RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12423
(567 letters)
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 137 bits (347), Expect = 2e-35
Identities = 77/283 (27%), Positives = 109/283 (38%), Gaps = 43/283 (15%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ N LTE P S L + +S LP L + + NN +E
Sbjct: 93 LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY-LGVSNNQLEK------ 145
Query: 61 EEDFEQDEDGIIVERREPEVKG--ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
PE++ L +++ +N L + +L + N +E
Sbjct: 146 ----------------LPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEE 187
Query: 119 L-DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
L +L L L +I N LK L SL S++AGNN L+ L L + N
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
L++LPD P LE + N +T LP L L +S N + L L
Sbjct: 248 LLKTLPDLP---PSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSEL---P 296
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
+L YL SN I L L L+ LN+S N L LP+L
Sbjct: 297 PNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIELPAL 335
Score = 122 bits (308), Expect = 3e-30
Identities = 72/294 (24%), Positives = 111/294 (37%), Gaps = 37/294 (12%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
LQE ++LTE P ++ A + G E+R
Sbjct: 13 LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN--------------APPGNGEQR 58
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
E + D + + + L + L + + +L +L S NS+ L
Sbjct: 59 EMAVSRLRDCL---------DRQAHELELNNLGL--SSLPELPPHLESLVASCNSLTELP 107
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
L+S+ N LK L L + NN+L+ L + L+ +D+ N L+
Sbjct: 108 -ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
LPD P LE I A +N++ +LP + L L + N L LP L SL
Sbjct: 167 KLPDLP---PSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKLPDL---PLSL 217
Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ + +N + LP+ LQN L + N LK LP L LN+ L
Sbjct: 218 ESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 269
Score = 120 bits (304), Expect = 1e-29
Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 50/309 (16%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ VD N L + P D P L+F++A N++ LP L +
Sbjct: 155 LKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPEL-----QNLPFLTAIYADNNS 206
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
+ P++ L S+ +N L+ L N LTT+ N +++L
Sbjct: 207 LKKL-------------PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
LE++ N L L SL + N L S P L +L+ S NE+
Sbjct: 254 DL-PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIR 310
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
SL D P LE + S+N++ +LP+ +L L SFN L +P L +L
Sbjct: 311 SLCDLP---PSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPELP---QNL 359
Query: 241 KYLFLQSNSINILP-------QLFLQNS--------SKLKVLNISKNCLKMLPSLQKGFY 285
K L ++ N + P L + + LK L++ N L+ P + +
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419
Query: 286 LLNISQLRL 294
L ++ R+
Sbjct: 420 DLRMNSERV 428
Score = 110 bits (278), Expect = 3e-26
Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 74/297 (24%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L D N L + P D L+ + A N + LP L
Sbjct: 197 LTAIYADNNSLKKLP---DLPLSLESIVAGNNILEELPEL-----QNLPF---------- 238
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT++ +N L + +L L+V +N + L
Sbjct: 239 -----------------------LTTIYADNNLL--KTLPDLPPSLEALNVRDNYLTDLP 273
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
L + S N L +L + A +N+++SL P L+ L++S N+L
Sbjct: 274 -ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLI 330
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ---- 236
LP P LE + AS N + ++P L L + +N L P +
Sbjct: 331 ELPALP---PRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDL 382
Query: 237 ------------IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
+LK L +++N + P + ++ L ++ +
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----ESVEDLRMNSERVVDPYEFA 435
Score = 107 bits (270), Expect = 3e-25
Identities = 56/274 (20%), Positives = 96/274 (35%), Gaps = 42/274 (15%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAE 58
L+ N L E P + P L + A N + LP ++ +N +
Sbjct: 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL--- 272
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
PE+ LT +++ N + + NL L+ S N I S
Sbjct: 273 -------------------PELPQSLTFLDVSENIF--SGLSELPPNLYYLNASSNEIRS 311
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
L LE + S N+L L L +IA N L + P L+ L + YN
Sbjct: 312 LC-DLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV--PELPQNLKQLHVEYNP 368
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L PD ++ +L ++ + ++P L L + N L P +
Sbjct: 369 LREFPDIPESVEDLR----MNSHLAEVPE-----LPQNLKQLHVETNPLREFPDIPE--- 416
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
S++ L + S + + + + KL+ +
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
Score = 73.1 bits (180), Expect = 6e-14
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
L+ + L + + ++ S N + P + +++ + L
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243
+ + ++ ++ LP L +L S N LT LP L + + SL
Sbjct: 70 -----DRQAHELELNNLGLSSLPE-----LPPHLESLVASCNSLTELPELPQSLKSLLVD 119
Query: 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
+++ LP L+ L +S N L+ LP LQ
Sbjct: 120 NNNLKALSDLP-------PLLEYLGVSNNQLEKLPELQN 151
Score = 63.5 bits (155), Expect = 6e-11
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 50/205 (24%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L N++ D P L+ L+ + N++ LP
Sbjct: 299 LYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPALP------------------- 336
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L + N L + NL L V N +
Sbjct: 337 ---------------------PRLERLIASFNHL--AEVPELPQNLKQLHVEYNPLREFP 373
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+E ++ + + L + +L + N L+ P ++ L ++ +
Sbjct: 374 -DIPESVEDLRMN-SHLAEVPELPQNLKQLHVETNPLREF--PDIPESVEDLRMNSERVV 429
Query: 181 SLPDWI-DTCPELETIFASHNRITQ 204
++ +T +LE H+
Sbjct: 430 DPYEFAHETTDKLEDDVFEHHHHHH 454
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 125 bits (317), Expect = 8e-32
Identities = 59/319 (18%), Positives = 112/319 (35%), Gaps = 37/319 (11%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
++ ++ + E ++ L N I +LP + + L N +
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDV 111
+ R +LT++++ +N L+ +L L +
Sbjct: 131 S------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 112 SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA--RL 169
S N + +DL + L S N L TL ++ + A +N + + P L
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINVV---RGPVNVEL 228
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
L + +N L W+ P L + S+N + ++ F + + +L L +S NRL +
Sbjct: 229 TILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA 286
Query: 230 LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLN 288
L + I +LK L L N + + + Q L+ L + N + L S L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLT 345
Query: 289 ISQLRLPGFCNSDALIGIF 307
+S +
Sbjct: 346 LSHNDWDCNSLRALFRNVA 364
Score = 122 bits (308), Expect = 1e-30
Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 45/309 (14%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
+ + + + P DSF +++ L+ +I + + + N I
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
+ + ++ LT + L N L ++ I N LTTL
Sbjct: 107 Y-LPPHVFQNVPL-----------------LTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147
Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRP 166
+S N++E ++ L++++ S N+L + L+ SL N L +L P
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL---AIP 204
Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
++ LD S+N + + EL + HN +T L + LS+N
Sbjct: 205 IAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNE 259
Query: 227 LTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
L + ++ L+ L++ +N + L Q LKVL++S N L + Q
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ--PQ 316
Query: 286 LLNISQLRL 294
+ L L
Sbjct: 317 FDRLENLYL 325
Score = 109 bits (275), Expect = 4e-26
Identities = 61/288 (21%), Positives = 103/288 (35%), Gaps = 46/288 (15%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
L ++RNDL+ P + P+L LS + N + + + L +N +
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSE 113
H + + L N+ N L L + LD S
Sbjct: 179 HV---------------------DLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASH 214
Query: 114 NSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPA---- 167
NSI + L +K N L +LN L+ V N+L+ +
Sbjct: 215 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKM 271
Query: 168 -RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
RL+ L IS N L +L + P L+ + SHN + + + +L L L N
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHNS 329
Query: 227 LTSLPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNC 273
+ +L + +LK L L N + +N ++ V + ++C
Sbjct: 330 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375
Score = 95.5 bits (238), Expect = 2e-21
Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 28/222 (12%)
Query: 86 SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL-- 140
+++++ + N + +++ L L + ++E + + Q++ +
Sbjct: 27 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 141 -VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPEL 192
++ + G N ++ L P L L + N+L SLP I P+L
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
T+ S+N + ++ F + L LQLS NRLT + + I SL + + N ++
Sbjct: 144 TTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200
Query: 253 LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L ++ L+ S N + ++ + ++ L+L
Sbjct: 201 LAIP-----IAVEELDASHNSINVVRGPV----NVELTILKL 233
Score = 92.4 bits (230), Expect = 2e-20
Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 16/219 (7%)
Query: 88 NLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
N++ Q + I N + I+ E I + N K + S++
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVF--YDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTM 57
Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLP 206
+ A L S +++ L+++ ++E + + ++ ++ N I LP
Sbjct: 58 RKLPAA--LLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
F + + L L L N L+SLP + L L + +N++ + Q ++ L+
Sbjct: 110 PHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 266 VLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCNSDAL 303
L +S N L + SL + N+S L A+
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 128 bits (322), Expect = 2e-31
Identities = 74/280 (26%), Positives = 111/280 (39%), Gaps = 44/280 (15%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAE 58
+ + N+LT P P L+ L + N+++ LPV +S +N + H
Sbjct: 63 ITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH---- 115
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
P + L + + NQL T + L L VS+N + S
Sbjct: 116 ------------------LPALPSGLCKLWIFGNQL--TSLPVLPPGLQELSVSDNQLAS 155
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
L + L + NQL +L + S L + +N+L SL P+ L L N
Sbjct: 156 LP-ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL--PTLPSELYKLWAYNNR 212
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L SLP L+ + S NR+T LP +L L +S NRLTSLP L +
Sbjct: 213 LTSLPALP---SGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPML---PS 261
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L + N + LP+ + SS +N+ N L
Sbjct: 262 GLLSLSVYRNQLTRLPESLIHLSS-ETTVNLEGNPLSERT 300
Score = 125 bits (314), Expect = 2e-30
Identities = 73/340 (21%), Positives = 118/340 (34%), Gaps = 39/340 (11%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ V N LT P L S + LP L + N +
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCK-LWIFGNQL-------- 133
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
P + L +++ NQL + L L N + SL
Sbjct: 134 --------------TSLPVLPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLP 177
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+ + L+ + S NQL +L S L + A NN+L SL P+ L+ L +S N L
Sbjct: 178 ML-PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL--PALPSGLKELIVSGNRLT 234
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
SLP EL+ + S NR+T LP L +L + N+LT LP + ++S
Sbjct: 235 SLPVLP---SELKELMVSGNRLTSLP-----MLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLN---ISKNCLKMLPSLQKGFYLLNISQLRLPGF 297
+ L+ N ++ L+ + + I + + L + +P
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346
Query: 298 CNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETA 337
A + D A + R+ E +K+
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAG 386
Score = 121 bits (304), Expect = 4e-29
Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 24/219 (10%)
Query: 78 PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRN 135
+ +T++ + N L T + L TL+VS N + SL L L
Sbjct: 57 DCLPAHITTLVIPDNNL--TSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
L L S L + N+L SL P LQ L +S N+L SLP EL +
Sbjct: 115 HLPALP---SGLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLASLPALP---SELCKL 166
Query: 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ 255
+A +N++T LP L L +S N+L SLP+L + L L+ +N + LP
Sbjct: 167 WAYNNQLTSLPM-----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 218
Query: 256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L S LK L +S N L LP L L +S RL
Sbjct: 219 LP----SGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253
Score = 117 bits (295), Expect = 4e-28
Identities = 76/281 (27%), Positives = 107/281 (38%), Gaps = 48/281 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL---NNVIEHGIA 57
V + LT P + L N ++ LP + L N + +
Sbjct: 42 NAVLNVGESGLTTLP--DCLPAHITTLVIPDNNLTSLPALPPE-LRTLEVSGNQLTS-LP 97
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
P EL+ + L L L + N +
Sbjct: 98 V------------------LPPGLLELSIFSNPLTHLPALP-----SGLCKLWIFGNQLT 134
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
SL L+ + S NQL +L S L + A NN+L SL P+ LQ L +S N
Sbjct: 135 SLP-VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PMLPSGLQELSVSDN 191
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
+L SLP EL ++A +NR+T LP+ L L +S NRLTSLP L +
Sbjct: 192 QLASLPTLP---SELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLPVLPSE- 242
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
LK L + N + LP L S L L++ +N L LP
Sbjct: 243 --LKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLP 277
Score = 113 bits (283), Expect = 2e-26
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
L+V E+ + +L + ++ N L +L L ++ N+L SL
Sbjct: 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL--PV 98
Query: 165 RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P L L I N L LP L ++ N++T LP L L +S
Sbjct: 99 LPPGLLELSIFSNPLTHLPALPS---GLCKLWIFGNQLTSLPV-----LPPGLQELSVSD 150
Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGF 284
N+L SLP+L + L L+ +N + LP L S L+ L++S N L LP+L
Sbjct: 151 NQLASLPAL---PSELCKLWAYNNQLTSLPMLP----SGLQELSVSDNQLASLPTLPSEL 203
Query: 285 YLLNISQLRL 294
Y L RL
Sbjct: 204 YKLWAYNNRL 213
Score = 88.4 bits (219), Expect = 1e-18
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 153 GNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCR 212
G + + + L++ + L +LPD + + T+ N +T LP+
Sbjct: 26 GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPA----- 78
Query: 213 ELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+L TL++S N+LTSLP L + L + LP S L L I N
Sbjct: 79 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGN 131
Query: 273 CLKMLPSLQKGFYLLNISQLRL 294
L LP L G L++S +L
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQL 153
Score = 31.4 bits (71), Expect = 1.0
Identities = 29/197 (14%), Positives = 49/197 (24%), Gaps = 46/197 (23%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+E V N LT P L LS +N+++ LP L H S
Sbjct: 243 LKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSS-------------- 285
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
T+VNL N L L +T+ I D
Sbjct: 286 -----------------------ETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFD 321
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+ + + ++ + + + + L
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAR-----EGEPAPADRWHMFGQEDNADAFSLFLDRLS 376
Query: 181 SLPDWIDTCPELETIFA 197
++I I +
Sbjct: 377 ETENFIKDAGFKAQISS 393
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 117 bits (295), Expect = 2e-29
Identities = 54/308 (17%), Positives = 111/308 (36%), Gaps = 54/308 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+ +V + L + + S +K L + N +S + ++P
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTK--------- 59
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
L +NL SN L T+ L + L TLD++ N ++ L
Sbjct: 60 ------------------------LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 120 DLGALNRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLD 173
+E++ + N + + G ++ NNK+ L R+Q+LD
Sbjct: 96 --LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLD 150
Query: 174 ISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
+ NE++++ + + LE + +N I + Q KL TL LS N+L +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMG 207
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ 291
+ A + ++ L++N + ++ + + S L+ ++ N +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 292 LRLPGFCN 299
+
Sbjct: 267 VAKQTVKK 274
Score = 116 bits (292), Expect = 6e-29
Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 19/207 (9%)
Query: 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQL 137
+ + LK + + + N+ LD+S N + + L +LE + S N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 138 KTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
+ + S+L ++ NN +Q L ++ L + N + + + I
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS--CSRGQGKKNI 125
Query: 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYLFLQSNSINIL 253
+ ++N+IT L ++ L L N + ++ L +L++L LQ N I +
Sbjct: 126 YLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 254 P-QLFLQNSSKLKVLNISKNCLKMLPS 279
Q+ LK L++S N L +
Sbjct: 185 KGQVVFAK---LKTLDLSSNKLAFMGP 208
Score = 114 bits (287), Expect = 3e-28
Identities = 45/291 (15%), Positives = 108/291 (37%), Gaps = 57/291 (19%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
++E + N L++ F +L+ L+ + N + L+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLST--------- 81
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
L +++L +N ++ L ++ TL + N+I +
Sbjct: 82 ------------------------LRTLDLNNNYVQE---LLVGPSIETLHAANNNISRV 114
Query: 120 DLGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSL---IVSPRPARLQHL 172
++I + N++ L S + + N++ ++ ++ L+HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
++ YN + + + +L+T+ S N++ + +F + + L N+L +
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231
Query: 233 LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
+R +L++ L+ N + L F +N +V ++K +K L
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQN 279
Score = 98.1 bits (245), Expect = 1e-22
Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLKTL---VLNG-SSLISVI 151
I N V+++S++ ++K S N L + L + L +
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 152 AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFC 211
+N L + + L+ LD++ N ++ L P +ET+ A++N I+++
Sbjct: 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG- 119
Query: 212 RELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILP-QLFLQNSSKLKVLNI 269
+ L+ N++T L L + ++YL L+ N I+ + +S L+ LN+
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 270 SKNCLKMLPSL 280
N + +
Sbjct: 177 QYNFIYDVKGQ 187
Score = 97.4 bits (243), Expect = 2e-22
Identities = 40/295 (13%), Positives = 87/295 (29%), Gaps = 67/295 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ ++ N + E P ++ L AA N IS +
Sbjct: 82 LRTLDLNNNYVQELLVG----PSIETLHAANNNISRVS---------------------- 115
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIES 118
+ ++ L +N++ + G + LD+ N I++
Sbjct: 116 CSRGQG-----------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
++ L L+ L L N + + A+L+ LD+S N+
Sbjct: 159 VNFAELAASSD------TLEHLNLQ----------YNFIYDVKGQVVFAKLKTLDLSSNK 202
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L + + + I +N++ + R L L N
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
+ + + ++ L + + + + C + LP+ + + L
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP----FADRLIALG 311
Score = 86.2 bits (214), Expect = 1e-18
Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 23/178 (12%)
Query: 137 LKTLVLNGSSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLP-DWIDTCPELE 193
+ + NG+ ++ L+ + S ++ LD+S N L + + +LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL------------IRQI---- 237
+ S N + + L L TL L+ N + L I ++
Sbjct: 62 LLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118
Query: 238 -ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
K ++L +N I +L L S+++ L++ N + + + + L L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Score = 69.2 bits (170), Expect = 5e-13
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIAS 239
++ + + + + + Q + + + L LS N L+ + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
L+ L L SN + L++ S L+ L+++ N ++ L
Sbjct: 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100
Score = 59.2 bits (144), Expect = 9e-10
Identities = 31/273 (11%), Positives = 66/273 (24%), Gaps = 81/273 (29%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+ + N +T R+++L N I +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------------------- 160
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
E+ + L L++ N I +
Sbjct: 161 -----------------FAELAASSDT-------------------LEHLNLQYNFIYDV 184
Query: 120 DLGA-LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+L+++ S N+L + + QS A + + + N+
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAFM-------------GPEFQSA------AGVTWISLRNNK 225
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L + + LE N + F + ++ T+ + L +
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEEC 283
Query: 239 SLKYLFLQSN-SINILPQLFLQNSSKLKVLNIS 270
++ L LP F L +
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 120 bits (302), Expect = 2e-29
Identities = 57/308 (18%), Positives = 102/308 (33%), Gaps = 57/308 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L + +T+ G + L L N I+ L + S N
Sbjct: 44 LTSLDCHNSSITDMTGIEK-LTGLTKLICTSNNITTLDL------SQNTN---------- 86
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT + SN+L + + LT L+ N + LD
Sbjct: 87 -----------------------LTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKLD 122
Query: 121 LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+ L + C+RN L + ++ + L + NK + + +L LD S+N++
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182
Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
L + L + N IT+L + +L L S N+LT + + +
Sbjct: 183 TELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID--VTPLTQ 234
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ----KGFYLLNISQLRLP 295
L Y N + L + SKL L+ + L + F +++
Sbjct: 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291
Query: 296 GFCNSDAL 303
++ L
Sbjct: 292 DVTHNTQL 299
Score = 118 bits (298), Expect = 8e-29
Identities = 63/301 (20%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L D N LT+ +Q P L +L+ A+N ++ + V S
Sbjct: 108 LTYLNCDTNKLTKLDVSQ--NPLLTYLNCARNTLTEIDV------SHNTQ---------- 149
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT ++ N+ + + LTTLD S N I LD
Sbjct: 150 -----------------------LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186
Query: 121 LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+ L + C N + L LN L + +NKL + V+P L + D S N L
Sbjct: 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCSVNPL 245
Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCR------------------ELGKLHTLQ 221
L T +L T+ + ++ + +L+ L
Sbjct: 246 TELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303
Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
+T L + Q L YL+L + + L + +++KLK L+ ++ S+
Sbjct: 304 CQAAGITELD--LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVG 358
Query: 282 K 282
K
Sbjct: 359 K 359
Score = 115 bits (291), Expect = 6e-28
Identities = 61/330 (18%), Positives = 114/330 (34%), Gaps = 58/330 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L N +TE +Q L L+ N I+ L + +
Sbjct: 172 LTTLDCSFNKITELDVSQ--NKLLNRLNCDTNNITKLDL------NQNIQ---------- 213
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT ++ SN+L I + LT D S N + LD
Sbjct: 214 -----------------------LTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELD 249
Query: 121 LGALNRLESIKCSRNQLKTL-VLNGSSLISV-IAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ L++L ++ C + L + + + + LI G K++ L V+ +L LD
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAG 308
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ L + P+L ++ ++ +T+L KL +L + S + +I
Sbjct: 309 ITELD--LSQNPKLVYLYLNNTELTELDV----SHNTKLKSLSCVNAHIQDFSS-VGKIP 361
Query: 239 SLKYLFLQSNSINILPQLFLQNSS-----KLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
+L F +P+ L N+S +L+ N + + P G Y + +
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD-GGVYDQATNTIT 420
Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQSI 323
+ + + +NG I T+
Sbjct: 421 WENLSTDNPAVTYTFTSENGAIVGTVTTPF 450
Score = 111 bits (280), Expect = 2e-26
Identities = 62/282 (21%), Positives = 96/282 (34%), Gaps = 38/282 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL---NNVIEHGIA 57
L D N LT +L +L+ N+++ L V ++ L N +
Sbjct: 87 LTYLACDSNKLTNLDVTP--LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---- 140
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
E D +LT ++ N+ + + LTTLD S N I
Sbjct: 141 ---EIDVSH--------------NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
LD+ L + C N + L LN L + +NKL + V+P L + D S
Sbjct: 184 ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCSV 242
Query: 177 NELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
N L L T +L T+ + ++ +L Q R +
Sbjct: 243 NPLTELDVS--TLSKLTTLHCIQTDLLEID----LTHNTQLIYFQAEGCRKIKELD-VTH 295
Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L Q+ I L L + KL L ++ L L
Sbjct: 296 NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD 334
Score = 107 bits (270), Expect = 3e-25
Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 72/299 (24%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L + N++T +Q L +L+ N++++L V +PL
Sbjct: 66 LTKLICTSNNITTLDLSQ--NTNLTYLACDSNKLTNLDV------TPLTK---------- 107
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT +N +N+L + + LT L+ + N++ +D
Sbjct: 108 -----------------------LTYLNCDTNKLT-KLDVSQNPLLTYLNCARNTLTEID 143
Query: 121 LGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ +L + C N+ T V + L ++ NK+ L VS + L L+ N
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS-QNKLLNRLNCDTNN 202
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ L ++ +L + S N++T++ L +L S N LT L + ++
Sbjct: 203 ITKLD--LNQNIQLTFLDCSSNKLTEIDV----TPLTQLTYFDCSVNPLTELD--VSTLS 254
Query: 239 SLKYLFLQSNSI-------------------NILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L + + +L + ++++L +L+ + L
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313
Score = 87.8 bits (218), Expect = 1e-18
Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 13/179 (7%)
Query: 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQS 159
N+ + + +++ L L S+ C + + + + + L +I +N + +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT 78
Query: 160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
L +S L +L N+L +L + +L + N++T+L + L
Sbjct: 79 LDLSQNTN-LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDV----SQNPLLTY 131
Query: 220 LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L + N LT + + L L N + +L + ++L L+ S N + L
Sbjct: 132 LNCARNTLTEID--VSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITELD 186
Score = 30.8 bits (70), Expect = 1.3
Identities = 4/55 (7%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ + + + + L L+ + + + ++ L +++L
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLIC 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 121 bits (304), Expect = 3e-29
Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 33/308 (10%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
++ ++ + E ++ L N I +LP + + L N +
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDV 111
+ R +LT++++ +N L+ +L L +
Sbjct: 137 S------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 112 SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQH 171
S N + +DL + L S N L TL ++ + A +N + + P L
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINV-VRGPVNVELTI 236
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
L + +N L W+ P L + S+N + ++ F ++ +L L +S NRL +L
Sbjct: 237 LKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN 294
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNIS 290
+ I +LK L L N + + + Q L+ L + N + L S L +S
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLTLS 353
Query: 291 QLRLPGFC 298
Sbjct: 354 HNDWDCNS 361
Score = 116 bits (291), Expect = 2e-27
Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 45/309 (14%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
+ + + + P DSF +++ L+ +I + + + N I
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
+ + ++ LT + L N L ++ I N LTTL
Sbjct: 113 Y-LPPHVFQNVPL-----------------LTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153
Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRP 166
+S N++E ++ L++++ S N+L + L+ SL N L +L P
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL---AIP 210
Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
++ LD S+N + + EL + HN +T L + LS+N
Sbjct: 211 IAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNE 265
Query: 227 LTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
L + ++ L+ L++ +N + L Q LKVL++S N L + Q
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ--PQ 322
Query: 286 LLNISQLRL 294
+ L L
Sbjct: 323 FDRLENLYL 331
Score = 106 bits (265), Expect = 2e-24
Identities = 80/430 (18%), Positives = 139/430 (32%), Gaps = 54/430 (12%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
L ++RNDL+ P + P+L LS + N + + + L +N +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSE 113
H + + L N+ N L L + LD S
Sbjct: 185 HV---------------------DLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASH 220
Query: 114 NSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSP--RPARL 169
NSI + L +K N L +LN L+ V N+L+ ++ P + RL
Sbjct: 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
+ L IS N L +L + P L+ + SHN + + + +L L L N + +
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHNSIVT 338
Query: 230 LPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCL-----------KML 277
L + +LK L L N + +N ++ V + ++C K
Sbjct: 339 LK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 396
Query: 278 PSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETA 337
L I+ + G + D + +L I + E
Sbjct: 397 DKPYLDRLLQYIALTSV--VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454
Query: 338 SDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS 397
+ + + + + L L H + RY L + + L +
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGL-HAEIDTNLRRYRLPKDGLARSSDNLNKVFTH 513
Query: 398 LTFTHAPTLS 407
L A L
Sbjct: 514 LKERQAFKLR 523
Score = 93.1 bits (231), Expect = 4e-20
Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 25/199 (12%)
Query: 86 SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS 145
+++++ + N + +++ L L+ Q++ L LN
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-------RQVELLNLN-- 83
Query: 146 SLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRI 202
+ +++ + +Q L + +N + LP + P L + N +
Sbjct: 84 --------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNS 261
+ LP F KL TL +S N L + + SL+ L L SN + + + +
Sbjct: 136 SSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS- 193
Query: 262 SKLKVLNISKNCLKMLPSL 280
L N+S N L L
Sbjct: 194 --LFHANVSYNLLSTLAIP 210
Score = 89.2 bits (221), Expect = 6e-19
Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 16/219 (7%)
Query: 88 NLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
N++ Q + I N + I+ E I + K + S++
Sbjct: 8 NVKPRQPEYKCIDSNLQYDCVF--YDVHIDMQTQDVYFGFEDITLNN--QKIVTFKNSTM 63
Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLP 206
+ A L S +++ L+++ ++E + + ++ ++ N I LP
Sbjct: 64 RKLPAAL--LDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115
Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
F + + L L L N L+SLP I L L + +N++ + Q ++ L+
Sbjct: 116 PHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 266 VLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCNSDAL 303
L +S N L + SL + N+S L A+
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213
Score = 33.4 bits (76), Expect = 0.24
Identities = 45/290 (15%), Positives = 85/290 (29%), Gaps = 22/290 (7%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP---------VFLRH-------P 44
L+ + N L NQ F RL+ L N I L + L H
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSL 362
Query: 45 MSPLNNVIEHGI--AEEREEDFEQDEDGIIVERREPEVKGE-LTSVNLRSNQLKGTIILG 101
+ NV + A++ + Q E G+ + + L + L S K G
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422
Query: 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI 161
T++ ++ + L+ + ++ L L + +L +
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGL 482
Query: 162 VSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
+ L+ + + L D L+ A R TQ + + L
Sbjct: 483 HAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL 542
Query: 221 QLSFNRLTSLPSLI--RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLN 268
+ L +Q + L+ + L +N +V +
Sbjct: 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSH 592
Score = 28.7 bits (64), Expect = 5.5
Identities = 4/64 (6%), Positives = 23/64 (35%)
Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
+ + ++ + S ++ + + + ++ + K++ + ++
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 276 MLPS 279
LP+
Sbjct: 65 KLPA 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 120 bits (303), Expect = 9e-29
Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 71/312 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQD--SFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
+Q F + N+L EFP + +L L N++ HL F
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF-----GTNVK-------- 596
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI 116
LT + L NQ++ + L S N +
Sbjct: 597 -------------------------LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Query: 117 ESL----DLGALNRLESIKCSRNQLKTL---------VLNGSSLISVIAGNNKLQSLIVS 163
+ + + ++ + S+ S N++ + G + +V N++Q
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691
Query: 164 --PRPARLQHLDISYNELESLPDW--------IDTCPELETIFASHNRITQLPSQFFCRE 213
+ + + +S N + S+P+ L TI N++T L F
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751
Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF------LQNSSKLKVL 267
L L + +S+N +S P+ + LK ++ ++ + L L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 268 NISKNCLKMLPS 279
I N ++ +
Sbjct: 812 QIGSNDIRKVDE 823
Score = 105 bits (263), Expect = 7e-24
Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 44/241 (18%)
Query: 83 ELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESL---------DLGALNRLESI 130
+ T + +N++ T I + L + + + + + E+
Sbjct: 426 KDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483
Query: 131 KCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELES-- 181
+ S + LK L + + + L P LQ L+I+ N S
Sbjct: 484 ELSWSNLKDLTDVE-------LYNCPNMTQL-----PDFLYDLPELQSLNIACNRGISAA 531
Query: 182 --------LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
L D DT P+++ + +N + + P+ +++ KL L N++ L +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591
Query: 234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
L L L N I +P+ F + +++ L S N LK +P++ + + +
Sbjct: 592 G-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
Query: 294 L 294
Sbjct: 651 F 651
Score = 104 bits (260), Expect = 2e-23
Identities = 53/322 (16%), Positives = 97/322 (30%), Gaps = 89/322 (27%)
Query: 1 LQEFRVDRNDLTEFP--GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
++ N L P N S + + + N+I + M +
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI------- 673
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSI 116
++V L N+++ + ++T+ +S N +
Sbjct: 674 ------------------------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
S+ N LK N + L +D+ +
Sbjct: 710 TSI-------------PENSLKPKDGNYKNTYL-------------------LTTIDLRF 737
Query: 177 NELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-------L 227
N+L SL D P L + S+N + P+Q +L + R L
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL--NSSQLKAFGIRHQRDAEGNRIL 795
Query: 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP------SLQ 281
P+ I SL L + SN I + + L +L+I+ N + ++
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIE 852
Query: 282 KGFYLLNISQLRLPGFCNSDAL 303
G Y+L + + DAL
Sbjct: 853 AGMYVLLYDKTQD--IRGCDAL 872
Score = 85.7 bits (212), Expect = 1e-17
Identities = 30/232 (12%), Positives = 67/232 (28%), Gaps = 24/232 (10%)
Query: 82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
G +T ++L KG + +G L L +S + + S +
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 140 LVLNGSSLISVIAGNNKLQSL----------IVSPRPARLQHL-----DISYNELESLPD 184
+ ++ + L L + + L N + +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
I +L+ I+ +++ T + + + + L +
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 245 LQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLP 295
L + + LP + +L+ LNI+ N L+ + L + P
Sbjct: 498 LYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Score = 50.3 bits (120), Expect = 1e-06
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 197 ASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQ 255
+ P G++ L L+ +P I Q+ LK L ++S + +
Sbjct: 306 KELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364
Query: 256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
LF + K+ ++M Y ++ L
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 117 bits (296), Expect = 6e-28
Identities = 61/317 (19%), Positives = 115/317 (36%), Gaps = 54/317 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH----- 54
L+ ++ ND+ N LK+LS + + S + +S ++ +
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 55 -GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
I++ + F L ++L N++ + N+ +
Sbjct: 391 NKISKIESDAFSWLG--------------HLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436
Query: 111 VSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP---- 166
+S N L + + S L+ L+L L+++ SP P
Sbjct: 437 LSYNKYLQLTRNSFALVPS-------LQRLMLR----------RVALKNVDSSPSPFQPL 479
Query: 167 ARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRE-------LGKLH 218
L LD+S N + ++ D ++ +LE + HN + +L L LH
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 219 TLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
L L N + + + + LK + L N++N LP N LK LN+ KN + +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 278 PSLQKGFYLLNISQLRL 294
G N+++L +
Sbjct: 600 EKKVFGPAFRNLTELDM 616
Score = 108 bits (272), Expect = 6e-25
Identities = 58/331 (17%), Positives = 110/331 (33%), Gaps = 59/331 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPL------NNV 51
L+ + N+L++ +F L L N I + L +N
Sbjct: 75 LKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
Query: 52 IEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQL----KGTIILGNYGNLT 107
+ + L + L +N++ + + +L
Sbjct: 133 LSS------------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174
Query: 108 TLDVSENSIESLDLGALNRLESIKC---SRNQLKTLV-------LNGSSLISVIAGNNKL 157
L++S N I+ G + + + + QL + L +S+ ++ N++L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 158 QSLIVSP----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCR 212
+ + + L LD+SYN L + D P+LE F +N I L S
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-H 293
Query: 213 ELGKLHTLQL---------SFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
L + L L S L + + + L++L ++ N I +
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 263 KLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
LK L++S + + + F L S L
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384
Score = 107 bits (268), Expect = 2e-24
Identities = 56/299 (18%), Positives = 105/299 (35%), Gaps = 56/299 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+ + N L P + +L L N IS L L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQKLPM--------- 74
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
L +NL+ N+L NLT L + NSI+
Sbjct: 75 ------------------------LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 118 SLD---LGALNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNKLQSLIVSP----RP 166
+ L ++ S N L + L +L ++ NNK+Q+L
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 167 ARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELG--KLHTLQLS 223
+ L+ L++S N+++ P L +F ++ ++ ++ C EL + L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 224 FNRLTSLPSLI---RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
++L++ + + +L L L N++N++ +L+ + N ++ L S
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Score = 105 bits (265), Expect = 4e-24
Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 28/221 (12%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
+T +NL NQL+ Y LT+LDV N+I L+ +L LK L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-------MLKVLN 79
Query: 142 LNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELESL-PDWIDTCPELETIFAS 198
L +N+L L L L + N ++ + + L T+ S
Sbjct: 80 LQ----------HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---LIRQIASLKYLFLQSNSINILPQ 255
HN ++ + L L L LS N++ +L S I +SLK L L SN I
Sbjct: 130 HNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 256 LFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLRL 294
+L L ++ L + L +I L L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Score = 103 bits (260), Expect = 1e-23
Identities = 58/302 (19%), Positives = 101/302 (33%), Gaps = 53/302 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L + N+L + P+L++ N I HL H + L NV
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF---SHSLHGLFNV-------- 298
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
R +K T ++ L L L++ +N I
Sbjct: 299 ----------------RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 118 SLDLGALNRLESIKC---SRNQLKTLVLNGSSLISVIAGNNKLQSL------IVSPRP-- 166
+ L ++K S + L + +S+ ++ L L I
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDA 400
Query: 167 ----ARLQHLDISYNELESL--PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
L+ LD+ NE+ + I+ S+N+ QL F + L L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRL 459
Query: 221 QLSFNRLTSL---PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
L L ++ PS + + +L L L +N+I + L+ KL++L++ N L L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 278 PS 279
Sbjct: 520 WK 521
Score = 98.9 bits (247), Expect = 7e-22
Identities = 53/295 (17%), Positives = 97/295 (32%), Gaps = 62/295 (21%)
Query: 9 NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDE 68
LT+ P D + L+ N++ LP + +
Sbjct: 14 LKLTQVP--DDLPTNITVLNLTHNQLRRLP---AANFTRYSQ------------------ 50
Query: 69 DGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNR 126
LTS+++ N + + L L++ N + L
Sbjct: 51 ---------------LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95
Query: 127 LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDW 185
+ L L L +S+ + L LD+S+N L S
Sbjct: 96 CTN-------LTELHLMSNSIQKIKNNP--FVKQ------KNLITLDLSHNGLSSTKLGT 140
Query: 186 IDTCPELETIFASHNRITQLPSQFFCR-ELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL 243
L+ + S+N+I L S+ L L+LS N++ P I L L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 244 FLQSNSIN--ILPQLFLQ-NSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRL 294
FL + + + +L L+ ++ ++ L++S + L + G N++ L L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Score = 90.4 bits (225), Expect = 3e-19
Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 23/191 (12%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
+ D S + + + + + NQL+ L
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRL------------PAANFTRY---- 48
Query: 165 RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
++L LD+ +N + L P+ P L+ + HN ++QL + F L L L
Sbjct: 49 --SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLM 105
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
N + + + + +L L L N ++ L+ L +S N ++ L S +
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS--E 163
Query: 283 GFYLLNISQLR 293
+ S L+
Sbjct: 164 ELDIFANSSLK 174
Score = 55.8 bits (135), Expect = 3e-08
Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 77/261 (29%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+ E + N + N P L+ L + + ++ P PL N
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP-SPFQPLRN--------- 481
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
LT ++L +N + +L L LD+ N++
Sbjct: 482 ------------------------LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Query: 118 SLD-----------LGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSLIV 162
L L L+ L + N + + L + G N L +L
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577
Query: 163 S--PRPARLQHLDISYNELESLPD-------------------WIDTCPELET----IFA 197
S L+ L++ N + S+ + TC + I
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637
Query: 198 SHNRITQLPSQFFCRELGKLH 218
+H I +L S + C H
Sbjct: 638 THTNIPELSSHYLCNTPPHYH 658
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 115 bits (289), Expect = 1e-27
Identities = 50/340 (14%), Positives = 117/340 (34%), Gaps = 58/340 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
++E + N L++ F +L+ L+ + N + L+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLST--------- 81
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
L +++L +N ++ L ++ TL + N+I +
Sbjct: 82 ------------------------LRTLDLNNNYVQE---LLVGPSIETLHAANNNISRV 114
Query: 120 DLGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSL---IVSPRPARLQHL 172
++I + N++ L S + + N++ ++ ++ L+HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
++ YN + + + +L+T+ S N++ + +F + + L N+L +
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231
Query: 233 LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290
+R +L++ L+ N + L F +N +V ++K +K L + +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQNEEE-CTVPT 287
Query: 291 QLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEE 330
+C D D + S E
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327
Score = 114 bits (287), Expect = 2e-27
Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 38/305 (12%)
Query: 11 LTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEHGIAEEREEDF 64
+ E N R K + + LR + N + A +
Sbjct: 2 IHEIKQNG---NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD----L 54
Query: 65 EQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGAL 124
+L +NL SN L T+ L + L TLD++ N ++ L
Sbjct: 55 AP--------------FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVG 98
Query: 125 NRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELES 181
+E++ + N + + G ++ NNK+ L +R+Q+LD+ NE+++
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 182 LP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
+ + + LE + +N I + Q KL TL LS N+L + + A
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAG 215
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN 299
+ ++ L++N + ++ + + S L+ ++ N + +
Sbjct: 216 VTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 300 SDALI 304
Sbjct: 275 LTGQN 279
Score = 82.2 bits (203), Expect = 1e-16
Identities = 39/300 (13%), Positives = 81/300 (27%), Gaps = 36/300 (12%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEH 54
++ N+++ + K + A N+I+ L S + N I+
Sbjct: 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 55 GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN 114
E + L +NL+ N + + L TLD+S N
Sbjct: 159 VNFAELAASSDT-----------------LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
Query: 115 SIESLD--LGALNRLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVSPRPARL 169
+ + + + I N+L + + +L N + ++
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 170 QHL-DISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCR----ELGKLHTLQLS 223
Q + ++ ++ L + C LP+ F R + + L
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Query: 224 FNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
+ L A + + + L K L S +
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Score = 67.9 bits (166), Expect = 3e-12
Identities = 40/273 (14%), Positives = 69/273 (25%), Gaps = 49/273 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N L S + ++S N++ + LR +
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN-------------- 238
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L +LR N + G L ++++
Sbjct: 239 -----------------------LEHFDLRGNGF-------HCGTLRDFFSKNQRVQTVA 268
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+ +L + TL G+ + LI R L +E E
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDL-PAPFADRLIALKRK-EHALLSGQGSETE 326
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR-QIAS 239
L + I A + + Q TL+ L S R A
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVT-LRKQAKITLEQKKKALDEQVSNGRRAHAE 385
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
L Q+ L + S L++L
Sbjct: 386 LDGTLQQAVGQIELQHAT-EEQSPLQLLRAIVK 417
Score = 67.2 bits (164), Expect = 5e-12
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIAS 239
++ + + + + + Q + + + L LS N L+ + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
L+ L L SN + L++ S L+ L+++ N ++ L
Sbjct: 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100
Score = 57.5 bits (139), Expect = 6e-09
Identities = 28/281 (9%), Positives = 67/281 (23%), Gaps = 49/281 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ + N L L+ N LR S
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT--LRDFFSKNQR---------- 263
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
+ +V ++ + T E L
Sbjct: 264 -----------------------VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+RL ++K + L + + + + N AR + +D +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECEREN-----------QARQREIDALKEQYR 349
Query: 181 SLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
++ D + T+ + + S R +L L + +
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGR-RAHAELDGTLQQAVGQIELQHATEEQSP 408
Query: 240 LKYLFLQSNSINILP-QLFLQNSSKLKVLNISKNCLKMLPS 279
L+ L + + ++ ++ ++ ++ L
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 107 bits (269), Expect = 3e-27
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 18/165 (10%)
Query: 101 GNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTL---VLNGSSLISVIAGNN 155
G + L + L +G L ++ +L L V +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 156 KLQSLIVSPRPA------RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQF 209
+L L A L Y EL L + PE + + +T+L +
Sbjct: 61 ELTRL-----KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAV 115
Query: 210 FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP 254
EL + LQ + LT L + + ++ + L
Sbjct: 116 G--ELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLK 158
Score = 90.2 bits (225), Expect = 2e-21
Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 22/145 (15%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELESLPDWIDTCPELETIFAS 198
+ +L L A L Y EL L + PE +
Sbjct: 4 PEKSKLQEIYQELTRL-----KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 58
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP---- 254
+ +T+L + EL + LQ + LT L + + ++ L + L
Sbjct: 59 YQELTRLKAAV--GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVG 116
Query: 255 QLFLQNSSKLKVLNISKNCLKMLPS 279
+L + L L L +
Sbjct: 117 EL-----PEKSKLQEIYQELTQLKA 136
Score = 82.9 bits (206), Expect = 1e-18
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 26/150 (17%)
Query: 83 ELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQL 137
E + + +L T + +G + L + L +G L ++ +L
Sbjct: 28 EKSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 85
Query: 138 KTL---VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELESLPDWIDT 188
L V + +L L A L Y EL L +
Sbjct: 86 TRLKAAVGELPEKSKLQEIYQELTEL-----KAAVGELPEKSKLQEIYQELTQLKAAVGE 140
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLH 218
P+ + +T L + +L
Sbjct: 141 LPDQSKQQQIYQELTDLKT-----AFERLG 165
Score = 56.7 bits (138), Expect = 9e-10
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 213 ELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
EL + LQ + LT L + + ++ L + L + + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 273 CLKMLPS 279
L L +
Sbjct: 61 ELTRLKA 67
Score = 45.1 bits (108), Expect = 9e-06
Identities = 18/148 (12%), Positives = 31/148 (20%), Gaps = 50/148 (33%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ + +LT P L ++ L
Sbjct: 52 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK---------------------- 89
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSV---NLRSNQLKGTII---LGNYGNLTTLDVSEN 114
V GEL +L T + +G + L
Sbjct: 90 -----------------AAV-GELPEKSKLQEIYQEL--TELKAAVGELPEKSKLQEIYQ 129
Query: 115 SIESL--DLGALNRLESIKCSRNQLKTL 140
+ L +G L + +L L
Sbjct: 130 ELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 28.6 bits (65), Expect = 3.4
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP 38
+ + +LT+ P ++ L
Sbjct: 121 KSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLK 158
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 110 bits (278), Expect = 3e-27
Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 21/230 (9%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA-----LNRLESIKCSRN 135
T + L SN+L+ + LT L +S N + + L+ + S N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 136 QLKTLV---LNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD-WI 186
+ T+ L L + ++ L+ + S L +LDIS+ +
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 187 DTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLF 244
+ LE + + N F EL L L LS +L L ++SL+ L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ N+ L + + L+VL+ S N + + + +++ L L
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
Score = 100 bits (252), Expect = 9e-24
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 16/197 (8%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
T + S L ++ G + T L++ N ++SL G ++L QL L L+
Sbjct: 10 TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKL-------TQLTKLSLSS 61
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
+ L + L++LD+S+N + ++ +LE + H+ + Q
Sbjct: 62 NGLSFKGCCSQSDFGT------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115
Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNS-INILPQLFLQNSS 262
+ L L L +S + I ++SL+ L + NS
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 263 KLKVLNISKNCLKMLPS 279
L L++S+ L+ L
Sbjct: 176 NLTFLDLSQCQLEQLSP 192
Score = 88.5 bits (220), Expect = 1e-19
Identities = 50/261 (19%), Positives = 82/261 (31%), Gaps = 63/261 (24%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLP-VFLRHPMSPLNNVIEHGI 56
L + + N L+ S LK+L + N + + FL
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE------------ 101
Query: 57 AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSE 113
+L ++ + + LK + + NL LD+S
Sbjct: 102 --------------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 114 NSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLD 173
G N L S L+ L + G+S + L L LD
Sbjct: 136 THTRVAFNGIFNGLSS-------LEVLKMAGNSFQENFL-PDIFTEL------RNLTFLD 181
Query: 174 ISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP- 231
+S +LE L ++ L+ + SHN L + + + L L L S N + +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKK 240
Query: 232 -SLIRQIASLKYLFLQSNSIN 251
L +SL +L L N
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261
Score = 47.3 bits (113), Expect = 6e-06
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
++ + LTS+P+ I +S L L+SN + LP ++L L++S N L
Sbjct: 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 279 SLQKGFY-LLNISQLRL 294
+ + ++ L L
Sbjct: 69 CCSQSDFGTTSLKYLDL 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 112 bits (282), Expect = 1e-26
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
+ N+ + + L ++ ++ SL ++ ++ ++N L +L
Sbjct: 38 KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPE 97
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
+SL + A +N+L +L PA L+HLD+ N+L LP+ LE I A +N++
Sbjct: 98 LPASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTMLPELP---ALLEYINADNNQL 152
Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
T LP L L + N+LT LP L SL+ L + +N + LP + ++N
Sbjct: 153 TMLPEL-----PTSLEVLSVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHH 204
Query: 263 ---KLKVLNISKNCLKMLP 278
+N + +P
Sbjct: 205 SEETEIFFRCRENRITHIP 223
Score = 108 bits (272), Expect = 3e-25
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 14/214 (6%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTLV 141
+T + + N L + +L LD +N + +L +L L NQL L
Sbjct: 82 ITVLEITQNAL--ISLPELPASLEYLDACDNRLSTLPELPASLKHL---DVDNNQLTMLP 136
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
+ L + A NN+L L P L+ L + N+L LP+ ++ LE + S N
Sbjct: 137 ELPALLEYINADNNQLTML--PELPTSLEVLSVRNNQLTFLPELPES---LEALDVSTNL 191
Query: 202 ITQLPSQFF-CRELGKLHT-LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
+ LP+ + + NR+T +P I + + L+ N ++ + L
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251
Query: 260 NSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
+ + + M Q + +
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
Score = 101 bits (253), Expect = 8e-23
Identities = 58/277 (20%), Positives = 87/277 (31%), Gaps = 55/277 (19%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
E +++R +L+ P N P++ L QN + LP
Sbjct: 61 FSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELP------------------- 99
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L ++ N+L + + +L LDV N + L
Sbjct: 100 ---------------------ASLEYLDACDNRL--STLPELPASLKHLDVDNNQLTMLP 136
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
LE I NQL L +SL + NN+L L P L+ LD+S N LE
Sbjct: 137 -ELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFL--PELPESLEALDVSTNLLE 193
Query: 181 SLPDWIDTCPELET----IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
SLP E NRIT +P L T+ L N L+S
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPLSSRI--RES 249
Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
++ Q ++ + L +
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
Score = 95.4 bits (237), Expect = 7e-21
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 30/193 (15%)
Query: 104 GNLTTL--DVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI 161
N +L + N+I + + + + L G + N+ SL+
Sbjct: 8 NNNFSLSQNSFYNTISGTYADYFSAWD-------KWEKQALPGEN-------RNEAVSLL 53
Query: 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
+ L ++ L SLPD + P++ + + N + LP L L
Sbjct: 54 KECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPE-----LPASLEYLD 106
Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
NRL++LP L ASLK+L + +N + +LP+L + L+ +N N L MLP L
Sbjct: 107 ACDNRLSTLPELP---ASLKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPELP 159
Query: 282 KGFYLLNISQLRL 294
+L++ +L
Sbjct: 160 TSLEVLSVRNNQL 172
Score = 64.6 bits (157), Expect = 4e-11
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 17/148 (11%)
Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTC-PELETIFASHNRITQLP 206
+S++ N SL + YN + + + E +
Sbjct: 1 MSIMLPINNNFSLS----------QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV 50
Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
S + + LQL+ L+SLP + + L + N++ LP+L + L+
Sbjct: 51 SLLKECLINQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELP----ASLEY 104
Query: 267 LNISKNCLKMLPSLQKGFYLLNISQLRL 294
L+ N L LP L L++ +L
Sbjct: 105 LDACDNRLSTLPELPASLKHLDVDNNQL 132
Score = 43.8 bits (103), Expect = 1e-04
Identities = 35/286 (12%), Positives = 82/286 (28%), Gaps = 60/286 (20%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ D N LT P + L+ LS N+++ LP
Sbjct: 142 LEYINADNNQLTMLP---ELPTSLEVLSVRNNQLTFLPELPES----------------- 181
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG-TIILGNYGNLTT----LDVSENS 115
L ++++ +N L+ + + EN
Sbjct: 182 -----------------------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 116 IESL--DLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHL 172
I + ++ +L+ +I N L + + + S + + +S H
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278
Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPS----QFFCRELGKLHTLQLSFNRLT 228
++ P+ + + + F L + + +
Sbjct: 279 PLADAVTAWFPE-----NKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE 333
Query: 229 SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
+ + + ++++ L QS ++ ++ L N+ K L
Sbjct: 334 QVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 111 bits (280), Expect = 2e-26
Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 51/296 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ + DR + G + L ++ + N+++ + P+ L
Sbjct: 48 VTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDIT-----PLKNLTK---------- 91
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L + + +NQ+ L N NLT L + N I +D
Sbjct: 92 -----------------------LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128
Query: 121 -LGALNRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
L L L ++ S N + + L+G + + ++ N++ L L+ LDIS N+
Sbjct: 129 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ + + LE++ A++N+I+ + L L L L+ N+L + +L +
Sbjct: 189 VSDISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLT 243
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+L L L +N I+ L L +KL L + N + + L L ++ L L
Sbjct: 244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAG---LTALTNLEL 294
Score = 107 bits (270), Expect = 3e-25
Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 13/214 (6%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
L +++ SN++ +L NL +L + N I + LG L L+ + + NQLK +
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ + ++L + NN++ +L +L L + N++ ++ + L + + N
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN 297
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
++ + L L L L FN ++ + + + L+ LF +N ++ + L N
Sbjct: 298 QLEDISP---ISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDVS--SLAN 351
Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ + L+ N + L L L I+QL L
Sbjct: 352 LTNINWLSAGHNQISDLTPLAN---LTRITQLGL 382
Score = 106 bits (268), Expect = 7e-25
Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL--V 141
L + L SN + L +L L + L L LE + S N++ + +
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
++L S+IA NN++ + L L ++ N+L+ + + + L + ++N+
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ 254
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
I+ L L KL L+L N+++++ L + +L L L N + + + N
Sbjct: 255 ISNLAP---LSGLTKLTELKLGANQISNISPL-AGLTALTNLELNENQLEDIS--PISNL 308
Query: 262 SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L L + N + + + L + +L
Sbjct: 309 KNLTYLTLYFNNISDISPVSS---LTKLQRLFF 338
Score = 106 bits (266), Expect = 1e-24
Identities = 57/296 (19%), Positives = 114/296 (38%), Gaps = 51/296 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L + N LT+ + +L + N+I+ + P++ L N
Sbjct: 70 LTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-----PLANLTN---------- 113
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT + L +NQ+ L N NL L++S N+I +
Sbjct: 114 -----------------------LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150
Query: 121 -LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
L L L+ + L ++L + +NK+ + V + L+ L + N+
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ + + L+ + + N++ + + L L L L+ N++++L L +
Sbjct: 211 ISDITP-LGILTNLDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNLAPL-SGLT 265
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L L L +N I+ + L + L L +++N L+ + + L N++ L L
Sbjct: 266 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISPISN---LKNLTYLTL 316
Score = 106 bits (266), Expect = 1e-24
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
E L + T+ + +TTL I+S+D + LN L I S NQL +
Sbjct: 25 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ N + L+ ++ NN++ + L L + N++ + + L + S
Sbjct: 85 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143
Query: 200 NRITQLPSQFFCRELGKLH------------------TLQLSFNRLTSLPSLIRQIASLK 241
N I+ + + L +L L +S N+++ + L ++ +L+
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLE 202
Query: 242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L +N I+ + L + L L+++ N LK + +L L N++ L L
Sbjct: 203 SLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDL 250
Score = 105 bits (264), Expect = 2e-24
Identities = 61/297 (20%), Positives = 113/297 (38%), Gaps = 53/297 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L + N +T+ + L L + N IS + +S L +
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-----ALSGLTS---------- 157
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L ++ NQ+ L N L LD+S N + +
Sbjct: 158 -----------------------LQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDIS 193
Query: 121 -LGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
L L LES+ + NQ+ + + ++L + N+L+ + L LD++ N
Sbjct: 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
++ +L + +L + N+I+ + L L L+L+ N+L + I +
Sbjct: 254 QISNLAP-LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLEDISP-ISNL 308
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+L YL L N+I+ + + + +KL+ L N + + SL L NI+ L
Sbjct: 309 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSSLAN---LTNINWLSA 360
Score = 102 bits (257), Expect = 1e-23
Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 10/246 (4%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
L S+ +NQ+ LG NL L ++ N ++ + L +L L + + NQ+ L
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ + L + G N++ ++ L +L+++ N+LE + I L + N
Sbjct: 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
I+ + L KL L N+++ + SL + ++ +L N I+ L L N
Sbjct: 320 NISDISPV---SSLTKLQRLFFYNNKVSDVSSL-ANLTNINWLSAGHNQISDLTPL--AN 373
Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLV 320
+++ L ++ P K + + + G + A I S DI L
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433
Query: 321 QSIPRI 326
+
Sbjct: 434 SYTNEV 439
Score = 95.4 bits (238), Expect = 4e-21
Identities = 40/217 (18%), Positives = 90/217 (41%), Gaps = 15/217 (6%)
Query: 82 GELTSVN-LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKT 139
G L S + + + + ++ L+++ +++ R +K+
Sbjct: 1 GPLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS 60
Query: 140 L--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFA 197
+ V ++L + NN+L + +L + ++ N++ + + L +
Sbjct: 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF 257
+N+IT + + L L+ L+LS N ++ + +L + SL+ L + ++ P
Sbjct: 120 FNNQITDIDPL---KNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQVTDLKP--- 172
Query: 258 LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L N + L+ L+IS N + + L K L N+ L
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAK---LTNLESLIA 206
Score = 83.9 bits (208), Expect = 2e-17
Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 63/273 (23%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L + + N ++ +L L N+IS++ P++ L
Sbjct: 245 LTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-----PLAGLTA---------- 288
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT++ L NQL+ + N NLT L + N+I +
Sbjct: 289 -----------------------LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325
Query: 121 -LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+ +L +L+ + N++ +S +A + L +N++
Sbjct: 326 PVSSLTKLQRLFFYNNKVSD--------VSSLANLTNINW------------LSAGHNQI 365
Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
L + + + + T P + + + P+ I S
Sbjct: 366 SDLTP-LANLTRITQLGLNDQAWTNAPVNYK--ANVSIPNTVKNVTGALIAPATISDGGS 422
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+ N + ++ S + + +
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 112 bits (281), Expect = 3e-26
Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 40/282 (14%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL----DLGALNRLESIKCSRNQL 137
L S+NL NQ+ G + L + N ++ + D +++ + +I S N++
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 138 KTL-----------VLNGSSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPD 184
++ G ++ S+ NN++ + + L +++ N L +P
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474
Query: 185 W--------IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
L +I N++T+L F L L + LS+N + P+
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534
Query: 237 IASLKYLFLQSNSINILPQLF------LQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNI 289
++LK +++ + + L L I N ++ + + +L+I
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594
Query: 290 S-----QLRLPGFCNSDALIGIFDSGDN-GDIASTLVQSIPR 325
+ L C D DI I R
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 106 bits (267), Expect = 2e-24
Identities = 57/319 (17%), Positives = 105/319 (32%), Gaps = 75/319 (23%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF-PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L + N +TE P N F +++ LS A N++ ++P ++
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF--DAKSVSV--------- 403
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---------LGNYGNLTTLD 110
+++++ N++ N+++++
Sbjct: 404 ------------------------MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 111 VSENSIESL---DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
+S N I + L SI N L + N + N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY----------- 488
Query: 168 RLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFF----CRELGKLHTLQ 221
L +D+ +N+L L D T P L I S+N ++ P+Q + G +
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 222 LSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-- 278
NR P I SL L + SN I + + N + VL+I N +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLS 605
Query: 279 ----SLQKGFYLLNISQLR 293
++ G Y+L + +
Sbjct: 606 YVCPYIEAGMYMLFYDKTQ 624
Score = 99.3 bits (248), Expect = 4e-22
Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 30/225 (13%)
Query: 84 LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENS-IESL--DLGALNRLESIKCSRNQLK 138
+ N Q T N +LT ++V + L L AL ++ I + N+
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
Query: 139 TLVLNGSSL--ISVIAGNNKLQSLIVS-------PRPA------RLQHLDISYNELESLP 183
+ ++ K+Q + + P +L L+ YN+LE
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346
Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL--IRQIASLK 241
+ +L ++ ++N+IT++P+ F ++ L + N+L +P++ + ++ +
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405
Query: 242 YLFLQSNSINILPQLFLQ-------NSSKLKVLNISKNCLKMLPS 279
+ N I + + +N+S N + P
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450
Score = 97.4 bits (243), Expect = 2e-21
Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 30/234 (12%)
Query: 83 ELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+ T + SN + T + + L + + + ++ E+ + Q KT
Sbjct: 184 KDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-YAQQYKT 240
Query: 140 LVLNGSSLIS----VIAGNNKLQSLIVSPRPA------RLQHLDISYNELESLPDWID-- 187
L +L + L L P +Q ++++ N S D
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKL-----PTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 188 -------TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
+++ I+ +N + P + +++ KL L+ +N+L L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355
Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L L N I +P F + +++ L+ + N LK +P++ + +S +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409
Score = 87.0 bits (216), Expect = 3e-18
Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 44/241 (18%)
Query: 82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIKC 132
G +T ++L G + +G L L + + + + + A E +
Sbjct: 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140
Query: 133 SRNQLKTLVLNGSSLISV-------IAGNNKLQSLIVSPR-PARLQHLDISYNELESLPD 184
R + ++ I + + +S+ S R + + N + +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCR---------------ELGKLHTLQ----LSFN 225
+ +L + ++ + L L +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260
Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINILPQLF--------LQNSSKLKVLNISKNCLKML 277
LT LP+ ++ + ++ + + N QL K++++ I N LK
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Query: 278 P 278
P
Sbjct: 321 P 321
Score = 72.4 bits (178), Expect = 2e-13
Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 40/227 (17%)
Query: 98 IILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLVL--------NGSS 146
+ L + G +T L + +G L LE + + K S
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 147 LISVIAGNNKLQSLIVSPRPA----RLQHLDISYNELE-SLPDWIDTCPELETIFASHNR 201
Q V P L I+ + + S+ + I N
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLT--------------------SLPSLIRQIASLK 241
IT + L KL + + + + L
Sbjct: 195 ITFVSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252
Query: 242 YLFLQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287
+ + + + LP FL+ +++++N++ N L+ + L
Sbjct: 253 DVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Score = 48.9 bits (117), Expect = 3e-06
Identities = 30/243 (12%), Positives = 53/243 (21%), Gaps = 84/243 (34%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF--------PRLKFLSAAQNRISHLPVFLRHPMSPLNNVI 52
L + N LTE P N L + N+++ L R + L
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR--ATTLPY-- 514
Query: 53 EHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTL 109
L ++L N N L
Sbjct: 515 -------------------------------LVGIDLSYNSFSK--FPTQPLNSSTLKGF 541
Query: 110 DVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARL 169
+ D N+ I S L
Sbjct: 542 GIRNQ----RDA-----------QGNRTLR------EWPEGIT---LCPS---------L 568
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
L I N++ + + I P + + N + + C + L +++
Sbjct: 569 TQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVC-PYIEAGMYMLFYDKTQD 625
Query: 230 LPS 232
+
Sbjct: 626 IRG 628
Score = 41.6 bits (98), Expect = 6e-04
Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 211 CRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINI---------LPQLFLQN 260
G++ L L + +P I Q+ L+ L L S+ + +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ ++ K + P ++ + +
Sbjct: 137 QKQKMRMHYQKTFVDYDPRED----FSDLIKDCI 166
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 110 bits (278), Expect = 6e-26
Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 13/204 (6%)
Query: 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA-----LNRLESIKCSRNQ 136
L + SN+ + +L LD+S N + + L+ + S N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 137 LKTL---VLNGSSLISVIAGNNKLQSLI---VSPRPARLQHLDISYNELESLPDWI-DTC 189
+ T+ L L + ++ L+ + V L +LDIS+ + I +
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSN 248
LE + + N + EL L L LS +L L ++SL+ L + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 249 SINILPQLFLQNSSKLKVLNISKN 272
+ +P + L+ + + N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 105 bits (263), Expect = 5e-24
Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 8/203 (3%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-- 141
++S +L S ++ L++ L L+ + + N+
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 142 LNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELESLPDWIDTCPELETIFA 197
++ SL + N L L++LD+S+N + ++ +LE +
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSI-NILPQ 255
H+ + Q+ L L L +S + ++SL+ L + NS
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 256 LFLQNSSKLKVLNISKNCLKMLP 278
L L++S+ L+ L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLS 486
Score = 97.5 bits (243), Expect = 1e-21
Identities = 53/324 (16%), Positives = 108/324 (33%), Gaps = 56/324 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ--DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
L+E V N + F + + L+ L + N+I + + + +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL- 184
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDV------- 111
+ G E R L + LR+N ++ L L+V
Sbjct: 185 -SLNPMNFIQPGAFKEIR-------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 112 --SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAG----------NNKLQS 159
+E ++E D AL L ++ +L L +I + + ++
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 160 L---------------------IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS 198
+ + + L+ L + N+ + +D P LE + S
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLS 355
Query: 199 HNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL 256
N ++ SQ L L LSFN + ++ S + L++L Q +++ + +
Sbjct: 356 RNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 257 -FLQNSSKLKVLNISKNCLKMLPS 279
+ L L+IS ++ +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFN 438
Score = 95.2 bits (237), Expect = 8e-21
Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 84 LTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
+++L N L+ + ++ L LD+S I++++ GA L+ L ++ + N ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 139 TL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESL--PDWIDTCP 190
+L +G SSL ++A L SL P L+ L++++N ++S P++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 191 ELETIFASHNRITQLPSQFFCRELGKLH----TLQLSFNRLTSLPSLIRQIASLKYLFLQ 246
LE + S N+I + R L ++ +L LS N + + + L L L+
Sbjct: 150 NLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 247 SNSINI-LPQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQLRL 294
+N ++ + + +Q + L+V + + +L+ +G L I + RL
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Score = 92.5 bits (230), Expect = 6e-20
Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 26/217 (11%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
+ I + LD+S N + L + +L+ L L+
Sbjct: 10 ITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSR 61
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRIT 203
+ ++ G QSL + L L ++ N ++SL L+ + A +
Sbjct: 62 CEIQTIEDGA--YQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
L + L L L ++ N + S P + +L++L L SN I + L+
Sbjct: 114 SLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 262 SKLKV----LNISKNCLKMLPSLQKGFYLLNISQLRL 294
++ + L++S N + + F + + +L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLTL 207
Score = 79.0 bits (195), Expect = 1e-15
Identities = 40/324 (12%), Positives = 96/324 (29%), Gaps = 67/324 (20%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
+ + N L SFP L+ L ++ I + +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------------- 76
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENS 115
L+++ L N ++ +L L E +
Sbjct: 77 -------------------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 116 IESLDLGALNRLESIKC---SRNQLKTLVLNG-----SSLISVIAGNNKLQSLI------ 161
+ SL+ + L+++K + N +++ L ++L + +NK+QS+
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
+ P LD+S N + + L + +N + + + L L +
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
Query: 222 LSFNRLTSLPSLIR----QIASLKYLFLQSNSINILPQLFLQNSS------KLKVLNISK 271
L + +L + + L L ++ + L + ++
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 272 NCLKMLPSLQKGFYLLNISQLRLP 295
++ + F ++ +
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCK 315
Score = 77.1 bits (190), Expect = 4e-15
Identities = 51/330 (15%), Positives = 90/330 (27%), Gaps = 70/330 (21%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L + N + L+ L A + ++ L P+ L
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE---NFPIGHLKT--------- 125
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSI 116
L +N+ N ++ + N NL LD+S N I
Sbjct: 126 ------------------------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 117 ESLDLGALNRLESIK-------CSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVSPRP 166
+S+ L L + S N + + L + NN ++
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 167 ARLQHLDISYNELESLPDW-------IDTCPELETIFASHNRITQLPSQFFC-----REL 214
L L++ L + L + R+ L L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
+ + L + + ++L L + P L L++ LK L + N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKG 337
Query: 275 KMLPSLQKGFYL--LNIS--QLRLPGFCNS 300
S L L++S L G C+
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Score = 76.7 bits (189), Expect = 5e-15
Identities = 49/321 (15%), Positives = 94/321 (29%), Gaps = 69/321 (21%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
LQ+ +L LK L+ A N I L S L N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTN--------- 150
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLT----TLDVSE 113
L ++L SN+++ L + +LD+S
Sbjct: 151 ------------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 114 NSIESLDLGALN--RLESIKCSRNQLKTLVLNG-----------SSLISVIAGNNKLQSL 160
N + + GA RL + N V+ ++ L+
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 161 IVSP----RPARLQHLDISYNEL--ESLPDWIDTCPELETIFASHNRITQLPSQFFCREL 214
S ++ ++Y + + + D + + + I ++ +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
L + F + +L ++ SLK L SN + L+ L++S+N L
Sbjct: 307 QHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359
Query: 275 KMLPSLQKGFY-LLNISQLRL 294
+ + ++ L L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDL 380
Score = 60.5 bits (147), Expect = 8e-10
Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 79/239 (33%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N + N +L+ L + + + S ++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSL--------- 420
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI-E 117
L +++ + I +L L ++ NS E
Sbjct: 421 ---------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
+ L + L LD+S
Sbjct: 460 NFLPDIFTELRN---------------------------------------LTFLDLSQC 480
Query: 178 ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
+LE L ++ L+ + + N++ +P F R L L + L N I
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCPRID 538
Score = 45.9 bits (109), Expect = 3e-05
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C E+ T Q +P + S K L L N + L + +L+VL++S
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 271 KNCLKMLPS 279
+ ++ +
Sbjct: 61 RCEIQTIED 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 111 bits (279), Expect = 6e-26
Identities = 49/293 (16%), Positives = 93/293 (31%), Gaps = 31/293 (10%)
Query: 1 LQEFRVDRNDLTE-FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+ EFR+ + + +S A I +L +H ++I + +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
D L S+ L N+ + +L+ LD+S N++
Sbjct: 323 PTLDLPF-----------------LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365
Query: 120 DLGA-----LNRLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVS---PRPAR 168
+ N L + S N + + L + ++ L+ + +
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 169 LQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227
L +LDISY + D I L T+ + N L L LS +L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 228 TSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ + + L+ L + N++ L L L+ S N ++
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Score = 105 bits (264), Expect = 5e-24
Identities = 54/313 (17%), Positives = 91/313 (29%), Gaps = 57/313 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
Q + R L +FP P LK L+ N+ S + P
Sbjct: 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALP---------------- 350
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSI 116
L+ ++L N L + +L LD+S N
Sbjct: 351 ----------------------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 117 ESLD--LGALNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNKLQSLIVS--PRPA 167
+ L L+ + + LK + L+ + +
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 168 RLQHLDISYNELES--LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
L L ++ N + L + L + S ++ Q+ F L +L L +S N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHN 507
Query: 226 RLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGF 284
L L S Q+ SL L N I + L N++ N + + QK
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL 567
Query: 285 YLLNISQLRLPGF 297
+ + L
Sbjct: 568 QWVKEQKQFLVNV 580
Score = 104 bits (262), Expect = 7e-24
Identities = 51/301 (16%), Positives = 89/301 (29%), Gaps = 27/301 (8%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ N + +L L+ N S ++ + L + H +
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS--SNIMKTCLQNLAGLHVHRLILGE 240
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSI 116
+D E I E E ++T R N++ + ++ SI
Sbjct: 241 FKDERNLE---IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 117 ESLDLGA-LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
+ L+ + +S+ R QLK L S+ NK L +LD+
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357
Query: 175 SYNELESLPD---WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
S N L L + S N + + F L +L L + L +
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVT 415
Query: 232 --SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK---------MLPSL 280
S + L YL + + I + L L ++ N K +L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 281 Q 281
Sbjct: 476 T 476
Score = 98.2 bits (245), Expect = 1e-21
Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
+++L N LK N+ L LD+S IE+++ A + L L L+
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-------LSNLI 86
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHN 200
L G+ + S G+ L L++L +L SL I L+ + +HN
Sbjct: 87 LTGNPIQSFSPGS--FSGL------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQ 255
I + L L + LS+N + ++ L L + N I+ +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 256 LFLQNSSKLKVLNISKNCL--KMLPSLQKGFYLLNISQLRLPGFCNSDAL 303
Q L L + N ++ + + L++ +L L F + L
Sbjct: 199 QAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Score = 97.0 bits (242), Expect = 2e-21
Identities = 38/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
+ +L + + +D+S N ++ L + + ++L+ L L+
Sbjct: 14 ITYQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNF-------SELQWLDLSR 65
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRIT 203
+ ++ L L +L ++ N ++S P LE + A ++
Sbjct: 66 CEIETIEDKA--WHGL------HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINILP----QLF 257
L S +L L L ++ N + S LP+ + +L ++ L N I + Q
Sbjct: 118 SLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 258 LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+N L++S N + + + F + + +L L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELTL 211
Score = 96.3 bits (240), Expect = 4e-21
Identities = 40/241 (16%), Positives = 86/241 (35%), Gaps = 27/241 (11%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLK 138
L+++ L N ++ +L L E + SL+ +G L L+ + + N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 139 TLVLNG-----SSLISVIAGNNKLQSLI------VSPRPARLQHLDISYNELESLPDWID 187
+ L ++L+ V N +Q++ + P LD+S N ++ + D
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS-------- 239
+L + N + + + L LH +L +L S
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 240 -LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPG 296
+ L + + + + ++++ +K L + K F L+I + +L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321
Query: 297 F 297
F
Sbjct: 322 F 322
Score = 93.2 bits (232), Expect = 3e-20
Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 50/323 (15%)
Query: 1 LQEFRVDRNDLTEF--PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH---- 54
L++ V N + P + L + + N I + V + V
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 55 --GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDV- 111
I +++ F+ +L + LR N I+ NL L V
Sbjct: 190 LNPIDFIQDQAFQG---------------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234
Query: 112 --------SENSIESLDLGALNRLESIK-----CSRNQLKTLVLNG----SSLISVIAGN 154
E ++E + + L + + + + +++ ++
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294
Query: 155 NKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCREL 214
++ L P+ + Q L I +L+ P P L+++ + N+ + + L
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVA---L 349
Query: 215 GKLHTLQLSFNRLTSLPSLIRQIA---SLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
L L LS N L+ SL++L L N I+ F +L+ L+
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEELQHLDFQH 408
Query: 272 NCLKMLPSLQKGFYLLNISQLRL 294
+ LK + L + L +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDI 431
Score = 89.3 bits (222), Expect = 7e-19
Identities = 52/302 (17%), Positives = 101/302 (33%), Gaps = 68/302 (22%)
Query: 8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
L++ P D K + + N + L + S +
Sbjct: 20 DQKLSKVP--DDIPSSTKNIDLSFNPLKILK---SYSFSNFSE----------------- 57
Query: 68 EDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALN 125
L ++L +++ +L+ L ++ N I+S G+ +
Sbjct: 58 ----------------LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Query: 126 RLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES--LP 183
L S L+ LV + L S+ + + L L+ L++++N + S LP
Sbjct: 102 GLTS-------LENLVAVETKLASLESFP--IGQL------ITLKKLNVAHNFIHSCKLP 146
Query: 184 DWIDTCPELETIFASHNRITQLPSQFFC---RELGKLHTLQLSFNRLTSLPSLIRQIASL 240
+ L + S+N I + +L +S N + + Q L
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206
Query: 241 KYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQL 292
L L+ N + + + LQN + L V + K +L+ +G + I +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 293 RL 294
RL
Sbjct: 267 RL 268
Score = 86.2 bits (214), Expect = 7e-18
Identities = 50/318 (15%), Positives = 86/318 (27%), Gaps = 69/318 (21%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L+ L LK L+ A N I L S L N
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--LPAYFSNLTN--------- 154
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG------TIILGNYGNLTTLDVSE 113
L V+L N ++ + N +LD+S
Sbjct: 155 ------------------------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 114 NSIESLDLGALN--RLESIKCSRNQLKTLVLNGSS-----------LISVIAGNNKLQSL 160
N I+ + A +L + N + ++ ++ L+
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 161 IVSP----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELG 215
S + ++Y S + + + I L
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--- 307
Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
K +L + +L P+L + LK L L N +I + L L++S+N L
Sbjct: 308 KWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALS 363
Query: 276 MLPSLQKGFYLLNISQLR 293
+ L + LR
Sbjct: 364 FSGCCS--YSDLGTNSLR 379
Score = 77.4 bits (191), Expect = 4e-15
Identities = 52/297 (17%), Positives = 93/297 (31%), Gaps = 81/297 (27%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N N L+ L + + + S ++
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-----EFSAFLSL--------- 423
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
+L +++ K G + LT+L +L
Sbjct: 424 ---------------------EKLLYLDISYTNTK-IDFDGIFLGLTSL-------NTLK 454
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
+ + N K L+ + L LD+S +LE
Sbjct: 455 M-----------AGNSFKDNTLSNV-----------FANTT------NLTFLDLSKCQLE 486
Query: 181 SLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIA 238
+ DT L+ + SHN + L S + +L L TL SFNR+ + L
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 239 SLKYLFLQSNSINILPQL--FLQ--NSSKLKVLNISK-NCLKMLPSLQKGFYLLNIS 290
SL + L +NS+ + + FLQ K ++N+ + C P +L+ +
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC--ATPVEMNTSLVLDFN 600
Score = 45.0 bits (107), Expect = 5e-05
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C E+ T Q +L+ +P I +S K + L N + IL N S+L+ L++S
Sbjct: 7 CIEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS 64
Query: 271 KNCLKMLPS 279
+ ++ +
Sbjct: 65 RCEIETIED 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 107 bits (270), Expect = 9e-26
Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 84 LTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
+ S+NL +N + L N L L V+E+ ++ + + L L S+ + NQ++ +
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ + +SL A N++ + RL L I N++ L + +L +
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
N+I+ + + ++L KL L + N+++ + + ++ L LFL +N + +
Sbjct: 253 NQISDINA---VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIG 308
Query: 260 NSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ L L +S+N + + L L +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLAS---LSKMDSADF 340
Score = 104 bits (263), Expect = 7e-25
Identities = 26/214 (12%), Positives = 79/214 (36%), Gaps = 12/214 (5%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-- 140
++ + + + + S+ + L + + + ++ ++
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ ++L + N++ + +L +L I N++ + + L ++ + +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNED 120
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
I+ + L K+++L L N S S + + L YL + + + + + N
Sbjct: 121 NISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIAN 175
Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ L L+++ N ++ + L L ++
Sbjct: 176 LTDLYSLSLNYNQIEDISPLAS---LTSLHYFTA 206
Score = 101 bits (254), Expect = 1e-23
Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-V 141
L + + +++K + N +L +L ++ N IE + L +L L NQ+ +
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP 216
Query: 142 LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ + L S+ GNNK+ L ++L L+I N++ + + +L+ + N
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN 275
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQ 259
+I+ + L +L++L L+ N+L + +I + +L LFL N I + L
Sbjct: 276 QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLA 330
Query: 260 NSSKLKVLNISKNCLK 275
+ SK+ + + +K
Sbjct: 331 SLSKMDSADFANQVIK 346
Score = 48.3 bits (116), Expect = 3e-06
Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 44/185 (23%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L F N +T+ + RL L N+I+ L P++ L+ + I +
Sbjct: 201 LHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-----PLANLSQLTWLEIGTNQ 254
Query: 61 EEDFEQDEDGIIVERREPEVKG--ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
D VK +L +N+ SNQ+ +L N L +L ++ N + +
Sbjct: 255 ISDI-------------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301
Query: 119 LD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
D +G L L ++ S+N + I +A +K+ S D +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITD--------IRPLASLSKMDS------------ADFA 341
Query: 176 YNELE 180
++
Sbjct: 342 NQVIK 346
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 106 bits (266), Expect = 2e-25
Identities = 42/228 (18%), Positives = 94/228 (41%), Gaps = 23/228 (10%)
Query: 84 LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
L ++ L +N++ + I L L +S+N + + + L ++ N+++
Sbjct: 80 LYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRK 137
Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPEL 192
+ V +G ++ + G N L++ P +L +L IS +L +P D L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETL 195
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSIN 251
+ HN+I + + KL+ L L N++ + + + +L+ L L +N ++
Sbjct: 196 NELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 252 ILPQLFLQNSSKLKVLNISKNCLKMLPS-----LQKGFYLLNISQLRL 294
+P + L+V+ + N + + + G + + L
Sbjct: 255 RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Score = 99.3 bits (248), Expect = 4e-23
Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 23/229 (10%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLKTL 140
L + + N L I +L L + +N I + G + L ++ C N L+
Sbjct: 104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 141 -----VLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPEL 192
+G L + KL + P+ P L L + +N+++++ +L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
+ HN+I + + L L L L N+L+ +P+ + + L+ ++L +N+I
Sbjct: 220 YRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278
Query: 253 LPQ------LFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
+ F + +++ N + F + + ++
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327
Score = 94.7 bits (236), Expect = 2e-21
Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 29/228 (12%)
Query: 84 LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
T ++L++N + + + +L L + N I + A L +L+ + S+N
Sbjct: 56 TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 137 LKTLVLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELES--LPDWIDT 188
L + N SSL+ + +N+++ + P+ + +++ N LE+
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKV---PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQS 247
+L + S ++T +P L+ L L N++ ++ + + L L L
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
N I ++ L L+ L++ N L +P+ G L + + L
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---GLPDLKLLQVVYL 271
Score = 89.7 bits (223), Expect = 9e-20
Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 12/205 (5%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKT 139
L V LK + + T LD+ N I L L L ++ N++
Sbjct: 34 HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELET 194
+ + L + N L I P+ L L I N + +P + +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP 254
I N + + + KL+ L++S +LT +P + +L L L N I +
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIE 209
Query: 255 QLFLQNSSKLKVLNISKNCLKMLPS 279
L SKL L + N ++M+ +
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIEN 234
Score = 88.5 bits (220), Expect = 2e-19
Identities = 42/286 (14%), Positives = 88/286 (30%), Gaps = 73/286 (25%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
LQ+ + +N L E P N L L NRI +P + S L N
Sbjct: 104 LQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRKVP---KGVFSGLRN---------- 148
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGN---YGNLTTLDVSENSIE 117
+ + + N L+ + L L +SE +
Sbjct: 149 -----------------------MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
+ L + N+++ + L ++L L + +N
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAI------------ELEDLLRY------SKLYRLGLGHN 227
Query: 178 ELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---- 232
++ + + + P L + +N+++++P+ L L + L N +T +
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD--LKLLQVVYLHTNNITKVGVNDFC 285
Query: 233 ---LIRQIASLKYLFLQSNSI---NILPQLFLQNSSKLKVLNISKN 272
+ A + L +N + + P F + + +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQFGNY 330
Score = 55.0 bits (133), Expect = 2e-08
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 165 RPARLQHLDISYNELESLP-DWIDTCP-----ELETIFASHNRITQLPSQFFCRELGKLH 218
A +L+SLP + CP L + S + +P +
Sbjct: 2 EEASGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPD----TT 57
Query: 219 TLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
L L N ++ L + + L L L +N I+ + + KL+ L ISKN L +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 278 PS 279
P
Sbjct: 118 PP 119
Score = 45.4 bits (108), Expect = 3e-05
Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 59/209 (28%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L R+ LT P +D L L N+I + + + +
Sbjct: 174 LNYLRISEAKLTGIP--KDLPETLNELHLDHNKIQAIELED---LLRYSK---------- 218
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIE 117
L + L NQ++ I L L L + N +
Sbjct: 219 -----------------------LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254
Query: 118 SL--DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
+ L L L+ + N + + G N + + A + +
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKV------------GVNDFCPVGFGVKRAYYNGISLF 302
Query: 176 YNELESL---PDWIDTCPELETIFASHNR 201
N + P + I + +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 109 bits (274), Expect = 2e-25
Identities = 61/296 (20%), Positives = 103/296 (34%), Gaps = 42/296 (14%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEH 54
LQE + L+E P LK L + N+ +L L N
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 55 GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLD 110
+ E+ E L ++L + ++ + L N +L +L+
Sbjct: 340 ELGTGCLENLEN-----------------LRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNKLQSLIV 162
+S N SL A +LE + + +LK L + ++ L
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 163 S--PRPARLQHLDISYNELESL----PDWIDTCPELETIFASHNRITQLPSQFFCRELGK 216
LQHL++ N + + T LE + S ++ + F L
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKM 501
Query: 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
++ + LS NRLTS YL L SN I+I+ L S+ + +N+ +N
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 107 bits (268), Expect = 1e-24
Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 43/318 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
L + R + + S RL L N + + L
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT--- 115
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDV 111
GI+ + L S+ L SN + L LD
Sbjct: 116 -GISSIDFIPLHN--------------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160
Query: 112 SENSIESLDLGALNRLESIKC-----SRNQLKTL---VLNGSSLISVIAGNNKLQSLIVS 163
N+I L ++ L+ + N + + + + S+ G + +I
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
Query: 164 P----RPARLQHLDISYNELESLPDWI---DTCPELETIFASHNRITQLPSQFFCRELGK 216
L + E + + +E+I + + S F
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSG 279
Query: 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276
L L L+ L+ LPS + +++LK L L +N L Q+ N L L+I N ++
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 277 LPSLQKGFYLLNISQLRL 294
L N+ +L L
Sbjct: 340 ELGTGCLENLENLRELDL 357
Score = 105 bits (264), Expect = 4e-24
Identities = 44/315 (13%), Positives = 106/315 (33%), Gaps = 59/315 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L+ + ++ + L+ L N IS + + P
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE------------- 153
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLT--TLDVSENS 115
+L ++ ++N + + + T +L+++ N
Sbjct: 154 -----------------------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 116 IESLDLGALN--RLESIKCSRNQLKTLVLNG------SSLISVIAGNNKLQSL----IVS 163
I ++ GA + +S+ Q ++ G SL + + +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 164 PRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222
++ +++ + ++ + L+ + + +++LPS L L L L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVL 308
Query: 223 SFNRLTSLPSL-IRQIASLKYLFLQSNSINI-LPQLFLQNSSKLKVLNISKNCLKMLPSL 280
S N+ +L + SL +L ++ N+ + L L+N L+ L++S + ++
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 281 QKGFY-LLNISQLRL 294
L ++ L L
Sbjct: 369 NLQLRNLSHLQSLNL 383
Score = 105 bits (263), Expect = 6e-24
Identities = 56/316 (17%), Positives = 115/316 (36%), Gaps = 40/316 (12%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
++ ND+ + L+ + L +F S + ++ +
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-LVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES 118
+ED + E + S+NL+ + + L LD++ +
Sbjct: 240 DEDISPAVFEGLCEMS-------VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292
Query: 119 LD--LGALNRLESIKCSRNQ--------------LKTLVLNGSSLISVIAGNNKLQSLIV 162
L L L+ L+ + S N+ L L + G++ + G L++L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLE- 350
Query: 163 SPRPARLQHLDISYNELESLP---DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
L+ LD+S++++E+ + L+++ S+N L ++ F +E +L
Sbjct: 351 -----NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLEL 404
Query: 220 LQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
L L+F RL S + + LK L L + ++I + L+ LN+ N
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 278 PSLQKGFYLLNISQLR 293
+ L + +L
Sbjct: 465 NIQKTNS-LQTLGRLE 479
Score = 100 bits (251), Expect = 2e-22
Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 53/297 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
++ + ++ N F L+ L +S LP L +S L N E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFE 314
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTLD 110
+ + + LT ++++ N + + L N NL LD
Sbjct: 315 N------------------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 111 VSENSIESLDL--GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPAR 168
+S + IE+ D L L L++L L+ + +S+ + +
Sbjct: 357 LSHDDIETSDCCNLQLRNLSH-------LQSLNLSYNEPLSLKTEA--FKEC------PQ 401
Query: 169 LQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
L+ LD+++ L+ L+ + SH+ + Q F L L L L N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGNH 460
Query: 227 LTSL----PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ ++ + L+ L L ++ + Q + + +++S N L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Score = 98.9 bits (247), Expect = 5e-22
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 18/228 (7%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
+ N L NLT LD++ I + +RL+++ + N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 139 TL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLPD-WIDTCPE 191
+ L+G +L + + S+ P L+ L + N + S+ +
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 192 LETIFASHNRITQLPSQFFCRELGKLH--TLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
L+ + +N I L + L + +L L+ N + + A + L
Sbjct: 155 LKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 250 IN--ILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRL 294
I L L + + + P++ +G +++ + L
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Score = 96.6 bits (241), Expect = 3e-21
Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 23/223 (10%)
Query: 86 SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS 145
+ N + L I + L+ S N + ++ +RL L L L
Sbjct: 16 TYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI-------NLTFLDLTRC 67
Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ 204
+ + QS RL L ++ N L + + + L+ +F I+
Sbjct: 68 QIYWIHEDT--FQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119
Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
+ L +L L N ++S+ LK L Q+N+I+ L + + + +
Sbjct: 120 IDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 264 LKV--LNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALI 304
LN++ N + + F L G N +
Sbjct: 179 ATNLSLNLNGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIF 219
Score = 72.4 bits (178), Expect = 1e-13
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
+ + L +P + E + S N + + + F R L L L L+ ++
Sbjct: 15 KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYW 71
Query: 230 LPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ + L L L +N + + + L LK L + + +
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122
Score = 53.1 bits (128), Expect = 2e-07
Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 72/239 (30%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L+ + + L D P L+ L+ N + + + L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR--------- 477
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
L + L L + + +D+S N +
Sbjct: 478 ------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDIS 175
S + AL + LK + LN + +N + ++ S P ++ + +++
Sbjct: 514 SSSIEAL----------SHLKGIYLNLA--------SNHISIILPSLLPILSQQRTINLR 555
Query: 176 YN------ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
N +W + + + C L ++LS L+
Sbjct: 556 QNPLDCTCSNIYFLEWYK----------ENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 46.9 bits (112), Expect = 1e-05
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
+E+ K T L +P + S + L N + + L L+++
Sbjct: 10 EKEVNK--TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT 65
Query: 271 KNCLKMLPS 279
+ + +
Sbjct: 66 RCQIYWIHE 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 104 bits (261), Expect = 4e-25
Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
VN L + + T L +SEN + + L L +L L L+
Sbjct: 12 HLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLNLD 63
Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
+L L V L LD+S+N+L+SLP T P L + S NR+T
Sbjct: 64 ----------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSS 262
LP R LG+L L L N L +LP L+ L+ L L +N++ LP L
Sbjct: 114 SLPLGAL-RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 263 KLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L L + +N L +P + F + L
Sbjct: 173 NLDTLLLQENSLYTIP--KGFFGSHLLPFAFL 202
Score = 86.3 bits (214), Expect = 7e-19
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 84 LTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGA-LNRLESIKCSRNQLKTL 140
T ++L N L L Y LT L++ + L + L L ++ S NQL++L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 141 --VLNG-SSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELESLPDWI-DTCPEL 192
+ +L + N+L SL LQ L + NEL++LP + P+L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
E + ++N +T+LP+ L L TL L N L ++P L + FL N
Sbjct: 151 EKLSLANNNLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 75.9 bits (187), Expect = 2e-15
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPELETIFASHNR 201
+S + V L +L P P L +S N L + L +
Sbjct: 10 ASHLEVNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
+T+L L L TL LS N+L SLP L + + +L L + N + LP L+
Sbjct: 67 LTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 262 SKLKVLNISKNCLKMLPS 279
+L+ L + N LK LP
Sbjct: 124 GELQELYLKGNELKTLPP 141
Score = 47.4 bits (113), Expect = 5e-06
Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 74/201 (36%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIAE 58
L + N L P + P L L + NR++ LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL------------------ 120
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENS 115
G+ GEL + L+ N+LK T+ +L L L ++ N+
Sbjct: 121 ----------RGL----------GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA----RLQH 171
+ L G LN L L TL+L N L ++ P+ L
Sbjct: 160 LTELPAGLLNGL-------ENLDTLLLQ----------ENSLYTI---PKGFFGSHLLPF 199
Query: 172 LDISYN------ELESLPDWI 186
+ N E+ W+
Sbjct: 200 AFLHGNPWLCNCEILYFRRWL 220
Score = 47.0 bits (112), Expect = 7e-06
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
++ + LT+LP + L L N + L ++L LN+
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 271 KNCLKMLPSLQKGFYLLNISQLRL 294
+ L L L + L L
Sbjct: 64 RAELTKLQVDGT---LPVLGTLDL 84
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 107 bits (270), Expect = 7e-25
Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 17/210 (8%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLK 138
L + SN+ + +L LD+S N + L+ + S N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 139 TL---VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESL-PDWIDTC 189
T+ L L + ++ L+ + L +LDIS+ +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSN 248
LE + + N + EL L L LS +L L P+ ++SL+ L + N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLP 278
+ L + + L+VL+ S N +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Score = 104 bits (261), Expect = 9e-24
Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 10/204 (4%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-- 141
++S +L S ++ L++ L L+ + + N+
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 142 LNGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWIDTCPELETIFA 197
++ SL + N L + L++LD+S+N + ++ +LE +
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSI--NILP 254
H+ + Q+ L L L +S + ++SL+ L + NS N LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 255 QLFLQNSSKLKVLNISKNCLKMLP 278
+F L L++S+ L+ L
Sbjct: 464 DIF-TELRNLTFLDLSQCQLEQLS 486
Score = 98.6 bits (246), Expect = 7e-22
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 26/236 (11%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
+++L N L+ ++ L LD+S I++++ GA L + L TL+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-------SHLSTLI 82
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHN 200
L G+ + S+ G L LQ L L SL I L+ + +HN
Sbjct: 83 LTGNPIQSLALGA--FSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKY----LFLQSNSINILPQ 255
I + L L L LS N++ S+ + +R + + L L N +N +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 256 LFLQNSSKLKVLNISKNCL--KMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDS 309
+ L L + N ++ + +G L + +L L F N L S
Sbjct: 195 GAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Score = 92.8 bits (231), Expect = 6e-20
Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
EL ++L +++ + +L+TL ++ N I+SL LGA + L S L+ L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-------LQKL 105
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL--PDWIDTCPELETIFAS 198
V ++L S+ N + L L+ L++++N ++S P++ LE + S
Sbjct: 106 VAVETNLASLE--NFPIGHL------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 199 HNRITQLPSQFFCRELGKLH----TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI-L 253
N+I + R L ++ +L LS N + + + L L L++N ++ +
Sbjct: 158 SNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216
Query: 254 PQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQLRL 294
+ +Q + L+V + + +L+ +G L I + RL
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Score = 90.5 bits (225), Expect = 3e-19
Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 26/217 (11%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
+ I + LD+S N + L + +L+ L L+
Sbjct: 10 ITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSR 61
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRIT 203
+ ++ G QSL + L L ++ N ++SL L+ + A +
Sbjct: 62 CEIQTIEDGA--YQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
L + L L L ++ N + S P + +L++L L SN I + L+
Sbjct: 114 SLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 262 SKLKV----LNISKNCLKMLPSLQKGFYLLNISQLRL 294
++ + L++S N + + F + + +L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLTL 207
Score = 85.9 bits (213), Expect = 7e-18
Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 28/245 (11%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLK 138
L+++ L N ++ +L L E ++ SL+ +G L L+ + + N ++
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 139 TLVL-----NGSSLISVIAGNNKLQSLIVSP------RPARLQHLDISYNELESLPDWID 187
+ L N ++L + +NK+QS+ + P LD+S N + +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR----QIASLKYL 243
L + +N + + + L L +L + +L + + L L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 244 FLQSNSINILPQLF------LQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLP 295
++ + L + + ++ ++ + F L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317
Query: 296 GFCNS 300
F
Sbjct: 318 QFPTL 322
Score = 79.3 bits (196), Expect = 9e-16
Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 33/237 (13%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLT----TLDVSENSIESLDLGALN--RLESIKCSRN 135
L ++L SN+++ L + +LD+S N + + GA RL + N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 136 QLKTLV-------LNGSSLISVIAGNNKLQSLIVSPRPA---RLQHLDISYNELESL--- 182
V L G + ++ G + + + + L +L I L L
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 183 ----PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
D + + + I ++ + L+L + P+L +
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLK--LK 325
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
SLK L SN + L+ L++S+N L + + ++ L L
Sbjct: 326 SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Score = 77.4 bits (191), Expect = 4e-15
Identities = 47/299 (15%), Positives = 89/299 (29%), Gaps = 84/299 (28%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N + N +L+ L + + + S ++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLR-------- 421
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSI-E 117
L +++ + I +L L ++ NS E
Sbjct: 422 ----------------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
+ L + L LD+S
Sbjct: 460 NFLPDIFTELRN---------------------------------------LTFLDLSQC 480
Query: 178 ELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLI 234
+LE L P ++ L+ + SHN L + + + L L L S N + + L
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 235 RQIASLKYLFLQSNSI--NILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNIS 290
+SL +L L N Q FLQ + L + ++ PS ++G +L+++
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598
Score = 42.7 bits (101), Expect = 3e-04
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C E+ T Q +P + S K L L N + L + +L+VL++S
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 271 KNCLKMLPS 279
+ ++ +
Sbjct: 61 RCEIQTIED 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 103 bits (258), Expect = 1e-24
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 19/201 (9%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
+ L N++ NLT L + N + +D A L L+ L
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-------LEQL 85
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASH 199
L+ ++ + + L RL L + L+ L L+ ++
Sbjct: 86 DLSDNAQLRSVD-PATFHGLG------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFL 258
N + LP F R+LG L L L NR++S+P R + SL L L N + +
Sbjct: 139 NALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 259 QNSSKLKVLNISKNCLKMLPS 279
++ +L L + N L LP+
Sbjct: 198 RDLGRLMTLYLFANNLSALPT 218
Score = 80.8 bits (200), Expect = 4e-17
Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 72/261 (27%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
Q + N ++ P + L L N ++ + F + L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLAL------- 81
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
L ++L N ++ G L TL +
Sbjct: 82 --------------------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RL 169
++ L G L + L+ L L +N LQ+L P L
Sbjct: 116 GLQELGPGLFRGLAA-------LQYLYLQ----------DNALQAL---PDDTFRDLGNL 155
Query: 170 QHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
HL + N + S+P+ L+ + NR+ + F R+LG+L TL L N L+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLS 214
Query: 229 SLPS-LIRQIASLKYLFLQSN 248
+LP+ + + +L+YL L N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 43.1 bits (102), Expect = 1e-04
Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 72/201 (35%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
L +DR L E L++L N + LP F L N
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGN------- 154
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
LT + L N++ ++ +L L + +N
Sbjct: 155 --------------------------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187
Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---IVSPRPARLQH 171
+ + A L L TL L N L +L ++P A LQ+
Sbjct: 188 RVAHVHPHAFRDLGR-------LMTLYLF----------ANNLSALPTEALAPLRA-LQY 229
Query: 172 LDISYN------ELESLPDWI 186
L ++ N L W+
Sbjct: 230 LRLNDNPWVCDCRARPLWAWL 250
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 218 HTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
T L ++P I A+ + +FL N I+ +P + L +L + N L +
Sbjct: 14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
Query: 278 PS 279
+
Sbjct: 72 DA 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 105 bits (265), Expect = 1e-24
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 25/218 (11%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
E ++L N++K ++ +L L+++EN + +++ GA N L + L+TL
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-------LRTL 85
Query: 141 VLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELESLPD-WIDTCPELETIFA 197
L +N+L+ + + + L LDIS N++ L D L+++
Sbjct: 86 GLR----------SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256
N + + + F L L L L LTS+P+ + + L L L+ +IN +
Sbjct: 136 GDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ +LKVL IS + Y LN++ L +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSI 231
Score = 104 bits (260), Expect = 6e-24
Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 61/281 (21%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
L + + N + LK L N + ++ F S LN+
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-----SGLNS------- 153
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENS 115
L + L L T L + L L + +
Sbjct: 154 --------------------------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
I ++ + RL +LK L ++ + + N L L I+
Sbjct: 188 INAIRDYSFKRLY-------RLKVLEISHWPYLDTMTPN--------CLYGLNLTSLSIT 232
Query: 176 YNELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234
+ L ++P + L + S+N I+ + EL +L +QL +L +
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEPYA 291
Query: 235 -RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
R + L+ L + N + L + + L+ L + N L
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 102 bits (257), Expect = 2e-23
Identities = 58/288 (20%), Positives = 96/288 (33%), Gaps = 56/288 (19%)
Query: 7 DRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEHGIAEER 60
R P + + L +NRI L L N++
Sbjct: 19 HRKRFVAVP--EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------ 70
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIES 118
VE L ++ LRSN+LK + NLT LD+SEN I
Sbjct: 71 ------------VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLD 173
L L LK+L + +N L + A L+ L
Sbjct: 119 LLDYMFQDL-------YNLKSLEVG----------DNDLVYI---SHRAFSGLNSLEQLT 158
Query: 174 ISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF-NRLTSLP 231
+ L S+P + L + H I + F + L +L L++S L ++
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMT 217
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+L L + ++ +P L +++ L+ LN+S N + +
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Score = 100 bits (250), Expect = 1e-22
Identities = 53/295 (17%), Positives = 118/295 (40%), Gaps = 57/295 (19%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L+E ++ N ++ ++ L+ L NR+ +P+ + +S
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------------- 104
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIE 117
LT +++ N++ + + NL +L+V +N +
Sbjct: 105 -----------------------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 118 SLDLGA---LNRLESIKCSRNQLKTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA--- 167
+ A LN LE + + L ++ L+ LI + + + ++ +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI---RDYSFKR 198
Query: 168 --RLQHLDISYNE-LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
RL+ L+IS+ L+++ L ++ +H +T +P R L L L LS+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-RHLVYLRFLNLSY 257
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N ++++ ++ ++ L+ + L + ++ + + L+VLN+S N L L
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Score = 64.4 bits (157), Expect = 4e-11
Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 81/256 (31%)
Query: 1 LQEFRVDRNDLTEFPGNQDS-FPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L++ +++ +LT P S L L I+ + + L
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYR--------- 201
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
L + + T+ NLT+L ++ ++
Sbjct: 202 ------------------------LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
++ A+ L L+ L++SYN
Sbjct: 238 AVPYLAVRHLVY---------------------------------------LRFLNLSYN 258
Query: 178 ELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIR 235
+ ++ + L+ I ++ + F R L L L +S N+LT+L S+
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 236 QIASLKYLFLQSNSIN 251
+ +L+ L L SN +
Sbjct: 318 SVGNLETLILDSNPLA 333
Score = 55.9 bits (135), Expect = 2e-08
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 188 TC-PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
C + + R +P L L NR+ +L L+ L L
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTE----TRLLDLGKNRIKTLNQDEFASFPHLEELEL 63
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
N ++ + N L+ L + N LK++P
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97
Score = 43.9 bits (104), Expect = 1e-04
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C + + R ++P I + L L N I L Q + L+ L ++
Sbjct: 7 CECSAQDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 271 KNCLKMLPS 279
+N + +
Sbjct: 65 ENIVSAVEP 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 107 bits (268), Expect = 2e-24
Identities = 57/306 (18%), Positives = 103/306 (33%), Gaps = 55/306 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
++ + + ++ LK L+ A N+I+ + L+N
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA---DEAFYGLDN--------- 315
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIE 117
L +NL N L + + +D+ +N I
Sbjct: 316 ------------------------LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 118 SLDLGALNRLESIKC---SRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
+ LE ++ N L T+ S+ + NKL +L + +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTI-HFIPSIPDIFLSGNKLVTL--PKINLTANLIHL 408
Query: 175 SYNELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-- 230
S N LE+L P L+ + + NR + E L L L N L
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 231 ----PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP--SLQKGF 284
+ ++ L+ L+L N +N LP + + L+ L+++ N L +L L
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528
Query: 285 YLLNIS 290
+L+IS
Sbjct: 529 EILDIS 534
Score = 103 bits (258), Expect = 3e-23
Identities = 64/302 (21%), Positives = 116/302 (38%), Gaps = 42/302 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIE---H 54
L E R+ L++ F L L ++N+I L L LN++
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--LHPSFGKLNSLKSIDFS 156
Query: 55 G--IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG--------NYG 104
I E + E P L+ +L +N L + +
Sbjct: 157 SNQIFLVCEHELE------------PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
L LDVS N G + S++Q +L+L ++ G + ++ +
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNA----ISKSQAFSLILA-HHIMGAGFGFHNIKDPDQNT 259
Query: 165 ----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
+ ++HLD+S+ + SL +T +L+ + ++N+I ++ + F L L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQV 318
Query: 220 LQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L LS+N L L S + + Y+ LQ N I I+ + KL+ L++ N L +
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Query: 279 SL 280
+
Sbjct: 379 FI 380
Score = 94.5 bits (235), Expect = 2e-20
Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 27/247 (10%)
Query: 87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
R L T + L +S N I ++ + LE QL+ L L
Sbjct: 9 AFYRFCNL--TQVPQVLNTTERLLLSFNYIRTVTASSFPFLE-------QLQLLELGSQY 59
Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQL 205
I ++L L+ LD+ +++ L D L + ++
Sbjct: 60 TPLTID-KEAFRNL------PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112
Query: 206 P-SQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQLFLQN-- 260
+ R L L L LS N++ SL ++ SLK + SN I ++ + L+
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172
Query: 261 SSKLKVLNISKNCLKMLPSLQ-----KGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDI 315
L +++ N L S+ F + + L + G + + G F + +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 316 ASTLVQS 322
A +L+ +
Sbjct: 233 AFSLILA 239
Score = 92.9 bits (231), Expect = 6e-20
Identities = 59/348 (16%), Positives = 106/348 (30%), Gaps = 68/348 (19%)
Query: 1 LQEFRVDRNDLT--EFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGI 56
L + +N + + LK + + N+I + L+
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 57 AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--------------LGN 102
+ P L +++ N I L
Sbjct: 185 ------SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 103 YGNLTTLDVSENSIESLDLGAL-----NRLESIKCSRNQLKTL---VLNG-SSLISVIAG 153
++ ++I+ D + + + S + +L V L +
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 154 NNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWIDT-CPELETIFASHNRITQLPS 207
NK+ + A LQ L++SYN L L P++ I N I +
Sbjct: 299 YNKINKI---ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL----------- 256
Q F + L KL TL L N LT++ + S+ +FL N + LP++
Sbjct: 356 QTF-KFLEKLQTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKINLTANLIHLSE 410
Query: 257 ----------FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
FL L++L +++N Q ++ QL L
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Score = 85.6 bits (212), Expect = 1e-17
Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 38/235 (16%)
Query: 83 ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
+L + L S TI N NL LD+ + I L A L L ++
Sbjct: 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108
Query: 137 LKTLVLNG------SSLISVIAGNNKLQSLIVSPRPA---RLQHLDISYNELESLPD--- 184
L VL +L + N+++SL + P L+ +D S N++ + +
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGK-----LHTLQLSFNRLTSLPS------- 232
L + N + S + + + L L +S N T +
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228
Query: 233 ------LIRQIASLKYLFLQSNSINILPQLFLQN--SSKLKVLNISKNCLKMLPS 279
+ + ++I Q S ++ L++S + L S
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283
Score = 55.2 bits (133), Expect = 4e-08
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 40/219 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEH---- 54
LQ + N LT P + + + N++ LP + + N +E+
Sbjct: 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419
Query: 55 ----GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-------ILGNY 103
+ + Q+ + P L + L N L+ +
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 104 GNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
+L L ++ N + SL G + L + L+ L LN +N+L L +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTA-------LRGLSLN----------SNRLTVLSHN 522
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
PA L+ LDIS N+L + L + +HN+
Sbjct: 523 DLPANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKF 559
Score = 42.5 bits (100), Expect = 3e-04
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C G++ F LT +P ++ + + L L N I + +L++L +
Sbjct: 2 CSFDGRI--AFYRFCNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56
Query: 271 KNCLKM 276
+
Sbjct: 57 SQYTPL 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 103 bits (259), Expect = 2e-24
Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 21/225 (9%)
Query: 84 LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
L ++ L +N++ + I L L +S+N ++ L L+ ++ N++
Sbjct: 78 LHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 135
Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWIDTCPE 191
+ V NG + +I V G N L+S + +L ++ I+ + ++P P
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPS 193
Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSI 250
L + N+IT++ + + L L L LSFN ++++ + + L+ L L +N +
Sbjct: 194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 251 NILPQLFLQNSSKLKVLNISKNCLKMLP--SLQKGFYLLNISQLR 293
+P + ++V+ + N + + Y +
Sbjct: 253 VKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296
Score = 99.3 bits (248), Expect = 4e-23
Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 23/211 (10%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTL 140
L + L NQLK + L L V EN I + LN++ ++ N LK+
Sbjct: 102 LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 141 VLNG------SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPE 191
+ L + + + ++ P+ P L L + N++ +
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
L + S N I+ + + L L L+ N+L +P + ++ ++L +N+I+
Sbjct: 218 LAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
Query: 252 IL------PQLFLQNSSKLKVLNISKNCLKM 276
+ P + + +++ N ++
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 97.4 bits (243), Expect = 2e-22
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 30/230 (13%)
Query: 83 ELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRN 135
+ ++L++N++ T I N NL TL + N I + GA L ++ S+N
Sbjct: 53 DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 136 QLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESL---PDWI 186
QLK L +L + N++ + + ++ +++ N L+S
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKV---RKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFL 245
+L I + IT +P L L L N++T + + + + +L L L
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
NSI+ + L N+ L+ L+++ N L +P G I + L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYL 270
Score = 89.3 bits (222), Expect = 1e-19
Identities = 43/287 (14%), Positives = 94/287 (32%), Gaps = 74/287 (25%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + +N L E P L+ L +N I+ + + + LN
Sbjct: 102 LERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVR---KSVFNGLNQ---------- 146
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSI 116
+ V L +N LK + I L+ + +++ +I
Sbjct: 147 -----------------------MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
++ G L + N++ + L+ L L L +S+
Sbjct: 184 TTIPQGLPPSLTELHLDGNKITKV------------DAASLKGL------NNLAKLGLSF 225
Query: 177 NELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--- 232
N + ++ + P L + ++N++ ++P + + + L N ++++ S
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDF 283
Query: 233 ----LIRQIASLKYLFLQSNSI---NILPQLFLQNSSKLKVLNISKN 272
+ AS + L SN + I P F + + +
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY 329
Score = 74.7 bits (184), Expect = 9e-15
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P LD+ N++ + L T+ +N+I+++ F L KL L LS
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSK 109
Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
N+L LP + +L+ L + N I + + +++ V+ + N LK
Sbjct: 110 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Score = 51.5 bits (124), Expect = 3e-07
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 178 ELESLPDWIDTCP-----ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP- 231
E+ + CP L + S + ++P L L N++T +
Sbjct: 14 EVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPD----TALLDLQNNKITEIKD 69
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ + +L L L +N I+ + KL+ L +SKN LK LP
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Score = 41.9 bits (99), Expect = 3e-04
Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 86/235 (36%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L R+ ++T P Q P L L N+I+ + + LNN
Sbjct: 173 LSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVD---AASLKGLNN---------- 217
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L + L N I ++D
Sbjct: 218 -----------------------LAKLGLSFNS----------------------ISAVD 232
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
G+L L+ L LN + L+ V G + +Q + + N +
Sbjct: 233 NGSLANTPH-------LRELHLNNNKLVKVPGGLADHKY---------IQVVYLHNNNIS 276
Query: 181 SLPD-------WIDTCPELETIFASHNRI--TQLPSQFFCRELGKLHTLQLSFNR 226
++ + + N + ++ F R + +QL +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNYK 330
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 105 bits (262), Expect = 5e-24
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
E NL+ + + ++ + + + I+S+ + L + + + N+L +
Sbjct: 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 81
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ N +L + NK++ L +L+ L + +N + + + P+LE+++ +
Sbjct: 82 PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 140
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
N+IT + L KL TL L N+++ + L + L+ L+L N I+ L L
Sbjct: 141 NKITDITVL---SRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLR--ALA 194
Query: 260 NSSKLKVLNISKN-CLKMLPSLQKGFYLLN 288
L VL + CL + Q + N
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Score = 100 bits (250), Expect = 2e-22
Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 13/214 (6%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
+ S +K + ++ + S+ LN ++ I + + +K++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ ++ + NKL + L L + N+++ L + +L+++ HN
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHN 119
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
I+ + L +L +L L N++T + L ++ L L L+ N I+ + L
Sbjct: 120 GISDING---LVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--PLAG 173
Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+KL+ L +SKN + L +L L N+ L L
Sbjct: 174 LTKLQNLYLSKNHISDLRALAG---LKNLDVLEL 204
Score = 35.1 bits (80), Expect = 0.063
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 39/140 (27%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N +T+ +L LS N+IS + P++ L
Sbjct: 133 LESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-----PLAGLTK---------- 176
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L ++ L N + L NL L++ +
Sbjct: 177 -----------------------LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213
Query: 121 LGALNRLESIKCSRNQLKTL 140
+ + L +N +L
Sbjct: 214 INHQSNLVVPNTVKNTDGSL 233
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 101 bits (254), Expect = 6e-24
Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 10/203 (4%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
+ + + T+ + +TTL + +++ + LN L ++ NQ+ L
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ N + + + N L+++ ++ LD++ ++ + + L+ ++
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
N+IT + L L L + +++ L L ++ L L N I+ + L
Sbjct: 139 NQITNISPL---AGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDIS--PLA 192
Query: 260 NSSKLKVLNISKNCLKMLPSLQK 282
+ L +++ N + + L
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLAN 215
Score = 95.9 bits (239), Expect = 5e-22
Identities = 49/275 (17%), Positives = 105/275 (38%), Gaps = 50/275 (18%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ ++++T+ Q + LSA ++ + + LNN
Sbjct: 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-----GVQYLNN---------- 64
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L + L+ NQ+ L N +T L++S N ++++
Sbjct: 65 -----------------------LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101
Query: 121 -LGALNRLESIKCSRNQLKTL-VLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
+ L ++++ + Q+ + L G S+L + N++ ++ LQ+L I
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
++ L + +L T+ A N+I+ + L L + L N+++ + L
Sbjct: 162 QVSDLTP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPL-ANT 216
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
++L + L + +I P + N L V N+ K
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNN---LVVPNVVKG 248
Score = 95.1 bits (237), Expect = 9e-22
Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 13/207 (6%)
Query: 91 SNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGSSL 147
+ N + ++++ L+ + ++ + T+ V ++L
Sbjct: 6 PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNL 65
Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
I + +N++ L ++ L++S N L+++ I ++T+ + +IT +
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP 124
Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVL 267
L L L L N++T++ L + +L+YL + + ++ L L N SKL L
Sbjct: 125 ---LAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTL 178
Query: 268 NISKNCLKMLPSLQKGFYLLNISQLRL 294
N + + L L N+ ++ L
Sbjct: 179 KADDNKISDISPLAS---LPNLIEVHL 202
Score = 43.9 bits (104), Expect = 9e-05
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 40/165 (24%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
LQ +D N +T L++LS ++S L P++ L+
Sbjct: 131 LQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-----PLANLSK---------- 174
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
LT++ N++ L + NL + + N I +
Sbjct: 175 -----------------------LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS 211
Query: 121 -LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
L + L + + + + ++ + V ++P
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256
Score = 40.1 bits (94), Expect = 0.001
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 197 ASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL 256
I + F L + + +T + + + L + +
Sbjct: 4 TQPTAINVI---FPDPALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIE-- 57
Query: 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+Q + L L + N + L L+ L I++L L
Sbjct: 58 GVQYLNNLIGLELKDNQITDLAPLKN---LTKITELEL 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 101 bits (254), Expect = 3e-23
Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 62/279 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
+ + N + N L+ L ++N I + F + L N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-----NGLAN------- 113
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
L ++ L N+L TI L L + N
Sbjct: 114 --------------------------LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNN 146
Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
IES+ A NR+ S L+ L L +S I+ + L + L++L++
Sbjct: 147 PIESIPSYAFNRIPS-------LRRLDLGELKRLSYIS-EGAFEGL------SNLRYLNL 192
Query: 175 SYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-L 233
+ L +P+ +L+ + S N ++ + F + L L L + +++ +
Sbjct: 193 AMCNLREIPNLTPL-IKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNA 250
Query: 234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+ SL + L N++ +LP L+ +++ N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 100 bits (250), Expect = 9e-23
Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
+NL NQ++ + +L L +S N I ++++GA L L +++ N+L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 138 KTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDIS-YNELESLPDWI- 186
T+ S L + NN ++S+ P A L+ LD+ L + +
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESI---PSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
+ L + + + ++P+ L KL L LS N L+++ + + L+ L++
Sbjct: 182 EGLSNLRYLNLAMCNLREIPN--LTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
+ I ++ + N L +N++ N L +LP
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Score = 73.2 bits (180), Expect = 5e-14
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
+ VI L+ + P + L++ N+++ + + LE + S N
Sbjct: 43 NQFSKVICVRKNLREV---PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQN 260
I + F L L+TL+L NRLT++P+ ++ LK L+L++N I +P
Sbjct: 100 IRTIEIGAF-NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 261 SSKLKVLNISK-NCLKMLPS 279
L+ L++ + L +
Sbjct: 159 IPSLRRLDLGELKRLSYISE 178
Score = 63.6 bits (155), Expect = 6e-11
Identities = 46/256 (17%), Positives = 76/256 (29%), Gaps = 82/256 (32%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIA 57
L + N LT P +F +LK L N I +P + + +
Sbjct: 114 LNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP----------- 160
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
+LR + LG L+ +
Sbjct: 161 ------------------------------SLRR------LDLGELKRLSYISE------ 178
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
GA L + L+ L L L+ + +L LD+S N
Sbjct: 179 ----GAFEGLSN-------LRYLNLA----------MCNLREIPNLTPLIKLDELDLSGN 217
Query: 178 ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIR 235
L ++ L+ ++ ++I + F L L + L+ N LT LP L
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 236 QIASLKYLFLQSNSIN 251
+ L+ + L N N
Sbjct: 277 PLHHLERIHLHHNPWN 292
Score = 49.7 bits (119), Expect = 2e-06
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C + + L +P I + + L L N I I+ ++ L++L +S
Sbjct: 39 CSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96
Query: 271 KNCLKMLPS 279
+N ++ +
Sbjct: 97 RNHIRTIEI 105
Score = 40.5 bits (95), Expect = 0.001
Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 70/195 (35%)
Query: 7 DRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFE 65
+ L+ + L++L+ A + +P +PL
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIK--------------- 208
Query: 66 QDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLG 122
L ++L N L I +L L + ++ I+ ++
Sbjct: 209 ------------------LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERN 249
Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---IVSPRPARLQHLDISYN-- 177
A + L+S L + L +N L L + +P L+ + + +N
Sbjct: 250 AFDNLQS-------LVEINLA----------HNNLTLLPHDLFTPLH-HLERIHLHHNPW 291
Query: 178 ----ELESLPDWIDT 188
++ L WI
Sbjct: 292 NCNCDILWLSWWIKD 306
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 102 bits (257), Expect = 3e-23
Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 25/211 (11%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLK 138
+ +++ L + + + + V + + + L+S++ S N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
Query: 139 TLVLNGS-------SLISVIAGNNKLQSLIVSPRP----ARLQHLDISYNELESLPDWID 187
L S SL +++ N L+S+ + L LDIS N +PD
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
++ + S I + + L L +S N L S + L+ L++
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQ----TLEVLDVSNNNLDSFSL---FLPRLQELYISR 460
Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N + LP L L V+ IS+N LK +P
Sbjct: 461 NKLKTLPDASL--FPVLLVMKISRNQLKSVP 489
Score = 96.3 bits (240), Expect = 3e-21
Identities = 46/305 (15%), Positives = 98/305 (32%), Gaps = 32/305 (10%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L E + L + S + L+ + + L +S + +
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
R + D + ++ +G + + + LK + + D + N +
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269
Query: 120 DLGALNRLESIKCSRN-QLKTLVLNGSSLISVIAG--------------NNKLQSLIVSP 164
+ + + + ++ L + L ++ N+K+ + P
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV---P 326
Query: 165 RPA-----RLQHLDISYNELESL----PDWIDTCPELETIFASHNRITQLPSQ-FFCREL 214
L+ LD+S N + P L+T+ S N + + L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
L +L +S N +P + +++L L S I ++ Q L+VL++S N L
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNL 443
Query: 275 KMLPS 279
Sbjct: 444 DSFSL 448
Score = 92.5 bits (230), Expect = 6e-20
Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 84 LTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
+ S++L N++ G L NL L + + I +++ A L S L+ L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-------LEHLD 80
Query: 142 LNGSSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLPD--WIDTCPELETIFA 197
L+ +N L SL S + L++L++ N ++L L+T+
Sbjct: 81 LS----------DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 198 SH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQ 255
+ +++ F L L+ L++ L + S ++ I + +L L + L +
Sbjct: 131 GNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 256 LFLQNSSKLKVLNISKNCLKMLP--SLQKGFYLLNISQLRLPG 296
+F S ++ L + L L + +L G
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Score = 78.2 bits (193), Expect = 2e-15
Identities = 51/334 (15%), Positives = 102/334 (30%), Gaps = 73/334 (21%)
Query: 9 NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDE 68
T P +K L + N+I+++ + N
Sbjct: 15 RSFTSIP--SGLTAAMKSLDLSFNKITYIG---HGDLRACAN------------------ 51
Query: 69 DGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALN 125
L + L+S+++ TI + G+L LD+S+N + SL
Sbjct: 52 ---------------LQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95
Query: 126 RLESIKC---SRNQLKTLVLNG-----SSLISV-IAGNNKLQSLIVSP--RPARLQHLDI 174
L S+K N +TL + ++L ++ I + L L+I
Sbjct: 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
Query: 175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
L + + + ++ + + L F L + L+L L
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFS 214
Query: 234 IRQIA---------SLKYLFLQSNSINILPQLF--LQNSSKLKVLNISKNCLKMLPSLQK 282
+ + + L S N L +L + S+++ + + N L +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274
Query: 283 GFY-------LLNISQLRLPGFCNSDALIGIFDS 309
+ I +L +P F L ++
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308
Score = 74.4 bits (183), Expect = 3e-14
Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 40/208 (19%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF----PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGI 56
L+ + N + E + P L+ L +QN + + + L N
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-TGEILLTLKN------ 388
Query: 57 AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG-TIILGNYGNLTTLDVSENS 115
LTS+++ N + L++S
Sbjct: 389 ---------------------------LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
I + LE + S N L + L L + NKL++L + L + IS
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481
Query: 176 YNELESLP-DWIDTCPELETIFASHNRI 202
N+L+S+P D L+ I+ N
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 73.2 bits (180), Expect = 8e-14
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
D S+P + ++++ S N+IT + R L L L +R+ ++
Sbjct: 10 CDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIE 66
Query: 232 -SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
+ SL++L L N ++ L + S LK LN+ N + L
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Score = 68.6 bits (168), Expect = 2e-12
Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 61/308 (19%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
LQ + + + G+ S L+ L + N +S L P+S L N +
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 54 HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
+ L ++ + + + I +L L+
Sbjct: 112 T-----------------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154
Query: 111 VSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQ 170
+ S+ + +L + + L L+ S ++ + S ++
Sbjct: 155 IKALSLRNYQSQSLKSIRD-------IHHLTLHLSESAFLLEIFADILS--------SVR 199
Query: 171 HLDISYNELESLPDWIDTCPE-LETIFASHNRITQLPSQFFCR---------ELGKLHTL 220
+L++ L E + R + L + F EL ++
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 221 QLSFNRLTSLPSLIRQI---------ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
+ N L + +++ L + + K+K + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 272 NCLKMLPS 279
+ + ++P
Sbjct: 320 SKVFLVPC 327
Score = 55.5 bits (134), Expect = 3e-08
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQ 246
+C T +PS + +L LSFN++T + +R A+L+ L L+
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
S+ IN + + L+ L++S N L L S
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 101 bits (254), Expect = 3e-23
Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 64/280 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
+ + N++ + L+ L +N I + F + L +
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-----NGLAS------- 124
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSE 113
L ++ L N L T+I L L +
Sbjct: 125 --------------------------LNTLELFDNWL--TVIPSGAFEYLSKLRELWLRN 156
Query: 114 NSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLD 173
N IES+ A NR+ L L L + I+ + L L++L+
Sbjct: 157 NPIESIPSYAFNRVP-------SLMRLDLGELKKLEYIS-EGAFEGL------FNLKYLN 202
Query: 174 ISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS- 232
+ ++ +P+ LE + S N ++ F L L L + ++++ +
Sbjct: 203 LGMCNIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERN 260
Query: 233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+ASL L L N+++ LP L L++ N
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 99.4 bits (248), Expect = 2e-22
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
+NL N ++ + +L L + NSI +++GA L L +++ N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 138 KTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDIS-YNELESLPDWI- 186
+ S L + NN ++S+ P A L LD+ +LE + +
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
+ L+ + I +P+ L L L++S N + ++SLK L++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPN--L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
++ ++++ + + L LN++ N L LP
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282
Score = 74.4 bits (183), Expect = 3e-14
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
+ V+ L + P+ P+ ++L++ N ++ + D LE + N
Sbjct: 54 NQFSKVVCTRRGLSEV---PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQN 260
I Q+ F L L+TL+L N LT +PS ++ L+ L+L++N I +P
Sbjct: 111 IRQIEVGAF-NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 261 SSKLKVLNISK-NCLKMLPS 279
L L++ + L+ +
Sbjct: 170 VPSLMRLDLGELKKLEYISE 189
Score = 60.9 bits (148), Expect = 5e-10
Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 86/258 (33%)
Query: 1 LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHG 55
L + N LT P +F +L+ L N I +P F + + +
Sbjct: 125 LNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAF-----NRVPS----- 172
Query: 56 IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENS 115
L ++L G L + SE +
Sbjct: 173 ----------------------------LMRLDL-----------GELKKLEYI--SEGA 191
Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
E L L+ + +K + L L L+ L++S
Sbjct: 192 FEGLF-----NLKYLNLGMCNIKDM--------------PNLTPL------VGLEELEMS 226
Query: 176 YNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SL 233
N + L+ ++ +++++ + F L L L L+ N L+SLP L
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDL 285
Query: 234 IRQIASLKYLFLQSNSIN 251
+ L L L N N
Sbjct: 286 FTPLRYLVELHLHHNPWN 303
Score = 56.7 bits (137), Expect = 9e-09
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 188 TC-PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFL 245
+C + + + ++++P L L N + + + R + L+ L L
Sbjct: 51 SCSNQFSKVVCTRRGLSEVPQGIPSN----TRYLNLMENNIQMIQADTFRHLHHLEVLQL 106
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
NSI + + L L + N L ++PS
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140
Score = 50.1 bits (120), Expect = 1e-06
Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
C + + + L+ +P I ++ +YL L N+I ++ ++ L+VL +
Sbjct: 50 CSCSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 271 KNCLKMLPS 279
+N ++ +
Sbjct: 108 RNSIRQIEV 116
Score = 41.3 bits (97), Expect = 7e-04
Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 72/194 (37%)
Query: 7 DRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREED 63
+ L + +F LK+L+ I +P +PL
Sbjct: 180 ELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVG------------- 219
Query: 64 FEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDL 121
L + + N +L L V + + ++
Sbjct: 220 --------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 122 GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---IVSPRPARLQHLDISYN- 177
A + L S L L L +N L SL + +P L L + +N
Sbjct: 260 NAFDGLAS-------LVELNLA----------HNNLSSLPHDLFTPLRY-LVELHLHHNP 301
Query: 178 -----ELESLPDWI 186
++ L W+
Sbjct: 302 WNCDCDILWLAWWL 315
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 96.7 bits (241), Expect = 2e-22
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
E NL+ + + ++ + + + I+S+ + L + + + N+L +
Sbjct: 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ N +L + NK++ L +L+ L + +N + + + P+LE+++ +
Sbjct: 85 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 143
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
N+IT + L KL TL L N+++ + L + L+ L+L N I+ L L
Sbjct: 144 NKITDITV---LSRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLR--ALA 197
Query: 260 NSSKLKVLNISKN-CLKMLPSLQKGFYLLN 288
L VL + CL + Q + N
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPN 227
Score = 87.8 bits (218), Expect = 2e-19
Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 13/209 (6%)
Query: 89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGS 145
+K + ++ + S+ LN ++ I + + +K++ +
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP 68
Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
++ + NKL + L L + N+++ L + +L+++ HN I+ +
Sbjct: 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI 127
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
L +L +L L N++T + L ++ L L L+ N I+ + L +KL+
Sbjct: 128 NG---LVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--PLAGLTKLQ 181
Query: 266 VLNISKNCLKMLPSLQKGFYLLNISQLRL 294
L +SKN + L +L L N+ L L
Sbjct: 182 NLYLSKNHISDLRALAG---LKNLDVLEL 207
Score = 66.2 bits (162), Expect = 3e-12
Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 151 IAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFF 210
I ++ + A ++ + + ++ I A+++ I +
Sbjct: 8 ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ---G 63
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
+ L + L L+ N+LT + L + +L +LFL N + L L++ KLK L++
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120
Query: 271 KNCLKMLPSLQK 282
N + + L
Sbjct: 121 HNGISDINGLVH 132
Score = 33.9 bits (78), Expect = 0.11
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 44/163 (26%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
L+ + N +T+ +L LS N+IS + PL + +
Sbjct: 136 LESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDI--------VPLAGLTK------- 179
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L ++ L N + L NL L++ +
Sbjct: 180 -----------------------LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
+ + L +N +LV +I+ + + V
Sbjct: 217 INHQSNLVVPNTVKNTDGSLV-----TPEIISDDGDYEKPNVK 254
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 95.0 bits (237), Expect = 6e-22
Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 84 LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
+++L N L + ++ L LD+S I++++ GA L+ L ++ + N
Sbjct: 30 TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 137 LKTL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLP--DWIDT 188
+++L +G SSL ++A L SL P L+ L++++N ++S ++
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 189 CPELETIFASHNRITQLPSQFFCRELGKL----HTLQLSFNRLTSLPSLIRQIASLKYLF 244
LE + S N+I + L ++ +L LS N + + + LK L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206
Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKN 272
L +N + +P + L+ + + N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 77.7 bits (192), Expect = 5e-16
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 154 NNKLQSLIVSP----RPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQ 208
N L+ L LQ LD+S E++++ D + L T+ + N I L
Sbjct: 37 FNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 209 FFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQ--LFLQNSSKLK 265
F L L L L SL + I + +LK L + N I F N + L+
Sbjct: 95 AF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLE 152
Query: 266 VLNISKNCLKMLPS 279
L++S N ++ +
Sbjct: 153 HLDLSSNKIQSIYC 166
Score = 73.1 bits (180), Expect = 2e-14
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 166 PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P ++LD+S+N L L + PEL+ + S I + + + L L TL L+
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTG 85
Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
N + SL ++SL+ L ++ L + + LK LN++ N ++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Score = 37.3 bits (87), Expect = 0.009
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+P + S K L L N + L + +L+VL++S+ ++ +
Sbjct: 17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Score = 31.9 bits (73), Expect = 0.48
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 37/135 (27%)
Query: 1 LQEFRVDRNDLTEFPGNQ--DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
L+E V N + F + + L+ L + N+I +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-------------------- 165
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG--NYGNLTTLDVSENSI 116
D R ++ S++L N + I G L L + N +
Sbjct: 166 --CTDL----------RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212
Query: 117 ESLDLGALNRLESIK 131
+S+ G +RL S++
Sbjct: 213 KSVPDGIFDRLTSLQ 227
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 97.1 bits (242), Expect = 9e-22
Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 39/300 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPR---LKFLSAAQNRISHL-PVFLRHPMSPLNNVIEHG- 55
L+ + + +L + + F L+ L N I + P M + +
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 56 -IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK-------GTIILGNY---G 104
+ EED T + L S L+ G GN
Sbjct: 165 KVKSICEEDLL------------NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---- 160
++TTLD+S N + + ++++L+L+ S + G+ +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDA----IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 161 IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
+ ++ D+S +++ +L + +LE + + N I ++ F L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLK 327
Query: 220 LQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L LS N L S+ S + + L+ L L N I L LK L + N LK +P
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 92.9 bits (231), Expect = 3e-20
Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 40/236 (16%)
Query: 84 LTSVNLRSNQLKGTIILGNY----GNLTTLDVSENSIESLDLGA----LNRLESIKCSRN 135
L + L L G ++ GN+ +L L + +N+I+ + + + R + + N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 136 QLKTL------VLNGSSLISVIAGNNKLQSL----------IVSPRPARLQHLDISYNEL 179
++K++ G + + LQ + + + LD+S N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 180 ESLP--------------DWIDTCPELETIFASHNRITQLPS-QFFCRELGKLHTLQLSF 224
+ I + H + F E + T LS
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+++ +L + L+ L L N IN + + L LN+S+N L + S
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Score = 80.2 bits (198), Expect = 3e-16
Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 35/255 (13%)
Query: 105 NLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNK 156
++ +D+S NSI L+ + L L+ +K + ++ N SSLI + N+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 157 LQSLIVSPRPA-------RLQHLDISYNELESL---PDWIDTCPELETIFASHNRITQLP 206
L L+ L ++ L+ ++ LE + N I ++
Sbjct: 91 FLQL-----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLI---RQIASLKYLFLQSNSINILPQLFLQNS-- 261
F + + H L L+FN++ S+ Q L L S ++ + + +L
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 262 ------SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDI 315
+ + L++S N K + + F + ++++ NS + F + D
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 316 ASTLVQSIPRILLEE 330
+ + + ++
Sbjct: 265 DNFTFKGLEASGVKT 279
Score = 64.8 bits (158), Expect = 3e-11
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
PA + ++D+S N + L + +L+ + + R L L L+L +
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLP 278
N+ L + +A+L+ L L +++ +L F + + L++L + N +K +
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 75/203 (36%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
++ + ++ + + F L+ L+ AQN I+ + F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF----------------- 319
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENS 115
G+ L +NL N L + + N L LD+S N
Sbjct: 320 -----------WGL----------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQ 170
I +L + L LK L L+ N+L+S+ P LQ
Sbjct: 359 IRALGDQSFLGLP-------NLKELALD----------TNQLKSV---PDGIFDRLTSLQ 398
Query: 171 HLDISYN-------ELESLPDWI 186
+ + N ++ L W+
Sbjct: 399 KIWLHTNPWDCSCPRIDYLSRWL 421
Score = 36.3 bits (84), Expect = 0.022
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 223 SFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
L +P L A + Y+ L NSI L + L+ L + + ++
Sbjct: 18 INRGLHQVPELP---AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74
Query: 283 GFYLLNISQLRL 294
L ++ L+L
Sbjct: 75 FRGLSSLIILKL 86
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 98.4 bits (246), Expect = 1e-21
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 15/224 (6%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLK--- 138
L + + N++ G + + NL LDVS N+ + LG + L+ + S N+L
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 139 -TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDT-CPELETI 195
+ + L + +N+ I LQ+L ++ N+ +PD++ C L +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 196 FASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLP-SLIRQIASLKYLFLQSNSIN- 251
S N +P F L +L LS N + LP + ++ LK L L N +
Sbjct: 300 DLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 252 ILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRL 294
LP+ S+ L L++S N + + +L L
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Score = 96.1 bits (240), Expect = 5e-21
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 29/200 (14%)
Query: 84 LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQL 137
L ++L N+ G I + G LT LD+S N G+ + LES+ S N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWI-DTCPELETI 195
+G + + K++ L + LD+S+NE LP+ + + L T+
Sbjct: 331 -----SGELPMDTLL---KMRGL---------KVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 196 FASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-I 252
S N + + L L L N T +P + + L L L N ++
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 253 LPQLFLQNSSKLKVLNISKN 272
+P L + SKL+ L + N
Sbjct: 434 IPS-SLGSLSKLRDLKLWLN 452
Score = 93.4 bits (233), Expect = 4e-20
Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 51/235 (21%)
Query: 84 LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSI------ESLDLGALNRLESIKCSR 134
L +N+ SN L +L LD+S NSI + L+ + S
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 135 NQ------------LKTLVLNG-------------SSLISVIAGNNKLQSLIVSPRPA-- 167
N+ L+ L ++ S+L + NKL
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF----SRAI 243
Query: 168 ----RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQ 221
L+ L+IS N+ +P L+ + + N+ T ++P L L
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGLD 300
Query: 222 LSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCL 274
LS N ++P + L+ L L SN+ + LP L LKVL++S N
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Score = 83.8 bits (208), Expect = 5e-17
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 28/238 (11%)
Query: 81 KGELTSVNLRSNQLKGTI--ILGNYG--NLTTLDVSENSIE---SLDLGALNRLESIKCS 133
L +++L SN G I L L L + N L + L S+ S
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 134 RNQLK----TLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SL 182
N L + + + S L + N L+ I P L+ L + +N+L +
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEI 482
Query: 183 PDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASL 240
P + C L I S+NR+T ++P L L L+LS N + ++P+ + SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 241 KYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL-LNISQLRLPG 296
+L L +N N +P + S K+ I+ + + + L G
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598
Score = 82.3 bits (204), Expect = 1e-16
Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 42/241 (17%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQLK 138
L + L++N G I L N L +L +S N + LG+L++L +K N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 139 ----TLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SLPDWID 187
++ +L ++I N L I P+ L + +S N L +P WI
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEI----PSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 188 TCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFL 245
L + S+N + +P++ + L L L+ N ++P+ + + + +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKN----------CLKMLPSLQKGFYLLNISQLRLP 295
+N I ++++N K + + N L L + NI+
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP----CNITSRVYG 621
Query: 296 G 296
G
Sbjct: 622 G 622
Score = 79.6 bits (197), Expect = 9e-16
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 29/214 (13%)
Query: 82 GELTSVNLRSNQLKGTII-----LGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSR 134
++TS++L S L L + L +L +S + I L S+ SR
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 135 NQL------KTLVLNGSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNELE-SLPD 184
N L T + + S L + +N L + L+ LD+S N + +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 185 WIDT---CPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIAS 239
C EL+ + S N+I+ + L L +S N + +P + ++
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPF-LGDCSA 224
Query: 240 LKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN 272
L++L + N ++ + + ++LK+LNIS N
Sbjct: 225 LQHLDISGNKLSGDFSR-AISTCTELKLLNISSN 257
Score = 76.9 bits (190), Expect = 8e-15
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 22/208 (10%)
Query: 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQL 137
L + L +N G I LG+ +L LD++ N + + + +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELE-SLPDWIDTCPEL 192
+ N N L+ + R + +I+ D +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 193 ETIFASHNRIT-QLPSQFFCRELGKLHTLQ---LSFNRLT-SLPSLIRQIASLKYLFLQS 247
+ S+N ++ +P E+G + L L N ++ S+P + + L L L S
Sbjct: 635 MFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 248 NSIN-ILPQLFLQNSSKLKVLNISKNCL 274
N ++ +PQ + + L +++S N L
Sbjct: 690 NKLDGRIPQ-AMSALTMLTEIDLSNNNL 716
Score = 46.1 bits (110), Expect = 2e-05
Identities = 41/248 (16%), Positives = 75/248 (30%), Gaps = 42/248 (16%)
Query: 1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPL-------NN- 50
L + N LT E P L L + N S ++P L L N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLF 550
Query: 51 --VIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNL 106
I + ++ + G + + + + +G L
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 107 TTLDVSENSI---ESLDLGALNRLESIKCSRNQLKTLVLNGSSLI-SVIAGNNKLQSLIV 162
+++ S + + S N L +G I I + L
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-----SGY--IPKEIG---SMPYL-- 658
Query: 163 SPRPARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTL 220
L++ +N++ S+PD + L + S N++ ++P L L +
Sbjct: 659 -------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEI 709
Query: 221 QLSFNRLT 228
LS N L+
Sbjct: 710 DLSNNNLS 717
Score = 45.7 bits (109), Expect = 3e-05
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN--ILPQL 256
+ + + S L L +L LS + + S + ASL L L NS++ +
Sbjct: 63 NVGFSAVSSSLL--SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
L + S LK LN+S N L + G L ++ L L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Score = 45.3 bits (108), Expect = 5e-05
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQLK 138
N+ S G N G++ LD+S N + ++G++ L + N
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-- 667
Query: 139 TLVLNGS--SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETI 195
++GS + L+ L LD+S N+L+ +P + L I
Sbjct: 668 ---ISGSIPDEVG------DLRG---------LNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 196 FASHNRIT-QLPS--QF 209
S+N ++ +P QF
Sbjct: 710 DLSNNNLSGPIPEMGQF 726
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 93.9 bits (234), Expect = 1e-21
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
SV+ S +L I + LD+ N + SL A L +L + + N+L+
Sbjct: 16 NNKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 139 TL---VLNG-SSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPE 191
TL + +L ++ +NKLQ+L V + L L + N+L+SLP + D+ +
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSI 250
L + +N + LP F +L L L+L N+L +P ++ LK L L +N +
Sbjct: 135 LTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 251 NILPQLFLQNSSKLKVLNISKN 272
+P+ + KLK+L + +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 73.9 bits (182), Expect = 8e-15
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 122 GALNRLESIKCS-RNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
AL + + CS N ++ + L ++ + I PA + LD+ N+L
Sbjct: 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSN-------I----PADTKKLDLQSNKLS 50
Query: 181 SLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIA 238
SLP +L ++ + N++ LP+ F +EL L TL ++ N+L +LP + Q+
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+L L L N + LP + +KL L++ N L+ LP
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 93.3 bits (232), Expect = 8e-21
Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 32/207 (15%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
+ S++L +N++ L NL L ++ N I +++ + + L L+ L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL-------GSLEHL 105
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD--WIDTCPELE 193
L+ N L +L L L++ N ++L + +L+
Sbjct: 106 DLS----------YNYLSNL---SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 194 TIFASHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSIN 251
+ + T++ + F L L L++ + L S ++ I ++ +L L
Sbjct: 153 ILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
Query: 252 ILPQLFLQNSSKLKVLNISKNCLKMLP 278
+L ++F+ +S ++ L + L
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFH 238
Score = 84.4 bits (209), Expect = 6e-18
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 47/235 (20%)
Query: 84 LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
L ++ L SN + TI + G+L LD+S N + +L L+ L + N
Sbjct: 78 LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 138 KTLVLNG-----SSLISVIAGNNKLQSLI---VSPRPARLQHLDISYNELESLPD-WIDT 188
KTL + L + GN + I L+ L+I ++L+S + +
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Query: 189 CPELETIFASHNRITQLPSQFF-------------------------------CRELGKL 217
+ + + L F +
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 218 HTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
++++ L + L+ QI+ L L N + +P + L+ + + N
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 69.0 bits (169), Expect = 9e-13
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
++ LD+S N + + + C L+ + + N I + F LG L L LS+
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSY 109
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSI-NILPQLFLQNSSKLKVLNISKN-CLKMLPS 279
N L++L S + ++SL +L L N + + +KL++L + +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Score = 65.1 bits (159), Expect = 2e-11
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 171 HLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230
S L S+P + ++++ S+NRIT + + + L L L+ N + ++
Sbjct: 35 ICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTI 91
Query: 231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNI 289
+ SL++L L N ++ L + + S L LN+ N K L +L +
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 290 SQLRL 294
LR+
Sbjct: 152 QILRV 156
Score = 51.3 bits (123), Expect = 4e-07
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQ 246
+C S + +PS + +L LS NR+T + S +++ +L+ L L
Sbjct: 29 SCDRNGICKGSSGSLNSIPSGLTEA----VKSLDLSNNRITYISNSDLQRCVNLQALVLT 84
Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
SN IN + + + L+ L++S N L L S
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117
Score = 38.9 bits (91), Expect = 0.003
Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 68/202 (33%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
L+E +D +DL + S + L + L S
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS------------ 223
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
+ + LR L + + +
Sbjct: 224 ------------------------VECLELRDTDLDT--------------FHFSELSTG 245
Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+ +L + + + + + SL V+ N++ L L+ S N+L
Sbjct: 246 ETNSLIKKFT-------FRNVKITDESLFQVMKLLNQISG---------LLELEFSRNQL 289
Query: 180 ESLPDWI-DTCPELETIFASHN 200
+S+PD I D L+ I+ N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 91.9 bits (229), Expect = 1e-20
Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 43/234 (18%)
Query: 84 LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLK 138
LK + L++ + L+ L+ + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS 198
L L+ L ++ N L +LP I + L +
Sbjct: 118 ELPDTMQQFAG-------------------LETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 199 H-NRITQLPSQF-------FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSI 250
+T+LP + L L +L+L + + SLP+ I + +LK L ++++ +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 251 NILPQLFLQNSSKLKVLNISK-NCLKMLP-------SLQKGFYLLNISQLR-LP 295
+ L + + KL+ L++ L+ P L++ L + S L LP
Sbjct: 219 SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLP 270
Score = 91.2 bits (227), Expect = 3e-20
Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 35/222 (15%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSR-NQLK 138
L + + + L + + + L TL ++ N + +L + +LNRL + +L
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 139 TL------------VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE 180
L +L S+ ++SL PA L+ L I + L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-----PASIANLQNLKSLKIRNSPLS 219
Query: 181 SLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLS-FNRLTSLPSLIRQIA 238
+L I P+LE + + P F L L L + L +LP I ++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLT 277
Query: 239 SLKYLFLQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPS 279
L+ L L+ ++ LP L + ++ + + L
Sbjct: 278 QLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQ 318
Score = 85.4 bits (212), Expect = 2e-18
Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 27/190 (14%)
Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVL-------------NGSSLISVIAGNNKLQSLI 161
E+L L +Q + N ++ L++
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 162 VSPRPAR---LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLH 218
A L++ L PD L+ + + +LP L
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ--FAGLE 130
Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQS-NSINILPQLFLQNS--------SKLKVLNI 269
TL L+ N L +LP+ I + L+ L +++ + LP+ L+ L +
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 270 SKNCLKMLPS 279
++ LP+
Sbjct: 191 EWTGIRSLPA 200
Score = 83.8 bits (208), Expect = 8e-18
Identities = 51/271 (18%), Positives = 82/271 (30%), Gaps = 74/271 (27%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
LQ +D L E P F L+ L+ A+N + LP + LN
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS----LNR---------- 151
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSN-----------QLKGTIILGNYGNLTTL 109
L +++R+ + NL +L
Sbjct: 152 -----------------------LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 110 DVSENSIESL--DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
+ I SL + L L+S+K + L L L
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK------------------ 230
Query: 168 RLQHLDISY-NELESLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFN 225
L+ LD+ L + P L+ + + + LP L +L L L
Sbjct: 231 -LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGC 287
Query: 226 -RLTSLPSLIRQIASLKYLFLQSNSINILPQ 255
L+ LPSLI Q+ + + + + L Q
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 34.5 bits (80), Expect = 0.087
Identities = 33/236 (13%), Positives = 57/236 (24%), Gaps = 96/236 (40%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
LQ R++ + P + + LK L + +S L + H L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH----LPK---------- 230
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES 118
L ++LR I G L L + +
Sbjct: 231 -----------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDC---- 263
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ L ++ ++L +L+ LD+
Sbjct: 264 ------SNLLTLPLDIHRLT-----------------------------QLEKLDLRGCV 288
Query: 179 -LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
L LP I P I + QL +R + P+
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQ-----------------HRPVARPAE 327
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 88.9 bits (221), Expect = 5e-20
Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 12/193 (6%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
NL + + + + ++I+SL + L+ + S NQ+ L
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79
Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
+ + + L + N+L++L P L L + NEL + LE + +
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
N++ + L KL L L N +T+ L ++ + ++ L P +
Sbjct: 138 NKLKSIVM---LGFLSKLEVLDLHGNEITNTGGL-TRLKKVNWIDLTGQKCVNEPVKYQP 193
Query: 260 NSSKLKVLNISKN 272
L + N K+
Sbjct: 194 E---LYITNTVKD 203
Score = 83.2 bits (206), Expect = 4e-18
Identities = 36/204 (17%), Positives = 77/204 (37%), Gaps = 12/204 (5%)
Query: 89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGS 145
R + N ++ + S+ L L+ +++ + +++L + +
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63
Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
+L + +N++ L +L+ L ++ N L++L L +F +N +
Sbjct: 64 NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDT 121
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
S L L L + N+L S+ L ++ L+ L L N I L K+
Sbjct: 122 DS---LIHLKNLEILSIRNNKLKSIVML-GFLSKLEVLDLHGNEITNTG--GLTRLKKVN 175
Query: 266 VLNISKNCLKMLP-SLQKGFYLLN 288
++++ P Q Y+ N
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITN 199
Score = 74.3 bits (183), Expect = 5e-15
Identities = 36/285 (12%), Positives = 81/285 (28%), Gaps = 64/285 (22%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ + + +T+ +Q ++ + + I L M N
Sbjct: 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-----GMQFFTN---------- 64
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
L ++L NQ+ L + L L V+ N +++L+
Sbjct: 65 -----------------------LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN 101
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
L + N+L+ + L+ L I N+L+
Sbjct: 102 GIPSACLSRLFLDNNELRD--------TDSLIHLKNLEI------------LSIRNNKLK 141
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
S+ + +LE + N IT L K++ + L+ + + P + +
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
++ + ++ N + + F
Sbjct: 198 TNT-VKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFS 241
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 87.6 bits (217), Expect = 6e-19
Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 83 ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSI-ESLDLGALNRLESIKCSRNQLK 138
+ +L+ I +G+L +++S+N + E ++ + L +L
Sbjct: 31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-------PKLH 82
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFA 197
+ + ++ + I Q+L LQ+L IS ++ LPD + +
Sbjct: 83 EIRIEKANNLLYIN-PEAFQNL------PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135
Query: 198 SHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQ 255
N I + F + L L+ N + + + + +N++ LP
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195
Query: 256 LFLQNSSKLKVLNISKNCLKMLPS 279
+S +L+IS+ + LPS
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPS 219
Score = 66.4 bits (162), Expect = 5e-12
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQ-LPSQFFCRELGKLHTLQLS 223
P L +L + +LE I S N + + + + F L KLH +++
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIE 87
Query: 224 -FNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
N L + + + +L+YL + + I LP + +S + +L+I N
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Score = 64.8 bits (158), Expect = 1e-11
Identities = 31/196 (15%), Positives = 70/196 (35%), Gaps = 27/196 (13%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
+ E+ + + ++ +L+ +
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVI------------QKGAFSGF---- 53
Query: 165 RPARLQHLDISYNE-LESLPDWI-DTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQ 221
L+ ++IS N+ LE + + P+L I N + + + F + L L L
Sbjct: 54 --GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLL 110
Query: 222 LSFNRLTSLPSLI-RQIASLKYLFLQSN-SINILPQ-LFLQNSSKLKVLNISKNCLKMLP 278
+S + LP + L +Q N +I+ + + F+ S + +L ++KN ++ +
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170
Query: 279 SLQKGFYLLNISQLRL 294
+ F + +L L
Sbjct: 171 N--SAFNGTQLDELNL 184
Score = 49.1 bits (117), Expect = 2e-06
Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 77/269 (28%)
Query: 9 NDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
N+L + P L++L + I HLP +
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--------------------- 128
Query: 68 EDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRL 127
+ ++++ N +I +++ + L
Sbjct: 129 ---------------QKVLLDIQDN---------------------INIHTIERNSFVGL 152
Query: 128 ESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWI 186
+ L LN + + + L + N LE LP D
Sbjct: 153 ------SFESVILWLNKNGIQEIHNSAFNGTQL--------DELNLSDNNNLEELPNDVF 198
Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQ 246
+ S RI LPS L KL L LP+L ++ +L L
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGL-ENLKKLRARST--YNLKKLPTL-EKLVALMEASLT 254
Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLK 275
S + + S+L + +
Sbjct: 255 YPSHCCAFANWRRQISELHPICNKSILRQ 283
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 86.1 bits (213), Expect = 6e-18
Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 24/208 (11%)
Query: 83 ELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIK---CSRNQL 137
L+ + S+ + I + N+ + + + + + +++ S N L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 138 KTLVLNG----SSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI 186
V + L ++I N+L+ L + A LQ LDIS N +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKEL---SKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 187 --DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
L ++ S N +T + ++ L L N++ S+P + ++ +L+ L
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQELN 450
Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKN 272
+ SN + +P + L+ + + N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 79.1 bits (195), Expect = 1e-15
Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 20/286 (6%)
Query: 3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISH--LPVFLRHPMSPLNNVIEHGIAEER 60
+ + + + + S ++ L + + N+ I
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
E++ I+ + + LT N+ + IL + T V SI ++
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT---VWYFSISNVK 258
Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNE 178
L S LK L ++ ++ + + + + + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVV-------SDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 179 LESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR-- 235
+ + S+N +T + L +L TL L N+L L +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMT 370
Query: 236 -QIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPS 279
Q+ SL+ L + NS++ + + L LN+S N L
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Score = 72.2 bits (177), Expect = 1e-13
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 166 PARLQHLDISYNELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
+ L+IS N + L I + +L + SHNRI L F +L L LS
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH 78
Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLK-----MLP 278
N+L + +LK+L L N+ + LP N S+LK L +S L+ +
Sbjct: 79 NKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 279 SLQKGFYLLNISQLRLP 295
L LL + +
Sbjct: 137 HLNISKVLLVLGETYGE 153
Score = 66.4 bits (162), Expect = 1e-11
Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 30/237 (12%)
Query: 83 ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
+ T +N+ N + T + + L L +S N I+ LD+ +L+ L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-------QELEYL 74
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW--IDTCPELETIFAS 198
L+ +NKL + L+HLD+S+N ++LP +L+ + S
Sbjct: 75 DLS----------HNKLVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL-- 256
+ + L+ ++ + L+ +S I
Sbjct: 124 TTHLEKSSVLPIA----HLNISKVLLVLGETYGEKE-DPEGLQDFNTESLHIVFPTNKEF 178
Query: 257 -FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDN 312
F+ + S V N+ + +K + K Y L+I S+ + ++ N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Score = 58.7 bits (142), Expect = 2e-09
Identities = 44/325 (13%), Positives = 97/325 (29%), Gaps = 73/325 (22%)
Query: 1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
+ +N ++E + S +L+ L + NRI +L VF +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ------------- 69
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
EL ++L N+L I NL LD+S N+ +
Sbjct: 70 -------------------------ELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFD 103
Query: 118 SLDLGA----LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHL 172
+L + +++L+ + S L+ + + L ++ P LQ
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163
Query: 173 DISYNELESLPD----WIDTCPELETIFASHNRITQLPSQFFCRELGK------------ 216
+ + + +I + I + C
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 217 ---LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS-----KLKVLN 268
L+ ++ ++N + L+ ++ Y + + + + S L +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 269 ISKNCLKMLPS-LQKGFYLLNISQL 292
+ + S + + F +NI
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNF 307
Score = 58.0 bits (140), Expect = 5e-09
Identities = 43/314 (13%), Positives = 102/314 (32%), Gaps = 23/314 (7%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPV-----------FLRHPMSPLN 49
L+ + N L + LK L + N LP+ FL + L
Sbjct: 71 LEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 50 NVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLT 107
IA E+ +PE + + +L + + T
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 108 TLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
++ ++I+ + ++ Q + N +L ++ N ++
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN-LTLNNIETTWNSFIRILQLVWHT 247
Query: 168 RLQHLDISYNELESLPDWID---TCPELETIFASH--NRITQLPSQFFCRELGKLHTLQL 222
+ + IS +L+ D+ D + L+ + + + P + ++
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 223 SFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
+ + + L +I+ +L +N + + ++L+ L + N LK L +
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Query: 282 KGF-YLLNISQLRL 294
+ + ++ QL +
Sbjct: 368 EMTTQMKSLQQLDI 381
Score = 53.3 bits (128), Expect = 1e-07
Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 22/239 (9%)
Query: 83 ELTSVNLRSNQLKGTIILGNY---GNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+L + + N+++ + + + L LD+S N + + L+ + S N
Sbjct: 46 KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDA 104
Query: 140 LVLNG-----SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPE--L 192
L + S L + L+ V P + HL+IS L + + L
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLP----IAHLNISKVLLVLGETYGEKEDPEGL 160
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
+ I ++ F + + ++ L+++ ++ +L + +
Sbjct: 161 QDFNTESLHIVFPTNKEF-HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 253 LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPGFCNSDALIGIFDS 309
L L + + N + L + +IS ++L G + S
Sbjct: 220 PKLSNLT----LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274
Score = 48.7 bits (116), Expect = 3e-06
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQL 256
S N + +P K L +S N ++ L S I ++ L+ L + N I L
Sbjct: 8 SKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 257 FLQNSSKLKVLNISKNCLKMLPS 279
+ + +L+ L++S N L +
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISC 86
Score = 42.2 bits (99), Expect = 4e-04
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
+ S N L +P + L + N I+ L + + SKL++L IS N ++ L
Sbjct: 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 279 S 279
Sbjct: 62 I 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 84.8 bits (209), Expect = 2e-17
Identities = 50/294 (17%), Positives = 108/294 (36%), Gaps = 19/294 (6%)
Query: 14 FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV 73
++ +NR SH+ + S + + +H Q E ++
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335
Query: 74 ERREPEVKGELTSVNLRSNQL------KGTIILGNYGNLTTLDVSENSIESLDLGALNRL 127
+R E + T L +L L + L L+ + + L
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 395
Query: 128 ESIKCSR------NQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES 181
+ + + + LK + ++ + + L++ ++ A ++ L +++ +L
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455
Query: 182 LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLK 241
L ++ + + SHNR+ LP L L LQ S N L ++ + + L+
Sbjct: 456 LCH-LEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDGV-ANLPRLQ 511
Query: 242 YLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKMLPSLQK--GFYLLNISQL 292
L L +N + + L + +L +LN+ N L +Q+ L ++S +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 75.2 bits (184), Expect = 2e-14
Identities = 43/298 (14%), Positives = 90/298 (30%), Gaps = 13/298 (4%)
Query: 5 RVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDF 64
R + F R+ L + + + + +
Sbjct: 252 REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLND 311
Query: 65 EQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD--LG 122
+ + V + + E + R L ++S L L
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECW--CRDSATDEQLFRCELSVEKSTVLQSELE 369
Query: 123 ALNRLESIK-CSRNQLKTLVL---NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ L+ ++ ++ L T++L L+ +L D+
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
L ++ + +H +T L +L + L LS NRL +LP + +
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALR 486
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
L+ L N++ + + N +L+ L + N L+ ++Q + L L G
Sbjct: 487 CLEVLQASDNALENVDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542
Score = 36.7 bits (84), Expect = 0.023
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 41/123 (33%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ + N L P + L+ L A+ N + ++ ++ L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-----GVANLPR---------- 509
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIE 117
L + L +N+L+ L + L L++ NS+
Sbjct: 510 -----------------------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 118 SLD 120
+
Sbjct: 547 QEE 549
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.5 bits (208), Expect = 3e-17
Identities = 73/440 (16%), Positives = 128/440 (29%), Gaps = 140/440 (31%)
Query: 6 VDR--NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHG-------- 55
DR ND F + + RL+ + + L P NV+ G
Sbjct: 116 RDRLYNDNQVFA--KYNVSRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGKTW 165
Query: 56 IAEE--REEDFEQD-EDGI----IVERREPE------------VKGELT-----SVNLRS 91
+A + + + I + PE + T S N++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 92 N------QLKGTIILGNYGN-LTTLD-V-SENSIESLDLGALNRLESIKCSRNQLKTLVL 142
+L+ + Y N L L V + + + +L C K L+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---------C-----KILLT 271
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS--HN 200
+ V + L + + L H ++ E++++
Sbjct: 272 --TRFKQVT---DFLSAATTTHIS--LDHHSMTLTP-----------DEVKSLLLKYLDC 313
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
R LP RE+ + P + IA + + N
Sbjct: 314 RPQDLP-----REVLTTN------------PRRLSIIAESI-----RDGLATWDNWKHVN 351
Query: 261 SSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLRLPGFCNSDALI-----GIF----DS 309
KL I ++ L +L +K F L++ F A I +
Sbjct: 352 CDKLT--TIIESSLNVLEPAEYRKMFDRLSV-------F-PPSAHIPTILLSLIWFDVIK 401
Query: 310 GDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHR-----YSLSAT 364
D + + L + L+E++ + T S Y L E + +LHR Y++ T
Sbjct: 402 SDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 365 LCHLSLHPVTHR-YML-HIA 382
L P Y HI
Sbjct: 459 FDSDDLIPPYLDQYFYSHIG 478
Score = 44.1 bits (103), Expect = 1e-04
Identities = 62/478 (12%), Positives = 142/478 (29%), Gaps = 131/478 (27%)
Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQL----------PSQFFCRELGKLHTLQL 222
+ +++ +P I + E++ I S + ++ + + + ++ L++
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRI 89
Query: 223 SFNRLTSL-------PSLIRQ--IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
++ L S PS++ + I L+ N + + + L +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKL---RQA 143
Query: 274 LKMLPSLQKGFYLLNISQLR-LPGF---------CNSDALIGIFDSG------DNGDIAS 317
L L+ +L + + G C S + D N +
Sbjct: 144 LL---ELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 318 TLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSL------- 370
T+++ + ++L + + SD+ L H I+ L R S + L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYEN-CLLVLLNVQ 254
Query: 371 HP-------------VTHRYMLHIASVGEAKAI-LCRQAGSLTFTHAPTLS--------- 407
+ +T R+ + A + S+T T S
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 408 ----PPVPPQGSCPLSFPDPHVTEV--MLHEN----DHFLILANKSVSEPV---LAAKRI 454
P + P ++ + + + D++ + ++ + L
Sbjct: 315 PQDLPREVLTTN-PR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 455 QDLAQSYGSEDNLSVL------------VLRFQGSEFDSRTRDAKLSSMRKLGVQDPECP 502
+ + + D LSV ++ F + D KL L + P
Sbjct: 369 AEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQP-KE 423
Query: 503 WTIE-YDRS-SPSGQSDQASSGHTAVMTDTIYNKMDKYNFGDRR---------SSLGY 549
TI + + + H +++ YN ++ D S +G+
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGH 479
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 80.0 bits (198), Expect = 3e-17
Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 34/216 (15%)
Query: 78 PEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCS 133
P + ++ L L+ TI N N++ + VS + +++ L+ + L
Sbjct: 27 PSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK---- 81
Query: 134 RNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD--WI 186
+ + + L + A L+ L I L+ PD +
Sbjct: 82 ---VTHIEI---------RNTRNLTYI---DPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 187 DTCPELETIFASHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
+ + + N +T +P F + TL+L N TS+ L ++L
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186
Query: 246 QSNSI--NILPQLFLQNSSKLKVLNISKNCLKMLPS 279
N I F S +L++S+ + LPS
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222
Score = 72.0 bits (177), Expect = 2e-14
Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 30/199 (15%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN--NKLQSLIV 162
+ TL + E + ++ A + L + + ++ + + + L +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNL-------PNISRIYVSIDVTLQQLESHSFYNLSKV-- 82
Query: 163 SPRPARLQHLDISYN-ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
H++I L + D + P L+ + + + P L
Sbjct: 83 -------THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135
Query: 221 QLSFN-RLTSLP--SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC-LKM 276
+++ N +TS+P + L L +N + N +KL + ++KN L +
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTV 194
Query: 277 LPS-----LQKGFYLLNIS 290
+ + G LL++S
Sbjct: 195 IDKDAFGGVYSGPSLLDVS 213
Score = 59.2 bits (144), Expect = 5e-10
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN-RL 227
+ ++ +++ +P P +T+ + +PS F L + + +S + L
Sbjct: 13 EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTL 68
Query: 228 TSLPSLI-RQIASLKYLFLQSN-SINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
L S ++ + ++ +++ ++ + L+ LK L I LKM P L K +
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 286 LLNISQLRL 294
L +
Sbjct: 129 TDIFFILEI 137
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 80.3 bits (199), Expect = 1e-16
Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 31/198 (15%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQLK 138
L + + + G I L L TLD S N++ + +L L I N++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI- 161
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETIFA 197
+G+ I G+ L + IS N L +P L +
Sbjct: 162 ----SGA--IPDSYGS--FSKL--------FTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 198 SHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-ILP 254
S N + F + L+ N L L + +L L L++N I LP
Sbjct: 205 SRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLP 261
Query: 255 QLFLQNSSKLKVLNISKN 272
Q L L LN+S N
Sbjct: 262 Q-GLTQLKFLHSLNVSFN 278
Score = 78.7 bits (195), Expect = 3e-16
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 46/221 (20%)
Query: 82 GELTSVNLRSNQLKGTII----LGNYGNLTTLDVS-ENSIE---SLDLGALNRLESIKCS 133
+ +++L L L N L L + N++ + L +L + +
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 134 RNQLKTLVLNG---------SSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNE 178
++G +L+++ N L + P L + N
Sbjct: 110 HTN-----VSGAIPDFLSQIKTLVTLDFSYNALSGTL----PPSISSLPNLVGITFDGNR 160
Query: 179 LE-SLPDWIDTCPELETIFA-SHNRIT-QLPSQFFCRELGKLH--TLQLSFNRLT-SLPS 232
+ ++PD + +L T S NR+T ++P L+ + LS N L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-----TFANLNLAFVDLSRNMLEGDASV 215
Query: 233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN 272
L + + + L NS+ L ++ S L L++ N
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNN 254
Score = 67.6 bits (166), Expect = 1e-12
Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 59/230 (25%)
Query: 100 LGNYGNLTTLDVSENSI----------------ESLDLGALNRL-----ESI-KCSRNQL 137
+ LD+S ++ L +G +N L +I K ++ L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ--L 103
Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SLPDWIDTCP 190
L + + + I P L LD SYN L +LP I + P
Sbjct: 104 HYLYIT----------HTNVSGAI----PDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 191 ELETIFASHNRIT-QLPSQFFCRELGKLHT-LQLSFNRLT-SLPSLIRQIASLKYLFLQS 247
L I NRI+ +P + KL T + +S NRLT +P + +L ++ L
Sbjct: 150 NLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 248 NSI--NILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRL 294
N + + + + ++++KN L L + N++ L L
Sbjct: 207 NMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGL---SKNLNGLDL 251
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQLK 138
TS+ + N+L G I N NL +D+S N +E S+ G+ + I ++N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 139 -TL--VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE 180
L V +L + NN++ + P L L++S+N L
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTL----PQGLTQLKFLHSLNVSFNNLC 281
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 79.9 bits (197), Expect = 1e-16
Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 29/216 (13%)
Query: 84 LTSVNLRSNQLKGT----IILGNYGNLTTLDVSENSIESLDLG-------ALNRLESIKC 132
L + L + ++ GT ++ +L L++ S + D L+ +
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 133 SRNQLKTLVLNGSSLISV----------IAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
++ + G L S + + LQ L + +E+
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 183 PDWIDTC----PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+L+ + SHN + C +L++L LSF L +P +
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA-- 274
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
L L L N ++ P ++ L++ N
Sbjct: 275 KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPF 308
Score = 73.8 bits (181), Expect = 1e-14
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 24/164 (14%)
Query: 84 LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSI-------ESLDLGALNRLESIKCSR 134
L +++ + + L+TLD+S+N +L L+ +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210
Query: 135 NQLKTL-------VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPD 184
++T L + +N L+ +P P++L L++S+ L+ +P
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
+ +L + S+NR+ + P EL ++ L L N
Sbjct: 271 GLP--AKLSVLDLSYNRLDRNP---SPDELPQVGNLSLKGNPFL 309
Score = 71.5 bits (175), Expect = 8e-14
Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 37/241 (15%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
L + +R+ ++ I+ G L + E ++E+L++ ++ + L L L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRI 202
S + A +LQ + L+ L I+ + + + P L T+ S N
Sbjct: 130 NVSWATRDAWLAELQQWL----KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 203 T---QLPSQFFCRELGKLHTLQLSFNRLTSL----PSLIRQIASLKYLFLQSNSI----- 250
L S + L L L + + +L L+ L L NS+
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 251 -----------------NILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
L Q+ +KL VL++S N L PS + L + L
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDE---LPQVGNLS 302
Query: 294 L 294
L
Sbjct: 303 L 303
Score = 66.1 bits (161), Expect = 5e-12
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 25/224 (11%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
L V+ ++ + T I+ + +L L V I S L R+ I + L+ L L
Sbjct: 49 LKRVDTEADLGQFTDIIKS-LSLKRLTVRAARIPSRILFGALRVLGI----SGLQELTLE 103
Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTC-----PELETIFAS 198
+ ++ L L++ + W+ P L+ + +
Sbjct: 104 NLEV------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-----RQIASLKYLFLQSNSINIL 253
+ R L TL LS N LI + +L+ L L++ +
Sbjct: 158 QAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 254 PQLF---LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
+ +L+ L++S N L+ + ++ L L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Score = 43.7 bits (103), Expect = 9e-05
Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 13/175 (7%)
Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNEL--ESLPDWI 186
C L G SL ++ + L + L+ L + + L +
Sbjct: 30 CLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89
Query: 187 D--TCPELETIFASHNRITQL-PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI-----A 238
L+ + + +T P L+ L L + + + ++
Sbjct: 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
LK L + ++ L L++S N L L L+
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 81.8 bits (202), Expect = 1e-16
Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 10/179 (5%)
Query: 104 GNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNK 156
+ +S + + + + + ++N V G L ++I N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 157 LQSL-IVSPRPARLQHLDISYNELESLPDWI--DTCPELETIFASHNRITQLPSQFFCRE 213
L++ V+ + L+ L SL TC E+I + L F
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448
Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
K+ L L NR+ S+P + + +L+ L + SN + +P + L+ + + N
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 76.1 bits (187), Expect = 9e-15
Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 26/301 (8%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKF--LSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
L +D G +S L + S V + ++ L ++ I
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
E + R + L + + L++ +I
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIA------------GNNKLQSL--IVSP 164
++ + + + + P
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350
Query: 165 RPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
P+ L+ + N T L+T+ N + + +L+
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM--TKNMSSLETL 408
Query: 224 FNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L SL S S+ L L SN + +F K+KVL++ N + +P
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGSVFRCLPPKVKVLDLHNNRIMSIP 466
Query: 279 S 279
Sbjct: 467 K 467
Score = 67.2 bits (164), Expect = 6e-12
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 33/243 (13%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
+ V+ + L + L +S+NSI L + ++ L ++L+ L L+
Sbjct: 34 SMVDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFL-------SELRVLRLSH 85
Query: 145 SSLISVIAG--------------NNKLQSLIVSPRP-ARLQHLDISYNELESLPDW--ID 187
+ + S+ +N+LQ++ S P A L+HLD+S+N+ + LP
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLPVCKEFG 143
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
+L + S + QL L L + + QI + L L
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLP------SLQKGFYLLNISQLRLPGFCNSD 301
+ ++ + + L L +S L L + + + L +
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 302 ALI 304
Sbjct: 264 KCS 266
Score = 61.4 bits (149), Expect = 4e-10
Identities = 40/256 (15%), Positives = 86/256 (33%), Gaps = 33/256 (12%)
Query: 84 LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIESLDLGALNRLE---------SIK 131
L ++L N GN LT L +S LDL + L S
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182
Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE--------SLP 183
+ ++L + ++++ ++ N L S+ V+ L HL +S +L +
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242
Query: 184 DWIDTCPELETIFASH-----NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
+ P L + H +L F+ R + L+ L+
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Query: 239 SLKYLFLQSNSINILPQLFLQNS-----SKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
+LK L ++ + LF + + +++ + +S + + + + + L
Sbjct: 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP-SPSSFTFLN 359
Query: 294 LPGFCNSDALIGIFDS 309
+D++ +
Sbjct: 360 FTQNVFTDSVFQGCST 375
Score = 56.8 bits (137), Expect = 1e-08
Identities = 32/282 (11%), Positives = 70/282 (24%), Gaps = 37/282 (13%)
Query: 1 LQEFRVDRNDLTEFPGNQ--DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
L+ + ND P + + +L FL + + L + P+ ++ I
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL------LPVAHLHLSCILL 176
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
+ + + + + N L + + L L +S +
Sbjct: 177 DLVSYHIKGGE----TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ L S L + L L P +++L+I
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTW-----KCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQI 237
+ D + + L L + +
Sbjct: 288 ITERIDREE-------------------FTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
A + L + + + + S LN ++N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
Score = 52.2 bits (125), Expect = 3e-07
Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 42/235 (17%)
Query: 83 ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
EL + L N+++ ++ +L LDVS N ++++ + L + S N
Sbjct: 77 ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDV 135
Query: 140 LVLNG--SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFA 197
L + +L L L +S + L L I
Sbjct: 136 LPVCKEFGNLTK-------------------LTFLGLSAAKFRQLDLLPVAHLHLSCIL- 175
Query: 198 SHNRITQLPS-QFFCRELGKLHTLQLSFNRLTSLPSLIRQ-IASLKYLFLQSNSINILPQ 255
+ + ++ L L F+ + + + +L +L L + +N
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235
Query: 256 LFLQNSSK------------LKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPG 296
L L+ + + C L + LNI L +
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Score = 45.2 bits (107), Expect = 4e-05
Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 51/202 (25%)
Query: 1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
+N T+ + RL+ L +N + + + +
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS---------L 405
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
D + R + +NL SN L G++ + LD+ N I S+
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465
Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
LQ+ LQ L+++ N+L
Sbjct: 466 PKDVT-------------------------------HLQA---------LQELNVASNQL 485
Query: 180 ESLPD-WIDTCPELETIFASHN 200
+S+PD D L+ I+ N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 79.1 bits (195), Expect = 4e-16
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 39/242 (16%)
Query: 83 ELTSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
++L N L+ NL +L +S N + + A + L+
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-------NLRY 92
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
L L+ +N L +L L+ L + N + + + +L+
Sbjct: 93 LDLS----------SNHLHTL---DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 194 TIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRLTSLP-SLIRQIASLK--YLFLQSN 248
++ S N+I++ P + +L KL L LS N+L LP + ++++ + L+L +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Query: 249 SINILPQLF-----LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDAL 303
+ +L+ Q V++ ++ M + L+ +A
Sbjct: 200 PLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAH 259
Query: 304 IG 305
+G
Sbjct: 260 LG 261
Score = 75.7 bits (186), Expect = 6e-15
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
L S +L ++P + + SHN +++L +++ L LH+L LS N L
Sbjct: 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78
Query: 230 LPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ S + +L+YL L SN ++ L + + L+VL + N + ++
Sbjct: 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Score = 74.5 bits (183), Expect = 1e-14
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 166 PARLQHLDISYNELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
P+ LD+S+N L L L ++ SHN + + S+ F + L L LS
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS 96
Query: 224 FNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS--L 280
N L +L + + +L+ L L +N I ++ + ++ ++L+ L +S+N + P +
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 281 QKGFYLLNISQLRL 294
+ G L + L L
Sbjct: 157 KDGNKLPKLMLLDL 170
Score = 33.7 bits (77), Expect = 0.17
Identities = 23/145 (15%), Positives = 36/145 (24%), Gaps = 46/145 (31%)
Query: 1 LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
L+ + N L L+ L N I + F +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQ------- 137
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK----GTII-LGNYGNLTTLDVS 112
L + L NQ+ I L LD+S
Sbjct: 138 --------------------------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171
Query: 113 ENSIESLDLGALNRLESIKCSRNQL 137
N ++ L L L +L + + L
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYL 196
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 77.7 bits (192), Expect = 4e-16
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 108 TLDVSENSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPR 165
T+ VS + A + + +S+ +IA N+ ++S+
Sbjct: 2 TITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 61
Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
+++L + N+L + L + + N++ LP+ F +L L L L N
Sbjct: 62 LPNVRYLALGGNKLHDISAL-KELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVEN 119
Query: 226 RLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+L SLP + ++ +L YL L N + LP+ + L L++S N L+ LP
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Score = 77.0 bits (190), Expect = 7e-16
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-VL 142
NL+ + + ++ + + + I+S+ + L + + N+L + L
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 143 NG-SSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFAS 198
++L +I N+LQSL V + L+ L + N+L+SLPD + D L + +
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN 248
HN++ LP F + L L L LS+N+L SLP + ++ LK L L N
Sbjct: 142 HNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Score = 72.0 bits (177), Expect = 3e-14
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKT 139
+ + ++ +K + N+ L + N + + A L L + + NQL++
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS 99
Query: 140 L---VLNG-SSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPDWI-DTCPEL 192
L V + ++L ++ N+LQSL V + L +L++++N+L+SLP + D L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLFLQS 247
+ S+N++ LP F + L +L L+L N+L S+P L SL+Y++L
Sbjct: 160 TELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRL----TSLQYIWLHD 214
Query: 248 N 248
N
Sbjct: 215 N 215
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 72.8 bits (179), Expect = 9e-15
Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
+T + + +N+I+ + GA + +L+ + L+ NN++ L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPY-------KKLRRIDLS----------NNQISEL---- 71
Query: 165 RPA-------RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGK 216
L L + N++ LP + + L+ + + N+I L F ++L
Sbjct: 72 -APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHN 129
Query: 217 LHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
L+ L L N+L ++ + +++ + L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 70.4 bits (173), Expect = 6e-14
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P + + + N ++ +P +L I S+N+I++L F + L L++L L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYG 89
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
N++T LP L + SL+ L L +N IN L Q+ L +L++ N L+ + +
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGT 147
Query: 284 F-YLLNISQLRL 294
F L I + L
Sbjct: 148 FSPLRAIQTMHL 159
Score = 70.1 bits (172), Expect = 7e-14
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 154 NNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
N ++ + P A +L+ +D+S N++ L L ++ N+IT+LP
Sbjct: 41 QNTIKVI---PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97
Query: 208 QFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
F L L L L+ N++ L + + +L L L N + + + ++
Sbjct: 98 SLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156
Query: 267 LNISKN 272
+++++N
Sbjct: 157 MHLAQN 162
Score = 68.1 bits (167), Expect = 4e-13
Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 33/151 (21%)
Query: 85 TSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
T + L N +K Y L +D+S N I L A L L +LVL
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-------SLNSLVL 87
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELET 194
NK+ L P LQ L ++ N++ L L
Sbjct: 88 Y----------GNKITEL-----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
+ N++ + F L + T+ L+ N
Sbjct: 133 LSLYDNKLQTIAKGTFSP-LRAIQTMHLAQN 162
Score = 53.1 bits (128), Expect = 4e-08
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 30/127 (23%)
Query: 83 ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+L ++L +NQ+ + +L +L + N I L L L+
Sbjct: 57 KLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-------SLQL 108
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
L+LN NK+ L A L L + N+L+++ ++
Sbjct: 109 LLLN----------ANKINCL---RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 194 TIFASHN 200
T+ + N
Sbjct: 156 TMHLAQN 162
Score = 40.4 bits (95), Expect = 7e-04
Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 74/205 (36%)
Query: 2 QEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIAE 58
E R+++N + P + +L+ + + N+IS L F L +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRS-------- 81
Query: 59 EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI 116
L S+ L N++ + +L L ++ N I
Sbjct: 82 -------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQH 171
L + A L + L L L +NKLQ++ + +Q
Sbjct: 117 NCLRVDAFQDLHN-------LNLLSLY----------DNKLQTI---AKGTFSPLRAIQT 156
Query: 172 LDISYN------ELESLPDWIDTCP 190
+ ++ N L+ L D++ T P
Sbjct: 157 MHLAQNPFICDCHLKWLADYLHTNP 181
Score = 37.7 bits (88), Expect = 0.005
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 223 SFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
LT +P+ + ++ + L+ N+I ++P KL+ +++S N + L
Sbjct: 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 71.9 bits (177), Expect = 1e-14
Identities = 26/192 (13%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
+ L + I +LT + ++ ++ L + + ++ + +
Sbjct: 24 AYLNGLLGQSST-ANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-- 80
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHN 200
+ I+G + L+ L I ++ S + L + SH+
Sbjct: 81 ------YNPISGLSNLE------------RLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
L K++++ LS+N + ++ + LK L +Q + ++ +++
Sbjct: 123 AHDDSILTKI-NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIED 179
Query: 261 SSKLKVLNISKN 272
KL L
Sbjct: 180 FPKLNQLYAFSQ 191
Score = 70.8 bits (174), Expect = 3e-14
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 25/171 (14%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL 142
LT + L + + + N+ L ++ + + + L+ LE ++ +
Sbjct: 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT---- 101
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETIFASHN- 200
S I ++G L LDIS++ + S+ I+T P++ +I S+N
Sbjct: 102 --SDKIPNLSGLTSLTL------------LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
IT + + L +L +L + F+ + + L L+ S +I
Sbjct: 148 AITDIMP---LKTLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQTIG 194
Score = 63.1 bits (154), Expect = 1e-11
Identities = 24/153 (15%), Positives = 59/153 (38%), Gaps = 17/153 (11%)
Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
+ ++ + G + ++ + + L ++ ++ + L I+ ++ + ++ T
Sbjct: 24 AYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY 81
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264
L L L++ +TS + + SL L + ++ + + K+
Sbjct: 82 N---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138
Query: 265 KVLNISKNC-------LKMLPSLQKGFYLLNIS 290
+++S N LK LP L+ LNI
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKS----LNIQ 167
Score = 30.7 bits (70), Expect = 0.76
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
L S+N++ + + + ++ L L +I
Sbjct: 161 LKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 67.8 bits (166), Expect = 5e-13
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
P L ++ NE L P+L I S+N+IT + F ++ + L+
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLT 89
Query: 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
NRL ++ + + + SLK L L+SN I + S +++L++ N + +
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Score = 65.4 bits (160), Expect = 3e-12
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 154 NNKLQSLIVS---PRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQF 209
NN+ L + + +L+ ++ S N++ + + + + I + NR+ + +
Sbjct: 41 NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100
Query: 210 FCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLN 268
F + L L TL L NR+T + + ++S++ L L N I + L LN
Sbjct: 101 F-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159
Query: 269 ISKN 272
+ N
Sbjct: 160 LLAN 163
Score = 65.1 bits (159), Expect = 4e-12
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 34/152 (22%)
Query: 85 TSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
+ L +N+ L+ T I L ++ S N I ++ GA + ++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-------GVNEIL 87
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELE 193
L +N+L+++ + L+ L + N + + + +
Sbjct: 88 LT----------SNRLENV-----QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
+ N+IT + F L L TL L N
Sbjct: 133 LLSLYDNQITTVAPGAFDT-LHSLSTLNLLAN 163
Score = 60.4 bits (147), Expect = 1e-10
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 175 SYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234
S +L +P+ I + ++N T L + ++L +L + S N++T +
Sbjct: 19 SNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 235 -RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ + + L SN + + + LK L + N + + +
Sbjct: 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Score = 50.0 bits (120), Expect = 4e-07
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 30/127 (23%)
Query: 83 ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
+L +N +N++ I G + + ++ N +E++ LE LKT
Sbjct: 58 QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-------SLKT 109
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
L+L +N++ + + ++ L + N++ ++ DT L
Sbjct: 110 LMLR----------SNRITCV---GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156
Query: 194 TIFASHN 200
T+ N
Sbjct: 157 TLNLLAN 163
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 67.4 bits (165), Expect = 1e-12
Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 65/242 (26%)
Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLTAHREI 352
+ ++D G G A+ + + + +++ ++ + L +
Sbjct: 28 FAQLTDEVLYFAVYD-GHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF 86
Query: 353 KDSLHRYSLSAT-------LCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHA 403
+ + L + L +ASVG+++AILCR + LT H
Sbjct: 87 SSHARLSADATLLTSGTTATVAL----LRDGIELVVASVGDSRAILCRKGKPMKLTIDHT 142
Query: 404 PTL----------------SPPVPP--QGS--------------CPLSFPDPHVTEVML- 430
P + P G + +P + L
Sbjct: 143 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI-AEPETKRIKLH 201
Query: 431 HENDHFLILA---------N-------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474
H +D FL+L + +P AA + + A YG+EDN + +V+ F
Sbjct: 202 HADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 261
Query: 475 QG 476
Sbjct: 262 GA 263
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 67.0 bits (164), Expect = 1e-12
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 85 TSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
++L+S L LT L++ N +++L G + L +L TL L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-------TELGTLGL 90
Query: 143 NGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASH 199
NN+L SL V +L L + N+L+SLP + D +L+ + +
Sbjct: 91 A----------NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
N++ +P+ F +L L TL LS N+L S+P ++ L+ + L N
Sbjct: 141 NQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 61.2 bits (149), Expect = 1e-10
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTC 189
C+ N+ K V G SL SV +G I PA + LD+ L +L D
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSG-------I----PADTEKLDLQSTGLATLSDATFRGL 58
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSN 248
+L + +N++ L + F +L +L TL L+ N+L SLP + + L L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLP 278
+ LP +KLK L ++ N L+ +P
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Score = 53.9 bits (130), Expect = 3e-08
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 173 DISYNELESLPDWI--DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230
D L+S+P I DT E + + L F R L KL L L +N+L +L
Sbjct: 20 DCQGKSLDSVPSGIPADT----EKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTL 74
Query: 231 PSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ + + L L L +N + LP + ++L L + N LK LPS
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Score = 49.7 bits (119), Expect = 8e-07
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 32/128 (25%)
Query: 83 ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLK 138
EL ++ L +NQL G + + L L + N ++SL G +RL +LK
Sbjct: 84 ELGTLGLANNQLASLPLG--VFDHLTQLDKLYLGGNQLKSLPSGVFDRL-------TKLK 134
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPEL 192
L LN N+LQS+ P A LQ L +S N+L+S+P D +L
Sbjct: 135 ELRLN----------TNQLQSI---PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 193 ETIFASHN 200
+TI N
Sbjct: 182 QTITLFGN 189
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 65.9 bits (161), Expect = 1e-12
Identities = 45/194 (23%), Positives = 69/194 (35%), Gaps = 30/194 (15%)
Query: 68 EDGI-IVERREPEVKGELTSVNL--RSNQLKG-TIILGNYGNLTTLDVSENSIESLD-LG 122
+D I I E R+ V E V L ++ L L +S N+IE + L
Sbjct: 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS 67
Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
+ L + RN I I + + L+ L ISYN++ SL
Sbjct: 68 GMENLRILSLGRNL-----------IKKIENLDAV--------ADTLEELWISYNQIASL 108
Query: 183 PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKY 242
I+ L ++ S+N+IT L KL L L+ N L + + +
Sbjct: 109 SG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167
Query: 243 LFLQSNSINILPQL 256
+ LP L
Sbjct: 168 EV-----VKRLPNL 176
Score = 62.8 bits (153), Expect = 2e-11
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 10/150 (6%)
Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLP 206
I + + + A L +E + + T + + S N I ++
Sbjct: 10 AIRIFEERKSVVAT-----EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS 64
Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
S + L L L N + + +L +L+ L++ N I L ++ L+V
Sbjct: 65 S---LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRV 119
Query: 267 LNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
L +S N + + K L + L L G
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
Score = 61.6 bits (150), Expect = 3e-11
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 31/177 (17%)
Query: 109 LDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPAR 168
L IE +D L+ L++ K L L ++ I I+ L +
Sbjct: 30 LHGMIPPIEKMDAT-LSTLKA-------CKHLAL-STNNIEKISS---LSGME------N 71
Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
L+ L + N ++ + + LE ++ S+N+I L +L L L +S N++T
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG---IEKLVNLRVLYMSNNKIT 128
Query: 229 SLPSL--IRQIASLKYLFLQSNSI-NILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
+ + + + L+ L L N + N + + +++V +K LP+L+K
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV-------VKRLPNLKK 178
Score = 39.7 bits (93), Expect = 0.001
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKT 139
L ++L N +K I + L L +S N I SL + L L + S N++
Sbjct: 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW----IDTCPELETI 195
I +A +KL+ L+++ P L Y E + ++ + P L+ +
Sbjct: 130 W-----GEIDKLAALDKLEDLLLAGNP-----LYNDYKENNATSEYRIEVVKRLPNLKKL 179
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 64.3 bits (157), Expect = 3e-12
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
R + LD+ ++ + + T + + I S N I +L F L +L TL ++ N
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPL--LRRLKTLLVNNN 74
Query: 226 RLTSL-PSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKN----------- 272
R+ + L + + L L L +NS+ L L L + L L I +N
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 134
Query: 273 CLKMLPSLQK 282
+ +P ++
Sbjct: 135 VIYKVPQVRV 144
Score = 63.5 bits (155), Expect = 5e-12
Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
V L + ++ N LD+ I +E++ + +Q + +
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIP--------VIENLGATLDQFDAIDFS--- 50
Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQL 205
+N+++ L P RL+ L ++ N + + + + P+L + ++N + +L
Sbjct: 51 -------DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPS----LIRQIASLKYL 243
L L L + N +T+ +I ++ ++ L
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
Score = 52.4 bits (126), Expect = 4e-08
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
+ ++ +E + +I + + L + + S N + L
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLD 58
Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ 291
+ LK L + +N I + + Q L L ++ N L L L L +++
Sbjct: 59 GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 292 LRLPG 296
L +
Sbjct: 118 LCILR 122
Score = 36.9 bits (86), Expect = 0.006
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
+ +++ N+++ L TL V+ N I + G L L L+L
Sbjct: 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD-------LTELIL 95
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW----IDTCPELETI 195
+ + + + L SL L +L I N + + + I P++ +
Sbjct: 96 TN-NSLVELGDLDPLASL------KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
Score = 30.4 bits (69), Expect = 1.0
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 46/146 (31%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+E + + + + + + N I L F L
Sbjct: 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-----PLLRR---------- 65
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIES 118
L ++ + +N++ G + +LT L ++ NS+
Sbjct: 66 -----------------------LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV- 101
Query: 119 LDLGALNRLESIKCSRNQLKTLVLNG 144
+LG L+ L S+K L L +
Sbjct: 102 -ELGDLDPLASLKS----LTYLCILR 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 66.9 bits (164), Expect = 5e-12
Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 54/242 (22%)
Query: 84 LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L ++ L S + L + +L L + N + D+G + ++L
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG--DVGMAELCPGLLHPSSRL 258
Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS------------------PRPARLQH 171
+TL + L V+ L+ L ++ P L+
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ-LES 317
Query: 172 LDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG----KLHTLQL 222
L + + L + S+NR+ + C+ LG L L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377
Query: 223 SFNRLT-----SLPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKN 272
+ ++ SL + + SL+ L L +N + L + Q L+ L +
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437
Query: 273 CL 274
Sbjct: 438 YW 439
Score = 65.8 bits (161), Expect = 1e-11
Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 52/241 (21%)
Query: 84 LTSVNLRSNQLKGT------IILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
+ ++L++ L G L L L +S+N + D G E + + +L
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--DAGLQLLCEGLLDPQCRL 144
Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS-----------------PRPARLQHL 172
+ L L L SV+ + L VS P +L+ L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 173 DISYNEL-----ESLPDWIDTCPELETIFASHNRIT----QLPSQFFCRELGKLHTLQLS 223
+ + L + + L + N++ +L TL +
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264
Query: 224 FNRLTS-----LPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKNC 273
+T+ L ++R SLK L L N + +L + L+ +L+ L +
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324
Query: 274 L 274
Sbjct: 325 F 325
Score = 63.4 bits (155), Expect = 8e-11
Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 54/242 (22%)
Query: 84 LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
V L L + L L++ N + D+G L+ ++ ++
Sbjct: 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKI 87
Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS------------------PRPARLQH 171
+ L L L S + LQ L +S P+ RL+
Sbjct: 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-RLEK 146
Query: 172 LDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG----KLHTLQL 222
L + Y L E L + P+ + + S+N I + + C+ L +L L+L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206
Query: 223 SFNRLT-----SLPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKN 272
+T L ++ ASL+ L L SN + L L SS+L+ L I +
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266
Query: 273 CL 274
+
Sbjct: 267 GI 268
Score = 57.3 bits (139), Expect = 6e-09
Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 50/214 (23%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG--------SSLISVIAGNNK 156
++ +LD+ + L L ++ Q + + L+ + S + N
Sbjct: 4 DIQSLDIQCEELSDARWAEL--LPLLQ----QCQVVRLDDCGLTEARCKDISSALRVNPA 57
Query: 157 LQSLIVS-----------------PRPARLQHLDISYNEL-----ESLPDWIDTCPELET 194
L L + ++Q L + L L + T P L+
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 195 IFASHNRITQLPSQFFCRELG----KLHTLQLSFNRLTS-----LPSLIRQIASLKYLFL 245
+ S N + Q C L +L LQL + L++ L S++R K L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177
Query: 246 QSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
+N IN +L Q + +L+ L + +
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211
Score = 56.1 bits (136), Expect = 1e-08
Identities = 44/222 (19%), Positives = 71/222 (31%), Gaps = 41/222 (18%)
Query: 84 LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L + L L L + L VS N I + G + +K S QL
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN--EAGVRVLCQGLKDSPCQL 201
Query: 138 KTLVLNGSSL----ISVIAGNNKLQSLIVSPRPARLQHLDISYNELES------LPDWID 187
+ L L + + + L+ L + N+L P +
Sbjct: 202 EALKLESCGVTSDNCRDLC-----GIVASKAS---LRELALGSNKLGDVGMAELCPGLLH 253
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQ---LSFNRLTS------LPSLIRQIA 238
L T++ IT CR L +L+ L+ N L +L+
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313
Query: 239 SLKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCLK 275
L+ L+++S S + L + L L IS N L+
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLE 354
Score = 38.0 bits (89), Expect = 0.008
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 40/143 (27%)
Query: 84 LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L S+ ++S L L +S N +E D G + + + L
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE--DAGVRELCQGLGQPGSVL 372
Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL---------E 180
+ L L SSL + + N+ L+ LD+S N L E
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANH------------SLRELDLSNNCLGDAGILQLVE 420
Query: 181 SLPDWIDTCPELETIFASHNRIT 203
S+ LE + +
Sbjct: 421 SVR---QPGCLLEQLVLYDIYWS 440
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 63.2 bits (154), Expect = 2e-11
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 131 KCSRNQLKTLVLNGSSLISVIAG-----------NNKLQSL--IVSPRPARLQHLDISYN 177
+CS + T+ SV AG +N++ L V L+ L + N
Sbjct: 16 QCSCSG-TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74
Query: 178 ELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
+L +LP + D+ +L + N++T LPS F R L L L + N+LT LP I +
Sbjct: 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR-LVHLKELFMCCNKLTELPRGIER 133
Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
+ L +L L N + +P S L + N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 47.0 bits (112), Expect = 5e-06
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 31/127 (24%)
Query: 83 ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLK 138
L + L SNQL G + + LT LD+ N + L +RL LK
Sbjct: 65 NLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFDRL-------VHLK 115
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWI-DTCPELE 193
L + NKL L PR L HL + N+L+S+P D L
Sbjct: 116 ELFMC----------CNKLTEL---PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 194 TIFASHN 200
+ N
Sbjct: 163 HAYLFGN 169
Score = 35.8 bits (83), Expect = 0.021
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-----SL 280
R S+P+ I + + L+L N I L + LK L + N L LP SL
Sbjct: 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87
Query: 281 QKGFYL-LNISQLR-LPGFCNSDALIGIFDS 309
+ L L +QL LP +FD
Sbjct: 88 TQLTVLDLGTNQLTVLP--------SAVFDR 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 64.3 bits (157), Expect = 3e-11
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 35/220 (15%)
Query: 84 LTSVNLRSNQL--KGTIILG-----NYGNLTTLDVSENSIESLDLGAL-NRLESIKCSRN 135
+TS++L N L T+ L ++T+L++S NS+ + L L +I +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN-- 81
Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL-----ESLPDWIDTCP 190
+ +L L+G+ L +++L + + P + LD+ +N+ P
Sbjct: 82 -VTSLNLSGNFLSY--KSSDELVKTLAAI-PFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 191 E-LETIFASHNRITQLPSQFFCREL----GKLHTLQLSFNRLTS-----LPSLIRQI-AS 239
+ ++ N + S + L +++L L N L S L + I AS
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 240 LKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
+ L L +N + L +F + + LN+ NCL
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237
Score = 58.6 bits (142), Expect = 2e-09
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 57/246 (23%)
Query: 84 LTSVNLRSNQL--KGTIILG-----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQ 136
+TS+NL N L K + L N+T+L++S N + + ++++
Sbjct: 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS--YKSSDELVKTLAAIPFT 110
Query: 137 LKTLVLNG--------SSLISVIAGNNK-LQSLIVS-----------------PRPARLQ 170
+ L L S + + SL + PA +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 171 HLDISYNEL-----ESLPDWIDTCPE-LETIFASHNRITQLPSQFFCREL----GKLHTL 220
L++ N L L ++ + P + ++ S N + + +L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230
Query: 221 QLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQ-------LFLQNSSKLKVLN 268
L N L L L + L+ ++L + + + + N K+ +++
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290
Query: 269 ISKNCL 274
+ +
Sbjct: 291 KNGKEI 296
Score = 38.5 bits (90), Expect = 0.004
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 166 PARLQHLDISYNEL-----ESLPDWIDTCPE-LETIFASHNRITQLPSQFFCRELGK--- 216
P + LD+S N L L P + ++ S N + S + L
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80
Query: 217 -LHTLQLSFNRLTS------LPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKL 264
+ +L LS N L+ + +L ++ L L N + Q F + +
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140
Query: 265 KVLNISKNCL 274
LN+ N L
Sbjct: 141 TSLNLRGNDL 150
Score = 32.8 bits (75), Expect = 0.32
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 38/132 (28%)
Query: 84 LTSVNLRSNQLKGT------IILGNYGNLTTLDVSEN---------------------SI 116
+ S+NL N L G ++ + +L T+ + + I
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 117 ESLDL--------GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPAR 168
+D ++ I+ + L LI ++ L P
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDL---NIPDE 343
Query: 169 LQHLDISYNELE 180
L+ + L
Sbjct: 344 LRESIQTCKPLL 355
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 64.1 bits (156), Expect = 3e-11
Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 65/234 (27%)
Query: 302 ALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYS 360
++D G G A+ + + + +++ ++ + L + +
Sbjct: 150 LYFAVYD-GHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSA 208
Query: 361 L-------SATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTL----- 406
+ L + L +ASVG+++AILCR + LT H P
Sbjct: 209 DATLLTSGTTATVAL----LRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKE 264
Query: 407 -----------SPPVPP--QGS--------------CPLSFPDPHVTEVML-HENDHFLI 438
+ P G + +P + L H +D FL+
Sbjct: 265 RIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI-AEPETKRIKLHHADDSFLV 323
Query: 439 LA---------N-------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476
L + +P AA + + A YG+EDN + +V+ F
Sbjct: 324 LTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA 377
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 62.8 bits (152), Expect = 9e-11
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 164 PRPARLQHLDISYN-ELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
P L L I L+ L + EL + + + + F +L L
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLN 86
Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
LSFN L SL Q SL+ L L N ++
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 49.0 bits (116), Expect = 2e-06
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPS-LIRQIASLKYLFL 245
+ + + L L + + L L +R + L+ L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL---PGFCNSD 301
+ + + + +L LN+S N L+ L K L++ +L L P C+
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS--WKTVQGLSLQELVLSGNPLHCSCA 120
Score = 42.8 bits (100), Expect = 2e-04
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 83 ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
LT + + + Q + L G L L + ++ + + A RL + S N
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 137 LKTL---VLNGSSLISVIAGNNKLQ 158
L++L + G SL ++ N L
Sbjct: 92 LESLSWKTVQGLSLQELVLSGNPLH 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 65/393 (16%), Positives = 123/393 (31%), Gaps = 101/393 (25%)
Query: 162 VSPRPARLQHLDISYNELESLPDWI----------DTCPELETIFASHNRIT---QLPSQ 208
S RP L H + + L + PE FA+ + T +L +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 209 FFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL---FLQSNSINILPQLFLQNSSK-- 263
F LG + + + +++ ++ L +L+ N I+ L LQ +
Sbjct: 64 F----LGYV-SSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 264 LKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLV--- 320
+K + KN + I R ++ AL F + G+ +
Sbjct: 117 VKTKELIKN-----------YITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGG 162
Query: 321 QSIPRILLEE-RTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYML 379
Q EE R + Y Y +L + D + + TL L +
Sbjct: 163 QGNTDDYFEELRDL------YQTYHVL-----VGDLIKF--SAETLSELIRTTL------ 203
Query: 380 HIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLIL 439
+A+ + + L + P+ +P S P+S P V ++ H+++
Sbjct: 204 ------DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA-----HYVVT 252
Query: 440 ANKS----------------VSEPVLAAKRIQDLAQSYGSEDNLSVLVLR---FQGSEFD 480
A S+ ++ A I S+ S + F G
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAITVLFFIGVRC- 310
Query: 481 SRTRDAKLSSMRKLGVQDPECPWTIEYDRSSPS 513
+S+ ++D ++E + PS
Sbjct: 311 --YEAYPNTSLPPSILED-----SLENNEGVPS 336
Score = 45.8 bits (108), Expect = 4e-05
Identities = 69/377 (18%), Positives = 119/377 (31%), Gaps = 139/377 (36%)
Query: 10 DLTEFPGNQDSFPRLKFLSAA----------QNRISHLPVFLR-HPMSP------LNNVI 52
++ E+ N + P +L + Q ++H V + +P L
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 53 EHG--------IAEERE-EDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY 103
H IAE E F I V L + +R + Y
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAI------TV---LFFIGVRCYEA--------Y 314
Query: 104 GNLT-TLDVSENSIESLDLGALNRLESIK-CSRNQLKTLV------LNGSSLISVIAGNN 155
N + + E+S+E+ + G + + SI ++ Q++ V L + I+ N
Sbjct: 315 PNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVN 372
Query: 156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH----NRITQLP-SQFF 210
++L+VS P L L L A +RI P S+
Sbjct: 373 GAKNLVVSGPPQSLYGL----------------NLTLRKAKAPSGLDQSRI---PFSE-- 411
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
R+L F LP +AS P F +S L
Sbjct: 412 -RKL----KFSNRF-----LP-----VAS--------------P--F--HSHLLV----- 433
Query: 271 KNCLKMLPS-LQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGD-------IASTLVQS 322
++ L K N +++P ++D+ D D I+ +V
Sbjct: 434 -PASDLINKDLVKNNVSFNAKDIQIP----------VYDTFDGSDLRVLSGSISERIVDC 482
Query: 323 IPRILLE-ERTVKETAS 338
I R+ ++ E T + A+
Sbjct: 483 IIRLPVKWETTTQFKAT 499
Score = 37.3 bits (86), Expect = 0.015
Identities = 25/148 (16%), Positives = 39/148 (26%), Gaps = 52/148 (35%)
Query: 299 NSDALIGIFDSGDNGDIASTLVQSIPRILLE---ERTV-------KETASDYMKYTM--- 345
S A +++ DN T SI I++ T+ K +Y
Sbjct: 1638 TSKAAQDVWNRADN-HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 346 ---LTAHREIKDSLHRYSLSATLCH----LSL----HP--VTHRYML------------- 379
+I ++ +S S T LS P
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 380 -----HIASVGE--AKAILCRQAGSLTF 400
H S+GE A L A ++
Sbjct: 1757 ATFAGH--SLGEYAA---LASLADVMSI 1779
Score = 33.9 bits (77), Expect = 0.19
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 18/80 (22%)
Query: 63 DFEQDEDGIIVERREPEVKGELTSV---NLRSNQLKGTIILGNYGNLTTLDV-----SEN 114
F Q+ +VER G L + N+ + Q + G+L LD +
Sbjct: 1820 SFSQEALQYVVERVGKR-TGWLVEIVNYNVENQQ----YVAA--GDLRALDTVTNVLNFI 1872
Query: 115 SIESLDLGALN---RLESIK 131
++ +D+ L LE ++
Sbjct: 1873 KLQKIDIIELQKSLSLEEVE 1892
Score = 29.2 bits (65), Expect = 5.3
Identities = 42/203 (20%), Positives = 69/203 (33%), Gaps = 57/203 (28%)
Query: 4 FRVDRNDL--TEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHP-MSPLNNVIE-H--GIA 57
FR ++ L T+F Q P L + A L+ + P + H G
Sbjct: 1719 FRSEKGLLSATQF--TQ---PALTLMEKAAFED------LKSKGLIPADATFAGHSLG-- 1765
Query: 58 EEREE-----------DFEQDEDGI-IVERREPEVKGELTSVNLRSNQLKGTIILGNYGN 105
E E + +V R G V + ++L NYG
Sbjct: 1766 ----EYAALASLADVMSIE---SLVEVVFYR-----GMTMQVAVPRDELGR----SNYG- 1808
Query: 106 LTTLDVSENSI-ESLDLGALNRL-ESIKCSRNQLKTLV-LNGSSLISVIAGNNK-LQSLI 161
+ ++ + S AL + E + L +V N + V AG+ + L ++
Sbjct: 1809 --MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 162 VSPRPARLQHLDISYNEL-ESLP 183
+LQ +DI EL +SL
Sbjct: 1867 NVLNFIKLQKIDII--ELQKSLS 1887
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 57.8 bits (140), Expect = 3e-10
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL- 230
LD S + L D ELE + + +T + + +L KL L+LS NR++
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGL 80
Query: 231 PSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKN-----------CLKMLP 278
L + +L +L L N I L + L+ LK L++ K+LP
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140
Query: 279 SLQK 282
L
Sbjct: 141 QLTY 144
Score = 47.4 bits (113), Expect = 1e-06
Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 46/166 (27%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
EL N RSN+ K + + L L + S+
Sbjct: 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---------------------- 58
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNR 201
L L +L+ L++S N + + + + CP L + S N+
Sbjct: 59 -------------NLPKLN------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLP----SLIRQIASLKYL 243
I L + ++L L +L L +T+L ++ + + L YL
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
Score = 45.8 bits (109), Expect = 5e-06
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
T +++ + ++R + + E +L L LTS+ +L ++ LK L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL-PKLNKLKKLELSD 73
Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
N ++ ++ + L LN+S N +K L +++ L N+ L L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Score = 33.9 bits (78), Expect = 0.059
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 46/139 (33%)
Query: 8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
R++ + G D F L+FLS ++ + LN
Sbjct: 28 RSNEGKLEGLTDEFEELEFLSTINVGLTSIANL-----PKLNK----------------- 65
Query: 68 EDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALN 125
L + L N++ G ++ NLT L++S N I+ DL +
Sbjct: 66 ----------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK--DLSTIE 107
Query: 126 RLESIKCSRNQLKTLVLNG 144
L+ ++ LK+L L
Sbjct: 108 PLKKLEN----LKSLDLFN 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 58.8 bits (143), Expect = 3e-10
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
P + L + N+ +P + L I S+NRI+ L +Q F + +L TL LS+N
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYN 88
Query: 226 RLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
RL +P + SL+ L L N I+++P+ + S L L I N
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 46.9 bits (112), Expect = 3e-06
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 31/125 (24%)
Query: 85 TSVNLRSNQLKGT-IILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
T + L NQ L NY +LT +D+S N I +L + + + QL TL+L+
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-------TQLLTLILS 86
Query: 144 GSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELETI 195
N+L+ + P R L+ L + N++ +P+ + L +
Sbjct: 87 ----------YNRLRCI-----PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Query: 196 FASHN 200
N
Sbjct: 132 AIGAN 136
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 220 LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
L L N+ T +P + L + L +N I+ L N ++L L +S N L+ +P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Score = 39.2 bits (92), Expect = 0.001
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 45/123 (36%)
Query: 83 ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
LT ++L +N++ T+ N L TL +S N + + + L L+
Sbjct: 55 HLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL-------KSLRL 106
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHL-----------DISYNELESLP 183
L L+ N + + P A L HL ++ + L
Sbjct: 107 LSLH----------GNDISVV---PEGAFNDLSALSHLAIGANPLYCDCNMQW-----LS 148
Query: 184 DWI 186
DW+
Sbjct: 149 DWV 151
Score = 36.5 bits (85), Expect = 0.012
Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 46/136 (33%)
Query: 2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIAEE 59
E +D N T P ++ L + + NRIS L F S +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF-----SNMTQ--------- 79
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENS 115
L ++ L N+L+ +L L + N
Sbjct: 80 ------------------------LLTLILSYNRLRCIPPR--TFDGLKSLRLLSLHGND 113
Query: 116 IESLDLGALNRLESIK 131
I + GA N L ++
Sbjct: 114 ISVVPEGAFNDLSALS 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 58.9 bits (143), Expect = 4e-10
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 27/170 (15%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
T+V S ++ G T LD+ NS++SL G + L L L L G
Sbjct: 10 TTVECYSQGRT-SVPTGIPAQTTYLDLETNSLKSLPNGVFDEL-------TSLTQLYLGG 61
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRIT 203
+ L S+ G V + L +L++S N+L+SLP+ + D +L+ + + N++
Sbjct: 62 NKLQSLPNG--------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLFLQSN 248
LP F + L +L L+L N+L S+P L SL+Y++L N
Sbjct: 114 SLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRL----TSLQYIWLHDN 158
Score = 55.5 bits (134), Expect = 6e-09
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
PA+ +LD+ N L+SLP+ + D L ++ N++ LP+ F + L L L LS
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK-LTSLTYLNLST 85
Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
N+L SLP+ + ++ LK L L +N + LP ++LK L + +N LK +P
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 34.3 bits (79), Expect = 0.070
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 48/125 (38%)
Query: 83 ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLK 138
LT +NL +NQL+ G + L L ++ N ++SL G ++L QLK
Sbjct: 77 SLTYLNLSTNQLQSLPNG--VFDKLTQLKELALNTNQLQSLPDGVFDKL-------TQLK 127
Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHL------------DISYNELES 181
L L N+L+S+ P LQ++ I Y
Sbjct: 128 DLRLY----------QNQLKSV---PDGVFDRLTSLQYIWLHDNPWDCTCPGIRY----- 169
Query: 182 LPDWI 186
L +WI
Sbjct: 170 LSEWI 174
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 57.4 bits (139), Expect = 5e-10
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 20/147 (13%)
Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSL-ISVIAG--------------NNKLQSLI 161
+D+ LE + ++ LVL+ I G N L S+
Sbjct: 6 SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS 65
Query: 162 VSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
P+ +L+ L++S N + D + + P L + S N++ + + ++L L +L
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125
Query: 221 QLSFNRLTSLP----SLIRQIASLKYL 243
L +T+L S+ + + L YL
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 45.9 bits (109), Expect = 5e-06
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
+ + + + + E L L L L S+ +L ++ LK L L N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL-PKLPKLKKLELSENR 82
Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
I + + L LN+S N LK + +L+ L + L L
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Score = 35.9 bits (83), Expect = 0.013
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L ++L + L L L L++SEN I +L + L L L
Sbjct: 50 NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPN-------LTHLNL 102
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW----IDTCPELETI 195
+G + + I+ L+ L L+ LD+ E+ +L D+ P+L +
Sbjct: 103 SG-NKLKDISTLEPLKKL------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 33.2 bits (76), Expect = 0.10
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 46/139 (33%)
Query: 8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
+++ + G F L+FLS + + + P
Sbjct: 35 KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP----------------------- 71
Query: 68 EDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALN 125
+L + L N++ G ++ NLT L++S N ++ D+ L
Sbjct: 72 ---------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK--DISTLE 114
Query: 126 RLESIKCSRNQLKTLVLNG 144
L+ ++C LK+L L
Sbjct: 115 PLKKLEC----LKSLDLFN 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 57.3 bits (139), Expect = 1e-09
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 166 PARLQHLDISYNELESLPDW--IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
P L ++ NEL + P L + N++T + F + LQL
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86
Query: 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
N++ + + + + LK L L N I+ + ++ + L LN++ N
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 45.8 bits (109), Expect = 8e-06
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256
+ N + ++ S L L L+L N+LT + + ++ L L N I +
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 257 FLQNSSKLKVLNISKNCLKMLP 278
+LK LN+ N + +
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVM 118
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 33/127 (25%)
Query: 85 TSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
T + L N+ + + G +L L++ N + ++ A ++ L
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-------HIQELQ 84
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELE 193
L NK++ + + L+ L++ N++ + + L
Sbjct: 85 LG----------ENKIKEI-----SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 194 TIFASHN 200
++ + N
Sbjct: 130 SLNLASN 136
Score = 36.1 bits (84), Expect = 0.013
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 35/118 (29%)
Query: 83 ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
L + L+ NQL I ++ L + EN I+ + L +QLKT
Sbjct: 55 HLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGL-------HQLKT 106
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYN------ELESLPDWI 186
L L +N++ + + L L+++ N L +W+
Sbjct: 107 LNLY----------DNQISCV---MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151
Score = 31.1 bits (71), Expect = 0.66
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINIL-PQLFLQNSSKLKVLNISKNCLKMLPS 279
L +P I L L N + + L L + +N L +
Sbjct: 19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Score = 30.0 bits (68), Expect = 1.3
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 46/137 (33%)
Query: 2 QEFRVDRNDLTEFP--GNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
E ++ N+L G P L L +N+++ + F
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----------------- 74
Query: 58 EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG---NYGNLTTLDVSEN 114
+G + + L N++K I L TL++ +N
Sbjct: 75 -----------EGAS----------HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDN 112
Query: 115 SIESLDLGALNRLESIK 131
I + G+ L S+
Sbjct: 113 QISCVMPGSFEHLNSLT 129
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 58.2 bits (141), Expect = 2e-09
Identities = 32/260 (12%), Positives = 72/260 (27%), Gaps = 77/260 (29%)
Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLT 347
+ + +P + ++D G G + + + + + + +
Sbjct: 43 TAVVGIPHGLEDWSFFAVYD-GHAGSRVANYCSTHLLEHITTNEDFRA--AGKSGSALEL 99
Query: 348 AHREIKDSLHRYSLSATLCHLSLHPVTHRY---------------MLHIASVGEAKAILC 392
+ +K+ + L + + + ++ + G+++A+L
Sbjct: 100 SVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLY 159
Query: 393 R--QAGSLTFTHAPTLS-----------------------------------PPVPPQGS 415
R Q T H P
Sbjct: 160 RNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTE 219
Query: 416 CPLSFPDPHVTEVMLHENDHFLILA--------------------NKSVSEPVLAAKRIQ 455
+S P+P V E++ E D F+ILA + + +
Sbjct: 220 QLVS-PEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVV 278
Query: 456 DLAQSYGSEDNLSVLVLRFQ 475
D GS DN+S++++ F
Sbjct: 279 DTCLHKGSRDNMSIVLVCFS 298
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 58.6 bits (142), Expect = 2e-09
Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 37/224 (16%)
Query: 84 LTSVNLRSNQL--KGTIILGNY----GNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L +V L N L ++ L L + N + ++ +
Sbjct: 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG--PQAGAKIARAL--QELAV 151
Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVS------PRPARLQHLDISYNELES------LPDW 185
N L S+I G N+L++ + L + + N + L +
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211
Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFNRLTS-----LPSLIRQI 237
+ C EL+ + N T L S L L L L+ L++ + ++
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271
Query: 238 A--SLKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
L+ L LQ N I L + + L L ++ N
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 57.0 bits (138), Expect = 7e-09
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 46/231 (19%)
Query: 84 LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESI-----KC 132
+ + L N + + L + +L + S+ + L + KC
Sbjct: 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93
Query: 133 SRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL---------ESLP 183
+L T+ L+ ++ L + P L+HL + N L +L
Sbjct: 94 P--KLHTVRLSDNAFGP--TAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQ 147
Query: 184 D-----WIDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFNRLTS------ 229
+ P L +I NR+ + + + LHT+++ N +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 230 LPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKNCLK 275
L + LK L LQ N+ + L L++ L+ L ++ L
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLS 257
Score = 56.3 bits (136), Expect = 1e-08
Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 46/236 (19%)
Query: 79 EVKGELTSVNLRSNQLKGTIILGNYG------------NLTTLDVSENSIESLDLGALNR 126
K +L L T+ +S+N+
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG--PTAQEPL 114
Query: 127 LESIKCSRNQLKTLVLN--------GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
++ + L+ L L+ G+ + + + +P L+ + N
Sbjct: 115 IDFLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP---PLRSIICGRNR 170
Query: 179 LES-----LPDWIDTCPELETIFASHNRITQLPSQFFCRELGK----LHTLQLSFNRLT- 228
LE+ + L T+ N I + E L L L N T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230
Query: 229 ----SLPSLIRQIASLKYLFLQSNSI------NILPQLFLQNSSKLKVLNISKNCL 274
+L ++ +L+ L L + ++ + L+ L + N +
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
Score = 37.0 bits (86), Expect = 0.013
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 32/157 (20%)
Query: 169 LQHLDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGK---LHTL 220
++ + + + +S+ + ++ I S N I +++ + L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 221 QLSFNRLTSLPSLIRQIA-----------SLKYLFLQSNSI--NILPQL--FLQNSSKLK 265
+ S + I + L + L N+ L FL + L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 266 VLNISKNCL---------KMLPSLQKGFYLLNISQLR 293
L + N L + L L N LR
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 56.7 bits (137), Expect = 8e-09
Identities = 38/275 (13%), Positives = 75/275 (27%), Gaps = 75/275 (27%)
Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLT 347
+ + LP S + ++D G G + + + + K +A +
Sbjct: 41 TAVIGLPSGLESWSFFAVYD-GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKN 99
Query: 348 AHREIKDSLHRYSLSATLCHLSLHPVTH-----------RYMLHIASVGEAKAILCR--Q 394
I+ + H + + G+++ +LCR +
Sbjct: 100 G---IRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRK 156
Query: 395 AGSLTFTHAPTL-----------------------------------SPPVPPQGSCPLS 419
T H P+ +S
Sbjct: 157 VHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVS 216
Query: 420 FPDPHVTEVML-HENDHFLILA--------------------NKSVSEPVLAAKRIQDLA 458
P+P V ++ E+D F+ILA + + + D
Sbjct: 217 -PEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTC 275
Query: 459 QSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRK 493
GS DN+SV+++ F + S K + + K
Sbjct: 276 LYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDK 310
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 53.8 bits (130), Expect = 1e-08
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P+ L++ N+L+SLP + D +L + S N+I LP F + L KL L L
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHE 85
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
N+L SLP+ + ++ LK L L +N + +P + L+ + + N
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 35.7 bits (83), Expect = 0.018
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 48/124 (38%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
+LT ++L NQ++ SL G ++L +L L L
Sbjct: 53 QLTKLSLSQNQIQ----------------------SLPDGVFDKL-------TKLTILYL 83
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELETIF 196
+ NKLQSL P +L+ L + N+L+S+PD I D L+ I+
Sbjct: 84 H----------ENKLQSL---PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130
Query: 197 ASHN 200
N
Sbjct: 131 LHTN 134
Score = 35.3 bits (82), Expect = 0.023
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-----SL 280
LTS+P+ I +S L L+SN + LP ++L L++S+N ++ LP L
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 281 QKGFYL-LNISQL-RLPGFCNSDALIGIFDS 309
K L L+ ++L LP G+FD
Sbjct: 76 TKLTILYLHENKLQSLPN--------GVFDK 98
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 54.6 bits (131), Expect = 4e-08
Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 66/202 (32%)
Query: 375 HRYMLHIASVGEAKAILCR--QAGSLTFTHAPTL-------------------------- 406
Y +H+AS+G ++ +L A L+ H +
Sbjct: 164 GIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGV 223
Query: 407 -------------SPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA------------- 440
+S P VT + D ++
Sbjct: 224 VPMTRAFGSFDFKKGGQGKLQQDLVS-AVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAA 281
Query: 441 --------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMR 492
S + AAK + A+ N+S V S +R++ +
Sbjct: 282 IAAAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPESR--TRSQKMLEGTSG 339
Query: 493 KLGVQDPECPWTIEYDRSSPSG 514
+ G +D T E ++ +G
Sbjct: 340 ENGEEDFSIDRTNELTQALQAG 361
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 50.7 bits (122), Expect = 1e-07
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 131 KCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTC 189
+CS +Q + L SV AG I P Q L ++ N++ L + D
Sbjct: 9 QCSCDQ-TLVNCQNIRLASVPAG-------I----PTDKQRLWLNNNQITKLEPGVFDHL 56
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLF 244
L+ ++ + N++T +P+ F + L +L L L+ N L S+P +L SL +++
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDK-LTQLTQLDLNDNHLKSIPRGAFDNL----KSLTHIY 111
Query: 245 LQSN 248
L +N
Sbjct: 112 LYNN 115
Score = 36.1 bits (84), Expect = 0.012
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 220 LQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
L L+ N++T L + + +L+ L+ SN + +P ++L L+++ N LK +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Score = 29.1 bits (66), Expect = 2.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 83 ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIK 131
L + SN+L G + LT LD+++N ++S+ GA + L+S+
Sbjct: 58 NLQQLYFNSNKLTAIPTG--VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 51.0 bits (122), Expect = 4e-07
Identities = 50/264 (18%), Positives = 79/264 (29%), Gaps = 95/264 (35%)
Query: 302 ALIGIFDSGDNGDIASTLVQS-IPRILLEE-RTVKETASDY----------MKYTMLTAH 349
G++D G G + + + L EE K SD + + L
Sbjct: 53 HFFGVYD-GHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVD 111
Query: 350 REIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLS 407
EI+ S ++ + V + +A+ G+++A+LCR A L+ H P
Sbjct: 112 SEIESVAPETVGSTSVVAV----VFPS-HIFVANCGDSRAVLCRGKTALPLSVDHKPDRE 166
Query: 408 ------------------PPVPPQGSCPLS------------FPDPHVTEVMLHENDHFL 437
V G +S PDP VT V + D L
Sbjct: 167 DEAARIEAAGGKVIQWNGARV--FGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCL 224
Query: 438 ILA-------------------------------------------NKSVSEPVLAAKRI 454
ILA + AA+ +
Sbjct: 225 ILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYL 284
Query: 455 QDLAQSYGSEDNLSVLVLRFQGSE 478
LA GS+DN+SV+V+ +
Sbjct: 285 SKLAIQRGSKDNISVVVVDLKPRR 308
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 51.1 bits (122), Expect = 5e-07
Identities = 46/305 (15%), Positives = 83/305 (27%), Gaps = 95/305 (31%)
Query: 273 CLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEER 331
L + + + + G++D G G + + + L EE
Sbjct: 34 VSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYD-GHGGHKVADYCRDRLHFALAEEI 92
Query: 332 TVKETAS--------------DYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHP----- 372
+ LT EI+ + R + ++ L
Sbjct: 93 ERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVG 152
Query: 373 ------VTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLSP----------PVPPQG 414
+ + +++ G+++A+L R +A L+ H P V
Sbjct: 153 STAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQ 212
Query: 415 SC------------------PLSFPDPHVTEVMLHENDHFLILA---------------- 440
P P+P VT + D LILA
Sbjct: 213 GARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 272
Query: 441 ---------------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ-GSE 478
AA + LA GS+DN+S++V+ + +
Sbjct: 273 ARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK 332
Query: 479 FDSRT 483
F +RT
Sbjct: 333 FKTRT 337
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 48.5 bits (116), Expect = 3e-06
Identities = 29/264 (10%), Positives = 78/264 (29%), Gaps = 85/264 (32%)
Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEE-------------RTVKETASD 339
+ F + + ++D G G + +P L +
Sbjct: 44 ILNFDDQCSFFAVYD-GHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDAT 102
Query: 340 YMKYTMLTAHREIKDSLHRYSLSATLCHLS--LHPVTHRYMLHIASVGEAKAILCR--QA 395
++ ++ + + + + H L++A+ G+++ ++CR +A
Sbjct: 103 LLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKA 162
Query: 396 GSLTFTHAPTL-------------------------------------SPPVPPQGSCPL 418
++F H P + +P + +
Sbjct: 163 LEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQ-MI 221
Query: 419 SFPDPHVTEVMLHENDHFLILA---------------------NKSVSEPVLAAKRIQDL 457
S P + ++ + D F++LA NK + + + D
Sbjct: 222 S-ALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDH 280
Query: 458 AQSYGSE------DNLSVLVLRFQ 475
+ + DN++ ++++F+
Sbjct: 281 CLAPHTRGDGTGCDNMTAIIVQFK 304
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 47.4 bits (112), Expect = 7e-06
Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 66/193 (34%)
Query: 371 HPVTHRYMLHIASVGEAKAILCRQAGS---LTFTHAPTL--------------------- 406
+++ ++G+++A L G L+ H P
Sbjct: 167 TIPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETFDVPR 226
Query: 407 -----------------SPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA--------- 440
P P + P V + L+LA
Sbjct: 227 VDGVLALSRAFGDSDFKMNPNLPPEEQKVI-AVPDVRQFYALS-SDLLLLACDGVYEPSG 284
Query: 441 --------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDA 486
+S + A R+ D A S+DN+SV+++ F E + T
Sbjct: 285 MDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNSQDNISVMLVAFHNQEVEHPTAVY 344
Query: 487 KLSSMRKLGVQDP 499
K+ S + V+
Sbjct: 345 KVVSGQVDKVEWD 357
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 46.2 bits (110), Expect = 2e-05
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 22/80 (27%)
Query: 421 PDPHVTEVMLHENDHFLILA-----------------NKSVSEPVLAAKRI-----QDLA 458
P V V + +ILA ++ E A+ + +
Sbjct: 245 NQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQ 304
Query: 459 QSYGSEDNLSVLVLRFQGSE 478
S DN++ + + F+ ++
Sbjct: 305 SRNQSADNITAMTVFFKKTD 324
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 46.1 bits (108), Expect = 2e-05
Identities = 49/311 (15%), Positives = 99/311 (31%), Gaps = 44/311 (14%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
++ V+ + ++ A+ ++ + L+ P I G
Sbjct: 61 TKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYE 120
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY-GNLTTLDVSENSIESL 119
ED DGI+ + + + + I +L+ + + + +L
Sbjct: 121 GEDCSDIADGIVENKEKFA---HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNL 177
Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+ N L K R LK+L + IS ++ ++ ++ S P L+ L +
Sbjct: 178 KIKGTNNLSIGKKPRPNLKSLEI-----ISGGLPDSVVEDILGSDLPN-LEKLVLYVGVE 231
Query: 180 ESLPD----------WIDTCPELETIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRL 227
+ D D P L+ + + + F L +L T+ +S L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
Query: 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL--KMLPSLQKGF- 284
T R + + LK +N+ N L +M LQK
Sbjct: 292 TD--EGARLLLDH-----------------VDKIKHLKFINMKYNYLSDEMKKELQKSLP 332
Query: 285 YLLNISQLRLP 295
+++S +
Sbjct: 333 MKIDVSDSQEY 343
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 43.6 bits (103), Expect = 1e-04
Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
+L L+++ + + + + R+ L + L L L++L P
Sbjct: 73 SLRQLNLAGVRMTPVKCTVV--AAVLGSGRHALDEVNLASCQL-----DPAGLRTL--LP 123
Query: 165 RPARLQHLDISYNEL---------ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG 215
R + L + N L + L + ++ T+ S+N +T L
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLL---LHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180
Query: 216 ---KLHTLQLSFNRLT-----SLPSLIRQIASLKYLFLQSNSINILP----QLFLQNSSK 263
+ L L L L + + + L+ L + N +
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240
Query: 264 LKVLNISKNCL 274
L++L++ N L
Sbjct: 241 LELLHLYFNEL 251
Score = 42.0 bits (99), Expect = 4e-04
Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 47/218 (21%)
Query: 79 EVKGELTSVNLRSNQLK-------GTIILGNYGNLTTLDVSENSI-----ESLDLGALNR 126
EV L +NL ++ ++ L ++++ + +L L R
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLR 127
Query: 127 LESIKCSRNQL---------KTLVLNGSSLISVIAGNNKLQS---------LIVSPRPAR 168
+ N L L+ + + ++ NN L + L +
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS--- 184
Query: 169 LQHLDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG---KLHTL 220
+ HL + + L E L +D +L+ + ++N + R L L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244
Query: 221 QLSFNRLT-----SLPSLIRQIASLKYLFLQSNSINIL 253
L FN L+ L L + + +
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282
Score = 33.2 bits (76), Expect = 0.24
Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 22/158 (13%)
Query: 84 LTSVNLRSNQL--KGTIILGNY----GNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L +N+ N + L +L L + N + G + +
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS--SEGRQVLRDLGGAAEGGA 270
Query: 138 KTLVLN---------GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW--- 185
+ +V S ++S + N R L D+ + +L W
Sbjct: 271 RVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKA 330
Query: 186 --IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
+ E+ + + + K
Sbjct: 331 QLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHH 368
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 43.1 bits (101), Expect = 1e-04
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 24/182 (13%)
Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE--LE 180
AL + R + ++ SS N + + + D S L+
Sbjct: 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 135
Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRLTSL---PSLIR 235
L D + I NR + + + + +L +L LS NRL L S+++
Sbjct: 136 GLR--SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN---------------CLKMLPSL 280
+ +LK L L N + +L KL+ L + N + P L
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKL 253
Query: 281 QK 282
+
Sbjct: 254 LR 255
Score = 32.7 bits (74), Expect = 0.23
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 81 KGELTSVNLRSNQLKG-TIILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSR 134
+ +N RS II N L +L++S N + LD + L+ + S
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 135 NQLKTL----VLNGSSLISVIAGNN 155
N+LK+ + G L + N
Sbjct: 206 NELKSERELDKIKGLKLEELWLDGN 230
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 41.1 bits (97), Expect = 3e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
+D S L S+P I T + ++ N+IT+L F R L +L L L N+LT
Sbjct: 12 TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTV 68
Query: 230 LPS-LIRQIASLKYLFLQSN 248
LP+ + ++ L L L N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDN 88
Score = 40.3 bits (95), Expect = 4e-04
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 47/136 (34%)
Query: 131 KCSRNQLKTLVLNGSSLISVIAG-----------NNKLQSLI--VSPRPARLQHLDISYN 177
+CS + T+ +G SL SV G +N++ L V R +L LD+ N
Sbjct: 6 QCSCSG-TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----S 232
+L LP +F L +L L L+ N+L S+P +
Sbjct: 65 QLTVLP---------AGVFDK---------------LTQLTQLSLNDNQLKSIPRGAFDN 100
Query: 233 LIRQIASLKYLFLQSN 248
L SL +++L +N
Sbjct: 101 L----KSLTHIWLLNN 112
Score = 35.3 bits (82), Expect = 0.023
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
T+ S L S+P+ I + + L+L N I L ++L L++ N L +LP
Sbjct: 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 279 S 279
+
Sbjct: 71 A 71
Score = 29.5 bits (67), Expect = 1.9
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 83 ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIK 131
+LT ++L +NQL + G LT L +++N ++S+ GA + L+S+
Sbjct: 55 QLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 39.2 bits (91), Expect = 0.003
Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ 158
I+ + + TL + E+S D L+ L + + L+ L + + L+
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHEL-AQHNT--SLEVLNFYMTEFAKI--SPKDLE 213
Query: 159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI-FASHNRITQLPSQFF-CRELGK 216
++ + L + + E+ L + LE S N +P ++ K
Sbjct: 214 TI--ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271
Query: 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSI--NILPQLFLQNSSKLKVLNISKNCL 274
L L LS+ +P L A ++ L L + L +Q L+VL N +
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL-IQKCPNLEVLETR-NVI 329
Score = 33.8 bits (77), Expect = 0.16
Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 43/189 (22%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS---SLISVIAGNN 155
+ + LD+ +E+ D L + KC L+ L + V+A
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQ----KCP--NLEVLETRNVIGDRGLEVLAQYC 341
Query: 156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG 215
K +L+ L I + + + ++Q +
Sbjct: 342 K-----------QLKRLRIER------------GADEQGMEDEEGLVSQRGLIALAQGCQ 378
Query: 216 KLHTLQLSFNRLT-----SLPSLIRQIASLKYLFL-QSNSINILP-----QLFLQNSSKL 264
+L + + + +T S+ + ++ + + + L + I LP + L KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438
Query: 265 KVLNISKNC 273
+
Sbjct: 439 RRFAFYLRQ 447
Score = 30.7 bits (69), Expect = 1.6
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 24/148 (16%)
Query: 105 NLTTLDVSENSIESLDLGA-------LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL 157
L + V + I + L + L + R + T + + + S++ G KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438
Query: 158 QSLIVSPRPA---------------RLQHLDISYNEL--ESLPDWIDTCPELETIFASHN 200
+ R ++ + + Y E L ++ CP L+ +
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLT 228
++ +L L L + R +
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYRAS 526
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 38.0 bits (88), Expect = 0.008
Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 50/211 (23%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ 158
+ +Y L + + + L + + K LVL+ S + L
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELI----AKSFKN--FKVLVLSSCEGFS----TDGLA 149
Query: 159 SLIVSPRPARLQHLDISYNELESLPDWI-----DTCPELETIFAS--HNRITQLPSQFFC 211
++ + R L+ LD+ ++++ + DT L ++ S + ++ +
Sbjct: 150 AIAATCR--NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207
Query: 212 RELGKLHTLQLSFNR-LTSLPSLIRQIASLKYLFLQSNSINILPQLF------------- 257
L +L+L+ L L +L+++ L+ L + + P ++
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267
Query: 258 -----------------LQNSSKLKVLNISK 271
S+L LN+S
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 35.4 bits (81), Expect = 0.046
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 13/92 (14%)
Query: 393 RQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEV-MLHENDHFLILA---------NK 442
R+ G + T + S P+ +P + L FL+L
Sbjct: 241 RRIGDYKVKYGYTDIDLLSAAKSKPII-AEPEIHGAQPLDGVTGFLVLMSEGLYKALEAA 299
Query: 443 SVSEPV--LAAKRIQDLAQSYGSEDNLSVLVL 472
A I S D ++ V+
Sbjct: 300 HGPGQANQEIAAMIDTEFAKQTSLDAVAQAVV 331
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 32.6 bits (75), Expect = 0.28
Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 69/214 (32%)
Query: 313 GDIASTL-VQSIPRILLEE-RTVKETASDYMKYTMLTAHREIKDSLHRYSLSA----TLC 366
G+ AS L V I + L ++ ++ L A+ I + + S A T
Sbjct: 42 GEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAV 101
Query: 367 HLSLHPVTHRYMLHIASVGEAKAILCRQ------------------AGSLT----FTHAP 404
+ L R A VG+++ R+ GSLT H
Sbjct: 102 VILLDEKGDR--AWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQARQH-- 157
Query: 405 TLSPPVPPQ--------GSCPLSFPDPHVTEVMLHENDHFL-----------------IL 439
P G LS D + + L D L L
Sbjct: 158 -------PWRHVLSQCLGREDLSQID--IQPIDLEPGDRLLLCSDGLTEELTDDVISIYL 208
Query: 440 ANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLR 473
+ +V + AA + D A+++G DN++V+V+
Sbjct: 209 SEPNVQK---AAAALVDAAKTHGGRDNVTVVVIS 239
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 32.2 bits (74), Expect = 0.35
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 20/71 (28%)
Query: 422 DPHVTEVMLHENDHFL-----------------ILANKSVSEPVLAAKRIQDLAQSYGSE 464
+P +T D +L L V+E +A R+ +LA G
Sbjct: 169 EPTLTMREARAGDRYLLCSDGLSDPVSDETILEALQIPEVAE---SAHRLIELALRGGGP 225
Query: 465 DNLSVLVLRFQ 475
DN++V+V +
Sbjct: 226 DNVTVVVADLE 236
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 30.9 bits (70), Expect = 0.39
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 217 LHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN------SINILPQLFLQNSSKLKVLNI 269
L L+ N LT+LP L+ + +L+ L +N + L + ++
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDL 92
Query: 270 SKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDAL 303
C + P +G L +++ L C L
Sbjct: 93 R--C--VAPPALRGRLLPYLAEDELRAACAPGPL 122
Score = 29.0 bits (65), Expect = 1.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHN 200
P L ++ N L +LP + D P L T N
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 3.8
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
SLP+ L L N++ LP L L+ ++ N
Sbjct: 21 TWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 31.9 bits (73), Expect = 0.42
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 421 PDPHVTEVMLHENDHFLI----LAN-----------KSVSEPVLAAKRIQDLAQSYGSED 465
+P + +L E D+ ++ L N + + LA G D
Sbjct: 177 VEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLD 236
Query: 466 NLSVLVLRFQGSE 478
N++V ++ +
Sbjct: 237 NITVALVYVESEA 249
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 31.8 bits (73), Expect = 0.43
Identities = 24/206 (11%), Positives = 52/206 (25%), Gaps = 63/206 (30%)
Query: 313 GDIASTL-VQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSA----TLCH 367
GD A+ + + +L + + +L A + + + T+
Sbjct: 25 GDEAAQRALSASVGVLDAGGSPLDA--------VLAAQAAVHRWASQGGILGRTGATMAV 76
Query: 368 LSLHPVTHRYMLHIASVGEAKAILCRQ------------------AGSLTFTHAPTLSPP 409
+++ L ASVG+ + L + G
Sbjct: 77 AAVNLRDGT--LEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPG------- 127
Query: 410 VPPQ--------GSCPLSFPDPHVTEVMLHENDHFLI-------------LANKSVSEPV 448
P G L+ + L + L+ +A
Sbjct: 128 --PAGEMITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAMALSRGSD 185
Query: 449 LAAKRIQDLAQSYGSEDNLSVLVLRF 474
+ AQ +DN ++ ++
Sbjct: 186 ARGILQEVEAQGRPYQDNATLALVIL 211
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 31.4 bits (72), Expect = 0.69
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 20/71 (28%)
Query: 421 PDPHVTEVMLHENDHFL-----------------ILANKSVSEPVLAAKRIQDLAQSYGS 463
P V + D L + A +R+ ++A G
Sbjct: 166 IGPDVFGIDCGPGDRLLISSDGLFAAADEALIVDAATSPDPQV---AVRRLVEVANDAGG 222
Query: 464 EDNLSVLVLRF 474
DN +V+V+
Sbjct: 223 SDNTTVVVIDL 233
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 30.7 bits (69), Expect = 1.3
Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 57/191 (29%)
Query: 300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRY 359
+ + F S + G S + ++ + + Y + DSL+
Sbjct: 91 KELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMNQYEISQQFENVLQKLDSLNNA 150
Query: 360 SLS---ATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS-------LTFTHAPTLS-- 407
A L + HR L++ ++G +A+LC+ L+ H +
Sbjct: 151 LSVGSSAVLALI------HRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEE 204
Query: 408 -------------------------------------PPVPPQGSCPLSFPDPHVTEVM- 429
+ + P+ +P + +
Sbjct: 205 AARLFRLGLMAQNFEGVPLYSTRCIGNYLGKAGYKDCNFLSSATAEPVI-FEPEIVGGIQ 263
Query: 430 LHENDHFLILA 440
+ FL+L
Sbjct: 264 ITPACRFLVLM 274
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 29.2 bits (66), Expect = 2.4
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 180 ESLPDWIDTCPELETI-FASHNRITQLPSQFFCRELGK---LHTLQLSFNRLTSLPSLIR 235
E+L + P+LE + + I + L + + R +
Sbjct: 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--DPVAF 83
Query: 236 QIA-------SLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKNC 273
+A +LK L ++SN I L + N+S L L I
Sbjct: 84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTS-LIELRIDNQS 132
Score = 28.0 bits (63), Expect = 5.8
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 84 LTSVNLRSNQL--KGTIILGNY----GNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
+ ++ + L L +L+V N I G L +E+++ + + L
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS--GSGILALVEALQSNTS-L 123
Query: 138 KTLVLNGSS----------LISVIAGNNKLQSL 160
L ++ S + +++ N L
Sbjct: 124 IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156
>3uhf_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich
fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni}
PDB: 3uho_A* 3uhp_A
Length = 274
Score = 27.9 bits (63), Expect = 8.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 297 FCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTV 333
F ++ IG+FDSG G ++++S+ L + +
Sbjct: 20 FQSNAMKIGVFDSGVGG---LSVLKSLYEARLFDEII 53
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Length = 276
Score = 27.9 bits (63), Expect = 8.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 298 CNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTV 333
C+ ++IG+ DSG G T+ I R L +E
Sbjct: 4 CHKHSVIGVLDSGVGG---LTVASEIIRQLPKESIC 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,037,087
Number of extensions: 463984
Number of successful extensions: 4972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1593
Number of HSP's successfully gapped: 658
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)