Query psy12424
Match_columns 324
No_of_seqs 147 out of 1248
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:57:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14105 selenophosphate synth 100.0 1.5E-52 3.3E-57 395.1 32.8 291 8-320 43-345 (345)
2 COG0611 ThiL Thiamine monophos 100.0 1.4E-51 3.1E-56 376.0 24.5 279 7-320 21-308 (317)
3 PRK00943 selenophosphate synth 100.0 2.1E-50 4.6E-55 380.3 29.6 278 4-307 37-339 (347)
4 TIGR00476 selD selenium donor 100.0 1.1E-49 2.3E-54 376.1 28.7 277 11-302 49-346 (347)
5 KOG3939|consensus 100.0 2E-48 4.2E-53 333.7 21.8 302 14-322 2-310 (312)
6 cd02195 SelD Selenophosphate s 100.0 1.6E-47 3.5E-52 352.4 27.2 248 8-302 37-287 (287)
7 PRK05731 thiamine monophosphat 100.0 1.5E-47 3.2E-52 357.8 25.1 280 6-320 19-310 (318)
8 TIGR01379 thiL thiamine-monoph 100.0 3.9E-47 8.5E-52 354.8 26.0 282 8-319 20-307 (317)
9 TIGR02124 hypE hydrogenase exp 100.0 5.9E-47 1.3E-51 353.9 26.9 268 6-312 15-299 (320)
10 cd02197 HypE HypE (Hydrogenase 100.0 1.6E-46 3.5E-51 347.0 24.4 261 6-302 20-293 (293)
11 cd02194 ThiL ThiL (Thiamine-mo 100.0 2.3E-46 4.9E-51 345.8 23.7 263 8-303 20-291 (291)
12 cd06061 PurM-like1 AIR synthas 100.0 4.2E-46 9.1E-51 345.1 22.2 261 11-302 31-298 (298)
13 cd02691 PurM-like2 AIR synthas 100.0 5.9E-44 1.3E-48 335.2 28.0 268 5-313 29-313 (346)
14 TIGR03267 methan_mark_2 putati 100.0 4.7E-44 1E-48 334.3 23.8 265 8-318 40-311 (323)
15 TIGR00878 purM phosphoribosyla 100.0 2.2E-43 4.9E-48 330.9 27.8 277 9-305 34-332 (332)
16 PRK05385 phosphoribosylaminoim 100.0 2.9E-43 6.3E-48 329.8 27.1 270 9-302 34-327 (327)
17 cd02196 PurM PurM (Aminoimidaz 100.0 3E-43 6.5E-48 325.7 25.9 278 10-303 2-297 (297)
18 COG0309 HypE Hydrogenase matur 100.0 2.9E-43 6.4E-48 319.1 18.2 274 7-313 33-319 (339)
19 cd02192 PurM-like3 AIR synthas 100.0 5.4E-42 1.2E-46 314.6 19.2 247 8-301 31-283 (283)
20 PLN02557 phosphoribosylformylg 100.0 4.3E-41 9.3E-46 316.0 25.0 277 10-310 84-377 (379)
21 cd00396 PurM-like AIR (aminoim 100.0 5.8E-39 1.3E-43 285.2 21.5 212 31-301 2-222 (222)
22 cd02204 PurL_repeat2 PurL subu 100.0 5.5E-39 1.2E-43 292.6 19.4 251 14-302 1-264 (264)
23 cd02203 PurL_repeat1 PurL subu 100.0 1E-38 2.2E-43 297.5 20.0 265 30-318 27-310 (313)
24 PRK14090 phosphoribosylformylg 100.0 1.3E-37 2.8E-42 307.0 25.0 275 7-321 44-331 (601)
25 COG0709 SelD Selenophosphate s 100.0 1.3E-38 2.7E-43 284.1 14.5 268 11-306 48-339 (346)
26 TIGR01736 FGAM_synth_II phosph 100.0 6.3E-37 1.4E-41 314.2 25.3 275 7-318 412-696 (715)
27 PRK01213 phosphoribosylformylg 100.0 4.1E-37 8.8E-42 315.3 23.8 276 7-322 422-709 (724)
28 TIGR01736 FGAM_synth_II phosph 100.0 1E-37 2.3E-42 319.9 18.4 280 9-318 54-345 (715)
29 PRK01213 phosphoribosylformylg 100.0 8.9E-36 1.9E-40 305.4 19.5 278 9-318 66-356 (724)
30 cd02193 PurL Formylglycinamide 100.0 2.2E-35 4.8E-40 269.8 18.1 244 30-301 2-271 (272)
31 COG2144 Selenophosphate synthe 100.0 2.3E-35 5.1E-40 260.0 14.3 253 9-313 40-301 (324)
32 COG0150 PurM Phosphoribosylami 100.0 3.6E-33 7.8E-38 252.6 16.7 279 9-307 37-337 (345)
33 COG0046 PurL Phosphoribosylfor 100.0 1.3E-27 2.8E-32 237.0 24.1 260 10-305 445-718 (743)
34 COG1973 HypE Hydrogenase matur 99.9 8.4E-26 1.8E-30 202.1 16.9 269 12-322 111-398 (449)
35 KOG0237|consensus 99.9 4.2E-26 9.2E-31 216.8 13.4 279 10-306 471-771 (788)
36 COG0046 PurL Phosphoribosylfor 99.9 1.4E-25 3.1E-30 222.5 16.6 282 8-321 79-375 (743)
37 TIGR01739 tegu_FGAM_synt herpe 99.9 9.9E-25 2.1E-29 231.4 23.2 250 29-317 593-863 (1202)
38 PHA03366 FGAM-synthase; Provis 99.9 1.7E-24 3.7E-29 230.4 23.0 250 28-317 688-962 (1304)
39 TIGR01735 FGAM_synt phosphorib 99.9 1.9E-24 4.1E-29 229.8 20.4 281 9-313 254-591 (1310)
40 TIGR01735 FGAM_synt phosphorib 99.9 1.9E-23 4.1E-28 222.2 24.1 268 7-317 683-988 (1310)
41 PRK05297 phosphoribosylformylg 99.9 8.2E-23 1.8E-27 218.0 24.5 268 6-317 662-968 (1290)
42 PLN03206 phosphoribosylformylg 99.9 2.6E-22 5.6E-27 212.4 23.6 265 7-316 679-972 (1307)
43 PRK05297 phosphoribosylformylg 99.9 1.7E-23 3.6E-28 223.3 13.8 279 9-312 250-584 (1290)
44 PF00586 AIRS: AIR synthase re 99.9 4.8E-23 1E-27 159.1 4.9 92 12-113 1-96 (96)
45 TIGR01857 FGAM-synthase phosph 99.9 2.7E-20 5.9E-25 195.7 20.2 228 13-305 677-919 (1239)
46 PRK14090 phosphoribosylformylg 99.8 1.5E-17 3.2E-22 165.0 16.7 181 9-243 381-570 (601)
47 PF02769 AIRS_C: AIR synthase 99.7 9.3E-18 2E-22 140.1 11.3 88 208-307 56-147 (153)
48 TIGR01857 FGAM-synthase phosph 99.7 1.4E-17 3E-22 175.5 13.7 259 28-321 311-596 (1239)
49 PLN03206 phosphoribosylformylg 99.7 3.5E-17 7.6E-22 173.7 11.2 264 28-315 285-587 (1307)
50 KOG1907|consensus 99.1 1.5E-08 3.3E-13 101.7 20.9 235 43-318 724-994 (1320)
51 TIGR01739 tegu_FGAM_synt herpe 98.3 5.8E-06 1.2E-10 89.3 13.5 195 91-314 223-449 (1202)
52 KOG1907|consensus 98.0 3.8E-05 8.2E-10 78.0 9.9 252 31-313 306-607 (1320)
53 PHA03366 FGAM-synthase; Provis 97.3 0.0024 5.3E-08 69.8 12.8 202 87-313 309-537 (1304)
54 PF12818 Tegument_dsDNA: dsDNA 93.3 2.3 5E-05 39.1 12.8 88 63-152 30-130 (282)
55 PF11314 DUF3117: Protein of u 35.2 60 0.0013 21.3 3.1 24 270-293 25-48 (51)
56 PRK08227 autoinducer 2 aldolas 34.5 43 0.00093 30.5 3.3 71 29-110 75-145 (264)
57 PF15569 Imm21: Immunity prote 33.5 51 0.0011 24.8 3.0 22 97-118 20-41 (91)
58 PF03796 DnaB_C: DnaB-like hel 31.4 50 0.0011 29.5 3.3 58 52-110 116-175 (259)
59 COG0490 Putative regulatory, l 31.2 63 0.0014 27.1 3.5 31 121-151 112-146 (162)
60 PF05225 HTH_psq: helix-turn-h 31.1 50 0.0011 21.2 2.3 20 88-107 7-29 (45)
61 PRK12403 putative aminotransfe 29.2 58 0.0013 32.1 3.6 22 92-113 243-264 (460)
62 PF12683 DUF3798: Protein of u 26.9 42 0.00091 30.6 1.9 41 62-110 128-168 (275)
63 PRK12858 tagatose 1,6-diphosph 26.7 92 0.002 29.5 4.2 79 28-110 83-161 (340)
64 PRK09250 fructose-bisphosphate 25.7 73 0.0016 30.2 3.3 71 29-110 126-197 (348)
65 KOG0117|consensus 23.9 4E+02 0.0086 26.3 7.8 72 233-304 81-161 (506)
66 COG1830 FbaB DhnA-type fructos 22.0 1.1E+02 0.0023 28.0 3.5 70 30-110 79-148 (265)
67 COG1254 AcyP Acylphosphatases 21.6 2.2E+02 0.0048 21.4 4.7 56 243-303 17-75 (92)
68 PRK07004 replicative DNA helic 21.6 1.3E+02 0.0028 29.7 4.4 46 64-110 323-369 (460)
69 PRK14450 acylphosphatase; Prov 20.6 2.6E+02 0.0057 20.7 4.9 54 246-303 18-74 (91)
No 1
>PRK14105 selenophosphate synthetase; Provisional
Probab=100.00 E-value=1.5e-52 Score=395.14 Aligned_cols=291 Identities=31% Similarity=0.508 Sum_probs=231.3
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcc-hhhhhHhhhhcCCCCChhHH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVT-DIDALQMIVGISTQLTEDER 86 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~-P~~~~l~~l~~p~~~~~~~~ 86 (324)
.+++|||||+++.+ +..+++|||+|.|.+.+||++||+|+++|+|||+||||+ |.++ +..+++|+.++.
T Consensus 43 ~~g~gDDaAvi~~~------~~~lv~t~D~f~~~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~-~~~l~lP~~~~~--- 112 (345)
T PRK14105 43 KVGLGDDAAVIIKN------GLAIVKTVDVFTPIVDDPYIQGKIAACNSTSDVYAMGLSEIIGV-LVILGIPPELPI--- 112 (345)
T ss_pred ccCCCCceEEEeeC------CeEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHHcCCccHHHH-HhhhcCCCCCCH---
Confidence 46899999999875 368999999999988999999999999999999999997 8887 466899987776
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhh
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKN 166 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~ 166 (324)
++++++++|+.++|++||++|+||||..++++.++++++|..++++++.|++++|||.|++||++|.+... ++..+..
T Consensus 113 -~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~l~~svtg~g~~~~~i~r~ga~~GD~I~vTg~lG~~~~~-~l~~l~~ 190 (345)
T PRK14105 113 -EVAKEMLQGFQDFCRENDTTIIGGHTILNPWPLIGGAVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSAM-ALSRVPE 190 (345)
T ss_pred -HHHHHHHHHHHHHHHHhCCEEEeeeeccCCCCEEEEEEEEEEcccceeeCCCCCCCCEEEEeCCChHHHHH-HHHhcch
Confidence 69999999999999999999999999999988888888888877788999999999999999999986532 2222210
Q ss_pred hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424 167 EEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKK-------YNAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~ 239 (324)
.+.+.. . ++.+...+......+.+.+++.+....++. ..+|+|||||||||+++|+||+++|+++++|+
T Consensus 191 --~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~ 266 (345)
T PRK14105 191 --EFEDLI-D-ITKEEKEYIINKAIELMTTSNRYALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVEIEIS 266 (345)
T ss_pred --hhhhhc-c-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCeEEEE
Confidence 111000 0 333333333333455555665543323322 24899999999999999999999999988775
Q ss_pred ecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEec-CCCcEEEecCC
Q psy12424 240 IHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTP-GDRSVIIKDSP 315 (324)
Q Consensus 240 ~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~-~~~~~~l~~~~ 315 (324)
+||+++.+.++++.++. .+++|++|+|+|+|||++|+++++++++.+++ ++++||+|++ +.+...+..+.
T Consensus 267 --~iPi~~~~~~~~~~~~~----~l~~g~~~~ssGgLl~tv~~e~~~~~~~~l~~~g~~~~~IG~V~~~g~~~~~~~~~~ 340 (345)
T PRK14105 267 --TLPVIKGTPELSSLFGH----ALLDGYGAETAGGLLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAKLSENV 340 (345)
T ss_pred --ccCCchhHHHHHHHhcc----cccCCCCCcccCeEEEEecHHHHHHHHHHHHhCCCCceEEEEEEeCCCceEEEcCCC
Confidence 89999999998886542 35689999999999999999999999999887 7999999976 54455566677
Q ss_pred ceEee
Q psy12424 316 DIFHV 320 (324)
Q Consensus 316 ~~~~~ 320 (324)
+.+||
T Consensus 341 ~~~~~ 345 (345)
T PRK14105 341 KILEI 345 (345)
T ss_pred ceeeC
Confidence 77765
No 2
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-51 Score=376.01 Aligned_cols=279 Identities=21% Similarity=0.274 Sum_probs=230.2
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCC------CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFF------YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ 80 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~------~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~ 80 (324)
+..++|||||+++.++ +..|++|||++ ++.+ +|+++||+++++|+|||+||||+|.+++ .++++|++
T Consensus 21 ~~~~~GDDaA~v~~~~-----~~~lvvttD~lv~~~hF~~~~-~p~d~G~Ka~a~NlSDlAAMGa~P~~~~-lsl~lP~~ 93 (317)
T COG0611 21 VVLGIGDDAALVDAPE-----GQRLVVTTDMLVEGTHFPPDM-TPEDLGWKALAVNLSDLAAMGARPKAFL-LSLGLPPD 93 (317)
T ss_pred ccccCCCceEEEecCC-----CceEEEEecccccccccCCCC-CHHHHHHHHHHHHHHHHHHcCCCchhhe-eeeeCCCC
Confidence 5679999999999987 46899999984 3343 5999999999999999999999999985 55899988
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHH
Q psy12424 81 LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTI 160 (324)
Q Consensus 81 ~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~ 160 (324)
++. ++++++++||.++|++|+++++||||+.+ ..++++|++|.+++.+.+.|+++||||.|++||.+|.+.+ +
T Consensus 94 ~d~----~~~~~~~~Gi~e~~~~y~~~lIGGDt~~~-~l~is~t~iG~~~~~~~l~R~gAkpGD~v~vtG~lG~saa--g 166 (317)
T COG0611 94 LDE----EWLEALADGIFEAAKKYGVKLIGGDTNRG-PLSISVTAIGVLPKGRALLRSGAKPGDLVAVTGTLGRSAA--G 166 (317)
T ss_pred CCH----HHHHHHHHHHHHHHHHcCCeEeccccCCC-ceEEEEEEEEecCCCchhhccCCCCCCEEEEcCCCchhHH--H
Confidence 887 69999999999999999999999999999 7899999999999988999999999999999999999876 5
Q ss_pred HHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEE
Q psy12424 161 RSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATIN--KKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNF 238 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i 238 (324)
+..+++. ..++.. ...++.+.+|. ......++. .++||+|+|| ||+.+|++|+++|++|++|
T Consensus 167 l~ll~~~----------~~~~~~----~~l~~r~~~P~Prv~~g~~l~~-~a~aa~DiSD-GL~~dL~~i~~aS~vg~~I 230 (317)
T COG0611 167 LELLLNV----------LGPEDE----EELIERHLRPTPRVELGLALAK-LASAAMDISD-GLAADLGHIARASGVGIVI 230 (317)
T ss_pred HHHHhcc----------cCcchh----HHHHHHhcCCCCChhHHHHHHH-HHHHheecch-hHHHHHHHHHHHcCCeEEE
Confidence 5544320 111111 11122233332 233455555 5889999999 9999999999999999999
Q ss_pred EecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-ccceEEEEecCCCcEEEecCCce
Q psy12424 239 MIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-LAWIIGKVTPGDRSVIIKDSPDI 317 (324)
Q Consensus 239 ~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-~~~~IG~V~~~~~~~~l~~~~~~ 317 (324)
+.+.+|+.+.+.+.+...+..++++|++|+||| |+||+|+++.+++...++. .+++||+|+++.+ ..+..+++.
T Consensus 231 ~~~~lp~~~~~~~~~~~~~~~~~~aL~gGEDyE----Lvft~p~~~~~~~~~~~~~~~~~~IG~v~~~~g-~~~~~dgk~ 305 (317)
T COG0611 231 DEDLLPLSDAVLEALDELGDPLEWALSGGEDYE----LVFTVPEENREALLDALRSLGVTIIGRVTEGEG-VVVLVDGKE 305 (317)
T ss_pred EeccCCCcHHHHHHHhccCCHHHHHhccCCceE----EEEEeCchhHHHHHHHHHhcCceEEEEEeecCC-eEEEecCce
Confidence 999999999999888766655777899999999 9999999999999888876 5789999997665 556677777
Q ss_pred Eee
Q psy12424 318 FHV 320 (324)
Q Consensus 318 ~~~ 320 (324)
+++
T Consensus 306 ~~~ 308 (317)
T COG0611 306 LTL 308 (317)
T ss_pred eee
Confidence 544
No 3
>PRK00943 selenophosphate synthetase; Provisional
Probab=100.00 E-value=2.1e-50 Score=380.34 Aligned_cols=278 Identities=27% Similarity=0.324 Sum_probs=221.8
Q ss_pred CCCCCC----CCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC
Q psy12424 4 YSLVRI----EIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST 79 (324)
Q Consensus 4 ~~~~~~----~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~ 79 (324)
+.+|.+ +.|||||++++++ +..+++|+|+|.|.+.+||++||+|+++|+|||+||||+|+++ ++++++|.
T Consensus 37 ~~~~~v~~g~~~gdDaavi~~~~-----~~~lv~t~D~~~p~~~~p~~~G~~Av~~~~sDiaAmGa~P~~~-l~~l~lp~ 110 (347)
T PRK00943 37 FVDPNLLVGNETRDDAAVYDLND-----GTGIISTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGKPIMA-IAILGWPI 110 (347)
T ss_pred CCCCCeeecCCCCCceEEEEeCC-----CcEEEEEcccCCCCCCCHHHHHHHHHHHHhhHhhccCccHHhH-hheeecCc
Confidence 455654 4469999999887 5679999999988889999999999999999999999999987 57789986
Q ss_pred C-CChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHH
Q psy12424 80 Q-LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSV 158 (324)
Q Consensus 80 ~-~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~ 158 (324)
. .++ ++++++++||+++|+++|++++||||..++++.+++|++|.+++++++++++++|||.|++||++|.+...
T Consensus 111 ~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~i~~t~~G~~~~~~~l~~~~ak~GD~Iivtg~iG~~~~~ 186 (347)
T PRK00943 111 NKLPP----EVAREVLEGGRAACRQAGIPLAGGHSIDAPEPIFGLAVTGVVPPERVKRNATAQAGDKLFLTKPLGIGILT 186 (347)
T ss_pred ccCcH----HHHHHHHHHHHHHHHHcCCceecccccCCCCceEEEEEEEEEcCCceeeCCCCCCCCEEEEeCCccHHHHH
Confidence 5 454 68999999999999999999999999999988999999999998889999999999999999999986442
Q ss_pred HHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEE
Q psy12424 159 TIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNF 238 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i 238 (324)
+... ... ++++... .+++.+.+++.....+....++|+|||||+|||+++|+||++.|++|++|
T Consensus 187 --~~~~-----~~~-----~~~~~~~----~~~~~~~~l~~~~~~l~~~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~I 250 (347)
T PRK00943 187 --TAEK-----KSK-----LKPEHYG----LAIEAMCQLNRPGADFAKLPGVHAMTDVTGFGLLGHLLEMCQGAGLTARV 250 (347)
T ss_pred --HHHH-----hcC-----CCHHHHH----HHHHHHHHhhhHHHHHhccCCCeEEEecCCchHHHHHHHHHHhcCCeEEE
Confidence 2111 111 3333222 22333344443333344445699999999999999999999999999999
Q ss_pred EecCCCCChhHHHHhcccCCc----ccccccCC-------------CCccccceEEEEEchhhHHHHHHHHhc---ccce
Q psy12424 239 MIHTLPILYPLGVIASRPGTR----FYQNVNRG-------------HGIETSGGLFICLPEDHAKDFIKEMNG---LAWI 298 (324)
Q Consensus 239 ~~~~iP~~~~~~~~~~~~~~~----~~~~l~~g-------------~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~ 298 (324)
++++||+++.++++|+..... ++..++++ ++++++|+||++|||++++++++.+++ ++++
T Consensus 251 d~d~iPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgGll~~v~~~~a~~v~~~l~~~g~~a~v 330 (347)
T PRK00943 251 DYAAVPLLPGVEEYIAQGCVPGGTGRNFASYGHLIGELPDEQRALLCDPQTSGGLLVAVAPEAEAEVLAIAAEHGIELAA 330 (347)
T ss_pred ecccCCCChhHHHHHHcCCCCchhhhHHHHhhccccccCHHHHhhccCcccCccEEEEeCHHHHHHHHHHHHhcCCCeEE
Confidence 999999999999998753110 01001111 345889999999999999999999987 8999
Q ss_pred EEEEecCCC
Q psy12424 299 IGKVTPGDR 307 (324)
Q Consensus 299 IG~V~~~~~ 307 (324)
||+|++++.
T Consensus 331 IG~V~~~~~ 339 (347)
T PRK00943 331 IGELVEARG 339 (347)
T ss_pred EEEEEcCCC
Confidence 999987543
No 4
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=100.00 E-value=1.1e-49 Score=376.09 Aligned_cols=277 Identities=39% Similarity=0.599 Sum_probs=222.9
Q ss_pred CCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHH
Q psy12424 11 IGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIV 90 (324)
Q Consensus 11 ~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~ 90 (324)
+|||||++++++ +..|++|||+|.|.+.+||++||+|+++|+|||+||||+|+++++..+..|+++++ +++
T Consensus 49 ~gDDaAvi~~~~-----~~~lv~ttD~~~p~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~~~~~~~~~~~~----~~l 119 (347)
T TIGR00476 49 MGDDAVIYLRHN-----GLSLVQTTDYITPIVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILLGVSNKLTI----EVM 119 (347)
T ss_pred CCCCeEEEEecC-----CeEEEEEeccCCCCccCHHHHHHHHHHHHHHhhhhcCchHHHHHhhccCCCCCCCH----HHH
Confidence 899999999876 56899999999888899999999999999999999999999875343444555666 689
Q ss_pred HHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhhhhhh
Q psy12424 91 PMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKL 170 (324)
Q Consensus 91 ~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~~~~~ 170 (324)
+++++||+++|++||++|+||||..+|++.+++|++|.++++++++|++++|||.|++||++|.+.+..+++++.. .
T Consensus 120 ~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~i~~t~~G~~~~~~~i~~~~ak~GD~Iiltg~lG~~~~~~~~~~l~~---~ 196 (347)
T TIGR00476 120 REVIQGFKDACREAGTSLTGGHTILNPWPVFGGAVTGVCPEEEVITPSGAQVGDVLILTKPLGTQVAVAVHKWLDI---P 196 (347)
T ss_pred HHHHHHHHHHHHHcCCCeEeeeeecCCcCEEEEEEEEEECccceecCCCCCCCCEEEEECCccHHHHHHHHHHhhc---c
Confidence 9999999999999999999999999999999999999998888999999999999999999998764445544321 1
Q ss_pred hhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHH
Q psy12424 171 SFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLG 250 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~ 250 (324)
.+.. ++++...+.+.++++.+.++++....++.+.++|+|||||+|||+++|+||+++|++|++|+++++|+++.++
T Consensus 197 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~~~~iPi~~~~~ 273 (347)
T TIGR00476 197 KDLS---ITKEEVELAINEAIENMARLNRKAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVLAKME 273 (347)
T ss_pred cccc---cCcHHHHHHHHHHHHHHhHHHHHHHHHHhhCCceEEEeccCccHHHHHHHHHhcCCCeEEEEeCCCCCchhHH
Confidence 0000 2222222234445556666664333444555799999999999999999999999999999999999999999
Q ss_pred HHhcccCCcccc----cccCC--------------CCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 251 VIASRPGTRFYQ----NVNRG--------------HGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 251 ~~~~~~~~~~~~----~l~~g--------------~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
++++.++..+.+ ..+++ ++.+++|.++++++++.++++++.++. ++++||+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~g~~l~~v~~~~~~~~~~~~~~~~~~~~~ig~v 346 (347)
T TIGR00476 274 ELSKLCGNPFGLMHGTCPEGGGLLSCLPREKAALLCDPIKSGGYLFGVQAEIIGIVEKTATERIIDKPRIGEV 346 (347)
T ss_pred HHHHcCCCChHHHhhhhhccCCcccCCCHHHHHHhcCchhccCcccccCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 999887643311 01111 358899999999999999999998887 78999997
No 5
>KOG3939|consensus
Probab=100.00 E-value=2e-48 Score=333.70 Aligned_cols=302 Identities=48% Similarity=0.859 Sum_probs=276.5
Q ss_pred CeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHH
Q psy12424 14 DSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPML 93 (324)
Q Consensus 14 Daavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i 93 (324)
||+||++.++ +-.||+|||+|.|+++|||.+|+.|.+..+||++|||..-.--|+..++.+.+++.+++...+--+
T Consensus 2 d~~viplrh~----gl~lvqttdffyp~vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~ 77 (312)
T KOG3939|consen 2 DCCVIPLRHG----GLLLVQTTDFFYPLVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLI 77 (312)
T ss_pred CceEEeeccC----CeEEEEeeceeeeccCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhHHH
Confidence 8999999885 778999999999999999999999999999999999999986567888888888888777888889
Q ss_pred HHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhh-hhhhhhh
Q psy12424 94 IEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLK-NEEKLSF 172 (324)
Q Consensus 94 ~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~-~~~~~~~ 172 (324)
++|+++++++.|+++.||.|..+||..+++.+.-++..++++..+.+.|||++++|+|+|.+.+.++++|+. .+++|.+
T Consensus 78 ~~gfkdaa~e~gt~v~ggqtv~npw~~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~qvAv~~h~wi~~~~ek~~~ 157 (312)
T KOG3939|consen 78 IQGFKDAAEEAGTPVTGGQTVINPWCIIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQVAVNAHQWIDNQPEKWNK 157 (312)
T ss_pred HHHhHHHHHhcCCceecCeeecCcceeeccccccccCccceecccCCCCcceEEEeccCCceeehHHHHHHhcCcceeee
Confidence 999999999999999999999999999998888888788899999999999999999999998888999987 5678876
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHH
Q psy12424 173 LKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVI 252 (324)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~ 252 (324)
+... ++.++++++++.+...|.++|+.++.++.+|++|+++|||++||++|..++++..+..+.+.++++|+.....++
T Consensus 158 ~~l~-vs~~die~ay~~a~~~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~~LPiI~km~~v 236 (312)
T KOG3939|consen 158 LKLE-VSDEDIEKAYEEAMKSMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIHKLPIIAKMAEV 236 (312)
T ss_pred eeee-ecHHHHHHHHHHHHhhhhhhchhhhhhhhhccccccccccccchhhhHHHHHHHhhccceeeeccChhhhhHHHH
Confidence 5544 788889999999999999999988999999999999999999999999999999888999999999999988888
Q ss_pred hcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc------ccceEEEEecCCCcEEEecCCceEeecc
Q psy12424 253 ASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG------LAWIIGKVTPGDRSVIIKDSPDIFHVTL 322 (324)
Q Consensus 253 ~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~------~~~~IG~V~~~~~~~~l~~~~~~~~~~~ 322 (324)
++..|+.+. |+.|-..||+||+|++.|.|++.+|++.+++ ++|+||.|++++.-.+++++++.|||+.
T Consensus 237 ska~G~~f~--l~qGts~ETsGGlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekgn~tArIidkp~iIEV~~ 310 (312)
T KOG3939|consen 237 SKACGNMFK--LRQGTSAETSGGLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKGNSTARIIDKPRIIEVAP 310 (312)
T ss_pred HHhccccce--eccCCCccCCCceEEEccHHHHHHHHHHhcCCccCCCceEEEEEEecCCcceEecCCceEEEecC
Confidence 888887666 6678889999999999999999999999987 5999999999988889999999999974
No 6
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=1.6e-47 Score=352.39 Aligned_cols=248 Identities=35% Similarity=0.559 Sum_probs=204.5
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
.+++|||||++++++ ++.|++|||+|++.+.+||++||+++++|+|||+||||+|+++ ++++++|+...+ +.+
T Consensus 37 ~~~~gdDaavi~~~~-----~~~lv~stD~~~~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~~-~~~l~lp~~~~~-~~~ 109 (287)
T cd02195 37 GLGTGDDAAVYRLPG-----GLALVQTTDFFPPIVDDPYLFGRIAAANALSDIYAMGAKPLSA-LAIVTLPRKLPA-LQE 109 (287)
T ss_pred cCCCCCcEEEEEeCC-----CcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHH-HHHhcCCCccch-hhH
Confidence 457899999999865 5789999999999888999999999999999999999999987 688999987632 234
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhhh
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNE 167 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~~ 167 (324)
++++++++||+++|++||++++||||++++++.+++|++|.+++++++.+++++|||.|++|+++|.+.+...+..
T Consensus 110 ~~l~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~i~~t~~G~~~~~~~~~~~~a~~GD~I~ltg~lG~~~~~~~~~~---- 185 (287)
T cd02195 110 EVLREILAGGKDKLREAGAVLVGGHTIEGPEPKYGLSVTGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAEMA---- 185 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeeeccCCCcEEEEEEEEEEcchheecCCCCCCCCEEEEcCCchHHHHHHHHHh----
Confidence 7999999999999999999999999999999999999999998888899999999999999999997544222210
Q ss_pred hhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCCh
Q psy12424 168 EKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILY 247 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~ 247 (324)
.. ++.+.. ..+++.+.+++.....++++.++++|||||+|||+++|+||++.|++|++|+++++|++
T Consensus 186 ---~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id~~~ip~~- 252 (287)
T cd02195 186 ---GL-----ARGEDI----DAALESMARLNRAAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPLL- 252 (287)
T ss_pred ---cc-----CChHHH----HHHHHHHHhhhHHHHHHHHhcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEEeCCCceE-
Confidence 00 222211 12233344444444556666679999999999999999999999999999999999874
Q ss_pred hHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 248 PLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
+++|++||++++++++++.+.+++ ++++||+|
T Consensus 253 -----------------------~~~Ggll~~v~~e~~~~~~~~~~~~g~~~~~IG~v 287 (287)
T cd02195 253 -----------------------QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287 (287)
T ss_pred -----------------------eccCceEEEEcHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 135569999999999999888876 79999985
No 7
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00 E-value=1.5e-47 Score=357.84 Aligned_cols=280 Identities=21% Similarity=0.244 Sum_probs=219.9
Q ss_pred CCCCCCCCCeeEEeCCCCCCCCCceEEEeecC------CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC
Q psy12424 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDF------FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST 79 (324)
Q Consensus 6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~------~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~ 79 (324)
++.+++||||||+++++ +.+|++|||+ |.|.+.+||++||+++++|+|||+||||+|+++ +.++++|+
T Consensus 19 ~~~~~~gdDaavi~~~~-----~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~~-~~~l~~p~ 92 (318)
T PRK05731 19 SRELGIGDDAALLGPPP-----GQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAF-LLALALPK 92 (318)
T ss_pred ccCCCCCCcEEEeccCC-----CCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcceE-EEEEEcCC
Confidence 34479999999999875 4689999995 345567999999999999999999999999987 47789997
Q ss_pred CCChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHH
Q psy12424 80 QLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVT 159 (324)
Q Consensus 80 ~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~ 159 (324)
.++. ++++++++||+++|++||++++||||+.++.+++++|++|.+++.+++.+++++|||.|+++|++|.+..
T Consensus 93 ~~~~----~~l~~i~~Gi~~~~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~a~~Gd~i~ltg~~G~~~~-- 166 (318)
T PRK05731 93 DLDE----AWLEALADGLFELADRYGAELIGGDTTRGPDLSISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAA-- 166 (318)
T ss_pred CCCH----HHHHHHHHHHHHHHHHhCCeEECcccCCCCCcEEEEEEEEEcCCCCcccccCCCCCCEEEEECCccHHHH--
Confidence 6665 5799999999999999999999999999998999999999998877899999999999999999998765
Q ss_pred HHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 160 IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMAT--INKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
++..++.. . . ++.....+ ..+.+.+ ++......++++ +++|||+|+ ||+++|+||++.+++|++
T Consensus 167 g~~~~~~~-~--~-----~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~-v~a~~DiS~-GL~~~l~ema~~s~~g~~ 232 (318)
T PRK05731 167 GLALLLNG-L--R-----VPDADAAA----LISRHLRPQPRVGLGQALAGL-ASAAIDISD-GLAADLGHIAEASGVGAD 232 (318)
T ss_pred HHHHHhcC-C--C-----CChhhHHH----HHHHhcCCCCCHHHHHHHhhh-chhheechH-hHHHHHHHHHHHCCCeEE
Confidence 44332211 0 0 22221111 1222221 122223445555 999999999 899999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEec
Q psy12424 238 FMIHTLPILYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKD 313 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~ 313 (324)
|+++++|+.+.+.++ .++.+ +...+++|++|+ ||+++|+++++++++.+++ ++++||+|++++ .+..
T Consensus 233 i~~~~ipi~~~~~~~--~~~~~~~~~~~~~g~~~~----ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~~~~---~~~~ 303 (318)
T PRK05731 233 IDLDALPISPALREA--AEGEDALRWALSGGEDYE----LLFTFPPENRGALLAAAGHLGVGVTIIGRVTEGE---GVVV 303 (318)
T ss_pred EeHHhCCCCHHHHHH--hcCCCHHHHHhcCCCcee----EEEEECHHHHHHHHHHHHhcCCCceEEEEEEcCc---eEec
Confidence 999999999988875 33433 333456788887 9999999999999999986 899999999875 3344
Q ss_pred CCceEee
Q psy12424 314 SPDIFHV 320 (324)
Q Consensus 314 ~~~~~~~ 320 (324)
+++.+++
T Consensus 304 ~~~~~~~ 310 (318)
T PRK05731 304 DGEPVTL 310 (318)
T ss_pred CCCEeec
Confidence 6666543
No 8
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=100.00 E-value=3.9e-47 Score=354.80 Aligned_cols=282 Identities=20% Similarity=0.273 Sum_probs=220.3
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCC------CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFF------YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~------~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
.+++|||||++++++ +..+++|+|++ ++.+ +||++||++|++|+|||+||||+|++++ .++++|+.+
T Consensus 20 ~~g~gdDaavi~~~~-----~~~lvis~D~~~~~~~~~~~~-~p~~~G~~av~~~~sDiaa~Ga~P~~~~-~~~~~P~~~ 92 (317)
T TIGR01379 20 ALGIGDDAALVSAPE-----GRDLVLTTDTLVEGVHFPPDT-TPEDLGWKAVAVNLSDLAAMGATPKWFL-LSLGLPSDL 92 (317)
T ss_pred ccCCCCcEEEEecCC-----CCeEEEEeccccCCcCCCCCC-CHHHHHHHHHHHHHHHHHHcCCcccEEE-EEEEcCCCC
Confidence 368999999999886 56899999964 3333 9999999999999999999999999874 668999877
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIR 161 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~ 161 (324)
+. .+++++++||+++|+++|++++||||+.++++++++|++|.+++.+++.+.++++||.|++||++|.+.. ++
T Consensus 93 ~~----~~l~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~a~~Gd~I~ltg~~G~~~~--~~ 166 (317)
T TIGR01379 93 DE----AWLEAFYDGLFECAKQYGVPLVGGDTVSSPELVVTVTAIGEAPKGRALLRSGAKPGDLVFVTGTLGDSAA--GL 166 (317)
T ss_pred CH----HHHHHHHHHHHHHHHHcCCeEECccCCCCCCcEEEEEEEEEeCCCCceecCCCCCCCEEEEcCchhHHHH--HH
Confidence 66 4799999999999999999999999999999999999999998877899999999999999999988764 33
Q ss_pred HhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEec
Q psy12424 162 SWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIH 241 (324)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~ 241 (324)
..+.. +. . . . ..+. .....+..+..++++ .....+.+ .+++|||+|+ ||+++|+||++.+++|++|+++
T Consensus 167 ~~~~~-~~-~--~-~-~~~~-~~~~~~~~~~p~~~~--~~~~~l~~-~v~a~~DvS~-GL~~~l~ema~~sg~g~~i~~~ 235 (317)
T TIGR01379 167 ALLLK-GK-K--E-P-DEED-DEELLQRHLRPEPRV--EEGLALAG-YANAAIDVSD-GLASDLGHIAEASGVGIVIDLD 235 (317)
T ss_pred HHHhc-CC-c--c-C-cchh-HHHHHHHhcCCCChH--HHHHHHhh-hcceeEEchH-hHHHHHHHHHHHcCCcEEEehh
Confidence 22211 10 0 0 0 1111 111111111112222 12333444 4999999999 7999999999999999999999
Q ss_pred CCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEecCCCcEEEecCCceEe
Q psy12424 242 TLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIFH 319 (324)
Q Consensus 242 ~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~~~~~~~~l~~~~~~~~ 319 (324)
++|+++.+.++|+.. ..++..+++|++|+ ||+++++++++++.+.++.++++||+|+++++.+. ..+++.+.
T Consensus 236 ~ipv~~~~~~~~~~~-~~~~~~~~~ge~~~----ll~~v~~~~~~~~~~~~~~~~~~IG~v~~~~~~~~-~~~~~~~~ 307 (317)
T TIGR01379 236 RLPLSSELAAWAEGK-DPLEWALSGGEDYE----LVFTVPPERREALLDAAKGPLTRIGRVTEGEGVVL-LADGKTVE 307 (317)
T ss_pred cCCCCHHHHHHhcCC-CHHHHHhcCCccee----EEEEeCHHHHHHHHhhccCCceEEEEEEcCCceEE-EeCCcEee
Confidence 999999999999822 22444567788887 99999999999999888778999999998765444 46777664
No 9
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=100.00 E-value=5.9e-47 Score=353.89 Aligned_cols=268 Identities=19% Similarity=0.217 Sum_probs=209.2
Q ss_pred CCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCCh-----hhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC
Q psy12424 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHP-----HIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ 80 (324)
Q Consensus 6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p-----~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~ 80 (324)
++.+++||||||+++++ ..|++|||++ +.+| +++||++|++|+|||+||||+|+++ ++++++|..
T Consensus 15 ~~~~~~gdDaavi~~~~------~~lv~ttD~~---~~~p~~~~~~~iG~~av~~n~sDiaamGa~P~~~-~~~l~lp~~ 84 (320)
T TIGR02124 15 NEILAAMEDAAVLELSG------GRLAFSTDSF---VVDPLFFPGGDIGKLAVCGTVNDVAVSGAKPLYL-SCGFILEEG 84 (320)
T ss_pred CcccCCCCceEEEeeCC------CeEEEEecCC---ccCCcccCcccHHHHHHHHHHHHHHHcCCcchhh-EEEEEcCCC
Confidence 34578999999999864 5799999964 3444 4589999999999999999999987 577899977
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChH
Q psy12424 81 LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQ 155 (324)
Q Consensus 81 ~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~ 155 (324)
.+. ++++++++|++++|++||++++||||+.++ .+.+++|++|.+++.++++|++++|||.|++||++|.+
T Consensus 85 ~~~----~~l~~~~~Gi~~a~~~~gi~ivGGdt~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~ltg~~G~~ 160 (320)
T TIGR02124 85 FPI----EDLERIVKSMAEAARKAGVKIVTGDTKVVEKGKADGIFINTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGDH 160 (320)
T ss_pred CCH----HHHHHHHHHHHHHHHHcCCEEEeeeeEEccCCCCCcEEEEEEEEEEEcCCccccccCCCCCCEEEEeCCccHH
Confidence 765 699999999999999999999999999764 36788999999988789999999999999999999986
Q ss_pred HHHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCeEeeccCCccccchhHHhhhhCCC
Q psy12424 156 MSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKY-NAHACTDVTGYGLTGHATNLVKYQTN 234 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~a~~DiS~GGL~~~L~~la~~s~~ 234 (324)
.. ++..++. +.. ++... .. . .+. ..+....+++.. .+++|||||+|||+++|+||+++|++
T Consensus 161 g~--~l~~~~~--~~~------~~~~~-~~-~---~~~---~~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~ela~~s~~ 222 (320)
T TIGR02124 161 GA--AILAVRE--GLG------FETNL-ES-D---CAP---LNGLVETLLNAGPAVHAMRDATRGGLAAVLNEWAQASGV 222 (320)
T ss_pred HH--HHHHhhc--ccC------CCccc-hh-h---hhh---hHHHHHHHHhccCCceEEECCCCccHHHHHHHHHHHcCC
Confidence 54 3322211 110 11110 00 0 000 111111223332 49999999999999999999999999
Q ss_pred eEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-----ccceEEEEecCCCc-
Q psy12424 235 SVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-----LAWIIGKVTPGDRS- 308 (324)
Q Consensus 235 g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-----~~~~IG~V~~~~~~- 308 (324)
|++|+++++|+++.++++++.++. .+++++++|+|||++++++++++++.+++ ++++||+|++++.+
T Consensus 223 g~~I~~~~ipi~~~~~~~~~~~~~-------~~~~~~~~G~ll~~v~~~~~~~~~~~~~~~~~gi~~~~IG~v~~~~~~~ 295 (320)
T TIGR02124 223 GIVIEEEKIPVKEEVKGACELLGL-------DPLYLANEGKLVLAVPPEAAEKVLEILKSHPYGKDAAIIGEVVERKEGR 295 (320)
T ss_pred eEEEecccCCCCHHHHHHHHHhCC-------CHHHHhcCCcEEEEECHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCE
Confidence 999999999999999998876543 23456677889999999999999988863 68999999987653
Q ss_pred EEEe
Q psy12424 309 VIIK 312 (324)
Q Consensus 309 ~~l~ 312 (324)
+.+.
T Consensus 296 v~~~ 299 (320)
T TIGR02124 296 VVLK 299 (320)
T ss_pred EEEE
Confidence 6555
No 10
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=1.6e-46 Score=346.95 Aligned_cols=261 Identities=18% Similarity=0.233 Sum_probs=201.9
Q ss_pred CCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCC--CccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh
Q psy12424 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFY--PLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE 83 (324)
Q Consensus 6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~--~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~ 83 (324)
++..++|||||++++++ ..+++|||++. |++..++++||++|++|+|||+||||+|+++ ++++++|...+.
T Consensus 20 ~~~~~~~DDaavi~~~~------~~lv~ttD~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~-~~~l~lp~~~~~ 92 (293)
T cd02197 20 NPILEVLEDAAALLVGG------GRLAFTTDSFVVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLYL-SLGFILEEGFPL 92 (293)
T ss_pred CcccccCCceEEEecCC------ceEEEEecCccccCcccCchhHHHHHHHhhHHHHHHcCCcchhh-eEEEECCCCCCH
Confidence 34568899999999864 57999999752 1122446789999999999999999999987 688999977665
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHH
Q psy12424 84 DERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSV 158 (324)
Q Consensus 84 ~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~ 158 (324)
++++++++||+++|++||++++||||++++ .+.+++|++|.+++.+.+.|++++|||.|++||++|.+..
T Consensus 93 ----~~l~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~i~vtG~~G~~~~- 167 (293)
T cd02197 93 ----EDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISPSNIRPGDKIIVSGTIGDHGA- 167 (293)
T ss_pred ----HHHHHHHHHHHHHHHHcCCEEEeceeEeccCCccCceEEEEEEEEEEcCCccccccCCCCCCEEEEeCCccHHHH-
Confidence 799999999999999999999999999765 3678889999998878889999999999999999998654
Q ss_pred HHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 159 TIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKY-NAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
++...+. +. . ++... ....... ......+++.. .++||||||||||+++|+||+++|++|++
T Consensus 168 -~l~~~~~--~~---~---~~~~~-----~~~~~~~---~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~ 230 (293)
T cd02197 168 -AILAARE--GL---G---FETDI-----ESDCAPL---NGLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIE 230 (293)
T ss_pred -HHHhccc--CC---C---cchhh-----hhhhhhh---hHHHHHHHhcCCCceEEEcCCcchHHHHHHHHHHHcCCeEE
Confidence 2221111 10 0 11110 0001111 11112233332 59999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-----ccceEEEE
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-----LAWIIGKV 302 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-----~~~~IG~V 302 (324)
|+++++|+++.+.++++.++.+ +++++++|+|||++|+++++++++.+++ ++++||+|
T Consensus 231 I~~~~iP~~~~~~~~~~~~~~~-------~~~~~~~G~ll~tv~~~~~~~i~~~l~~~~~gi~~~vIG~v 293 (293)
T cd02197 231 IEEEAIPVREEVRGACEMLGLD-------PLYLANEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred EeeccCCCCHHHHHHHHHhCcC-------HHHHhcCCcEEEEECHHHHHHHHHHHHhCCCCCCeEEEEeC
Confidence 9999999999999998765542 2345566789999999999999988863 68899985
No 11
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00 E-value=2.3e-46 Score=345.79 Aligned_cols=263 Identities=19% Similarity=0.232 Sum_probs=204.9
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCC------CccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFY------PLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~------~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
..++|||||+++. . +..+++|||++. +.+ +||++||+++++|+|||+||||+|+++ ++++++|+.+
T Consensus 20 ~~~~gdDaavi~~-~-----~~~lv~t~D~~~~~~~f~~~~-~p~~~G~~av~~~~sDi~a~Ga~P~~~-~~~l~~p~~~ 91 (291)
T cd02194 20 LLGIGDDAAVLKP-P-----GGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALAVNLSDLAAMGARPLGF-LLSLGLPPDT 91 (291)
T ss_pred CCCCCCCEEEecC-C-----CCeEEEEecccccccCCCCCC-CHHHHHHHHHHHHHHHHHHcCCcccee-EEEEECCCCC
Confidence 4689999999983 3 468999999764 233 999999999999999999999999987 5889999877
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIR 161 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~ 161 (324)
++ ++++++++||+++|++||++++||||+.++.+++++|++|.+++.+++.|+++++||.|++||++|.+.. ++
T Consensus 92 ~~----~~l~~i~~Gi~~a~~~~g~~liGGdt~~~~~~~i~vt~iG~~~~~~~~~~~~a~~GD~I~ltg~~G~~~~--g~ 165 (291)
T cd02194 92 DE----EWLEEFYRGLAEAADRYGVPLVGGDTTSGSELVISVTALGEVEKGKPLRRSGAKPGDLLYVTGTLGDAAA--GL 165 (291)
T ss_pred CH----HHHHHHHHHHHHHHHHcCCeEEcccCCCCCCeEEEEEEEEecCCCCceecCCCCCCCEEEEeCCccHHHH--HH
Confidence 66 5899999999999999999999999999999999999999998777899999999999999999998765 44
Q ss_pred HhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424 162 SWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATIN--KKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239 (324)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~ 239 (324)
.+++.... .+.+.. ++..+.+.++. ......+.+..+++|||+|| ||+++|+|||+.+++|++|+
T Consensus 166 ~~~~~~~~--------~~~~~~----~~~~~~~~~p~~~~~~~~~l~~~~v~a~~DiSd-GL~~~l~ela~~s~~g~~i~ 232 (291)
T cd02194 166 ALLLGGLK--------LPEELY----EELIERHLRPEPRLELGRALAEGLATAMIDISD-GLLADLGHIAEASGVGAVID 232 (291)
T ss_pred HHHhCCCC--------CChhhH----HHHHHHhcCCCCcHHHHHHHHhCCCeEEEEchH-hHHHHHHHHHHHcCCeEEEe
Confidence 33321100 111111 11122222221 12233444356999999999 79999999999999999999
Q ss_pred ecCCCCChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEe
Q psy12424 240 IHTLPILYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVT 303 (324)
Q Consensus 240 ~~~iP~~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~ 303 (324)
++++|+++.+.+ +.++.+ +...+++|+||+ |||+++++++.+..+....++++||+|+
T Consensus 233 ~~~ipi~~~~~~--~~~~~~p~~~~~~gGedy~----ll~~v~~~~~~~~~~~~~~~~~~IG~v~ 291 (291)
T cd02194 233 LDKLPLSPALRA--AELGEDALELALSGGEDYE----LLFTVPPENAEAAAAKLGVPVTVIGRVT 291 (291)
T ss_pred cccCCCCHHHHh--hhcCCCHHHHHhcCCcceE----EEEEechhHhHHHHhhcCCCceEEEEEC
Confidence 999999999887 444444 445568899998 9999999886222222111899999985
No 12
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=4.2e-46 Score=345.13 Aligned_cols=261 Identities=20% Similarity=0.233 Sum_probs=207.3
Q ss_pred CCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHH
Q psy12424 11 IGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIV 90 (324)
Q Consensus 11 ~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~ 90 (324)
+|||||++++++ ..+++|||. ++.+||++||+++++|+|||+||||+|+++ ++++++|+.+++ +++
T Consensus 31 ~gdDaav~~~~~------~~lv~s~D~---~~~~~~~iG~~av~~~~sDi~amGa~P~~~-~~~l~~p~~~~~----~~l 96 (298)
T cd06061 31 GGEDAAVVDFGG------KVLVVSTDP---ITGAGKDAGWLAVHIAANDIATSGARPRWL-LVTLLLPPGTDE----EEL 96 (298)
T ss_pred ccceeEEEeeCC------cEEEEEcCc---eeeCCcceeeehhhhhHHHHHhcCCCCcee-EEEEEcCCCCCH----HHH
Confidence 689999998764 579999995 555699999999999999999999999987 577899987776 689
Q ss_pred HHHHHHHHHHHHHhCCeeeCccccccCC---ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhhh
Q psy12424 91 PMLIEGFKAQASVAGVNISKVAVKLNPW---MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNE 167 (324)
Q Consensus 91 ~~i~~Gi~~a~~~~g~~ivGGdt~~~~~---~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~~ 167 (324)
+++++|++++|++||++++||||..++. +++++|++|.+++.+++.|++++|||.|+++|++|.+.. ++.+...
T Consensus 97 ~~~~~Gi~~~~~~~gi~ivGG~t~~~~~~~~~~i~vt~~G~~~~~~~~~~~~a~~Gd~i~ltg~~G~~~~--~l~~~~~- 173 (298)
T cd06061 97 KAIMREINEAAKELGVSIVGGHTEVTPGVTRPIISVTAIGKGEKDKLVTPSGAKPGDDIVMTKGAGIEGT--AILANDF- 173 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEeeeeEEcCCCCccEEEEEEEEEEcccccccccCCCCCCEEEEeCCchHHHH--HHHHHhh-
Confidence 9999999999999999999999998874 789999999998777888999999999999999998754 3332211
Q ss_pred hhhhhhhcccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCC
Q psy12424 168 EKLSFLKSIKVDSAMLKQCVNSAITLMATIN-KKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPIL 246 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~ 246 (324)
.+.+... +++..+... .+.+.++. ......+++..+++|||||||||+++|+||++++++|++|+++++|++
T Consensus 174 --~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~DiSdGGL~~~l~~la~~s~~g~~i~~~~iP~~ 246 (298)
T cd06061 174 --EEELKKR-LSEEELREA----AKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIR 246 (298)
T ss_pred --HHHHhhh-cCHHHHHHH----HHhhhhhhhHHHHHHhhhcCeeEEEeCCccHHHHHHHHHHHHcCCeEEEEecccCcC
Confidence 1111111 333322211 11111221 122334445469999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 247 YPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
+.++++|+.++.+ +++++++|+|||++|+++.+++++.+++ ++++||+|
T Consensus 247 ~~~~~~~~~~~~~-------~~~~~~~G~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~v 298 (298)
T cd06061 247 QETKEICEALGID-------PLRLISSGTLLITVPPEKGDELVDALEEAGIPASVIGKI 298 (298)
T ss_pred HHHHHHHHHcCCC-------HHHhhcCCcEEEEEChHHHHHHHHHHHHCCCCeEEEEeC
Confidence 9999999866542 2345667889999999999999998876 78999985
No 13
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=5.9e-44 Score=335.19 Aligned_cols=268 Identities=19% Similarity=0.213 Sum_probs=201.7
Q ss_pred CCCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCC-ccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh
Q psy12424 5 SLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP-LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE 83 (324)
Q Consensus 5 ~~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~-~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~ 83 (324)
.-+.+..+|||++++.++ ..|++|||.++. ...+|+++||+++++|+|||+||||+|+++ +..+++|++++.
T Consensus 29 ~~~~~~~dDdaa~~~~~~------~~lv~ttDgvh~~~~~~p~~~G~~av~~nvSDIaAmGa~P~~~-l~sl~lp~~~~~ 101 (346)
T cd02691 29 EVSIVAQDDDAGVDAADV------EYIVVAIDGIHSRLSDFPFLAGFHATRAALRDVMVMGARPVAL-LSDIHLADDGDV 101 (346)
T ss_pred CCccccccCceEEEccCC------CeEEEEeCCCCCCcccChHHHHHHHHHHHHHHHHHcCCchHHh-heeeecCCCCCH
Confidence 345567889999988654 689999997643 235899999999999999999999999987 455899987776
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCeeeCcccccc-------CCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 84 DERDIIVPMLIEGFKAQASVAGVNISKVAVKLN-------PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 84 ~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~-------~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
++++++++||.++|++||++++||||..+ +.+.+++|++|.+++ ..+.|+++||||.|++||++|.+.
T Consensus 102 ----~~l~~i~~Gi~~a~~~~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~-~~~~r~gA~pGD~I~vtg~~Gg~~ 176 (346)
T cd02691 102 ----GKLFDFTAGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKS-DPSRRKNAEPGDLILMTEGAGGGT 176 (346)
T ss_pred ----HHHHHHHHHHHHHHHHcCCeEEeeeeEEecCCcccCCceEEEEEEEEEecc-ccccccCCCCCCEEEEECCccHHH
Confidence 68999999999999999999999999874 234567899998865 456779999999999999987543
Q ss_pred HHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCeEeeccCCccccchhHHhhhhC
Q psy12424 157 SVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKK----YNAHACTDVTGYGLTGHATNLVKYQ 232 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~a~~DiS~GGL~~~L~~la~~s 232 (324)
.. ++.++... ...+... +.+.. . ...+.+.+ ..++||||+|||||+++|+||+++|
T Consensus 177 ~~-~l~ll~~~--~~~~~~~-~~~~~--------------~--~~~~~l~~~~~~~~v~am~DiSdGGL~~~L~ela~aS 236 (346)
T cd02691 177 IT-TTAIYHGM--PDVVEET-LNVDF--------------I--KACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTA 236 (346)
T ss_pred HH-HHHHHccc--hhHHHhh-ccHHH--------------H--HHHHHHHHhCCCCCeEEEEcCCCchHHHHHHHHHHHc
Confidence 21 32222110 0000000 11110 0 11122222 1389999999999999999999999
Q ss_pred CCeEEEEecCCC--CChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCC
Q psy12424 233 TNSVNFMIHTLP--ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDR 307 (324)
Q Consensus 233 ~~g~~i~~~~iP--~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~ 307 (324)
++|++|+.++|| ++++++++|+.++.+. +.. +.++|||++|++.++++++.++. ++++||+|+++++
T Consensus 237 gvg~~Id~~~IP~pl~~~v~~~~~~~~~~p-------~~~-~~~~LL~tv~~~~~~~v~~~l~~~g~~~~vIG~V~~~~~ 308 (346)
T cd02691 237 GVSLVFDEEKVRSLINPKVLKMLEELGIDP-------LGV-SLDSLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRG 308 (346)
T ss_pred CCEEEEEhhhCccccCHHHHHHHHHcCCCh-------hHc-ccCcEEEEEChHHHHHHHHHHHhcCCCeEEEEEEEeCCc
Confidence 999999999997 8999999998765431 111 22359999999999999988876 7899999998754
Q ss_pred cEEEec
Q psy12424 308 SVIIKD 313 (324)
Q Consensus 308 ~~~l~~ 313 (324)
+.+..
T Consensus 309 -~~l~~ 313 (346)
T cd02691 309 -VPLVV 313 (346)
T ss_pred -eEEEe
Confidence 45534
No 14
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=4.7e-44 Score=334.26 Aligned_cols=265 Identities=15% Similarity=0.258 Sum_probs=197.7
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCC--ccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP--LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~--~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
.+++|||||++++++ +..|++|+|++.+ ...+||++||++|++|+|||+||||+|+++ ++++++|+ +
T Consensus 40 ~~g~GdDaavi~~~~-----~~~lvistD~~~~~~~~~~p~~~G~~av~~nlsDiaamGa~P~~~-~~~L~~~~---~-- 108 (323)
T TIGR03267 40 IVDFGDDAAAIKIGG-----DDILLLAADGIWGKLLDADPWWAGYCAVLVNVNDIAAMGGKPVGM-VNVLSIND---V-- 108 (323)
T ss_pred eeccCCceEEEEcCC-----CCEEEEEecCcCCcccccChhHhhHHhhhhhhhhHHhcCCEehhH-hhhhcCCC---H--
Confidence 468999999999876 5689999998743 346899999999999999999999999987 67788873 4
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCcccccc-CCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhh
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLN-PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWL 164 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~-~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~ 164 (324)
++++++++||+++|++||++++||||... +.+.+++|++|.+++.++++|++++|||.|+++++++.... ..+..
T Consensus 109 --~~l~~~~~Gi~~a~~~~gi~ivGGdT~~~~~~~~i~vt~iG~~~~~~~~~r~~a~~GD~I~vtg~l~g~~~-~~~~~- 184 (323)
T TIGR03267 109 --DVCREVLEGMREGAWKFGVPVVGGHTHPDTPYNALDVAIVGIAKEDCIIRSDTAKPGDLIIFAIDLDGRPY-PSFPL- 184 (323)
T ss_pred --HHHHHHHHHHHHHHHHcCCCEEccccCCCCCcceeeEEEEEEEcCcceeeCCCCCCCCEEEEEEcCCCccc-ccccc-
Confidence 58999999999999999999999999864 34578899999998888899999999999999998754321 01110
Q ss_pred hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCC
Q psy12424 165 KNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLP 244 (324)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP 244 (324)
.+.... . .++.. +....+ ....+..+..++||||+|||||+++|+||+++|++|++|+++++|
T Consensus 185 ----~~~~~~-~-~~~~~--------~~~~~~---~~~~~~~~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~~~~iP 247 (323)
T TIGR03267 185 ----NWDTTT-M-KSPDY--------LRAQMD---AVVEIAERKLVKAGKDISNPGLIGTLGMLLEASRVGAEVDLESIP 247 (323)
T ss_pred ----Cccchh-c-cCHHH--------HHHHHH---HHHHHHHhCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEEcCccc
Confidence 000000 0 11110 111111 112233444599999999999999999999999999999999999
Q ss_pred CChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEec-CCceE
Q psy12424 245 ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKD-SPDIF 318 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~-~~~~~ 318 (324)
+++.+.. ++ |. .++. ++++||++|+++++++++.+++ ++++||+|++++ .+.+.. +++.+
T Consensus 248 ~~~~~~~-~~-----~l-~~~~------g~~ll~tv~~e~~~~~~~~~~~~g~~~~~IG~v~~~~-~~~l~~~~~~~~ 311 (323)
T TIGR03267 248 KPEDVDM-VT-----WL-KMYP------GSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDG-KLYVSDGDESAV 311 (323)
T ss_pred CCCCCCH-HH-----HH-HhCC------CCCEEEEECchhHHHHHHHHHHcCCcEEEEEEEecCc-eEEEEECCcceE
Confidence 8775421 11 10 0112 3359999999999999998875 789999999864 344444 44444
No 15
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=100.00 E-value=2.2e-43 Score=330.86 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=203.2
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-----CCh-hhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-----THP-HIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-----~~p-~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
.++|||||++++++. +++..|++|+|...... .+| +++||+++++|+|||+||||+|+++ ++++++| +.+
T Consensus 34 ~g~GdDaav~~~~~~--~~~~~l~~t~D~~g~~~~~~~~~~~~~~~G~~av~~n~sDiaa~Ga~P~~~-~~~l~~~-~~~ 109 (332)
T TIGR00878 34 GGLGGFAGLFDLGDK--YKEPVLVSGTDGVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLFF-LDYLAVG-KLD 109 (332)
T ss_pred cCCCCCeEEEEcccc--cCCceEEEeccccccchHHHHHcCchHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHhcC-CCC
Confidence 489999999998741 00157999999753221 245 4499999999999999999999987 6888875 345
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ ++++++++||+++|+++|++++||||+.+++ ..+++|++|.+++++++++++++|||.|++||++|.+.
T Consensus 110 ~----~~~~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~i~ltg~~G~~~ 185 (332)
T TIGR00878 110 P----EVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIGLGSSGIHS 185 (332)
T ss_pred H----HHHHHHHHHHHHHHHHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcCccccCccCCCCCCEEEEECCchHHH
Confidence 4 5899999999999999999999999997765 46778999999888899999999999999999988765
Q ss_pred HHHHHHhhhhh-h-hhhh-hhcccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCeEeeccCCccccchhHHhh
Q psy12424 157 SVTIRSWLKNE-E-KLSF-LKSIKVDSAMLKQCVNSAITLMATINK----KAAILMKKYNAHACTDVTGYGLTGHATNLV 229 (324)
Q Consensus 157 ~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~GGL~~~L~~la 229 (324)
. ++.+++.. . .... +.. .... . .....+.+.++.+ ....++++..+++|||||+|||+++|+||+
T Consensus 186 ~--g~~~~~~~~~~~~~~~~~~--~~~~-~---~~~l~~~~l~p~~~~~~~~~~l~~~~~i~a~~DiS~gGL~~~L~e~~ 257 (332)
T TIGR00878 186 N--GLSLVRKVLEDIAGLDYED--TPED-F---GKTLGEELLEPTRIYVKPILELIKEVEVHGLAHITGGGLLENIPRRL 257 (332)
T ss_pred H--HHHHHHHHhhhcccccccc--cccc-c---cchHHHHHhhHhHHHHHHHHHHHhcCCceEEEeCCCccHhhhHHHhc
Confidence 4 43332210 0 0000 000 0000 0 0112223333322 223344444599999999999999999998
Q ss_pred hhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecC
Q psy12424 230 KYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPG 305 (324)
Q Consensus 230 ~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~ 305 (324)
.+++|++|+.+++|+++.+..+++..+.+..+ ++.. +.+++|||+++++++++++++.+++ ++++||+|+++
T Consensus 258 -~sg~g~~I~~~~ipi~~~~~~~~e~~~~~~~e-~~~~--~~~g~glli~v~~e~~~~~~~~l~~~gi~a~vIG~V~~~ 332 (332)
T TIGR00878 258 -PDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEE-MYRT--FNMGVGFVVIVPEEEVDKALALLNARGEKAWVIGEVKKG 332 (332)
T ss_pred -cCCceEEEecCCCCCCHHHHHHHHCCCCChHH-HHHH--HhccCCEEEEECHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 57999999999999999999999865443211 1111 2346689999999999999999987 79999999753
No 16
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=100.00 E-value=2.9e-43 Score=329.80 Aligned_cols=270 Identities=16% Similarity=0.182 Sum_probs=200.4
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
.|+|||||+++++.+. .+..+++|+|.+... ...|+++||++|++|+|||+||||+|+++ ++++++|+ .+
T Consensus 34 ~giGdDaav~~~~~~~--~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~av~~n~sDIaamGa~P~~~-~~~l~~~~-~~ 109 (327)
T PRK05385 34 GGLGGFGGLFDLPKGY--KEPVLVSGTDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLFF-LDYIATGK-LD 109 (327)
T ss_pred cCCcCccEEEeccccc--CCcceeeccccccchhHHHHHhCCHhhHHHHHHHHHHHHHHHcCCCHHHH-HHHHhcCC-CC
Confidence 5899999999875200 035799999975221 34578999999999999999999999987 57788854 45
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ ++++++++||+++|++||++++||||..++. +.+++|++|.++++++++|++++|||.|++||..|...
T Consensus 110 ~----~~~~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~~tg~~G~~g 185 (327)
T PRK05385 110 P----EVAAQVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSKVKEGDVLIGLASSGLHS 185 (327)
T ss_pred H----HHHHHHHHHHHHHHHHcCCeEeCccceECCCcccCCCeeEEEEEEEEEecccccCcCCCCCCCEEEEeCCcchhh
Confidence 4 6899999999999999999999999988765 56788999999888889999999999999999887664
Q ss_pred HHHHHHhhhh-hhhh-hhhhcccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCeEeeccCCccccchhHHhhh
Q psy12424 157 SVTIRSWLKN-EEKL-SFLKSIKVDSAMLKQCVNSAITLMATIN----KKAAILMKKYNAHACTDVTGYGLTGHATNLVK 230 (324)
Q Consensus 157 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~ 230 (324)
. ++.++.. ..+. ............ ..+.+.++. .....++++..+++|||||+|||+++|+||+
T Consensus 186 ~--g~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdgGL~~~L~eia- 255 (327)
T PRK05385 186 N--GYSLVRKILEVLDLDDTLPELDGKT-------LGEELLEPTRIYVKPVLALLKEVDVKGMAHITGGGFIENLPRVL- 255 (327)
T ss_pred h--HHHHHHHHHHhccccccccccccch-------HHHHHhhhhHHHHHHHHHHHhcCCceEEEeCCCchHhhhhHHhc-
Confidence 3 2222110 0000 000000000000 111122222 1212344555699999999999999999999
Q ss_pred hCCCeEEEEecCCCCChhHHHHhcccCCccccc---ccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 231 YQTNSVNFMIHTLPILYPLGVIASRPGTRFYQN---VNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 231 ~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~---l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
+|++|++|+++++|+++.++.+++.++.++.+. ++.| .+||+++|+++++++++.+++ ++++||+|
T Consensus 256 ~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~G------~~Ll~tv~~~~~~~l~~~l~~~g~~~~~IG~v 327 (327)
T PRK05385 256 PEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMG------IGMVLIVPPEDADAALALLEAAGEDAWVIGRV 327 (327)
T ss_pred CCCceEEEecCCCCCCHHHHHHHHcCCCCHHHHHHHHhcC------CcEEEEECHHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999998877654321 2222 259999999999999998876 79999986
No 17
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=3e-43 Score=325.66 Aligned_cols=278 Identities=16% Similarity=0.159 Sum_probs=203.3
Q ss_pred CCCCCeeEEeCCCCCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh
Q psy12424 10 EIGLDSCIIPLASGRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE 83 (324)
Q Consensus 10 ~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~ 83 (324)
.+|.||++|++.. .++++..|+++||.+.+. +..++++||++|++|+|||+||||+|+++ ++++++|+ .++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~-~~~l~~~~-~~~ 78 (297)
T cd02196 2 GIGGFAGLFDLGL-GGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFF-LDYIATGK-LDP 78 (297)
T ss_pred CCCceeEEEeccc-cCCCCcEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeHHH-HhhhhcCC-CCH
Confidence 5789999999875 122347799999977432 34578999999999999999999999987 67899976 455
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 84 DERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 84 ~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
+++.++++||+++|+++|++++||||+.+++ +.+++|++|.+++++++++++++|||.|+++|+.|....
T Consensus 79 ----~~l~~~~~Gi~~~~~~~gi~ivGGdt~~~~~~~~~~~~~isvt~iG~~~~~~~~~~~~a~~Gd~I~~tg~~G~~~~ 154 (297)
T cd02196 79 ----EVAAEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLIGLPSSGLHSN 154 (297)
T ss_pred ----HHHHHHHHHHHHHHHHcCCeEeeecceEccCcccCCceeEEEEEEEEEeccccccccCCCCCCEEEEccCcchhhh
Confidence 5899999999999999999999999997765 458889999998888999999999999999999887654
Q ss_pred HHHHHhhhhh--hhhhhhhcccCChHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCC
Q psy12424 158 VTIRSWLKNE--EKLSFLKSIKVDSAMLK-QCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTN 234 (324)
Q Consensus 158 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~ 234 (324)
++.+++.. ........ +.. .+. +..+..++...+.......++++..+++|||+|+|||+++|+||++. ++
T Consensus 155 --g~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~e~a~~-~~ 228 (297)
T cd02196 155 --GYSLVRKILFEEGLDYDD--PEP-GLGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPE-GL 228 (297)
T ss_pred --HHHHHHHHHhhccccccc--ccc-cccchHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCchhhccHhhccC-Cc
Confidence 33332210 00000000 000 000 01111111111111121234445569999999999999999999965 99
Q ss_pred eEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEe
Q psy12424 235 SVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVT 303 (324)
Q Consensus 235 g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~ 303 (324)
|++|++++||+++.++++++.++.++.+ ++. .+.++++||+++++++++++++.+++ ++++||+|+
T Consensus 229 g~~Id~~~iPv~~~~~~~~e~~~~~p~~-~~~--~~~~g~gll~~v~~~~~~~~~~~l~~~gi~a~~IG~v~ 297 (297)
T cd02196 229 GAVIDLGSWEIPPIFKWIQKAGNVSEEE-MYR--TFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297 (297)
T ss_pred eEEEecCCCCCCHHHHHHHHhCCCCHHH-HHH--HHhCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 9999999999998888888876543311 100 01234579999999999999999987 799999985
No 18
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=319.10 Aligned_cols=274 Identities=21% Similarity=0.257 Sum_probs=215.7
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCCh-----hhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHP-----HIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p-----~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
..+..|||++.+++.+ ..|++|||. ++.+| .++||.||+.++|||+.|||+|.|+ ...+.+|+.+
T Consensus 33 v~~~~g~D~~~i~l~~------~~la~tTD~---~~i~P~ff~~~diG~lAV~gt~NDlav~GA~P~~l-~~~lil~eg~ 102 (339)
T COG0309 33 VGLANGEDAAIIDLGD------GVLAFTTDP---FVIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL-SVGLILPEGL 102 (339)
T ss_pred cCcccccceeeeecCC------ceEEEEeCC---eEecccccCCCceEEEEEEEehhhhhhcCCCceee-eEeEecCCCC
Confidence 3346789999999986 389999994 44333 3689999999999999999999997 4668899888
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCc----eEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWM----TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~----~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
+. +.++++++.|.++|+++|++|++|||..++.. .++.|++|...++..++.+++||||.|++||++|.+++
T Consensus 103 ~~----e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~~~~~vi~tt~iG~~~~~~~v~~~~~~~GD~vI~tg~~g~hga 178 (339)
T COG0309 103 PI----EDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGIIDKEILVSPSGARPGDAVIVTGTIGIHGA 178 (339)
T ss_pred CH----HHHHHHHHHHHHHHHHcCCeEEccCceeecCCCCCcEEEeeeEEeecCCcccccCCCCCCCEEEEcCChhHHHH
Confidence 87 68999999999999999999999999998763 56678999999888899999999999999999998876
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
+ +...+... .++.. +..+....+ +.++........+. .+. ++||||.|+|||+++|+|||++|++|++
T Consensus 179 ~--ila~~~~~---~l~~~-l~sD~~~~~--~~~~~~l~~~~~~~-~~~---vtAMhDaTrGGla~aLnEmA~aSgvgi~ 246 (339)
T COG0309 179 S--ILAHRFGE---ELETE-LGSDCAPLA--KLVKALLSVVGEAL-AAA---VTAMHDATRGGLAGALNEMAEASGVGIS 246 (339)
T ss_pred H--HHHHhcch---hhccc-hhhhHHHHH--HHHHHHhhcchhhh-hhh---hhhccCCchhHHHHHHHHHHHHcCCeEE
Confidence 3 32222111 12222 333322111 11222222222211 111 8899999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc----ccceEEEEecCCCcEEEec
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG----LAWIIGKVTPGDRSVIIKD 313 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~----~~~~IG~V~~~~~~~~l~~ 313 (324)
|+.++||+.++++.+|+.+++ +|+...|+|.||++|+|+++++++++|++ ++.+||+|++++..+.+..
T Consensus 247 I~ee~Ipv~~eVr~vce~lGi-------DPl~~anEG~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~~~~v~l~~ 319 (339)
T COG0309 247 IEEEKIPVREEVRGVCELLGL-------DPLELANEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGLET 319 (339)
T ss_pred EeeccccccHHHHHHHHHhCC-------CHHHhhcCceEEEEECHHHHHHHHHHHHhcCCccceeEEEEeccCCcEEEEe
Confidence 999999999999999999886 46667889999999999999999999998 6899999998765344433
No 19
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=5.4e-42 Score=314.62 Aligned_cols=247 Identities=18% Similarity=0.237 Sum_probs=185.6
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCC-cc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP-LV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~-~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
.+++|||||++++++ ..|++|+|++.+ +. .+||++||+++++|+|||+||||+|+++ ++++++|+ +
T Consensus 31 ~~g~GdDaavi~~~~------~~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~Ga~P~~~-~~~l~~p~---~-- 98 (283)
T cd02192 31 AADLGDDAAAIPDGD------GYLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPLAM-VDALWSPS---A-- 98 (283)
T ss_pred cCCCCCCEEEEecCC------cEEEEEecccccccccCCHHHHHHHHHHHHHHHHHhcCCEeeee-eeeecCCC---H--
Confidence 468999999997653 689999998654 32 5899999999999999999999999987 58789984 3
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccC-CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhh
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNP-WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWL 164 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~ 164 (324)
++++++++||+++|++||++|+||||+.++ .+++++|++|.+++.+.+ +++++|||.|++|++++.... +....
T Consensus 99 --e~l~~i~~Gi~~a~~~~gi~ivGGdt~~~~~~~~i~vt~iG~~~~~~~~-r~~a~~GD~I~vtg~l~g~~~--g~~~~ 173 (283)
T cd02192 99 --EAAAQVLEGMRDAAEKFGVPIVGGHTHPDSPYNALSVAILGRARKDLLI-SFGAKPGDRLILAIDLDGRVH--PSPPP 173 (283)
T ss_pred --HHHHHHHHHHHHHHHHcCCcEecccCCCCCCCCeEEEEEEEEEcCCccc-cCCCCCCCEEEEEeCCCCccc--ccccc
Confidence 589999999999999999999999999864 578999999999887777 999999999999988754331 11000
Q ss_pred hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCC
Q psy12424 165 KNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLP 244 (324)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP 244 (324)
.+.... . ...+ .++.+.++.. .+.....+++|||+|||||+++|+||+++|++|++|+++++|
T Consensus 174 ----~~~~~~-~-~~~~--------~~~~~~~~~~---~l~~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id~~~ip 236 (283)
T cd02192 174 ----NWDATT-M-KSPA--------LLRRQIALLP---ELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIP 236 (283)
T ss_pred ----Cccccc-c-CCHH--------HHHHHHHHHH---HHHHcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEecccCC
Confidence 010000 0 1111 1111111111 222233499999999999999999999999999999999999
Q ss_pred CChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEE
Q psy12424 245 ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGK 301 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~ 301 (324)
+++.+. .++. + ..+.++++|+++++++++++++.+++ ++++||+
T Consensus 237 ~~~~~~-~~~~--------l----~~~~~~~ll~~v~~~~~~~v~~~l~~~gi~~~~IG~ 283 (283)
T cd02192 237 RPEGVD-LERW--------L----KCFPGFGFLLTARPENADEVVAVFAAVGITAAVIGE 283 (283)
T ss_pred CCCCCC-hHHH--------H----HhCCCCceEEEECHHhHHHHHHHHHHcCCcEEEeCC
Confidence 876532 1111 1 01123459999999999999998876 7888985
No 20
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=100.00 E-value=4.3e-41 Score=316.03 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=204.1
Q ss_pred CCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-----CChhh-HHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh
Q psy12424 10 EIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-----THPHI-MGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE 83 (324)
Q Consensus 10 ~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-----~~p~~-~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~ 83 (324)
++|||||++++++ +.||+|||.+...+ .++|+ +||++|++|+|||+||||+|+++ ++++. |++++.
T Consensus 84 giGdDaavi~~~~------~~LV~ttD~vgtk~~~a~~~~~~~~iG~~aVa~nvnDIaamGA~P~~~-l~~l~-~~~l~~ 155 (379)
T PLN02557 84 GIGGFGGLFPFGD------SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFF-LDYFA-TSHLDV 155 (379)
T ss_pred CCCCCeEEEecCC------CEEEEEeCCCCCCchhhhhcCcHhhHHHHHHHhHHHHHHHcCCChHHh-heecc-cCCCCH
Confidence 8999999999875 58999999864221 46664 99999999999999999999987 57664 777776
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 84 DERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 84 ~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
++++++++||.++|+++|++++||||.++|. +.+++|++|.+++++++++++++|||.|+.+++.|.+
T Consensus 156 ----~~l~~i~~Gi~~a~~~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~~~akpGD~Iigl~ssGiH-- 229 (379)
T PLN02557 156 ----DLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGLPSSGVH-- 229 (379)
T ss_pred ----HHHHHHHHHHHHHHHHhCCEEEeecceEccCcccCCceeEEEEEEEEEecccccccccCCCCCEEEEecccccc--
Confidence 5899999999999999999999999999764 4688999999999889999999999999999765543
Q ss_pred HHHHHhhhhh---hhhhhhhcccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCC
Q psy12424 158 VTIRSWLKNE---EKLSFLKSIKVDSAMLKQCVNSA-ITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQT 233 (324)
Q Consensus 158 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~ 233 (324)
++++...+.. .... +... ++. ....+.++ +++.....+...+++++..+++|+|+|+|||..+|+||+. ++
T Consensus 230 sng~sl~r~~l~~~~~~-~~~~-~~~--~~~~l~e~ll~pt~iyv~~vl~l~~~~~V~am~diTgGGl~~~L~e~~~-~g 304 (379)
T PLN02557 230 SNGFSLVRRVLAKSGLS-LKDQ-LPG--ASVTIGEALMAPTVIYVKQVLDIISKGGVKGIAHITGGGFTDNIPRVFP-KG 304 (379)
T ss_pred cchhhhhHHHHHhcccc-cccc-ccc--cCccHHHHhhcchHHHHHHHHHHhhcCCeEEEEcCCcchHhhhhHHHhc-CC
Confidence 3344332110 0000 0000 100 00001111 1111111111123444456999999999999999999995 79
Q ss_pred CeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccc-eEEEEEchhhHHHHHHHHhcccceEEEEecCCCcEE
Q psy12424 234 NSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSG-GLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVI 310 (324)
Q Consensus 234 ~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G-~ll~~v~~e~~~~~~~~l~~~~~~IG~V~~~~~~~~ 310 (324)
++++|+.++||+++.++.+++.++.+..+ |+.-| ++| +|+++|++++++++++....++++||+|++++ ++.
T Consensus 305 ~g~~Id~~~~pv~~~f~~i~~~g~i~~~e-m~~tf---N~GiGmv~~V~~~~a~~~l~~~~~~a~~IG~V~~~~-~v~ 377 (379)
T PLN02557 305 LGAKIRTGSWEVPPLFKWLQEAGNIEDAE-MRRTF---NMGIGMVLVVSPEAADRILEEGAYPAYRIGEVINGE-GVV 377 (379)
T ss_pred eeEEEeCCCCCCCHHHHHHHHhCCCCHHH-HHHhc---CCcccEEEEECHHHHHHHHHhcCCCeEEEEEEEcCC-ceE
Confidence 99999999999999999999987765432 32333 567 89999999999998887213899999999764 454
No 21
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00 E-value=5.8e-39 Score=285.19 Aligned_cols=212 Identities=25% Similarity=0.347 Sum_probs=178.7
Q ss_pred EEEeecCCCCccC-ChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCeee
Q psy12424 31 LIQSTDFFYPLVT-HPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNIS 109 (324)
Q Consensus 31 lv~t~D~~~~~~~-~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~iv 109 (324)
|++++|++.+.++ +||++||+++++|+||++|||++|+++ ++++++|+..++ ++++++++|++++|+++|++++
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~~-~~~l~~~~~~~~----~~~~~~~~Gi~~~~~~~gi~iv 76 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIAL-LASLSLSNGLEV----DILEDVVDGVAEACNQLGVPIV 76 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhcCCccHHH-hhheccCCCCCH----HHHHHHHHHHHHHHHHcCCeEe
Confidence 7899999877654 999999999999999999999999987 677999987666 6899999999999999999999
Q ss_pred CccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhhhhhhhhhhcccCChHHHH
Q psy12424 110 KVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLK 184 (324)
Q Consensus 110 GGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (324)
||||+.++ .+++++|++|.+++.+.+.++.++|||.|+++| +.. +
T Consensus 77 gG~t~~~~~~~~~~~~i~~t~~G~~~~~~~~~~~~~~~Gd~lv~~g----------~~~--------------~------ 126 (222)
T cd00396 77 GGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG----------VDA--------------V------ 126 (222)
T ss_pred ceeeEEccCCcCCCceEEEEEEEEecCCccccccCCCCCCEEEEeC----------hHH--------------H------
Confidence 99999997 678999999999877777778999999999998 100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccc
Q psy12424 185 QCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNV 264 (324)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l 264 (324)
. +++++..+++|||+|+|||+++|+||+..+++|++|+++++|+++.+.++++....
T Consensus 127 ---~--------------~l~~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~~~~ip~~~~~~~~~~~~~~------ 183 (222)
T cd00396 127 ---L--------------ELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIE------ 183 (222)
T ss_pred ---H--------------HHHHhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEecccCcCcHHHHHHHHhcCc------
Confidence 0 01112259999999999999999999999999999999999999999888854321
Q ss_pred cCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEE
Q psy12424 265 NRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGK 301 (324)
Q Consensus 265 ~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~ 301 (324)
..+.+++++++|++++|++++++.+.++. ++++||+
T Consensus 184 -~~~~~~~~~~ll~~v~~~~~~~~~~~~~~~g~~~~~IG~ 222 (222)
T cd00396 184 -EALLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222 (222)
T ss_pred -chhhhccCccEEEEECHHHHHHHHHHHHHcCCCEEEeCC
Confidence 11234456679999999999999988876 8899985
No 22
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5.5e-39 Score=292.57 Aligned_cols=251 Identities=13% Similarity=0.053 Sum_probs=181.8
Q ss_pred CeeEEeCCC-CCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHH
Q psy12424 14 DSCIIPLAS-GRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVP 91 (324)
Q Consensus 14 Daavi~~~~-~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~ 91 (324)
||||+++++ . +..+++|+|..+++. .+||++||+++++|+|||+||||+|+++ +.++++|.+.+.++.+++++
T Consensus 1 Daav~~~~~~~----~~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~Ga~P~~~-~~~l~~~~~~~~~~~~~~l~ 75 (264)
T cd02204 1 DAAVLRIPGET----DKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAI-TDCLNFGNPEKPEGEMGQLV 75 (264)
T ss_pred CcEEEEEeCCC----CeEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhhCCchHhe-eeceeccCCCCCcchHHHHH
Confidence 899999873 1 467999999876654 6999999999999999999999999976 56677754333222446799
Q ss_pred HHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCC-CCCCCCCEEEEeCCCChHHHHHHHHh
Q psy12424 92 MLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMP-NQAQPGDVIILTKPLGTQMSVTIRSW 163 (324)
Q Consensus 92 ~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~-~~a~~GD~Ii~tg~~G~~~~~~~~~~ 163 (324)
++++|++++|+++|++++||||+.+++ +++++|++|.+++.+.+.+ ++++|||.|+++|+.|.......+..
T Consensus 76 ~~~~g~~~~~~~~gv~ivGG~t~~~~~~~~~~~~~~~~~t~~G~~~~~~~~~~~~~a~~Gd~i~~~g~~g~~~~~~~~~~ 155 (264)
T cd02204 76 EAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYAL 155 (264)
T ss_pred HHHHHHHHHHHHhCCCcccceeCCccCCCCcccCCcCeEEEEEEccChhhccCcccCCCCCEEEEECCCCCCCCCcHHHH
Confidence 999999999999999999999987643 5788899999987665555 89999999999998775432112211
Q ss_pred hhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCC
Q psy12424 164 LKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTL 243 (324)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~i 243 (324)
......... .+....+. . .++......+.+...++||||+|||||+++|+||++.+++|++|+++++
T Consensus 156 ~~~~~~~~~-----~~~~~~~~-----~---~~~~~~~~~l~~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~~~i 222 (264)
T cd02204 156 AYHGLGGGA-----PPLVDLER-----E---KALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKD 222 (264)
T ss_pred HhcCCCCCC-----CCCCCHHH-----H---HHHHHHHHHHHhCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEcCCC
Confidence 100000100 11111110 1 1111121223333349999999999999999999999999999999999
Q ss_pred CCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 244 PILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 244 P~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
|..+ +. | ..|+.|.+|++++++.++++. ++. ++.+||+|
T Consensus 223 ~~~~------~~--------l----~~e~~g~ll~~~~~~~~~~~~--~~~~~i~~~~IG~v 264 (264)
T cd02204 223 DAED------EL--------L----FSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV 264 (264)
T ss_pred Cccc------ce--------e----ecCCCCeEEEEEChhHHHHHH--HHhCCCCeEEeecC
Confidence 9865 10 1 145677899999999988876 443 78999985
No 23
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=1e-38 Score=297.48 Aligned_cols=265 Identities=12% Similarity=0.123 Sum_probs=189.1
Q ss_pred eEEEeecCCCCc-cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh-------hHHhhHHHHHHHHHHHHH
Q psy12424 30 YLIQSTDFFYPL-VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE-------DERDIIVPMLIEGFKAQA 101 (324)
Q Consensus 30 ~lv~t~D~~~~~-~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~-------~~~~~~~~~i~~Gi~~a~ 101 (324)
.+++++|..+.. ..+||++||++|++|+|||+||||+|+++ ++++++|+...+ ...+++++++++|++++|
T Consensus 27 ~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaamGa~P~~~-~~~l~~p~~~~~~~~~~~~~~~~~~l~~~~~Gi~~~~ 105 (313)
T cd02203 27 AVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARPIAL-LDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYG 105 (313)
T ss_pred EEEEEeccCCCCCCcCCcccHhhhhhhhhhcccccCCEEEEE-eeEEeecCCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 589999986543 46999999999999999999999999987 588999863320 124578999999999999
Q ss_pred HHhCCeeeCccccccCC----ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC----CChHHHHHHHHhhhhhhhhhhh
Q psy12424 102 SVAGVNISKVAVKLNPW----MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP----LGTQMSVTIRSWLKNEEKLSFL 173 (324)
Q Consensus 102 ~~~g~~ivGGdt~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~----~G~~~~~~~~~~~~~~~~~~~~ 173 (324)
++||++++||||+.++. +++.++++|.++++++++|++++|||.|+++|. .|.++.......+.........
T Consensus 106 ~~~gv~lvGGdt~~~~~~~~~p~~~~~~~G~~~~~~~~~~~~a~~GD~I~l~G~~~~~~gl~G~~~~~~~~~~~~~~~~~ 185 (313)
T cd02203 106 NCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFSSKELSENSSELDR 185 (313)
T ss_pred HHhCCceeeeEEEEECCcCCCceEEEEEEEEEehhhcccCCCCCCCCEEEEecCCCCCCCccHHHHHHHHhcCccccccC
Confidence 99999999999998754 577888999998878888999999999999984 5544332121111100000000
Q ss_pred hcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHh
Q psy12424 174 KSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIA 253 (324)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~ 253 (324)
. . +..... ... ..+......+++...++||||+|+|||+++|+||++++++|++|+++++|+.+....
T Consensus 186 ~-~-~~~~~~--~~~------~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~ema~as~~G~~I~~~~iP~~~~~~~-- 253 (313)
T cd02203 186 P-A-VQVGDP--FME------KKLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMS-- 253 (313)
T ss_pred C-C-CCccCH--HHH------HHHHHHHHHHHhcCCEEEEEecCCchHHHHHHHHHhcCCceEEEEecCCcccCCCCC--
Confidence 0 0 111000 000 011111122333445999999998899999999999999999999999998764211
Q ss_pred cccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCCceE
Q psy12424 254 SRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSPDIF 318 (324)
Q Consensus 254 ~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~~~~ 318 (324)
.++. ++ +|+.+++||++++++.+++++.+++ ++++||+|++++ ++.+..+++++
T Consensus 254 -----~~~~-~~----se~~~~ll~tv~~~~~~~~~~~l~~~gi~~~~IG~vt~~~-~~~l~~~~~~~ 310 (313)
T cd02203 254 -----PWEI-WI----SESQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTDDG-RLRLYYKGEVV 310 (313)
T ss_pred -----HHHH-Hh----cCccccEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCC-eEEEEECCeEE
Confidence 1111 11 2334579999999999999998876 789999999764 57777766543
No 24
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.3e-37 Score=307.05 Aligned_cols=275 Identities=14% Similarity=0.156 Sum_probs=202.2
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCC-CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFF-YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~-~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
|..++||||||+++++ +..+++++|+. +|...+||++|+++|..++|||+||||+|+++ +++|.+|
T Consensus 44 ~~~g~gdDAaVi~~~~-----~~~l~~k~Eshn~ps~idPy~GAat~Vgg~irDIaamGA~Pial-ld~L~~~------- 110 (601)
T PRK14090 44 PKTGFEGNAGVVNLDD-----YYSIAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAI-FDSLHMS------- 110 (601)
T ss_pred CCCCCCCCeEEEEeCC-----CCEEEEEECccCCcccCCHHHHHHHHHHHHHhhHhhcCCChhee-EEcCChH-------
Confidence 5568899999999987 57899999975 34447999999999999999999999999986 5766664
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCC----ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC-C---ChHHH
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW----MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP-L---GTQMS 157 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~-~---G~~~~ 157 (324)
++++++++||+++|+++|+|++||||.+++. +++.++++|.++++++++++.+++||.|+++|. . |.++.
T Consensus 111 --~~l~~vv~GI~~~~n~~GVP~VGGdt~~~~~y~~~plv~vt~vG~v~~~~iv~~~~a~~GD~Ivl~G~~tGrdGi~Ga 188 (601)
T PRK14090 111 --RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGA 188 (601)
T ss_pred --HHHHHHHHHHHHHHHHhCCCEeeEEEEEeCCccCCCceEEEEEEEEcCccccccCCCCCCCEEEEEcCCCCCCCcchH
Confidence 4799999999999999999999999998763 578889999998888888999999999999974 2 33222
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
+.+...+. ......+.-. ..+.+.++. + .+...+.+.+..+++|||+|.|||+.+|+|||..+++|++
T Consensus 189 s~as~~l~-~~~~~~~~vq-~gd~~~ek~----l------~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA~~sg~G~~ 256 (601)
T PRK14090 189 SFASEDLT-GEKATKLSIQ-VGDPFAEKM----L------IEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGGLGAI 256 (601)
T ss_pred HHHHHHhc-CCcccccccc-cCCHHHHHH----H------HHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHHHHhCCeEE
Confidence 11111111 0000000000 112211111 1 1111122333459999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecC
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDS 314 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~ 314 (324)
|+++++|+++.... .|+ + ..+||++||+++|+|++.++|++.+++ ++++||+|++++ ++++..+
T Consensus 257 IdLdkVPl~~~~m~-------p~e--i---l~SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~Vt~~~-~l~~~~~ 323 (601)
T PRK14090 257 VHLDRVPLREPDME-------PWE--I---LISESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEVIDDP-IYRVMYR 323 (601)
T ss_pred EEecccccCcccCC-------HHH--H---HhcCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEEeCCc-eEEEEEC
Confidence 99999998764211 121 1 126788999999999999999999986 789999999765 4555555
Q ss_pred Cce-Eeec
Q psy12424 315 PDI-FHVT 321 (324)
Q Consensus 315 ~~~-~~~~ 321 (324)
++. ++++
T Consensus 324 g~~v~dlp 331 (601)
T PRK14090 324 DDLVMEVP 331 (601)
T ss_pred CeEEEEcc
Confidence 555 3443
No 25
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=284.09 Aligned_cols=268 Identities=26% Similarity=0.362 Sum_probs=229.0
Q ss_pred CCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC-ChhHHhhH
Q psy12424 11 IGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL-TEDERDII 89 (324)
Q Consensus 11 ~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~-~~~~~~~~ 89 (324)
.+||++|.++++ +..++.|+|+|.|++++||+.|+.++++++||++|||++|+.+ +.+++||++. ++ +.
T Consensus 48 ~~dda~vy~ig~-----g~~iIsT~df~mpivddp~dfG~IaAtNaIsDv~amgg~pi~A-iAI~g~~~~~l~~----~i 117 (346)
T COG0709 48 TGDDAAVYDLGN-----GHSIISTTDFFMPIVDDPFDFGRIAATNAISDVFAMGGKPIMA-IAILGFPNDLLDK----EI 117 (346)
T ss_pred ccCcceeEEecC-----CcEEEEecceeeecccCcchhhhhhhcccccchhhcCCcchhh-hhhcCCcccccCH----HH
Confidence 489999999988 6889999999999999999999999999999999999999987 5778999764 44 69
Q ss_pred HHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhhhhh
Q psy12424 90 VPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEK 169 (324)
Q Consensus 90 ~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~~~~ 169 (324)
++++..|=.+.|++.++++.|||+..+|+|..+..++|.++..+..+.+++++|+.|++|+|+|.+...++++-
T Consensus 118 ~~ei~~gg~~~~rea~i~lagGhsIdapEP~fGlav~G~~~~~k~~~n~~a~~G~~lilTKPlG~gil~ta~k~------ 191 (346)
T COG0709 118 AQEVIEGGRDACREAGIALAGGHSIDAPEPIFGLAVTGIVPTGKVKRNSTAKAGCKLILTKPLGIGILTTAEKK------ 191 (346)
T ss_pred HHHHHHhhHHHHHHhCccccCCcccCCCCcccceeeecccchhhhcccccccCCcEEEEecCcccceehhhhhh------
Confidence 99999999999999999999999999999999999999999888888899999999999999999887777641
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhH
Q psy12424 170 LSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPL 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~ 249 (324)
.. +.++ ++..+++.|+++|+...+++...+++||+|||++||+++++|||+.+++++++....+|..+..
T Consensus 192 -~~-----L~~e----~~~~ale~M~~lN~~~~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf~~~ip~l~~~ 261 (346)
T COG0709 192 -GL-----LKEE----HKGLALENMCTLNKIGAQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDGV 261 (346)
T ss_pred -hc-----cCHH----HHHHHHHHHhhhhHHHHHhCccCCcceeecccCchHHHHHHHHHhhcCCcEEEeeccCCCcHHH
Confidence 11 3333 4566788999999877788888899999999999999999999999999999999999988877
Q ss_pred HHHhccc-------CC----------c---ccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCC
Q psy12424 250 GVIASRP-------GT----------R---FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGD 306 (324)
Q Consensus 250 ~~~~~~~-------~~----------~---~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~ 306 (324)
..+.+.+ ++ + |...+ -.|++|||++|+.+.++...+..+.+++ +++.||++.+..
T Consensus 262 e~~~~~g~iP~gt~~n~~s~~~~~~~~l~e~~~~l--L~dpqtsgglLiav~~~~~~~~~~i~~e~~~~~~~i~~l~~k~ 339 (346)
T COG0709 262 EFYIENGIIPGGTARNFGSYGIFAGKDLPEEQKLL--LCDPQTSGGLLIAVVPEGKGEGLEIAPELGIQLIIIGELVAKQ 339 (346)
T ss_pred HHHHHcCCCcCccccchhHHHHhccccccHHHHHH--hcCCCCCCceEEEEecccccchheecchhccceehhhhHHhhc
Confidence 7766543 00 0 11111 2689999999999999887777776666 788899987643
No 26
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=6.3e-37 Score=314.16 Aligned_cols=275 Identities=18% Similarity=0.138 Sum_probs=195.6
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
..+++||||||++++.. ....+++|+|.++.+. .+||++||++|++|+|||+||||+|+++ +++++++.+.++ +
T Consensus 412 ~~~~pgdDaaVi~~~~~---~~~glv~t~D~~~~~~~~~P~~~g~~aV~~~vsDiaa~Ga~P~~~-~~~l~~g~p~~~-~ 486 (715)
T TIGR01736 412 TVVKPGEDAAVLRIKET---GKLGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLAAVGAEPLAA-VDCLNFGNPERP-E 486 (715)
T ss_pred eEeccCCceEEEEecCC---CceEEEEEecCCCCchhcCHHHHHHHHHHHHHHHHhhcCCeehhh-eeeeccCCCCCh-h
Confidence 44689999999998751 0123999999976653 7999999999999999999999999987 577777433222 3
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeC-CcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSS-EEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
.+|.+.++++|++++|+++|++++||||+.+++ |++.++++|.+++ ++.++++.+++||.|+++|..|.+..
T Consensus 487 ~~~~l~~~~~gi~~~~~~~gv~ivGG~ts~~~~~~~~~i~pt~~v~~~G~~~~~~~~i~~~~a~~Gd~i~l~g~~g~~~~ 566 (715)
T TIGR01736 487 VYWQFVEAVKGLGDACRALGTPVVGGNVSLYNETNGVPIAPTPTIGMVGLVEDVEKLLTSNFKKEGDAIYLIGETKDELG 566 (715)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeeccccCCCCCCCcceEEEEEeccChhhccCcccCCCCCEEEEEeCCCCCcc
Confidence 456799999999999999999999999987532 3667889999987 77889999999999999998775533
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
...+........... .+...++. . ........+++++..++||||+|+|||+++|+|||.++++|++
T Consensus 567 G~~~~~~~~~~~~~~-----~p~~~~~~-----~---~~~~~~i~~l~~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~ 633 (715)
T TIGR01736 567 GSEYLRVIHGIVSGQ-----VPAVDLEE-----E---KELADAVREAIRAGLVSAAHDVSRGGLAVALAEMAAASGIGAE 633 (715)
T ss_pred HHHHHHHhcCCcCCc-----CCCCCHHH-----H---HHHHHHHHHHHHcCCeEEEEeCCcChHHHHHHHHHhCCCceEE
Confidence 221211000000000 11111110 0 1111111234444459999999999999999999999999999
Q ss_pred EEecCCCC-ChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEecCCCcEEEecCCc
Q psy12424 238 FMIHTLPI-LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPD 316 (324)
Q Consensus 238 i~~~~iP~-~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~~~~~~~~l~~~~~ 316 (324)
|+++++|+ .+... +..||+|++|++|+++++.++++...-++.+||+ +.+ +.+.+..+++
T Consensus 634 I~l~~ip~~~~~~~-----------------lfses~g~~v~~v~~~~~~~~l~~~gi~~~vIG~-~~~-~~l~i~~~~~ 694 (715)
T TIGR01736 634 VDIDEIASARPDEL-----------------LFSESNGRAIVAVPEEKAEEAVKSKGVPAKVIGK-TGG-DRLTIKTGDD 694 (715)
T ss_pred EEcCCCcCcchHHH-----------------HhCCCCccEEEEECchHHHHHHHHcCCCEEEEEE-ECC-CeEEEEECCE
Confidence 99999996 22211 1256889999999999876655522228899999 544 3566666554
Q ss_pred eE
Q psy12424 317 IF 318 (324)
Q Consensus 317 ~~ 318 (324)
.+
T Consensus 695 ~~ 696 (715)
T TIGR01736 695 TI 696 (715)
T ss_pred EE
Confidence 33
No 27
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=4.1e-37 Score=315.32 Aligned_cols=276 Identities=14% Similarity=0.080 Sum_probs=195.8
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
..+++||||||+++++. +..+++|+|++++++ .+||++||+||++|+|||+||||+|+++ ++++++|.+..+ +
T Consensus 422 tv~~pGdDaAVi~~~~~----~~~l~~s~D~~~~~~~~~P~~~g~~AV~~avsdiaa~Ga~P~~~-~~~l~~~~p~~~-~ 495 (724)
T PRK01213 422 TVVKPGGDAAVLRIRGG----GKGLALTTDCNPRYVYLDPYEGAKLAVAEAARNLAAVGATPLAI-TDCLNFGNPEKP-E 495 (724)
T ss_pred ccccCCCCeEEEEecCC----CEEEEEEecCCCCccccCHHHHHHHHHHHHHHHHhccCCeehhh-eeeeecCCCCch-H
Confidence 44678999999998742 467999999987664 6999999999999999999999999986 687888765443 3
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCCCCC-CCCCEEEEeCCCChHHH
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMPNQA-QPGDVIILTKPLGTQMS 157 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~~~a-~~GD~Ii~tg~~G~~~~ 157 (324)
.+|++.++++|++++|++||+|++||||+.+++ |++.++++|.+++.+.+.+..+ ++||.|+++|..|.+..
T Consensus 496 ~~~~l~~~~~Gi~~a~~~~gvpivGG~~s~~n~~~~~~i~pt~~vt~vG~~~~~~~~~~~~~k~~GD~I~l~g~~~~~~g 575 (724)
T PRK01213 496 VMWQFVEAVRGLADACRALGTPVVGGNVSLYNETGGTAIYPTPVIGMVGLIDDVSKRTTSGFKKEGDLIYLLGETKDELG 575 (724)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeeeCCCCCcccCCcceEEEEEEecCHhhCcChhcCCCCCEEEEEcCCCCCcc
Confidence 456799999999999999999999999987543 3667889999976444555555 99999999997764432
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
...+.+... +.. ... .+...+.. . .........++++..++||||+|+|||+.+|.||+.++++|++
T Consensus 576 gs~~~~~~~-~~~---~~~-~p~~~~~~--~------~~~~~~l~~l~~~g~v~a~~DvSdGGL~~aL~ema~as~~G~~ 642 (724)
T PRK01213 576 GSEYLKVIH-GHV---GGR-PPKVDLEA--E------KRLQELVREAIREGLVTSAHDVSEGGLAVALAEMAIAGGLGAE 642 (724)
T ss_pred HHHHHHHhc-CCc---CCC-CCCCCHHH--H------HHHHHHHHHHHHCCCeEEEEeCCcCcHHHHHHHHHhcCCceEE
Confidence 122222110 010 000 11111110 0 1111111223444449999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecC
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDS 314 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~ 314 (324)
|+++. +..+... | ..|++|++|++|++++.+++++.++. ++++||+|++ +.+.+..+
T Consensus 643 I~l~~-~~~~~~~-------------L----f~e~~g~~v~~V~~~~~~~v~~~l~~~gi~~~~IG~v~~--~~l~i~~~ 702 (724)
T PRK01213 643 VDLSD-GLRPDAL-------------L----FSESQGRYVVSVPPENEEAFEALAEAAGVPATRIGVVGG--DALKVKGN 702 (724)
T ss_pred EEeCC-CCChHHH-------------h----hCCCCceEEEEEchhHHHHHHHHHHHCCCCeEEEEEEcC--CEEEEecC
Confidence 99873 2222111 1 13567889999999999999998876 7899999975 45665443
Q ss_pred CceEeecc
Q psy12424 315 PDIFHVTL 322 (324)
Q Consensus 315 ~~~~~~~~ 322 (324)
..+.+.+
T Consensus 703 -~~~~~~~ 709 (724)
T PRK01213 703 -DTESLEE 709 (724)
T ss_pred -CcccHHH
Confidence 3334433
No 28
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=1e-37 Score=319.94 Aligned_cols=280 Identities=12% Similarity=0.164 Sum_probs=201.8
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
+++||||||+++++ +..++++++. +.|...+||++||+++..|+|||+||||+|+++ ++.+++|+..++ ...
T Consensus 54 ~g~gDDaavi~~~~-----~~~lv~~~e~h~~p~~~~P~~~a~~~v~~~vsDi~amGa~P~~~-~~~l~~~~~~~~-~~~ 126 (715)
T TIGR01736 54 QGPGEDAGVVDIGD-----GYAVVFKMESHNHPSAIEPYNGAATGVGGILRDILSMGARPIAL-LDSLRFGPLDDP-KNR 126 (715)
T ss_pred EeeCCceEEEEeCC-----CeEEEEEeccCCCCCCcCCCCchhhcccceecccccCCCeEeeE-EEEeccCCCCCc-chH
Confidence 58999999999987 5778899884 445557999999999999999999999999987 577899753222 233
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccC----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC-CCC---hHHHHH
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNP----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK-PLG---TQMSVT 159 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg-~~G---~~~~~~ 159 (324)
+.++++++|++++|+++|++++||||.+++ ++++.++++|.+++++++++++++|||.|+++| +.| .++...
T Consensus 127 ~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~~~~v~~t~iG~~~~~~~~~~~~a~~GD~Iv~~G~~~G~~g~gg~~~ 206 (715)
T TIGR01736 127 YLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGNKLVLVGGKTGRDGIGGATF 206 (715)
T ss_pred HHHHHHHHHHHHhccccCCCccceEEEEecCcCCCCeEEEEEEEEEchHHcccCCCCCCCCEEEEeCCCCCcCCccHHHH
Confidence 579999999999999999999999998654 367899999999888888999999999999998 543 333211
Q ss_pred HHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424 160 IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~ 239 (324)
....+................++. + ..+.+....++++..+++|||+|+|||+++|+||+..+++|++|+
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~----~------~~~~~~~~~l~~~~~v~a~~Dis~gGL~~~l~ema~~s~~G~~I~ 276 (715)
T TIGR01736 207 ASEELSEEAEEEDRPAVQVGDPFT----E------KLLIEATLEAVDTGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIY 276 (715)
T ss_pred HHHHhccccccccCcccccCCcHH----H------HHHHHHHHHHhccCCEEEEEEcCCchHHHhHHHHhccCCcEEEEE
Confidence 111111000000000000111110 0 011222233444445999999998899999999999999999999
Q ss_pred ecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCCc
Q psy12424 240 IHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSPD 316 (324)
Q Consensus 240 ~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~~ 316 (324)
++++|+.+.... .++. ++ +|+..+++|+|++++++++++.+++ ++++||+|++++ .+.+..+++
T Consensus 277 l~~iP~~~~~~~-------~~e~-~~----se~qe~ll~~v~~~~~~~~~~~~~~~g~~~~vIG~v~~~~-~~~v~~~g~ 343 (715)
T TIGR01736 277 LDKVPLREPGMT-------PYEI-ML----SESQERMLLVVAPEDVEEVLEIFEKYELPASVIGEVTDEG-RIRLYYKGE 343 (715)
T ss_pred cccCccCCCCCC-------HHHH-HH----hcccceEEEEEChhhHHHHHHHHHHcCCCEEEEEEEecCC-eEEEEECCc
Confidence 999998764110 1111 11 2344579999999999999998876 899999999764 566666665
Q ss_pred eE
Q psy12424 317 IF 318 (324)
Q Consensus 317 ~~ 318 (324)
++
T Consensus 344 ~~ 345 (715)
T TIGR01736 344 VV 345 (715)
T ss_pred eE
Confidence 53
No 29
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=8.9e-36 Score=305.45 Aligned_cols=278 Identities=12% Similarity=0.161 Sum_probs=198.2
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeec-CCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTD-FFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D-~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
+++||||||+++++ +..++++++ +|+|...+||.+|++++..++|||+||||+|+++ ++++++|+..++ ...
T Consensus 66 ~g~gdDaavi~~~~-----~~~lv~~~Esh~~p~~~~P~~ga~~~v~~~i~Di~amGa~P~a~-~~~l~~~~~~~~-~~~ 138 (724)
T PRK01213 66 QGPGENAGVVDIGD-----GQAVVFKIESHNHPSAVEPYQGAATGVGGILRDIFSMGARPIAL-LDSLRFGELDHP-KTR 138 (724)
T ss_pred EeeCCCceEEEcCC-----CcEEEEEeccCCCCCccCCccchhhcccceeccccccCceeeee-eeEEEccCCCCC-cHH
Confidence 48899999999987 567888876 4556667999999999999999999999999987 577899854211 233
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccC----CceEeEEEEEeeeCCcccCCCCC-CCCCEEEEeCC----CChHHHH
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNP----WMTIGGVVTSVCSSEEFVMPNQA-QPGDVIILTKP----LGTQMSV 158 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~----~~~i~~t~iG~~~~~~~~~~~~a-~~GD~Ii~tg~----~G~~~~~ 158 (324)
+.++++++|+.++|+++|+|++||||.+++ .+.+.++++|.++++++ .++++ +|||.|+++|. .|.++..
T Consensus 139 ~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~~p~v~~~~iG~~~~~~~-~r~~~~~~Gd~Ii~~G~~tg~~Gigg~~ 217 (724)
T PRK01213 139 YLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNGNPLVNAMCVGLVRHDDI-VLAKASGVGNPVVYVGAKTGRDGIGGAS 217 (724)
T ss_pred HHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCCCceEEEEEEEEEcHHHc-ccCCCCCCCCEEEEeCCCcCcccCcHHH
Confidence 689999999999999999999999998753 36788999999987764 45555 59999999765 3444332
Q ss_pred HHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEE
Q psy12424 159 TIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNF 238 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i 238 (324)
.+...+........ ...++..++.++ .+.....++++...+++|||+|+|||.++++||+..+++|++|
T Consensus 218 ~~s~~~~~~~~~~~-~~vq~g~~~~~~----------~l~~~~~~~~~~~~v~a~~D~g~gGL~~al~Ema~~s~~G~~I 286 (724)
T PRK01213 218 FASAELSEESEEKR-PAVQVGDPFMEK----------LLIEACLELIKTGLVVGIQDMGAAGLTCSSSEMAAKGGLGIEL 286 (724)
T ss_pred HHHhhhhccccccC-cccccCCcHHHH----------HHHHHHHHHhccCCEEEEEECCCCcHHHhHHHHhccCCcEEEE
Confidence 11111110000000 000011111110 0111112344444599999999999999999999999999999
Q ss_pred EecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCC
Q psy12424 239 MIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSP 315 (324)
Q Consensus 239 ~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~ 315 (324)
+++++|+.+.... .|+. ++ +|+..+|+++|+|++.+++++.+++ ++++||+|++++ ++++..++
T Consensus 287 ~ld~iP~~~~~~~-------p~ei-~~----sesqerml~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~~~-~~~~~~~g 353 (724)
T PRK01213 287 DLDKVPLREEGMT-------PYEI-ML----SESQERMLLVVKPGKEEEVLAIFEKWDLDAAVIGEVTDDG-RLRVYHHG 353 (724)
T ss_pred EcccccccCCCCC-------HHHH-Hh----ccccceEEEEECHHHHHHHHHHHHHcCCCEEEEEEEecCC-eEEEEECC
Confidence 9999998763110 1221 11 2344589999999999999998876 899999999864 56666666
Q ss_pred ceE
Q psy12424 316 DIF 318 (324)
Q Consensus 316 ~~~ 318 (324)
+++
T Consensus 354 ~~v 356 (724)
T PRK01213 354 EVV 356 (724)
T ss_pred eEE
Confidence 553
No 30
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=2.2e-35 Score=269.75 Aligned_cols=244 Identities=14% Similarity=0.041 Sum_probs=177.6
Q ss_pred eEEEeecCCCCc-cCChhhHHHHHHHHhhhHHHhcC--cchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCC
Q psy12424 30 YLIQSTDFFYPL-VTHPHIMGAIACANVLSDIYAVG--VTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGV 106 (324)
Q Consensus 30 ~lv~t~D~~~~~-~~~p~~~G~~av~~~~sDi~a~G--a~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~ 106 (324)
.+++++|..+.. ..+||++||++|+.|+|||+||| ++|+++ ++++++|...+. ..+++.++++|++++|+++|+
T Consensus 2 ~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~~a~P~~~-~~~l~~~~~~p~--~~~~l~~~~~gi~~a~~~~g~ 78 (272)
T cd02193 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIAL-SANWMASAGHPG--EDAILYDAVKGVAELCNQLGL 78 (272)
T ss_pred ccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCCCccceEE-eeecccCCCCCC--HHHHHHHHHHHHHHHhHhhCC
Confidence 478999987665 57999999999999999999999 999987 577899843221 226899999999999999999
Q ss_pred eeeCccccccCC---------------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC----CCChHHHHHHHHhhh-h
Q psy12424 107 NISKVAVKLNPW---------------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK----PLGTQMSVTIRSWLK-N 166 (324)
Q Consensus 107 ~ivGGdt~~~~~---------------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg----~~G~~~~~~~~~~~~-~ 166 (324)
|++||||+.++. |++.+|++|.+++.+.+.+..++|||.|+++| +.|.+++ ++.... .
T Consensus 79 pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~~~~~~~~~~~~Gd~I~~~g~~~~~~g~~Gs--~~~~~~~~ 156 (272)
T cd02193 79 PIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGT--ALASVALS 156 (272)
T ss_pred cccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecCcceecccCCCCCCEEEEECCCCCCCccchH--HHHhhhhh
Confidence 999999998753 58889999999876666778899999999997 3454443 322210 0
Q ss_pred hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCC
Q psy12424 167 EEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPIL 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~ 246 (324)
........ .+...... .. + +......++++..+++|||+|+|||+.+|+||+..+++|++|+++++|+.
T Consensus 157 ~~~~~~~~---~~~~~~~~-~~---~----~~~~~~~~~~~g~i~a~hDvs~GGL~~aL~Ema~~s~~G~~i~l~~ip~~ 225 (272)
T cd02193 157 YRQLGDKS---AQVRDPAQ-EK---G----FYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDD 225 (272)
T ss_pred hcccCCCC---CCCCCHHH-HH---H----HHHHHHHHHHCCCEEEEeeCCcchHHHHHHHHHhcCCCEEEEEeCCCcCC
Confidence 00000000 11111110 01 0 11111123444459999999999999999999999999999999999987
Q ss_pred hhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEE
Q psy12424 247 YPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGK 301 (324)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~ 301 (324)
+.... .+.. + .+|+.+++|++|+|++.+++++.+++ ++.+||+
T Consensus 226 ~~~~~-------p~~~-~----~ses~~~~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 226 EPDME-------PLEI-A----LFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred CCCCC-------HHHH-H----HhhhccCeEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 53110 0111 1 14567789999999999999999987 7888995
No 31
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=260.00 Aligned_cols=253 Identities=18% Similarity=0.245 Sum_probs=185.3
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCC-cc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHH
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP-LV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDER 86 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~-~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~ 86 (324)
+..|||||||+.++ ..|+++.|+..+ +. .||++.||++|.+|++||+|||++|+++ ++.+..++ .
T Consensus 40 l~~GDDAavI~v~~------~~lliaadGi~g~l~~~dPw~aG~csvLVn~~DV~amGG~Pv~~-vd~isa~s---~--- 106 (324)
T COG2144 40 LDFGDDAAVIRVGD------GKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMGGEPVGA-VDAISAKS---E--- 106 (324)
T ss_pred cccCCceEEEeeCC------cEEEEecCCccccccccCchhhhceeEEEeehhhhhhCCcceEE-EEeeecCC---H---
Confidence 57799999999885 589999998543 22 4999999999999999999999999986 68654432 2
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCCc-eEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhh
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPWM-TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLK 165 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~-~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~ 165 (324)
++.+++++||++.++++|+|++||||.-.-.. .+.+++.|.+.++.+++..+|+|||.|++.+.+-.... -.
T Consensus 107 -d~~~ei~eglr~~a~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d~~g~~~----p~-- 179 (324)
T COG2144 107 -DQAREILEGLRKGARKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGKPY----PN-- 179 (324)
T ss_pred -HHHHHHHHHHHHHHHhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEeccCCCcC----CC--
Confidence 58999999999999999999999999766444 44555566666677788899999999999987422110 00
Q ss_pred hhhhhhhhhcccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCC
Q psy12424 166 NEEKLSFLKSIKV-DSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLP 244 (324)
Q Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP 244 (324)
.+-+|.. +.. .++. +...+ .+.++ .+. .++|+.|+|.||++++|.+|++.|++|+.++++++|
T Consensus 180 ~P~~wDt---tt~ka~~~----~~~~~----e~l~e---~a~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP 243 (324)
T COG2144 180 FPLNWDT---TTMKAKEK----FRAQL----ELLRE---GAK--LVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIP 243 (324)
T ss_pred CCccccc---eeeccHHH----HHHHH----HHHHH---HHH--HHhhcccccCccHHHHHHHHHHhhccCceeeecccC
Confidence 0111211 001 1111 11111 11112 222 489999999999999999999999999999999999
Q ss_pred CChh--HHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEec
Q psy12424 245 ILYP--LGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKD 313 (324)
Q Consensus 245 ~~~~--~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~ 313 (324)
.+.+ ...|... |.| .+++++++|++++++.+.+.+ ++++||+|.+++ .+++..
T Consensus 244 ~p~~vd~~~wlk~---------ypg------~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~-~L~i~~ 301 (324)
T COG2144 244 YPADVDFRQWLKR---------YPG------SGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEP-VLRIGD 301 (324)
T ss_pred CcccccHHHHHHh---------CCC------CcEEEEeCHHHHHHHHHHHHHcCCceEEEEEeccCc-eEEEec
Confidence 8774 3334331 222 259999999999999998887 899999999875 455544
No 32
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-33 Score=252.63 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=209.5
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
-++|.-+++++++.. +..+.|+.+||+.... ......+|.++|++|+||++|.||+|+++ +++++. .+.+
T Consensus 37 gglGgf~~lf~l~~~--~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiGID~VAM~VNDlv~~GAePl~f-lDY~A~-gk~~ 112 (345)
T COG0150 37 GGLGGFAGLFDLGQA--YYKPVLVSGTDGVGTKLLLAEDAGKHDTIGIDLVAMCVNDLVVQGAEPLFF-LDYLAT-GKLD 112 (345)
T ss_pred cCCcceeEEEEccCC--CccceEEecCCCchHHHHHHHHhCCccccccchheeecchhhhcCcchHHH-Hhhhhc-CCCC
Confidence 477889999999751 1136899999987653 34667899999999999999999999986 799988 4456
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCc------eEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWM------TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~------~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ +..+++++|+.+.|++.||.++||+|.+.|+. -+.++++|.++++++++.+.+++||+|+...+.|.
T Consensus 113 ~----~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~~GDviigl~SSG~-- 186 (345)
T COG0150 113 P----EVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLASSGL-- 186 (345)
T ss_pred H----HHHHHHHHHHHHHHHHhCCEEeccccccCCCcccCCceeeeeeEEEEEEccccccccccCCCCEEEEecCCCc--
Confidence 6 58899999999999999999999999999874 56688999999999999999999999999887544
Q ss_pred HHHHHHhhhhh---hhhhhhhcccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCeEeeccCCccccchhHHhh
Q psy12424 157 SVTIRSWLKNE---EKLSFLKSIKVDSAMLKQCVNSAITLMATINK----KAAILMKKYNAHACTDVTGYGLTGHATNLV 229 (324)
Q Consensus 157 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~GGL~~~L~~la 229 (324)
|+|+|+..+.- ..+..... .+.. ..+ +..+.+..|.+ ....++++..||+|.|||+|||..++.++.
T Consensus 187 HSNGySLvRKi~~~~~~~~~~~--~~~~-~g~---~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~eNl~Rv~ 260 (345)
T COG0150 187 HSNGYSLVRKIIEESGLDYDDE--LPEE-LGK---TLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGFVENLPRVL 260 (345)
T ss_pred CCCchHHHHHHHHhcCcccccc--Cccc-ccc---CHHHHhcCCceeehHHHHHHHhcCCcceEEEecCCChhhhChhhc
Confidence 56777665310 00100000 1110 000 12223333322 345677777899999999999999999987
Q ss_pred hhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCC
Q psy12424 230 KYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGD 306 (324)
Q Consensus 230 ~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~ 306 (324)
..+++++|+...+|++ .++.|.+..++--.++|++-|++ +-||+++|++++++++++.++. ++|+||+|.++.
T Consensus 261 -p~~l~a~id~~~~~~p-~iF~~i~~~G~v~~~EM~rtFNm--GvG~v~iv~~e~~~~~~~~l~~~g~~a~~iG~V~~~~ 336 (345)
T COG0150 261 -PEGLGAVIDKPSWPPP-PIFKWLQKAGNVEREEMYRTFNM--GVGMVLIVPEEDAEKALALLKEQGETAYVIGRVEAGE 336 (345)
T ss_pred -CccceEEEcCCCCCCc-HHHHHHHHhcCCCHHHHHHHhcC--ccceEEEEcHHHHHHHHHHHHhcCCceEEEEEEEeCC
Confidence 4578999998887654 46666665554333446666653 4589999999999999999987 799999999864
Q ss_pred C
Q psy12424 307 R 307 (324)
Q Consensus 307 ~ 307 (324)
+
T Consensus 337 ~ 337 (345)
T COG0150 337 G 337 (345)
T ss_pred C
Confidence 3
No 33
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.3e-27 Score=237.01 Aligned_cols=260 Identities=15% Similarity=0.050 Sum_probs=188.7
Q ss_pred CCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhh
Q psy12424 10 EIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDI 88 (324)
Q Consensus 10 ~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~ 88 (324)
|++.||||+++... ...+..+++|+|+++++. .|||..|+.||++++++|+|+||+|+.+ ++++++.++-.+ +.+|
T Consensus 445 G~~~DaaV~r~~~~-~~~~~g~A~t~~~np~~~~ldpy~Ga~~aVaEa~rNl~a~Ga~pla~-~d~lnfg~pe~p-E~~~ 521 (743)
T COG0046 445 GPVADAAVLRISED-SGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGAKPLAL-TDNLNFGNPEKP-EVMG 521 (743)
T ss_pred CCCcceEEEEeccc-CCCcceEEEEcCCCCcceEEChhHHHHHHHHHHHHHHHhhCCcchhh-hhhhccCCCCCh-hhhh
Confidence 33499999998741 001236999999999885 6999999999999999999999999986 799999765555 7999
Q ss_pred HHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeC-CcccCCCCCCCCCEEEEeCC----CChHH
Q psy12424 89 IVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSS-EEFVMPNQAQPGDVIILTKP----LGTQM 156 (324)
Q Consensus 89 ~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~tg~----~G~~~ 156 (324)
++.+.++|+.++|+.+|+|++||+.+.|.+ |++.+.++|.+++ .+.++....+.||.||+.|. +|.+.
T Consensus 522 q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~~i~PTpvi~~vg~v~dv~k~~~~~~~~~g~~i~llG~~~~~lggS~ 601 (743)
T COG0046 522 QFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPPTPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELGGSE 601 (743)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeeeeeccCCcccCCcceEEEEEEeechhhhcCccccCCCcEEEEeCCCccccchhH
Confidence 999999999999999999999999999864 3677788999986 66777766789999999985 56554
Q ss_pred HHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeE
Q psy12424 157 SVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSV 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~ 236 (324)
+...++. .. .+. .+..+++. . .........++++..++++||+|+|||+.+|.||+.++++|+
T Consensus 602 ~~~~~~~-----~~---~g~-~p~~dl~~--e------k~~~~~i~~~i~~~~v~aahD~s~GGL~~aLaemaf~~~~G~ 664 (743)
T COG0046 602 LAQVYHG-----LG---DGP-PPVVDLAE--E------KKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGL 664 (743)
T ss_pred HHHHHhc-----cc---CCC-CCCCCHHH--H------HHHHHHHHHHHhcCceEEEEEcccccHHHHHHHHHhccCCce
Confidence 4322211 11 110 22211111 1 111111134555556999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-ccceEEEEecC
Q psy12424 237 NFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-LAWIIGKVTPG 305 (324)
Q Consensus 237 ~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-~~~~IG~V~~~ 305 (324)
+|+++.++-..... -++.|+.|+++++++++++......... ++.+||.++..
T Consensus 665 ~i~~~~~~~~~~~~----------------~LFsE~~gr~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 718 (743)
T COG0046 665 EIDLDELGDDRLDA----------------LLFSESLGRVIVVVAEEEAEVEGAEAVGVPLKVIGLVGGD 718 (743)
T ss_pred EEEcccccccchhh----------------HhhCcCCCcEEEEecchhhhhhhhhhcCceeeeeeecccc
Confidence 99988765331110 0235678899999998876522111112 67889988754
No 34
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.4e-26 Score=202.14 Aligned_cols=269 Identities=20% Similarity=0.233 Sum_probs=198.0
Q ss_pred CCCeeEEeCCCCCCCCCceEEEeecCCC-CccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHH
Q psy12424 12 GLDSCIIPLASGRSPSPLYLIQSTDFFY-PLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIV 90 (324)
Q Consensus 12 gdDaavi~~~~~~~~~~~~lv~t~D~~~-~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~ 90 (324)
-||++++++.+ .+++++.|+.+ ++..-||..|+.+..++++|++.|||+|++.+ +-+-+..+-+. ..+
T Consensus 111 ~DDaGvvr~~~------~yivvaiDGiHSRLSefPFLaGFhvtRAalRDv~vmGa~p~ali-sDiHlaDDgDV----gkl 179 (449)
T COG1973 111 LDDAGVVRIEN------DYIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPVALI-SDIHLADDGDV----GKL 179 (449)
T ss_pred cCCCCeEEecC------ceEEEEecchhhhhhcCcchhhhHHHHHHHHHHHHcCcccceee-eeeeeccCcch----hhh
Confidence 48999999986 59999999865 35678999999999999999999999999864 43566554444 578
Q ss_pred HHHHHHHHHHHHHhCCeeeCccccccCC-c------eEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH-HHH-HH
Q psy12424 91 PMLIEGFKAQASVAGVNISKVAVKLNPW-M------TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM-SVT-IR 161 (324)
Q Consensus 91 ~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-~------~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~-~~~-~~ 161 (324)
-.+..|+...|+..|+|+++|.|-+-.. + +-++-++|... .++..|.+++|||+|.+|-..|.+. +.+ .|
T Consensus 180 fDf~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdRl~~~Vg~iGi~k-~~~t~Rr~~~~Gd~IlmTEGaGGGTi~TTAiY 258 (449)
T COG1973 180 FDFTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDRLVGAVGAIGISK-SELTPRRRAEPGDVILMTEGAGGGTIATTAIY 258 (449)
T ss_pred hhhhhhhhHHHHHhCCceecccceEEcCeeEeechhhcccceeeeec-CCCChhccCCCCCEEEEecCCCCceeehhhhh
Confidence 8899999999999999999999877644 2 23344678765 6788899999999999996555443 222 22
Q ss_pred HhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---cCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 162 SWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAI-LMKKY---NAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
.-+.. --++. +.-+++ .+.+ +++.+ .+|||+|+|.|||-++..|+++.+++++.
T Consensus 259 ~Gm~D-Vv~ET-----lnv~fi----------------~a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lv 316 (449)
T COG1973 259 HGMHD-VVEET-----LNVDFI----------------RACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLV 316 (449)
T ss_pred cccHH-HHHHh-----cChHHH----------------HHHHHHHHhhhhhhhhhhhhccCCcccccHHHhhhhcCeeEE
Confidence 11100 00000 111111 1111 11221 39999999999999999999999999999
Q ss_pred EEecCCC--CChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEe
Q psy12424 238 FMIHTLP--ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIK 312 (324)
Q Consensus 238 i~~~~iP--~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~ 312 (324)
++.+++- +.|.+.+.++.+.+++- |.. --.|++++|++.++.+.+.++. .+.+||+|.++..++.+.
T Consensus 317 fDeekv~sliNpkVl~MLeel~ID~l-----GvS---iDslmii~ped~a~~v~k~~~~agvr~~~vG~Vee~~~~~~l~ 388 (449)
T COG1973 317 FDEEKVRSLINPKVLKMLEELNIDPL-----GVS---IDSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEGGQGVILV 388 (449)
T ss_pred EcHHHHHhhcCHHHHHHHHHcCCCcc-----ccc---cceEEEecchhhhHHHHHHHHhcCcceeEEeeeecCCcceEEE
Confidence 9988652 45778888777766531 221 1148888999999999999987 788899999976788999
Q ss_pred cCCceEeecc
Q psy12424 313 DSPDIFHVTL 322 (324)
Q Consensus 313 ~~~~~~~~~~ 322 (324)
.++++.|+.+
T Consensus 389 ~~gee~~lkp 398 (449)
T COG1973 389 DGGEERELKP 398 (449)
T ss_pred ECCEeecccc
Confidence 9999987653
No 35
>KOG0237|consensus
Probab=99.93 E-value=4.2e-26 Score=216.84 Aligned_cols=279 Identities=16% Similarity=0.146 Sum_probs=201.0
Q ss_pred CCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc------CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCCh
Q psy12424 10 EIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV------THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTE 83 (324)
Q Consensus 10 ~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~------~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~ 83 (324)
++|--.++++++.. ..+++.|+..||+..... .....+|...|++|+|||.+.||+|+++ ++++.. .+++.
T Consensus 471 diGGFgglfdLk~a-g~~d~~Lv~~tdGVGtKl~iA~~~~~hdtvG~DlvAm~vNDii~~gAePl~F-LDYfa~-gkLd~ 547 (788)
T KOG0237|consen 471 DIGGFGGLFDLKQA-GFKDPLLVSGTDGVGTKLKIAQETNIHDTVGIDLVAMNVNDIIVQGAEPLFF-LDYFAT-GKLDV 547 (788)
T ss_pred cccccceeeehhhc-CCCCceEEEeccCccceeehhhhhCcccccceeeeeeehhhHhhcCCcceee-hhhhhh-cccch
Confidence 46677788887541 123688999999876532 3566799999999999999999999986 799887 45666
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCc------eEeEEEEEeeeCCcccCC-CCCCCCCEEEEeCCCChHH
Q psy12424 84 DERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWM------TIGGVVTSVCSSEEFVMP-NQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 84 ~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~------~i~~t~iG~~~~~~~~~~-~~a~~GD~Ii~tg~~G~~~ 156 (324)
...+++++||.++|++.+|.++||+|++.|.+ -+.++++|.+++..+++. +.+++||+|+-..+. +.
T Consensus 548 ----~va~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~Ss--Gv 621 (788)
T KOG0237|consen 548 ----SVAEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSS--GV 621 (788)
T ss_pred ----HHHHHHHHHHHHHHhhccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEecccc--cc
Confidence 58889999999999999999999999999874 566789999987665555 669999999877654 34
Q ss_pred HHHHHHhhhhhhhhhhh--hcccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCeEeeccCCccccchhHHhhh
Q psy12424 157 SVTIRSWLKNEEKLSFL--KSIKVDSAMLKQCVNSAITLMATIN----KKAAILMKKYNAHACTDVTGYGLTGHATNLVK 230 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~ 230 (324)
++|+|+..+.--....+ ..- .+.+.- ..+. +.+..+. +....++++.+++++.|||+|||.-+..++..
T Consensus 622 HSNGfSLvrkil~~~~l~~~~~-~P~~~~-~tlG---d~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRvlp 696 (788)
T KOG0237|consen 622 HSNGFSLVRKILARSGLSYKDP-LPWDSS-KTLG---DELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRVLP 696 (788)
T ss_pred ccCcHHHHHHHHHhcCCccCCC-CCCCcc-cchh---hhhccccEEehhhhHHHHHhcccceeeeecCCCccccchhhcc
Confidence 56677654310000000 000 111110 0111 1122222 23356778888999999999999999999984
Q ss_pred hCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCC
Q psy12424 231 YQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGD 306 (324)
Q Consensus 231 ~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~ 306 (324)
+++++.||.+.|-+++ ++.|.+.-|+.....|...|+ .+-+++++|+||+++++++.+++ .+|+||+|+.++
T Consensus 697 -~~l~~~id~~twe~p~-vF~Wl~~aG~v~~~em~RTfN--~GiGmVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~r~ 771 (788)
T KOG0237|consen 697 -DHLGAVIDADTWELPP-VFKWLQQAGNVPDSEMARTFN--CGIGMVLVVSPENVERVLKELTNHGEEAYRIGEVVNRE 771 (788)
T ss_pred -cccceEEecccccCcH-HHHHHHHcCCCCHHHHHHHhc--cccceEEEEcHHHHHHHHHHHhhCCeEEEEEEeEeecC
Confidence 7899999999987655 566655555433323434443 24489999999999999999996 799999998654
No 36
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.93 E-value=1.4e-25 Score=222.46 Aligned_cols=282 Identities=13% Similarity=0.168 Sum_probs=207.6
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDER 86 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~ 86 (324)
..|+||||+++++++ +..+++.+.+ ++|...+||..+...+-.-+||+.||||+|+++ ++.|.|... +.+..
T Consensus 79 i~g~gdnAgvvdi~d-----~~~v~fKvESHNHPSaIePy~GAATGvGGiIRDv~smGArPiA~-l~~l~fG~~-~~~~~ 151 (743)
T COG0046 79 LSGPGDNAGVVDIGD-----GWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIAL-LDSLRFGIP-DIEKT 151 (743)
T ss_pred EEcccCCcceEEeCC-----cEEEEEEeccCCCCCccCCCCCcccccCceeecccccCceeeee-ecccccCCC-CCchh
Confidence 358999999999998 6778888774 778888999999999999999999999999986 688888532 22234
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCC----ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC----CChHHHH
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPW----MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP----LGTQMSV 158 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~----~G~~~~~ 158 (324)
.+.+..++.|++..-+++|+|-+||.+.+.+. |.+.+.++|.++++++.+....+|||.|++.|. .|.++..
T Consensus 152 ~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y~~npLvna~~vG~i~~~~i~~~~a~~~G~~li~~Gg~TgrDGigGat 231 (743)
T COG0046 152 RYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCVGLIRKEHIVKGEAIGPGDKLILLGGKTGRDGIGGAT 231 (743)
T ss_pred hhHHhccccchhhcCccccccccceEEEEccccCCCceEEEEEeeecchhheeeccCCCCCCEEEEEcCCccccccCchh
Confidence 57888999999999999999999999988865 567777899999888777777899999999763 3444332
Q ss_pred HHHHhhh-hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 159 TIRSWLK-NEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
.+..-+- ..... .....++..++.++.+ .+...+......|.+++|+..|||..++.||+...+.|++
T Consensus 232 ~aS~~~~~~~~e~-dr~aVQvGdPf~Ek~l----------~ea~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~ 300 (743)
T COG0046 232 FASMELGEESEEE-DRPSVQVGDPFMEKRL----------QEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAE 300 (743)
T ss_pred hhhhhhCcchhhh-cCCccccCChHHHHHH----------HHHHHHHHhcCCeEEEeccCCchhhhhHHHHHhccCCeEE
Confidence 2222111 00010 0011112233222211 1111223333349999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEec
Q psy12424 238 FMIHTLPILYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKD 313 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~ 313 (324)
|+++++|++.. ++. |+- |+ .||.-|++++|.|++.++|++.+++ ++.+||+||+++ .+++..
T Consensus 301 i~Ld~VP~rE~--------gMsp~Ei-~~----SESQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~vT~~~-~~~~~~ 366 (743)
T COG0046 301 IDLDKVPLREP--------GMSPYEI-WL----SESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEP-RLVVDW 366 (743)
T ss_pred EEhhcCcccCC--------CCCHHHH-HH----hccchheEEEEccccHHHHHHHHHHcCCCeEEEEEEecCc-eEEEEE
Confidence 99999998653 111 111 11 4667799999999999999999988 899999999884 566666
Q ss_pred CCce-Eeec
Q psy12424 314 SPDI-FHVT 321 (324)
Q Consensus 314 ~~~~-~~~~ 321 (324)
+++. ++++
T Consensus 367 ~ge~v~dlP 375 (743)
T COG0046 367 KGEPVVDLP 375 (743)
T ss_pred CCCEEEecc
Confidence 6666 5654
No 37
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.93 E-value=9.9e-25 Score=231.39 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=178.6
Q ss_pred ceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCc---chhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHh
Q psy12424 29 LYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGV---TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVA 104 (324)
Q Consensus 29 ~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga---~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~ 104 (324)
..++++++..+++. .||+.+++.+|++++++|+|.|+ +|+.+ ++.+++|...+ .++++.+.+++++++|+++
T Consensus 593 ~G~a~a~Ge~p~~~~~DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi~l-t~n~~~P~~~~---~~~~L~~av~ai~e~C~~L 668 (1202)
T TIGR01739 593 SCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPWNTLEDVII-TLSVTWSPTDH---VYSLLKDALRACKDFCEEL 668 (1202)
T ss_pred eEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHHhCCccccCCcEE-EEEecCCCCCc---hHHHHHHHHHHHHHHHHHc
Confidence 57899999877764 69999999999999999999998 99986 56789987543 3589999999999999999
Q ss_pred CCeeeCccccccCC--------ceEeEEEEEeeeC-CcccCCCCCCCCCEEEEeCC---CChHHHHHHHHhhhhhhhhhh
Q psy12424 105 GVNISKVAVKLNPW--------MTIGGVVTSVCSS-EEFVMPNQAQPGDVIILTKP---LGTQMSVTIRSWLKNEEKLSF 172 (324)
Q Consensus 105 g~~ivGGdt~~~~~--------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~tg~---~G~~~~~~~~~~~~~~~~~~~ 172 (324)
|++|++|+++.+.+ +++.+++++.++. .+.++....++||.|++++. .+.+++ .|..+.. .....
T Consensus 669 gipiv~G~~S~s~~~~~v~~Ptptivisa~a~v~dv~k~vTp~lk~~G~~L~LIg~t~~~~LgGS--~laq~~~-~~~~~ 745 (1202)
T TIGR01739 669 GVSFTVTSAASSPTQDSGSAPFMSIVFSASCPVLLSAKKITPDLKSHGSHLIWLSLHPSYTLAGS--IFEQILG-LSFIR 745 (1202)
T ss_pred CCcEEeeeccccCCCCCccCCCCeEEEEEEEEecCHHhCcCcccCCCCCEEEEEcCCCCCCchHh--HHHHhhc-cccCC
Confidence 99999999887633 5777777777764 56788888889999998752 222222 2211111 01111
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHH
Q psy12424 173 LKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVI 252 (324)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~ 252 (324)
+. . ++++.+.+ .+ .....++++..|.|+||+|+|||+.+|+|||.++++|++|+++.. ..+...
T Consensus 746 ~P-~-vd~~~lk~----~~-------~~v~~li~~glI~S~HDvSdGGL~~aLaEMA~ag~~G~~Idl~~~-~~p~~~-- 809 (1202)
T TIGR01739 746 LP-A-LSPVSLKK----LL-------SALQTLVKEGVIVSGHDVSDGGLVACVAEMALSGGKGVRITLPHG-TDPLEF-- 809 (1202)
T ss_pred CC-C-CCHHHHHH----HH-------HHHHHHHhcCCEEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCCC-CCHHHH--
Confidence 11 1 23322111 11 111234555569999999999999999999999999999997632 111111
Q ss_pred hcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecC--CCcEEEecCCce
Q psy12424 253 ASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPG--DRSVIIKDSPDI 317 (324)
Q Consensus 253 ~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~--~~~~~l~~~~~~ 317 (324)
...|+.| +|+.|++++.+++++.+++ ++.+||+|++. .+.+.+..+++.
T Consensus 810 ---------------LFSEs~G-~VieV~~~~~~~v~~~l~~~gi~~~vIG~vt~~~~~~~l~I~~~~~~ 863 (1202)
T TIGR01739 810 ---------------LCSETPG-VVIEVDPSSMYAVLQFLRSEGLVFQVIGRVGESGPSPTFSVVHNSTV 863 (1202)
T ss_pred ---------------HhCCCCc-EEEEEchhHHHHHHHHHHHCCCCeEEEEEECCCCCCcEEEEEECCEE
Confidence 1245565 9999999999999999876 78899999862 345666556554
No 38
>PHA03366 FGAM-synthase; Provisional
Probab=99.93 E-value=1.7e-24 Score=230.44 Aligned_cols=250 Identities=14% Similarity=0.134 Sum_probs=176.8
Q ss_pred CceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhh--hcCCCCChhHHhhHHHHHHHHHHHHHHHh
Q psy12424 28 PLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIV--GISTQLTEDERDIIVPMLIEGFKAQASVA 104 (324)
Q Consensus 28 ~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l--~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~ 104 (324)
...+++++|..+++. .||+.+++.||++++++|++.|++|+..+.+++ ++|.. ++.+++|.+.++|++++|+++
T Consensus 688 ~~G~A~siGe~p~~~~lDP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~---p~~~a~L~eav~ai~e~C~~L 764 (1304)
T PHA03366 688 VPGTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPT---DQAASELYRALAACKEFCREL 764 (1304)
T ss_pred CCEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCC---cchHHHHHHHHHHHHHHHHHc
Confidence 467999999887764 799999999999999999999999983334555 55553 246799999999999999999
Q ss_pred CCeeeCccccccCC-----------ceEeEEEEEeeeC-CcccCCCCCCCCCEEEEeCC-----CChHHHHHHHHhhhhh
Q psy12424 105 GVNISKVAVKLNPW-----------MTIGGVVTSVCSS-EEFVMPNQAQPGDVIILTKP-----LGTQMSVTIRSWLKNE 167 (324)
Q Consensus 105 g~~ivGGdt~~~~~-----------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~tg~-----~G~~~~~~~~~~~~~~ 167 (324)
|++|++|+++.+++ +++++++++.+++ .+.++....++||.|++.+. +|.+.....+ .
T Consensus 765 gIpIv~G~~S~yne~~~~~~~i~~pptIvisg~~~~~dv~k~vTp~lk~~G~~L~lIg~~~~~~LgGS~laq~~----~- 839 (1304)
T PHA03366 765 GVNFTFTSASSSPRQDQPPQPGPLFNTIVFTASAPVPSSTPRLTPDLKKPGSALVHLSISPEYTLAGSVFEQIF----G- 839 (1304)
T ss_pred CCCEeeeecccccccCCCCccccCCCeEEEEEEEEccCcccccCcccCCCCCEEEEEeCCCCCCcchhHHHHhh----c-
Confidence 99999999998763 4777777776665 46777777789999999642 3433321111 1
Q ss_pred hhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCCh
Q psy12424 168 EKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILY 247 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~ 247 (324)
..... ++....+. ....+ .....++++..|.|+||+|+|||+.+|.|||.++++|++|+++. ...+
T Consensus 840 ~~g~~-----~P~vd~~~-lk~~f-------~~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Idl~~-~~d~ 905 (1304)
T PHA03366 840 LKSGT-----LPDISPSY-LKNLF-------RAVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTITVPA-GEDP 905 (1304)
T ss_pred cccCC-----CCCCCHHH-HHHHH-------HHHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC-CCCH
Confidence 11111 22111110 11111 11134566666999999999999999999999999999999743 1111
Q ss_pred hHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCC--cEEEecCCce
Q psy12424 248 PLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDR--SVIIKDSPDI 317 (324)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~--~~~l~~~~~~ 317 (324)
... | ..|+.| +|+.|++++.+++.+.+++ ++.+||+|++++. .+.+..+++.
T Consensus 906 ~~~-------------L----FsE~~G-~VveV~~~~~~~v~~~l~~~gi~~~vIG~vt~~~~~~~l~I~~~~~~ 962 (1304)
T PHA03366 906 LQF-------------L----FSETPG-VVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSGPSNTFSVSHNGTV 962 (1304)
T ss_pred HHH-------------H----hCCCCe-EEEEEchhHHHHHHHHHHHCCCCeEEEEEEcCCCceEEEEEEECCEE
Confidence 111 1 134456 9999999999999988876 7889999986532 2666555544
No 39
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.92 E-value=1.9e-24 Score=229.83 Aligned_cols=281 Identities=12% Similarity=0.045 Sum_probs=189.0
Q ss_pred CCCCCCeeEEeCC-------CCC--------CCCCceEEEeecCC-CCccCChhhHHHHHHHHhhhHHHhc--Ccchhhh
Q psy12424 9 IEIGLDSCIIPLA-------SGR--------SPSPLYLIQSTDFF-YPLVTHPHIMGAIACANVLSDIYAV--GVTDIDA 70 (324)
Q Consensus 9 ~~~gdDaavi~~~-------~~~--------~~~~~~lv~t~D~~-~~~~~~p~~~G~~av~~~~sDi~a~--Ga~P~~~ 70 (324)
.+++|+|++|+.. +.+ ...+..+++++++. +|...+||.++..++...+||+.|+ ||+|++.
T Consensus 254 ~~~~dNa~vi~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~k~Ethnhpt~i~Py~GAatgvgg~iRD~~a~GrGa~PiA~ 333 (1310)
T TIGR01735 254 SAYKDNSSVIEGHKVGRLRPDPPTRPEYRQHQEDLVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPKAG 333 (1310)
T ss_pred EEecCcEEEEEcccccccccccccccccccccccceEEEEEeccCCCCCccCchhhHHHHHhHhHhChhhhCCCCeeeee
Confidence 3678999999854 000 00135789999974 4556899999999999999999999 9999986
Q ss_pred hHhhhhcCCCC-----C-------hhHHhhH----HHHHHHHHHHHHHHhCCeeeCccccccC--------------Cce
Q psy12424 71 LQMIVGISTQL-----T-------EDERDII----VPMLIEGFKAQASVAGVNISKVAVKLNP--------------WMT 120 (324)
Q Consensus 71 ~l~~l~~p~~~-----~-------~~~~~~~----~~~i~~Gi~~a~~~~g~~ivGGdt~~~~--------------~~~ 120 (324)
++++++.+.- . ..+.+++ +.+.++|++++|+++|+|+++|+++.+. .|+
T Consensus 334 -~d~l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~Il~e~~~G~~~~gn~~G~P~v~G~vs~f~~~~~~~~g~~~~~~~P~ 412 (1310)
T TIGR01735 334 -LTGFCVSNLNIPGLEQPWEDPFQKPERIASPLDIMIEAPLGAAAFNNEFGRPNLLGYFRTFELKASLPGGQVRGYHKPI 412 (1310)
T ss_pred -eeeeecCCCCCCCCCCccccccCCchhhccHHHHHHHHHHHHHHHhhhhCCcccceeeeeccccccccccccccccCCc
Confidence 7989885420 0 1123444 7788999999999999999999995321 245
Q ss_pred EeEEEEEeeeCCcccCCCCCCCCCEEEEeCCC----ChHHHHHHHHhhhhhhhhhhhhcccCC--hHHHHHHHHHHHHHH
Q psy12424 121 IGGVVTSVCSSEEFVMPNQAQPGDVIILTKPL----GTQMSVTIRSWLKNEEKLSFLKSIKVD--SAMLKQCVNSAITLM 194 (324)
Q Consensus 121 i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 194 (324)
+.+.++|.+++.+ +.+...++||.|++.|.. |.++. .++.+.....-..+....++ ..+.++...
T Consensus 413 ~~~g~vG~i~~~~-~~~~~~~~G~~ivllGg~~~rdglgGs--~~ss~~~g~~~~~~~~~~Vq~gdp~~ek~~~------ 483 (1310)
T TIGR01735 413 MLAGGIGSIDAEH-IQKGEIEPGALLIVLGGPAMLIGLGGG--AASSMVSGTNTADLDFASVQRGNPEMERRCQ------ 483 (1310)
T ss_pred cEEEEEEEechhh-cccCCCCCCCEEEEECCCCCCCCccHH--HHHHHHhCCCcccccCCCCCCCCHHHHHHHH------
Confidence 5566789998765 666678999999998742 33333 22222111000000000011 111111111
Q ss_pred HHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccc
Q psy12424 195 ATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSG 274 (324)
Q Consensus 195 ~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G 274 (324)
++-....+...+..|.++||++.|||..++.||+..+++|++|+++++|.......- ++ + .-.||..
T Consensus 484 -~~i~~~~~~~~~~~i~sihD~gaGGls~al~Ema~~~g~G~~i~L~~vp~~~~~m~~-------~e--i---l~sESQe 550 (1310)
T TIGR01735 484 -EVIDRCWQLGEKNPIISIHDVGAGGLSNALPELIHDGGRGAVIDLRAVPLDDPGLSP-------LE--I---WCNESQE 550 (1310)
T ss_pred -HHHHHHHHcCCCCceEEEeccCccHHHHHHHHHHhcCCceEEEEcCCCcccCCCCCH-------HH--H---hhccccc
Confidence 011110111112249999999999999999999999999999999999975432100 11 1 1256788
Q ss_pred eEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEec
Q psy12424 275 GLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKD 313 (324)
Q Consensus 275 ~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~ 313 (324)
|++++|+|++.++|.+.+++ ++++||+|++++ ++.+..
T Consensus 551 R~vl~v~~~~~~~f~~i~~~~~~~~~vIG~vt~~~-~l~v~~ 591 (1310)
T TIGR01735 551 RYVLLVRAENLEIFTAICERERCPFAVVGTATGDG-RLTLVD 591 (1310)
T ss_pred cEEEEECcccHHHHHHHHHHcCCCEEEEEEECCCc-eEEEEe
Confidence 99999999999999998875 899999999754 455555
No 40
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.92 E-value=1.9e-23 Score=222.23 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=182.6
Q ss_pred CCCCC----CCCeeEEeCCC-CCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhh-hcC-
Q psy12424 7 VRIEI----GLDSCIIPLAS-GRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIV-GIS- 78 (324)
Q Consensus 7 ~~~~~----gdDaavi~~~~-~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l-~~p- 78 (324)
|-+|+ +.||||++++. . ...++.+++..+++. .|||.+|+.||+++++||+|+|+.|+.. +.++ +|.
T Consensus 683 ~~vGp~q~p~aDaaV~~~~~~~----~~G~ama~G~~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~~-i~~s~Nwm~ 757 (1310)
T TIGR01735 683 QMVGPWQTPLADVAVTAASFDT----YTGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLSD-VKLSANWMA 757 (1310)
T ss_pred cCcCCCCCCCcCeEEEEecCCC----ceEEEEEEcCCCCeeccCHHHHHHHHHHHHHhheeecCCcCHHH-ccccccchh
Confidence 44555 89999999853 2 457899999988774 6999999999999999999999999864 3443 321
Q ss_pred -CCCChhHHhhHHHHHHHHHHHHHHHhCCeeeCcccccc--------C-------CceEeEEEEEeeeC-CcccCCCCCC
Q psy12424 79 -TQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLN--------P-------WMTIGGVVTSVCSS-EEFVMPNQAQ 141 (324)
Q Consensus 79 -~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~--------~-------~~~i~~t~iG~~~~-~~~~~~~~a~ 141 (324)
... ++ ..+.+.+.++++.++|+++|++++||+++.| . -+++.++++|.+++ .+.++....+
T Consensus 758 ~~~~-pg-e~~~l~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~ 835 (1310)
T TIGR01735 758 AAGH-PG-EDAALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKH 835 (1310)
T ss_pred hcCC-CC-CHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhcc
Confidence 111 11 1256889999999999999999999999775 1 13567788899875 6678887778
Q ss_pred CC-CE--EEE-eC----CCChHHHHHHHHhhhhhhhhhhhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCeE
Q psy12424 142 PG-DV--IIL-TK----PLGTQMSVTIRSWLKNEEKLSFLKSIKVDS-AMLKQCVNSAITLMATINKKAAILMKKYNAHA 212 (324)
Q Consensus 142 ~G-D~--Ii~-tg----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a 212 (324)
+| |. |++ .+ .+|.+.....+. .. ... ++. +..+. ....+ .....++++..++|
T Consensus 836 ~ggd~~Li~i~lg~~~~~LGGS~laq~~~------~~---g~~-~P~vd~~~~-lk~~f-------~~i~~li~~glV~A 897 (1310)
T TIGR01735 836 DKGDSHLLLVDLGPGKNRLGGSALAQVFG------QL---GGD-CPDLDDPER-LKAFF-------AVMQGLVAEGLLLA 897 (1310)
T ss_pred CCCCceEEEEEccCCcccchHHHHHHHhc------cc---cCC-CCCCCcHHH-HHHHH-------HHHHHHHHcCCeEE
Confidence 85 53 553 33 355554322221 11 111 221 11111 11111 11123455556999
Q ss_pred eeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHH
Q psy12424 213 CTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM 292 (324)
Q Consensus 213 ~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l 292 (324)
|||+|+|||+++|.|||.++++|++|+++++|..+....+ .|+.| +|++|++++.+++++.+
T Consensus 898 ~HDvSdGGL~~aLaEMAfag~~G~~Idl~~i~~~~~~~LF-----------------sEs~G-~VieV~~e~~~~v~~~l 959 (1310)
T TIGR01735 898 YHDRSDGGLVTTLLEMAFAGHCGLDVDLDALGDSLFAVLF-----------------NEELG-AVIQVAKPDLAAVLELL 959 (1310)
T ss_pred EeeCCcChHHHHHHHHHHhCCCcEEEEeCCCCCcHHHHHh-----------------CCCCc-EEEEEehHHHHHHHHHH
Confidence 9999999999999999999999999999987764432211 23345 89999999999999988
Q ss_pred hc---ccceEEEEecC-CCcEEEecCCce
Q psy12424 293 NG---LAWIIGKVTPG-DRSVIIKDSPDI 317 (324)
Q Consensus 293 ~~---~~~~IG~V~~~-~~~~~l~~~~~~ 317 (324)
++ ++.+||.++.. .+.+.+..+++.
T Consensus 960 ~~~Gi~~~viGig~~~~~~~i~I~~~g~~ 988 (1310)
T TIGR01735 960 RAAGLTALILGIGTPTGHPMIRISVNGAT 988 (1310)
T ss_pred HhCCCceEEEEEEEECCCCEEEEEeCCEE
Confidence 76 67778865532 235555555554
No 41
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.91 E-value=8.2e-23 Score=218.05 Aligned_cols=268 Identities=13% Similarity=0.073 Sum_probs=183.8
Q ss_pred CCCCCC----CCCeeEEeCCC-CCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcch---hhhhHhhhh
Q psy12424 6 LVRIEI----GLDSCIIPLAS-GRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTD---IDALQMIVG 76 (324)
Q Consensus 6 ~~~~~~----gdDaavi~~~~-~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P---~~~~l~~l~ 76 (324)
.|-+|+ +.||+|++++. . ...++.+++..+++. .|||.+|+.||+++++||+|+|+.+ +.++++ +.
T Consensus 662 ~p~vGp~q~p~~DaaV~~~~~~~----~~g~ama~G~~P~~~~~dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N-~~ 736 (1290)
T PRK05297 662 DQMVGPWQVPVADCAVTAASYDG----YAGEAMAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSAN-WM 736 (1290)
T ss_pred cCCcCCCCCCCCCeEEEEecCCC----CeEEEEEEcCCCCeeccCHHHHHHHHHHHHHhhheecCCccccceEEEEE-Ee
Confidence 355565 78999999842 2 467999999988875 6999999999999999999999876 332222 34
Q ss_pred cCCCCChhHHhhHHHHHHHHHH-HHHHHhCCeeeCcccccc-----------C----CceEeEEEEEeeeC-CcccCCCC
Q psy12424 77 ISTQLTEDERDIIVPMLIEGFK-AQASVAGVNISKVAVKLN-----------P----WMTIGGVVTSVCSS-EEFVMPNQ 139 (324)
Q Consensus 77 ~p~~~~~~~~~~~~~~i~~Gi~-~a~~~~g~~ivGGdt~~~-----------~----~~~i~~t~iG~~~~-~~~~~~~~ 139 (324)
+|...+ +.+++|.+.++++. ++|+++|++++||+.+.+ . -+++.++++|.+++ .+.++...
T Consensus 737 ~~~~~p--~~~a~L~~av~a~~~e~c~~LgipiigGkdSmS~~t~yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~l 814 (1290)
T PRK05297 737 AAAGHP--GEDARLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQL 814 (1290)
T ss_pred ccCCCC--chHHHHHHHHHHHHHHHHHHcCCCccccchhcCCccccccCCCCCcceeCCccEEEEEEEecCcccccCccc
Confidence 443332 24588999999999 999999999999985542 1 13666788898876 66777766
Q ss_pred C-CCCCEEEEe--C----CCChHHHHHHHHhhhhhhhhhhhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Q psy12424 140 A-QPGDVIILT--K----PLGTQMSVTIRSWLKNEEKLSFLKSIKVDS-AMLKQCVNSAITLMATINKKAAILMKKYNAH 211 (324)
Q Consensus 140 a-~~GD~Ii~t--g----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (324)
. .+|+.|++. + .+|.+.....+. . +... ++. ...++. ...+ .....++++..++
T Consensus 815 kk~~g~~l~lI~lg~~~~~lGGS~laq~~~------~---~g~~-~P~v~d~~~l-k~~~-------~~v~~li~~glv~ 876 (1290)
T PRK05297 815 RTDKDTALLLIDLGRGKNRLGGSALAQVYN------Q---LGDK-APDVDDAEDL-KGFF-------NAIQALVAEGLLL 876 (1290)
T ss_pred ccCCCCEEEEEECCCCcccchHhHHHHHhh------h---hcCC-CCCCCCHHHH-HHHH-------HHHHHHHHcCCEE
Confidence 4 678888876 2 245444322221 1 1111 332 111111 1111 1112345566699
Q ss_pred EeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHH
Q psy12424 212 ACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKE 291 (324)
Q Consensus 212 a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~ 291 (324)
||||+|+|||+++|.|||.++++|++|+++++|..+ .+. | ..|+.| +|++|++++.+++++.
T Consensus 877 S~HDvSdGGL~~aLaEMAfa~~~G~~Idl~~i~~~~----~~~---------L----FsE~~G-~vveV~~~~~~~v~~~ 938 (1290)
T PRK05297 877 AYHDRSDGGLLTTLAEMAFAGHCGLDIDLDALGDDA----LAA---------L----FNEELG-AVIQVRAADRDAVEAI 938 (1290)
T ss_pred EEEeCCcCHHHHHHHHHHhhCCCcEEEEeCCCCchH----HHH---------H----hCCCce-EEEEEehHHHHHHHHH
Confidence 999999999999999999999999999998876322 111 1 123344 6799999998888888
Q ss_pred Hhc-----ccceEEEEecCCCcEEEecCCce
Q psy12424 292 MNG-----LAWIIGKVTPGDRSVIIKDSPDI 317 (324)
Q Consensus 292 l~~-----~~~~IG~V~~~~~~~~l~~~~~~ 317 (324)
+++ ++.+||+|++++ .+.+..+++.
T Consensus 939 l~~~gi~~~~~~IG~vt~~~-~l~I~~~~~~ 968 (1290)
T PRK05297 939 LAEHGLSDCVHVIGKPNAGD-RIVITRNGKT 968 (1290)
T ss_pred HHHcCCCCCCeEEEEECCCc-eEEEEeCCee
Confidence 864 567899998654 4665555543
No 42
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.90 E-value=2.6e-22 Score=212.36 Aligned_cols=265 Identities=13% Similarity=0.052 Sum_probs=181.3
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC-----C
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST-----Q 80 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~-----~ 80 (324)
|...++.||+|++.... ....++.|+|.++++. .|||.+++.||++++++|+| |.|..+ .+++++-+ +
T Consensus 679 p~q~p~aD~aV~~~~~~---~~~g~a~s~G~~p~~~~~dp~~ga~~AV~Ea~~Nlva--a~~~~l-~di~~s~nw~~~~~ 752 (1307)
T PLN03206 679 PLQIPLADVAVIAQTHT---GLTGGACAIGEQPIKGLVDPKAMARLAVGEALTNLVW--AKVTAL-SDVKASGNWMYAAK 752 (1307)
T ss_pred CccCCCcceeEEEEeCC---CCeEEEEEecCCCceeeeCHHHHHHHHHHHHHhHhhc--cCCCcH-HHeEEEcChhHhhc
Confidence 34456889999987531 0257999999998874 69999999999999999999 555432 34443333 1
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-----------ceEeEEEEEeeeC-CcccCCCCCCCCCEEEE
Q psy12424 81 LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-----------MTIGGVVTSVCSS-EEFVMPNQAQPGDVIIL 148 (324)
Q Consensus 81 ~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-----------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~ 148 (324)
.+. ..+.+.+.++|+.++|+++|+|++||+.+.+.+ +++.++++|.+++ .+.++..-.++||.+++
T Consensus 753 ~p~--~~~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~TLvIs~~~~v~Dv~~~vtp~lK~~G~~vlL 830 (1307)
T PLN03206 753 LDG--EGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPGNLVISAYVTCPDITKTVTPDLKLGDDGVLL 830 (1307)
T ss_pred CCC--CHHHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCCCEEEEEEEEcCCcccCcChhhcCCCCEEEE
Confidence 111 125778999999999999999999998877642 3556778888876 56777766678998877
Q ss_pred ---eC----CCChHHHHHHHHhhhhhhhhhhhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCcc
Q psy12424 149 ---TK----PLGTQMSVTIRSWLKNEEKLSFLKSIKVDS-AMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYG 220 (324)
Q Consensus 149 ---tg----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GG 220 (324)
+| .+|.+.....+. +. ... ++. +..+. .... .....+++++..++|+||+|+||
T Consensus 831 ~idlG~~~~~LGGS~~~q~~~------~~---g~~-~Pdv~d~~~-lK~~-------f~av~~Li~~glV~A~HDvSdGG 892 (1307)
T PLN03206 831 HVDLGKGKRRLGGSALAQAYD------QI---GDD-CPDLDDVAY-LKKA-------FEATQDLIAKRLISAGHDISDGG 892 (1307)
T ss_pred EEecCCCCcCccccHHHHHhC------cc---CCC-CCCCCCHHH-HHHH-------HHHHHHHHHCCCeeEEEeCCcCH
Confidence 44 356554322221 10 111 221 01111 1111 11113456666799999999999
Q ss_pred ccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccc
Q psy12424 221 LTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAW 297 (324)
Q Consensus 221 L~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~ 297 (324)
|+.+|.|||.++++|++|+++..+..+ ++. || .|+.| +|++|++++.+++++.+++ ++.
T Consensus 893 L~~ALaEMAfag~~G~~Idl~~~~~~~----~~~---------LF----sEs~G-~VieV~~e~~~~v~~~l~~~gi~~~ 954 (1307)
T PLN03206 893 LVVTLLEMAFAGNCGINVDLPSSGHSA----FET---------LF----AEELG-LVLEVSRKNLDAVMEKLAAAGVTAE 954 (1307)
T ss_pred HHHHHHHHHhhcCCcEEEEeCCccchH----HHH---------Hh----CCCcc-EEEEEehhHHHHHHHHHHHCCCCeE
Confidence 999999999999999999986533211 111 21 24444 9999999999999998876 788
Q ss_pred eEEEEecCCCcEEEecCCc
Q psy12424 298 IIGKVTPGDRSVIIKDSPD 316 (324)
Q Consensus 298 ~IG~V~~~~~~~~l~~~~~ 316 (324)
+||+|++++ .+.+..+++
T Consensus 955 vIG~vt~~~-~i~I~~~g~ 972 (1307)
T PLN03206 955 VIGQVTASP-LIEVKVDGA 972 (1307)
T ss_pred EEEEECCCC-eEEEEECCE
Confidence 999998654 466655555
No 43
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.90 E-value=1.7e-23 Score=223.30 Aligned_cols=279 Identities=11% Similarity=0.009 Sum_probs=183.4
Q ss_pred CCCCCCeeEEeCCCC-------C--C----CCCceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhc--CcchhhhhH
Q psy12424 9 IEIGLDSCIIPLASG-------R--S----PSPLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAV--GVTDIDALQ 72 (324)
Q Consensus 9 ~~~gdDaavi~~~~~-------~--~----~~~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~--Ga~P~~~~l 72 (324)
.+++|++++++.... + . ..+..+++...+ ++|.-.+||.++...+-..+||+.+| ||+|++. +
T Consensus 250 ~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~~~fK~ETHNhPsaiePf~GAaTG~GG~iRD~~~~G~Ga~piag-~ 328 (1290)
T PRK05297 250 SAYKDNAAVMEGSKVGRFFPDPDTGRYGYHQEPAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGSKPKAG-L 328 (1290)
T ss_pred EEecCCcEEEEcccccccccccccccccccccceEEEEEeccCCCCCccCCCCcccccCCceeccccccCCCCeeeec-c
Confidence 467899999995400 0 0 003456777663 66777799999999999999999999 9999976 5
Q ss_pred hhhhcCCC-C----Chh-----------HHhhHHHHHHHHHHHHHHHhCCeeeCccccccC--------------CceEe
Q psy12424 73 MIVGISTQ-L----TED-----------ERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP--------------WMTIG 122 (324)
Q Consensus 73 ~~l~~p~~-~----~~~-----------~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~--------------~~~i~ 122 (324)
+.+++.+- . ++. .....+.+...|++++|+++|+|++||+++.+. .|++.
T Consensus 329 ~~~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~Pvv~G~Vs~yne~~~~~~~~~~~~i~P~~~ 408 (1290)
T PRK05297 329 TGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRTFEQKVNSHNEEVRGYHKPIML 408 (1290)
T ss_pred eeEEecCCCCCCCCCccccccCCccccCCHhHhhhhccccHHHHhhhhCCCccceEEEEEeccccCccccccccccceEE
Confidence 66666321 0 110 001256666679999999999999999996543 24566
Q ss_pred EEEEEeeeCCcccCCCCCCCCCEEEEeCCC----ChHHHHHHHHhhhhhhhhhhhh-cc--cCChHHHHHHHHHHHHHHH
Q psy12424 123 GVVTSVCSSEEFVMPNQAQPGDVIILTKPL----GTQMSVTIRSWLKNEEKLSFLK-SI--KVDSAMLKQCVNSAITLMA 195 (324)
Q Consensus 123 ~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~----G~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 195 (324)
+.++|.+++++.. +...++||.|+++|.. |.+++ .+..+........+. .. ..+++ .++ .+ .
T Consensus 409 vg~vG~i~~~~~~-~~~~~~Gd~IvllG~~~~rdglgGs--~~ss~~~g~~~~~~~~~~Vq~~d~~-~ek----~~---~ 477 (1290)
T PRK05297 409 AGGIGNIRADHVQ-KGEIPVGAKLIVLGGPAMRIGLGGG--AASSMASGQSSEDLDFASVQRGNPE-MER----RC---Q 477 (1290)
T ss_pred EEEEEEEehhhcc-ccCCCCCCEEEEECCCCCCCCccHH--HHHHHHhcccccccccCCCCcCCHH-HHH----HH---H
Confidence 6789999875554 4456999999999752 33332 222211000010001 00 01221 111 11 1
Q ss_pred HHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccce
Q psy12424 196 TINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGG 275 (324)
Q Consensus 196 ~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ 275 (324)
++-...........|++|||+|+|||+.+|.||+..+++|++|+++++|+.+....- ++ + ...||.+|
T Consensus 478 ~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~~l~p-------~e--i---l~SESQeR 545 (1290)
T PRK05297 478 EVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEPGMSP-------LE--I---WCNESQER 545 (1290)
T ss_pred HHHHHHHHhcccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccCCCCH-------HH--H---Hhccccce
Confidence 111111111122459999999999999999999999999999999999976542100 11 1 12567889
Q ss_pred EEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEe
Q psy12424 276 LFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIK 312 (324)
Q Consensus 276 ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~ 312 (324)
++++|+|++.++|++.+++ ++++||+|++++ ++.+.
T Consensus 546 mlv~V~~e~~e~~~~i~~~~~l~~~vIG~vt~~~-~l~v~ 584 (1290)
T PRK05297 546 YVLAIAPEDLELFEAICERERCPFAVVGEATEER-HLTLE 584 (1290)
T ss_pred EEEEEcchhHHHHHHHHHhcCCCEEEEEEEeCCC-eEEEE
Confidence 9999999999999998876 889999999754 45554
No 44
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=99.87 E-value=4.8e-23 Score=159.08 Aligned_cols=92 Identities=24% Similarity=0.257 Sum_probs=82.7
Q ss_pred CCCeeEEeCCCCCCCCCceEEEeecCCCCccC----ChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 12 GLDSCIIPLASGRSPSPLYLIQSTDFFYPLVT----HPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 12 gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~----~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
||||||++++. ++.+++++|.+.+..+ +||++||+++++|+|||++|||+|+++ ++++++|+..++
T Consensus 1 GdDaavi~~~~-----~~~~~~~~d~~~~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~~-~~~l~~~~~~~~---- 70 (96)
T PF00586_consen 1 GDDAAVIRIPD-----GKRLVVSTDGFGTSVHFAFMDPYDGGWKAVAEALSDLAAMGAKPLAI-LDSLGLPNPESP---- 70 (96)
T ss_dssp TSSSEEEEETS-----TEEEEEEEEEEETHHHHHTCTHHHHHHHHHHHHHHHHHTTTEEEEEE-EEEEEESTTSBH----
T ss_pred CCceEEEEcCC-----CCeEEEEEEeccCcccccccCHHHHHHHHHHHHHHHHHhcCCeeeEE-EEEEEcCCCCCH----
Confidence 79999999986 5899999998766543 999999999999999999999999987 577899887766
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccc
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAV 113 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt 113 (324)
++++++++|++++|+++|++++||||
T Consensus 71 ~~l~~~~~Gi~~~~~~~g~~ivGG~T 96 (96)
T PF00586_consen 71 EELKEIVKGIAEACREFGIPIVGGDT 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCcEeCcCC
Confidence 58999999999999999999999998
No 45
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.85 E-value=2.7e-20 Score=195.71 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=166.5
Q ss_pred CCeeEEeCCC--CCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC-----CCChh
Q psy12424 13 LDSCIIPLAS--GRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST-----QLTED 84 (324)
Q Consensus 13 dDaavi~~~~--~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~-----~~~~~ 84 (324)
.||+|++++- +++ ...+++|+|.++++. .|||++++.||++++++|+|+|+.|..+ +|+|.+ +..+
T Consensus 677 ~DaaV~~~~~~~g~t--~~g~ams~g~nP~~~~~dPy~ga~~AV~EA~rNlva~G~~~~~i---~Lnf~~~F~k~p~~p- 750 (1239)
T TIGR01857 677 TEASVAKLPVLGGET--HTASAIAWGFNPYIAEWSPYHGAAYAVIESLAKLVAAGADYKKA---RLSFQEYFEKLDKDA- 750 (1239)
T ss_pred cceEEEEeeccCCCC--CeEEEEEecCCCceeccCHHHHHHHHHHHHHhhhheeCCcHHHE---EEecccccccCCCCh-
Confidence 6999999762 111 468999999998875 6999999999999999999999999863 455532 1222
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 85 ERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 85 ~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
+.++++.+.+.|+.++|+++|+|++||+.+.+.+ |++.++++|..+-.+.++....++||.|++.+.....
T Consensus 751 ~~w~~~~~al~ga~~a~~~lgipvigGKdSmsn~~~~v~iPPTlvi~avgv~Dv~~~vt~~~K~~G~~i~lig~~~~~-- 828 (1239)
T TIGR01857 751 ERWGKPFAALLGAIKAQIDLGLPAIGGKDSMSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQALE-- 828 (1239)
T ss_pred hHHhHHHHHHHHHHHHHHHhCCCCCcceecCccccCCeeeCCccEEEEEeccCHhhccChhhccCCCEEEEEcCCccc--
Confidence 4678888999999999999999999999887753 3666677886654677777766789999998732110
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
.+. ++.+.+ . .......+++++..+.|+||+|+|||+.+|.|||..+++|++
T Consensus 829 ---------~g~--------~d~~~~----k-------~~~~~v~~li~~g~v~s~hDvS~GGL~vaLaEMaf~g~~G~~ 880 (1239)
T TIGR01857 829 ---------DGT--------IDFDLL----K-------ENFAQIEELIADHKVVSASAVKYGGVAESLAKMTFGNRIGAE 880 (1239)
T ss_pred ---------CCC--------CCHHHH----H-------HHHHHHHHHHHCCCEEEEEeCCcChHHHHHHHHHhcCCceEE
Confidence 000 222111 1 011111345666679999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEecC
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPG 305 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~~~ 305 (324)
|+++.. . . +..|+.|++|++++++. + ..++.+||+|+++
T Consensus 881 i~l~~~------~---~-------------LFsE~~gr~vvev~~~~-----~--~~~~~~IG~v~~~ 919 (1239)
T TIGR01857 881 LNNPEL------E---D-------------LFTAQYGSFIFESPEEL-----S--IANVEKIGQTTAD 919 (1239)
T ss_pred EecCcH------H---H-------------hhCCCCceEEEEEChhh-----c--CCcceEEEEECCc
Confidence 987531 0 0 12567889999998873 1 1267899999864
No 46
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.76 E-value=1.5e-17 Score=164.98 Aligned_cols=181 Identities=9% Similarity=0.057 Sum_probs=134.9
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
+.||.|++|+++.. ...+++++|+++.++ .|||+++..||++++++++|+||+|+.+ .++++|.++..+ .+
T Consensus 381 ~~P~~~a~v~~~~~-----~~~~a~~~~~np~~~~~~p~~g~~~av~ea~rn~~~~Ga~p~~i-~~~~nf~~p~~~--~~ 452 (601)
T PRK14090 381 LPPGFGAAVMRIKR-----DGGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPLAI-TNCVNYGDPDVD--PV 452 (601)
T ss_pred ccCCCCcEEEEEcC-----CCeEEEEcCCCCceeccCHHHHHHHHHHHHHhhHhhhCCcHHHc-eechhcCCCCCC--HH
Confidence 56788999999975 348999999988775 6999999999999999999999999986 688999654433 33
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHH
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTI 160 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~ 160 (324)
+|.+.++||.++|+.+++|++||+.+.|++ |++.+.++|.++..+.++. +.|| |++.|...
T Consensus 453 -~~~~~~~~~~~a~~~~~~p~i~G~~S~~n~~~~~~i~PT~~~~~vg~~~~~~~~~~---~~~~-i~lig~~~------- 520 (601)
T PRK14090 453 -GLSAMMTALKDACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKP---KPSK-VFAVGWND------- 520 (601)
T ss_pred -HHHHHHHHHHHHHHHhCCCeecceeccccCCCCccCCCCceEEEEEEeccccccCC---CCCe-EEEECCCC-------
Confidence 799999999999999999999999998864 4677778999986555554 5788 88888521
Q ss_pred HHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424 161 RSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKY-NAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~ 239 (324)
++.+. .. +......+++++. .++++||+|+ |+.. +. -.+.|+.|.
T Consensus 521 -----------------~~~~~----~~-------~~~~~~~~~i~~~~~~~~~hd~s~-g~~~----~~-~~~~~~~~~ 566 (601)
T PRK14090 521 -----------------FELER----EK-------ELWREIRKLSEEGAFILSSSQLLT-RTHV----ET-FREYGLKIK 566 (601)
T ss_pred -----------------CCHHH----HH-------HHHHHHHHHHhCCCeEEEEEEccc-Cchh----hh-hcccccccc
Confidence 11100 00 0111113456665 5899999999 7753 22 235677777
Q ss_pred ecCC
Q psy12424 240 IHTL 243 (324)
Q Consensus 240 ~~~i 243 (324)
++++
T Consensus 567 ~~~~ 570 (601)
T PRK14090 567 LKLL 570 (601)
T ss_pred chhh
Confidence 6655
No 47
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=99.75 E-value=9.3e-18 Score=140.14 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=72.6
Q ss_pred ccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHH
Q psy12424 208 YNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKD 287 (324)
Q Consensus 208 ~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~ 287 (324)
..++||||+|||||+.+|.||+++|++|++|+.+.+|+.+.+....+ + +..+++|++++++++++.++
T Consensus 56 ~~i~a~~DvSdGGL~~~l~em~~~s~~g~~i~~~~~p~~~~~~~~~~---------~---l~~~~~g~~l~~v~~~~~~~ 123 (153)
T PF02769_consen 56 GLIHAAHDVSDGGLAGALAEMAEASGVGAEIDLDKIPLSDELQSPLE---------M---LFSESEGRLLVAVPPEDAEE 123 (153)
T ss_dssp TTEEEEEEESTTHHHHHHHHHHHCTTEEEEEEGGGSHHHHHHHHHHH---------H---HHHSSSTEEEEEEEGGGHHH
T ss_pred cceEEEEecCCchHHHHHHHHHHhCCcceEEccccchhhhhhhhhhh---------h---hccCCCCCEEEEEcHHHHHH
Confidence 56999999999999999999999999999999998887766531111 1 22356778999999999999
Q ss_pred HHHHHhc---c-cceEEEEecCCC
Q psy12424 288 FIKEMNG---L-AWIIGKVTPGDR 307 (324)
Q Consensus 288 ~~~~l~~---~-~~~IG~V~~~~~ 307 (324)
+++.+++ + +++||+|+++++
T Consensus 124 ~~~~~~~~g~~~~~~IG~V~~~~~ 147 (153)
T PF02769_consen 124 FLAALKKAGIPNATVIGEVTEGPG 147 (153)
T ss_dssp HHHHHHHTTCTTEEEEEEEESSSS
T ss_pred HHHHHHhCCCCCEEEEEEEEcCCC
Confidence 9998887 4 899999998764
No 48
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.74 E-value=1.4e-17 Score=175.48 Aligned_cols=259 Identities=15% Similarity=0.134 Sum_probs=172.2
Q ss_pred CceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC--------------CCChhHHhhHHHH
Q psy12424 28 PLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST--------------QLTEDERDIIVPM 92 (324)
Q Consensus 28 ~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~--------------~~~~~~~~~~~~~ 92 (324)
+..+++...+ ++|.-.+||.++...+-..+||+.+||++.. ++|.+|. +++ +.+.+.+
T Consensus 311 ~~~v~fK~ETHNHPSaIePf~GAATGvGG~IRD~lsg~a~~~----~~Lr~~g~g~p~~~~~~~~~gklp---~r~I~~g 383 (1239)
T TIGR01857 311 PWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVY----QAMRVTGAGDPTVPISETLKGKLP---QRKITTT 383 (1239)
T ss_pred ceEEEEEEccCCCCCccCCCCcccccCCchhccccccceeee----cccccCCCCCCCccccccccCCCc---hhhhhhh
Confidence 4556677663 6677779999999999999999999998743 4344421 122 2367888
Q ss_pred HHHHHHHHHHHhCCeeeCccccccCC----ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC----CChHHHHHHHHhh
Q psy12424 93 LIEGFKAQASVAGVNISKVAVKLNPW----MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP----LGTQMSVTIRSWL 164 (324)
Q Consensus 93 i~~Gi~~a~~~~g~~ivGGdt~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~----~G~~~~~~~~~~~ 164 (324)
.+.|+++.-+++|+|-++|.+.+.+. +.+.+.++|.++++++. +...++||.|++.|. .|.++.......+
T Consensus 384 v~~G~s~YGN~~GvpTg~g~~~f~~~Y~~~~lv~~~~vG~~~~~~v~-k~~~~~Gd~iv~~Gg~tGRdGigGat~SS~~~ 462 (1239)
T TIGR01857 384 AAHGYSSYGNQIGLATGQVSEIYHPGYVAKRMEVGAVVAATPKENVV-REKPEPGDVIILLGGKTGRDGIGGATGSSKEH 462 (1239)
T ss_pred cccceeccCcccCCceeeEEEEEecCCCCCceEEEEEEEeecHHHhc-cCCCCCCCEEEEECCCCCcCcccchhhhhhhc
Confidence 99999999999999999999988765 35566678999876654 455899999999753 4544432112111
Q ss_pred hhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCC
Q psy12424 165 KNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLP 244 (324)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP 244 (324)
............+...++.++ ++.+...+.+.+..|++|||+|.|||..+|.||+. |++|+++++|
T Consensus 463 ~~~s~~~~~~aVQ~Gdp~~Ek----------kl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~----G~~IdL~~vp 528 (1239)
T TIGR01857 463 TVESLELCGAEVQKGNAPEER----------KIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----GLEIDLNKVP 528 (1239)
T ss_pred cccccccccCccCcCCHHHHH----------HHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC----CEEEEcCCCc
Confidence 000000000000011111111 11121123444456999999999999999999995 8999999998
Q ss_pred CChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCCce-Eee
Q psy12424 245 ILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSPDI-FHV 320 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~~~-~~~ 320 (324)
.......- ++ + ...||.+|++++|+|++.++|.+.+++ ++++||+|++++ .+++..+++. +++
T Consensus 529 ~~~~gl~p-------~E--i---LfSESQeRmlv~V~pe~~e~f~~i~~~~~l~~~vIG~vt~~~-~l~v~~~g~~v~dL 595 (1239)
T TIGR01857 529 KKYEGLNG-------TE--L---AISESQERMAVVVSPEDVDAFLAYCNEENLEATVVATVTEKP-RLVMNWNGKTIVDL 595 (1239)
T ss_pred cccCCCCH-------HH--H---hhCCcCCeEEEEEChhhHHHHHHHHHHCCCCEEEEEEECCCC-eEEEEeCCceEEEe
Confidence 64421100 11 1 226788999999999999999998875 889999999654 4556555554 444
Q ss_pred c
Q psy12424 321 T 321 (324)
Q Consensus 321 ~ 321 (324)
+
T Consensus 596 ~ 596 (1239)
T TIGR01857 596 S 596 (1239)
T ss_pred e
Confidence 3
No 49
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.71 E-value=3.5e-17 Score=173.71 Aligned_cols=264 Identities=9% Similarity=0.024 Sum_probs=173.8
Q ss_pred CceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhc--CcchhhhhHhhhhcCCC-CC----hh------------HHh
Q psy12424 28 PLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAV--GVTDIDALQMIVGISTQ-LT----ED------------ERD 87 (324)
Q Consensus 28 ~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~--Ga~P~~~~l~~l~~p~~-~~----~~------------~~~ 87 (324)
+..+++...+ ++|...+||.++...+-..+||+.+| ||+|++. ++.+.+.+- .+ |. .+.
T Consensus 285 ~~~i~fK~ETHNHPTaIePf~GAATGvGG~IRD~~a~GrGa~PiA~-l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~ 363 (1307)
T PLN03206 285 DLDILLTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVAG-TAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPL 363 (1307)
T ss_pred ceEEEEEeccCCCCCccCCCCcccccCCceeecccccCCCceeeec-ceeEEecCCCCCCCcCccccccccCcccCCCHh
Confidence 3456666663 66777799999999999999999999 9999976 576776321 11 00 134
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCcccc-cc-----------CCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC----C
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVK-LN-----------PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK----P 151 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~-~~-----------~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg----~ 151 (324)
+.+.+.+.|+++.-+++|+|.++|.+. +. -.|.+-..++|.++++++ .+...++||.|++.| .
T Consensus 364 ~I~~~~~~G~s~YGN~~G~P~v~G~~~~F~~~~~~g~~~~~~kPim~ag~vG~~~~~~v-~k~~~~~G~~vv~lGG~tgR 442 (1307)
T PLN03206 364 QILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERREWLKPIMFSGGIGQIDHTHL-TKGEPDIGMLVVKIGGPAYR 442 (1307)
T ss_pred HHhhccCCccccCCcccCCcccCcEEEEeccccccccccccCCCceEEEEEEEEcHHHc-ccCCCCCCCEEEEECCCccc
Confidence 677888999999999999999999974 21 134444456899987665 445599999999975 3
Q ss_pred CChHHHHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhh
Q psy12424 152 LGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKY 231 (324)
Q Consensus 152 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~ 231 (324)
.|.++.+.....+............+...++.++-+.+.+ +.-.++..+..|.+|||..-|||..++.||+..
T Consensus 443 dGigGat~SS~~~~~~s~~~d~~aVQ~GnP~~Ekklq~vi-------~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela~~ 515 (1307)
T PLN03206 443 IGMGGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYRVV-------RACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYP 515 (1307)
T ss_pred ccccchhhhhhhhCCccccccCCccccCCHHHHHHHHHHH-------HHHHHhhcCCCEEEEEecCCchHHHhHHHHhhc
Confidence 4554432122111100000000000122222222111111 100123334459999999999999999999975
Q ss_pred CCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCc
Q psy12424 232 QTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRS 308 (324)
Q Consensus 232 s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~ 308 (324)
.|++|+++++|+......- |+- + =.||.-|++++|+|++.++|++.++. ++++||+||++. +
T Consensus 516 --~G~~i~Ld~Vp~~e~gmsp-------~EI-~----~SESQERm~l~V~p~~~~~f~~i~~re~~~~~vVG~vT~~~-r 580 (1307)
T PLN03206 516 --KGAEIDIRAVVVGDHTLSV-------LEI-W----GAEYQEQDALLIKPESRDLLQSICDRERCSMAVIGTIDGSG-R 580 (1307)
T ss_pred --CceEEEhhhCcCCCCCCCH-------HHH-H----HhHHhhhheeeECcccHHHHHHHHHHcCCCeEEEEEEecCC-e
Confidence 7999999999986542111 110 1 14556689999999999999998887 899999999875 4
Q ss_pred EEEecCC
Q psy12424 309 VIIKDSP 315 (324)
Q Consensus 309 ~~l~~~~ 315 (324)
+++...+
T Consensus 581 l~v~~~~ 587 (1307)
T PLN03206 581 VVLVDSA 587 (1307)
T ss_pred EEEEECC
Confidence 5555543
No 50
>KOG1907|consensus
Probab=99.09 E-value=1.5e-08 Score=101.68 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=144.0
Q ss_pred CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhc------CCCCChhHHhhHHHHHHHHHHHHHHHhCCeeeCcccccc
Q psy12424 43 THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGI------STQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLN 116 (324)
Q Consensus 43 ~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~------p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~ 116 (324)
.||.-.++.+|++++.++.+.-..-+. -+-+ +.+.+-+ =..+-+.++.+.....++||.|=||.-+.+
T Consensus 724 ida~a~ARm~VaE~l~NLv~a~i~sL~----dvK~SgNWM~aak~~GE--GarlydAv~aL~~~L~eLgiAIdgGKDSlS 797 (1320)
T KOG1907|consen 724 IDAAASARMCVAEALMNLVAAKITSLK----DVKLSGNWMWAAKHPGE--GARLYDAVQALCLGLCELGIAIDGGKDSLS 797 (1320)
T ss_pred hCHHHHhHHHHHHHHHHhHhhcccchh----heeeccceeecccCCCc--chHHHHHHHHHHHHHHHhceeecCCccchh
Confidence 488999999999999999976555432 1222 2222211 145667778888888899999999965544
Q ss_pred CC-----------ceEeEEEEEeeeC-CcccCCCC--CCCCCEEEEe--------CCCChHHHHHHHHhhhhhhhhhhhh
Q psy12424 117 PW-----------MTIGGVVTSVCSS-EEFVMPNQ--AQPGDVIILT--------KPLGTQMSVTIRSWLKNEEKLSFLK 174 (324)
Q Consensus 117 ~~-----------~~i~~t~iG~~~~-~~~~~~~~--a~~GD~Ii~t--------g~~G~~~~~~~~~~~~~~~~~~~~~ 174 (324)
-. .++.+++..-|+. .+.+++.- ..+|+...+. ..+|.+.++..|..+ ......
T Consensus 798 Ma~k~~ge~VkaPgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~Qi--G~d~Pd-- 873 (1320)
T KOG1907|consen 798 MAMKWDGEVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQI--GDDCPD-- 873 (1320)
T ss_pred hheeeCCeEEecCceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHh--CCCCCC--
Confidence 11 2555565555554 44555533 3456653332 357877765555432 111111
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHH--HH
Q psy12424 175 SIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLG--VI 252 (324)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~--~~ 252 (324)
+.. .+ .++..+.. ..++..+..|.|-||+|||||+.++.|||.++.+|++|+++..-..-..+ .+
T Consensus 874 ---l~~--~~-~lk~~f~~-------vqqL~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~idl~~~~~~~~~~~~LF 940 (1320)
T KOG1907|consen 874 ---LDN--FD-ELKKFFSV-------VQQLLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILF 940 (1320)
T ss_pred ---ccc--hH-HHHHHHHH-------HHHHHhcCceeecccccCCchhHHHHHHHhhcccceEEecCCccccccHHHHHH
Confidence 111 10 11111111 12344444599999999999999999999999999999998532211122 22
Q ss_pred hcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEec---CCCcEEEecCCceE
Q psy12424 253 ASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTP---GDRSVIIKDSPDIF 318 (324)
Q Consensus 253 ~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~---~~~~~~l~~~~~~~ 318 (324)
+|++ |.++-|+..+.+++++.+++ +...||++.. ....+.+..++..+
T Consensus 941 ~EEl------------------G~v~evs~~dl~~v~~~~~~~gv~~~~ig~~~~~~g~~~~i~~~~~g~~~ 994 (1320)
T KOG1907|consen 941 AEEL------------------GAVLEVSDTDLEKVLEIFSEAGVKCEYIGKASAVFGQDAHIKISVNGHLI 994 (1320)
T ss_pred HHhh------------------CeEEEeccccHHHHHHHHHhcCCcceeeeeeccccCCCceEEEecCCeEE
Confidence 3322 37788888888999998888 7789997732 23456665565554
No 51
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.34 E-value=5.8e-06 Score=89.33 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhCCeeeCccccccC----------CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCC----ChHH
Q psy12424 91 PMLIEGFKAQASVAGVNISKVAVKLNP----------WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPL----GTQM 156 (324)
Q Consensus 91 ~~i~~Gi~~a~~~~g~~ivGGdt~~~~----------~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~----G~~~ 156 (324)
..+++.-.++.+++|+|++.|-+-..+ +++.-...+|.++... +.....++||.|+++|.. |.++
T Consensus 223 ~~~~~~~~~~ln~~G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G~lg~i~~~~-~~k~~~~~G~~iV~lGg~~~~~G~~G 301 (1202)
T TIGR01739 223 TAMLQAQASALRASGVPTCGGFIRLISKNKLSLPTPYTPTYNTSILDRLCHVT-INTADEPPGQDIVALGQFEPSLLPDT 301 (1202)
T ss_pred HHHHHHHHHHHHhcCCCccceEEEEecccccccccCCCCeEEccccCCCChhh-cccccCCCCCEEEEECCCCCCCCCCC
Confidence 356778888999999999999765543 2322222467776543 566678999999999753 2222
Q ss_pred HHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CeEeeccCCccccchhHHhhhhCCCe
Q psy12424 157 SVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYN-AHACTDVTGYGLTGHATNLVKYQTNS 235 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~a~~DiS~GGL~~~L~~la~~s~~g 235 (324)
. .++. + -++....+ ..+.+..+ .+..++.+ ..+.||..-||+..+|.||+. ++|
T Consensus 302 ~--~~s~------------~-~s~~~~~~-iq~~i~~~-------~~~~~~~~i~~sI~D~Gagg~sn~l~El~~--~~G 356 (1202)
T TIGR01739 302 P--PLLY------------A-DSPLDVNK-ILTALALL-------TDDVKTPCIVGSIRPLGPCSVKEHLTALLP--PCG 356 (1202)
T ss_pred C--cccc------------C-CCHHHHHH-HHHHHHHH-------HHhccCCeeEEEecCCCCchHHHHHHHHhc--cCc
Confidence 1 1111 0 12222111 11122111 11122222 389999999999999999997 679
Q ss_pred EEEEecCCCCChhHHHHhcccCCc----ccccccCCCCccccceEEEEEch----------hhHHHHHHHHhc---ccce
Q psy12424 236 VNFMIHTLPILYPLGVIASRPGTR----FYQNVNRGHGIETSGGLFICLPE----------DHAKDFIKEMNG---LAWI 298 (324)
Q Consensus 236 ~~i~~~~iP~~~~~~~~~~~~~~~----~~~~l~~g~~~es~G~ll~~v~~----------e~~~~~~~~l~~---~~~~ 298 (324)
++|+++++|... ..-++..+.. +++++..-+--|++-+++++|++ +..+.|.+.++. ++++
T Consensus 357 ~~i~L~~lP~~~--~s~L~~~~~~~~e~~e~~v~~~~~N~~~~~~~LaV~~~~~~~~~~~~~~l~~~~~ic~re~cp~~v 434 (1202)
T TIGR01739 357 AELDLSNLPDEV--VAALARSSPANRVENEKMVKQYFLNVVCSVVFLTVKNTPHNTGTEGVTPLERLKTACRMFGCPVKV 434 (1202)
T ss_pred eEEEhHhCCchh--hccccCCChhhhHHHHHHhhhhcccccceeEEEEECCcccccccccchHHHHHHHHHHHCCCCEEE
Confidence 999999999431 1000100000 11111011223456678899988 677777665554 8999
Q ss_pred EEEEecCCCcEEEecC
Q psy12424 299 IGKVTPGDRSVIIKDS 314 (324)
Q Consensus 299 IG~V~~~~~~~~l~~~ 314 (324)
||+++++. ++.+.++
T Consensus 435 lG~~t~~~-~l~v~~~ 449 (1202)
T TIGR01739 435 LGKLVPLP-GLHIVSD 449 (1202)
T ss_pred EEEEeCCC-cEEEEeC
Confidence 99999865 5666554
No 52
>KOG1907|consensus
Probab=97.98 E-value=3.8e-05 Score=77.98 Aligned_cols=252 Identities=14% Similarity=0.073 Sum_probs=144.3
Q ss_pred EEEeecC-CCCccCChhhHHHHHHHHhhhHHHhcC--cchhhh----hHhhhhcCCCCChhH------------HhhHHH
Q psy12424 31 LIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAVG--VTDIDA----LQMIVGISTQLTEDE------------RDIIVP 91 (324)
Q Consensus 31 lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~G--a~P~~~----~l~~l~~p~~~~~~~------------~~~~~~ 91 (324)
|+++... +.|.--.||..+....-.-++|.-|.| +.+++- .+..|++|....|.| ....+-
T Consensus 306 ll~~aETHN~PtAVsPfpGA~TGtGGrIRD~~atGrGs~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~pl~ImI 385 (1320)
T KOG1907|consen 306 LLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASPLDIMI 385 (1320)
T ss_pred eEEEeeccCCCcccCCCCCCccCCCceeeccccccccceeeecccccccccccCCCCCCCCcccccCCccccCCHHHHHh
Confidence 4444442 334445788776666666678887764 455532 123345554222210 112344
Q ss_pred HHHHHHHHHHHHhCCeeeCccccc--------------cCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC------
Q psy12424 92 MLIEGFKAQASVAGVNISKVAVKL--------------NPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP------ 151 (324)
Q Consensus 92 ~i~~Gi~~a~~~~g~~ivGGdt~~--------------~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~------ 151 (324)
+.-.|-++.-++||=|++.|-+-. +-+|+.-.-.+|.+++.+ .....+.||..|+.+|.
T Consensus 386 EAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerrey~KPIMfsgGiG~i~~~~-~~K~~~apg~~likiGGp~yrIG 464 (1320)
T KOG1907|consen 386 EASNGASDYGNKFGEPVISGYARTFGMRVLLENGERREYHKPIMFSGGIGTIRKQH-ARKEPIAPGQLLIKIGGPVYRIG 464 (1320)
T ss_pred hCcCChhhhcccccchhhhhhhhhhcccccccCccccccccceEeecccCccCHHH-hhcCCCCCCCEEEEecCceEEEe
Confidence 445788888888888888875322 122322222478887644 44556899999998863
Q ss_pred CChHHHHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHH-HHHHHH--H-HHHHHhccCeEeeccCCccccchhHH
Q psy12424 152 LGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLM-ATINKK--A-AILMKKYNAHACTDVTGYGLTGHATN 227 (324)
Q Consensus 152 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~v~a~~DiS~GGL~~~L~~ 227 (324)
+|.+.+++. .. .+.-.. ++...+++. -.+| .++++. | +.+..+..|.+.||..-||..-.|.|
T Consensus 465 ~GGGAASSv---~~-G~g~ae-----LDFaaVQRG----daEM~~kl~rVvrAC~~lge~NpI~sIHDqGAGGn~NvlkE 531 (1320)
T KOG1907|consen 465 VGGGAASSV---VQ-GEGSAE-----LDFAAVQRG----DAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKE 531 (1320)
T ss_pred cccchhhhh---hc-CCCccc-----cchHHhhcC----CHHHHHHHHHHHHHHHHhcCCCceeEeeccCCCccccccHh
Confidence 343333221 11 111111 222222211 1112 122221 1 22333345999999999999999999
Q ss_pred hhhhCCCeEEEEecCCCCChhH----HHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEE
Q psy12424 228 LVKYQTNSVNFMIHTLPILYPL----GVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIG 300 (324)
Q Consensus 228 la~~s~~g~~i~~~~iP~~~~~----~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG 300 (324)
+....++|++|+.+.+++.+.. ..||.++. + +..+.|.+++.+.+....+. ++.++|
T Consensus 532 LV~~~~~Ga~~~~r~~~~gdpsmS~~EiW~aEyQ----------E------~~allv~a~~l~~le~IckRERcp~svVG 595 (1320)
T KOG1907|consen 532 LVEDNDLGATFDSRTFQLGDPSMSPMEIWCAEYQ----------E------NYALLVKAEDLDILESICKRERCPVSVVG 595 (1320)
T ss_pred hccccCCccEEEeeeeecCCCCCCHHHHhhhhhh----------h------cceeeeCHHHHHHHHHHHHhccCCeeEEE
Confidence 9999999999999998876543 33333221 1 24566888887766655544 889999
Q ss_pred EEecCCCcEEEec
Q psy12424 301 KVTPGDRSVIIKD 313 (324)
Q Consensus 301 ~V~~~~~~~~l~~ 313 (324)
+++.+. ++.+.+
T Consensus 596 ~vt~eq-R~~l~d 607 (1320)
T KOG1907|consen 596 EVTGEQ-RVILLD 607 (1320)
T ss_pred EEccCc-eEEEec
Confidence 999775 455444
No 53
>PHA03366 FGAM-synthase; Provisional
Probab=97.32 E-value=0.0024 Score=69.84 Aligned_cols=202 Identities=10% Similarity=0.078 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCC----------ceEeEE-EEEeeeCCcccCCCCCCCCCEEEEeCCCChH
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPW----------MTIGGV-VTSVCSSEEFVMPNQAQPGDVIILTKPLGTQ 155 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~----------~~i~~t-~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~ 155 (324)
..+....++.-.++.+++|.|+++|-+-.... .+++.+ .+|.++.. .+.....++||.|+..|..-.+
T Consensus 309 ~~~~~~~~~~~~~~lnk~G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~~~~~-~~~~~~~~~g~~vv~lG~y~~~ 387 (1304)
T PHA03366 309 PRQIAETLEAQARSLNCSGVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLSTISTI-ALDTARYRPGQYIVALGSFEPS 387 (1304)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEeccEeEEeccccccccccCCceeeecccccccchh-hhccCCCCCCCEEEEEcCceec
Confidence 35667778888899999999999997655421 133322 35665543 3455567899999999853211
Q ss_pred HHHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCe
Q psy12424 156 MSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNS 235 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g 235 (324)
....+..++.. =+..++. +..++...|.. . +-+..-..+.||-..||....|.|+.+ ..|
T Consensus 388 ~g~~a~~~~~~-----------~S~~~~n-avqr~~~~m~~---~---~~~~~v~~si~d~g~~~~~~~L~elv~--p~G 447 (1304)
T PHA03366 388 SGPDTPPYLYR-----------DSGLEAN-KILQALKLFYS---L---LPGPCISGSSRPLGPASVLEHLLALCP--PGG 447 (1304)
T ss_pred CCCCCCCcccc-----------cCHHHHH-HHHHHHHHHHh---h---cCCceEEEecCCCCcchHHHHHHHHhc--cCc
Confidence 00001111100 0111111 11222222211 0 111111358899999999999999997 469
Q ss_pred EEEEecCCCCChhHHHHhcccCCcccccc---cCC--CCccccceEEEEEchh--------hHHHHHHHHhc---ccceE
Q psy12424 236 VNFMIHTLPILYPLGVIASRPGTRFYQNV---NRG--HGIETSGGLFICLPED--------HAKDFIKEMNG---LAWII 299 (324)
Q Consensus 236 ~~i~~~~iP~~~~~~~~~~~~~~~~~~~l---~~g--~~~es~G~ll~~v~~e--------~~~~~~~~l~~---~~~~I 299 (324)
+.|+++++| +++....+..+..+.+.+ ... ++.. +--+.++++++ ..+.+.+.++- ++.++
T Consensus 448 ~~i~~~~lp--d~tls~le~~~~e~qe~~~~~v~~~flnv~-~~~~~l~i~~~~~~~~~~~~l~~l~~ic~rercp~~vv 524 (1304)
T PHA03366 448 LLLFLSALP--EDVVSGLKPFSASNRETNEEIVKQYFLNVY-CSVVFLVIKNTHEGGEGVTPLDALKRACRLAGCPVHIL 524 (1304)
T ss_pred eEEEhhhCC--hHHhhhhhcccccchhHHHHHhhhhhcccc-cceEEEEEcCcccccccccHHHHHHHHHHHcCCCEEEE
Confidence 999999999 555544443333322211 111 1111 22255667776 55555544433 89999
Q ss_pred EEEecCCCcEEEec
Q psy12424 300 GKVTPGDRSVIIKD 313 (324)
Q Consensus 300 G~V~~~~~~~~l~~ 313 (324)
|+++++. ++.+.+
T Consensus 525 G~~t~~~-~~~~~d 537 (1304)
T PHA03366 525 GRTVPLP-GIHFVN 537 (1304)
T ss_pred EEEecCC-cEEEEc
Confidence 9999875 455554
No 54
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=93.26 E-value=2.3 Score=39.11 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=51.3
Q ss_pred cCcchhhhhHhhhhc-CC---CCChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------c--eE-eEEEEEee
Q psy12424 63 VGVTDIDALQMIVGI-ST---QLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------M--TI-GGVVTSVC 129 (324)
Q Consensus 63 ~Ga~P~~~~l~~l~~-p~---~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~--~i-~~t~iG~~ 129 (324)
.|+.|+++.+-.+.. |+ +.+ .....+....++.=.++.+..|+|++||=+...+. + .+ .....+.+
T Consensus 30 P~~~~~aa~~G~Y~~~~~~~~~~~-~~~~~~~~~~l~aq~~~l~~~GvPv~~GF~R~i~~~~~~~~~~~~~~~~s~l~~~ 108 (282)
T PF12818_consen 30 PGVSPIAAALGLYVTSPSQVGDLS-HKVHRQITTALQAQARSLNASGVPVVGGFIRPIDSHLSGPVPLNVLTFTSILGSI 108 (282)
T ss_pred CCCcHhhhhceeeEecCcccCCch-HHHHHHHHHHHHHHHHHHhhcCCCccCcEeEEecCcccccccCceEEEEEEEccc
Confidence 577887653222211 32 112 12334566667777788889999999996554421 1 12 12223444
Q ss_pred eCCcccCCCCCCCCCEEEEeCCC
Q psy12424 130 SSEEFVMPNQAQPGDVIILTKPL 152 (324)
Q Consensus 130 ~~~~~~~~~~a~~GD~Ii~tg~~ 152 (324)
.. .-+.....++||.|+..|++
T Consensus 109 ~~-~~l~~~~~~~g~~iv~LG~F 130 (282)
T PF12818_consen 109 SQ-TNLNTARPRPGQYIVCLGDF 130 (282)
T ss_pred ch-hhhhccCCCCCCEEEEecCC
Confidence 33 34556677899999999864
No 55
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.18 E-value=60 Score=21.31 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=19.3
Q ss_pred ccccceEEEEEchhhHHHHHHHHh
Q psy12424 270 IETSGGLFICLPEDHAKDFIKEMN 293 (324)
Q Consensus 270 ~es~G~ll~~v~~e~~~~~~~~l~ 293 (324)
.|.+|+|++-..++.+.++-+++.
T Consensus 25 leGGGRLVvEl~~~Ea~~L~~~l~ 48 (51)
T PF11314_consen 25 LEGGGRLVVELNPDEAKELGEALK 48 (51)
T ss_pred cCCCcEEEEEeCHHHHHHHHHHHH
Confidence 346789999999999888877664
No 56
>PRK08227 autoinducer 2 aldolase; Validated
Probab=34.53 E-value=43 Score=30.52 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=46.4
Q ss_pred ceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCee
Q psy12424 29 LYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI 108 (324)
Q Consensus 29 ~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~i 108 (324)
..+++..+....++.+|. .+.+..++-|.+.+||.-.++. .+++ +. .+ .+.+++ +.-+.+.|++||+|+
T Consensus 75 ~~lil~ls~~t~~~~~~~---~~~l~~sVeeAvrlGAdAV~~~-v~~G--s~-~E---~~~l~~-l~~v~~ea~~~G~Pl 143 (264)
T PRK08227 75 KPVVLRASGGNSILKELS---NEAVAVDMEDAVRLNACAVAAQ-VFIG--SE-YE---HQSIKN-IIQLVDAGLRYGMPV 143 (264)
T ss_pred CcEEEEEcCCCCCCCCCC---cccceecHHHHHHCCCCEEEEE-EecC--CH-HH---HHHHHH-HHHHHHHHHHhCCcE
Confidence 457888776555555553 3566667888999999987652 2222 21 11 134444 556789999999999
Q ss_pred eC
Q psy12424 109 SK 110 (324)
Q Consensus 109 vG 110 (324)
+.
T Consensus 144 la 145 (264)
T PRK08227 144 MA 145 (264)
T ss_pred EE
Confidence 84
No 57
>PF15569 Imm21: Immunity protein 21
Probab=33.53 E-value=51 Score=24.84 Aligned_cols=22 Identities=9% Similarity=-0.201 Sum_probs=17.2
Q ss_pred HHHHHHHhCCeeeCccccccCC
Q psy12424 97 FKAQASVAGVNISKVAVKLNPW 118 (324)
Q Consensus 97 i~~a~~~~g~~ivGGdt~~~~~ 118 (324)
+-..|+.-+++|.|||+-....
T Consensus 20 ii~~~~~~~i~ILGGDVY~~~~ 41 (91)
T PF15569_consen 20 IINICEEKNIPILGGDVYKLKG 41 (91)
T ss_pred HHHHHHhcCceEEcceEEEeeC
Confidence 3467889999999999865543
No 58
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=31.37 E-value=50 Score=29.51 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=37.7
Q ss_pred HHHHhhhHHHhc-CcchhhhhHhhhhc-CCCCChhHHhhHHHHHHHHHHHHHHHhCCeeeC
Q psy12424 52 ACANVLSDIYAV-GVTDIDALQMIVGI-STQLTEDERDIIVPMLIEGFKAQASVAGVNISK 110 (324)
Q Consensus 52 av~~~~sDi~a~-Ga~P~~~~l~~l~~-p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivG 110 (324)
.+...++.+... +..++ +++|++.+ +...+....++.+.++++.++..|+++++||+-
T Consensus 116 ~i~~~i~~~~~~~~~~~~-v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 116 DIESKIRRLKREGKKVDV-VFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHHHHHHHHSTTEEE-EEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhhccCCCE-EEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 344555666666 33333 34687766 221112223468999999999999999999876
No 59
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=31.20 E-value=63 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=21.9
Q ss_pred EeEEEEEeeeCCc-ccCC---CCCCCCCEEEEeCC
Q psy12424 121 IGGVVTSVCSSEE-FVMP---NQAQPGDVIILTKP 151 (324)
Q Consensus 121 i~~t~iG~~~~~~-~~~~---~~a~~GD~Ii~tg~ 151 (324)
-+.|+++.+.... ++.+ ...++||.+|++|.
T Consensus 112 TGaTIIAI~r~~e~I~SPgPy~vle~gDtlvviG~ 146 (162)
T COG0490 112 TGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGE 146 (162)
T ss_pred cCcEEEEEEecCcEecCCCchhhhcCCCEEEEEec
Confidence 3567788777644 4433 44789999999985
No 60
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=31.05 E-value=50 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=13.6
Q ss_pred hHHHHHHHH---HHHHHHHhCCe
Q psy12424 88 IIVPMLIEG---FKAQASVAGVN 107 (324)
Q Consensus 88 ~~~~~i~~G---i~~a~~~~g~~ 107 (324)
.-++.+..| +.++|+.||+|
T Consensus 7 ~Ai~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 7 KAIEAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHTTSS-HHHHHHHHT--
T ss_pred HHHHHHHhCCCCHHHHHHHHCcC
Confidence 345566666 88999999998
No 61
>PRK12403 putative aminotransferase; Provisional
Probab=29.25 E-value=58 Score=32.07 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCeeeCccc
Q psy12424 92 MLIEGFKAQASVAGVNISKVAV 113 (324)
Q Consensus 92 ~i~~Gi~~a~~~~g~~ivGGdt 113 (324)
++++++.+.|+++|+.++==++
T Consensus 243 ~yl~~lr~lc~~~g~lLI~DEV 264 (460)
T PRK12403 243 SYWPEIQRICRQYDVLLCADEV 264 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEecc
Confidence 5789999999999999886444
No 62
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=26.92 E-value=42 Score=30.60 Aligned_cols=41 Identities=5% Similarity=0.137 Sum_probs=29.5
Q ss_pred hcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCeeeC
Q psy12424 62 AVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISK 110 (324)
Q Consensus 62 a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivG 110 (324)
.|||+-. ..++||.+++. +.+.+-.+=|+++|+..|++.+-
T Consensus 128 ~mGAktF----Vh~sfprhms~----~~l~~Rr~~M~~~C~~lGi~fv~ 168 (275)
T PF12683_consen 128 KMGAKTF----VHYSFPRHMSY----ELLARRRDIMEEACKDLGIKFVE 168 (275)
T ss_dssp HTT-S-E----EEEEETTGGGS----HHHHHHHHHHHHHHHHCT--EEE
T ss_pred HcCCceE----EEEechhhcch----HHHHHHHHHHHHHHHHcCCeEEE
Confidence 5899874 33689998876 57778888999999999998753
No 63
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=26.69 E-value=92 Score=29.50 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=48.2
Q ss_pred CceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCe
Q psy12424 28 PLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVN 107 (324)
Q Consensus 28 ~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ 107 (324)
+..|+++.+.-..-...++..-......++.++..+||.-+.++ .++. |. .++ +...+-.+.++-+.+.|+++|+|
T Consensus 83 ~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~l-v~~~-~d-~~~-~~~~~~~~~l~rv~~ec~~~giP 158 (340)
T PRK12858 83 NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLL-LYYR-PD-EDD-AINDRKHAFVERVGAECRANDIP 158 (340)
T ss_pred CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEE-EEeC-CC-cch-HHHHHHHHHHHHHHHHHHHcCCc
Confidence 45688887621100112223344566677888999999987653 3223 32 121 11245566788899999999999
Q ss_pred eeC
Q psy12424 108 ISK 110 (324)
Q Consensus 108 ivG 110 (324)
++-
T Consensus 159 lll 161 (340)
T PRK12858 159 FFL 161 (340)
T ss_pred eEE
Confidence 765
No 64
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.67 E-value=73 Score=30.22 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=46.6
Q ss_pred ceEEEeecCCCCc-cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCe
Q psy12424 29 LYLIQSTDFFYPL-VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVN 107 (324)
Q Consensus 29 ~~lv~t~D~~~~~-~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ 107 (324)
..+++..++...+ ..+|+ ...+..++-|.+.+||.-+++. .+++ +... .+++++ +.-+.+.|++||+|
T Consensus 126 iplIlkln~~t~l~~~~~~---~~~l~~sVedAlrLGAdAV~~t-vy~G---s~~E---~~ml~~-l~~i~~ea~~~GlP 194 (348)
T PRK09250 126 IPFILKLNHNELLSYPNTY---DQALTASVEDALRLGAVAVGAT-IYFG---SEES---RRQIEE-ISEAFEEAHELGLA 194 (348)
T ss_pred CCEEEEeCCCCCCCCCCCC---cccceecHHHHHHCCCCEEEEE-EecC---CHHH---HHHHHH-HHHHHHHHHHhCCC
Confidence 3477777764444 33443 5677788999999999988652 3222 2111 134444 56678999999999
Q ss_pred eeC
Q psy12424 108 ISK 110 (324)
Q Consensus 108 ivG 110 (324)
++.
T Consensus 195 lv~ 197 (348)
T PRK09250 195 TVL 197 (348)
T ss_pred EEE
Confidence 876
No 65
>KOG0117|consensus
Probab=23.88 E-value=4e+02 Score=26.27 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCeEEEEecCCCCC---hhHHHHhcccCCcccc-cccCCCCccccc-eEEEEEchhhHHHHHHHHhc----ccceEEEEe
Q psy12424 233 TNSVNFMIHTLPIL---YPLGVIASRPGTRFYQ-NVNRGHGIETSG-GLFICLPEDHAKDFIKEMNG----LAWIIGKVT 303 (324)
Q Consensus 233 ~~g~~i~~~~iP~~---~~~~~~~~~~~~~~~~-~l~~g~~~es~G-~ll~~v~~e~~~~~~~~l~~----~~~~IG~V~ 303 (324)
..|.+|.+-+||-. .++.-+|+.-|..|+- .|.+++.-.+=| .|+.-+.++.+.+.++.+.. +-..||-.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56889999999954 4577788887776653 233444333333 57767788888888888876 445677644
Q ss_pred c
Q psy12424 304 P 304 (324)
Q Consensus 304 ~ 304 (324)
.
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 3
No 66
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=21.97 E-value=1.1e+02 Score=27.99 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=46.2
Q ss_pred eEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCeee
Q psy12424 30 YLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNIS 109 (324)
Q Consensus 30 ~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~iv 109 (324)
.+++...+...+. |+. .+..+..++-|.+.+||--.++ ..+++- ..+. ++++++.+ +.+.|.+||+|++
T Consensus 79 plivkl~~~t~l~--~~~-~~~~~~~~ve~ai~lgadAV~~-~Vy~Gs--e~e~----~~i~~~~~-v~~~a~~~Gmp~v 147 (265)
T COG1830 79 PLIVKLNGSTSLS--PDP-NDQVLVATVEDAIRLGADAVGA-TVYVGS--ETER----EMIENISQ-VVEDAHELGMPLV 147 (265)
T ss_pred CEEEEeccccccC--CCc-ccceeeeeHHHHHhCCCcEEEE-EEecCC--cchH----HHHHHHHH-HHHHHHHcCCceE
Confidence 3555555443333 333 8889999999999999999986 343333 2222 45555544 5688999999976
Q ss_pred C
Q psy12424 110 K 110 (324)
Q Consensus 110 G 110 (324)
=
T Consensus 148 ~ 148 (265)
T COG1830 148 A 148 (265)
T ss_pred E
Confidence 3
No 67
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=21.60 E-value=2.2e+02 Score=21.41 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=37.9
Q ss_pred CCCChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhc--ccceEEEEe
Q psy12424 243 LPILYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG--LAWIIGKVT 303 (324)
Q Consensus 243 iP~~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~--~~~~IG~V~ 303 (324)
+..+..+...+..+++. |-.|+-+| .-| .++.-+.++.++|++.+++ +...+-+|.
T Consensus 17 VGFR~~~~~~A~~lgl~G~V~N~~DG-sVe----iva~G~~~~v~~~~~~l~~g~~~a~V~~v~ 75 (92)
T COG1254 17 VGFRYFTRSEALRLGLTGWVKNLDDG-SVE----IVAEGPDEAVEKFIEWLRKGPPAAKVERVE 75 (92)
T ss_pred ccHHHHHHHHHHHCCCEEEEEECCCC-eEE----EEEEcCHHHHHHHHHHHHhCCCceEEEEEE
Confidence 44556677777777765 55556555 234 7777788889999999987 555566553
No 68
>PRK07004 replicative DNA helicase; Provisional
Probab=21.58 E-value=1.3e+02 Score=29.73 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=30.9
Q ss_pred CcchhhhhHhhhhcCC-CCChhHHhhHHHHHHHHHHHHHHHhCCeeeC
Q psy12424 64 GVTDIDALQMIVGIST-QLTEDERDIIVPMLIEGFKAQASVAGVNISK 110 (324)
Q Consensus 64 Ga~P~~~~l~~l~~p~-~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivG 110 (324)
|...+. ++++|.+=. ..+.+.....+.++.++++..|++++|||+-
T Consensus 323 ~~~~lv-iIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 369 (460)
T PRK07004 323 GKLGLI-IIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 369 (460)
T ss_pred CCCCEE-EEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 434443 368877622 1111223467899999999999999999884
No 69
>PRK14450 acylphosphatase; Provisional
Probab=20.60 E-value=2.6e+02 Score=20.71 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=34.0
Q ss_pred ChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhc--ccceEEEEe
Q psy12424 246 LYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG--LAWIIGKVT 303 (324)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~--~~~~IG~V~ 303 (324)
++.+...+..+++. |-.|+.+|-+-| +++.-+++..++|++.+++ +...|=+|.
T Consensus 18 R~~v~~~A~~~~l~G~V~N~~dG~~Ve----i~~~G~~~~v~~f~~~l~~gp~~a~V~~v~ 74 (91)
T PRK14450 18 RDFTRTQATRLGLCGYAKNLANGNEVE----VVAEGDKDSLLEFLDLLRSGPPRAEVKEVE 74 (91)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCEEE----EEEEeCHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 45566666666554 444454442233 6677788889999999987 445555554
Done!