q ss_pred ceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------------------------CCCCCCCC
Q psy12423 362 SATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT----------------------------LSPPVPPQ 413 (567)
Q Consensus 362 st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----------------------------~~r~~g~~ 413 (567)
++|++.+.+.+. .+++||+||||+|++|+|+.++||+||+ ++|++|+.
T Consensus 131 GtT~~~~~i~~~----~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~e~~rI~~~gg~v~~~~rv~g~l~ltRalGd~ 206 (304)
T 2i0o_A 131 GCTAVVALLHGK----DLYVANAGDSRCVVCRNGKALEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDH 206 (304)
T ss_dssp EEEEEEEEEETT----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHTTCCBCTTSCBTTSCSCSBCEECG
T ss_pred CccEEEEEEECC----EEEEEEccCcEEEEEECCEEEEcCCCcCCcCHHHHHHHHhCCCEEEeCCeEcCceeccccccCH
Confidence 666666666665 8999999999999999999999999997 46778876
Q ss_pred CCC---------CCccCCCceEEEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHH---
Q psy12423 414 GSC---------PLSFPDPHVTEVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQS--- 460 (567)
Q Consensus 414 ~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~--- 460 (567)
.++ ++|+++||+..+++.++|.|||||||||| +++++|++|++.|++
T Consensus 207 ~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~~~ 286 (304)
T 2i0o_A 207 GYKMNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHT 286 (304)
T ss_dssp GGCCCTTSCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC----
T ss_pred HHccCccCCccCCeEEeeCeEEEEEcCCCCeEEEEECcCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Confidence 542 46789999999999999999999999999 367789999999987
Q ss_pred ---cCCCCCcEEEEEEeC
Q psy12423 461 ---YGSEDNLSVLVLRFQ 475 (567)
Q Consensus 461 ---~g~~dnit~~vv~~~ 475 (567)
.|+.||||||||+|+
T Consensus 287 ~g~~g~~DNiTvivv~~~ 304 (304)
T 2i0o_A 287 RGDGTGCDNMTAIIVQFK 304 (304)
T ss_dssp --------CEEEEEEEEC
T ss_pred ccCCCCCCCeEEEEEEeC
Confidence 468999999999974
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=228.29 Aligned_cols=233 Identities=18% Similarity=0.276 Sum_probs=200.4
Q ss_pred EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423 3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG 82 (567)
Q Consensus 3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 82 (567)
.++.+++.++.+|..+. ++++.|+|++|.|+.++... +..++
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~------------------------------------~~~l~ 88 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNS------------------------------------FKHLR 88 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTT------------------------------------TSSCS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHH------------------------------------hhCCC
Confidence 56667777777776554 57778888777777665433 24566
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG 153 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~ 153 (567)
+|++|+|++|.++... .|.++++|++|+|++|+++.++ +..+++|++|++++|.+..++. .+++|+.|+++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 8999999999998765 6889999999999999999874 6788999999999999998763 57899999999
Q ss_pred C-CccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423 154 N-NKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230 (567)
Q Consensus 154 ~-n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l 230 (567)
+ +.+..++...+ +++|++|+|++|.++.+|. +..+++|+.|+|++|.++.++...|.. +++|+.|+|++|.|+.+
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEE
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEE
Confidence 8 56666666555 8999999999999999985 889999999999999999987777776 99999999999999986
Q ss_pred c-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 231 P-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 231 p-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+ ..+..+++|+.|+|++|+|+.++...|..+++|+.|+|++|++.
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 4 57889999999999999999999999999999999999999886
No 59
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=99.92 E-value=6.5e-25 Score=217.34 Aligned_cols=172 Identities=20% Similarity=0.345 Sum_probs=138.7
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc------cccCceeEEEEeec-Cc
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH------RYSLSATLCHLSLH-PV 373 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~------~~~~st~~~~~~~~-~~ 373 (567)
..++.++||+++...+.+....++..+.+.......+.+++..+|..+++.+..... ...+++|++.+.+. ..
T Consensus 35 ~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~~~GtT~~~~~i~~~~ 114 (274)
T 2iq1_A 35 VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI 114 (274)
T ss_dssp EEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHC---CCGGGCEECEEEEEEETTT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcEEEEEEECCC
Confidence 468999999999988888888887776654333445688999999999998865431 23455555554443 33
Q ss_pred cceEEEEEEEecCceEEEEeCCeeeeCCCCCCC--------------------------------CCCCCCCCCCC-Ccc
Q psy12423 374 THRYMLHIASVGEAKAILCRQAGSLTFTHAPTL--------------------------------SPPVPPQGSCP-LSF 420 (567)
Q Consensus 374 ~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~--------------------------------~r~~g~~~~~~-~~~ 420 (567)
.+++||+||||+|++|+|+..+||+||+. +|++|+..+++ ++.
T Consensus 115 ----~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~E~~Ri~~~gG~v~~~~~~~~~~~~~~~ltralGd~~~k~~~v~ 190 (274)
T 2iq1_A 115 ----ELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI 190 (274)
T ss_dssp ----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHTTCCEEECTTSCEEETTTBSCSBCEECGGGTTTTCB
T ss_pred ----EEEEEEecCceEEEEeCCEeeECCCCCCCcCHHHHHHHHHcCCEEEcCCCCceeECCeEeeccccCChhhccCCEE
Confidence 78999999999999999999999999983 45566655443 478
Q ss_pred CCCceEEEEecCC-CeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423 421 PDPHVTEVMLHEN-DHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476 (567)
Q Consensus 421 ~~p~v~~~~l~~~-d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~ 476 (567)
++|++..+++.++ |+|||||||||| +|+++|+.|++.|+.+|+.|||||+||++..
T Consensus 191 ~~pdi~~~~l~~g~d~~lll~SDGl~d~l~~~ei~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~ 263 (274)
T 2iq1_A 191 AEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA 263 (274)
T ss_dssp CCCEEEEEECCTTTEEEEEEECHHHHTTCCHHHHHHHHHTSSSHHHHHHHHHHHHHHTTCCSCEEEEEEECTT
T ss_pred eCCEEEEEEeCCCCCcEEEEEccCcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEccC
Confidence 9999999999984 679999999999 6889999999999999999999999999983
No 60
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=99.92 E-value=6.8e-25 Score=225.64 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=139.1
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeec---------
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLH--------- 371 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~--------- 371 (567)
..+|+++|||++..++.++...++..+.+.. ..+.+++..+|..+++.+.......+.+++++.+...
T Consensus 48 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~---~~~~~al~~af~~~d~~l~~~~~~~GtTa~~~~i~~~~~~~~~~~~ 124 (377)
T 3d8k_A 48 TRVHAMFDGFQGRHSAMWLAQNVMNYLNDLR---DVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVV 124 (377)
T ss_dssp EEEEEEEEBSSSSHHHHHHHHHHHHHHTTCS---SSSHHHHHHHHHHHHHHHHHHTCCCCBCEEEEEEEEESSCCCEEEE
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEeccccccccccc
Confidence 4689999999999999999999998886532 3457899999999999988765443333333322110
Q ss_pred -----Cc-------------------------------cceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------
Q psy12423 372 -----PV-------------------------------THRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------- 405 (567)
Q Consensus 372 -----~~-------------------------------~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------- 405 (567)
|. ....++++||+||||||++|+|+.++||+||+
T Consensus 125 g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI 204 (377)
T 3d8k_A 125 GRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRV 204 (377)
T ss_dssp TTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTCEEEEEEEEESSCEEEEEETTEEEESSCCCSSSSHHHHHHH
T ss_pred cccccccccccccccccccccccccceeeecccccccccCCCeEEEEEcccceEEEEECCEEEECCcCCCCCCHHHHHHH
Confidence 00 00238999999999999999999999999997
Q ss_pred ---------------------CCCCCCCCCCC---------CCccCCCceEEEEecCCCeEEEEEcCCCC----------
Q psy12423 406 ---------------------LSPPVPPQGSC---------PLSFPDPHVTEVMLHENDHFLILANKSVS---------- 445 (567)
Q Consensus 406 ---------------------~~r~~g~~~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~---------- 445 (567)
++|++|+..++ ++++++|||..++++++| ||||||||||
T Consensus 205 ~~~gg~v~~~~g~~rv~G~l~vtRalGd~~~k~~~~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~ls~~e~v~ 283 (377)
T 3d8k_A 205 QAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAAIA 283 (377)
T ss_dssp HTTTCCEEECSSSEEETTTBSCSBCSSCGGGSCC---CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCSCSSHHHHH
T ss_pred HHcCCEEEecCCcEEEcCceecceeecChhhhcccccccccCccccCCcEEEEEcCCCC-EEEEEECCcccCCCcHHHHH
Confidence 47888887653 578999999999999875 6889999999
Q ss_pred -----------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423 446 -----------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476 (567)
Q Consensus 446 -----------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~ 476 (567)
+++.+|++|++.|+.+|+.||||||||++..
T Consensus 284 ~v~~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~ 325 (377)
T 3d8k_A 284 AAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPE 325 (377)
T ss_dssp HHHTTSCCCGGGHHHHHHHHHHTTTTSSCCSCCCEEEEECCS
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 3567899999999999999999999999973
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=4.5e-24 Score=227.03 Aligned_cols=233 Identities=19% Similarity=0.262 Sum_probs=200.7
Q ss_pred EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423 3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG 82 (567)
Q Consensus 3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 82 (567)
.++.+++.++.+|..+. ++|++|+|++|.|+.+++..+ ..++
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~------------------------------------~~l~ 99 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTF------------------------------------RHLH 99 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT------------------------------------TTCT
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHc------------------------------------CCCC
Confidence 56667777777776554 578888888887776654332 4566
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG 153 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~ 153 (567)
+|++|+|++|.+++.. .+.++++|++|+|++|.++.++ +..+++|++|++++|.+..++. .+++|+.|+++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 8999999999999765 6889999999999999999875 6778999999999999998763 57899999999
Q ss_pred C-CccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423 154 N-NKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230 (567)
Q Consensus 154 ~-n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l 230 (567)
+ +.+..++...+ +++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+++..+.. +++|+.|+|++|.++.+
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEE
T ss_pred CCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceE
Confidence 8 56777766555 8899999999999999975 888999999999999999988877776 99999999999999985
Q ss_pred -chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 231 -PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 231 -p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+..+..+++|+.|+|++|+|+.+|...|..+++|+.|+|++|++.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 557899999999999999999999999999999999999999886
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-25 Score=240.15 Aligned_cols=238 Identities=22% Similarity=0.261 Sum_probs=200.5
Q ss_pred cCCccCCC----CCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423 13 EFPGNQDS----FPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN 88 (567)
Q Consensus 13 ~lp~~~~~----l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 88 (567)
.+|..+.. +++|++|+|++|.|+.+++..+ ..+++|++|+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~------------------------------------~~l~~L~~L~ 64 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADL------------------------------------APFTKLELLN 64 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGG------------------------------------TTCTTCCEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHH------------------------------------hCCCCCCEEE
Confidence 45554444 3489999999999998876543 2355899999
Q ss_pred ecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-CCCCCcEEEcCCCccccccCCCC--
Q psy12423 89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-NGSSLISVIAGNNKLQSLIVSPR-- 165 (567)
Q Consensus 89 Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-~~~~L~~L~l~~n~l~~~~~~~~-- 165 (567)
|++|.+++..++..+++|++|+|++|.++.++. .++|++|++++|.+..++. .+++|+.|++++|.+++..+..+
T Consensus 65 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 142 (487)
T 3oja_A 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV--GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142 (487)
T ss_dssp CTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG
T ss_pred eeCCCCCCCcccccCCCCCEEEecCCcCCCCCC--CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC
Confidence 999999887789999999999999999887653 3899999999999998774 46899999999999999887766
Q ss_pred CCcccEEecccCCCCCc-ccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESL-PDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~l-p~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 243 (567)
+++|+.|+|++|.++.+ |..+. .+++|+.|+|++|.|+.++...+ +++|+.|+|++|.|+++|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 88999999999999964 55665 78999999999999998866543 889999999999999998889999999999
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeecc
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQL 292 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l 292 (567)
+|++|.|+.+|.. +..+++|+.|++++|++. .+|..+..+..+....+
T Consensus 220 ~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 220 SLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred EecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 9999999999886 578999999999999998 67766666666555444
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=6.1e-24 Score=211.68 Aligned_cols=215 Identities=28% Similarity=0.335 Sum_probs=156.9
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
++++.+++.++.+|..+ .++|++|+|++|.|+.+++..+ ..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~------------------------------------~~~ 55 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASF------------------------------------RAC 55 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTT------------------------------------TTC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHc------------------------------------ccC
Confidence 35677777777777544 3577777777777776654332 234
Q ss_pred CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCC-CCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423 82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENS-IESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN 155 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n 155 (567)
++|++|+|++|.+++.. .+..+++|++|++++|. ++.++ +..+++|++|+++ +|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~--------------------~n 115 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD--------------------RC 115 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT--------------------TS
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC--------------------CC
Confidence 46777777777776543 56667777777777775 65552 3444455554444 44
Q ss_pred ccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423 156 KLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P 231 (567)
Q Consensus 156 ~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p 231 (567)
.++.+.+..+ +++|++|++++|.++.++. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|.++.+ |
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECT
T ss_pred cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcccccCH
Confidence 4444444333 6788888888888887764 5788889999999999998888776665 88899999999988875 6
Q ss_pred hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
..+..+++|+.|++++|.|+.+++..+..+++|+.|++++|++.
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 67888889999999999999988887888999999999999876
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.9e-24 Score=217.64 Aligned_cols=230 Identities=22% Similarity=0.266 Sum_probs=175.2
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC-----CCcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL-----DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN 155 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n 155 (567)
+|++|+|++|+++... .+..+++|++|++++|.++.+ .+..+++|++|++++|.+..++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~-------------- 94 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-------------- 94 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--------------
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh--------------
Confidence 6777777777777655 366777777777777777643 1334556666666666554432
Q ss_pred ccccccCCCC-CCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--C
Q psy12423 156 KLQSLIVSPR-PARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--L 230 (567)
Q Consensus 156 ~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--l 230 (567)
.... +++|++|++++|.++.++. .+..+++|++|++++|.+..++...+.. +++|++|+|++|.+++ +
T Consensus 95 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 95 ------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp ------EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGGEE
T ss_pred ------hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccccc
Confidence 2211 6789999999999998864 7899999999999999999877776665 8999999999999986 7
Q ss_pred chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccC--Ccc----
Q psy12423 231 PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DAL---- 303 (567)
Q Consensus 231 p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~---- 303 (567)
|..+..+++|++|+|++|.++.+++..+..+++|+.|+|++|+++.+|.. +..+.+|..+++..|.+.+. ..+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 88899999999999999999999888889999999999999999998874 45678888888888877654 122
Q ss_pred --eeeccCCCCchhhhHHhhhhHHHHHhhhhh
Q psy12423 304 --IGIFDSGDNGDIASTLVQSIPRILLEERTV 333 (567)
Q Consensus 304 --~~~~dg~~~~~is~~l~~~lP~~l~~~~~l 333 (567)
...++-.++...+.+-..+++.|+.+....
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp TTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred ccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence 223444666666666666777777665543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.5e-26 Score=229.72 Aligned_cols=228 Identities=17% Similarity=0.234 Sum_probs=197.5
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.++.++ ..|..+++|++|+|++|.++++++ + .
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-------------------------------------~ 77 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-------------------------------------E 77 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-------------------------------------T
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-------------------------------------h
Confidence 689999999999886 579999999999999999986553 1 2
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec----CCCCCcEEEcCCC
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL----NGSSLISVIAGNN 155 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~~n 155 (567)
.+++|++|++++|.+++.. ..++|++|++++|.++.++...+++|++|++++|+++.+.. .+++|+.|++++|
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred hcCCCCEEECcCCcccccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 3568999999999887644 34899999999999999887788999999999999988753 4688999999999
Q ss_pred ccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423 156 KLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 156 ~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 232 (567)
.++...+..+ +++|++|+|++|.++.++.. ..+++|++|+|++|.++.+|..+.. +++|+.|+|++|.|+.+|.
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcc--cCcccEEECcCCcccchhh
Confidence 9998876654 68999999999999988653 3589999999999999999888543 8999999999999999999
Q ss_pred hhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEccCC
Q psy12423 233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN 272 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N 272 (567)
.+..+++|+.|++++|.+. ...+.++..+++|+.|++++|
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999999999999999999 556667789999999999954
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.4e-24 Score=218.07 Aligned_cols=204 Identities=22% Similarity=0.235 Sum_probs=126.5
Q ss_pred CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccc
Q psy12423 82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~ 158 (567)
++|++|+|++|.++..+ .++.+++|++|++++|.++.++ +..+++|++|++++|++....+. .+....+...
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~--~~~~~~~~~~--- 178 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE--PLASTDASGE--- 178 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCS--CSEEEC-CCC---
T ss_pred CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccCh--hHhhccchhh---
Confidence 35666666666666433 4556666666666666666553 55566666666666543322111 0111100000
Q ss_pred cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCC
Q psy12423 159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQI 237 (567)
Q Consensus 159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l 237 (567)
...+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..+.. +++|++|+|++|.+.+ +|..+..+
T Consensus 179 ----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 179 ----HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp ----EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred ----hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCC
Confidence 0015677777777777777777777777777777777777777765443 7777777777776654 66677777
Q ss_pred CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCc
Q psy12423 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPG 296 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~ 296 (567)
++|++|+|++|.+....+..+.++++|+.|+|++|++. .+|..+..++.+....+..+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 77777777777655333333567777777777776654 777777777777666665443
No 67
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=99.91 E-value=2.4e-24 Score=220.86 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=135.9
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc-cccCceeEEEEeecC----c--
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH-RYSLSATLCHLSLHP----V-- 373 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~-~~~~st~~~~~~~~~----~-- 373 (567)
..+|++||||++..++.++...++..+.+.. ..+.+.+..+|..+++.+..... ...++++++.+.+.. .
T Consensus 43 ~~lf~VfDGHGG~~as~~a~~~l~~~l~~~~---~~~~~~l~~a~~~~d~~i~~~~~~~~~~GtT~v~~~i~~~~~p~~~ 119 (364)
T 2isn_A 43 VRIKAVFDGHAGEATSQYCAKHAAKHLGKLS---EFTFAEVKKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVE 119 (364)
T ss_dssp EEEEEEEEEESCSHHHHHHHHHHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHCSSSCCEECEEEEEEEECSSCEEE
T ss_pred eEEEEEEECCCCHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcccCCCCCcceehhhhhcccccccc
Confidence 5689999999999999999999998876532 23467899999999998855432 233444444333210 0
Q ss_pred --------------------------------------------------cceEEEEEEEecCceEEEE-eCCeeeeCCC
Q psy12423 374 --------------------------------------------------THRYMLHIASVGEAKAILC-RQAGSLTFTH 402 (567)
Q Consensus 374 --------------------------------------------------~~~~~l~~a~~Gdsr~~l~-r~~~~~~lt~ 402 (567)
....++++||+||||+|++ |+|+..+||+
T Consensus 120 ~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vanvGDSRayl~~r~g~~~~LT~ 199 (364)
T 2isn_A 120 NVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDGGLTRLSK 199 (364)
T ss_dssp EEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCCCCCCEEEEECTTCEEEEEEEESSCEEEEECTTSCEEECCC
T ss_pred ccccccccccccccchhhhhhhhhhhhhcccccccccccccccccccccccCccEEEEEECccCEEEEEeeCCEEEEcCc
Confidence 0013799999999999999 6899999999
Q ss_pred CCC------------------------------CCCCCCCCCCC---------CCccCCCceEEEEecCCCeEEEEEcCC
Q psy12423 403 APT------------------------------LSPPVPPQGSC---------PLSFPDPHVTEVMLHENDHFLILANKS 443 (567)
Q Consensus 403 dh~------------------------------~~r~~g~~~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDG 443 (567)
||+ ++|++|+..++ ++++++|||..+.+.++| ||||||||
T Consensus 200 DH~~~~~~e~~rI~~~gG~v~~~~~~rv~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDG 278 (364)
T 2isn_A 200 DHKPNHPTEASRIEKAGGSVETFDVPRVDGVLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALSSD-LLLLACDG 278 (364)
T ss_dssp CCCTTSHHHHHHHHHTTCCEEESSSEEETTTBSCSBCEECGGGSCCCSSCGGGSSSBCCCEEEEEEECTTC-EEEEECHH
T ss_pred CCCCCCHHHHHHHHHcCCeEecCCCcccCCceeeEEEecchhhccccccCcccCceEEEeEEEEEECCCCC-EEEEEcCC
Confidence 997 36777876543 467899999999999876 89999999
Q ss_pred CC-----------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 444 VS-----------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 444 l~-----------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
|| +++++|++|++.|+.+|+.||||||||++...
T Consensus 279 l~d~l~~~~~~v~~~~~~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~ 335 (364)
T 2isn_A 279 VYEPSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNSQDNISVMLVAFHNQ 335 (364)
T ss_dssp HHCSSSCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCC
Confidence 99 35678899999999999999999999999743
No 68
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-24 Score=223.71 Aligned_cols=171 Identities=15% Similarity=0.259 Sum_probs=139.2
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhh----hhhhhhhHHHHHHHHHHHHHHhhhc--------------------
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEER----TVKETASDYMKYTMLTAHREIKDSL-------------------- 356 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~----~l~~~~~~~l~~a~l~~n~~i~~~~-------------------- 356 (567)
..+|+++|||++...+.+....++..+.+.. .....+.+++..+|..+++.+....
T Consensus 50 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~l~~~~~~~~~~~~l~~a~~~~d~~i~~~~~~~~~~~~~~~~~~~~~g~~ 129 (358)
T 2irm_A 50 TSLYAILSGHNGVTVAENALQEMAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMN 129 (358)
T ss_dssp EEEEEEEEEESCSHHHHHHHHHHHHHSSSSTTTTCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTTC-----
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 5689999999999999999999998876521 1223457899999999998775421
Q ss_pred -------------------ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeC---C--eeeeCCCCCC-------
Q psy12423 357 -------------------HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQ---A--GSLTFTHAPT------- 405 (567)
Q Consensus 357 -------------------~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~---~--~~~~lt~dh~------- 405 (567)
....+++|++++.+.+. ++++||+||||||++|+ | .+++||+||+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~~~----~l~vAnvGDSRa~l~r~~~~g~~~~~~LT~DH~~~~~~E~ 205 (358)
T 2irm_A 130 QYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRS----HLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEA 205 (358)
T ss_dssp ----------CCCTHHHHHTTTTCEEEEEEEEEESS----EEEEEEESSCEEEEEECCTTCSCEEEECSCCCBTTSHHHH
T ss_pred cccchhhccchhhhcccccCCCCCCCcEEEEEEECC----EEEEEEcccCeEEEEEecCCCceeeEeCCCCCCCCCHHHH
Confidence 12246677777776666 89999999999999998 8 8999999996
Q ss_pred -------------------CCCCCCCCCCC--------------CCccCCCceEE-EEecCCCeEEEEEcCCCC---C--
Q psy12423 406 -------------------LSPPVPPQGSC--------------PLSFPDPHVTE-VMLHENDHFLILANKSVS---E-- 446 (567)
Q Consensus 406 -------------------~~r~~g~~~~~--------------~~~~~~p~v~~-~~l~~~d~~lil~sDGl~---~-- 446 (567)
++|++|+..++ ++++++|||.. +.++++|+|||||||||| +
T Consensus 206 ~Ri~~~Gg~v~~~r~~g~llTRalGd~~~K~~~~~~~~~~~~~~~~v~~~Pdi~~~~~l~~~d~fllL~SDGl~d~l~~~ 285 (358)
T 2irm_A 206 ARLFRLGLMAQNFEGVPLYSTRCIGNYLGKAGYKDCNFLSSATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEI 285 (358)
T ss_dssp HHHHTTTCCGGGGTTCTTCBSBCEECHHHHTTGGGSSSSTTCSSCSSBCCCEEEEEEECCTTEEEEEEECHHHHHHHHHH
T ss_pred HHHHHcCCeEeccCcCCEEcccCCcCHHHhccccccccccccCCCCEeccCeEEEEEEeCCCCcEEEEECCCcccCcccc
Confidence 67889985432 47899999995 999999999999999999 2
Q ss_pred -------------------------HHHHHHHHHHHHHH---------------cC--CCCCcEEEEEEeC
Q psy12423 447 -------------------------PVLAAKRIQDLAQS---------------YG--SEDNLSVLVLRFQ 475 (567)
Q Consensus 447 -------------------------~~~~a~~l~~~a~~---------------~g--~~dnit~~vv~~~ 475 (567)
++.+|+.|++.|+. +| +.||||||||+|.
T Consensus 286 ~~~~~~~~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~Gg~~~DNiTvivv~~~ 356 (358)
T 2irm_A 286 FPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEEHRSVTFNSRDDVTLLIRNFN 356 (358)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCEECCEEEEEEESC
T ss_pred ccccccccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhccccccccccCCCCCCCeEEEEEeCC
Confidence 34578899999976 57 8999999999985
No 69
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.91 E-value=3.6e-24 Score=222.01 Aligned_cols=172 Identities=20% Similarity=0.355 Sum_probs=140.5
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc------cccCceeEEEEeec-Cc
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH------RYSLSATLCHLSLH-PV 373 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~------~~~~st~~~~~~~~-~~ 373 (567)
..++.++||+++...+......++..+.+.......+.+++..+|..+++.+..... ...+++|++.+.+. ..
T Consensus 149 ~~l~~VaDG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~l~~a~~~~n~~i~~~~~~~~~~~~~~~GtT~~~~li~~~~ 228 (389)
T 4da1_A 149 VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI 228 (389)
T ss_dssp EEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHSSCGGGGGCEECEEEEEEETTT
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCeEEEEEEEcCC
Confidence 468899999999999888888888877665544556688999999999998765432 22345555544443 33
Q ss_pred cceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------------------CCCCCCCCCCCC-Ccc
Q psy12423 374 THRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------------------------LSPPVPPQGSCP-LSF 420 (567)
Q Consensus 374 ~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------------------------~~r~~g~~~~~~-~~~ 420 (567)
.+++||+||||+|++|+|+.++||+||+ ++|++|+..+++ .+.
T Consensus 229 ----~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~Ri~~~gG~v~~~~~~~~~~~g~l~ltRalGd~~~k~~~v~ 304 (389)
T 4da1_A 229 ----ELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI 304 (389)
T ss_dssp ----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHHTCCEECC---CCEETTTBSCSBCEECGGGGGGTCB
T ss_pred ----eEEEEEeeccEEEEEECCEeEEeCCCCCCCCHHHHHHHHHcCCeEecccCCCccCCCeEeeEeeeCChhhccCCCC
Confidence 7899999999999999999999999997 356777765543 478
Q ss_pred CCCceEEEEecCC-CeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423 421 PDPHVTEVMLHEN-DHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476 (567)
Q Consensus 421 ~~p~v~~~~l~~~-d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~ 476 (567)
++|++..+.+.++ |+|||||||||| +|+++|+.|++.|+.+|+.||||||||++..
T Consensus 305 ~~pdi~~~~l~~~~dd~llL~SDGL~d~l~~~ei~~il~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~ 377 (389)
T 4da1_A 305 AEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA 377 (389)
T ss_dssp CCCEEEEEECCSSSCEEEEEECHHHHTTCCHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCCSCEEEEEEEECC
T ss_pred CCCceEEEEEcCCCCcEEEEEeCCcccCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEecC
Confidence 9999999999964 789999999999 7889999999999999999999999999984
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.1e-23 Score=207.21 Aligned_cols=200 Identities=27% Similarity=0.296 Sum_probs=157.2
Q ss_pred CCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee----cCCCCCcEEEcCCCccccccCCCCCCcccEEecccC
Q psy12423 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n 177 (567)
++++++++++++|.++.++..-.++++.|++++|.+..+. ..+++|+.|++++|.++.++....+++|++|+|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence 3444555555555555444333345555555555554443 234556666666666666555545789999999999
Q ss_pred CCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchh
Q psy12423 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256 (567)
Q Consensus 178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~ 256 (567)
.++.+|..+..+++|++|++++|+|+.++...|.. +++|++|+|++|+|+.+|. .+..+++|+.|+|++|+|+.+|+.
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 99999998999999999999999999999887776 9999999999999999876 468899999999999999999999
Q ss_pred hhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA 302 (567)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~ 302 (567)
+|..+++|+.|+|++|+|+.+|..++....|....+..|+|.|.|.
T Consensus 167 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999999999999999998888888888888888776544
No 71
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=99.91 E-value=1.8e-24 Score=228.14 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=134.4
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhh-------hhh----------------------------------------
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEE-------RTV---------------------------------------- 333 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~-------~~l---------------------------------------- 333 (567)
..+|++||||+|..++.++...++..+... ...
T Consensus 66 ~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 145 (467)
T 2pnq_A 66 GMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYW 145 (467)
T ss_dssp CEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCCCCSTTHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccccccccccccchhhhhhhhhcchhhhh
Confidence 468999999999999999988887766432 000
Q ss_pred -----------h-hhhhHHHHHHHHHHHHHHhhhcc--------------cccCceeEEEEeecCccceEEEEEEEecCc
Q psy12423 334 -----------K-ETASDYMKYTMLTAHREIKDSLH--------------RYSLSATLCHLSLHPVTHRYMLHIASVGEA 387 (567)
Q Consensus 334 -----------~-~~~~~~l~~a~l~~n~~i~~~~~--------------~~~~st~~~~~~~~~~~~~~~l~~a~~Gds 387 (567)
. ....+++..+|..+++.+..... ...+++|++++.+.+. .+++||+|||
T Consensus 146 ~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~----~l~vAnvGDS 221 (467)
T 2pnq_A 146 QELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGV----DLHVANTGDS 221 (467)
T ss_dssp HHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETT----EEEEEEESSC
T ss_pred hhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECC----EEEEEECCCc
Confidence 0 14578899999999998865432 2345666666666665 8999999999
Q ss_pred eEEEEeC---C--eeeeCCCCCC---------------------------------CCCCCCCCCC--------------
Q psy12423 388 KAILCRQ---A--GSLTFTHAPT---------------------------------LSPPVPPQGS-------------- 415 (567)
Q Consensus 388 r~~l~r~---~--~~~~lt~dh~---------------------------------~~r~~g~~~~-------------- 415 (567)
|||++|. | .+++||+||+ ++|++|+..+
T Consensus 222 Ra~l~r~~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~Rv~G~l~vtRAlGd~~~K~~~~~~~~~~~~~ 301 (467)
T 2pnq_A 222 RAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESG 301 (467)
T ss_dssp EEEEEEECTTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSSSBTTTBSSSBCEECGGGTSCHHHHHHHHSSS
T ss_pred eEEEEEecCCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecCccccccccchhcCchhhcccchhhhhhhccc
Confidence 9999994 6 6899999998 4788888742
Q ss_pred -------------------CCCccCCCceEEEEecCCCeEEEEEcCCCC----------------------CH-------
Q psy12423 416 -------------------CPLSFPDPHVTEVMLHENDHFLILANKSVS----------------------EP------- 447 (567)
Q Consensus 416 -------------------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------------~~------- 447 (567)
.|+++++|||..+.++++|+|||||||||| +|
T Consensus 302 ~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p~~~~~~~ 381 (467)
T 2pnq_A 302 PDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYK 381 (467)
T ss_dssp CC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCSSCC--------
T ss_pred ccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChHHHHHHHHHHHhhccccCcccccccC
Confidence 256899999999999999999999999999 23
Q ss_pred -----------------------HHHHHHHHHHHHHcC-----------------------CCCCcEEEEEEeC
Q psy12423 448 -----------------------VLAAKRIQDLAQSYG-----------------------SEDNLSVLVLRFQ 475 (567)
Q Consensus 448 -----------------------~~~a~~l~~~a~~~g-----------------------~~dnit~~vv~~~ 475 (567)
+.+|..|++.|+..| ++|||||+||+|.
T Consensus 382 ~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R~~~DdITViVv~~~ 455 (467)
T 2pnq_A 382 VTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFN 455 (467)
T ss_dssp -----------------------CCHHHHHHHHHHC-------------------------CCSCEEEEEEEEC
T ss_pred ccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHhhhcCCccccccCCCCcEEEEEEeC
Confidence 346889999999875 4899999999996
No 72
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=99.91 E-value=3.4e-24 Score=217.60 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=135.4
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------------------hhhhhHHHHHHHHHHHHHHhhhcc---
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------------------KETASDYMKYTMLTAHREIKDSLH--- 357 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------------------~~~~~~~l~~a~l~~n~~i~~~~~--- 357 (567)
..+|.++|||++...+.+....++..+.+...+ ...+.+++..+|..+++.+.....
T Consensus 53 ~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~ 132 (324)
T 2i44_A 53 CAFFGVFDGTVGDFASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMCEQLN 132 (324)
T ss_dssp EEEEEEEEEESSSHHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 568999999999999999888888877653211 223478899999999998865432
Q ss_pred --cccCceeEEEEeecCccceEEEEEEEecCceEEEEeC---C-eeeeCCCCCCC-------------------------
Q psy12423 358 --RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQ---A-GSLTFTHAPTL------------------------- 406 (567)
Q Consensus 358 --~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~---~-~~~~lt~dh~~------------------------- 406 (567)
..+++++++. +... ++++||+||||+|++|+ | ..++||+||+.
T Consensus 133 ~~~~g~gtt~~~--i~~~----~l~vanvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~~~~~~ 206 (324)
T 2i44_A 133 KDYASSTSVTAV--LAKG----FVAVGHLGDSRIAMGVETPNGLNCEFLTVDHKPDMPHEKLRIMRNGGSVEYLHNHNNK 206 (324)
T ss_dssp CSSCEECEEEEE--EETT----EEEEEEESSCEEEEEEEETTEEEEEESCCCCCTTSHHHHHHHHHTTCEEECCTTCTTS
T ss_pred CCCCCCCeEEEE--EECC----eEEEEEccCceEEEEeccCCCceEEECCCCCCCcCHHHHHHHHHcCCEEEecccccCC
Confidence 2344555543 3444 89999999999999997 6 78999999983
Q ss_pred ----------CCCCCC----CCC----------CCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423 407 ----------SPPVPP----QGS----------CPLSFPDPHVTEVMLHENDHFLILANKSVS----------------- 445 (567)
Q Consensus 407 ----------~r~~g~----~~~----------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------- 445 (567)
+|++|+ ..+ .++++++|||..+++.++|+||||||||||
T Consensus 207 ~~~~~g~l~~sra~Gd~p~~~~~~~~~g~~~~~~~~v~~~pdv~~~~l~~~d~~llLaSDGl~d~ls~~ei~~~v~~~~~ 286 (324)
T 2i44_A 207 PFIRGGDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQ 286 (324)
T ss_dssp CEEECTTHHHHHHTTCCCCCBSSSBCEECGGGTTTTCBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccccCcccchhhcCCccccceeccccCCccccCCeEeecCEEEEEEcCCCCeEEEEEcCchhccCCHHHHHHHHHHHHh
Confidence 346677 221 356789999999999999889999999999
Q ss_pred ---CHHH--HHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423 446 ---EPVL--AAKRIQDLAQSYGSEDNLSVLVLRFQGS 477 (567)
Q Consensus 446 ---~~~~--~a~~l~~~a~~~g~~dnit~~vv~~~~~ 477 (567)
+++. +|+.|++.|+.+|+.||||||||++.+.
T Consensus 287 ~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~~ 323 (324)
T 2i44_A 287 EGRNPAQALVEMTLAEQQSRNQSADNITAMTVFFKKT 323 (324)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEC--
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeeCC
Confidence 4677 9999999999999999999999998743
No 73
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=99.91 E-value=2e-24 Score=224.59 Aligned_cols=172 Identities=18% Similarity=0.238 Sum_probs=137.1
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhh----hhhhhhHHHHHHHHHHHHHHhhhc--------------------
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT----VKETASDYMKYTMLTAHREIKDSL-------------------- 356 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~----l~~~~~~~l~~a~l~~n~~i~~~~-------------------- 356 (567)
..+|+++|||++..++.+....++..+.+... ....+.+++..+|..+++.+....
T Consensus 62 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~ 141 (401)
T 2j4o_A 62 CFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQ 141 (401)
T ss_dssp EEEEEEEEEESSSHHHHHHHHHHHHTTSSSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCS
T ss_pred eEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 56899999999999999999999887754221 123457888889988877654321
Q ss_pred ------------------ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCC----eeeeCCCCCC---------
Q psy12423 357 ------------------HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQA----GSLTFTHAPT--------- 405 (567)
Q Consensus 357 ------------------~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~----~~~~lt~dh~--------- 405 (567)
....+++|++++.+... ++++||+||||||++|++ ..++||+||+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~----~l~vanvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~R 217 (401)
T 2j4o_A 142 HQLPPQYQKILERLKTLEREISGGAMAVVAVLLNN----KLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFR 217 (401)
T ss_dssp SCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETT----EEEEEEESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHH
T ss_pred cccccccchhhhhhhcccccCCCccCEEEEEEECC----EEEEEEccCceEEEEEcCCCCceEEECCCCCCCCCHHHHHH
Confidence 12245666666666665 899999999999999988 8999999997
Q ss_pred ---------------------CCCCCCCCCC--------------CCCccCCCceEE-EEecCCCeEEEEEcCCCCC---
Q psy12423 406 ---------------------LSPPVPPQGS--------------CPLSFPDPHVTE-VMLHENDHFLILANKSVSE--- 446 (567)
Q Consensus 406 ---------------------~~r~~g~~~~--------------~~~~~~~p~v~~-~~l~~~d~~lil~sDGl~~--- 446 (567)
++|++|+..+ .++++++|||.. +.++++|+||||||||||+
T Consensus 218 i~~~Gg~v~~~~~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~ 297 (401)
T 2j4o_A 218 LSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALE 297 (401)
T ss_dssp HHTTTCCHHHHHHHCCBTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred HHHcCCCeeeccCccccCCcccccccCCHhhcccccccccccccCCCCeeccceEEEeEEeCCCCcEEEEEccchhhccc
Confidence 5688887532 267899999996 9999999999999999992
Q ss_pred -------------------------HHHHHHHHHHHHHH-------cCC--------CCCcEEEEEEeCC
Q psy12423 447 -------------------------PVLAAKRIQDLAQS-------YGS--------EDNLSVLVLRFQG 476 (567)
Q Consensus 447 -------------------------~~~~a~~l~~~a~~-------~g~--------~dnit~~vv~~~~ 476 (567)
++.+|+.|++.|+. +|+ .||||||||+|..
T Consensus 298 ~~~~~~~s~~ei~~~v~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G~~~~~~~~~~DNiTvivv~~~~ 367 (401)
T 2j4o_A 298 AAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGY 367 (401)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSCSSGGGGCSEECCEEEEEEEEBC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCCCeEEEEEEcCC
Confidence 34578999999875 776 8999999999984
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.3e-23 Score=211.99 Aligned_cols=199 Identities=20% Similarity=0.174 Sum_probs=158.3
Q ss_pred CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423 81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l 157 (567)
.++++.|+|++|.++..+ .+..+++|++|++++|.++.++ ++.+++|++|++++|.+..++....
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~------------ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA------------ 147 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG------------
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh------------
Confidence 357888888888887655 4667888888888888887664 5677777777777776654432110
Q ss_pred ccccCCCCCCcccEEecccCCCC-CcccccC---------CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423 158 QSLIVSPRPARLQHLDISYNELE-SLPDWID---------TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 158 ~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~l~---------~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
.+++|++|++++|++. .+|..+. .+++|++|+|++|.++.+|..+.. +++|++|+|++|.+
T Consensus 148 -------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 148 -------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPL 218 (328)
T ss_dssp -------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCC
T ss_pred -------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCC
Confidence 1457777888775443 5665544 499999999999999999987654 99999999999999
Q ss_pred CCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 228 ~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
+++|..+..+++|++|+|++|.+....+..+..+++|+.|+|++|++. .+|..+.++.+|..+++..|.+.+.
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 999999999999999999999888666666789999999999998765 8898888999999999988776654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.6e-23 Score=205.06 Aligned_cols=214 Identities=22% Similarity=0.278 Sum_probs=157.1
Q ss_pred EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423 3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG 82 (567)
Q Consensus 3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 82 (567)
.++..+..++++|..+. ++|++|+|++|.++.++...+ ..++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~------------------------------------~~l~ 52 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSF------------------------------------FSFP 52 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTT------------------------------------TTCT
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHh------------------------------------cccc
Confidence 34556667777776554 467888888887777654332 2345
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l 157 (567)
+|++|++++|+++... .+..+++|++|++++|.++.++ +..+++|++|++++|. +
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------l 112 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--------------------L 112 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC--------------------C
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC--------------------c
Confidence 6777777777777554 4667777777777777776653 4444555555555444 4
Q ss_pred ccccCCCC--CCcccEEecccCCCCC--cccccCCCcCCcEEECcCCCCCCCChhhhhccCCCcc----EEECCCCCCCC
Q psy12423 158 QSLIVSPR--PARLQHLDISYNELES--LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLH----TLQLSFNRLTS 229 (567)
Q Consensus 158 ~~~~~~~~--~~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~----~L~Ls~N~l~~ 229 (567)
+.+....+ +++|++|++++|.++. +|..+..+++|++|++++|+++.++...+.. +.+|+ .|++++|.++.
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCE
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCcccc
Confidence 44443333 6789999999999886 6788899999999999999999887766554 55666 89999999998
Q ss_pred CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 230 LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 230 lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
++.......+|+.|+|++|.|+.+|+..|..+++|+.|+|++|+++
T Consensus 192 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 8776656668999999999999999888888999999999999887
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=213.91 Aligned_cols=242 Identities=17% Similarity=0.147 Sum_probs=200.3
Q ss_pred CCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc
Q psy12423 19 DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI 98 (567)
Q Consensus 19 ~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 98 (567)
..++.....+++++.++.+|..++ ++|++|++++|+++...
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~---------------------------------------~~L~~L~l~~n~i~~~~ 68 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT---------------------------------------EAVKSLDLSNNRITYIS 68 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC---------------------------------------TTCCEEECTTSCCCEEC
T ss_pred CCCCCCeEeeCCCCCccccccccc---------------------------------------ccCcEEECCCCcCcccC
Confidence 345667778899999998887552 37999999999999765
Q ss_pred --ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEEEcCCCccccccC-CCC--C
Q psy12423 99 --ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNKLQSLIV-SPR--P 166 (567)
Q Consensus 99 --~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~l~~~~~-~~~--~ 166 (567)
.+..+++|++|++++|.++.+. +..+++|++|++++|+++.++ ..+++|+.|++++|.++.++. ..+ +
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l 148 (353)
T 2z80_A 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence 5899999999999999999863 778899999999999999876 357899999999999998877 334 8
Q ss_pred CcccEEecccC-CCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEE
Q psy12423 167 ARLQHLDISYN-ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYL 243 (567)
Q Consensus 167 ~~L~~L~Ls~n-~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L 243 (567)
++|++|++++| .++.++ ..+..+++|++|++++|.++.+++..+.. +++|++|++++|.++.+|.. +..+++|+.|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEE
Confidence 99999999999 577774 57899999999999999999776555554 89999999999999988875 4568999999
Q ss_pred EccCCCCCCCchhhh---cCCCCCcEEEccCCcCC-----CCCCCCcCCccceeecccCCccccC
Q psy12423 244 FLQSNSINILPQLFL---QNSSKLKVLNISKNCLK-----MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l---~~l~~L~~L~Ls~N~l~-----~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
++++|.++.++...+ .....++.+++++|.++ .+|+.+..+++|..+++..|.+...
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 999999998765432 34677889999999887 5777667777888888887777654
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.7e-24 Score=230.65 Aligned_cols=226 Identities=17% Similarity=0.239 Sum_probs=194.4
Q ss_pred CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|++|+|++|.|+.++ ..|..+++|++|+|++|.|+++++ + .
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-------------------------------------~ 77 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-------------------------------------E 77 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-------------------------------------T
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-------------------------------------c
Confidence 689999999999886 589999999999999999986543 1 2
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee----cCCCCCcEEEcCCC
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNN 155 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n 155 (567)
.+++|++|+|++|.+++.. ..++|+.|++++|.++.++...+++|+.|++++|.++.+. ..+++|+.|++++|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 78 SLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp TCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred cCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 3568999999999887654 3388999999999999988778899999999999998774 34689999999999
Q ss_pred ccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423 156 KLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 156 ~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 232 (567)
.+++..+..+ +++|++|+|++|.++.+|. +..+++|+.|+|++|.|+.+|+.+.. +++|+.|+|++|.|+.+|.
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECT
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEecCCcCcccch
Confidence 9998776655 6899999999999998865 34689999999999999999888543 8999999999999999999
Q ss_pred hhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEcc
Q psy12423 233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNIS 270 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls 270 (567)
.+..+++|+.|++++|.+. ..++.++..++.|+.|+++
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999999999998 4444556788888888886
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1e-22 Score=202.87 Aligned_cols=199 Identities=24% Similarity=0.321 Sum_probs=158.1
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc-
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK- 156 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~- 156 (567)
+|++|++++|.++... .+..+++|++|++++|.++.+. +..+++|++|++ ++|.
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~~n~~ 92 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL--------------------SDNAQ 92 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--------------------CSCTT
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC--------------------CCCCC
Confidence 5667777777766544 3666667777777777666542 444445555544 4454
Q ss_pred cccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-
Q psy12423 157 LQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS- 232 (567)
Q Consensus 157 l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~- 232 (567)
++.+.+..+ +++|++|++++|.++.+ |..+..+++|++|++++|.++.++...+.. +++|++|+|++|.++.+|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHH
Confidence 444444444 78999999999999977 567899999999999999999999887765 9999999999999999876
Q ss_pred hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCc
Q psy12423 233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDA 302 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~ 302 (567)
.+..+++|++|+|++|.++.+++..+..+++|+.|++++|+++.+|.. +..+..|..+++..|.+.+.+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 588999999999999999999887889999999999999999999865 5578888888888888876544
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.4e-24 Score=219.46 Aligned_cols=240 Identities=19% Similarity=0.136 Sum_probs=119.2
Q ss_pred CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC-------CCCCCccEEEec
Q psy12423 18 QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP-------EVKGELTSVNLR 90 (567)
Q Consensus 18 ~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~l~~L~~L~Ls 90 (567)
++..++|+.|++++|.+ .+|..++..++.|... .+....... +... ..+++|++|+|+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~-------------~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLK-------------RLTVRAARI-PSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCC-------------EEEEEEEEC-BHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EccCCCceeEeeccccc-ccHHHHHHHHhhcccc-------------cccccCCCc-CHHHHHHHHHhcCcCCccEEEcc
Confidence 45667899999999999 8888776543333211 111110000 0000 135677777777
Q ss_pred CCCCCCcc--cc--CCCCCccEEEccCCCCCCCC--Cccc-----ccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423 91 SNQLKGTI--IL--GNYGNLTTLDVSENSIESLD--LGAL-----NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 91 ~n~l~~~~--~l--~~l~~L~~L~L~~n~l~~~~--~~~l-----~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~ 159 (567)
+|.+++.. .+ ..+++|++|++++|.++.++ +..+ ++|++|++++|++..++
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------------------ 165 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS------------------ 165 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC------------------
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch------------------
Confidence 77776533 22 66677777777777776652 2233 55666666666555443
Q ss_pred ccCCCC--CCcccEEecccCCCCC---ccccc--CCCcCCcEEECcCCCCCCC---ChhhhhccCCCccEEECCCCCCCC
Q psy12423 160 LIVSPR--PARLQHLDISYNELES---LPDWI--DTCPELETIFASHNRITQL---PSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 160 ~~~~~~--~~~L~~L~Ls~n~l~~---lp~~l--~~l~~L~~L~Ls~N~l~~l---~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+..+ +++|++|+|++|.+.. +|..+ ..+++|++|+|++|.++.+ +..++.. +++|++|+|++|.+++
T Consensus 166 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 166 --CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRD 242 (312)
T ss_dssp --TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCS
T ss_pred --HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-CCCCCEEECCCCcCCc
Confidence 3222 4445555555554431 12222 4445555555555555422 2222222 4455555555555544
Q ss_pred Cc--hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc
Q psy12423 230 LP--SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF 297 (567)
Q Consensus 230 lp--~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~ 297 (567)
.+ ..+..+++|++|+|++|.|+.+|..++ ++|+.|+|++|+|+.+|. +..+++|..+++..|.+
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred ccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 22 223334455555555555554444332 445555555555554443 34444444444444443
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.3e-22 Score=195.56 Aligned_cols=193 Identities=24% Similarity=0.387 Sum_probs=139.6
Q ss_pred CCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc--cc
Q psy12423 23 RLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--IL 100 (567)
Q Consensus 23 ~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l 100 (567)
+++.++++++.++.+|..++ ++|++|+|++|+++... .+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---------------------------------------~~l~~L~l~~n~l~~~~~~~~ 57 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---------------------------------------ADTKKLDLQSNKLSSLPSKAF 57 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---------------------------------------TTCSEEECCSSCCSCCCTTSS
T ss_pred CCCEEEccCCCCCccCCCCC---------------------------------------CCCCEEECcCCCCCeeCHHHh
Confidence 56778888888887775442 26777888888877655 47
Q ss_pred CCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC--CCcccEEecc
Q psy12423 101 GNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDIS 175 (567)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls 175 (567)
..+++|++|++++|.++.++ +..+++|++|++++|.+..+ ++..+ +++|++|+++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL--------------------PIGVFDQLVNLAELRLD 117 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC--------------------CTTTTTTCSSCCEEECC
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC--------------------CHhHcccccCCCEEECC
Confidence 77888888888888877664 34455555555555544332 22222 4677778888
Q ss_pred cCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCC
Q psy12423 176 YNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINIL 253 (567)
Q Consensus 176 ~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l 253 (567)
+|.++.++. .|..+++|++|+|++|.++.++...+.. +++|++|+|++|.++.++. .+..+++|++|+|++|.|+.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 887776653 5677888888888888888887776655 7888888888888887765 467788888888888888888
Q ss_pred chhhhcCCCCCcEEEccCCcCC
Q psy12423 254 PQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
|+..|..+++|+.|+|++|++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 8877777888888888888775
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.7e-24 Score=217.32 Aligned_cols=214 Identities=17% Similarity=0.127 Sum_probs=160.2
Q ss_pred CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC----Cc-------ccccCcEEEcccCccccee------c
Q psy12423 81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD----LG-------ALNRLESIKCSRNQLKTLV------L 142 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~----~~-------~l~~L~~L~ls~n~l~~l~------~ 142 (567)
.++|+.|++++|.+ ..+ .+.. .|+.|++++|.+.... +. .+++|++|++++|.+++.. .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 34667777777777 322 2222 2777777777775432 11 4677888888888776422 3
Q ss_pred CCCCCcEEEcCCCccccccCCCC--C-----CcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCC---CChhh-h
Q psy12423 143 NGSSLISVIAGNNKLQSLIVSPR--P-----ARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQ---LPSQF-F 210 (567)
Q Consensus 143 ~~~~L~~L~l~~n~l~~~~~~~~--~-----~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~---l~~~~-~ 210 (567)
.+++|+.|++++|.+++. +..+ + ++|++|+|++|.++.++ ..+..+++|++|++++|++.. ++..+ +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 457788888888888777 3322 2 89999999999999886 689999999999999999763 23333 2
Q ss_pred hccCCCccEEECCCCCCCCCch----hhhCCCCCcEEEccCCCCCCCc-hhhhcCCCCCcEEEccCCcCCCCCCCCcCCc
Q psy12423 211 CRELGKLHTLQLSFNRLTSLPS----LIRQIASLKYLFLQSNSINILP-QLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285 (567)
Q Consensus 211 ~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~ 285 (567)
.. +++|++|+|++|.|+.++. .+..+++|++|+|++|.|+..+ ...+..+++|+.|+|++|+|+.+|..+. .
T Consensus 198 ~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 198 LK-FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp TS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred cc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 33 8999999999999996543 3467899999999999999866 3456678999999999999999998776 6
Q ss_pred cceeecccCCccccCC
Q psy12423 286 LLNISQLRLPGFCNSD 301 (567)
Q Consensus 286 ~L~~~~l~~~~~~~~~ 301 (567)
+|..+++..|.+.+.+
T Consensus 275 ~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNP 290 (312)
T ss_dssp EEEEEECCSSCCCSCC
T ss_pred CceEEECCCCCCCCCh
Confidence 7778888777776553
No 82
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=99.88 E-value=4.4e-22 Score=194.43 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=132.7
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhh-hh--h--hhhhhHHHHHHHHHHHHHHhhhccc---ccCceeEEEEeecC
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEE-RT--V--KETASDYMKYTMLTAHREIKDSLHR---YSLSATLCHLSLHP 372 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~-~~--l--~~~~~~~l~~a~l~~n~~i~~~~~~---~~~st~~~~~~~~~ 372 (567)
..++.++||+++...+......+...+.++ .. . ...+.+++..++..+++.+...... .++++|++.+.+.+
T Consensus 34 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~gtT~~~~~i~~ 113 (250)
T 2pk0_A 34 VPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVG 113 (250)
T ss_dssp CEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEECEEEEEEET
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEEEC
Confidence 468899999998877666666666655422 11 1 3345778999999999987665432 34556666666665
Q ss_pred ccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEE
Q psy12423 373 VTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEV 428 (567)
Q Consensus 373 ~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~ 428 (567)
. ++++||+||||+|++|+|+..+||.||+ ++|++|+.. .++|++..+
T Consensus 114 ~----~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~ltralG~~~-----~~~p~~~~~ 184 (250)
T 2pk0_A 114 D----NIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNIITQSIGQAN-----PVEPDLGVH 184 (250)
T ss_dssp T----EEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSSCHHHHHTCCSCCCBSCCBSCSS-----CCCCEEEEE
T ss_pred C----eEEEEEeCCCeEEEEcCCcEEEeCCCCCHHHHHHHcCCCCHHHHHhCCCcceEEeecCCCC-----CccceEEEE
Confidence 5 8999999999999999999999999997 377888654 568999999
Q ss_pred EecCCCeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCC
Q psy12423 429 MLHENDHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSE 478 (567)
Q Consensus 429 ~l~~~d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~~ 478 (567)
++.++| +||||||||| +++.+|+.|++.|..+|+.|||||+||++.+++
T Consensus 185 ~l~~gd-~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~g~~DniTvivv~~~~~~ 249 (250)
T 2pk0_A 185 LLEEGD-YLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALVYVESEA 249 (250)
T ss_dssp ECCTTC-EEEEECHHHHTTSCHHHHHHHHTSSSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECC--
T ss_pred EcCCCC-EEEEECCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCeEEEEEEeeCCc
Confidence 999875 6889999999 688899999999999999999999999998543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=9.3e-22 Score=196.47 Aligned_cols=198 Identities=28% Similarity=0.369 Sum_probs=155.1
Q ss_pred cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCC
Q psy12423 17 NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG 96 (567)
Q Consensus 17 ~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 96 (567)
.+.++++|+++++++|.++.+|..++ ++++.|+|++|.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---------------------------------------~~l~~L~L~~N~l~~ 45 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP---------------------------------------KDTTILHLSENLLYT 45 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC---------------------------------------TTCCEEECTTSCCSE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC---------------------------------------CCCCEEEcCCCcCCc
Confidence 36678888888888888888886552 267888888888876
Q ss_pred cc--ccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC-CCcccEE
Q psy12423 97 TI--ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR-PARLQHL 172 (567)
Q Consensus 97 ~~--~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L 172 (567)
.. .+..+++|++|++++|.++.++ ...+++|++|++++|++..++ .... +++|++|
T Consensus 46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------~~~~~l~~L~~L 105 (290)
T 1p9a_G 46 FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP--------------------LLGQTLPALTVL 105 (290)
T ss_dssp EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC--------------------CCTTTCTTCCEE
T ss_pred cCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCc--------------------hhhccCCCCCEE
Confidence 54 5778888888888888887753 355566666666666554332 2111 5688889
Q ss_pred ecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCC
Q psy12423 173 DISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSI 250 (567)
Q Consensus 173 ~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l 250 (567)
+|++|+++.+| ..|..+++|++|+|++|+|+.++...|.. +++|+.|+|++|+|+.+|.. +..+++|++|+|++|+|
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 99999888886 57888899999999999999888887765 88999999999999988764 57789999999999999
Q ss_pred CCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 251 NILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 251 ~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+.+|..++ .+++|+.|+|++|++.
T Consensus 185 ~~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 185 YTIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CccChhhc-ccccCCeEEeCCCCcc
Confidence 99988875 5678999999999886
No 84
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=99.88 E-value=7.5e-22 Score=191.17 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=131.5
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhh--hhhhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeecCcc
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT--VKETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLHPVT 374 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~--l~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~~~~ 374 (567)
..++.++||+++...+......+...+.+... ....+.+++..++..++..+..... ..++++|++.+...+.
T Consensus 28 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~gtT~~~~~i~~~- 106 (237)
T 1txo_A 28 ARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGN- 106 (237)
T ss_dssp SSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHHHHHHHHCGGGTTCEECEEEEEEETT-
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcceEEEEEEECC-
Confidence 56899999999988888888877777655332 1234578899999999887765432 2345666666666665
Q ss_pred ceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEEEe
Q psy12423 375 HRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEVML 430 (567)
Q Consensus 375 ~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~~l 430 (567)
++++||+||||+|++|+|+..+||+||+ ++|++|+ ..++|++..+++
T Consensus 107 ---~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~~~~~G~i~~~~~~~~~~~~~~tr~lg~------~~~~p~~~~~~l 177 (237)
T 1txo_A 107 ---RLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMRALTG------HEVEPTLTMREA 177 (237)
T ss_dssp ---EEEEEEESSCEEEEEETTEEEECSCCCBHHHHHHHTTSSCTTGGGGCTTTTCBCCCBSS------SCCCCEEEEEEC
T ss_pred ---EEEEEEEccCcEEEEeCCEeEEeCCCCCHHHHHHHcCCCCHHHHhhCccccceeeccCC------CCccceEEEEec
Confidence 8999999999999999999999999998 2444443 357899999999
Q ss_pred cCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423 431 HENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475 (567)
Q Consensus 431 ~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~ 475 (567)
.++|. +|||||||| +|+.+|+.|++.|+.+|+.|||||+||++.
T Consensus 178 ~~~d~-lvl~SDGl~d~l~~~~i~~~~~~~~~~~~a~~L~~~a~~~g~~DniTvivv~~~ 236 (237)
T 1txo_A 178 RAGDR-YLLCSDGLSDPVSDETILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADLE 236 (237)
T ss_dssp CTTCE-EEEECHHHHTTSCHHHHHHHHTSSSHHHHHHHHHHHHHHTTCCSCEEEEEEEEE
T ss_pred CCCCE-EEEECCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEee
Confidence 99865 579999999 688999999999999999999999999874
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.1e-21 Score=197.79 Aligned_cols=194 Identities=18% Similarity=0.291 Sum_probs=170.5
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCc
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNK 156 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~ 156 (567)
.+++|++|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ ..+++|+.|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence 46689999999999988778888999999999999998875 888999999999999998875 457899999999999
Q ss_pred cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423 157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236 (567)
Q Consensus 157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 236 (567)
++.++....+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +.. +++|+.|+|++|.++.++. +..
T Consensus 119 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~~~-l~~ 193 (308)
T 1h6u_A 119 ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKADDNKISDISP-LAS 193 (308)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcC-CCCCCEEECCCCccCcChh-hcC
Confidence 9988764448899999999999998876 8889999999999999998877 333 8999999999999999876 788
Q ss_pred CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
+++|++|+|++|.++.+++ +..+++|+.|++++|+++.+|..
T Consensus 194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCee
Confidence 9999999999999998885 67899999999999999988754
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.1e-21 Score=188.49 Aligned_cols=197 Identities=28% Similarity=0.348 Sum_probs=157.0
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~ 159 (567)
.++.++++++.++..+. .-.++|+.|++++|.++.++ +..+++|++|++ ++|.++.
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~~n~l~~ 75 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--------------------NDNKLQT 75 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC--------------------CSSCCSC
T ss_pred CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC--------------------CCCccCe
Confidence 46677777777765441 11256777777777776654 344445555555 4555555
Q ss_pred ccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hh
Q psy12423 160 LIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IR 235 (567)
Q Consensus 160 ~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~ 235 (567)
++...+ +++|++|++++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|++|+|++|.++.+|.. +.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHcc
Confidence 544443 6899999999999998874 6789999999999999999999888766 99999999999999998864 78
Q ss_pred CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~ 301 (567)
.+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|... ..+.+|..+++..|.+.+.+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999999999999999999988899999999999999999999864 46788999999888886554
No 87
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6e-22 Score=200.13 Aligned_cols=215 Identities=19% Similarity=0.258 Sum_probs=186.7
Q ss_pred CCccEEEecCCCCCC--cc--ccCCCCCccEEEccC-CCCCC-C--CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423 82 GELTSVNLRSNQLKG--TI--ILGNYGNLTTLDVSE-NSIES-L--DLGALNRLESIKCSRNQLKTLV----LNGSSLIS 149 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~--~~--~l~~l~~L~~L~L~~-n~l~~-~--~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~ 149 (567)
.+++.|+|++|.+.+ .. .+..+++|++|++++ |.+.. + .+..+++|++|++++|.+.... ..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999997 33 788999999999995 88875 3 3788999999999999998443 45789999
Q ss_pred EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCc-CCcEEECcCCCCC-CCChhhhhccCCCccEEECCC
Q psy12423 150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCP-ELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSF 224 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~ 224 (567)
|++++|.+++..+..+ +++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+.. +. |+.|+|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--CC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--Cc-ccEEECcC
Confidence 9999999997666655 899999999999999 8899999998 9999999999999 56665543 55 99999999
Q ss_pred CCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423 225 NRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 225 N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
|.+++ +|..+..+++|+.|+|++|.++..++. +..+++|++|+|++|+|+ .+|..+..+.+|..+++..|.+.+.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99985 667889999999999999999977766 578999999999999999 8888888899999999988887643
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=8.8e-22 Score=190.82 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=48.9
Q ss_pred EEecccC-CCCCccc-ccCCCcCCc-EEECcCCCCCCCChhhhhccCCCccEEECCCCC-CCCCch-hhhCC-CCCcEEE
Q psy12423 171 HLDISYN-ELESLPD-WIDTCPELE-TIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPS-LIRQI-ASLKYLF 244 (567)
Q Consensus 171 ~L~Ls~n-~l~~lp~-~l~~l~~L~-~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l-~~L~~L~ 244 (567)
+|++++| .++.+|. .|..+++|+ .|++++|.++.+|...|. .++|+.|+|++|. ++.+|. .+..+ ++|+.|+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 5555555 5555443 355555555 555555555555554443 2455555555552 554432 34444 5555555
Q ss_pred ccCCCCCCCchhhhcCCCCCcEEEccCC
Q psy12423 245 LQSNSINILPQLFLQNSSKLKVLNISKN 272 (567)
Q Consensus 245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N 272 (567)
+++|.|+.+|.. .+++|+.|+++++
T Consensus 212 l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 212 VSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCccccCChh---HhccCceeeccCc
Confidence 555555555543 3444555555443
No 89
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=99.86 E-value=5.6e-21 Score=185.37 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=123.6
Q ss_pred ceeeccCCCCchhhhHHhhhhHHHHHhhhh--h---hhhhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEEeec--
Q psy12423 303 LIGIFDSGDNGDIASTLVQSIPRILLEERT--V---KETASDYMKYTMLTAHREIKDSLHR----YSLSATLCHLSLH-- 371 (567)
Q Consensus 303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~--l---~~~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~~~~-- 371 (567)
++.++||+++...+......+...+.+... . ...+.+++..++..+++.+...... .++++|++.+.+.
T Consensus 29 ~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~i~~~ 108 (240)
T 2j82_A 29 FFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEK 108 (240)
T ss_dssp EEEEEEBC---CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHTTSCSCTTCCBCEEEEEECTT
T ss_pred EEEEEcCCCCchHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEec
Confidence 899999998875555444444443332211 1 3356788999999999988765432 2345666666666
Q ss_pred CccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEE
Q psy12423 372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTE 427 (567)
Q Consensus 372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~ 427 (567)
.. ++++||+||||+|++|+|+..+||.||+ ++|++|+.. .++|++..
T Consensus 109 ~~----~l~~anvGDsr~~l~r~~~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~ltralG~~~-----~~~p~~~~ 179 (240)
T 2j82_A 109 GD----RAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGRED-----LSQIDIQP 179 (240)
T ss_dssp SS----EEEEEEESSCEEEEEETTEEEECSCCCBHHHHC----------------CCCBSCCBSCTT-----CCCCEEEE
T ss_pred CC----EEEEEEEccCceEEEeCCEEEEECCCCcHHHHHHHcCCCCHHHHhcCCCcCeEeecCCCCC-----ceeEEEEE
Confidence 44 8999999999999999999999999997 466777643 56899999
Q ss_pred EEecCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423 428 VMLHENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474 (567)
Q Consensus 428 ~~l~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~ 474 (567)
+.+.++|. ||||||||| +++.+|+.|++.|..+|+.|||||+||++
T Consensus 180 ~~l~~gd~-lll~SDGl~d~l~~~~i~~~l~~~~~~~~a~~l~~~a~~~g~~DniTvivv~~ 240 (240)
T 2j82_A 180 IDLEPGDR-LLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV 240 (240)
T ss_dssp EECCTTCE-EEEECHHHHTTSCHHHHHHHHTCSSHHHHHHHHHHHHHHTTCCSCEEEEEEEC
T ss_pred EeeCCCCE-EEEECCCCCCCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Confidence 99999765 779999999 57889999999999999999999999975
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.4e-21 Score=194.80 Aligned_cols=233 Identities=21% Similarity=0.249 Sum_probs=156.2
Q ss_pred cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
++++.+++++++||..+. ++|++|+|++|+|+.+|+..|. .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~------------------------------------~l 53 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFS------------------------------------GF 53 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSST------------------------------------TC
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHc------------------------------------CC
Confidence 356777888888887653 5788888888888888765543 34
Q ss_pred CCccEEEecCCCCCCcc---ccCCCCCccE-EEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCC
Q psy12423 82 GELTSVNLRSNQLKGTI---ILGNYGNLTT-LDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN 154 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~---~l~~l~~L~~-L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~ 154 (567)
++|++|+|++|++.+.. .|.++++|.+ +.+..|+++.++ +..+++|++|++++|++..++
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~------------- 120 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP------------- 120 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------------
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC-------------
Confidence 47788888888876533 4667777654 556667777764 455666777777666665443
Q ss_pred CccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCc-CCcEEECcCCCCCCCChhhhhccCCCccEEECCC-CCCC
Q psy12423 155 NKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSF-NRLT 228 (567)
Q Consensus 155 n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~-~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~ 228 (567)
...+ ..++..|++.+ +.+..++. .|..+. .++.|+|++|+|+.++...|. ..+|++|++++ |.++
T Consensus 121 -------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 121 -------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLE 191 (350)
T ss_dssp -------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCC
T ss_pred -------chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc--ccchhHHhhccCCccc
Confidence 2222 23456666654 46666653 455543 577788888888888877775 56788888864 6777
Q ss_pred CCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEcc-CCcCCCCCCCCcCCccceeecccCCccc
Q psy12423 229 SLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS-KNCLKMLPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 229 ~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls-~N~l~~ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
.+|. .|..+++|++|+|++|+|+.+|...|. +|+.|.+. .+.++.+|+ ...+.+|..+++..+..|
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSHC 259 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHHH
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-chhCcChhhCcCCCCccc
Confidence 7775 467788888888888888888876544 44444433 345777774 556777777777666555
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.2e-20 Score=186.77 Aligned_cols=196 Identities=26% Similarity=0.291 Sum_probs=153.2
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l 157 (567)
+|++|++++|++++.. .+..+++|++|++++|.++.++ +..+++|++|++++|.+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------- 88 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-------------------- 88 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc--------------------
Confidence 6778888888877654 5677778888888888777653 44455555555555554
Q ss_pred ccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCC--CChhhhhccCCCccEEECCCCCCCCCc-
Q psy12423 158 QSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSLP- 231 (567)
Q Consensus 158 ~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~lp- 231 (567)
+.+.+..+ +++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+. . +++|++|+|++|+++.++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~-l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-N-LTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-G-CTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-c-CCCCCEEECCCCCCCcCCH
Confidence 44444333 6799999999999998865 78999999999999999997 455544 3 899999999999999865
Q ss_pred hhhhCCCCCc----EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423 232 SLIRQIASLK----YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 232 ~~~~~l~~L~----~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~ 301 (567)
..+..+++|+ .|++++|.++.+++..+. ..+|+.|+|++|+++.+|... ..+.+|..+++..|.+.+.+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 3565555555 899999999999988764 458999999999999999875 46888988899888887654
No 92
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Probab=99.85 E-value=1.5e-20 Score=178.43 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=111.3
Q ss_pred CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhh----cccccCceeEEEEeec--Ccc
Q psy12423 301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDS----LHRYSLSATLCHLSLH--PVT 374 (567)
Q Consensus 301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~----~~~~~~st~~~~~~~~--~~~ 374 (567)
..++.++||+++..............+.+.......+ ..++..+++.+... ....++++|++.+.+. ..
T Consensus 10 ~~l~~VaDG~GG~~~g~~AS~~~~~~l~~~~~~~~~~----~~~~~~an~~l~~~~~~~~~~~~~GtT~~~~~i~~~~~- 84 (211)
T 3rnr_A 10 KAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSP----LDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDG- 84 (211)
T ss_dssp EEEEEEEEECTTSTTHHHHHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEEEETTTT-
T ss_pred ccEEEEEeCCcCcHHHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHhhccCCCCcchhheeeeeeeCCC-
Confidence 5678899998876665555554444443322211222 34555555555433 2334566776666666 44
Q ss_pred ceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------CCCCCCCCCCCCCccCCCce--EEEEecC
Q psy12423 375 HRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------------LSPPVPPQGSCPLSFPDPHV--TEVMLHE 432 (567)
Q Consensus 375 ~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------------~~r~~g~~~~~~~~~~~p~v--~~~~l~~ 432 (567)
++++||+||||+|++|+|+..+||+||+ ++|++|... .++|++ ..+++.+
T Consensus 85 ---~~~~anvGDSr~yl~r~g~~~~lt~dh~~~~~~~~~g~~~~~~~~~~~ltralG~~~-----~~~~~~~~~~~~l~~ 156 (211)
T 3rnr_A 85 ---TLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGEMITSFIGIEN-----LTEISTSEAPLPLEA 156 (211)
T ss_dssp ---EEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSCCCCSHHHHCBSCCBTCSS-----CCCCEECSSCEECCT
T ss_pred ---EEEEEEEccCeEEEEeCCEEEEECCCcHHHHHHHHcCCChhhCCCccEEecccCCCC-----CcceeEecceecCCC
Confidence 8899999999999999999999999996 478888644 457888 7889998
Q ss_pred CCeEEEEEcCCCC-------------CHHHHHHHHHHHHHHcC--CCCCcEEEEEEe
Q psy12423 433 NDHFLILANKSVS-------------EPVLAAKRIQDLAQSYG--SEDNLSVLVLRF 474 (567)
Q Consensus 433 ~d~~lil~sDGl~-------------~~~~~a~~l~~~a~~~g--~~dnit~~vv~~ 474 (567)
+|.| |||||||| .... |+.|++.|..+| +.|||||+||++
T Consensus 157 gd~l-lL~SDGl~d~~~~~~i~~~l~~~~~-a~~L~~~a~~~g~~~~DNiTvivv~L 211 (211)
T 3rnr_A 157 GEGV-LVVSDGVYRSLHEDRIAMALSRGSD-ARGILQEVEAQGRPYQDNATLALVIL 211 (211)
T ss_dssp TCEE-EEEEC-----CCTTEEEEEECTTSC-HHHHHHHHHHSCTTSCSSCEEEEEEC
T ss_pred CCEE-EEEcCCCCCCcCHHHHHHHHhcCCh-HHHHHHHHHHcCCCCCCceEEEEEeC
Confidence 7655 68999999 1111 999999999999 999999999985
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.3e-21 Score=190.91 Aligned_cols=206 Identities=17% Similarity=0.266 Sum_probs=179.6
Q ss_pred EEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCC
Q psy12423 87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVS 163 (567)
Q Consensus 87 L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~ 163 (567)
+.+..+.+........+++|+.|++++|.++.++ +..+++|++|++++|.+..+. ..+++|+.|++++|.++.++..
T Consensus 24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 103 (308)
T 1h6u_A 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI 103 (308)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGG
T ss_pred HHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhh
Confidence 3455566666556667889999999999999874 778999999999999998876 4678999999999999998654
Q ss_pred CCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243 (567)
Q Consensus 164 ~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 243 (567)
..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +.. +++|+.|+|++|.++.++. +..+++|+.|
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccC-CCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 448999999999999999876 8999999999999999998877 333 8999999999999999887 8899999999
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
++++|.++.+++ +..+++|+.|+|++|+++.+|+ +..+++|..+++..|.+.+.
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence 999999999987 6799999999999999999984 66788888888888877665
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=8.3e-21 Score=187.73 Aligned_cols=175 Identities=26% Similarity=0.364 Sum_probs=111.4
Q ss_pred cCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCC--CCcccEEec
Q psy12423 100 LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDI 174 (567)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~L 174 (567)
...+++|+.|++++|.++.++ +..+++|++|++++|.+..+. ..+++|+.|++++|.++.+++..+ +++|++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 333444444444444444432 344444444444444444332 234455555555555555555443 667777777
Q ss_pred ccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCC
Q psy12423 175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINI 252 (567)
Q Consensus 175 s~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~ 252 (567)
++|.++.++. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|+++.++.. +..+++|++|++++|.++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 7777776654 4677777788888777777777766554 77778888887777776553 5677778888888887777
Q ss_pred CchhhhcCCCCCcEEEccCCcCC
Q psy12423 253 LPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 253 l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+++..+..+++|+.|++++|++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHHHHhCCcCCCEEEccCCCcc
Confidence 77777777777888888877766
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7.7e-21 Score=187.96 Aligned_cols=199 Identities=23% Similarity=0.316 Sum_probs=174.6
Q ss_pred CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423 79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG 153 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~ 153 (567)
..+++|+.|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|.++.++. .+++|+.|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 346789999999999998778889999999999999999875 7889999999999999998763 46899999999
Q ss_pred CCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423 154 NNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230 (567)
Q Consensus 154 ~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l 230 (567)
+|.++.+++..+ +++|++|++++|.++.+|. .+..+++|+.|++++|+++.++...+.. +++|+.|+|++|.++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC-CccCCEEECCCCcCCcc
Confidence 999999888765 8999999999999998865 5789999999999999999999887765 89999999999999997
Q ss_pred ch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCc
Q psy12423 231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFY 285 (567)
Q Consensus 231 p~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~ 285 (567)
+. .+..+++|++|+|++|.+. ..++.|+.|+++.|.++ .+|..+..+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 76 4789999999999999876 34678899999999998 7887665543
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=7e-23 Score=218.03 Aligned_cols=260 Identities=20% Similarity=0.172 Sum_probs=123.8
Q ss_pred CcEEEccCCCCC-----cCCccCCCCCCCCEEeCcCCCCCC-CChhhhccCc----CchhhhhhccchhhccccccccCC
Q psy12423 1 LQEFRVDRNDLT-----EFPGNQDSFPRLKFLSAAQNRISH-LPVFLRHPMS----PLNNVIEHGIAEEREEDFEQDEDG 70 (567)
Q Consensus 1 L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~~L~----~L~~l~~~~~~~~~~~~~~~~~~~ 70 (567)
|++|+|++|.++ .++..+..+++|++|+|++|.++. .+..++..++ .|+.+ +...+.
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L-------------~L~~n~ 96 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL-------------SLQNCC 96 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE-------------ECTTSC
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE-------------EccCCC
Confidence 456666666665 334555566666666666666553 2222333222 23322 111111
Q ss_pred cc-----cccCCCCCCCCccEEEecCCCCCCcc-------ccCCCCCccEEEccCCCCCCCC-------CcccccCcEEE
Q psy12423 71 II-----VERREPEVKGELTSVNLRSNQLKGTI-------ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIK 131 (567)
Q Consensus 71 l~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ 131 (567)
+. ..+..+..+++|++|+|++|.++... .....++|++|++++|.++... +..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 11 22334455667777777777665321 1223455666666666665421 33446666666
Q ss_pred cccCccccee---------cCCCCCcEEEcCCCccccccCC----CC--CCcccEEecccCCCCCc------ccccCCCc
Q psy12423 132 CSRNQLKTLV---------LNGSSLISVIAGNNKLQSLIVS----PR--PARLQHLDISYNELESL------PDWIDTCP 190 (567)
Q Consensus 132 ls~n~l~~l~---------~~~~~L~~L~l~~n~l~~~~~~----~~--~~~L~~L~Ls~n~l~~l------p~~l~~l~ 190 (567)
+++|.+.... ...++|+.|++++|.++..... .+ +++|++|++++|.++.. +..+..++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 6666655321 1234666666666665543211 11 45566666666655421 12223455
Q ss_pred CCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCCC-----chhh-hCCCCCcEEEccCCCCCCCc----h
Q psy12423 191 ELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTSL-----PSLI-RQIASLKYLFLQSNSINILP----Q 255 (567)
Q Consensus 191 ~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~-~~l~~L~~L~Ls~N~l~~l~----~ 255 (567)
+|++|++++|.++. ++..+.. +++|++|+|++|.++.. ...+ ...++|++|++++|.++... +
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRA--KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHH--CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhh--CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 55556665555553 3332221 45555555555554421 1111 11234555555555544321 1
Q ss_pred hhhcCCCCCcEEEccCCcCC
Q psy12423 256 LFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~ 275 (567)
..+..+++|++|++++|+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCH
T ss_pred HHHhhCCCccEEEccCCccc
Confidence 12234455555555555544
No 97
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=99.84 E-value=1.9e-20 Score=180.82 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=125.7
Q ss_pred CcceeeccCCCCc--hhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhccccc--CceeEEEEeecCccce
Q psy12423 301 DALIGIFDSGDNG--DIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYS--LSATLCHLSLHPVTHR 376 (567)
Q Consensus 301 ~~~~~~~dg~~~~--~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~--~st~~~~~~~~~~~~~ 376 (567)
..++.++||+++. ..+......+...+... .. .+++..++..+++.+........ +++|++.+.+.+.
T Consensus 29 ~~~~~V~DG~Gg~G~~as~~~~~~l~~~~~~~----~~-~~~l~~~~~~~~~~l~~~~~~~~~~~gtT~~~~~i~~~--- 100 (234)
T 2jfr_A 29 GILYAVADGFGARGHHASATALKTLSAGFAAA----PD-RDGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEP--- 100 (234)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHS----CS-HHHHHHHHHHHHHHHHHHHTTSSSCCEECEEEEECCCG---
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHHHhcC----Cc-HHHHHHHHHHHHHHHHHhhccCCCCCCccEEEEEEECC---
Confidence 4688999998865 55666666666655433 11 67888999999998876543321 5566665666554
Q ss_pred EE---EEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEEE
Q psy12423 377 YM---LHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEVM 429 (567)
Q Consensus 377 ~~---l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~~ 429 (567)
. ++++|+||||+|++|+|+..+||+||+ ++|++|+.. .++|++..++
T Consensus 101 -~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~~tralG~~~-----~~~~~~~~~~ 174 (234)
T 2jfr_A 101 -GQGGPLVVNIGDSPLYRIRDGHMEQLTDDHSVAGELVRMGEITRHEARWHPQRHLLTRALGIGP-----HIGPDVFGID 174 (234)
T ss_dssp -GGTSCEEEEESSCCEEEEETTEEEECSCCCBHHHHHHHTTSSCHHHHTTCTTTTCBSCCBSSSS-----CCCCEEEECC
T ss_pred -CccEEEEEEEccCceEEEECCEEEEeCCCCCHHHHHHHcCCCCHHHHhcCcccceeeecCcCCC-----CceeEEEEEe
Confidence 5 899999999999999999999999997 367777643 5689999999
Q ss_pred ecCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423 430 LHENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474 (567)
Q Consensus 430 l~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~ 474 (567)
+.++| +||||||||| +|+.+|+.|++.|..+|+.|||||+||++
T Consensus 175 l~~gd-~lll~SDGl~d~~~~~~i~~~~~~~~~~~~a~~l~~~a~~~g~~DniTvivv~~ 233 (234)
T 2jfr_A 175 CGPGD-RLLISSDGLFAAADEALIVDAATSPDPQVAVRRLVEVANDAGGSDNTTVVVIDL 233 (234)
T ss_dssp CCTTC-EEEEECGGGGTTSCHHHHHHHHTCSSHHHHHHHHHHHHHHTTCCSCEEEEEEEE
T ss_pred cCCCC-EEEEECCCCccccCHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCeEEEEEEe
Confidence 99875 5679999999 67889999999999999999999999987
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.6e-20 Score=201.97 Aligned_cols=184 Identities=23% Similarity=0.255 Sum_probs=129.0
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccC
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIV 162 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~ 162 (567)
+|++|+|++|.|+..+ ..+++|+.|++++|.|+.++. -..+|++|++++|+|+.++..+++|+.|++++|.++.++.
T Consensus 81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~ 157 (571)
T 3cvr_A 81 QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE 157 (571)
T ss_dssp TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC
Confidence 5677777777776544 556777777777777776653 2227777777777777766666778888888888877655
Q ss_pred CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCc-------cEEECCCCCCCCCchhhh
Q psy12423 163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKL-------HTLQLSFNRLTSLPSLIR 235 (567)
Q Consensus 163 ~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L-------~~L~Ls~N~l~~lp~~~~ 235 (567)
.+++|++|+|++|.|+.+|. +. ++|+.|+|++|.|+.+|. + ..+| +.|+|++|.|+.+|..+.
T Consensus 158 --~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~----~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 158 --LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V----PVRNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C----C--------CCEEEECCSSCCCCCCGGGG
T ss_pred --cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H----HHhhhcccccceEEecCCCcceecCHHHh
Confidence 56789999999999999888 65 899999999999998888 3 2266 999999999999999888
Q ss_pred CCCCCcEEEccCCCCCCCchhhhcCCCC-------CcEEEccCCcCCCCCC
Q psy12423 236 QIASLKYLFLQSNSINILPQLFLQNSSK-------LKVLNISKNCLKMLPS 279 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~-------L~~L~Ls~N~l~~ip~ 279 (567)
.+++|+.|+|++|.|++..+..+..++. -..+++++|.+..+|.
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeecccccccccc
Confidence 8999999999999998655544443321 1234566666665554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.3e-20 Score=201.10 Aligned_cols=177 Identities=26% Similarity=0.316 Sum_probs=155.0
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccC
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIV 162 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~ 162 (567)
+|+.|+|++|.+++.+. .-+++|++|++++|.|+.++ ..+++|++|++++|+|+.++.-..+|+.|++++|.++.++.
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~ 137 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE 137 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC
Confidence 79999999999988552 12478999999999999988 78899999999999999877622399999999999999776
Q ss_pred CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC--
Q psy12423 163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL-- 240 (567)
Q Consensus 163 ~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L-- 240 (567)
.+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+.+|. + .++|+.|+|++|.|+.+|. +.. +|
T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l---~~~L~~L~Ls~N~L~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 138 --LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--L---PESLEALDVSTNLLESLPA-VPV--RNHH 204 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSSCCC-CC-------
T ss_pred --cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--h---hCCCCEEECcCCCCCchhh-HHH--hhhc
Confidence 68899999999999999987 57899999999999999998 3 3799999999999999988 543 77
Q ss_pred -----cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 241 -----KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 241 -----~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+.|+|++|.|+.+|..++ .+++|+.|+|++|+|+
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCC
T ss_pred ccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCC
Confidence 999999999999999876 4999999999999997
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.9e-20 Score=180.03 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=162.6
Q ss_pred CCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEE
Q psy12423 8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSV 87 (567)
Q Consensus 8 ~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 87 (567)
.+.++++|. +. ++|++|+|++|+|+.+|+..+. .+++|++|
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~------------------------------------~l~~L~~L 60 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFS------------------------------------NLPNISRI 60 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTT------------------------------------TCTTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHcc------------------------------------CCCCCcEE
Confidence 334788887 44 3899999999999988765432 34578888
Q ss_pred EecCCC-CCCcc--ccCCCCCccEEEccC-CCCCCCC---CcccccCcEEEcccCccccee--cCCCCCc---EEEcCCC
Q psy12423 88 NLRSNQ-LKGTI--ILGNYGNLTTLDVSE-NSIESLD---LGALNRLESIKCSRNQLKTLV--LNGSSLI---SVIAGNN 155 (567)
Q Consensus 88 ~Ls~n~-l~~~~--~l~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~~L~ls~n~l~~l~--~~~~~L~---~L~l~~n 155 (567)
++++|. ++... .+.++++|++|++++ |.++.++ +..+++|++|++++|.++.++ ..+++|+ .|++++|
T Consensus 61 ~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 61 YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESC
T ss_pred eCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCC
Confidence 999986 77655 577888999999988 8888764 557888999999999888766 3456666 9999999
Q ss_pred -ccccccCCCC--CCccc-EEecccCCCCCcccccCCCcCCcEEECcCCC-CCCCChhhhhccC-CCccEEECCCCCCCC
Q psy12423 156 -KLQSLIVSPR--PARLQ-HLDISYNELESLPDWIDTCPELETIFASHNR-ITQLPSQFFCREL-GKLHTLQLSFNRLTS 229 (567)
Q Consensus 156 -~l~~~~~~~~--~~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l-~~L~~L~Ls~N~l~~ 229 (567)
.++.+++..+ +++|+ +|++++|.++.+|......++|+.|++++|+ ++.++...|.. + ++|+.|+|++|+++.
T Consensus 141 ~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~-l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-VYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT-CSBCCSEEECTTCCCCC
T ss_pred cchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc-cccCCcEEECCCCcccc
Confidence 8988887766 88999 9999999999988754444899999999995 99998888776 7 899999999999999
Q ss_pred CchhhhCCCCCcEEEccCC
Q psy12423 230 LPSLIRQIASLKYLFLQSN 248 (567)
Q Consensus 230 lp~~~~~l~~L~~L~Ls~N 248 (567)
+|.. .+++|+.|+++++
T Consensus 220 l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCT--TCTTCSEEECTTC
T ss_pred CChh--HhccCceeeccCc
Confidence 9875 6889999999886
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.4e-19 Score=176.60 Aligned_cols=173 Identities=25% Similarity=0.389 Sum_probs=113.1
Q ss_pred CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~ 159 (567)
..++++++++.++..+. .-.++|+.|++++|.++.+. +..+++ |+.|++++|.++.
T Consensus 15 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~--------------------L~~L~L~~n~l~~ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTK--------------------LTWLNLDYNQLQT 73 (251)
T ss_dssp GGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------CCEEECTTSCCCC
T ss_pred CCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCccc--------------------CCEEECCCCcCCc
Confidence 34556666665554431 11145555666655555542 333334 4444444444444
Q ss_pred ccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhh
Q psy12423 160 LIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIR 235 (567)
Q Consensus 160 ~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~ 235 (567)
+.+..+ +++|++|+|++|.++.+| ..|..+++|++|+|++|.|+.++...+.. +++|++|+|++|+|+.+|. .+.
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-CCcccEEECcCCcCCccCHHHcC
Confidence 444333 567777888888777665 35677778888888888888777776654 7788888888888877766 567
Q ss_pred CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC
Q psy12423 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i 277 (567)
.+++|++|+|++|.|+.+++..|..+++|+.|+|++|+++.-
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888888888888877777777778888888888877644
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=190.84 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=113.3
Q ss_pred CccEEEecCCCCCCcc-----ccCCCCCccEEEccCCCCCCCC---C--cccccCcEEEcccCccccee--------cCC
Q psy12423 83 ELTSVNLRSNQLKGTI-----ILGNYGNLTTLDVSENSIESLD---L--GALNRLESIKCSRNQLKTLV--------LNG 144 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~n~l~~~~---~--~~l~~L~~L~ls~n~l~~l~--------~~~ 144 (567)
.++.|.+.++.+.... .+..+++|++|++++|.+.... + ..+++|++|++++|.+.... ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3455555555443211 1122344556666665555421 2 44555666666666555321 124
Q ss_pred CCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCC---cc--cccCCCcCCcEEECcCCCCCCCChh---hhhccC
Q psy12423 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELES---LP--DWIDTCPELETIFASHNRITQLPSQ---FFCREL 214 (567)
Q Consensus 145 ~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~---lp--~~l~~l~~L~~L~Ls~N~l~~l~~~---~~~~~l 214 (567)
++|+.|++++|.++..++..+ +++|++|+|++|++.. ++ .++..+++|++|+|++|+++.++.. ++.. +
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-G 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-T
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-C
Confidence 556666666666655555444 5666666666666542 22 2235566666666666666544432 2222 5
Q ss_pred CCccEEECCCCCCCCC-chhhhCC---CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceee
Q psy12423 215 GKLHTLQLSFNRLTSL-PSLIRQI---ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290 (567)
Q Consensus 215 ~~L~~L~Ls~N~l~~l-p~~~~~l---~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~ 290 (567)
++|++|+|++|.++.+ |..+..+ ++|++|+|++|+|+.+|..++ ++|+.|+|++|+|+.+|. ...++.|..+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 6666666666666654 5444443 466666666666666665442 566666666666666554 3445555555
Q ss_pred cccCCccc
Q psy12423 291 QLRLPGFC 298 (567)
Q Consensus 291 ~l~~~~~~ 298 (567)
++..|.+.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 55555443
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=4.8e-21 Score=197.59 Aligned_cols=241 Identities=17% Similarity=0.165 Sum_probs=172.5
Q ss_pred EEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423 3 EFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK 81 (567)
Q Consensus 3 ~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 81 (567)
++.|+.|.++.. |..+...++|++|+|++|.|+.++..... ..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--------------------------------~~l~~~ 49 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI--------------------------------QAFANT 49 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH--------------------------------HHHHTC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH--------------------------------HHHHhC
Confidence 578999999954 55566666799999999999987752210 001234
Q ss_pred C-CccEEEecCCCCCCcc--ccCCC-----CCccEEEccCCCCCCCC-------Cccc-ccCcEEEcccCcccceec---
Q psy12423 82 G-ELTSVNLRSNQLKGTI--ILGNY-----GNLTTLDVSENSIESLD-------LGAL-NRLESIKCSRNQLKTLVL--- 142 (567)
Q Consensus 82 ~-~L~~L~Ls~n~l~~~~--~l~~l-----~~L~~L~L~~n~l~~~~-------~~~l-~~L~~L~ls~n~l~~l~~--- 142 (567)
+ +|++|+|++|.++... .+..+ ++|++|++++|.++... +..+ ++|++|++++|.++....
T Consensus 50 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 4 7999999999998754 33332 89999999999998754 3334 789999999999887652
Q ss_pred -----C-CCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCCcc-c----ccCCC-cCCcEEECcCCCCC
Q psy12423 143 -----N-GSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELESLP-D----WIDTC-PELETIFASHNRIT 203 (567)
Q Consensus 143 -----~-~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~lp-~----~l~~l-~~L~~L~Ls~N~l~ 203 (567)
. ..+|+.|++++|.++......+ ..+|++|+|++|.++... . .+..+ ++|++|+|++|.|+
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 1 3588888988888875443322 248888888888887443 2 34445 48888888888888
Q ss_pred C-----CChhhhhccCCCccEEECCCCCCCCCch-----hhhCCCCCcEEEccCCCCCCCchh-------hhcCCCCCcE
Q psy12423 204 Q-----LPSQFFCRELGKLHTLQLSFNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQL-------FLQNSSKLKV 266 (567)
Q Consensus 204 ~-----l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~~~~l~~L~~L~Ls~N~l~~l~~~-------~l~~l~~L~~ 266 (567)
. ++..+... .++|++|+|++|.|+..+. .+..+++|+.|+|++|.+..+... .+..+++|+.
T Consensus 210 ~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 210 LKSYAELAYIFSSI-PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp GSCHHHHHHHHHHS-CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred hhHHHHHHHHHhcC-CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 6 44444331 3588888888888887543 346778888888888886655543 3456778888
Q ss_pred EEccCCcCCC
Q psy12423 267 LNISKNCLKM 276 (567)
Q Consensus 267 L~Ls~N~l~~ 276 (567)
||+++|++..
T Consensus 289 LdL~~N~l~~ 298 (362)
T 3goz_A 289 VDKNGKEIHP 298 (362)
T ss_dssp ECTTSCBCCG
T ss_pred EecCCCcCCC
Confidence 8888888763
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.9e-21 Score=202.40 Aligned_cols=231 Identities=19% Similarity=0.164 Sum_probs=177.4
Q ss_pred cCCccCCCCCCCCEEeCcCCCCCCCC-hhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecC
Q psy12423 13 EFPGNQDSFPRLKFLSAAQNRISHLP-VFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRS 91 (567)
Q Consensus 13 ~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~ 91 (567)
.++..+..+++|++|+|++|.|+... ..+. ..+..+++|++|+|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------------------~~l~~~~~L~~L~Ls~ 69 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLS---------------------------------ENIASKKDLEIAEFSD 69 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHH---------------------------------HTTTTCTTCCEEECCS
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHH---------------------------------HHHHhCCCccEEeCcc
Confidence 56667788899999999999888532 2221 1223456899999999
Q ss_pred CCCCCcc------------ccCCCCCccEEEccCCCCCCC-------CCcccccCcEEEcccCccccee----c----CC
Q psy12423 92 NQLKGTI------------ILGNYGNLTTLDVSENSIESL-------DLGALNRLESIKCSRNQLKTLV----L----NG 144 (567)
Q Consensus 92 n~l~~~~------------~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~ls~n~l~~l~----~----~~ 144 (567)
|.+.... .+..+++|++|+|++|.+... .+..+++|++|++++|.+.... . .+
T Consensus 70 ~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l 149 (386)
T 2ca6_A 70 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149 (386)
T ss_dssp CCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred cccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence 7655321 246789999999999998873 2567889999999999886432 1 12
Q ss_pred ---------CCCcEEEcCCCccccccCCC----C--CCcccEEecccCCCC------CcccccCCCcCCcEEECcCCCCC
Q psy12423 145 ---------SSLISVIAGNNKLQSLIVSP----R--PARLQHLDISYNELE------SLPDWIDTCPELETIFASHNRIT 203 (567)
Q Consensus 145 ---------~~L~~L~l~~n~l~~~~~~~----~--~~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~Ls~N~l~ 203 (567)
++|+.|++++|.++...... + +++|++|+|++|.++ -+|..+..+++|+.|+|++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 79999999999987433221 1 679999999999998 23447889999999999999994
Q ss_pred -----CCChhhhhccCCCccEEECCCCCCCC-----CchhhhC--CCCCcEEEccCCCCCC-----CchhhhcCCCCCcE
Q psy12423 204 -----QLPSQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQ--IASLKYLFLQSNSINI-----LPQLFLQNSSKLKV 266 (567)
Q Consensus 204 -----~l~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~--l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~ 266 (567)
.++..+.. +++|++|+|++|.|+. ++..+.. +++|+.|+|++|.|+. +|..++.++++|+.
T Consensus 230 ~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 230 HLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp HHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred cHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 45554443 8899999999999986 3566643 8999999999999997 77777677899999
Q ss_pred EEccCCcCCCCC
Q psy12423 267 LNISKNCLKMLP 278 (567)
Q Consensus 267 L~Ls~N~l~~ip 278 (567)
|++++|+++..+
T Consensus 308 L~l~~N~l~~~~ 319 (386)
T 2ca6_A 308 LELNGNRFSEED 319 (386)
T ss_dssp EECTTSBSCTTS
T ss_pred EEccCCcCCcch
Confidence 999999998555
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.8e-20 Score=189.90 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=147.6
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC-CC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES-LD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK 156 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~ 156 (567)
++++|+|++|+|+.+. .|.++++|++|+|++|++.. ++ +..++++.+ .+.+..|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~-------------------~l~~~~N~ 91 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE-------------------IRIEKANN 91 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE-------------------EEEEEETT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh-------------------hhcccCCc
Confidence 6778888888887655 47778888888888887644 33 333444332 23334455
Q ss_pred cccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcC-CCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423 157 LQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 157 l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 232 (567)
++.+++..+ +++|++|++++|.++.+|. .+....++..|++.+ +.+..++...|......++.|+|++|+|+.+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 555555554 7899999999999998875 455677888999966 689999888776523579999999999999988
Q ss_pred hhhCCCCCcEEEccC-CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeeccc
Q psy12423 233 LIRQIASLKYLFLQS-NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLR 293 (567)
Q Consensus 233 ~~~~l~~L~~L~Ls~-N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~ 293 (567)
......+|+.|++.+ |.++.+|..+|..+++|++|+|++|+|+.+|... .++.+|+...+.
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC
Confidence 776778899999975 7899999999999999999999999999999764 367777766553
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.4e-22 Score=215.64 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=205.6
Q ss_pred CcEEEccCCCCCcCC--ccCCCCCCCCEEeCcCCCCCC-----CChhhhccCcCchhhhhhccchhhccccccccCC--c
Q psy12423 1 LQEFRVDRNDLTEFP--GNQDSFPRLKFLSAAQNRISH-----LPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDG--I 71 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~Ls~n~i~~-----lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~--l 71 (567)
|++|+|++|.++..+ ..+..+++|++|+|++|.++. ++.. +..++.|+.+ ++..+.... .
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L----------~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL----------NLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEE----------ECTTCCCHHHHH
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEE----------eCCCCcCChHHH
Confidence 578999999998553 347889999999999999884 2322 2344555544 111111110 1
Q ss_pred ccccCCCC-CCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCC--------CcccccCcEEEcccCc
Q psy12423 72 IVERREPE-VKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLD--------LGALNRLESIKCSRNQ 136 (567)
Q Consensus 72 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~--------~~~l~~L~~L~ls~n~ 136 (567)
......+. ..++|++|+|++|+++... .+..+++|++|++++|.++... ....++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 11111111 1227999999999998521 5788999999999999987532 2234579999999999
Q ss_pred cccee--------cCCCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCC-----cccccCCCcCCcEEE
Q psy12423 137 LKTLV--------LNGSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELES-----LPDWIDTCPELETIF 196 (567)
Q Consensus 137 l~~l~--------~~~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~ 196 (567)
++... ..+++|+.|++++|.++......+ .++|++|++++|.++. ++..+..+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 88632 246899999999999877554433 3489999999999986 577788899999999
Q ss_pred CcCCCCCCCC-----hhhhhccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchhh-----hcCC
Q psy12423 197 ASHNRITQLP-----SQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQLF-----LQNS 261 (567)
Q Consensus 197 Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~~-----l~~l 261 (567)
+++|.++... ..++.. +++|++|+|++|.++. ++..+..+++|++|+|++|.++...... ....
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred ccCCcCChHHHHHHHHHHhcC-CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 9999987532 333323 7899999999999997 6777888999999999999998543332 2344
Q ss_pred CCCcEEEccCCcCCC-----CCCCCcCCccceeecccCCccc
Q psy12423 262 SKLKVLNISKNCLKM-----LPSLQKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 262 ~~L~~L~Ls~N~l~~-----ip~~~~~~~~L~~~~l~~~~~~ 298 (567)
++|+.|++++|.++. +|..+..++.|..+++..|.+.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 799999999999984 3444445566777777666554
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=186.05 Aligned_cols=192 Identities=19% Similarity=0.182 Sum_probs=160.4
Q ss_pred CCCccEEEecCCCCCCcc--cc--CCCCCccEEEccCCCCCCC-------CCcccccCcEEEcccCcccceec----CCC
Q psy12423 81 KGELTSVNLRSNQLKGTI--IL--GNYGNLTTLDVSENSIESL-------DLGALNRLESIKCSRNQLKTLVL----NGS 145 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~--~l--~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~ls~n~l~~l~~----~~~ 145 (567)
+++|++|++++|.+.+.. .+ ..+++|++|++++|.++.. .+..+++|++|++++|.+..++. .++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 457999999999998755 34 7899999999999999873 24568999999999999987763 578
Q ss_pred CCcEEEcCCCcccc---ccCCC---CCCcccEEecccCCCCCccc----ccCCCcCCcEEECcCCCCCCC-Chhhhhc-c
Q psy12423 146 SLISVIAGNNKLQS---LIVSP---RPARLQHLDISYNELESLPD----WIDTCPELETIFASHNRITQL-PSQFFCR-E 213 (567)
Q Consensus 146 ~L~~L~l~~n~l~~---~~~~~---~~~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~N~l~~l-~~~~~~~-~ 213 (567)
+|+.|++++|++.+ +.... .+++|++|+|++|.++.++. .+..+++|++|+|++|.++.+ |..+..- .
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999999765 32222 27899999999999997765 357889999999999999976 5554331 0
Q ss_pred CCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 214 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
+++|++|+|++|+|+.+|..+. ++|++|+|++|+|+++|. +..+++|+.|+|++|+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 3799999999999999998764 899999999999999876 5789999999999999873
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.4e-21 Score=200.39 Aligned_cols=243 Identities=20% Similarity=0.202 Sum_probs=184.0
Q ss_pred CcEEEccCCCCCc-----CCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc
Q psy12423 1 LQEFRVDRNDLTE-----FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER 75 (567)
Q Consensus 1 L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~ 75 (567)
|++|+|++|.|+. ++..|..+++|++|+|++|.+..+...++..+..|.
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~-------------------------- 87 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-------------------------- 87 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH--------------------------
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH--------------------------
Confidence 6899999999984 455688999999999999987766544332222211
Q ss_pred CCCCCCCCccEEEecCCCCCCc----c--ccCCCCCccEEEccCCCCCCCC-------Cccc---------ccCcEEEcc
Q psy12423 76 REPEVKGELTSVNLRSNQLKGT----I--ILGNYGNLTTLDVSENSIESLD-------LGAL---------NRLESIKCS 133 (567)
Q Consensus 76 ~~~~~l~~L~~L~Ls~n~l~~~----~--~l~~l~~L~~L~L~~n~l~~~~-------~~~l---------~~L~~L~ls 133 (567)
..+..+++|++|+|++|.++.. . .+..+++|++|+|++|.++... +..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 1124567999999999999873 2 5678899999999999997431 2333 899999999
Q ss_pred cCcccc--ee------cCCCCCcEEEcCCCccccc-----cC--CCCCCcccEEecccCCC-----CCcccccCCCcCCc
Q psy12423 134 RNQLKT--LV------LNGSSLISVIAGNNKLQSL-----IV--SPRPARLQHLDISYNEL-----ESLPDWIDTCPELE 193 (567)
Q Consensus 134 ~n~l~~--l~------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~~L~~L~Ls~n~l-----~~lp~~l~~l~~L~ 193 (567)
+|.+.. ++ ..+++|+.|++++|.++.. .+ ...+++|++|+|++|.+ ..+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 999972 22 2578999999999999832 22 12278999999999999 46788899999999
Q ss_pred EEECcCCCCCCC-----ChhhhhccCCCccEEECCCCCCCC-----Cchhh-hCCCCCcEEEccCCCCCCCch---hhhc
Q psy12423 194 TIFASHNRITQL-----PSQFFCRELGKLHTLQLSFNRLTS-----LPSLI-RQIASLKYLFLQSNSINILPQ---LFLQ 259 (567)
Q Consensus 194 ~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~l~~---~~l~ 259 (567)
.|+|++|.|+.. +..+....+++|+.|+|++|.|+. +|..+ ..+++|++|+|++|.++...+ .+..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 999999999854 333321227899999999999997 88877 668999999999999997763 3333
Q ss_pred CCCCCcEEEc
Q psy12423 260 NSSKLKVLNI 269 (567)
Q Consensus 260 ~l~~L~~L~L 269 (567)
.+++++.+++
T Consensus 328 ~l~~~~~~~l 337 (386)
T 2ca6_A 328 VFSTRGRGEL 337 (386)
T ss_dssp HHHHHTCCEE
T ss_pred HhhhcCcchh
Confidence 3444443333
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.3e-18 Score=169.81 Aligned_cols=174 Identities=25% Similarity=0.316 Sum_probs=145.3
Q ss_pred cCcEEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCC
Q psy12423 126 RLESIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201 (567)
Q Consensus 126 ~L~~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~ 201 (567)
..+.++++++.++.++.. ..+++.|++++|.++.+.+..+ +++|++|+|++|.++.++ ..|..+++|++|+|++|.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 345556666655555532 2456677777777777766555 789999999999999875 468999999999999999
Q ss_pred CCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 202 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
++.++...+.. +++|++|+|++|.|+.+|.. +..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|+.
T Consensus 95 l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99999888776 99999999999999998874 68899999999999999999998889999999999999999999874
Q ss_pred -CcCCccceeecccCCccccC
Q psy12423 281 -QKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 281 -~~~~~~L~~~~l~~~~~~~~ 300 (567)
+..+.+|..+++..|.+.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 45788898888888887654
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5e-19 Score=176.71 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=126.5
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~ 159 (567)
+++|+.|++++|.+.....+..+++|++|++++|.++.++ +..+ ++|+.|++++|.++.
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l--------------------~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL--------------------KNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTC--------------------TTCCEEECCSSCCCC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccC--------------------CCCCEEECCCCcCCC
Confidence 4455555555555554444555555555555555555442 3444 445555555555555
Q ss_pred ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423 160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239 (567)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 239 (567)
++....+++|++|++++|.++.++ .+..+++|+.|++++|.++.++ . +.. +++|+.|+|++|.++.++. +..+++
T Consensus 105 ~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~-l~~L~~L~L~~N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-V-LSR-LTKLDTLSLEDNQISDIVP-LAGLTK 179 (291)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-G-GGG-CTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-h-hcc-CCCCCEEEccCCccccchh-hcCCCc
Confidence 444333778999999999999875 5788999999999999999883 3 333 8999999999999999877 889999
Q ss_pred CcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 240 L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
|+.|+|++|.|+.++. +..+++|+.|++++|+++..|.
T Consensus 180 L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred cCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCcc
Confidence 9999999999999875 6789999999999999987764
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=7.9e-20 Score=188.43 Aligned_cols=219 Identities=19% Similarity=0.180 Sum_probs=172.6
Q ss_pred CCccEEEecCCCCCCcc------ccCCCC-CccEEEccCCCCCCCC---Cccc-----ccCcEEEcccCcccceec----
Q psy12423 82 GELTSVNLRSNQLKGTI------ILGNYG-NLTTLDVSENSIESLD---LGAL-----NRLESIKCSRNQLKTLVL---- 142 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~------~l~~l~-~L~~L~L~~n~l~~~~---~~~l-----~~L~~L~ls~n~l~~l~~---- 142 (567)
++|++|+|++|.++... .+..++ +|++|++++|.++... +..+ ++|++|++++|.++....
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46999999999998754 467788 8999999999998864 3333 899999999999986542
Q ss_pred ----CC-CCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCC-----CcccccCCCc-CCcEEECcCCCCCC
Q psy12423 143 ----NG-SSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELE-----SLPDWIDTCP-ELETIFASHNRITQ 204 (567)
Q Consensus 143 ----~~-~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~N~l~~ 204 (567)
.. ++|+.|++++|.++......+ +.+|++|+|++|.++ .++..+..++ +|++|+|++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 23 799999999999988776443 359999999999998 3455566665 99999999999997
Q ss_pred CChhhhhc---cC-CCccEEECCCCCCCC-----CchhhhC-CCCCcEEEccCCCCCCCch----hhhcCCCCCcEEEcc
Q psy12423 205 LPSQFFCR---EL-GKLHTLQLSFNRLTS-----LPSLIRQ-IASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNIS 270 (567)
Q Consensus 205 l~~~~~~~---~l-~~L~~L~Ls~N~l~~-----lp~~~~~-l~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls 270 (567)
.....+.. .. ++|++|+|++|.|+. ++..+.. .++|++|+|++|.|+..+. ..+..+++|+.|+|+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 76533221 14 599999999999997 6666665 4699999999999998776 345678999999999
Q ss_pred CCcCCCCC--------CCCcCCccceeecccCCccccC
Q psy12423 271 KNCLKMLP--------SLQKGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 271 ~N~l~~ip--------~~~~~~~~L~~~~l~~~~~~~~ 300 (567)
+|.+..++ ..+..+..|..+++..|.+.+.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99965444 3455677788888887765543
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.7e-18 Score=171.40 Aligned_cols=156 Identities=24% Similarity=0.286 Sum_probs=128.9
Q ss_pred CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423 77 EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN 155 (567)
Q Consensus 77 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n 155 (567)
.+..+++|++|++++|++++...+..+++|++|++++|.++.++ +..+++|++|++++|++..+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--------------- 127 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--------------- 127 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---------------
T ss_pred hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC---------------
Confidence 36678999999999999998878999999999999999998864 66677777777777766543
Q ss_pred ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423 156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235 (567)
Q Consensus 156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 235 (567)
.....+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +.. +++|+.|+|++|.|+.++. +.
T Consensus 128 -----~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L~~L~L~~N~i~~l~~-l~ 197 (291)
T 1h6t_A 128 -----NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNLYLSKNHISDLRA-LA 197 (291)
T ss_dssp -----GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCBCGG-GT
T ss_pred -----hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcC-CCccCEEECCCCcCCCChh-hc
Confidence 2112256899999999999888 468889999999999999998876 333 8999999999999999875 88
Q ss_pred CCCCCcEEEccCCCCCCCchhh
Q psy12423 236 QIASLKYLFLQSNSINILPQLF 257 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~ 257 (567)
.+++|+.|++++|.++..|...
T Consensus 198 ~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 198 GLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp TCTTCSEEEEEEEEEECCCEEC
T ss_pred cCCCCCEEECcCCcccCCcccc
Confidence 8999999999999998877543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.6e-18 Score=189.77 Aligned_cols=173 Identities=22% Similarity=0.323 Sum_probs=107.9
Q ss_pred CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccc
Q psy12423 80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~ 158 (567)
.+++|+.|++++|.+.....+..+++|+.|+|++|.+..++ +..+++|+.|+|++|.+ +
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--------------------~ 100 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--------------------K 100 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--------------------C
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC--------------------C
Confidence 34556666666666655555555666666666666665543 45555555555555554 4
Q ss_pred cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCC
Q psy12423 159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238 (567)
Q Consensus 159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 238 (567)
.++....+++|+.|+|++|.+..++ .+..+++|+.|+|++|.|+.++ . +.. +++|+.|+|++|.|+.++. +..++
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~-l~~-l~~L~~L~Ls~N~l~~~~~-l~~l~ 175 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-V-LSR-LTKLDTLSLEDNQISDIVP-LAGLT 175 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-G-GGS-CTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-h-hcc-cCCCCEEECcCCcCCCchh-hccCC
Confidence 4332223566777777777777664 3666777777777777777662 2 222 6777777777777777655 66777
Q ss_pred CCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 239 ~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
+|+.|+|++|.|+.++. +..+++|+.|+|++|++...|.
T Consensus 176 ~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEEECCCC
T ss_pred CCCEEECcCCCCCCChH--HccCCCCCEEEccCCcCcCCcc
Confidence 77777777777777643 4667777777777777765543
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.4e-19 Score=184.29 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=110.0
Q ss_pred CCCccEEEecCCCCCCc-c--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccC-cccc--e---ecCCCCCc
Q psy12423 81 KGELTSVNLRSNQLKGT-I--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN-QLKT--L---VLNGSSLI 148 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n-~l~~--l---~~~~~~L~ 148 (567)
+++|++|++++|.+... . .+..+++|++|++++|.++.. .+..+++|++|++++| .++. + ...+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 45677777777776643 1 456677777777777776642 2455677777777777 4553 1 23456677
Q ss_pred EEEcCCC-ccccccCCC-C--CC-cccEEecccCC--CC--CcccccCCCcCCcEEECcCCC-CC-CCChhhhhccCCCc
Q psy12423 149 SVIAGNN-KLQSLIVSP-R--PA-RLQHLDISYNE--LE--SLPDWIDTCPELETIFASHNR-IT-QLPSQFFCRELGKL 217 (567)
Q Consensus 149 ~L~l~~n-~l~~~~~~~-~--~~-~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~N~-l~-~l~~~~~~~~l~~L 217 (567)
.|++++| .+++..... + ++ +|++|++++|. ++ .+|..+..+++|+.|++++|. ++ ..+..+ .. +++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~-l~~L 249 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQ-LNYL 249 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GG-CTTC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hC-CCCC
Confidence 7777776 665432111 1 55 67777777773 33 445556666777777777776 44 233333 22 6677
Q ss_pred cEEECCCCC-CCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCC-CCCcEEEccCCcCCCCCC
Q psy12423 218 HTLQLSFNR-LTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNS-SKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 218 ~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l-~~L~~L~Ls~N~l~~ip~ 279 (567)
++|+|++|. +.. ....+..+++|+.|++++| ++ ...+..+ ..|..|++++|+++.+.+
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccC
Confidence 777777764 221 0113556677777777776 33 2222222 124445567777764433
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.2e-17 Score=158.77 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=105.4
Q ss_pred cEEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCC
Q psy12423 128 ESIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRIT 203 (567)
Q Consensus 128 ~~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~ 203 (567)
+.++++++.+..++.. .++|+.|++++|.++.+.+..+ +++|++|+|++|.|+.+|. .|..+++|+.|+|++|+|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3344444444444321 2345555555555555544444 6778888888888887764 5677888888888888888
Q ss_pred CCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 204 QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 204 ~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
.++...|.. +++|++|+|++|+|+.+|..+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|++..
T Consensus 102 ~l~~~~~~~-l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 102 VLPSAVFDR-LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCTTTTTT-CTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccChhHhCc-chhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 887776655 788888888888888888877888888888888888888887777788888888888887763
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.7e-17 Score=158.45 Aligned_cols=146 Identities=20% Similarity=0.338 Sum_probs=78.4
Q ss_pred EEEcccCcccceecCC-CCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCC
Q psy12423 129 SIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQ 204 (567)
Q Consensus 129 ~L~ls~n~l~~l~~~~-~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~ 204 (567)
.++++++.++.++... ++++.|++++|.++.+++..+ +++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 3444444444443221 234444444444444443333 45566666666666544 4455566666666666666666
Q ss_pred CChhhhhccCCCccEEECCCCCCCCCc-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 205 LPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 205 l~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+|...|.. +++|++|+|++|.|+.++ ..+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|++.
T Consensus 95 l~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 95 LPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCHhHccC-CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66555544 556666666666666542 34555566666666666666665555555566666666665543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.8e-18 Score=173.00 Aligned_cols=137 Identities=26% Similarity=0.286 Sum_probs=99.4
Q ss_pred CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L 243 (567)
+++|++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++...|.. +++|+.|+|++|.|+.+ |..+..+++|+.|
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 467778888888887765 46778888888888888888777776665 78888888888888875 4567788888888
Q ss_pred EccCCCCCCCchhhh---cCCCCCcEEEccCCcCCCCCCC-CcCCcc--ceeecccCCccccCCcc
Q psy12423 244 FLQSNSINILPQLFL---QNSSKLKVLNISKNCLKMLPSL-QKGFYL--LNISQLRLPGFCNSDAL 303 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l---~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~--L~~~~l~~~~~~~~~~~ 303 (567)
+|++|.|+.+|..+| ..+++|+.|+|++|+|+.+|.. +..+.. +..+.+..|.+.|.|.+
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 888888888888776 5678888888888888888743 223433 24456666666655443
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.8e-18 Score=184.78 Aligned_cols=195 Identities=20% Similarity=0.235 Sum_probs=135.2
Q ss_pred CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCccccC
Q psy12423 22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG 101 (567)
Q Consensus 22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~ 101 (567)
..+..+.+..+.+..+... ..|+.|+.+ ....+.+... ..+..+++|+.|+|++|++.+...+.
T Consensus 21 ~~l~~l~l~~~~i~~~~~~--~~L~~L~~L-------------~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~ 84 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ--NELNSIDQI-------------IANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLT 84 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH--HHHTTCCCC-------------BCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGG
T ss_pred HHHHHHhccCCCcccccch--hcCCCCCEE-------------ECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChhhc
Confidence 3455667777777764432 234444433 2222222222 24677899999999999999988899
Q ss_pred CCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCC
Q psy12423 102 NYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~ 180 (567)
.+++|+.|+|++|.+..++ +..+++|+.|+|++|.+..+. ....+++|+.|+|++|.++
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--------------------~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--------------------GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp GCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG--------------------GGGGCTTCSEEECCSSCCC
T ss_pred cCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc--------------------cccCCCccCEEECCCCccC
Confidence 9999999999999999874 667777877777777766532 1112556777777777777
Q ss_pred CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhh
Q psy12423 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF 257 (567)
Q Consensus 181 ~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~ 257 (567)
.+ ..+..+++|+.|+|++|.|+.+++ +.. +++|+.|+|++|.|+.+| .+..+++|+.|+|++|.+...|...
T Consensus 145 ~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 145 DI-TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CC-GGGGSCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred Cc-hhhcccCCCCEEECcCCcCCCchh--hcc-CCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccc
Confidence 66 456777777777777777777655 332 777777778777777774 4677777888888877777666543
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.3e-18 Score=162.03 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=136.9
Q ss_pred CcEEEcCCCccccccCCCCCCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225 (567)
Q Consensus 147 L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 225 (567)
-+.++++++.++.++.. ++++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+.+++..|.. +++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCC
Confidence 35788999999988653 45799999999999998865 7899999999999999999887777766 999999999999
Q ss_pred CCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCcc
Q psy12423 226 RLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 226 ~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~~ 303 (567)
.|+.+|.. +..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|+. +..+.+|..+++..|.|.+.+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999875 68899999999999999999998899999999999999999999876 45688898899999888766544
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=3.3e-17 Score=154.94 Aligned_cols=109 Identities=27% Similarity=0.422 Sum_probs=60.9
Q ss_pred CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L 243 (567)
+++|++|+|++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|.++.++.. +..+++|++|
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 4556666666666655543 3455566666666666666555554443 55666666666666655443 4555666666
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCc
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQK 282 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~ 282 (567)
++++|.+. ..+++|+.|+++.|+++ .+|..+.
T Consensus 154 ~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 154 WLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EecCCCee-------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 66666443 23445555666666655 5554433
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1e-17 Score=172.45 Aligned_cols=169 Identities=24% Similarity=0.289 Sum_probs=146.7
Q ss_pred ccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-----CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCC
Q psy12423 106 LTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-----NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNE 178 (567)
Q Consensus 106 L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-----~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~ 178 (567)
-+.++++++.++.++..-...++.|++++|+|+.++. .+++|+.|++++|.++.+.+..+ +++|++|+|++|.
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4689999999999886666789999999999998763 67899999999999999987766 8899999999999
Q ss_pred CCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh----hCCCCCcEEEccCCCCCCC
Q psy12423 179 LESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI----RQIASLKYLFLQSNSINIL 253 (567)
Q Consensus 179 l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N~l~~l 253 (567)
|+.++. .|..+++|+.|+|++|.|+.++...|.. +++|+.|+|++|.|+.+|..+ ..+++|+.|+|++|.|+.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 998864 6889999999999999999887777766 899999999999999998764 5789999999999999999
Q ss_pred chhhhcCCCC--CcEEEccCCcCC
Q psy12423 254 PQLFLQNSSK--LKVLNISKNCLK 275 (567)
Q Consensus 254 ~~~~l~~l~~--L~~L~Ls~N~l~ 275 (567)
|...+..++. |+.|+|++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 9888888887 488999999886
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.8e-17 Score=154.83 Aligned_cols=109 Identities=22% Similarity=0.346 Sum_probs=62.4
Q ss_pred CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L 243 (567)
+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++...|.. +++|++|+|++|.|+.+ |..+..+++|++|
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 4555666666665555543 4555566666666666666555555443 55666666666666554 3445555566666
Q ss_pred EccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+|++|.|+.+++..|..+++|+.|+|++|++.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66666666555555555566666666665554
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1e-17 Score=164.68 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=125.5
Q ss_pred CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS 159 (567)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~ 159 (567)
+.++..++++.|.++....+..+++|+.|++++|.++.++ +..+++|++|++++|+++.+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~------------------- 78 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL------------------- 78 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-------------------
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC-------------------
Confidence 4466777788888777666677778888888888777664 45566666666666655443
Q ss_pred ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423 160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239 (567)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 239 (567)
++...+++|++|+|++|.++.+|.... ++|+.|++++|.++.++. +.. +++|+.|+|++|+|++++ .+..+++
T Consensus 79 -~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~--l~~-l~~L~~L~Ls~N~i~~~~-~l~~l~~ 151 (263)
T 1xeu_A 79 -SPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDS--LIH-LKNLEILSIRNNKLKSIV-MLGFLSK 151 (263)
T ss_dssp -GGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGG--GTT-CTTCCEEECTTSCCCBCG-GGGGCTT
T ss_pred -hhhccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChh--hcC-cccccEEECCCCcCCCCh-HHccCCC
Confidence 332225678888888888887765333 788888888888887753 333 788888888888888886 5778888
Q ss_pred CcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 240 L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
|+.|+|++|.|+.+ ..+..+++|+.|++++|+++..|.
T Consensus 152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 88888888888887 346788888888888888887764
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5e-17 Score=152.43 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred cCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCC
Q psy12423 100 LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178 (567)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~ 178 (567)
...+++|+.|++++|.++.++ +..+++|++|++++|.+. .+.....+++|++|++++|.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--------------------~~~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--------------------NYNPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--------------------CCGGGTTCTTCCEEEEECTT
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--------------------cchhhhcCCCCCEEEeECCc
Confidence 345667777777777777643 455566666666655443 33322236788888888888
Q ss_pred CCC-cccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC-CCCCchhhhCCCCCcEEEccCCCCCCCchh
Q psy12423 179 LES-LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPSLIRQIASLKYLFLQSNSINILPQL 256 (567)
Q Consensus 179 l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~ 256 (567)
++. .|..+..+++|++|++++|.++......+.. +++|++|+|++|. ++.+| .+..+++|+.|++++|.|+.++
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--
Confidence 885 5677888899999999999988644444444 8899999999997 88887 5788899999999999998887
Q ss_pred hhcCCCCCcEEEccCCcCC
Q psy12423 257 FLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~ 275 (567)
.+..+++|+.|++++|+|.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 3578899999999999875
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=153.13 Aligned_cols=154 Identities=24% Similarity=0.294 Sum_probs=131.8
Q ss_pred cEEEcCCCccccccCCCCCCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225 (567)
Q Consensus 148 ~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 225 (567)
+.+++++|.++.++. .++..+++|+|++|.++.++ ..|..+++|+.|+|++|.|+.++...|.. +++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSS
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEECCCC
Confidence 466777777776643 33567899999999999874 35889999999999999999999877766 999999999999
Q ss_pred CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCcc
Q psy12423 226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~~ 303 (567)
.|+.++. .+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+ |..+..+.+|..+++..|.+.+.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999776 589999999999999999999888889999999999999999988 55666788999999998888766443
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.5e-17 Score=161.86 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=128.5
Q ss_pred CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423 77 EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN 155 (567)
Q Consensus 77 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n 155 (567)
.+..+++|+.|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|+++.++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~-------------- 101 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN-------------- 101 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCT--------------
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcC--------------
Confidence 34567899999999999998778889999999999999999875 777788888888887776543
Q ss_pred ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423 156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235 (567)
Q Consensus 156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 235 (567)
.... ++|+.|++++|.++.++ .+..+++|+.|++++|+++.++. +.. +++|+.|+|++|.++++ ..+.
T Consensus 102 ------~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~-l~~L~~L~L~~N~i~~~-~~l~ 169 (263)
T 1xeu_A 102 ------GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGF-LSKLEVLDLHGNEITNT-GGLT 169 (263)
T ss_dssp ------TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGG-CTTCCEEECTTSCCCBC-TTST
T ss_pred ------cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--Hcc-CCCCCEEECCCCcCcch-HHhc
Confidence 1112 57899999999998876 48889999999999999998862 333 89999999999999988 6688
Q ss_pred CCCCCcEEEccCCCCCCCchhh
Q psy12423 236 QIASLKYLFLQSNSINILPQLF 257 (567)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~l~~~~ 257 (567)
.+++|+.|++++|.++..|...
T Consensus 170 ~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp TCCCCCEEEEEEEEEECCCEEC
T ss_pred cCCCCCEEeCCCCcccCCcccc
Confidence 8999999999999998877643
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.1e-16 Score=147.38 Aligned_cols=146 Identities=24% Similarity=0.322 Sum_probs=109.6
Q ss_pred EEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCC
Q psy12423 129 SIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ 204 (567)
Q Consensus 129 ~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~ 204 (567)
.++++++.++.++.. .++|+.|++++|.++.++...+ +++|++|++++|.++.+|. .|..+++|++|+|++|.++.
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 344444444444322 2345555555555555555443 6788888898888888765 56788899999999999988
Q ss_pred CChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 205 LPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 205 l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
++...+.. +++|++|+|++|.|+.++.. +..+++|++|+|++|.|+.+++..+..+++|+.|++++|++.
T Consensus 91 ~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 91 LPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 88877655 88899999999988887764 678889999999999999888887888889999999999776
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.3e-16 Score=149.72 Aligned_cols=154 Identities=26% Similarity=0.327 Sum_probs=136.1
Q ss_pred CCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223 (567)
Q Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls 223 (567)
++.+.++++++.++.++.. ++++|++|+|++|.++.+ |..|..+++|+.|+|++|.|+.++...|.. +++|+.|+|+
T Consensus 19 Cs~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-l~~L~~L~Ls 96 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-LTQLTVLDLG 96 (229)
T ss_dssp EETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred EeCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-CCCcCEEECC
Confidence 4567899999999988753 468999999999999987 668999999999999999999999888776 9999999999
Q ss_pred CCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 224 ~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~ 301 (567)
+|.|+.++. .+..+++|++|+|++|.|+.+|..+ ..+++|+.|+|++|+|+.+|.. +..+.+|..+++..|.+.+.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999876 4689999999999999999998875 7899999999999999999975 457888998888888887654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1e-19 Score=198.00 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=74.2
Q ss_pred cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC
Q psy12423 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 247 (567)
.|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+|..+.. +++|+.|+|++|.|+++| .+..+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG--CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc--CCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 36667777777776665 66677777777777777777665443 677777777777777766 566777777777777
Q ss_pred CCCCCCc-hhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 248 NSINILP-QLFLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 248 N~l~~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
|.|+.++ +..+..+++|+.|+|++|+|+.+|+.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 7777664 44456677777777777777766654
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.4e-17 Score=169.40 Aligned_cols=237 Identities=17% Similarity=0.151 Sum_probs=157.7
Q ss_pred cEEEccCCCCCcCCccCCCC--CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc--ccCC
Q psy12423 2 QEFRVDRNDLTEFPGNQDSF--PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV--ERRE 77 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~~~~~l--~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~ 77 (567)
+.|+++++.+. |..+..+ ++++.|++++|.+...+..++ .++.|+.+ +...+.+.. .+..
T Consensus 50 ~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L-------------~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 50 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHM-------------DLSNSVIEVSTLHGI 113 (336)
T ss_dssp SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CCBCCCEE-------------ECTTCEECHHHHHHH
T ss_pred eeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-cCCCCCEE-------------EccCCCcCHHHHHHH
Confidence 45666666554 3334444 566666666666665444333 34444333 111111110 1123
Q ss_pred CCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCC-CCCC--CC--CcccccCcEEEcccC-cccce-----ecCC
Q psy12423 78 PEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSEN-SIES--LD--LGALNRLESIKCSRN-QLKTL-----VLNG 144 (567)
Q Consensus 78 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~--~~--~~~l~~L~~L~ls~n-~l~~l-----~~~~ 144 (567)
+..+++|++|+|++|.+++.. .+..+++|++|++++| .++. ++ +..+++|++|++++| .++.. ...+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 356789999999999987543 6788999999999999 6775 22 567899999999999 88753 2457
Q ss_pred C-CCcEEEcCCCc--ccc--ccCCCC-CCcccEEecccCC-CC-CcccccCCCcCCcEEECcCCC-CCCCChhhhhccCC
Q psy12423 145 S-SLISVIAGNNK--LQS--LIVSPR-PARLQHLDISYNE-LE-SLPDWIDTCPELETIFASHNR-ITQLPSQFFCRELG 215 (567)
Q Consensus 145 ~-~L~~L~l~~n~--l~~--~~~~~~-~~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~ 215 (567)
+ +|+.|++++|. ++. ++.... +++|++|++++|. ++ ..+..+..+++|++|++++|. +.......+.. ++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~ 272 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IP 272 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CC
Confidence 7 99999999994 442 221111 7899999999999 65 556788899999999999996 33211113443 89
Q ss_pred CccEEECCCCCCCCCchhhhCC-CCCcEEEccCCCCCCCchhhh
Q psy12423 216 KLHTLQLSFNRLTSLPSLIRQI-ASLKYLFLQSNSINILPQLFL 258 (567)
Q Consensus 216 ~L~~L~Ls~N~l~~lp~~~~~l-~~L~~L~Ls~N~l~~l~~~~l 258 (567)
+|+.|++++| ++. ..+..+ ..|..|++++|.++++.+..+
T Consensus 273 ~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 273 TLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 9999999999 443 122222 235666689999997766544
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.6e-19 Score=196.58 Aligned_cols=188 Identities=20% Similarity=0.178 Sum_probs=129.9
Q ss_pred CCCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCC-------------CCCC---CCcccccCcEEE-cccCcccce
Q psy12423 79 EVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENS-------------IESL---DLGALNRLESIK-CSRNQLKTL 140 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~-------------l~~~---~~~~l~~L~~L~-ls~n~l~~l 140 (567)
..+++|+.|+|++|+++..+ .++.+++|+.|++++|. +... .++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45667788888888776554 56777778888776553 1211 144556666666 444433222
Q ss_pred e-----------cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhh
Q psy12423 141 V-----------LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQF 209 (567)
Q Consensus 141 ~-----------~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~ 209 (567)
. .....|+.|++++|.+++++....+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.+| .+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 1 01235778888888888776522277888888888888888888888888888888888888877 33
Q ss_pred hhccCCCccEEECCCCCCCCC--chhhhCCCCCcEEEccCCCCCCCchh---hhcCCCCCcEEEc
Q psy12423 210 FCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQL---FLQNSSKLKVLNI 269 (567)
Q Consensus 210 ~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~l~~~---~l~~l~~L~~L~L 269 (567)
. . +++|+.|+|++|.|+++ |..+..+++|+.|+|++|.|+.+|+. ++..+++|+.|++
T Consensus 505 ~-~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 A-N-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp T-T-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-C-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3 2 78888888888888876 77788888888888888888877653 2345778887764
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=7e-18 Score=185.15 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=90.9
Q ss_pred CCCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccc-----eecCCCCCc
Q psy12423 79 EVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKT-----LVLNGSSLI 148 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~-----l~~~~~~L~ 148 (567)
..+++|+.|+++++...... .+..+++|++|++++|.++... +..+++|++|+++ +.+.. +...+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 44455666666554333322 3445566666666666654321 2455666666665 22221 112345566
Q ss_pred EEEcC-----------CCccccccCCCC---CCcccEEecccCCCCC-cccccCC-CcCCcEEECc----CCCCCCCChh
Q psy12423 149 SVIAG-----------NNKLQSLIVSPR---PARLQHLDISYNELES-LPDWIDT-CPELETIFAS----HNRITQLPSQ 208 (567)
Q Consensus 149 ~L~l~-----------~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls----~N~l~~l~~~ 208 (567)
.|+++ .+.++......+ +++|++|+++.|.++. .+..+.. +++|+.|+++ .|.++..|..
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 66665 234433222111 4556666665555552 1222322 5556666664 4455543321
Q ss_pred -----hhhccCCCccEEECCCCC--CCC--CchhhhCCCCCcEEEccCCCCCCC-chhhhcCCCCCcEEEccCCcCC
Q psy12423 209 -----FFCRELGKLHTLQLSFNR--LTS--LPSLIRQIASLKYLFLQSNSINIL-PQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 209 -----~~~~~l~~L~~L~Ls~N~--l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
++.. +++|++|+|++|. ++. +......+++|++|+|++|.++.. .+.++..+++|+.|+|++|+|+
T Consensus 426 ~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 426 NGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 1222 5555555554322 332 111123355555555555555531 1223345555555555555544
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=9.9e-18 Score=183.95 Aligned_cols=290 Identities=12% Similarity=0.061 Sum_probs=197.4
Q ss_pred CcEEEccCCCCCc-----CCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchh--------------hc
Q psy12423 1 LQEFRVDRNDLTE-----FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE--------------RE 61 (567)
Q Consensus 1 L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~--------------~~ 61 (567)
|++|+|++|.++. ++..+.++++|++|+|++|.+..+|.. +..++.|+.+.-...... .+
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 7899999999873 344567889999999999998887744 344555554411000000 00
Q ss_pred cccccccCCcccccCCCCCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcc-
Q psy12423 62 EDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCS- 133 (567)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls- 133 (567)
.............+..+..+++|++|+|++|.++... .+..+++|+.|+++ +.+.... ...+++|++|+++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 0000001111122334456789999999999976543 36889999999999 4444321 3567899999999
Q ss_pred ----------cCcccce-----ecCCCCCcEEEcCCCccccccCCCC---CCcccEEecc----cCCCCCc------ccc
Q psy12423 134 ----------RNQLKTL-----VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDIS----YNELESL------PDW 185 (567)
Q Consensus 134 ----------~n~l~~l-----~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls----~n~l~~l------p~~ 185 (567)
.|.++.. ...+++|+.|++..|.+++.....+ +++|+.|+++ .|.++.. +..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 3566543 2357899999998888877554443 7789999997 6677764 334
Q ss_pred cCCCcCCcEEECcCCC--CCC-CChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCcEEEccCCCCCCC-chhhhc
Q psy12423 186 IDTCPELETIFASHNR--ITQ-LPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINIL-PQLFLQ 259 (567)
Q Consensus 186 l~~l~~L~~L~Ls~N~--l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-~~~~l~ 259 (567)
+..+++|+.|++++|. ++. ....+... +++|++|+|++|.+++ ++..+..+++|++|+|++|.++.. ...+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHS-CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHh-CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 6678999999998643 552 22233333 8899999999999985 566778899999999999998742 333446
Q ss_pred CCCCCcEEEccCCcCCCCCC--CCcCCccceeeccc
Q psy12423 260 NSSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLR 293 (567)
Q Consensus 260 ~l~~L~~L~Ls~N~l~~ip~--~~~~~~~L~~~~l~ 293 (567)
.+++|+.|+|++|+++...- ....++.+.+..+.
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 79999999999999874321 12244555554443
No 134
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5.9e-16 Score=145.07 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=120.9
Q ss_pred CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423 79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157 (567)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l 157 (567)
..+++|++|++++|.++....+..+++|++|++++|.++.+ .+..+++|++|++++|.++...
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~---------------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK---------------- 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGG----------------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCccc----------------
Confidence 45679999999999999767888999999999999988876 4677778888877777765421
Q ss_pred ccccCCCC--CCcccEEecccCCCCC-cccccCCCcCCcEEECcCCC-CCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423 158 QSLIVSPR--PARLQHLDISYNELES-LPDWIDTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233 (567)
Q Consensus 158 ~~~~~~~~--~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 233 (567)
+..+ +++|++|++++|.++. .|..+..+++|++|++++|. ++.++. +.. +++|+.|++++|.++.++ .
T Consensus 105 ----~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~-l~~L~~L~l~~n~i~~~~-~ 176 (197)
T 4ezg_A 105 ----IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKT-LPELKSLNIQFDGVHDYR-G 176 (197)
T ss_dssp ----SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGG-CSSCCEEECTTBCCCCCT-T
T ss_pred ----ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcC-CCCCCEEECCCCCCcChH-H
Confidence 1112 5789999999999985 57788999999999999998 888873 333 899999999999999987 6
Q ss_pred hhCCCCCcEEEccCCCCCC
Q psy12423 234 IRQIASLKYLFLQSNSINI 252 (567)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~ 252 (567)
+..+++|++|++++|+|..
T Consensus 177 l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGCSSCCEEEECBC----
T ss_pred hccCCCCCEEEeeCcccCC
Confidence 8889999999999998864
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.2e-15 Score=138.96 Aligned_cols=134 Identities=20% Similarity=0.175 Sum_probs=112.2
Q ss_pred CCCcEEEcCCCccc--cccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 145 SSLISVIAGNNKLQ--SLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 145 ~~L~~L~l~~n~l~--~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
++|+.|++++|.++ .++.... +++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+.. +++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCEEe
Confidence 56667777777766 4433312 78999999999999988 77889999999999999999844444443 89999999
Q ss_pred CCCCCCCCCc--hhhhCCCCCcEEEccCCCCCCCch---hhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 222 LSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQ---LFLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 222 Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
|++|.++.+| ..+..+++|++|++++|.++.+|. ..+..+++|+.|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999999987 678899999999999999999987 5778999999999999999999864
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=140.36 Aligned_cols=124 Identities=31% Similarity=0.422 Sum_probs=66.5
Q ss_pred EEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423 150 VIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229 (567)
Q Consensus 150 L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 229 (567)
+++++|.++.++.. ++++|++|+|++|.++.+|..|..+++|+.|+|++|.|+.++...|.. +++|++|+|++|.|+.
T Consensus 15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~-l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCB
T ss_pred EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC-CCCCCEEECCCCccCE
Confidence 44444444443321 234555555555555555555555555555555555555555554443 5555555555555555
Q ss_pred Cch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 230 LPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 230 lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
++. .+..+++|++|+|++|.|+.+|+..|..+++|+.|+|++|++.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 443 3555555555555555555555555555555555555555443
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=9e-16 Score=155.83 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=49.7
Q ss_pred CcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCc-EEEccCCCCCCCchhhhcCCCCCcE
Q psy12423 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLK-YLFLQSNSINILPQLFLQNSSKLKV 266 (567)
Q Consensus 189 l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~-~L~Ls~N~l~~l~~~~l~~l~~L~~ 266 (567)
+++|+.|+|++|+++.|+...|.+ +.+|+.|+|.+| ++.++. .|.++++|+ .|++.+ .++.|+...|.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 455555555555555555555554 555555555554 444443 355555555 555555 555555555555555555
Q ss_pred EEccCCcCCCCCCC
Q psy12423 267 LNISKNCLKMLPSL 280 (567)
Q Consensus 267 L~Ls~N~l~~ip~~ 280 (567)
|++++|.++.|+..
T Consensus 302 l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 302 VLATGDKITTLGDE 315 (329)
T ss_dssp EEECSSCCCEECTT
T ss_pred EEeCCCccCccchh
Confidence 55555555555543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=3e-15 Score=137.59 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=100.9
Q ss_pred CCCCcEEEcCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423 144 GSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222 (567)
Q Consensus 144 ~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L 222 (567)
..+|+.|++++|.++.++.... .++|++|++++|.++.+ ..+..+++|++|++++|.|+.+|..++.. +++|++|+|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA-LPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH-CTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc-CCCCCEEEC
Confidence 4556666666666665532222 34888888888888877 56788888999999999888888777555 888999999
Q ss_pred CCCCCCCCch--hhhCCCCCcEEEccCCCCCCCchh---hhcCCCCCcEEEccCCcCC
Q psy12423 223 SFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQL---FLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 223 s~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~~---~l~~l~~L~~L~Ls~N~l~ 275 (567)
++|.|+.+|. .+..+++|+.|++++|.++.+|.. ++..+++|+.||+++|.+.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9998888887 678888899999999988888775 5678888888888888765
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2e-14 Score=132.01 Aligned_cols=129 Identities=27% Similarity=0.393 Sum_probs=94.0
Q ss_pred CcEEEcCCCccccccCCCCCCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225 (567)
Q Consensus 147 L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 225 (567)
.+.++++++.++.++. ..+++|+.|++++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-CCccCEEECCCC
Confidence 3455566666665542 234677888888888877754 4677788888888888888777776654 778888888888
Q ss_pred CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC
Q psy12423 226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277 (567)
Q Consensus 226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i 277 (567)
.|+.+|. .+..+++|++|++++|.|+.+|+..+..+++|+.|+|++|++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8887665 357778888888888888888877777788888888888877643
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=133.35 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=114.7
Q ss_pred ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccC
Q psy12423 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQS 247 (567)
Q Consensus 169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~ 247 (567)
-+.+++++|.++.+|..+. ++|++|+|++|.|+.+|..+ .. +++|+.|+|++|.|+.++. .|..+++|++|+|++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4689999999999997553 68999999999999999544 44 9999999999999999875 689999999999999
Q ss_pred CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCc
Q psy12423 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDA 302 (567)
Q Consensus 248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~ 302 (567)
|.|+.+++..|..+++|+.|+|++|+|+.+|.. +..+.+|..+++..|.+.+.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999999899999999999999999999986 4478889888888888866544
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.1e-14 Score=135.84 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=69.1
Q ss_pred EEEcCCCccccccCCCCCCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226 (567)
Q Consensus 149 ~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 226 (567)
.+++++|.++.++. .++.+|++|++++|.++.++. .+..+++|++|+|++|.|+.+++..+.. +++|++|+|++|+
T Consensus 12 ~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECCCCc
Confidence 34444444444332 123355666666666665543 2555666666666666666554444443 5566666666666
Q ss_pred CCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 227 LTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 227 l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
|+.++. .+..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665433 3555666666666666666555555555666666666666554
No 142
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=132.29 Aligned_cols=129 Identities=20% Similarity=0.152 Sum_probs=113.1
Q ss_pred CCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcE
Q psy12423 166 PARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKY 242 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~ 242 (567)
+++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+.. +++|++|+|++|.++. +|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 578999999999998 8998889999999999999999988 33333 8999999999999998 7888888999999
Q ss_pred EEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC----CCcCCccceeecccCCcc
Q psy12423 243 LFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS----LQKGFYLLNISQLRLPGF 297 (567)
Q Consensus 243 L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~----~~~~~~~L~~~~l~~~~~ 297 (567)
|+|++|.|+.++. ..+..+++|+.|++++|+++.+|. .+..+++|..+++..+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999999874 567899999999999999999997 566777777777765544
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.9e-14 Score=134.18 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=115.5
Q ss_pred ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChh-hhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEcc
Q psy12423 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQ-FFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQ 246 (567)
Q Consensus 169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls 246 (567)
.+.+++++|.++.+|..+.. +|++|++++|.|+.++.. .+.. +++|++|+|++|.|+++ |..+..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 47899999999999986543 999999999999988874 4554 99999999999999996 6789999999999999
Q ss_pred CCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCcc
Q psy12423 247 SNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDAL 303 (567)
Q Consensus 247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~~ 303 (567)
+|+|+.+++..|..+++|+.|+|++|+|+.+ |..+..+.+|..+++..|.|.+.+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999998889999999999999999966 55666788999999999888766443
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=5.1e-16 Score=170.30 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=109.2
Q ss_pred CCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccc-----eecCCCCCcEEEcC---------CCccccccCC
Q psy12423 102 NYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKT-----LVLNGSSLISVIAG---------NNKLQSLIVS 163 (567)
Q Consensus 102 ~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~-----l~~~~~~L~~L~l~---------~n~l~~~~~~ 163 (567)
.+++|++|++++|.++... +..+++|++|++++| +.. +...+++|+.|++. .+.++.....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 4577888888888766432 346777888888777 332 11246777777772 3344432222
Q ss_pred CC---CCcccEEecccCCCCCc-cccc-CCCcCCcEEECc--C----CCCCCCChh-----hhhccCCCccEEECCCCCC
Q psy12423 164 PR---PARLQHLDISYNELESL-PDWI-DTCPELETIFAS--H----NRITQLPSQ-----FFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 164 ~~---~~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls--~----N~l~~l~~~-----~~~~~l~~L~~L~Ls~N~l 227 (567)
.+ +++|++|.+..|.++.. +..+ ..+++|+.|+++ + +.++..|.. ++.. +++|+.|+|++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cc
Confidence 21 56777777777777632 2223 346778888887 3 455544431 1222 67788888866 44
Q ss_pred CC-Cchhh-hCCCCCcEEEccCCCCCCCchh-hhcCCCCCcEEEccCCcCCCC--CCCCcCCccceeecccCC
Q psy12423 228 TS-LPSLI-RQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKML--PSLQKGFYLLNISQLRLP 295 (567)
Q Consensus 228 ~~-lp~~~-~~l~~L~~L~Ls~N~l~~l~~~-~l~~l~~L~~L~Ls~N~l~~i--p~~~~~~~~L~~~~l~~~ 295 (567)
+. .+..+ ..+++|+.|+|++|.++..... +...+++|+.|+|++|+++.. +.....+++|+.+++..+
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 43 12223 2367788888888777643322 225577788888888877521 112223445555555443
No 145
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=2.1e-14 Score=127.96 Aligned_cols=103 Identities=20% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc--hhhhCCCCCcEE
Q psy12423 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYL 243 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L 243 (567)
+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+.. +++|++|++++|.++++| ..+..+++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 44555555555555555 44555555555555555555522222222 555555555555555543 445555555555
Q ss_pred EccCCCCCCCch---hhhcCCCCCcEEEcc
Q psy12423 244 FLQSNSINILPQ---LFLQNSSKLKVLNIS 270 (567)
Q Consensus 244 ~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls 270 (567)
++++|.++.+++ ..+..+++|+.|+++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555554 344555555555554
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.1e-14 Score=163.05 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=81.6
Q ss_pred CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccc---eecCCCCCcEEEcCCCccc
Q psy12423 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT---LVLNGSSLISVIAGNNKLQ 158 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~---l~~~~~~L~~L~l~~n~l~ 158 (567)
+.++.|+|.+|.+.... ...|+.++|+.|.|..+. ++.|.+.. ....+..|+.|++++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~----~~~l~~l~Ls~~~i~~~~-----------~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN----QALLQHKKLSQYSIDEDD-----------DIENRMVMPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcch----hhHhhcCccCcccccCcc-----------ccccceecChhhhccCCCCcEEECCCCCCC
Confidence 45667777776665422 123444455555443321 11222211 1123455566666666666
Q ss_pred cccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423 159 SLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237 (567)
Q Consensus 159 ~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 237 (567)
.++...+ +++|++|+|++|.|+.+|..|..+++|++|+|++|.|+.+|..+.. +++|++|+|++|.|+.+|..+..+
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~lp~~~~~l 315 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS--CFQLKYFYFFDNMVTTLPWEFGNL 315 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG--GTTCSEEECCSSCCCCCCSSTTSC
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC--CCCCCEEECCCCCCCccChhhhcC
Confidence 5544444 6677778888887777777777777888888888887777766544 777888888888777777777777
Q ss_pred CCCcEEEccCCCCCCCchhhh
Q psy12423 238 ASLKYLFLQSNSINILPQLFL 258 (567)
Q Consensus 238 ~~L~~L~Ls~N~l~~l~~~~l 258 (567)
++|++|+|++|.|+..++..+
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHH
T ss_pred CCccEEeCCCCccCCCChHHH
Confidence 788888888888776655544
No 147
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.6e-14 Score=128.68 Aligned_cols=124 Identities=25% Similarity=0.253 Sum_probs=107.3
Q ss_pred CCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcE
Q psy12423 166 PARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKY 242 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~ 242 (567)
+++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+.. +++|++|+|++|.+++ +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 568999999999998 8898889999999999999999988 33333 8999999999999998 8888888999999
Q ss_pred EEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC----CCcCCccceeecc
Q psy12423 243 LFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS----LQKGFYLLNISQL 292 (567)
Q Consensus 243 L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~----~~~~~~~L~~~~l 292 (567)
|++++|.++.++. ..+..+++|+.|++++|+++.+|. .+..+++|+.+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9999999999763 567899999999999999999987 3445666666554
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=2.4e-15 Score=168.45 Aligned_cols=191 Identities=20% Similarity=0.204 Sum_probs=87.1
Q ss_pred CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc-cc
Q psy12423 22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-IL 100 (567)
Q Consensus 22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l 100 (567)
+.++.|+|.+|.+..++..+...+ .|... ++..++++.|.+.... .+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l-~Ls~~-------------------------------~i~~~~~~~n~~~~~~~~~ 220 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHK-KLSQY-------------------------------SIDEDDDIENRMVMPKDSK 220 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccceEEeeCCCCCcchhhHhhcC-ccCcc-------------------------------cccCccccccceecChhhh
Confidence 567888888888777665442211 11111 3444455555554322 46
Q ss_pred CCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC-CCcccEEecccC
Q psy12423 101 GNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYN 177 (567)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n 177 (567)
..+++|+.|+|++|.+..++ +..+++|++|+|++|.|+.++ .... +++|++|+|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp--------------------~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP--------------------AEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC--------------------GGGGGGTTCCEEECTTS
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC--------------------hhhhCCCCCCEEeCcCC
Confidence 66777777777777777654 344555555555555554332 1111 567788888888
Q ss_pred CCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCC-CCcEEEccCCCCCCCch
Q psy12423 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIA-SLKYLFLQSNSINILPQ 255 (567)
Q Consensus 178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~-~L~~L~Ls~N~l~~l~~ 255 (567)
.|+.+|..|..+++|++|+|++|.|+.+|..+.. +++|+.|+|++|.|++ +|..+..+. .+..|+|++|.++...+
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN--LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTS--CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCCccChhhcCCCCCCEEECCCCCCCccChhhhc--CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 8887887788888888888888888888776433 7788888888888876 344443321 12246777887774433
Q ss_pred hhhcCCCCCcEEEccCC
Q psy12423 256 LFLQNSSKLKVLNISKN 272 (567)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N 272 (567)
..|..|++++|
T Consensus 359 ------~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ------HERRFIEINTD 369 (727)
T ss_dssp ------CC---------
T ss_pred ------cccceeEeecc
Confidence 24556666666
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=4.2e-16 Score=170.93 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=112.9
Q ss_pred ccccCcEEEcccCcccce-----ecCCCCCcEEEcCCCccccccCCCC---CCcccEEeccc---------CCCCC--cc
Q psy12423 123 ALNRLESIKCSRNQLKTL-----VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISY---------NELES--LP 183 (567)
Q Consensus 123 ~l~~L~~L~ls~n~l~~l-----~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~---------n~l~~--lp 183 (567)
.+++|++|++++|.+... ...+++|+.|++++| ++......+ +++|++|++++ +.++. +.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 467899999999986642 246789999999887 443222211 67899999843 34442 22
Q ss_pred cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC--C----CCCCCCc------hhhhCCCCCcEEEccCCCCC
Q psy12423 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS--F----NRLTSLP------SLIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls--~----N~l~~lp------~~~~~l~~L~~L~Ls~N~l~ 251 (567)
.....+++|+.|.+..|.++......+...+++|+.|+|+ + +.++..| ..+..+++|+.|+|++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 2233578999998888888843333222127899999998 4 5677543 2367788999999977 666
Q ss_pred CCchhhhc-CCCCCcEEEccCCcCCCC--CCCCcCCccceeecccCCcc
Q psy12423 252 ILPQLFLQ-NSSKLKVLNISKNCLKML--PSLQKGFYLLNISQLRLPGF 297 (567)
Q Consensus 252 ~l~~~~l~-~l~~L~~L~Ls~N~l~~i--p~~~~~~~~L~~~~l~~~~~ 297 (567)
......+. .+++|+.|+|++|.++.. +....++++|+.+++..+.+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 43333333 488999999999988621 11112455666666666655
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.4e-13 Score=126.37 Aligned_cols=130 Identities=25% Similarity=0.330 Sum_probs=115.2
Q ss_pred cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEcc
Q psy12423 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQ 246 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls 246 (567)
+.+.+++++|.++.+|..+ .++|+.|++++|+++.++...+.. +++|++|+|++|.++.+|.. +..+++|++|+|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4678999999999998644 379999999999999999887765 89999999999999998764 6899999999999
Q ss_pred CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccC
Q psy12423 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNS 300 (567)
Q Consensus 247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~ 300 (567)
+|.|+.+++..+..+++|+.|++++|+|+.+|... ..+.+|..+++..|.+.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999999998899999999999999999999875 4688888888888876643
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=3.3e-14 Score=144.27 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc-EEEccCCcCCCCCCCCc-CCccceee
Q psy12423 214 LGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK-VLNISKNCLKMLPSLQK-GFYLLNIS 290 (567)
Q Consensus 214 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~-~L~Ls~N~l~~ip~~~~-~~~~L~~~ 290 (567)
+++|+.|+|++|.++.+|. .|.++++|+.|+|.+| ++.|+...|.++++|+ .+++.+ .++.|++..+ ++.+|...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 3455555555555555443 3445555555555554 5555555555555555 555554 4444443322 34444443
Q ss_pred cc
Q psy12423 291 QL 292 (567)
Q Consensus 291 ~l 292 (567)
.+
T Consensus 303 ~l 304 (329)
T 3sb4_A 303 LA 304 (329)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=9.5e-15 Score=134.18 Aligned_cols=130 Identities=21% Similarity=0.164 Sum_probs=109.0
Q ss_pred CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEE
Q psy12423 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLF 244 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~ 244 (567)
+.+|+.|++++|.++.+|......++|+.|++++|.|+.++ .+.. +++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--cccc-CCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 67899999999999998764444459999999999999872 3333 89999999999999998864 48999999999
Q ss_pred ccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCCC----CcCCccceeecccCCccc
Q psy12423 245 LQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPSL----QKGFYLLNISQLRLPGFC 298 (567)
Q Consensus 245 Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~~----~~~~~~L~~~~l~~~~~~ 298 (567)
|++|.|+.+|. ..+..+++|+.|++++|+++.+|.. +..++.|..+++..+...
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999886 4567999999999999999999975 567777777776655443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=1.2e-12 Score=136.12 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=141.0
Q ss_pred CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCC--cccccCcEEEcccCccccee----cCCCCCcEEEcCC
Q psy12423 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV----LNGSSLISVIAGN 154 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~--~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~ 154 (567)
+|+.+.+.. .++... .|.++++|+.+++..|.++.++- ..+.+|+.+.+..+ ++.+. ..+.+|+.+.+..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 466666654 444332 57777777777777777776541 12467777777633 55544 2456777777775
Q ss_pred CccccccCCCC-CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCC-----CCChhhhhccCCCccEEECCCCCC
Q psy12423 155 NKLQSLIVSPR-PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRIT-----QLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
+ ++.+....| ..+|+.+.+. +.++.|+ ..|..+++|+.+.+.+|.+. .++...|.+ +++|+.+.|. +.+
T Consensus 236 ~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCEECCC-TTC
T ss_pred C-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCeEEeC-Cce
Confidence 3 666666666 5688899884 5677775 47889999999999888776 688888887 8899999998 457
Q ss_pred CCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423 228 TSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282 (567)
Q Consensus 228 ~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 282 (567)
+.++. .|.++++|+.+.|..| ++.|+...|.++ +|+.+++.+|.+..++...+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 77765 6788899999999554 888998889999 99999999998888776533
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.9e-13 Score=123.14 Aligned_cols=109 Identities=22% Similarity=0.290 Sum_probs=93.6
Q ss_pred ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccC
Q psy12423 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQS 247 (567)
Q Consensus 169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~ 247 (567)
-+.+++++|.++.+|..+. ++|+.|+|++|.|+.+++..+.. +++|++|+|++|+|+.+|.. +..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4678899999998887654 78999999999999887777665 88999999999999998875 57899999999999
Q ss_pred CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280 (567)
Q Consensus 248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~ 280 (567)
|+|+.+|+..|..+++|+.|+|++|++...|..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 999999988888899999999999999877754
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.8e-13 Score=122.74 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=89.9
Q ss_pred cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEcc
Q psy12423 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQ 246 (567)
Q Consensus 168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls 246 (567)
..+.+++++|.++.+|..+ .++|+.|+|++|.|+.++...|.. +++|++|+|++|+|+.+|.. +..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578888888888888655 378888999999988887776665 88899999999988887764 5788899999999
Q ss_pred CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
+|+|+.+++..|..+++|+.|+|++|+++..++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998888878888999999999998875553
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=4.4e-12 Score=131.92 Aligned_cols=242 Identities=10% Similarity=0.125 Sum_probs=187.0
Q ss_pred CCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423 10 DLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN 88 (567)
Q Consensus 10 ~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 88 (567)
.++.|+. +|.++ +|+.+.|..+ ++.|+...|.+. .|+.+ .....-.......+..+++|+.++
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i-------------~lp~~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEI-------------VFPSTLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEE-------------ECCTTCCEECSSTTTTCTTCCEEE
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEE-------------EeCCCccEehHHHhhCcccCCeee
Confidence 4667764 67775 7999999876 888888887753 33332 111111122235678899999999
Q ss_pred ecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee---cCCCCCcEEEcCCCccccc
Q psy12423 89 LRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSL 160 (567)
Q Consensus 89 Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~ 160 (567)
|..|.++... .|. ..+|+.+.+..+ ++.+ .+..+++|+.+.+..+ ++.+. ....+|+.+.+ .+.++.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNI 262 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEE
Confidence 9999988755 455 589999999854 6665 4778889999999875 55554 23478999999 4668888
Q ss_pred cCCCC--CCcccEEecccCCCC-----Ccc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423 161 IVSPR--PARLQHLDISYNELE-----SLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232 (567)
Q Consensus 161 ~~~~~--~~~L~~L~Ls~n~l~-----~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 232 (567)
....| +.+|+.+++.+|.+. .++ ..|..+++|+.+.|. +.++.|+...|.+ +.+|+.+.|..| ++.++.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~-c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG-NRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT-CCSCCEEEECTT-CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC-CCCccEEEECcc-ccEEcH
Confidence 88877 899999999998775 465 589999999999999 5699999999987 899999999655 777654
Q ss_pred -hhhCCCCCcEEEccCCCCCCCchhhhcCCC-CCcEEEccCCcCC
Q psy12423 233 -LIRQIASLKYLFLQSNSINILPQLFLQNSS-KLKVLNISKNCLK 275 (567)
Q Consensus 233 -~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~-~L~~L~Ls~N~l~ 275 (567)
.|.++ +|+.|++.+|.+..++...|.+++ .+..|.+..+.+.
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 67888 999999999999999988888874 7888888877654
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=3.2e-12 Score=116.51 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=96.5
Q ss_pred CCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423 191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI 269 (567)
Q Consensus 191 ~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L 269 (567)
..+.|++++|.++.+|..+ .++|++|+|++|.|+++ |..+..+++|++|+|++|+|+.+|+..|..+++|+.|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4689999999999999876 57899999999999998 557899999999999999999999999999999999999
Q ss_pred cCCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423 270 SKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 270 s~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~ 301 (567)
++|+|+.+|+. +..+.+|..+++..|.+.+.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999986 557889999999988887654
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.4e-12 Score=116.08 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=96.0
Q ss_pred CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEcc
Q psy12423 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270 (567)
Q Consensus 192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls 270 (567)
-+.+++++|.++.+|..+ .++|+.|+|++|.|+++ |..+..+++|++|+|++|+|+.+|+..|..+++|+.|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999999999876 57899999999999997 5578999999999999999999999988999999999999
Q ss_pred CCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423 271 KNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD 301 (567)
Q Consensus 271 ~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~ 301 (567)
+|+|+.+|+. +..+.+|..+++..|.+.+.+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999999987 557889999999988887654
No 159
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=7.8e-15 Score=137.47 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 245 (567)
+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..... +++|+.|+|++|.++.+| .+..+++|++|++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~--~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV--ADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH--HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhc--CCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 456666666666666665 555666666666666666666554332 456666666666666655 3555666666666
Q ss_pred cCCCCCCCch-hhhcCCCCCcEEEccCCcCCC
Q psy12423 246 QSNSINILPQ-LFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 246 s~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
++|.|+.++. ..+..+++|+.|++++|+++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6666666554 344566666666666666653
No 160
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.8e-14 Score=133.67 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=101.0
Q ss_pred CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 144 GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 144 ~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
+++|+.|++++|.++.++ .+ +++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+ .. +++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~-l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EK-LVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HH-HHHSSEEE
T ss_pred CCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-cc-CCCCCEEE
Confidence 445566666666666644 23 78999999999999999988888899999999999999887 33 33 88999999
Q ss_pred CCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch----------hhhcCCCCCcEEEccCCcCCC
Q psy12423 222 LSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ----------LFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 222 Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~----------~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
|++|.++.++. .+..+++|++|++++|.++..++ .++..+++|+.|| +|.++.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999998775 68899999999999999975543 2467899999987 777663
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.2e-11 Score=122.95 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=79.6
Q ss_pred EEecccC-CCCCcccccCCCcCCcEEECcC-CCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccC
Q psy12423 171 HLDISYN-ELESLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQS 247 (567)
Q Consensus 171 ~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~ 247 (567)
.++++++ .++.+|. +..+++|+.|+|++ |.|+.++...|.. +++|+.|+|++|+|++++. .|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 7888888 88888888888885 8888888776665 7888888888888887554 567788888888888
Q ss_pred CCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423 248 NSINILPQLFLQNSSKLKVLNISKNCLKM 276 (567)
Q Consensus 248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ 276 (567)
|+|+.+|+..|..++ |+.|+|.+|+|..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888877776555 8888888887764
No 162
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=99.15 E-value=8.6e-10 Score=106.39 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=102.7
Q ss_pred eeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEE
Q psy12423 304 IGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIAS 383 (567)
Q Consensus 304 ~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~ 383 (567)
+.+-|+.+.+..+.......-..+.........+. .....+|+.+...... ...++++.+.+.+... .+.+++
T Consensus 42 ~~vaD~~G~G~~aa~~s~~~~~~l~~~~~~~~~~~----~~l~~~n~~l~~~~~~-~~~~T~~~~~id~~~~--~l~~~~ 114 (242)
T 3pu9_A 42 AVLVDGQGSGAGAKRLSLLVAGAAVRLLNEGVRDG----AAARAAHDFLYAMRDG-KVSAALDILSVDLASR--SVLVTR 114 (242)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHHTTT-CCCEEEEEEEEETTTT--EEEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhccCC-CcEEEEEEEEEECCCC--EEEEEe
Confidence 55667666555554444433333322111111223 3444555555443322 2335555555543323 788999
Q ss_pred ecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC------------------
Q psy12423 384 VGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS------------------ 445 (567)
Q Consensus 384 ~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~------------------ 445 (567)
+|++++|++|+|+..+++.++. .+|... ..+++...+.+.++|.+ +|||||||
T Consensus 115 aG~~~~~l~r~g~~~~l~~~~~---~lG~~~-----~~~~~~~~~~l~~Gd~l-ll~TDGl~e~~~~~~~~~g~~~l~~l 185 (242)
T 3pu9_A 115 NSEVPMLLGRNGEFEQISESGG---RIGIYR-----HTRPRVLEFPAEPGLTV-ILVSDGIIGAGGRRGQPLEFLATGGR 185 (242)
T ss_dssp ESCCCEEEEETTEEEEECCCCC---CBSSCT-----TCCCEEEEEECCTTCEE-EEECHHHHTTTTTTTCCCCHHHHHHH
T ss_pred CCCCcEEEEECCEEEEeCCCCc---cccccC-----CCCceEEEEEeCCCCEE-EEECcCcccCCCCccccccHHHHHHH
Confidence 9999999999999999998764 455332 24677888888887655 58999998
Q ss_pred ------CHHHHHHHHHHHHHHcC---CCCCcEEEEEEeCC
Q psy12423 446 ------EPVLAAKRIQDLAQSYG---SEDNLSVLVLRFQG 476 (567)
Q Consensus 446 ------~~~~~a~~l~~~a~~~g---~~dnit~~vv~~~~ 476 (567)
+++++++.|++.|..++ ..||||++|+++..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~DDiTvlvv~~~~ 225 (242)
T 3pu9_A 186 VAGPETPAQAIADELLEAALVADDGRAGDDMTVVVLRLRN 225 (242)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHTTTSCSSCEEEEEEEEEE
T ss_pred HhccCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEec
Confidence 57789999999999876 67999999999873
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=3.5e-12 Score=131.32 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCccEEEecCCCCCCcc------ccC-CCCCccEEEccCCCCCC
Q psy12423 82 GELTSVNLRSNQLKGTI------ILG-NYGNLTTLDVSENSIES 118 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~------~l~-~l~~L~~L~L~~n~l~~ 118 (567)
+.|+.|+|++|.++... .+. ..++|++|+|++|.++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 115 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP 115 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH
Confidence 35666666666665422 111 22456666666665543
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=126.83 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCcEEEcCCCccccccCCCC---CCcccEEecccCCCCCc-----cccc-CCCcCCcEEECcCCCCCCCChhhh----h
Q psy12423 145 SSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESL-----PDWI-DTCPELETIFASHNRITQLPSQFF----C 211 (567)
Q Consensus 145 ~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~l-----p~~l-~~l~~L~~L~Ls~N~l~~l~~~~~----~ 211 (567)
.+|+.|++++|.++......+ +.+|+.|+|++|.++.. ...+ ...++|++|+|++|.|+......+ .
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455666666665554333222 45678888888877632 2222 346778888888888764222211 2
Q ss_pred ccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchh----hhcCCCCCcEEEccCCcCC
Q psy12423 212 RELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQL----FLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 212 ~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~----~l~~l~~L~~L~Ls~N~l~ 275 (567)
. .++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+..... .+..+++|++|+|++|.|+
T Consensus 181 ~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 G-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp T-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred c-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2 6778888888888774 345566777888888888888754332 2345678888888888876
No 165
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=99.12 E-value=3.8e-10 Score=108.94 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCC
Q psy12423 344 TMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDP 423 (567)
Q Consensus 344 a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p 423 (567)
.+..+|+.+...... +..++++.+.+.+... +++++|+||+|+|++|+|+..+++.++ +.+|... ..++
T Consensus 75 ~l~~~n~~l~~~~~~-~~~~T~~~~~id~~~~--~l~~~~aG~~~~~l~r~g~~~~l~~~~---~~lG~~~-----~~~~ 143 (242)
T 3t91_A 75 AIKTINSILSLRTTD-EIYSTLDLSIIDLQDA--SCKFLKVGSTPSFIKRGDQVMKVQASN---LPIGIIN-----EFDV 143 (242)
T ss_dssp HHHHHHHHHTTC-----CCCCEEEEEEETTTC--EEEEEEESCCCEEEEETTEEEECCCC--------CCC-----TTCE
T ss_pred HHHHHHHHHHhcCCC-CeEeEEEEEEEECCCC--EEEEEcCCCCceEEEECCEEEEecCCC---ceeEecC-----CCcc
Confidence 344556655544322 3334444444442222 789999999999999999988887654 3355322 2356
Q ss_pred ceEEEEecCCCeEEEEEcCCCC-----------------------CHHHHHHHHHHHHHHcCC---CCCcEEEEEEeC
Q psy12423 424 HVTEVMLHENDHFLILANKSVS-----------------------EPVLAAKRIQDLAQSYGS---EDNLSVLVLRFQ 475 (567)
Q Consensus 424 ~v~~~~l~~~d~~lil~sDGl~-----------------------~~~~~a~~l~~~a~~~g~---~dnit~~vv~~~ 475 (567)
+...+.+.++|. |+||||||| +++++++.|++.+..+++ .||||++++++.
T Consensus 144 ~~~~~~l~~GD~-lll~SDGl~e~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~DDiTvv~i~~~ 220 (242)
T 3t91_A 144 EVVSEQLKAGDL-LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMTVVVVRID 220 (242)
T ss_dssp EEEEEECCTTCE-EEEECHHHHTCSTTCSCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHTTSCCCSCEEEEEEEEE
T ss_pred eEEEEEeCCCCE-EEEECCCcccCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCCceEEEEEEEe
Confidence 777888888765 558999999 567789999999998874 599999999997
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=1.1e-09 Score=113.80 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=138.0
Q ss_pred cEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhh-ccchhhccccc--------cccCCc
Q psy12423 2 QEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH-GIAEEREEDFE--------QDEDGI 71 (567)
Q Consensus 2 ~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~-~~~~~~~~~~~--------~~~~~l 71 (567)
+++.|.. .++.|++ +|.++.+|+.++|..+ ++.++...|.+...|+..... ++.......+. ......
T Consensus 74 ~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~ 151 (394)
T 4fs7_A 74 TEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVT 151 (394)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCC
T ss_pred eEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcccc
Confidence 4455543 3556643 5666777777777543 556666666555544432100 00000000000 000000
Q ss_pred ccccCCCCCCCCccEEEecCCCCC-CccccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccc--ceecCCC
Q psy12423 72 IVERREPEVKGELTSVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLK--TLVLNGS 145 (567)
Q Consensus 72 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~--~l~~~~~ 145 (567)
......+..+.+|+.+.+..+... +...|.++.+|+.+.+..+ ++.+ .+..+..|+.+.+..+... .......
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred ccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 011233445555666665443211 0114555555665555443 2222 2444555555554433211 1112335
Q ss_pred CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423 146 SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223 (567)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls 223 (567)
+|+.+.+.. .++.+....+ +..|+.+.+..+...--...|..+..++.+.+..+. ++...|.. +.+|+.+.+.
T Consensus 231 ~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~-~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYG-CSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTT-CTTCCEEEEC
T ss_pred CCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccc-cccccccccc
Confidence 566665543 2333433333 566777777655332122345566666666554433 34444444 6677777775
Q ss_pred CCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecc
Q psy12423 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQL 292 (567)
Q Consensus 224 ~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l 292 (567)
.+ ++.++. .|.++.+|+.++|.. .++.|+...|.++.+|+.+++..| ++.|+...+ ++.+|.-..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 43 555543 466777777777754 377777777777777777777665 666665433 4444544333
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.9e-10 Score=117.22 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=92.7
Q ss_pred cEEECcCC-CCCCCChhhhhccCCCccEEECCC-CCCCCCc-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423 193 ETIFASHN-RITQLPSQFFCRELGKLHTLQLSF-NRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI 269 (567)
Q Consensus 193 ~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L 269 (567)
..++++++ .|+.+|. +. . +.+|+.|+|++ |.|+.+| ..|..+++|+.|+|++|+|+.+++..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~-~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LP-G-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SC-S-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CC-C-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45789998 9999999 43 3 88999999996 9999987 47899999999999999999999999999999999999
Q ss_pred cCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423 270 SKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA 302 (567)
Q Consensus 270 s~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~ 302 (567)
++|+|+.+|+..+....|..+.+..|.+.+.|.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 999999999887754458888888887776544
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=1.9e-08 Score=104.33 Aligned_cols=242 Identities=16% Similarity=0.201 Sum_probs=126.8
Q ss_pred CCcCC-ccCCCCCCCCEEeCcCCC---CCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccE
Q psy12423 11 LTEFP-GNQDSFPRLKFLSAAQNR---ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTS 86 (567)
Q Consensus 11 l~~lp-~~~~~l~~L~~L~Ls~n~---i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~ 86 (567)
++.|. .+|.++.+|+.+.+..|. ++.++...|.+...|+.+. ....-.......+..+.+|+.
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~-------------~~~~~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP-------------ILDSVTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG-------------GGTTCSEECTTTTTTCTTCCE
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec-------------cCCccceehhhhhhhhccccc
Confidence 55554 357788888888887663 6667777776555554330 000001112244556677777
Q ss_pred EEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccc---eecCCCCCcEEEcCC----
Q psy12423 87 VNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKT---LVLNGSSLISVIAGN---- 154 (567)
Q Consensus 87 L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~---l~~~~~~L~~L~l~~---- 154 (567)
+.+..+ +.... .+..+.+|+.+.+..+ ++.+. +. ..+|+.+.+..+-..- ....+.++.......
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccc
Confidence 777543 22221 5666677777766543 33221 21 2345555443221100 001111222221111
Q ss_pred --------------------------------CccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcC
Q psy12423 155 --------------------------------NKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASH 199 (567)
Q Consensus 155 --------------------------------n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~ 199 (567)
+.++.+....| +..|+.+.+.++. ..+. ..|..+..|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS- 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-
Confidence 12233333333 4566666665432 2332 356666677777664
Q ss_pred CCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273 (567)
Q Consensus 200 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~ 273 (567)
+.++.|+...|.+ +.+|+.+.|..+ ++.+.. .|.++.+|+.+.|..+ ++.|....|.+|++|+.+++.+|.
T Consensus 297 ~~i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 297 SRITELPESVFAG-CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcccccCceeecC-CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 4566666666665 667777777543 555443 5666677777777543 666777677777777777776654
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=2.9e-09 Score=110.49 Aligned_cols=275 Identities=13% Similarity=0.048 Sum_probs=175.4
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhh---------ccccccccCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER---------EEDFEQDEDG 70 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~---------~~~~~~~~~~ 70 (567)
|+.++|.++ ++.|++ +|.++.+|+.+.+..+ +..+....|.+...+......+..... +.........
T Consensus 96 L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~ 173 (394)
T 4fs7_A 96 LEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM 173 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC
T ss_pred CcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc
Confidence 567777654 777764 6888999988877643 444444444433222211100000000 0000111111
Q ss_pred cccccCCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee----cC
Q psy12423 71 IIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV----LN 143 (567)
Q Consensus 71 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~----~~ 143 (567)
.......+..+.+|+.+.+..+ ++... .+.++..|+.+.+..+....- ......+|+.+.+..+ +..+. ..
T Consensus 174 ~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~ 251 (394)
T 4fs7_A 174 ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYG 251 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTT
T ss_pred ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccc
Confidence 1223355677889999998766 44322 678888898888776543221 2334567888887543 33332 34
Q ss_pred CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423 144 GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221 (567)
Q Consensus 144 ~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 221 (567)
+..++.+.+..+. ..+....+ +..++.+.+..+.+.. ..|..+.+|+.+.+..+ ++.|+...|.+ +.+|+.++
T Consensus 252 ~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-c~~L~~i~ 326 (394)
T 4fs7_A 252 CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFES-CTSLVSID 326 (394)
T ss_dssp CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTT-CTTCCEEC
T ss_pred cccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcC-CCCCCEEE
Confidence 6788888887664 34444444 7788888776654322 36788999999999765 88899888886 89999999
Q ss_pred CCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccc
Q psy12423 222 LSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287 (567)
Q Consensus 222 Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L 287 (567)
|..+ ++.++. .|.++.+|+.+.+..+ ++.|+...|.+|++|+.+++..+ ++.+...+.+..+|
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKF 390 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCC
Confidence 9754 777754 7889999999999877 99999999999999999999764 44443333344333
No 170
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=98.79 E-value=4.9e-08 Score=94.77 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecC-ceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCc
Q psy12423 341 MKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGE-AKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLS 419 (567)
Q Consensus 341 l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gd-sr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~ 419 (567)
....+..+|+.+... ..+..++++.+.+.+... .+.++++|+ .+.|++++|+..+++.++.. +|...
T Consensus 108 p~~~l~~ln~~l~~~--~~~~~~T~~~~~id~~~~--~l~~~~aGh~p~~~l~~~g~~~~l~~~~~~---lG~~~----- 175 (255)
T 3f79_A 108 PSEVLAHINRGLINT--KLGKHVTMLGGVIDLEKN--SLTYSIGGHLPLPVLFVEGQAGYLEGRGLP---VGLFD----- 175 (255)
T ss_dssp HHHHHHHHHHHHBTT--BSSCCEEEEEEEEETTTT--EEEEEECSCSCCCEEEC--CEEECCC--------CCSS-----
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEEEEEECCCC--EEEEEeCCCCCceEEEeCCeEEEeCCCCce---EEEcC-----
Confidence 344455567766543 234556666666643323 789999999 56899999988889876543 55332
Q ss_pred cCCCceEEEEecCCCeEEEEEcCCCC------------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423 420 FPDPHVTEVMLHENDHFLILANKSVS------------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475 (567)
Q Consensus 420 ~~~p~v~~~~l~~~d~~lil~sDGl~------------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~ 475 (567)
..+++...+.+.++| .|+||||||| .++.+++.++ .|...+..|||||++|+..
T Consensus 176 ~~~~~~~~~~l~~gd-~lll~TDGl~e~~~~~~~~~g~~~l~~~l~~~~~~~~~~~~~l~-~~~~~~~~DDiTvl~v~~~ 253 (255)
T 3f79_A 176 DATYDDRVMELPPSF-SLSLFSDGILDVLPGATLKEKEASLPEQVAAAGGTLDGLRQVFG-LANLAEMPDDIALLVLSRN 253 (255)
T ss_dssp CCCCCC---BCCSSE-EEEEECSCCCCCSCC---CCTTTSSHHHHHHHSCSSHHHHHHC------CCSSSCEEEEEEEEC
T ss_pred CCceEEEEEEECCCC-EEEEECCCcCcccCCCcchhhHHHHHHHHHhcCCCHHHHHHHHH-hccCCCCCCCEEEEEEEec
Confidence 234566777788865 5568999999 2455666665 5677889999999999864
No 171
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Probab=98.77 E-value=2.5e-07 Score=85.75 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=91.4
Q ss_pred ceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEE
Q psy12423 303 LIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIA 382 (567)
Q Consensus 303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a 382 (567)
.+.+-|+.+.+.-+.......-..+.+.. ...|.+. ...+|+.+... .+++++.+.+.+... ++.++
T Consensus 33 ~~~v~Dv~GhG~~Aa~~s~~~~~~l~~~~--~~~p~~i----l~~ln~~l~~~-----~~~t~~~~~id~~~~--~l~~~ 99 (193)
T 3zt9_A 33 FLAVGDGIGHGPEAARAAEIAIASMESSM--NTGLVNI----FQLCHRELRGT-----RGAVAALCRVDRRQG--LWQAA 99 (193)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHHHHHHT--TSCHHHH----HHHHHHHHTTS-----SCEEEEEEEEETTTT--EEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcc--cCCHHHH----HHHHHHHHhcc-----CceEEEEEEEECCCC--EEEEE
Confidence 34556666655555444444433333321 1223333 33445555432 123444444443323 78999
Q ss_pred EecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC--------------CHH
Q psy12423 383 SVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS--------------EPV 448 (567)
Q Consensus 383 ~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------~~~ 448 (567)
+.|+.+.|++|.++..++...+. .+|.. ...+++..++++.++|.+ +|+||||+ +|+
T Consensus 100 ~aGh~~~~l~~~~~~~~l~~~~g---~lG~~-----~~~~~~~~~~~l~~gd~l-~l~sDGl~e~~~~~~~~~~~~~~~~ 170 (193)
T 3zt9_A 100 IVGNIHVKILSAKGIITPLATPG---ILGYN-----YPHQLLIAKGSYQEGDLF-LIHSDGIQEGAVPLALLANYRLTAE 170 (193)
T ss_dssp EESSCEEEEEETTEEECCCCBCC---BBTTB-----CCSSCCCEEEECCTTCEE-EEECTTSCTTCSCGGGGGCTTSCHH
T ss_pred ecCCceEEEEcCCcEEEecCCCC---ceecc-----CCccceeEEeccCCCCEE-EEECCCCCCccChhhhhchhcCCHH
Confidence 99999999999987766543221 23321 112567778888887655 58999998 789
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEE
Q psy12423 449 LAAKRIQDLAQSYGSEDNLSVLVLR 473 (567)
Q Consensus 449 ~~a~~l~~~a~~~g~~dnit~~vv~ 473 (567)
++|+.|++.| .+++||+||+|++
T Consensus 171 ~~a~~l~~~~--~~~~Dd~tvlv~r 193 (193)
T 3zt9_A 171 ELVRLIGEKY--GRRDDDVAVIVAR 193 (193)
T ss_dssp HHHHHHHHHH--CCTTSCEEEEEEC
T ss_pred HHHHHHHHHh--CcCCCCeEEEEEC
Confidence 9999999997 4689999999985
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=8.8e-07 Score=91.04 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=114.3
Q ss_pred CCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423 10 DLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN 88 (567)
Q Consensus 10 ~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 88 (567)
.+++|++ +|.++.+|+.++|..+ ++.|+...|.+.. |... . ....+...........+|+.+.
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~-l~~i-------------~-~~~~l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTK-LQSY-------------T-GMERVKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCC-CCEE-------------E-ECTTCCEECTTTTTTCCCSEEE
T ss_pred CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCC-CceE-------------E-CCceeeEeccceeccCCccccc
Confidence 3556654 6888999999999654 7788887776542 2211 0 0011111111111223677777
Q ss_pred ecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----------------cCCCCC
Q psy12423 89 LRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----------------LNGSSL 147 (567)
Q Consensus 89 Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----------------~~~~~L 147 (567)
+..+- .... .+.+. +|+.+.+..+ ++.+ .+..+..++.+.+..+...... .....+
T Consensus 120 lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 76542 2111 33332 4555544332 2222 3445556666655443322111 112223
Q ss_pred cEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCC
Q psy12423 148 ISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224 (567)
Q Consensus 148 ~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 224 (567)
..+.+.... .......+ ..+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.+....|.. +.+|+.+.+..
T Consensus 197 ~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~-~~~l~~i~l~~ 272 (379)
T 4h09_A 197 TEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN-CTALKTLNFYA 272 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT-CTTCCEEEECC
T ss_pred cccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce-eehhccccccc
Confidence 333222111 11111111 344555555432 33332 24455555555555443 45555555544 55555555543
Q ss_pred CCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279 (567)
Q Consensus 225 N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 279 (567)
+ ++.++. .+.++++|+.+.+.++.++.|+...|.++.+|+.+.|..+ ++.|+.
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 326 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV 326 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence 2 333332 3455555666666555555555555555556666555433 555544
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=1.3e-08 Score=104.03 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCCccEEECCCCCCCC-Cchhh---hCCCCCcEEEccCCCCCCCchhh----hcCCCCCcEEEccCCcCC
Q psy12423 214 LGKLHTLQLSFNRLTS-LPSLI---RQIASLKYLFLQSNSINILPQLF----LQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 214 l~~L~~L~Ls~N~l~~-lp~~~---~~l~~L~~L~Ls~N~l~~l~~~~----l~~l~~L~~L~Ls~N~l~ 275 (567)
+++|+.|+|.+|.+.. .+..+ ..+++|++|+|+.|.|+...... +..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4566666666655542 11111 23456666666666655321111 123456666666666554
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=6.6e-07 Score=92.59 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=89.0
Q ss_pred CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccE
Q psy12423 143 NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219 (567)
Q Consensus 143 ~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~ 219 (567)
.+..|+.+.+..+ +..+....+ +.+|+.+.+. +.++.|+. .|.++.+|+.+.|..+ ++.|....|.+ +.+|+.
T Consensus 263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG-CEQLER 338 (394)
T ss_dssp TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CTTCCE
T ss_pred ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC-CCCCCE
Confidence 3567888888654 344555555 7899999996 56777864 7889999999999864 88999999987 899999
Q ss_pred EECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcC
Q psy12423 220 LQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274 (567)
Q Consensus 220 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l 274 (567)
+.|..+ ++.+.. .|.++++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999754 777765 78999999999999885431 3356788899988877654
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=3.3e-06 Score=86.72 Aligned_cols=257 Identities=12% Similarity=0.147 Sum_probs=158.7
Q ss_pred CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423 1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE 79 (567)
Q Consensus 1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (567)
|+.+.|.. .++.|++ +|.++ +|+.+.+.. .++.++...|..- .|+.+ ... ..+........
T Consensus 71 L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i-------------~lp-~~~~~i~~~~F 132 (379)
T 4h09_A 71 MTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDF-------------EFP-GATTEIGNYIF 132 (379)
T ss_dssp CCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEE-------------ECC-TTCCEECTTTT
T ss_pred CCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Ccccc-------------cCC-Ccccccccccc
Confidence 56777764 4777764 67777 688888764 3667777666532 23222 000 00111111111
Q ss_pred CCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCC---------------CCcccccCcEEEcccCcccc---
Q psy12423 80 VKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESL---------------DLGALNRLESIKCSRNQLKT--- 139 (567)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~---------------~~~~l~~L~~L~ls~n~l~~--- 139 (567)
...+|+.+.+..+ ++.. ..+..+.+++.+.+..+..... .+.....+..+.+....-..
T Consensus 133 ~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (379)
T 4h09_A 133 YNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAY 211 (379)
T ss_dssp TTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTT
T ss_pred ccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeec
Confidence 1224555555433 2221 2456667777776665433221 11222334444333221110
Q ss_pred eecCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCC
Q psy12423 140 LVLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGK 216 (567)
Q Consensus 140 l~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~ 216 (567)
......+|+.+.+..+ +..+....+ +..|+.+.+..+ ++.+. ..|..+.+|+.+.+.. .+..++...|.+ +.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~-c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG-CSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT-CTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc-ccc
Confidence 0123456777776543 455555554 778999998765 66664 4678889999999864 488888888876 899
Q ss_pred ccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423 217 LHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282 (567)
Q Consensus 217 L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 282 (567)
|+.+.+.++.++.++. .|.++.+|+.+.|..+ ++.|....|.+|++|+.+.+..+ ++.|....+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 9999999888888765 6888999999999754 88999999999999999988654 666665433
No 176
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=5.5e-08 Score=89.55 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCcccEEecccC-CCC-----CcccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCC-----
Q psy12423 166 PARLQHLDISYN-ELE-----SLPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTS----- 229 (567)
Q Consensus 166 ~~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~----- 229 (567)
.++|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+.. .++|++|+|++|.|+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--NNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--CSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh--CCCcCEEECcCCcCCHHHHHH
Confidence 457888888888 776 244566777888888888888873 2222222 5788899999888885
Q ss_pred CchhhhCCCCCcEEEc--cCCCCCCCc----hhhhcCCCCCcEEEccCCcCC
Q psy12423 230 LPSLIRQIASLKYLFL--QSNSINILP----QLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 230 lp~~~~~l~~L~~L~L--s~N~l~~l~----~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
+...+...++|++|+| ++|.|+... ...+...++|+.|+|++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556677788999999 778888422 233456788999999888764
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=2.9e-07 Score=93.94 Aligned_cols=189 Identities=18% Similarity=0.195 Sum_probs=115.3
Q ss_pred CccEEEecCCCCCC-cc---------ccCCCCCccEEEccCCCCCC----------CC--CcccccCcEEEcccCc-ccc
Q psy12423 83 ELTSVNLRSNQLKG-TI---------ILGNYGNLTTLDVSENSIES----------LD--LGALNRLESIKCSRNQ-LKT 139 (567)
Q Consensus 83 ~L~~L~Ls~n~l~~-~~---------~l~~l~~L~~L~L~~n~l~~----------~~--~~~l~~L~~L~ls~n~-l~~ 139 (567)
.++.|.+....+.+ .. .+..+++|+.|.+..+.... +. +..+++|+.|.+++|. +.-
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 56777777665442 11 23456789999887654321 10 2456788899888773 221
Q ss_pred eecCCCCCcEEEcCCCccccccCCC----CCCcccEEeccc--CC------CCCccccc--CCCcCCcEEECcCCCCCC-
Q psy12423 140 LVLNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISY--NE------LESLPDWI--DTCPELETIFASHNRITQ- 204 (567)
Q Consensus 140 l~~~~~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~Ls~--n~------l~~lp~~l--~~l~~L~~L~Ls~N~l~~- 204 (567)
.....++|+.|.+..+.++...... .+++|+.|+|+. |. +..+...+ ..+++|+.|+|.+|.+..
T Consensus 188 ~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp CSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred ccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 1124678888888887765433211 257888888753 11 21222223 247888999988888763
Q ss_pred CChhhhh-ccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchhhhcC-CCCCcEEEccCCc
Q psy12423 205 LPSQFFC-RELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQLFLQN-SSKLKVLNISKNC 273 (567)
Q Consensus 205 l~~~~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~-l~~L~~L~Ls~N~ 273 (567)
.+..++. ..+++|++|+|+.|.|+. ++..+..+++|+.|+|++|.|+......+.. + ...+++++|+
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2222221 126788899998888875 3344456788889999888877443333332 2 3567888776
No 178
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=2.1e-07 Score=85.64 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCcccEEecccCCCCC-----cccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEEC--CCCCCCC----
Q psy12423 166 PARLQHLDISYNELES-----LPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQL--SFNRLTS---- 229 (567)
Q Consensus 166 ~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L--s~N~l~~---- 229 (567)
.++|++|+|++|.|.. +...+...++|++|+|++|.|+. +...+.. .++|++|+| ++|.|+.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHh--CCCceEEEecCCCCCCCHHHHH
Confidence 3567777777777762 34455566778888888888874 2222222 567888888 7788874
Q ss_pred -CchhhhCCCCCcEEEccCCCCC
Q psy12423 230 -LPSLIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 230 -lp~~~~~l~~L~~L~Ls~N~l~ 251 (567)
+...+...++|++|+|++|.|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 4455667788899999888875
No 179
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=9.7e-07 Score=85.64 Aligned_cols=80 Identities=29% Similarity=0.347 Sum_probs=45.5
Q ss_pred CCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCCCchhhhCCC--CCcEEEccCCCCCC-Cc------h
Q psy12423 187 DTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTSLPSLIRQIA--SLKYLFLQSNSINI-LP------Q 255 (567)
Q Consensus 187 ~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~--~L~~L~Ls~N~l~~-l~------~ 255 (567)
..+++|+.|+|++|+|+.++. ..+.. +++|+.|+|++|+|+++.. +..++ +|++|+|++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345667777777777665542 22222 6677777777777766522 22233 66777777776653 32 1
Q ss_pred hhhcCCCCCcEEE
Q psy12423 256 LFLQNSSKLKVLN 268 (567)
Q Consensus 256 ~~l~~l~~L~~L~ 268 (567)
.++..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345666666654
No 180
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=4.8e-06 Score=80.74 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=66.1
Q ss_pred cCCCcCCcE--EECcCCCCCCCChh---hhhccCCCccEEECCCCCCCCCc---hhhhCCCCCcEEEccCCCCCCCch-h
Q psy12423 186 IDTCPELET--IFASHNRITQLPSQ---FFCRELGKLHTLQLSFNRLTSLP---SLIRQIASLKYLFLQSNSINILPQ-L 256 (567)
Q Consensus 186 l~~l~~L~~--L~Ls~N~l~~l~~~---~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~~l~~-~ 256 (567)
+...+.|.. ++++.|....++.. +... +++|+.|+|++|+|++++ ..+..+++|+.|+|++|.|+++.. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~-l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHH-CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhh-CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 333445554 66777765544331 2222 889999999999999865 566789999999999999998733 2
Q ss_pred hhcCCCCCcEEEccCCcCC-CCC
Q psy12423 257 FLQNSSKLKVLNISKNCLK-MLP 278 (567)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~-~ip 278 (567)
.+..+ +|++|+|++|++. .+|
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCS
T ss_pred hcccC-CcceEEccCCcCccccC
Confidence 23334 9999999999997 455
No 181
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=6.4e-05 Score=69.04 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=57.7
Q ss_pred CcccEEecccC-CCC-----CcccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCC-----C
Q psy12423 167 ARLQHLDISYN-ELE-----SLPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTS-----L 230 (567)
Q Consensus 167 ~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~-----l 230 (567)
+.|+.|+|++| .|. .+...+..-+.|+.|+|++|.|.. |...+.. -+.|+.|+|+.|.|.. +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~--N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET--SPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH--CSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc--CCccCeEecCCCcCCHHHHHHH
Confidence 35666666664 555 234455566677777777777762 2222222 4567777777777763 3
Q ss_pred chhhhCCCCCcEEEccCCCC---CCC----chhhhcCCCCCcEEEccCC
Q psy12423 231 PSLIRQIASLKYLFLQSNSI---NIL----PQLFLQNSSKLKVLNISKN 272 (567)
Q Consensus 231 p~~~~~l~~L~~L~Ls~N~l---~~l----~~~~l~~l~~L~~L~Ls~N 272 (567)
-..+...+.|++|+|++|.. ..- ....+...+.|+.|+++.|
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33445556677777765433 211 1123445566677766654
No 182
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.62 E-value=0.0014 Score=67.41 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=86.8
Q ss_pred eeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEE
Q psy12423 304 IGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIAS 383 (567)
Q Consensus 304 ~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~ 383 (567)
+.+.|..+.+.-+......+-..+.........+.+.+ ..+|+.+ .. ...+..++++++.+.+... .+.+++
T Consensus 67 ~~v~Dv~GhGv~AA~~~~~~~~~l~~~~~~~~~p~~il----~~ln~~~-~~-~~~~~~~t~~~~~id~~~~--~l~~~~ 138 (399)
T 3ke6_A 67 LVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEAL----EAVDRFH-KQ-VPGSKSATMCVGSLDFTSG--EFQYCT 138 (399)
T ss_dssp EEEEECSSCSHHHHHHHHHHHHHHHHHHHTTCCHHHHH----HHHHHHG-GG-STTCTTCEEEEEEEETTTC--EEEEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH----HHHHHHH-Hh-cCCCcEEEEEEEEEECCCC--EEEEEC
Confidence 44556555444444444444443433222222333333 2334422 21 2233445555555544333 789999
Q ss_pred ecCceEEEEe-CCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCCC----------------
Q psy12423 384 VGEAKAILCR-QAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSE---------------- 446 (567)
Q Consensus 384 ~Gdsr~~l~r-~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~~---------------- 446 (567)
.|....|++| +|....+..++.. .+|. ....+...+.+.++|.+ +|+||||++
T Consensus 139 aGh~~~~l~~~~g~~~~l~~~~~~--plG~-------~~~~~~~~~~l~~Gd~l-~l~TDGl~e~~~~~~~~g~~~l~~~ 208 (399)
T 3ke6_A 139 AGHPPPLLVTADASARYVEPTGAG--PLGS-------GTGFPVRSEVLNIGDAI-LFYTDGLIERPGRPLEASTAEFADL 208 (399)
T ss_dssp ESSCCCEEECTTSCEEECCCCSCC--CTTS-------SCCCCCEEEECCTTCEE-EEECTTTTSCTTCCHHHHHHHHHHH
T ss_pred CCCChhEEEeCCCCEEEeecCCCc--ceEC-------CCCceeEEEEECCCCEE-EEECCCcccCCCCCcchhHHHHHHH
Confidence 9999999999 5656667655432 3453 22455677888887655 589999981
Q ss_pred ---------------HHHHHHHHHHHHHH-----cCCCCCcEEEEEEeC
Q psy12423 447 ---------------PVLAAKRIQDLAQS-----YGSEDNLSVLVLRFQ 475 (567)
Q Consensus 447 ---------------~~~~a~~l~~~a~~-----~g~~dnit~~vv~~~ 475 (567)
|...++.+++.+++ .+..|+|||+++++.
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~DDitvl~vr~~ 257 (399)
T 3ke6_A 209 AASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRR 257 (399)
T ss_dssp HHHHTC----------CCHHHHHHHHHHHHHHHTTCCSSCEEEEEEEEC
T ss_pred HHHhhcccccccccChhhHHHHHHHHHHHHhccCCCCCCceEEEEEEee
Confidence 11123445555543 457899999999986
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=5.7e-05 Score=68.04 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=50.7
Q ss_pred CcccEEecccCCCCCc-ccccCCCcCCcEEECcCCC-CCCCChhhhhc---cCCCccEEECCCCC-CCC--CchhhhCCC
Q psy12423 167 ARLQHLDISYNELESL-PDWIDTCPELETIFASHNR-ITQLPSQFFCR---ELGKLHTLQLSFNR-LTS--LPSLIRQIA 238 (567)
Q Consensus 167 ~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~---~l~~L~~L~Ls~N~-l~~--lp~~~~~l~ 238 (567)
..|+.||+++|.++.. -..+..+++|++|+|++|. |+.-....... ..++|++|+|++|. |+. + ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 3678888888877632 2345677788888888774 65322222211 01357777777763 664 2 2345667
Q ss_pred CCcEEEccCCC-CCC
Q psy12423 239 SLKYLFLQSNS-INI 252 (567)
Q Consensus 239 ~L~~L~Ls~N~-l~~ 252 (567)
+|+.|+|++|. |+.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 77777777763 553
No 184
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00028 Score=60.46 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=35.3
Q ss_pred EEECCCCCCC--CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423 219 TLQLSFNRLT--SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275 (567)
Q Consensus 219 ~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~ 275 (567)
.++.+++.++ .+|..+ .++|++|+|++|+|+.++...|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 566432 235667777777777777776777777777777776543
No 185
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=8.6e-05 Score=68.17 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=48.7
Q ss_pred CcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCCC-----hhhhhccCCCccEEECCCCC---CCC----
Q psy12423 167 ARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQLP-----SQFFCRELGKLHTLQLSFNR---LTS---- 229 (567)
Q Consensus 167 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~---l~~---- 229 (567)
..|+.|+|++|.|. .|...+..-+.|++|+|++|.|+.-. ..+.. ...|++|+|++|. +..
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~--N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLV--TQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTT--TCCCSEEECCCCSSCCCCHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhh--CCceeEEECCCCcCcCcCHHHHH
Confidence 45667777777666 33444555567777777777776321 11111 3467777777543 331
Q ss_pred -CchhhhCCCCCcEEEccCCCCC
Q psy12423 230 -LPSLIRQIASLKYLFLQSNSIN 251 (567)
Q Consensus 230 -lp~~~~~l~~L~~L~Ls~N~l~ 251 (567)
+...+...+.|+.|+++.|.+.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhCCCcCeEeccCCCcc
Confidence 3344566677888888766543
No 186
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.0013 Score=56.25 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=24.5
Q ss_pred EEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423 171 HLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227 (567)
Q Consensus 171 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 227 (567)
.++.+++.++ .+|..+ .++|+.|+|++|+|+.++...|.. +++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~-l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDA-LPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGG-CTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhh-ccccCEEEecCCCe
Confidence 4444555554 444322 123445555555555554444443 44444444444433
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.87 E-value=0.0008 Score=60.50 Aligned_cols=58 Identities=5% Similarity=0.046 Sum_probs=41.2
Q ss_pred CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCC-CCCCC---Ccc----cccCcEEEcccCc-ccc
Q psy12423 82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENS-IESLD---LGA----LNRLESIKCSRNQ-LKT 139 (567)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~---~~~----l~~L~~L~ls~n~-l~~ 139 (567)
..|+.||++++.++... .+..+++|+.|+|++|. |++.. +.. .++|++|++++|. +++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 47899999999887543 67788999999999985 66533 333 2357777777763 543
No 188
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=95.21 E-value=0.12 Score=52.57 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=63.3
Q ss_pred HHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecCce-EEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCce
Q psy12423 347 TAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAK-AILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHV 425 (567)
Q Consensus 347 ~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr-~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v 425 (567)
.+|+.+... ..+...+++.+...+... .+..++.|-.- .|+.++|+...+... ...+|... ....+.
T Consensus 253 ~ln~~l~~~--~~~~~~t~~~~~~d~~~~--~l~~~~aGh~p~~~~~~~g~~~~l~~~---~~plG~~~-----~~~~~~ 320 (394)
T 3eq2_A 253 HINRGLINT--KLGKHVTMLGGVIDLEKN--SLTYSIGGHLPLPVLFVEGQAGYLEGR---GLPVGLFD-----DATYDD 320 (394)
T ss_dssp HHHHHHHHT--TCCCCEEEEEEEEETTTT--EEEEEECSSSCCCEEEETTEEEECCCC-----CCSCCC-----CC--CC
T ss_pred HHHHHHhcc--CcCcEEEEEEEEEECCCC--EEEEEcCCCCCCcEEecCCceEecCCC---CceeEecC-----CCceEE
Confidence 445555432 223334555555554333 78899999744 677788887777532 23355332 123455
Q ss_pred EEEEecCCCeEEEEEcCCCCCH--------------------HHHHHHHHHHHHHc---CCCCCcEEEEEEeC
Q psy12423 426 TEVMLHENDHFLILANKSVSEP--------------------VLAAKRIQDLAQSY---GSEDNLSVLVLRFQ 475 (567)
Q Consensus 426 ~~~~l~~~d~~lil~sDGl~~~--------------------~~~a~~l~~~a~~~---g~~dnit~~vv~~~ 475 (567)
.++.+.++|. |++.|||+.+. ....+.+.+..... ...|+||+++++.+
T Consensus 321 ~~~~l~~gd~-l~l~TDG~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~DDit~l~i~~~ 392 (394)
T 3eq2_A 321 RVMELPPSFS-LSLFSDGILDVLPGATLKEKEASLPEQVAAAGGTLDGLRQVFGLANLAEMPDDIALLVLSRN 392 (394)
T ss_dssp EEEECCSSCE-EEECSSCCCC-----CCSTTTTTSHHHHHTTC--CHHHHHHHSCCCSCC--CCCEEEEEC--
T ss_pred EEEEeCCCCE-EEEECCCcccccCcccchhhHHHHHHHHHhcchhHHHHHHHhcccCCCCCCCceEEEEEecc
Confidence 6778888765 55899999811 11123344433332 23699999999864
No 189
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.85 E-value=20 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCC
Q psy12423 226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272 (567)
Q Consensus 226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N 272 (567)
.++.|.. .|.++.+|+.+.|-.+ ++.|....|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3444433 4666777777777653 66777777777888887777654
No 190
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=27.58 E-value=83 Score=25.14 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=39.4
Q ss_pred eEEEEecCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCcE-----------EEEEEeCCCCcChhhHHHHHhhh
Q psy12423 425 VTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLS-----------VLVLRFQGSEFDSRTRDAKLSSM 491 (567)
Q Consensus 425 v~~~~l~~~d~~lil~sDGl~~~~~~a~~l~~~a~~~g~~dnit-----------~~vv~~~~~~~~~~~~~~~~~~~ 491 (567)
...+.++.+|-.+ ---|+ |+++-+.|...|......=||+ |++++|.+.|++...+.++.-++
T Consensus 33 tvtytl~gn~l~i--~itgv--peqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 33 TVTYTLSGNRLVI--VITGV--PEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp EEEEEEETTEEEE--EEESC--CHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCEEEE--EEeCC--cHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 3456677654333 33566 6776666666665432222332 57888899999988887777554
No 191
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.67 E-value=63 Score=25.24 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.1
Q ss_pred cCCCcCCcEEEC
Q psy12423 186 IDTCPELETIFA 197 (567)
Q Consensus 186 l~~l~~L~~L~L 197 (567)
|.++.+|+.+.|
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 444444444444
Done!