RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12423
(567 letters)
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 72.8 bits (179), Expect = 2e-14
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 58/229 (25%)
Query: 295 PGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEE----RTVKETASDYMKYTMLTAH 349
P +S G+FD G G A+ + +P IL EE + E + ++ L+
Sbjct: 31 PDLSDSGGFFGVFD-GHGGSEAAKFLSKNLPEILAEELIKEKDELEDVEEALRKAFLSTD 89
Query: 350 REIKDSLHRYSLS-ATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS--LTFTHAPTL 406
EI + L S S A + + L++A+VG+++A+LCR + LT H P+
Sbjct: 90 EEILEELEALSGSTAVVALI------SGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSN 143
Query: 407 S---------PPVPPQGSCPLSF----------------PDPHVTEVMLHENDHFLILAN 441
G +P VT V L E D FLILA+
Sbjct: 144 EDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILAS 203
Query: 442 KSVSE------------------PVLAAKRIQDLAQSYGSEDNLSVLVL 472
+ + P AAKR+ DLA + GS+DN++V+V+
Sbjct: 204 DGLWDVLSNQEVVDIVRKHLSKDPKEAAKRLIDLALARGSKDNITVVVV 252
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 70.0 bits (172), Expect = 2e-13
Identities = 56/235 (23%), Positives = 84/235 (35%), Gaps = 65/235 (27%)
Query: 298 CNSDALIGIFDSGDNGDIASTLVQSI-PRILLEE-----RTVKETASDYMKYTMLTAHRE 351
L G+FD G G A + LLEE +E + ++ L A E
Sbjct: 27 NEDGGLFGVFD-GHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEE 85
Query: 352 IKDSLHRYSLS------ATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS--LTFTHA 403
I + A + + L++A+VG+++A+LCR + LT H
Sbjct: 86 ILEEAQDEPDDARSGTTAVVALI------RGNKLYVANVGDSRAVLCRNGEAVQLTKDHK 139
Query: 404 PT--------------LSPPVPPQGSC-----------PLSFPDPHVTEVMLHENDHFLI 438
P +S P P +P VT V L E+D FLI
Sbjct: 140 PVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLI 199
Query: 439 LA-------------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474
LA + + AA+ + DLA GS DN++V+V+R
Sbjct: 200 LASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVVVRL 254
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 63.3 bits (153), Expect = 2e-10
Identities = 59/153 (38%), Positives = 79/153 (51%), Gaps = 19/153 (12%)
Query: 127 LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI 186
L+ + S NQL +L S L + A NN+L SL P+ LQ L +S N+L SLP
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PTLPSGLQELSVSDNQLASLP--- 358
Query: 187 DTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
T P EL ++A +NR+T LP+ L L +S NRLTSLP L + LK L +
Sbjct: 359 -TLPSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVLPSE---LKELMV 409
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N + LP L S L L++ +N L LP
Sbjct: 410 SGNRLTSLPML----PSGLLSLSVYRNQLTRLP 438
Score = 46.7 bits (110), Expect = 3e-05
Identities = 72/265 (27%), Positives = 108/265 (40%), Gaps = 60/265 (22%)
Query: 9 NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAEEREEDFEQ 66
N+LT P P L+ L + N+++ LPV +S +N + H
Sbjct: 232 NNLTSLPALP---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------------ 276
Query: 67 DEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL------- 119
P + L + + NQL +L L L VS+N + SL
Sbjct: 277 ----------LPALPSGLCKLWIFGNQLTSLPVLPP--GLQELSVSDNQLASLPALPSEL 324
Query: 120 -DLGALNR-----------LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
L A N L+ + S NQL +L S L + A NN+L SL P+
Sbjct: 325 CKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL--PALPS 382
Query: 168 RLQHLDISYNELESLPDWIDTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
L+ L +S N L SLP P EL+ + S NR+T LP L +L + N+
Sbjct: 383 GLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQ 433
Query: 227 LTSLPSLIRQIASLKYLFLQSNSIN 251
LT LP + ++S + L+ N ++
Sbjct: 434 LTRLPESLIHLSSETTVNLEGNPLS 458
Score = 41.7 bits (97), Expect = 0.001
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
+ + +++ +N L SL P L+ L++S N+L SLP EL +IF+ N +T
Sbjct: 222 AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLTSLPVLPPGLLEL-SIFS--NPLTH 276
Query: 205 LPS--------QFFCRELGK-------LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
LP+ F +L L L +S N+L SLP+L ++ L+ +N
Sbjct: 277 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCK---LWAYNNQ 333
Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287
+ LP L S L+ L++S N L LP+L Y L
Sbjct: 334 LTSLPTL----PSGLQELSVSDNQLASLPTLPSELYKL 367
Score = 36.7 bits (84), Expect = 0.032
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
L++ + L +LPD + + T+ N +T LP+ +L TL++S N+LTSLP
Sbjct: 206 LNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLTSLP 258
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ 291
L + L SN + LP L S L L I N L LP L G L++S
Sbjct: 259 VLPPGLLELSIF---SNPLTHLPAL----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 311
Query: 292 LRL 294
+L
Sbjct: 312 NQL 314
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 60.4 bits (146), Expect = 1e-09
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 81 KGELTSVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQL 137
K L ++L N+++ L N NL LD+S N + L L L+ L ++ S N++
Sbjct: 139 KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198
Query: 138 KTL--VLNGSSLISVI--AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELE 193
L + S + + + N+ ++ L L L++S N+LE LP+ I LE
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258
Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL 253
T+ S+N+I+ + S L L L LS N L++ LI + L L L
Sbjct: 259 TLDLSNNQISSISSLG---SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315
Query: 254 PQLFLQNSSKLKVLNISKN 272
L L+ +S L NI N
Sbjct: 316 --LELKLNSILLNNNILSN 332
Score = 40.0 bits (93), Expect = 0.003
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 36/262 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+E + N + P + P LK L + N +S LP L +S LNN+ G
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSG----- 195
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESL 119
+ I E E+ L ++L +N + + L N NL+ L++S N +E L
Sbjct: 196 --------NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL 247
Query: 120 D--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS------PRPARLQH 171
+G L+ LE++ S NQ+ + IS + L+ L +S P
Sbjct: 248 PESIGNLSNLETLDLSNNQISS--------ISSLGSLTNLRELDLSGNSLSNALPLIALL 299
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
L + L L +L +I ++N I + ++ S N L +L
Sbjct: 300 LLLLELLLNLLLTLKALELKLNSILLNNN-ILSNGE----TSSPEALSILESLNNLWTLD 354
Query: 232 SLIRQIASLKYLFLQSNSINIL 253
+ + + +Y+ N+I L
Sbjct: 355 NALDESNLNRYIVKNPNAIGSL 376
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 55.2 bits (133), Expect = 7e-08
Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 52/309 (16%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSEN--------------SIESLDLGA------ 123
L +NL +N G+I G+ NL TLD+S N S++ LDLG
Sbjct: 120 LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179
Query: 124 -------LNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNKLQSLIVSP--RPARLQ 170
L LE + + NQL + SL + G N L I L
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239
Query: 171 HLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT 228
HLD+ YN L +P + L+ +F N+++ +P F L KL +L LS N L+
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLS 297
Query: 229 -SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPS---LQKG 283
+P L+ Q+ +L+ L L SN+ + L + +L+VL + N +P
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357
Query: 284 FYLLNISQLRLPG-----FCNSDALIG--IFDSGDNGDIASTL--VQSIPRILLEERTVK 334
+L++S L G C+S L +F + G+I +L +S+ R+ L++ +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417
Query: 335 -ETASDYMK 342
E S++ K
Sbjct: 418 GELPSEFTK 426
Score = 43.7 bits (103), Expect = 3e-04
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 35/214 (16%)
Query: 84 LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIE-SLDLGALNRLESIKCSRN---- 135
+ ++NL +NQL G I I +L L++S N+ S+ G++ LE++ S N
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154
Query: 136 ----------QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPD 184
LK L L G+ L+ I + L +L L+ L ++ N+L +P
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNS--LTNL------TSLEFLTLASNQLVGQIPR 206
Query: 185 WIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKY 242
+ L+ I+ +N ++ ++P + L L+ L L +N LT +PS + + +L+Y
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264
Query: 243 LFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCL 274
LFL N ++ I P +F + KL L++S N L
Sbjct: 265 LFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSL 296
Score = 41.0 bits (96), Expect = 0.002
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 37/215 (17%)
Query: 84 LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
L + L SN+ G I LG + NLT LD+S N++ + CS L L+
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-------EIPEGLCSSGNLFKLI 386
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQH-------------------LDISYNELE-S 181
L +SL I K S R RLQ LDIS N L+
Sbjct: 387 LFSNSLEGEIP---KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443
Query: 182 LPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIAS 239
+ P L+ + + N+ LP F + +L L LS N+ + ++P + ++
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSK---RLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
L L L N ++ L + KL L++S N L
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
Score = 39.4 bits (92), Expect = 0.006
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 87 VNLRSNQLKGTIILGNYG--NLTTLDVSENSI--ESLDLGALNRLESIKCSRNQLKTLVL 142
+++ +N L+G I + +L L ++ N D RLE++ SRNQ V
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV- 491
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-LPDWIDTCPELETIFASHNR 201
KL SL + L L +S N+L +PD + +C +L ++ SHN+
Sbjct: 492 -----------PRKLGSL------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534
Query: 202 IT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASL 240
++ Q+P+ F E+ L L LS N+L+ +P + + SL
Sbjct: 535 LSGQIPASF--SEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 53.9 bits (129), Expect = 2e-07
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
++T++ L +N+LK ++ GN+ TL + N + S+ + ++ ++ S N++ L
Sbjct: 200 QITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPE 258
Query: 143 N-GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
S+L S+ +NK+ L P L++L + N + +LP + + + + N
Sbjct: 259 RLPSALQSLDLFHNKISCL-PENLPEELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNS 315
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
+T LP L TL+ N LTSLP+ + L+ L + N I +LP+
Sbjct: 316 LTALPETL----PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL---P 366
Query: 262 SKLKVLNISKNCLKMLP 278
+ L++S+N L LP
Sbjct: 367 PTITTLDVSRNALTNLP 383
Score = 41.2 bits (96), Expect = 0.002
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+QE + N +TE P S L+ L N+IS LP L + L+ V ++ I
Sbjct: 243 IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEELRYLS-VYDNSI---- 295
Query: 61 EEDFEQDEDGIIVERREPE-VKGELTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSI 116
R P + +T +N++SN L T+ L TL+ EN++
Sbjct: 296 --------------RTLPAHLPSGITHLNVQSNSLTALPETLPP----GLKTLEAGENAL 337
Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
SL L+ + S+NQ+ L I+ + + + + PA LQ + S
Sbjct: 338 TSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASR 397
Query: 177 NEL----ESLPDWIDTCPELETIFASHNRITQ 204
N L ESLP + P+ I +N ++
Sbjct: 398 NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 48.5 bits (116), Expect = 3e-06
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 54/141 (38%)
Query: 379 LHIASVGEAKAILCRQAGS---LTFTHAPTL------------SPPVP------------ 411
L++A+VG+++A+LCR + LT H P+
Sbjct: 112 LYVANVGDSRAVLCRNGNAIKQLTEDHKPSNEDERRRIRGAGGFVSRNGRVNGVLAVSRA 171
Query: 412 -------PQGSCPLSFPDPHVTEVMLHENDHFLILA-------------------NKSVS 445
P+S +P VT + E+D FLILA S
Sbjct: 172 FGDFELKKGKPQPVS-AEPDVTSHKITESDEFLILASDGLWDVLSDQEVVDIVRSELSDG 230
Query: 446 EPVLAAKRIQDLAQSYGSEDN 466
P+ AA+++ D A +YGSEDN
Sbjct: 231 SPMEAAEKLVDEAIAYGSEDN 251
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 46.2 bits (110), Expect = 2e-05
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 48/228 (21%)
Query: 299 NSDALIGIFD--SGDN-GDIAS-TLVQSIPRILLEERTVKETAS--DYMKYTMLTAHREI 352
N L + D G G++AS V+++ R+ E S + +K +L A+ I
Sbjct: 36 NLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAI 95
Query: 353 -KDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLSPP 409
++ + L L + L++A+VG+++A L R + LT H +L
Sbjct: 96 AEEGQLNEDVRGMGTTLVL-LLIRGNKLYVANVGDSRAYLLRDGELKQLTEDH--SLVNR 152
Query: 410 VPPQGSCP-------------------LSFPDPHVTEVMLHENDHFLILAN--------- 441
+ +G +P +TE+ L D FL+L +
Sbjct: 153 LEQRGIITPEEARSHPRRNALTRALGDFDLLEPDITELELEPGD-FLLLCSDGLWDVVSD 211
Query: 442 -------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSR 482
K+ P AA ++ +LA G DN++V+++R G SR
Sbjct: 212 DEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLVRLNGEGETSR 259
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 40.6 bits (96), Expect = 6e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSI 250
L+++ S+NR+T +P F + L L L LS N LTS+ + SL+ L L N++
Sbjct: 2 LKSLDLSNNRLTVIPDGAF-KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.2 bits (95), Expect = 8e-05
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 216 KLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
L +L LS NRLT +P + + +LK L L N++ + L+ L++S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 39.1 bits (92), Expect = 3e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 168 RLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
L+ LD+S N L +PD P L+ + S N +T + + F L L +L LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF-SGLPSLRSLDLSGNN 59
Query: 227 L 227
L
Sbjct: 60 L 60
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+LK L L +N + ++P + LKVL++S N L +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP 41
Score = 36.0 bits (84), Expect = 0.003
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 84 LTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
L S++L +N+L NL LD+S N++ S+ A L L S+ S N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.6 bits (83), Expect = 0.004
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
NL +LD+S N + + GA L + LK L L+G++L S+ L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPN-------LKVLDLSGNNLTSISP--EAFSGL---- 47
Query: 165 RPARLQHLDISYNEL 179
L+ LD+S N L
Sbjct: 48 --PSLRSLDLSGNNL 60
Score = 35.6 bits (83), Expect = 0.004
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 146 SLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRI 202
+L S+ NN+L + L+ LD+S N L S+ P+ P L ++ S N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
L+ LD+S N++ LP + P LET+ S N+IT L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 34.8 bits (81), Expect = 0.005
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
+L+ L L +N I LP L N L+ L++S N + L L
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL 256
L TL LS N++T LP L + +L+ L L N I L L
Sbjct: 2 NLETLDLSNNQITDLPPL-SNLPNLETLDLSGNKITDLSPL 41
Score = 34.0 bits (79), Expect = 0.009
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
LET+ S+N+IT LP L L TL LS N++T L L
Sbjct: 1 TNLETLDLSNNQITDLPP---LSNLPNLETLDLSGNKITDLSPL 41
Score = 34.0 bits (79), Expect = 0.009
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 105 NLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL 140
NL TLD+S N I L L L LE++ S N++ L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDL 38
Score = 31.7 bits (73), Expect = 0.068
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L +++L +NQ+ L N NL TLD+S N I L
Sbjct: 3 LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 37.9 bits (88), Expect = 0.013
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
L S+NL N ++G I LG+ +L LD+S NS +L +L S L+ L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-------LRILN 496
Query: 142 LNGSSL 147
LNG+SL
Sbjct: 497 LNGNSL 502
Score = 32.1 bits (73), Expect = 0.99
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 182 LPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIAS 239
+P+ I L++I S N I +P + L L LS+N S+P + Q+ S
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 240 LKYLFLQSNSI 250
L+ L L NS+
Sbjct: 492 LRILNLNGNSL 502
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.0 bits (81), Expect = 0.097
Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 39/226 (17%)
Query: 79 EVKGELTSVNLRSNQL----KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESI 130
+ L + L N+ +G L L LD+S+N++ G L L
Sbjct: 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS 107
Query: 131 KCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE--SLPDWI 186
+ L+ L LN + L G+ L+ L + P L+ L + N LE S
Sbjct: 108 ----SSLQELKLNNNGL-----GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158
Query: 187 DTCPE---LETIFASHNRITQLPSQFFCREL---GKLHTLQLSFNRLTS-----LPSLIR 235
L+ + ++N I + L L L L+ N LT L +
Sbjct: 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218
Query: 236 QIASLKYLFLQSNSIN------ILPQLFLQNSSKLKVLNISKNCLK 275
+ SL+ L L N++ + L N S L L++S N +
Sbjct: 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNIS-LLTLSLSCNDIT 263
Score = 28.9 bits (65), Expect = 6.6
Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 34/177 (19%)
Query: 18 QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD---EDGIIVE 74
+D P L+ L +NR+ L + + +E + + + GI
Sbjct: 133 KDLPPALEKLVLGRNRLEG------ASCEALAKALRA-NRDLKELNLANNGIGDAGIRAL 185
Query: 75 RREPEVKGELTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLE 128
+ L ++L +N L +G L + +L L++ +N++ AL
Sbjct: 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL--AS 243
Query: 129 SIKCSRNQLKTLVLNGSSLISVIAGNNKL-----QSLI-VSPRPARLQHLDISYNEL 179
++ L TL L N + + L V L LD+ N+
Sbjct: 244 ALLSPNISLLTLSL----------SCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 34.7 bits (80), Expect = 0.12
Identities = 52/232 (22%), Positives = 79/232 (34%), Gaps = 69/232 (29%)
Query: 302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSL 361
G+FD G D S + LE+ T + M+ L E DS
Sbjct: 49 GFFGVFD-GHVNDECSQYLARAWPQALEKEPEPMTD-ERMEELCLEIDEEWMDSGREGGS 106
Query: 362 SATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPT-------------- 405
+ T C + L + +VG+++ ++CR + T H P
Sbjct: 107 TGTFC-----VIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGR 161
Query: 406 -LSPPVPPQGSCPLS--FPD-------------------PHVTEVMLHENDHFLILA--- 440
+S V G +S F D P VT + ND F+ILA
Sbjct: 162 VVSNRV--DGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDG 218
Query: 441 -------NKSVSEPV-----------LAAKRIQDLAQSYGSEDNLSVLVLRF 474
N+ V V + A R+ D A GS+DN+S L+++
Sbjct: 219 VFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQL 270
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 28.0 bits (64), Expect = 0.69
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 166 PARLQHLDISYNELESLPD 184
P L+ L++S N+L SLP+
Sbjct: 1 PPSLKELNVSNNQLTSLPE 19
Score = 24.9 bits (56), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 219 TLQLSFNRLTSLPSL 233
L +S N+LTSLP L
Sbjct: 6 ELNVSNNQLTSLPEL 20
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 28.1 bits (64), Expect = 0.82
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 214 LGKLHTLQLSFNRLTSLPS 232
L L L LS N+L+SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
Score = 26.9 bits (61), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 169 LQHLDISYNELESLPDWI 186
L+ LD+S N+L SLP
Sbjct: 4 LRELDLSNNQLSSLPPGA 21
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 28.1 bits (64), Expect = 0.82
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 214 LGKLHTLQLSFNRLTSLPS 232
L L L LS N+L+SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
Score = 26.9 bits (61), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 169 LQHLDISYNELESLPDWI 186
L+ LD+S N+L SLP
Sbjct: 4 LRELDLSNNQLSSLPPGA 21
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 27.2 bits (61), Expect = 1.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 168 RLQHLDISYNELESLPDWIDTC 189
L+ LD+S N L SLP +
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 30.5 bits (70), Expect = 2.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 103 YGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS---SLISVIAGNN 155
Y LT +V E ++ +D A+ S+ N++ +V N + +L V+ G +
Sbjct: 175 YDRLTYDEVLEKGLKVMDATAI----SL-ARDNKIPIIVFNMNKPGNLKRVVKGEH 225
>gnl|CDD|107244 cd06495, p23_NUDCD3_like, p23-like NUD (nuclear distribution)
C-like domain found in human NUDC domain-containing
protein 3 (NUDCD3) and similar proteins. Little is
known about the function of the proteins in this
subgroup.
Length = 102
Score = 28.7 bits (64), Expect = 2.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 80 VKGELTSVNLRSNQLKGTIILGN------YGNLTTLDVSENSIESLDLGALNRLESIKCS 133
VKG SV+L+S+ ++ ++ G G T +ENS+ SL+ G L KCS
Sbjct: 27 VKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKCS 86
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 30.3 bits (68), Expect = 3.0
Identities = 54/242 (22%), Positives = 88/242 (36%), Gaps = 67/242 (27%)
Query: 296 GFCNSD----ALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLTAHR 350
G NS+ A G+FD G G A+ +PR ++E+ + L
Sbjct: 94 GLKNSEDGPSAFYGVFD-GHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDT 152
Query: 351 EIKDSLHRYSLSATLCH--LSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFT--HAPTL 406
++ SL A+L +L + L +A+ G+ +A+LCR+ ++ + H P
Sbjct: 153 AFAEAC---SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMC 209
Query: 407 SPPVPPQGSC---------------------------------PLSFPDPHVTEVMLHEN 433
S + PLS +P + L E
Sbjct: 210 SKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLS-AEPELMTTQLTEE 268
Query: 434 DHFLIL-----------------ANKSVSE---PVLAAKRIQDLAQSYGSEDNLSVLVLR 473
D FLI+ A + + E PV+ +K + D A S DNL+V+V+
Sbjct: 269 DEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVC 328
Query: 474 FQ 475
FQ
Sbjct: 329 FQ 330
>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis. Regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinases of E.
coli (Ec) and Pyrococcus furiosus (Pf) are known to
function as homohexamers, with GTP and UTP being
allosteric effectors. Like other related enzymes
(carbamate kinase, aspartokinase, and N-acetylglutamate
kinase) the E. coli and most bacterial UMPKs have a
conserved, N-terminal, lysine residue proposed to
function in the catalysis of the phosphoryl group
transfer, whereas most archaeal UMPKs appear to lack
this residue and the Pyrococcus furiosus structure has
an additional Mg ion bound to the ATP molecule which is
proposed to function as the catalysis instead. Also
included in this CD are the alpha and beta subunits of
the Mo storage protein (MosA and MosB) characterized as
an alpha4-beta4 octamer containing an ATP-dependent,
polynuclear molybdenum-oxide cluster. These and related
sequences in this CD are members of the Amino Acid
Kinase Superfamily (AAK).
Length = 229
Score = 29.8 bits (68), Expect = 3.1
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 103 YGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS---SLISVIAGNNK 156
Y ++ ++ + ++ +D AL C RN++ +V NG +L+ + G +
Sbjct: 173 YDRISYDELLKKGLKVMDATALTL-----CRRNKIPIIVFNGLKPGNLLRALKGEHV 224
>gnl|CDD|144538 pfam00981, Rota_NS53, Rotavirus RNA-binding Protein 53 (NS53).
This protein is also known as NSP1. NS53 is encoded by
gene 5. It is made in low levels in the infected cells
and is a component of early replication. The protein is
known to accumulate on the cytoskeleton of the infected
cell. NS53 is an RNA binding protein that contains a
characteristic cysteine rich region.
Length = 488
Score = 30.0 bits (68), Expect = 3.4
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 200 NRITQLPSQF--FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN-ILPQL 256
Q P +F KL ++F+R++ LP ++Q +L+Y F +S I+ L Q+
Sbjct: 165 ENENQTPFRFVNLIDIYDKLLLDDINFDRMSFLPVSLQQEYALRY-FSKSRFISEKLKQI 223
Query: 257 FLQNSSKLKVLN---------ISKNCLKM 276
+ + SK + N +++NC +M
Sbjct: 224 YYSDFSKNTLENLHNPTSKRQVTRNCTEM 252
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 29.2 bits (66), Expect = 4.3
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 21/88 (23%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSR-----------NQLKTLVLNGSSL 147
IL G +T ++S+ + + L LE C N+LK L+L GS L
Sbjct: 7 ILHKLGQITQSNISQ--LLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKL 64
Query: 148 ISVIAGNNKLQSLIVS-PRPARLQHLDI 174
I + L +L S P LQ LD+
Sbjct: 65 ID----DEGLIALAQSCP---NLQVLDL 85
>gnl|CDD|219561 pfam07763, FEZ, FEZ-like protein. This is a family of eukaryotic
proteins thought to be involved in axonal outgrowth and
fasciculation. The N-terminal regions of these sequences
are less conserved than the C-terminal regions, and are
highly acidic. The C. elegans homolog, UNC-76, may play
structural and signalling roles in the control of axonal
extension and adhesion (particularly in the presence of
adjacent neuronal cells) and these roles have also been
postulated for other FEZ family proteins. Certain
homologs have been definitively found to interact with
the N-terminal variable region (V1) of PKC-zeta, and
this interaction causes cytoplasmic translocation of the
FEZ family protein in mammalian neuronal cells. The
C-terminal region probably participates in the
association with the regulatory domain of PKC-zeta. The
members of this family are predicted to form coiled-coil
structures, which may interact with members of the RhoA
family of signalling proteins, but are not thought to
contain other characteristic protein motifs. Certain
members of this family are expressed almost exclusively
in the brain, whereas others (such as FEZ2) are
expressed in other tissues, and are thought to perform
similar but unknown functions in these tissues.
Length = 244
Score = 29.0 bits (65), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+ NYGN+ +D + SL L LN ++ S ++L
Sbjct: 48 LTDNYGNIMPVDWKTSHTRSLHLPTLNLGDNGNTSDSELDE 88
>gnl|CDD|220292 pfam09563, RE_LlaJI, LlaJI restriction endonuclease. This family
includes the LlaJI (recognises GACGC) restriction
endonucleases.
Length = 368
Score = 28.9 bits (65), Expect = 8.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 44 PMSPLNNVIE----HGIAEEREEDFEQDEDGII 72
P+S +IE +G E E +E ++ G I
Sbjct: 65 PLSAYLFLIEDYSENGYYTEDETIYEINQKGRI 97
>gnl|CDD|132800 cd06890, PX_Bem1p, The phosphoinositide binding Phox Homology
domain of Bem1p. The PX domain is a phosphoinositide
(PI) binding module present in many proteins with
diverse functions such as cell signaling, vesicular
trafficking, protein sorting, and lipid modification,
among others. Members of this subfamily bear similarity
to Saccharomyces cerevisiae Bem1p, containing two Src
Homology 3 (SH3) domains at the N-terminus, a central PX
domain, and a C-terminal PB1 domain. Bem1p is a
scaffolding protein that is critical for proper Cdc42p
activation during bud formation in yeast. During budding
and mating, Bem1p migrates to the plasma membrane where
it can serve as an adaptor for Cdc42p and some other
proteins. Bem1p also functions as an effector of the G1
cyclin Cln3p and the cyclin-dependent kinase Cdc28p in
promoting vacuolar fusion. The PX domain is involved in
targeting of proteins to PI-enriched membranes, and may
also be involved in protein-protein interaction. The PX
domain of Bem1p specifically binds
phosphatidylinositol-4-phosphate (PI4P).
Length = 112
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 168 RLQHLDISYNELESLPDWIDTCPELETIFA 197
RL L+ NEL +LP +I T + FA
Sbjct: 81 RLNDLNEYLNELINLPAYIQTSEVVRDFFA 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,817,826
Number of extensions: 2674447
Number of successful extensions: 2275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2188
Number of HSP's successfully gapped: 79
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.3 bits)