RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12423
(567 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 72.7 bits (177), Expect = 2e-14
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 10/185 (5%)
Query: 91 SNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGSSL 147
+NQ+ LG NL L ++ N ++ + L +L L + + NQ+ L + + L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 265
Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
+ G N++ ++ L +L+++ N+LE I L + N I+ +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP 324
Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVL 267
L KL L + N+++ + SL + ++ +L N I+ L L N +++ L
Sbjct: 325 ---VSSLTKLQRLFFANNKVSDVSSL-ANLTNINWLSAGHNQISDLTP--LANLTRITQL 378
Query: 268 NISKN 272
++
Sbjct: 379 GLNDQ 383
Score = 59.6 bits (143), Expect = 4e-10
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 29/167 (17%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-- 140
L ++L NQLK L + NLT LD++ N I +L L L +L +K NQ+ +
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280
Query: 141 ----------------------VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
+ N +L + N + + +LQ L + N+
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
+ + + + + A HN+I+ L L ++ L L+
Sbjct: 341 VSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383
Score = 56.9 bits (136), Expect = 3e-09
Identities = 58/323 (17%), Positives = 120/323 (37%), Gaps = 39/323 (12%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVF------LRHPMSPLNNVIEH 54
+ + DR + G + L ++ + N+++ + + M+
Sbjct: 46 VTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 104
Query: 55 GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN 114
+A + I + + L + L SN + L +L L
Sbjct: 105 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 164
Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGS--SLISVIAGNNKLQSLIVSPRPARLQHL 172
+ L L LE + S N++ + + +L S+IA NN++ + L L
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 224
Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
++ N+L+ + + + L + ++N+I+ L L KL L+L N+++++
Sbjct: 225 SLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 280
Query: 233 LI---------------------RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
L + +L YL L N+I+ + + + +KL+ L +
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN 338
Query: 272 NCLKMLPSLQKGFYLLNISQLRL 294
N + + SL L NI+ L
Sbjct: 339 NKVSDVSSLAN---LTNINWLSA 358
Score = 51.9 bits (123), Expect = 9e-08
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 32/186 (17%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVF--------LRHPMSPLNNVI 52
L E ++ N L + S L L A N+IS+L L+ + ++N+
Sbjct: 221 LDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279
Query: 53 EHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVS 112
+ + LT + L N + + + L L +
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPVSSLTKLQRLFFA 337
Query: 113 ENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQH 171
N + + L L + + NQ+ L L +L R+
Sbjct: 338 NNKVSDVSSLANLTNINWLSAGHNQISDLT--------------PLANL------TRITQ 377
Query: 172 LDISYN 177
L ++
Sbjct: 378 LGLNDQ 383
Score = 48.5 bits (114), Expect = 1e-06
Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 47/265 (17%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
E L + T+ + +TTL I+S+D + LN L I S NQL +
Sbjct: 23 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 82
Query: 142 -LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
L + + I NN + I +N + D + L + S N
Sbjct: 83 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142
Query: 201 RITQLPSQFFCR----------------------------------------ELGKLHTL 220
I+ + + +L L +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202
Query: 221 QLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
+ N+++ + + + +L L L N + + L + + L L+++ N + L L
Sbjct: 203 IATNNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPL 259
Query: 281 QKGFYL--LNISQLRLPGFCNSDAL 303
L L + ++ L
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGL 284
Score = 37.3 bits (85), Expect = 0.004
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
+ + + G + + ++ L ++S+ D ++ L I S+N++T
Sbjct: 22 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD 80
Query: 205 LPSQFFCRELGKLH 218
+ +L +
Sbjct: 81 ITPLKNLTKLVDIL 94
Score = 30.4 bits (67), Expect = 0.69
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQ 208
+ I + + + A + + ++ T+ A I +
Sbjct: 4 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG- 61
Query: 209 FFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
L L + S N+LT + L + + L +
Sbjct: 62 --VEYLNNLTQINFSNNQLTDITPL-KNLTKLVDIL 94
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 60.1 bits (144), Expect = 2e-10
Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 19/196 (9%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
L V L+ + + LD+ N I + G L L TL+L
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNL-------KNLHTLIL 62
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
+ + + G L+ +L+ L +S N+L+ LP+ + + + N I
Sbjct: 63 INNKISKISPGA--FAPLV------KLERLYLSKNQLKELPEKMPKTL--QELRVHENEI 112
Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
T++ F L ++ ++L N L S +K L + + +
Sbjct: 113 TKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171
Query: 263 KLKVLNISKNCLKMLP 278
L L++ N + +
Sbjct: 172 SLTELHLDGNKITKVD 187
Score = 55.0 bits (131), Expect = 7e-09
Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 32/304 (10%)
Query: 7 DRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQ 66
L + P +D P L N+I+ + L N+ + +
Sbjct: 18 SDLGLEKVP--KDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISP 72
Query: 67 DEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNR 126
+V+ L + L NQLK + L L V EN I + N
Sbjct: 73 GAFAPLVK---------LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG 122
Query: 127 LESIKCSRNQLKTLVLNG---------SSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
L + L +G L + + + + I P L L + N
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGN 181
Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
++ + L L L+ N+L +P +
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241
Query: 238 ASLKYLFLQSNSINILPQ------LFLQNSSKLKVLNISKNCLKMLPSLQKGF-YLLNIS 290
++ ++L +N+I+ + + + +++ N ++ F + +
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
Query: 291 QLRL 294
++L
Sbjct: 302 AVQL 305
Score = 44.6 bits (104), Expect = 2e-05
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 189 CP-----ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKY 242
CP L + S + ++P L L N++T + + + +L
Sbjct: 4 CPFRCQCHLRVVQCSDLGLEKVPKDLPPD----TALLDLQNNKITEIKDGDFKNLKNLHT 59
Query: 243 LFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS-LQKGFYLLNISQLRLPGFCNS 300
L L +N I+ + KL+ L +SKN LK LP + K L + + + S
Sbjct: 60 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 59.1 bits (141), Expect = 5e-10
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
D P LE + S+N++ +LP+ +L L SFN L +P L + +LK L
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPELPQ---NLKQLH 330
Query: 245 LQSNSINILPQLFLQNSSKLKVLNIS 270
++ N + P + ++ L ++
Sbjct: 331 VEYNPLREFPDIP----ESVEDLRMN 352
Score = 56.8 bits (135), Expect = 3e-09
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
I + + + + C L L +S N+L LP+L L+ L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLI 310
Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
N + +P+L LK L++ N L+ P + ++ LR+
Sbjct: 311 ASFNHLAEVPELP----QNLKQLHVEYNPLREFPDI-----PESVEDLRM 351
Score = 50.6 bits (119), Expect = 3e-07
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
LE + S N+L L L +IA N L + P L+ L + YN L P
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV--PELPQNLKQLHVEYNPLREFP 340
Query: 184 DWIDTCPEL 192
D ++ +L
Sbjct: 341 DIPESVEDL 349
Score = 47.9 bits (112), Expect = 2e-06
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
L+++ L SLP+ P LE++ AS N +T+LP L +L + N L
Sbjct: 40 AHELELNNLGLSSLPELP---PHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLK 91
Query: 229 SLPSL 233
+L L
Sbjct: 92 ALSDL 96
Score = 43.3 bits (100), Expect = 5e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF 257
++ ++ LP L +L S N LT LP L + SLK L + +N++ L L
Sbjct: 46 NNLGLSSLPE-----LPPHLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDLP 97
Score = 41.7 bits (96), Expect = 2e-04
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
L +N+ +N+L + L L S N + + L+ + N L+
Sbjct: 286 LEELNVSNNKL--IELPALPPRLERLIASFNHLAEVP-ELPQNLKQLHVEYNPLREF 339
Score = 41.3 bits (95), Expect = 2e-04
Identities = 62/307 (20%), Positives = 105/307 (34%), Gaps = 17/307 (5%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSP-LNNVIEHGIAEE 59
E ++ L+ P + P L+ L A+ N ++ LP + S ++N +++
Sbjct: 40 AHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96
Query: 60 REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
+E+ + N + + E
Sbjct: 97 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156
Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
+L L L +I N LK L SL S++AGNN L+ L L + N L
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216
Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL--------- 230
++LPD + L + +LP ++ + LS
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276
Query: 231 PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290
SL SL+ L + +N + LP L +L+ L S N L +P L + L++
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQNLKQLHVE 332
Query: 291 QLRLPGF 297
L F
Sbjct: 333 YNPLREF 339
Score = 39.8 bits (91), Expect = 6e-04
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
A++RL C Q L LN N L SL P L+ L S N L L
Sbjct: 28 AVSRLR--DCLDRQAHELELN----------NLGLSSL--PELPPHLESLVASCNSLTEL 73
Query: 183 PDWIDTCPELETIFASHNRITQLP 206
P+ L+++ +N + L
Sbjct: 74 PELP---QSLKSLLVDNNNLKALS 94
Score = 39.0 bits (89), Expect = 0.001
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 59 EREEDFEQDEDGIIVERREPE-VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
ER E + R + + + + L + L + + +L +L S NS+
Sbjct: 14 ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL--SSLPELPPHLESLVASCNSLT 71
Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
L L+S+ N LK L L
Sbjct: 72 ELP-ELPQSLKSLLVDNNNLKALSDLPPLL 100
Score = 38.7 bits (88), Expect = 0.002
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 27/97 (27%)
Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
+ H L+L+ L+SLP L L+ L S N L
Sbjct: 39 QAHELELNNLGLSSLPELPPH---------------------------LESLVASCNSLT 71
Query: 276 MLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDN 312
LP L + L + L + L+ +N
Sbjct: 72 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 108
Score = 29.8 bits (65), Expect = 0.98
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLR 42
L+ N L E P + LK L N + P
Sbjct: 306 LERLIASFNHLAEVP---ELPQNLKQLHVEYNPLREFPDIPE 344
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 56.6 bits (135), Expect = 1e-09
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 24/209 (11%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
+ + + T+ + +TTL + +++ + LN L ++ NQ+ L
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE-----------------LESLPD 184
+ + VS + L +
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELG---KLHTLQLSFNRLTSLPSLIRQIASLK 241
I L + L KL TL+ N+++ + L + +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-ASLPNLI 198
Query: 242 YLFLQSNSINILPQLFLQNSSKLKVLNIS 270
+ L++N I+ + L N+S L ++ ++
Sbjct: 199 EVHLKNNQISDVS--PLANTSNLFIVTLT 225
Score = 30.4 bits (67), Expect = 0.43
Identities = 24/184 (13%), Positives = 56/184 (30%), Gaps = 10/184 (5%)
Query: 1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
+ +T G Q L L N+I+ L + + +
Sbjct: 43 ITTLSAFGTGVTTIEGVQ-YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101
Query: 61 EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENS----- 115
Q + + + L ++ + N L L +
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 116 --IESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQH 171
+ L L++L ++K N++ + + + +LI V NN++ + + L
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Query: 172 LDIS 175
+ ++
Sbjct: 222 VTLT 225
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 235
Score = 51.8 bits (123), Expect = 5e-08
Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 42/217 (19%)
Query: 297 FCNSDALIGIFD---SGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIK 353
L+ + D G++AS LV + L ++ + + + + + I
Sbjct: 22 VYAGARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAK-LDAAVRAGNSAIA 80
Query: 354 DSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQ 413
+ + + L + +G+++ L R T T + +
Sbjct: 81 AQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDE 140
Query: 414 G------------------SCPLSFPDPHVTEVMLHENDHFL-----------------I 438
G + +P +T D +L
Sbjct: 141 GRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDETILEA 200
Query: 439 LANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475
L V+E +A R+ +LA G DN++V+V +
Sbjct: 201 LQIPEVAE---SAHRLIELALRGGGPDNVTVVVADLE 234
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 49.7 bits (117), Expect = 3e-07
Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 9/199 (4%)
Query: 81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQ- 136
VN L + + T L +SEN + + L RL + R +
Sbjct: 9 VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 137 ---LKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELE 193
L + + + L+ PA + EL+
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL 253
++ N + LP + N L+ + +L L LQ NS+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 254 PQLFLQNSSKLKVLNISKN 272
P+ F + L + N
Sbjct: 188 PKGFFGSHL-LPFAFLHGN 205
Score = 44.3 bits (103), Expect = 2e-05
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
++ + LT+LP + L L N + L ++L LN+
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 271 KNCLKM 276
+ L
Sbjct: 64 RAELTK 69
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 47.0 bits (111), Expect = 3e-07
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
+ L +++ +L L ++ + + SHNR+ LP L L LQ S N L +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALEN 57
Query: 230 LPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKMLPSL 280
+ + + L+ L L +N + + L + +L +LN+ N L +
Sbjct: 58 VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 46.6 bits (110), Expect = 6e-07
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 108 TLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP 166
L ++ + L L L + + S N+L+ L ++L
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC----------------- 44
Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
L+ L S N LE++ + + + +NR+ Q + +L L L N
Sbjct: 45 --LEVLQASDNALENVDGVANLPRL-QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101
Query: 227 LTSLPSLIRQIASL 240
L + ++A +
Sbjct: 102 LCQEEGIQERLAEM 115
Score = 40.9 bits (95), Expect = 5e-05
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 88 NLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTL--VLN 143
+L L L +T LD+S N + +L L AL LE ++ S N L+ + V N
Sbjct: 4 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63
Query: 144 GSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNELESLPDWID----TCPELETIF 196
L ++ NN+LQ RL L++ N L + P + +I
Sbjct: 64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
Score = 27.8 bits (61), Expect = 2.0
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 24/142 (16%)
Query: 8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
DLT + + + L + NR+ LP L +
Sbjct: 7 HKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCL------------EVLQASDN 53
Query: 68 EDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRL 127
+ EL L +N+L+ + + + L L+L N L
Sbjct: 54 ALENVDGVANLPRLQEL---LLCNNRLQQSAAIQPLVSCPRL-------VLLNLQG-NSL 102
Query: 128 ESIKCSRNQLKTLVLNGSSLIS 149
+ + +L ++ + SS+++
Sbjct: 103 CQEEGIQERLAEMLPSVSSILT 124
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 48.1 bits (113), Expect = 7e-07
Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 8/190 (4%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLK-TL 140
E NL+ + + ++ + + + I+S+ + L + + + N+L
Sbjct: 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
L + + + + S + + + S + + P+LE+++ +N
Sbjct: 85 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
+IT + +L L + + L L L+ L+L N I+ L L
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGL----TKLQNLYLSKNHISDLRA--LAG 198
Query: 261 SSKLKVLNIS 270
L VL +
Sbjct: 199 LKNLDVLELF 208
Score = 41.1 bits (95), Expect = 1e-04
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 4/165 (2%)
Query: 84 LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES-LDLGALNRLESIKCSRNQLKTLVL 142
+ + ++ +K + N+T L ++ N + L L L + N++K L
Sbjct: 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
++ Q + + + + + +
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167
Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
L KL L LS N ++ L +L + +L L L S
Sbjct: 168 ISDIVPL--AGLTKLQNLYLSKNHISDLRAL-AGLKNLDVLELFS 209
Score = 30.7 bits (68), Expect = 0.34
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
+ L +T + ++ S+ + ++ I + + Q + L ++ N
Sbjct: 23 FAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNK 79
Query: 274 L 274
L
Sbjct: 80 L 80
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 47.4 bits (111), Expect = 9e-07
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 8/187 (4%)
Query: 83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLK-TL 140
E L + T+ + +TTL I+S+D + LN L I S NQL
Sbjct: 19 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 78
Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
L + + I NN + I +N + D + L + S N
Sbjct: 79 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138
Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
I+ + + L +L+ L L +L +L+ L + SN ++ + L
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDLKPLANL----TTLERLDISSNKVSDIS--VLAK 192
Query: 261 SSKLKVL 267
+ L+ L
Sbjct: 193 LTNLESL 199
Score = 30.4 bits (67), Expect = 0.46
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
+ + + G + + ++ L ++S+ D ++ L I S+N
Sbjct: 18 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN 72
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 48.8 bits (114), Expect = 1e-06
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-----SLPSLIRQIASLKYLFL 245
+++++ ++ L + ++L LT + S +R +L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 246 QSNSIN-----ILPQLFLQNSSKLKVLNISKNCLKM 276
+SN + + Q S K++ L++ CL
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
Score = 40.3 bits (92), Expect = 5e-04
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 84 LTSVNLRSNQLKGTII------LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
L + L + + L +L LD+S N + D G L +ES++ L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCLL 428
Query: 138 KTLVLNGSSL 147
+ LVL
Sbjct: 429 EQLVLYDIYW 438
Score = 39.2 bits (89), Expect = 0.001
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 169 LQHLDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCREL----GKLHT 219
L+ L ++ ++ SL + L + S+N + + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 220 LQLSFNRLT-----SLPSLIRQIASLKYL 243
L L + L +L + SL+ +
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 38.0 bits (86), Expect = 0.002
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 26/108 (24%)
Query: 183 PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ---LSFNRLTSLPSLIRQIAS 239
L ++ + ++ L H+L+ LS N L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG----------- 410
Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL-----KMLPSLQK 282
I L + Q L+ L + L +L+K
Sbjct: 411 -------DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451
Score = 37.3 bits (84), Expect = 0.005
Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 37/123 (30%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
++ +LD+ + + + ++ + Q +
Sbjct: 3 DIQSLDIQCEEL--------------------------SDARWAELLPLLQQCQVV---- 32
Query: 165 RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG----KLHTL 220
RL ++ + + + P L + N + + + L K+ L
Sbjct: 33 ---RLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89
Query: 221 QLS 223
L
Sbjct: 90 SLQ 92
Score = 36.9 bits (83), Expect = 0.006
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 84 LTSVNLRSNQLKGTII------LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
V L L L L L++ N + D+G L+ ++ ++
Sbjct: 29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKI 86
Query: 138 KTLVLNG 144
+ L L
Sbjct: 87 QKLSLQN 93
Score = 36.5 bits (82), Expect = 0.008
Identities = 11/98 (11%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 83 ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
++ S++++ +L +L + + + + + +++ + L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPA-LAE 59
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
L L + L G + + + +P ++Q L +
Sbjct: 60 LNLRSNELGD--VGVHCVLQGLQTPSC-KIQKLSLQNC 94
Score = 32.6 bits (72), Expect = 0.12
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI 161
L L +++ + +L ++ + + L+ L L+ + L AG +L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSL--AATLLANHS-LRELDLSNNCLGD--AGILQLVESV 421
Query: 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
P L+ L + + L+ + + +
Sbjct: 422 RQPGC-LLEQLVLYDIYWSE-----EMEDRLQALEKDKPSLRVI 459
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
2C, catalytic domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 295
Score = 46.1 bits (108), Expect = 5e-06
Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 67/255 (26%)
Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGD-IASTLVQSIPRILLEERTVKETASDYMKY---- 343
+ + LP S + ++D G G +A + + + + K +A
Sbjct: 40 TAVIGLPSGLESWSFFAVYD-GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKN 98
Query: 344 ---------------------------TMLTAHREIKDSLHRYSLSATLCHLSLHPVTHR 376
+ + + + L + H
Sbjct: 99 GIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHF 158
Query: 377 Y--MLHIASVGEAKAILC--------RQAGSLTFTHA---PTLSPPVPPQGSCPLSFPDP 423
+ ++ E + I R GSL + A + L P+P
Sbjct: 159 FTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEP 218
Query: 424 HVTEVML-HENDHFLILANKSVSE--------------------PVLAAKRIQDLAQSYG 462
V ++ E+D F+ILA + + + D G
Sbjct: 219 EVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKG 278
Query: 463 SEDNLSVLVLRFQGS 477
S DN+SV+++ F +
Sbjct: 279 SRDNMSVILICFPNA 293
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 45.6 bits (106), Expect = 7e-06
Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 16/190 (8%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
+ + L+ + +G + + N I + + ++
Sbjct: 14 VTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN----VL 68
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
+ + + L + A+L+ +D P L T+ + +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVD---------PATFHGLGRLHTLHLDRCGLQE 119
Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
L F L L L N L +L R + +L +LFL N I+ +P+ +
Sbjct: 120 LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 264 LKVLNISKNC 273
L L + +N
Sbjct: 179 LDRLLLHQNR 188
Score = 40.9 bits (94), Expect = 2e-04
Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 13/150 (8%)
Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCP 190
C T L +V G PA Q + + N + +P C
Sbjct: 8 CYNEPKVTTSCPQQGLQAVPVG-----------IPAASQRIFLHGNRISHVPAASFRACR 56
Query: 191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNS 249
L ++ N + ++ + F +L S+ P+ + L L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPS 279
+ L + + L+ L + N L+ LP
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPD 146
Score = 32.9 bits (73), Expect = 0.077
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 12/152 (7%)
Query: 84 LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSR---NQLK 138
L + L+ N L+ + GNLT L + N I S+ A L S+ N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 139 TLV------LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPEL 192
+ L + + A N LQ+L ++ N L
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250
Query: 193 ETIFASHNRIT-QLPSQFFCRELGKLHTLQLS 223
+ S + + LP + R+L +L L
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 43.0 bits (100), Expect = 2e-05
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
R + LD+ ++ + + T + + I S N I +L L +L TL ++ N
Sbjct: 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNN 73
Query: 226 RLTS-LPSLIRQIASLKYLFLQSNSINILPQL------------FLQNSSKLKVLNISKN 272
R+ L + + L L L +NS+ L L + + +
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 273 CLKMLPSLQK 282
+ +P ++
Sbjct: 134 VIYKVPQVRV 143
Score = 37.2 bits (85), Expect = 0.002
Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 23/162 (14%)
Query: 87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
V L + ++ N LD+ I +E++ + +Q + +
Sbjct: 1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPV--------IENLGATLDQFDAIDFS--- 49
Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-LPDWIDTCPELETIFASHNRITQL 205
+N+++ L P RL+ L ++ N + P+L + ++N + +L
Sbjct: 50 -------DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 102
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLP----SLIRQIASLKYL 243
L L L + N +T+ +I ++ ++ L
Sbjct: 103 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 41.0 bits (94), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
L + I+ LP L+N KL+ + LK LP+L+
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPTLE 242
Score = 39.5 bits (90), Expect = 5e-04
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ-LSFNRLTSLPSL 233
D + S RI LPS L L+ S L LP+L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGL----ENLKKLRARSTYNLKKLPTL 241
Score = 36.8 bits (83), Expect = 0.004
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 168 RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
LDIS + SLP + + +L S + +LP+
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPT 240
Score = 36.4 bits (82), Expect = 0.006
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 99 ILGNYGNLTTLDVSENSIESLDLGALNRLESIKC-SRNQLKTL 140
+ LD+S I SL L L+ ++ S LK L
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238
Score = 35.7 bits (80), Expect = 0.011
Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 19/229 (8%)
Query: 85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIK-----------CS 133
+ +++ I N L + + GA + ++
Sbjct: 11 RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Query: 134 RNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELE 193
+ + + + A N + LQ+L IS ++ LPD +
Sbjct: 70 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129
Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI- 252
+ + I + ++ L N+ + L + N
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189
Query: 253 --LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN 299
LP +S +L+IS+ + LPS L N+ +LR N
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARSTYN 234
Score = 34.9 bits (78), Expect = 0.019
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 183 PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
I C +++T++PS L+ +L +
Sbjct: 2 HHRICHC-SNRVFLCQESKVTEIPSDLPRN----AIELRFVLTKLRVIQK 46
Score = 28.7 bits (62), Expect = 1.9
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW 185
S + +K+ I S P L +L +
Sbjct: 9 SNRVFLCQESKVTE-IPSDLPRNAIELRFVLTKLRVIQKG 47
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 40.5 bits (93), Expect = 3e-04
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 23/117 (19%)
Query: 107 TTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP 166
TLD++ ++ G L + S + Q L P
Sbjct: 3 QTLDLTGKNLHPDVTGRL--------LSQGVIAFRCPRSFMD---------QPLAEHFSP 45
Query: 167 ARLQHLDISYNEL--ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
R+QH+D+S + + +L + C +L+ + R++ L K L
Sbjct: 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLV 98
Score = 33.5 bits (75), Expect = 0.052
Identities = 32/259 (12%), Positives = 84/259 (32%), Gaps = 20/259 (7%)
Query: 78 PEVKGELTSVNLRSNQLKGTII------LGNYGNLTTLDVSENSIESLDL----GALNRL 127
P+V G L S + + + + + + + +D+S + IE L ++L
Sbjct: 14 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73
Query: 128 ESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS-YNELESLPDWI 186
+++ +L +++ +A N+ L L +S + + + L +
Sbjct: 74 QNLSLEGLRL------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127
Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQ 246
+ T + + L + + R +
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN---LQKSDLSTLVRRCPNLVHLDLSD 184
Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGI 306
S + + L+ L++S+ + +L + + + L++ G L +
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244
Query: 307 FDSGDNGDIASTLVQSIPR 325
++ + I + +I R
Sbjct: 245 KEALPHLQINCSHFTTIAR 263
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 39.7 bits (91), Expect = 7e-04
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 185 WIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243
+ L + +NRI LP +L LH+L +SFN L +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 244 FLQSN 248
+N
Sbjct: 297 AYANN 301
Score = 36.7 bits (83), Expect = 0.006
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 85 TSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTL 140
++LR+N++ GT+ L L +L+VS N++ G L R + + N+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC--- 303
Query: 141 VLNGSSL 147
L GS L
Sbjct: 304 -LCGSPL 309
Score = 35.9 bits (81), Expect = 0.011
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 154 NNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRE 213
N+L I + + + T + +
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 214 LGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISK 271
L+ L L NR+ +LP + Q+ L L + N++ +PQ N + V +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYAN 300
Query: 272 N---CLKMLPS 279
N C LP+
Sbjct: 301 NKCLCGSPLPA 311
Score = 30.5 bits (67), Expect = 0.54
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 84 LTSVNLRSNQLKGTI-ILGNYGNLTTLDVSEN 114
L S+N+ N L G I GN + N
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 38.7 bits (88), Expect = 0.002
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFN 225
L+ I+ + +S+ + ++ I S N I +++ + L + S
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 226 RLTSLPSLI 234
+ I
Sbjct: 70 FTGRVKDEI 78
Score = 36.8 bits (83), Expect = 0.005
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP----QLFLQNSSKLKVLNISK 271
L ++ S+ +++ + S+K + L N+I + + L++ S
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 272 NCLKMLPS 279
+
Sbjct: 69 IFTGRVKD 76
Score = 34.1 bits (76), Expect = 0.038
Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 27/119 (22%)
Query: 183 PDWIDTCPELETIFASHNRIT-----QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
+ + P L + + ++ + F E L TL+L +N +
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-------- 287
Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK----MLPSLQKGFYLLNISQL 292
+++ L + + L L ++ N ++ +++ F +L
Sbjct: 288 ----------DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336
Score = 33.3 bits (74), Expect = 0.070
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
L TL + N IE + L I L L LNG+ ++++ + +
Sbjct: 274 GLQTLRLQYNEIELDAVRTL--KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331
Query: 165 RPARLQHLD 173
L LD
Sbjct: 332 GRGELDELD 340
Score = 31.8 bits (70), Expect = 0.19
Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 103 YGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIV 162
L + + +++ L++++ N+++ + +L +VI
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--RTLKTVIDEKMP------ 302
Query: 163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
L L+++ N D +D E+ + + +L
Sbjct: 303 -----DLLFLELNGNRFSEEDDVVDEIREVFST-RGRGELDEL 339
Score = 30.6 bits (67), Expect = 0.44
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 84 LTSVNLRSNQLKG-------TIILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSR 134
L ++ L+ N+++ T+I +L L+++ N D + + + S R
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS-TRGR 333
Query: 135 NQLKTL 140
+L L
Sbjct: 334 GELDEL 339
Score = 26.8 bits (57), Expect = 8.1
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
SLK + + + + L++ S +K + +S N + + + + L
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLE 62
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.6 bits (70), Expect = 0.18
Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 29/187 (15%)
Query: 74 ERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESLD-LGALNRLES 129
E R+ V E V L + L L +S N+IE + L + L
Sbjct: 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTC 189
+ RN ++ + A + I+
Sbjct: 75 LSLGRNL--------------------IKKIENLDAVADTLEELWISYNQIASLSGIEKL 114
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
L ++ S+N+IT L KL L L+ N L + + + ++
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR-- 172
Query: 250 INILPQL 256
LP L
Sbjct: 173 ---LPNL 176
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 29.0 bits (63), Expect = 0.86
Identities = 18/131 (13%), Positives = 35/131 (26%)
Query: 165 RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
P L + + + L ++ + + Q R LG+L L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGF 284
+ L + S + L+ L +S N L +L+
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 285 YLLNISQLRLP 295
+P
Sbjct: 126 RWEEEGLGGVP 136
>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 27.6 bits (61), Expect = 3.7
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 453 RIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRKLGVQDPECPWTIEYDRSS- 511
+ DLA S+ L + F R K L DP+ T+ SS
Sbjct: 13 KAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSI 72
Query: 512 -PSG 514
P G
Sbjct: 73 KPDG 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,924,998
Number of extensions: 86272
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 96
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)