Query psy12424
Match_columns 324
No_of_seqs 147 out of 1248
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:57:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fd5_A Selenide, water dikinas 100.0 1.9E-60 6.6E-65 454.3 26.9 310 6-322 63-379 (394)
2 2zod_A Selenide, water dikinas 100.0 2.1E-53 7.1E-58 400.2 20.3 274 8-311 47-344 (345)
3 2yyd_A Selenide, water dikinas 100.0 4.1E-53 1.4E-57 397.5 20.4 273 8-307 47-341 (345)
4 3u0o_A Selenide, water dikinas 100.0 2.3E-51 8E-56 386.0 22.9 277 3-305 36-337 (347)
5 3mcq_A Thiamine-monophosphate 100.0 3.3E-51 1.1E-55 381.2 21.2 282 6-321 19-311 (319)
6 3vti_C Hydrogenase maturation 100.0 1.1E-47 3.7E-52 356.9 19.2 270 4-313 12-294 (314)
7 2rb9_A HYPE protein; hydrogena 100.0 3.7E-47 1.3E-51 356.0 17.9 277 4-312 25-313 (334)
8 2z1u_A Hydrogenase expression/ 100.0 8.4E-46 2.9E-50 348.1 16.8 259 9-304 36-307 (343)
9 3c9u_A Thiamine monophosphate 100.0 1.4E-45 4.8E-50 345.7 17.3 267 12-318 61-334 (342)
10 2yxz_A Thiamin-monophosphate k 100.0 2.4E-45 8.2E-50 340.7 18.2 271 7-318 24-303 (311)
11 3p4e_A Phosphoribosylformylgly 100.0 9.6E-46 3.3E-50 347.8 14.8 276 9-306 44-340 (349)
12 3m84_A Phosphoribosylformylgly 100.0 4.5E-45 1.5E-49 343.5 15.3 283 9-311 40-349 (350)
13 2z1e_A Hydrogenase expression/ 100.0 2.3E-44 7.8E-49 337.8 19.0 264 8-312 37-317 (338)
14 2z01_A Phosphoribosylformylgly 100.0 2.3E-44 7.9E-49 338.9 14.1 281 9-313 38-344 (348)
15 2btu_A Phosphoribosyl-aminoimi 100.0 9.6E-44 3.3E-48 334.5 15.0 283 9-311 36-340 (346)
16 2v9y_A Phosphoribosylformylgly 100.0 9.6E-42 3.3E-46 319.1 13.7 286 9-312 8-319 (334)
17 3ac6_A Phosphoribosylformylgly 100.0 2.2E-37 7.5E-42 316.5 18.0 280 9-320 63-355 (725)
18 1vk3_A Phosphoribosylformylgly 100.0 2.9E-37 1E-41 309.5 17.7 268 9-317 60-340 (615)
19 3ac6_A Phosphoribosylformylgly 100.0 3.2E-36 1.1E-40 307.9 19.4 269 7-316 422-702 (725)
20 3mdo_A Putative phosphoribosyl 100.0 3.6E-34 1.2E-38 267.8 13.7 284 11-313 32-382 (389)
21 3kiz_A Phosphoribosylformylgly 100.0 5.8E-34 2E-38 266.8 13.3 285 11-313 33-385 (394)
22 3ugj_A Phosphoribosylformylgly 100.0 8.8E-30 3E-34 269.8 21.5 263 11-317 684-980 (1303)
23 1vk3_A Phosphoribosylformylgly 100.0 3.6E-29 1.2E-33 250.9 10.8 213 7-303 393-614 (615)
24 3ugj_A Phosphoribosylformylgly 99.9 5.3E-24 1.8E-28 225.8 18.9 282 9-314 262-599 (1303)
25 1ihj_A INAD; intermolecular di 30.2 32 0.0011 24.3 2.6 48 103-150 18-66 (98)
26 2h2b_A Tight junction protein 22.9 75 0.0026 22.7 3.6 46 103-150 20-66 (107)
27 3qi7_A Putative transcriptiona 21.6 81 0.0028 28.9 4.2 55 43-109 138-192 (371)
28 3jxo_A TRKA-N domain protein; 21.5 1.1E+02 0.0036 20.9 4.0 31 122-152 40-73 (86)
No 1
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=100.00 E-value=1.9e-60 Score=454.27 Aligned_cols=310 Identities=47% Similarity=0.854 Sum_probs=260.4
Q ss_pred CCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
.|.+++||||||++++++ +..|++|||+|+|.+.+||++||+|+++|+|||+||||+|++++++++++|+.+++++
T Consensus 63 ~~~l~~GdDaAV~~~~~~----~~~lv~ttD~f~p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~p~~~~~~~ 138 (394)
T 3fd5_A 63 MPRLGIGMDTCVIPLRHG----GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRE 138 (394)
T ss_dssp CCCBCTTSSSEEEECSST----TCEEEEEEEEECCCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEEETTSCHHH
T ss_pred cccccCCCCeeEEecCCC----CcEEEEEeeccCCcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEecCCCCChhH
Confidence 466899999999999742 4689999999988889999999999999999999999999975467889998888765
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhh
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLK 165 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~ 165 (324)
.+++++++++||+++|+++|++|+||||..+|++.+++|++|.+++++++++++++|||.|++||++|.+....+++++.
T Consensus 139 ~~~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~p~~~i~~t~~G~v~~~~~l~~~~a~~GD~Iiltg~lG~~~~~~~~~~l~ 218 (394)
T 3fd5_A 139 RDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLD 218 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEEEESSCEEEEEEEEEECGGGCCCTTCCCTTCEEEESSCBCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeeEEEcCCcEEEEEEEEEEcCCceecCCCCCCCCEEEEECCccHHHHHHHHHHhh
Confidence 66799999999999999999999999999999999999999999888899999999999999999999987655554433
Q ss_pred hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCC
Q psy12424 166 NEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245 (324)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~ 245 (324)
..++|..+... ++++.+.+.+....+.|.++++.++.+++++++|||||||+|||+++|+||+++|++|++|+++++|+
T Consensus 219 ~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~v~A~~DvT~gGL~~~L~ema~aSgvg~~I~~~~iPi 297 (394)
T 3fd5_A 219 IPEKWNKIKLV-VTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPV 297 (394)
T ss_dssp ----------C-CCHHHHHHHHHHHHHHHHSCSHHHHHHHHHTTCCEEEECCTTHHHHHHHHHHTTCSSSEEEEEEEEEE
T ss_pred ccchhhhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEeCCCcHHHHHHHHHHHhcCCcEEEEeccCCC
Confidence 22233322222 56655555555555666667666667777888999999999999999999999999999999999999
Q ss_pred ChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-------ccceEEEEecCCCcEEEecCCceE
Q psy12424 246 LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-------LAWIIGKVTPGDRSVIIKDSPDIF 318 (324)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-------~~~~IG~V~~~~~~~~l~~~~~~~ 318 (324)
++.+.++|+.+++.|. +++|+||||+|+||++|++++++++++.+++ ++++||+|+++++.+++..+++++
T Consensus 298 ~~~~~~~~~~~~~~~~--l~~g~d~etsGgLL~~v~~~~~~~~~~~l~~~~~~~g~~a~~IG~V~~~~~~~~l~~~g~~i 375 (394)
T 3fd5_A 298 LAKMAAVSKACGNMFG--LMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRII 375 (394)
T ss_dssp ETTHHHHHHHTTTSSC--GGGTCCCCSSCCEEEEECHHHHHHHHHHHHCC---CCCCCEEEEEEEESSSCEEEEEEEEEE
T ss_pred CHHHHHHHHhcchhhh--hhcccCcccCCcEEEEECHHHHHHHHHHHHhccccCCCCEEEEEEEEeCCceEEEEECCEEE
Confidence 9999999988775444 7789999999999999999999999998863 689999999987777888899998
Q ss_pred eecc
Q psy12424 319 HVTL 322 (324)
Q Consensus 319 ~~~~ 322 (324)
+++.
T Consensus 376 ~~~~ 379 (394)
T 3fd5_A 376 EVAP 379 (394)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8863
No 2
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=100.00 E-value=2.1e-53 Score=400.23 Aligned_cols=274 Identities=26% Similarity=0.365 Sum_probs=220.3
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC-CChhHH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ-LTEDER 86 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~-~~~~~~ 86 (324)
.+|+||||||++.+ +..+++|||++.|.+++||++||+|+++|+|||+||||+|+++ ++++++|+. .+.
T Consensus 47 ~~g~GDDaAvi~~~------~~~lv~ttD~~~~~v~~P~~~G~~Av~~~lsDiaAmGa~P~~~-l~~l~~p~~~~~~--- 116 (345)
T 2zod_A 47 LVSIGDDAGVYEHN------GIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNA-LAISCFNNCELDI--- 116 (345)
T ss_dssp ------CCCEEEET------TEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEECTTTCCH---
T ss_pred ccCCCCCeEEEecC------CcEEEEEecCCCCcccCHHHHHHHHHHHHHHHHHHcCCCchhh-hhhhhcCCCcCCH---
Confidence 46899999999975 4789999999999999999999999999999999999999987 577889864 444
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhh
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKN 166 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~ 166 (324)
++++++++||+++|+++|++++||||..++.+.+++|++|.+++++++++++++|||.|++||++|.+.....+.. .
T Consensus 117 -~~l~~~~~Gi~~~~~~~gv~lvGGdt~~~~~~~i~~t~~G~~~~~~~~~~~~a~~GD~iivtg~lG~~~~~~~~~~--~ 193 (345)
T 2zod_A 117 -EIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKE--G 193 (345)
T ss_dssp -HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCEEEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHT--T
T ss_pred -HHHHHHHHHHHHHHHhccCcccCCceEECCcCcccceeEEEecCccccccccCCCCCeEEEcCCCcchhHHHHHhh--c
Confidence 7899999999999999999999999999999999999999999889999999999999999999998765333221 0
Q ss_pred hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCC
Q psy12424 167 EEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPIL 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~ 246 (324)
. ...+... ...+.+.+++......+...++++|||+|+|||+++|+||+++|++|++|+++++|++
T Consensus 194 -----~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~a~~Dit~~GL~~~L~eia~~S~vg~~I~~~~iP~~ 259 (345)
T 2zod_A 194 -----I-----LKEEDIN----EAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYY 259 (345)
T ss_dssp -----S-----SCGGGGH----HHHHHHHSCSHHHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBC
T ss_pred -----c-----ccchhhh----hhHHhhhccchhHhhhhcccccceeeccccchHHHHHHHHHhccCCCeEeeccccCcC
Confidence 0 1222111 1223344445554566677789999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCC--------------------cccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEe
Q psy12424 247 YPLGVIASRPGT--------------------RFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVT 303 (324)
Q Consensus 247 ~~~~~~~~~~~~--------------------~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~ 303 (324)
+.++++++..-. +|+ +.-.+|+||||+|||+|||++++++++.+++ ++++||+|+
T Consensus 260 ~~~~~~~~~g~~p~~~~~n~~~~~~~~~~~~~~~~--~~ll~DpqTSGGLL~tv~~~~~~~~~~~l~~~g~~a~~IG~V~ 337 (345)
T 2zod_A 260 QLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWK--LILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETI 337 (345)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHH--HHHHHCCCSSCCEEEEECGGGGGTHHHHHHHHTCCCEEEEEEE
T ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHhhcCCCHHH--HHhccCccccCcEEEEEcHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 999988874200 111 1113678999999999999999999998887 899999999
Q ss_pred cCCCcEEE
Q psy12424 304 PGDRSVII 311 (324)
Q Consensus 304 ~~~~~~~l 311 (324)
+++ ++++
T Consensus 338 ~~~-~~~V 344 (345)
T 2zod_A 338 AEN-VLEV 344 (345)
T ss_dssp SSS-SEEE
T ss_pred cCC-CCEE
Confidence 875 4543
No 3
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=100.00 E-value=4.1e-53 Score=397.52 Aligned_cols=273 Identities=26% Similarity=0.355 Sum_probs=221.3
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC-CChhHH
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ-LTEDER 86 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~-~~~~~~ 86 (324)
.+++||||||+++++ +. |++|||+|.+.+.+||++||++|++|+|||+||||+|+++ ++++++|+. +++
T Consensus 47 ~~g~GdDaAvi~~~~-----~~-lv~ttD~~~~~~~~p~~~G~~ava~~lsDlaamGa~P~~~-l~~l~~p~~~~~~--- 116 (345)
T 2yyd_A 47 LVSIGDDAGVYEHNG-----II-WVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNA-LAISCFNNCELDI--- 116 (345)
T ss_dssp ------CCCEEEETT-----EE-EEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEECTTTCCH---
T ss_pred eecCCCCeEEEEECC-----Ce-EEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCchHHH-heeEeCCCCCCCH---
Confidence 358999999999986 44 9999999988888999999999999999999999999987 688999986 666
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhhh
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKN 166 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~~ 166 (324)
++++++++||+++|+++|++++||||.+++++++++|++|.+++++++++++++|||.|++||++|.+.+...+..
T Consensus 117 -~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~Iivtg~lG~~~~~~~~~~--- 192 (345)
T 2yyd_A 117 -EIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKE--- 192 (345)
T ss_dssp -HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCEEEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHT---
T ss_pred -HHHHHHHHHHHHHHHHcCCEEEeeEcccCCCceEEEEEEEEEcCCceecCCCCCCCCEEEEECCCcHHHHHHHHHh---
Confidence 6999999999999999999999999999999999999999998888999999999999999999997665333321
Q ss_pred hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCC
Q psy12424 167 EEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPIL 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~ 246 (324)
.. ++++.++ .+.+.+.++++.+..++++..+++|||||+|||+++|+||+++|++|++|+++++|++
T Consensus 193 ----~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~gGL~~~L~e~a~~sgvg~~I~~~~iPi~ 259 (345)
T 2yyd_A 193 ----GI-----LKEEDIN----EAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYY 259 (345)
T ss_dssp ----TS-----SCGGGGH----HHHHHHHSCSHHHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBC
T ss_pred ----cC-----CCHHHHH----HHHHHHhcccHHHHHHHHhcCCeEEEECCCcHHHHHHHHHHHHcCCcEEEEhhcCCCC
Confidence 10 2333222 2234445555555566777789999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCc---------ccccc------c---CCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecC
Q psy12424 247 YPLGVIASRPGTR---------FYQNV------N---RGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPG 305 (324)
Q Consensus 247 ~~~~~~~~~~~~~---------~~~~l------~---~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~ 305 (324)
+.+.++|+..... ++..+ + -.||+||+|+||++|||++++++++.+++ ++++||+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~~~~~~llfdp~tsGgll~~v~~~~~~~~~~~l~~~g~~a~vIG~v~~~ 339 (345)
T 2yyd_A 260 QLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAE 339 (345)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHHHHHHHSCCSSCCEEEEECGGGGGTHHHHHHHHTCCCEEEEEEESS
T ss_pred HHHHHHHHcCCCCcchhhhHHHHHhhccccCHHHHHhhccCcccCceEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEeeC
Confidence 9999988863111 00001 0 12455899999999999999999998886 89999999987
Q ss_pred CC
Q psy12424 306 DR 307 (324)
Q Consensus 306 ~~ 307 (324)
+.
T Consensus 340 ~~ 341 (345)
T 2yyd_A 340 NV 341 (345)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 4
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=2.3e-51 Score=385.98 Aligned_cols=277 Identities=25% Similarity=0.300 Sum_probs=225.5
Q ss_pred CCCCCCC--CC--CCCeeEEeCCCCCCCCCceEEEeecCCCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcC
Q psy12424 3 GYSLVRI--EI--GLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIS 78 (324)
Q Consensus 3 ~~~~~~~--~~--gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p 78 (324)
++.+|.+ |+ ||||||+++++ +..|++|||+|.|.+.+||++||+++++|+|||+||||+|+++ ++++++|
T Consensus 36 ~~~~~~v~vg~~~gdDaavi~~~~-----~~~lv~ttD~~~~~~~~p~~~G~~ava~~lsDiaamGA~P~~~-l~~l~~p 109 (347)
T 3u0o_A 36 KFVDPNLLVGNETRDDAAVYDLGN-----GTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA-IAILGWP 109 (347)
T ss_dssp SSCCCSSBCSCSSCCSSEEEECTT-----SEEEEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEEC
T ss_pred CCCCCCeEECCCCCCceEEEEeCC-----CcEEEEEecCCCCCccCHHHHHHHHHHHHHHHHHHcCCchHHH-HhheeCC
Confidence 3455654 55 99999999987 5789999999988889999999999999999999999999987 6889998
Q ss_pred -CCCChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 79 -TQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 79 -~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
++.++ ++++++++||+++|+++|++++||||.++|++.+++|++|.+++++++++++++|||.|++||++|.+.+
T Consensus 110 ~~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~~~~~~~t~vG~v~~~~~~~~~~a~~GD~iiltg~~G~~~~ 185 (347)
T 3u0o_A 110 INKLSP----EIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPLGIGVL 185 (347)
T ss_dssp TTTSCH----HHHHHHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEEEEEGGGCCCSSCCCTTCEEEESSCBCHHHH
T ss_pred CCCCCH----HHHHHHHHHHHHHHHHcCCEEEcceeccCCCcEEEEEEEEEECCcceecCCCCCCCCEEEEeCCccHHHH
Confidence 45565 6999999999999999999999999999999999999999999888999999999999999999998765
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
.+++.. +. ++.+.. ..+.+.+.++++...+++++.++|+|||||+|||+++|+||+++|++|++
T Consensus 186 ~~~~~~-------~~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~~~v~a~~DiT~gGL~~~L~e~a~~sgvg~~ 249 (347)
T 3u0o_A 186 TTAEKK-------SL-----LKPEHQ----GLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQAR 249 (347)
T ss_dssp HHHHHT-------TC-----CCGGGT----THHHHHHHSCCTHHHHHTTCTTEEEEEECCSSHHHHHHHHHHHHHTEEEE
T ss_pred HHHHHh-------Cc-----CChHHH----HHHHHHHHhhchHHHHHHhcCCCEEEEcCCCcHHHHHHHHHHHHcCCeEE
Confidence 444321 11 222211 11233344444443456666679999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccc----ccc-------------CCCCccccceEEEEEchhhHHHHHHHHhc---ccc
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQ----NVN-------------RGHGIETSGGLFICLPEDHAKDFIKEMNG---LAW 297 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~----~l~-------------~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~ 297 (324)
|++++||+++.++++|+.......+ .++ -.+|++++|+||++|++++++++++.+++ +++
T Consensus 250 I~~~~iPi~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~l~~~~~~ll~dp~~sggll~~v~~~~~~~~~~~l~~~g~~a~ 329 (347)
T 3u0o_A 250 VDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELT 329 (347)
T ss_dssp EETTTSCBCTTHHHHHTTCCCCHHHHHHHHHHGGGBCCCCHHHHHHHTCCCTTCCEEEEECHHHHHHHHHHHHHTTCCCC
T ss_pred EeeccCCCCHHHHHHHHcCCCCchhhhhhhhhcccccccchHHHHhccCcccCccEEEEEcHHHHHHHHHHHHHcCCCeE
Confidence 9999999999999998752211000 000 13677899999999999999999999886 899
Q ss_pred eEEEEecC
Q psy12424 298 IIGKVTPG 305 (324)
Q Consensus 298 ~IG~V~~~ 305 (324)
+||+|++.
T Consensus 330 ~IG~V~~~ 337 (347)
T 3u0o_A 330 AIGELVPA 337 (347)
T ss_dssp CCEEEEEC
T ss_pred EEEEEeec
Confidence 99999874
No 5
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=100.00 E-value=3.3e-51 Score=381.19 Aligned_cols=282 Identities=17% Similarity=0.217 Sum_probs=225.4
Q ss_pred CCCCCCCCCeeEEeCCCCCCCCCceEEEeecC------CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCC
Q psy12424 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDF------FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGIST 79 (324)
Q Consensus 6 ~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~------~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~ 79 (324)
+..+++||||||+++++ +..|++|||+ |.+.. +||++||++|++|+|||+||||+|+++ ++++++|+
T Consensus 19 ~~~~g~GdDaavi~~~~-----~~~lv~ttD~~~~~~hf~~~~-~p~~~G~~ava~~lsDiaamGa~P~~~-l~~l~~p~ 91 (319)
T 3mcq_A 19 SAVLGVGDDAALIQPSP-----GMELAVSADMLVANTHFYPNI-DPWLIGWKSLAVNISDMAAMGAQPRWA-TLTIALPE 91 (319)
T ss_dssp CTTTCCCGGGGCCCCCT-----TCEEEEEEEEEECCTTSCCCS-CHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEESS
T ss_pred CcccCCCCCEEEEeeCC-----CCeEEEEecccCcccCCCCCC-CHHHHHHHHHHHHHHHHHHcCCchHHh-EEEEECCC
Confidence 34578999999999976 5789999996 34444 999999999999999999999999987 68899995
Q ss_pred CCChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHH
Q psy12424 80 QLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVT 159 (324)
Q Consensus 80 ~~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~ 159 (324)
+++ ++++++++||+++|+++|++++||||+.++ +++++|++|.+++++++++++++|||.|++||++|.+..
T Consensus 92 -~~~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~-~~i~~t~iG~v~~~~~~~~~~a~~GD~ii~tg~~G~~~~-- 163 (319)
T 3mcq_A 92 -ADE----DWISKFAAGFFACAAQFDIALIGGDTTRGP-LTISVQIMGETPPGASLLRSTARADDDIWVSGPLGDAAL-- 163 (319)
T ss_dssp -CCH----HHHHHHHHHHHHHHHHTTCEEEEEEEEESS-CEEEEEEEEEECTTCCCCSSCCCTTEEEEECSCCSHHHH--
T ss_pred -CCH----HHHHHHHHHHHHHHHHcCCeEEeeEcCCCC-eEEEEEEEEeeCCCcccccCCCCCCCEEEEECCccHHHH--
Confidence 666 589999999999999999999999999987 899999999999888999999999999999999998765
Q ss_pred HHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 160 IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATIN--KKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
++.+++. .. . ++.+..+. ..+.+.++. ..+...++. .++||||||| ||+++|+||+++|++|++
T Consensus 164 g~~~~~~--~~---~---~~~~~~~~----~~~~~~~p~~~~~~~~~l~~-~v~a~~DiS~-GL~~~L~e~a~~s~vg~~ 229 (319)
T 3mcq_A 164 ALAAIQG--RY---P---LSDTELAA----CGKALHQPQPRVVLGQALRG-LAHSALDISD-GLLADLGHILEHSQVGAE 229 (319)
T ss_dssp HHHHHTT--SS---C---CCHHHHHH----HHHHHHCCCCCHHHHHHTTT-TEEEEEECSS-CHHHHHHHHHHHHTCEEE
T ss_pred HHHHHhc--CC---C---CChHHHHH----HHHHHhCCCccHHHHHHHhc-cCcEEEEccH-hHHHHHHHHHHHcCCcEE
Confidence 4443321 10 1 33333222 223333322 122344444 4999999999 999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecC
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDS 314 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~ 314 (324)
|+++++|+++.+.++|+..+. ++..+++|.+|+ ||++|||++++++++.+++ ++++||+|+++++.+.+..+
T Consensus 230 i~~~~iP~~~~~~~~~~~~~~-~~~~l~~G~d~~----ll~~v~~~~~~~~~~~l~~~g~~~~~IG~V~~~~~~~~~~~~ 304 (319)
T 3mcq_A 230 VWLKAIPKSEVVSAHSQEVAI-QKMILSGGDDYE----LCFTASTQHRQQIADIGRQLSLDMAVIGRITDTQQLVIHGLD 304 (319)
T ss_dssp EEGGGSCCCHHHHHTTTSHHH-HHHHHHCSCCCC----EEEEEEGGGHHHHHHHHHHTTCCCEEEEEEESSCCEEEECTT
T ss_pred EeecccCCCHHHHHHHhcCCH-HHHHHcCCCcee----EEEEEcHHHHHHHHHHHHHcCCCcEEEEEEEeCCceEEEcCC
Confidence 999999999999988875432 233466788887 9999999999999998886 89999999987654444467
Q ss_pred CceEeec
Q psy12424 315 PDIFHVT 321 (324)
Q Consensus 315 ~~~~~~~ 321 (324)
++.++++
T Consensus 305 g~~~~~~ 311 (319)
T 3mcq_A 305 DAPLTLK 311 (319)
T ss_dssp CCEEC--
T ss_pred CCCccCC
Confidence 7776543
No 6
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=100.00 E-value=1.1e-47 Score=356.87 Aligned_cols=270 Identities=19% Similarity=0.200 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCeeEEeCCCCCCCCCceEEEeecCC--CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 4 YSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFF--YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 4 ~~~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~--~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
+.+|.+++|||||+++ . .+++|||++ .|.+.+|+++||++|++|+|||+||||+|+++ ++++++|+++
T Consensus 12 ~~~~~l~~gdDaav~~--~-------~l~~t~D~~v~~~~~~~~~~iG~~ava~~~sDiaamGA~P~~~-~~~l~~p~~~ 81 (314)
T 3vti_C 12 FDNEYIRAMEDAALLF--G-------NITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMRGAKPLFL-TAAFIIEEGF 81 (314)
T ss_dssp TCSHHHHHTCSSEEET--T-------TEEEEEEEECCSSSEETTEEHHHHHHHHHHHHTTTTTEEEEEE-EEEEEEETTC
T ss_pred cCCcCcCCCCCeEEec--C-------ceEEEecCCccCCcccCccHHHHHHHHHHHHHHHHcCCcccee-EEEEEcCCCC
Confidence 4567789999999997 2 499999986 23334789999999999999999999999987 6878999877
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+. ++++++++||+++|+++|++++||||++++ .+++++|++|.+++++++++++++|||.|++||++|.+.
T Consensus 82 ~~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~i~~tg~~G~~~ 157 (314)
T 3vti_C 82 PV----EDLKKIVKSMAEAAKEAGVKIVAGDTKVVEKGSVDRIFINTSGIGVLYEGANVSIKNAKPGDIVLISGTIGDHG 157 (314)
T ss_dssp CH----HHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTSBSSEEEEEEEEEEECTTCCCCTTCCCTTCEEEESSCSSHHH
T ss_pred CH----HHHHHHHHHHHHHHHHcCCeEEeeeeEEccCCCcCCeEEEEEEEEEECCCccccccCCCCCCEEEEECChHHHH
Confidence 66 799999999999999999999999999876 467889999999988899999999999999999999874
Q ss_pred HHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCeEeeccCCccccchhHHhhhhCCCe
Q psy12424 157 SVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKK-YNAHACTDVTGYGLTGHATNLVKYQTNS 235 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~a~~DiS~GGL~~~L~~la~~s~~g 235 (324)
. ++.+.+....+ ... +... +..+++....+++. ..+++|||+|+|||+.+|+||+++|++|
T Consensus 158 ~--~~~~~~~~~~~---~~~-~~~~------------~~~~~~~~~~l~~~~~~v~a~~DiS~GGL~~~L~e~a~~sgvg 219 (314)
T 3vti_C 158 M--AVMSAREELQF---DTP-IFSD------------VAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVG 219 (314)
T ss_dssp H--HHHHHHTTCCC---SSC-CCCC------------CCCCHHHHHHHGGGGGGEEEEECCCTTHHHHHHHHHHHHHTCE
T ss_pred H--HHHHhhcCCCc---chh-hHHh------------hccHHHHHHHHHhccCCcEEEEeCCCcHHHHHHHHHHHHcCCe
Confidence 3 44432211000 000 1110 00001111223333 3599999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHh--c---ccceEEEEecCCCcEE
Q psy12424 236 VNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMN--G---LAWIIGKVTPGDRSVI 310 (324)
Q Consensus 236 ~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~--~---~~~~IG~V~~~~~~~~ 310 (324)
++|+++++|+++.+.++++.++.+. +..+++|+||++|++++++++++.++ . ++++||+| +++++++
T Consensus 220 ~~I~~~~iP~~~~~~~~~~~~~~~~-------l~~~~~g~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v-~~~~~v~ 291 (314)
T 3vti_C 220 IKIYEEKLPVKESVKSACEFMGIDF-------LHLANEGKVVVVVERDYAEKALEIMKSHEYGKDAEIIGEV-NDSKLVT 291 (314)
T ss_dssp EEEEGGGCCCCHHHHHHHHHHTCCG-------GGSCCSSCCEEEECGGGHHHHHHHHHTSTTCTTCEEEEEE-ESSSCEE
T ss_pred EEEehhcCCCCHHHHHHHHHhCCCH-------HHHHhCCcEEEEECHHHHHHHHHHHhhCcCCCCeEEEEEE-CCCCeEE
Confidence 9999999999999999888765432 23456778999999999999999987 3 89999999 6666677
Q ss_pred Eec
Q psy12424 311 IKD 313 (324)
Q Consensus 311 l~~ 313 (324)
+..
T Consensus 292 l~~ 294 (314)
T 3vti_C 292 INT 294 (314)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 7
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=100.00 E-value=3.7e-47 Score=356.00 Aligned_cols=277 Identities=17% Similarity=0.160 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCeeEEeCCCCCCCCCceEEEeecCCC--CccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 4 YSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFY--PLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 4 ~~~~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~--~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
|.++.+++|||||++++++. +.++..|++|+|++. |+..+++++||+||++|+|||+||||+|+++ ++++++|.++
T Consensus 25 ~~~~~l~~gdDaavi~~~~~-~~~~~~l~~t~D~~~~dp~~~~~~~iG~~ava~~lsDlaamGA~P~~~-~~~l~~p~~~ 102 (334)
T 2rb9_A 25 FANPWLAEQEDQARLDLAQL-VAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYL-SCGFILEEGL 102 (334)
T ss_dssp HCCTTTTTCCSSEEEEHHHH-HHHCSEEEEEEEEECCSSSEETTEEHHHHHHHHHHHHHHTTTCCCCEE-EEEEEEETTC
T ss_pred cCccccCCCCceEEEecCcc-cCCCceEEEEecCcccCCccCCcccHHHHHHHHHHHHHHHCCCchHHh-EEEEecCCCC
Confidence 45678899999999998520 000147999999753 2222334779999999999999999999987 6889998777
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+. ++++++++||+++|+++|++++||||++++ .+++++|++|.+++.+.+++++++|||.|+++|++|.+.
T Consensus 103 ~~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~Iivtg~~G~~g 178 (334)
T 2rb9_A 103 PM----ETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPTNIHWGAQTLTAGDILLVSGTLGDHG 178 (334)
T ss_dssp CH----HHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSBSSEEEEEEEEEEECTTCCCCGGGCCTTCEEEESSCSSHHH
T ss_pred CH----HHHHHHHHHHHHHHHHcCCEEEeeEeEEccCCCCCceEEEEEEEEEECcccccccccCCCCCEEEEECCchHHH
Confidence 66 689999999999999999999999999875 578999999999988889999999999999999999864
Q ss_pred HHHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeE
Q psy12424 157 SVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSV 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~ 236 (324)
. ++...+.. .. +++. +.+ .+..+++....++++..+++|||||+|||+++|+||+++|++|+
T Consensus 179 ~--~~~~~~~~--~~------~~~~-~~~-------~~~~l~~~~~~l~~~~~v~a~~Dis~GGL~~~l~ema~~s~vg~ 240 (334)
T 2rb9_A 179 A--TILNLREQ--LG------LDGE-LVS-------DCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGI 240 (334)
T ss_dssp H--HHHHHHHT--CS------CTTT-CCC-------CCCCCHHHHHTTTTCTTEEEEEECCTTHHHHHHHHHHHHHTCEE
T ss_pred H--HHHHhhcc--CC------CChH-HHH-------hhhhhHHHHHHHHhcCCeEEEEECCCccHHHHHHHHHHHcCCeE
Confidence 3 55433211 10 1110 000 00011111122344446999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-----ccceEEEEecCCCcEEE
Q psy12424 237 NFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-----LAWIIGKVTPGDRSVII 311 (324)
Q Consensus 237 ~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-----~~~~IG~V~~~~~~~~l 311 (324)
+|+++++|+++.+.++++.++.+. +..-++|+||+++++++++++++.+++ ++++||+|+++++ +++
T Consensus 241 ~i~~~~iP~~~~~~~~~~~~~~~~-------~~~~~~G~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~~-v~~ 312 (334)
T 2rb9_A 241 EISESALPVKPAVRGVCELLGLDA-------LNFANEGKLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKG-VRL 312 (334)
T ss_dssp EEETTTCCCCHHHHHHHHHHCCCT-------TTSCCSSCEEEEECGGGHHHHHHHHHTSGGGTTCEEEEEEESSCS-EEE
T ss_pred EEeccCCCCCHHHHHHHHHcCCCH-------HHHhhcCeEEEEEChHHHHHHHHHHhhcCCCCCEEEEEEEEeCCc-EEE
Confidence 999999999999999988655432 112245679999999999999988853 6899999997654 555
Q ss_pred e
Q psy12424 312 K 312 (324)
Q Consensus 312 ~ 312 (324)
.
T Consensus 313 ~ 313 (334)
T 2rb9_A 313 A 313 (334)
T ss_dssp E
T ss_pred E
Confidence 4
No 8
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=100.00 E-value=8.4e-46 Score=348.06 Aligned_cols=259 Identities=19% Similarity=0.183 Sum_probs=202.1
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCC--CccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHH
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFY--PLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDER 86 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~--~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~ 86 (324)
+++||||||++++ + .|++|||++. |+...++++||++|++|+|||+||||+|+++ ++++++|.+++.
T Consensus 36 ~~~GdDaav~~~~------~-~lv~ttD~~~~~p~~~~~~~iG~~ava~~lsDlaamGA~P~~~-~~~l~~p~~~~~--- 104 (343)
T 2z1u_A 36 LGTLNDAARLDLT------G-PLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARPRYL-SCGFILEEGLDM--- 104 (343)
T ss_dssp HHTCSSSCCCCCC------S-SEEEEEEEECCSSSEETTEEHHHHHHHHHHHHHHTTTEEEEEE-EEEEEEETTCCH---
T ss_pred CCCCCceEEEECC------C-eEEEEeCCCCcCCeecCCccHHHHHHHHHHHHHHHcCCeeHHh-heeeecCCCCCH---
Confidence 5789999999875 4 7999999753 1112344569999999999999999999987 688999977766
Q ss_pred hhHHHHHHHHHHHHHHHhCCeeeCccccccC-----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHH
Q psy12424 87 DIIVPMLIEGFKAQASVAGVNISKVAVKLNP-----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIR 161 (324)
Q Consensus 87 ~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~ 161 (324)
++++++++||+++|+++|++++||||++++ .+++++|++|.+++.+.+++++++|||.|+++|++|.+.. ++
T Consensus 105 -~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~I~vtg~~G~~g~--~~ 181 (343)
T 2z1u_A 105 -DILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGL--TI 181 (343)
T ss_dssp -HHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTSSSSEEEEEEEEEEECCSSCCCGGGCCTTCEEEECSCSSHHHH--HH
T ss_pred -HHHHHHHHHHHHHHHHhCCEEECcEEEEcCCCCCCCeEEEEEEEEEECCCccccccCCCCCCEEEEECCccHHHH--HH
Confidence 589999999999999999999999999876 5789999999998888899999999999999999998643 45
Q ss_pred HhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCeEeeccCCccccchhHHhhhhCCCeEEEEe
Q psy12424 162 SWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKK-YNAHACTDVTGYGLTGHATNLVKYQTNSVNFMI 240 (324)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~ 240 (324)
...+.. .. +++. +.+ .+..+++....+++. ..+++|||||+|||+.+|+||+++|++|++|+.
T Consensus 182 ~~~~~~--~~------~~~~-~~~-------~~~~~~~~~~~~~~~~~~v~a~~Dis~GGL~~~L~e~a~~s~vg~~I~~ 245 (343)
T 2z1u_A 182 LSQRQG--LN------FAAD-VCS-------DSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLE 245 (343)
T ss_dssp HHHTTT--CC------CCTT-CCC-------CCCCCHHHHHHHHHHTCCCCEEECCCTTHHHHHHHHHHHHHTSEEEEEG
T ss_pred HHHhcc--cC------cchH-HHH-------hhhhHHHHHHHHHhccCCceEEEeCCCchHHHHHHHHHHhCCceEEEec
Confidence 433211 00 1110 000 000111111223333 469999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-----ccceEEEEec
Q psy12424 241 HTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-----LAWIIGKVTP 304 (324)
Q Consensus 241 ~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-----~~~~IG~V~~ 304 (324)
+++|+++.+.++++.++.+. +..-++|+||+++++++++++++.+++ ++++||+|++
T Consensus 246 ~~iP~~~~~~~~~~~~~~~~-------~~~~~~G~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~ 307 (343)
T 2z1u_A 246 TAVPVRESVRNGCSFLGLDP-------LYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKS 307 (343)
T ss_dssp GGSCCCHHHHHHHHHTTCCT-------TSSCCSSCCEEEECHHHHHHHHHHHHTSTTGGGCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHhcCCCH-------HHHhccceEEEEECHHHHHHHHHHHhhccCCCCeEEEEEEEe
Confidence 99999999998887655432 222256789999999999999988863 6899999987
No 9
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=100.00 E-value=1.4e-45 Score=345.75 Aligned_cols=267 Identities=20% Similarity=0.230 Sum_probs=206.6
Q ss_pred CCCeeEEeCCCCCCCCCceEEEeecCC------CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 12 GLDSCIIPLASGRSPSPLYLIQSTDFF------YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 12 gdDaavi~~~~~~~~~~~~lv~t~D~~------~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
||||||++++ +..|++|||++ .+. .+||++||++|++|+|||+||||+|+++ ++++++|++++.
T Consensus 61 GdDaAvi~~~------~~~lv~ttD~~~~~~~f~~~-~~p~~iG~~ava~~vsDlaamGA~P~~~-l~~l~~p~~~~~-- 130 (342)
T 3c9u_A 61 GDDTAPVEYC------SKKLLLTTDVLNEGVHFLRS-YIPEAVGWKAISVNVSDVIANGGLPKWA-LISLNLPEDLEV-- 130 (342)
T ss_dssp TSSSEEEEET------TEEEEEEEEEEEBTTTBCTT-SCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEECTTSBH--
T ss_pred CCceEEEecC------CCeEEEEeCccCCCcccCCC-CCHHHHHHHHHHHHHHHHHHCCCchHHh-EEEEecCCCCCH--
Confidence 9999999985 46899999983 333 3599999999999999999999999986 688999976665
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHHHHHhhh
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLK 165 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~~~~~~~ 165 (324)
++++++++||+++|+++|++++||||+.++.+++++|++|. +++.+++++++|||.|+++|++|.+.. ++.+++
T Consensus 131 --~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~i~vt~vG~--~~~~l~~~~a~~GD~IivtG~~G~~~~--g~~~l~ 204 (342)
T 3c9u_A 131 --SYVERFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGE--TERFVGRDGARLGDSVFVSGTLGDSRA--GLELLL 204 (342)
T ss_dssp --HHHHHHHHHHHHHHHHHTCEEEEEEEEECSSCEEEEEEEEE--ESSCCCSSCCCTTCEEEEESCSSHHHH--HHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCCeEEeeEeeecCCeEEEEEEEEe--cCccccccCCCCCCEEEEECchhHHHH--HHHHHh
Confidence 69999999999999999999999999999889999999998 457889999999999999999998754 554432
Q ss_pred hhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCC
Q psy12424 166 NEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245 (324)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~ 245 (324)
. +.. . .. .......+..++++.++.. ...+++. +++|+|||+ ||+.+|+||+++|++|++|+++++|+
T Consensus 205 ~-~~~---~---~~-~~~~~~~~~~~~p~~~~~~--~~~~~~~-v~a~~DiSd-GL~~~L~eia~~sgvg~~Id~~~iP~ 272 (342)
T 3c9u_A 205 M-EKE---E---YE-PFELALIQRHLRPTARIDY--VKHIQKY-ANASMDISD-GLVADANHLAQRSGVKIEILSEKLPL 272 (342)
T ss_dssp T-TCS---C---CC-HHHHHHHHHHHSCCCCGGG--HHHHHHH-CSEEEEESS-CHHHHHHHHHHHHTCEEEECGGGSCC
T ss_pred c-CCc---c---cc-cccHHHHHHHhCchhhHHH--HHHhhcc-CeEEEECCc-hHHHHHHHHHHHhCCeEEEehhcCCC
Confidence 1 110 0 11 1111111111111112221 2233443 899999999 99999999999999999999999999
Q ss_pred ChhHHHHhcccCCc-ccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEecCCCcEEEecCCceE
Q psy12424 246 LYPLGVIASRPGTR-FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKDSPDIF 318 (324)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~~~~~~~~l~~~~~~~ 318 (324)
++.+.++|+.++.+ ++..+++|+||+ ||+++|+++++++ + .+++||+|+++++ + ..+++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~GGEd~~----ll~~v~~~~~~~l----~-~~~~IG~V~~~~~-v--~~~g~~~ 334 (342)
T 3c9u_A 273 SNELKMYCEKYGKNPIEYALFGGEDYQ----LLFTHPKERWNPF----L-DMTEIGRVEEGEG-V--FVDGKKV 334 (342)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHCCCCCE----EEEEECGGGCCTT----S-CEEEEEEEESSSS-E--EETTEEC
T ss_pred CHHHHHHHHHcCCCHHHHHhcCCCceE----EEEEECHHHHhhc----C-CCEEEEEEEcCCC-E--eeCcCCC
Confidence 99999999877765 343457889987 9999999875432 2 3789999997654 3 3556554
No 10
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-45 Score=340.71 Aligned_cols=271 Identities=15% Similarity=0.081 Sum_probs=209.7
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCC-----ccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCC
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP-----LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQL 81 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~-----~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~ 81 (324)
..+++||||||++++ +..|++|||++.+ ...+||++||++|++|+|||+||||+|+++ ++++++|.+.
T Consensus 24 ~~~g~gdDaavi~~~------~~~lv~ttD~~~~~~~f~~~~~p~~~G~~ava~~lsDlaa~Ga~P~~~-~~~~~~p~~~ 96 (311)
T 2yxz_A 24 APLPPGDDAGGVWAE------GRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPLGF-TLGLFLPEDL 96 (311)
T ss_dssp CSSCTTSSSEEEEET------TEEEEEEEEEEEHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEEEECTTC
T ss_pred cccCCCCCEEEEecC------CCeEEEEeCcCCCccccCCCCCHHHHHHHHHHHHHHHHHHcCChhhhh-eeeEeCCCCC
Confidence 446899999999984 4789999999754 246999999999999999999999999987 5778999766
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC-CCChHHHHHH
Q psy12424 82 TEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK-PLGTQMSVTI 160 (324)
Q Consensus 82 ~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg-~~G~~~~~~~ 160 (324)
+. ++++++++||+++|+++|++++||||+.++.+++++| |.+++.+.++ ++++|||.|+++| ++|.+.. +
T Consensus 97 ~~----~~l~~~~~Gi~~~~~~~g~~lvGG~t~~~~~~~i~~t--G~v~~~~~~~-~~a~~GD~i~~~g~~~G~~~~--~ 167 (311)
T 2yxz_A 97 EE----GFVLELVRGAAEAAKRLGAFLLGGDTNRGVEVALTVS--GYALAEAPLP-RKALPGDLLYLAGDRWGRTGA--A 167 (311)
T ss_dssp BH----HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCEEEEE--EEEEESSCCC-SCCCTTCEEEEESSCTTHHHH--H
T ss_pred CH----HHHHHHHHHHHHHHHHcCCeEEceecCCCCCcEEEEE--eeeCCCCccc-cCCCCCCEEEEeCCCcchHHH--H
Confidence 54 7999999999999999999999999999888777776 9998777788 8899999999999 9997654 3
Q ss_pred HHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEe
Q psy12424 161 RSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMI 240 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~ 240 (324)
+.+++.. . ... ..+.. .+.+.++.....+++++..+++|||+|| ||+.+|+||+. +++|++|+
T Consensus 168 ~~~~~~~--~---~~~-~~~~~--------~~~~~~p~~~~~~~l~~~~v~a~~DiSd-GL~~~l~ema~-s~~g~~i~- 230 (311)
T 2yxz_A 168 IRAHYEG--R---SLE-GFPKI--------REAAFYPLPRLELLALSGLLRGSLDSSD-GLAETLWQLAD-LGVGVEVE- 230 (311)
T ss_dssp HHHHHHT--C---CCT-TCHHH--------HHHHHCCCCCGGGGGGTTTCSEEEEESS-CHHHHHHHHHT-TTCEEEEC-
T ss_pred HHHHhcC--C---Ccc-hhHHH--------HHHHhCchhhHHHHHHhcCCEEEEeChH-HHHHHHHHHHH-cCCcEEEE-
Confidence 3332211 0 000 11111 1112222111013556666899999999 99999999999 99999998
Q ss_pred cCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCCce
Q psy12424 241 HTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSPDI 317 (324)
Q Consensus 241 ~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~~~ 317 (324)
++|+++.+.++|+.++..++..|++|.+|+ ||+++++++++++++.+++ ++++||+|++++ ++.+ +++.
T Consensus 231 -~ip~~~~~~~~~~~~~~~~~~~l~~g~~~~----ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~~~~-~v~i--~g~~ 302 (311)
T 2yxz_A 231 -ALPLYPDVLAFAGSEEAALELVLYGGEEFE----AVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE-GVYL--RGAP 302 (311)
T ss_dssp -CCCCCHHHHHHHSSHHHHHHHHHSCCCCCE----EEEEECSTTHHHHHHHHHHTTCCEEEEEEEESSS-CEEE--TTEE
T ss_pred -eccCCHHHHHHHHccCCHHHHHhhcCCCeE----EEEEECHHHHHHHHHHHHhcCCCeEEEEEEEcCC-ceEE--CCcC
Confidence 899999998888765422333456666665 9999999999999998875 789999999765 4655 6665
Q ss_pred E
Q psy12424 318 F 318 (324)
Q Consensus 318 ~ 318 (324)
+
T Consensus 303 ~ 303 (311)
T 2yxz_A 303 L 303 (311)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=100.00 E-value=9.6e-46 Score=347.76 Aligned_cols=276 Identities=16% Similarity=0.174 Sum_probs=203.1
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
.|+|||||+++++.+ ++++.|+++||++... +++|+++||++|++|+|||+||||+|+++ ++++++|+ ++
T Consensus 44 ~giGddaav~~~~~~--~~~~~lv~~tD~~g~~~~~a~~~~~~~~iG~~aVa~~vsDiaamGA~P~~~-l~~l~~~~-~~ 119 (349)
T 3p4e_A 44 GGLGGFGALCELPTK--YKHPVLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLFF-LDYYATGK-LD 119 (349)
T ss_dssp C------CEECCCTT--CSSEEEEEEEECCTHHHHHHHHTTCCSSHHHHHHHHHHHHHHTTTCEEEEE-EEEEEESS-CC
T ss_pred ccCCCCeEEEEcccc--CCCceEEEEcCCCCcchhHHHhcCCHHHHHHHHHHHHHHHHHHcCCcHHHH-HHhhcCCC-CC
Confidence 589999999998741 1135799999987432 24677999999999999999999999987 58777754 66
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ ++++++++||+++|+++|++|+||||.++|+ ..+++|++|.+++++++++++++|||.|+++|++|.+.
T Consensus 120 ~----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~~~~~~~l~gt~vG~v~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 195 (349)
T 3p4e_A 120 V----DTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHS 195 (349)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCEEEEEEEEECBTTBCTTCEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSSTT
T ss_pred H----HHHHHHHHHHHHHHHHcCCEEEcceeEECCCcccCCcccEEEEEEEEEcCcccccCCCCCCCCEEEEcCCcchhh
Confidence 6 5899999999999999999999999999885 34667899999988899999999999999999998764
Q ss_pred HHHHHHhhhhh-hhhh-hhhcccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCeEeeccCCccccchhHHhhh
Q psy12424 157 SVTIRSWLKNE-EKLS-FLKSIKVDSAMLKQCVNSAITLMATIN----KKAAILMKKYNAHACTDVTGYGLTGHATNLVK 230 (324)
Q Consensus 157 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~ 230 (324)
. ++.+++.. .+.. .+... +....+ .+.+.+++ +.+..++++..+++|||||+|||+++|+||+
T Consensus 196 ~--g~~l~~~~~~~~~~~~~~~-~~~~~l-------~~~ll~p~r~~~~~~~~l~~~~~v~a~~DiTggGL~~~L~e~a- 264 (349)
T 3p4e_A 196 N--GYSLVRKILEVSKADKNER-LAGKTI-------GEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVL- 264 (349)
T ss_dssp S--SHHHHHHHHHHHTCCTTCE-ETTEEH-------HHHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHGGGGC-
T ss_pred h--HHHHHHHHHhhccCCcccc-cchhHH-------HHHHhhhhHHhHHHHHHHHhcCCceEEEeCCcchHHHHHHHHh-
Confidence 3 44332110 0000 00000 111111 12222222 2234566777899999999999999999999
Q ss_pred hCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCC
Q psy12424 231 YQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGD 306 (324)
Q Consensus 231 ~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~ 306 (324)
.+++|++|+.++||+++.+.++++.++.+..+ ++.- +.++++||++||+++++++++.+++ ++++||+|++..
T Consensus 265 ~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~e-~~~~--~~~g~gll~~v~~~~~~~~~~~l~~~g~~a~vIG~V~~~~ 340 (349)
T 3p4e_A 265 PEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHE-MYRT--FNCGVGLIIALPKDQANAAVALLQAEGETAWVIGEIAAAN 340 (349)
T ss_dssp CTTEEEEECTTSCCCCHHHHHHHHHHTCCHHH-HHTT--SCTTEEEEEEECHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred hhCceEEEeccCCCCCHHHHHHHHhcCCCHHH-HHHh--cCCCCcEEEEEcHHHHHHHHHHHHhcCCCeEEEEEEeccC
Confidence 79999999999999999888888766654322 2122 2345679999999999999998876 899999998743
No 12
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=100.00 E-value=4.5e-45 Score=343.47 Aligned_cols=283 Identities=14% Similarity=0.158 Sum_probs=210.2
Q ss_pred CCCCCCeeEEeCCC--CCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCC
Q psy12424 9 IEIGLDSCIIPLAS--GRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQ 80 (324)
Q Consensus 9 ~~~gdDaavi~~~~--~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~ 80 (324)
.++|||||+++++. . .++++.|+++||+.... .+.++++||++|++|+|||+||||+|+++ ++++++| +
T Consensus 40 ~giGddaav~~~~~~~~-~~~~~~lv~stD~~~~k~~~a~~~~~~~~iG~~ava~~vsDiaamGA~P~~~-l~~l~~~-~ 116 (350)
T 3m84_A 40 TGLGSFGSLYSLKNIIN-NYDDPVLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITF-LDYVAHD-K 116 (350)
T ss_dssp CCCGGGCCEEECHHHHH-HCSSEEEEEEEECCTTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCEEEEE-EEEEEES-S
T ss_pred cCCCCceEEEecCcccc-cCCCceEEEEcCcCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHhcCC-C
Confidence 58999999999861 0 00146799999986542 23458999999999999999999999987 6888876 4
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCCh
Q psy12424 81 LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGT 154 (324)
Q Consensus 81 ~~~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~ 154 (324)
+++ ++++++++||+++|+++|++++||||.++|+ +.+++|++|.+++++++++++++|||.|+++|++|.
T Consensus 117 ~~~----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~p~~~~~~~~~l~gt~vG~v~~~~~l~~~~a~~GD~Ii~tg~~G~ 192 (350)
T 3m84_A 117 LDP----AIMEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEGDIVFGLSSSGL 192 (350)
T ss_dssp CCH----HHHHHHHHHHHHHHHHTTCEEEEEEEEECTTTBCTTCEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSS
T ss_pred CCH----HHHHHHHHHHHHHHHHhCCeEEeeeeeEcCCcccCCcccEEEEEEEEEeCCcccccccCCCCCEEEEecCchH
Confidence 666 5899999999999999999999999999985 457778999999888999999999999999999887
Q ss_pred HHHHHHHHhhhhh--hhhh-hhhcccCChHHH-HHHHHHHHHHHHHHH----HHHHHHHH-hccCeEeeccCCccccchh
Q psy12424 155 QMSVTIRSWLKNE--EKLS-FLKSIKVDSAML-KQCVNSAITLMATIN----KKAAILMK-KYNAHACTDVTGYGLTGHA 225 (324)
Q Consensus 155 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~-~~~v~a~~DiS~GGL~~~L 225 (324)
+.. ++++++.. ++.. .+... +++ + .+.+ .+.+.+++ +....+++ +..+|+|||||+|||+++|
T Consensus 193 ~~~--g~~l~r~~~~~~~~~~~~~~-~~~--~~~~~l---~~~ll~p~r~~~~~~~~l~~~~~~v~a~~DiTggGL~~~L 264 (350)
T 3m84_A 193 HTN--GYSFARKLFFDVAGNKHTDT-YPE--LEGKTI---GDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIENI 264 (350)
T ss_dssp TTS--SHHHHHHHHHTTSCCCTTCC-CGG--GTTCCH---HHHHTCCCCCCHHHHHHHHHTTCCCCEEEECCTTHHHHHH
T ss_pred HHH--HHHHHHHHhhhhhcCCcccc-ccc--cchhHH---HHHHhhhhhhhHHHHHHHHhccCCeeEEEeCCCccHHHHH
Confidence 542 43332110 0100 00000 110 0 0001 12222222 22234555 6679999999999999999
Q ss_pred HHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc----ccceEEE
Q psy12424 226 TNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG----LAWIIGK 301 (324)
Q Consensus 226 ~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~----~~~~IG~ 301 (324)
+||+ +|++|++|+.++||+++.+.++++.++.+..+.+ . .+.++++||++|||++++++++.+++ ++++||+
T Consensus 265 ~ei~-~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~~e~~-~--~~~~g~gll~~v~~~~~~~~~~~l~~~g~~~a~~IG~ 340 (350)
T 3m84_A 265 PRVL-PQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMY-R--SFNMGIGMTIIASQDQFDKMQELAKKHTNTKLYQIGK 340 (350)
T ss_dssp HHHS-CTTCEEEECGGGSCCCHHHHHHHHHHTCCHHHHH-H--HCCTTEEEEEEECGGGHHHHHHHHTTCTTSCEEEEEE
T ss_pred HHHh-hhCceEEEEcccCCCcHHHHHHHHhcCCCHHHHH-H--HHhCCCCEEEEECHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9999 8999999999999999999999887665432111 1 12235579999999999999999875 5799999
Q ss_pred EecCCCcEEE
Q psy12424 302 VTPGDRSVII 311 (324)
Q Consensus 302 V~~~~~~~~l 311 (324)
|++++ ++++
T Consensus 341 V~~~~-~v~~ 349 (350)
T 3m84_A 341 ITNSG-KVEI 349 (350)
T ss_dssp EESSS-SEEE
T ss_pred EEeCC-cEEE
Confidence 99864 4654
No 13
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=100.00 E-value=2.3e-44 Score=337.80 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=200.6
Q ss_pred CCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCccCChh-----hHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 8 RIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPH-----IMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 8 ~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~~~p~-----~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
.+++||||||+++++ ..|++|||++ +.+|+ ++||+||++|+|||+||||+|+++ ++++++|..++
T Consensus 37 ~~~~gdDaav~~~~~------~~lv~ttD~~---~~~~~~~~~~~iG~~ava~~lsDl~a~Ga~P~~~-~~~l~~p~~~~ 106 (338)
T 2z1e_A 37 GLDALDDGATIPFGD------KHIVFTIDGH---TVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIAL-ANSMIIGEGLD 106 (338)
T ss_dssp ----CCSCEEEEETT------EEEEEEEEEE---CCSSSEETTEEHHHHHHHHHHHHHHTTTCEEEEE-EEEEEEETTCC
T ss_pred CcCCCCceEEEEeCC------CEEEEEeCCC---ccCccccCCccHHHHHHHHHHHHHHHcCCchhHh-EEEEecCCCCC
Confidence 358899999999874 5899999975 34554 469999999999999999999986 68899987666
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC---CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP---WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVT 159 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~---~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~~ 159 (324)
. ++++++++|++++|+++|++++||||..++ .+.+++|++|.+++. . ++++++|||.|+++|++|.+..
T Consensus 107 ~----~~l~~~~~Gi~~~~~~~g~~lvGGdt~~~~~~~~~~i~~t~~G~v~~~-~-~~~~a~~GD~i~vtg~~G~~g~-- 178 (338)
T 2z1e_A 107 M----EVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGIGIAEHP-V-SDAGAKVGDAVLVSGTIGDHGI-- 178 (338)
T ss_dssp H----HHHHHHHHHHHHHHHHTTCCEEEEEEEEESSSCCEEEEEEEEEEESSC-C-CTTCCCTTCEEEESSCSSHHHH--
T ss_pred H----HHHHHHHHHHHHHHHHcCCEEECcEEEEcCCCCceEEEEEEEEEECCc-c-CccCCCCCCEEEEECCccHHHH--
Confidence 5 699999999999999999999999999876 568888999999876 3 8899999999999999997643
Q ss_pred HHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH-h-c-cCeEeeccCCccccchhHHhhhhCCCeE
Q psy12424 160 IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMK-K-Y-NAHACTDVTGYGLTGHATNLVKYQTNSV 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~a~~DiS~GGL~~~L~~la~~s~~g~ 236 (324)
++...+.. .. .... +... . ..+++....+++ . . .+++|||+|+|||+.+|+||++++++|+
T Consensus 179 ~~~~~~~~--~~-~~~~-~~~~-~-----------~~~~~~~~~l~~~~~~~~v~a~~Dis~GGL~~~l~ema~~s~~g~ 242 (338)
T 2z1e_A 179 ALMSHREG--IA-FETE-LKSD-V-----------APIWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGI 242 (338)
T ss_dssp HHHHHHTT--CC-CSSC-CCCC-C-----------CCCHHHHHHHHHHHCGGGEEEEECCCTTHHHHHHHHHHHHHTCEE
T ss_pred HHHhhhcc--CC-CChh-HHHh-h-----------hhHHHHHHHHHHhcccCceEEEEeCCCChHHHHHHHHHHhcCCeE
Confidence 33322111 00 0000 0000 0 000111112233 3 3 5999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc-----ccceEEEEecCC-CcEE
Q psy12424 237 NFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG-----LAWIIGKVTPGD-RSVI 310 (324)
Q Consensus 237 ~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~-----~~~~IG~V~~~~-~~~~ 310 (324)
+|+++++|+++.+.++++.++.+ +++.+++|+||+++++++++++++.+++ ++++||+|++++ +.+.
T Consensus 243 ~I~~~~iP~~~~~~~~~~~~~~~-------~l~~~~~G~ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~~~~v~ 315 (338)
T 2z1e_A 243 LVREADIPIRPEVRAASEMLGIS-------PYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVL 315 (338)
T ss_dssp EEEGGGSCCCHHHHHHHHHHTCC-------GGGSCCSSCCEEEECGGGHHHHHHHHHTSSTTTTCEEEEEEESSSTTCEE
T ss_pred EEEcccCCCCHHHHHHHHHcCCC-------hhhccCCceEEEEECHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCeEE
Confidence 99999999999998888765432 2334567789999999999999998864 689999999765 3466
Q ss_pred Ee
Q psy12424 311 IK 312 (324)
Q Consensus 311 l~ 312 (324)
+.
T Consensus 316 i~ 317 (338)
T 2z1e_A 316 LE 317 (338)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 14
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.3e-44 Score=338.93 Aligned_cols=281 Identities=16% Similarity=0.182 Sum_probs=202.8
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCC------ccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP------LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~------~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
+++|||||+++++.. .++++.|++|||++.. .+++|+++||++|++|+|||+||||+|+++ ++++++| +.+
T Consensus 38 ~g~GdD~av~~~~~~-~~~~~~lv~stD~~~~~~~~~~~~~~~~~iG~~ava~~vsDlaa~Ga~P~~~-~~~l~~~-~~~ 114 (348)
T 2z01_A 38 GGIGGFGGLFDLSAL-GYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFF-LDYIACG-KAV 114 (348)
T ss_dssp CC-----CEECGGGG-CCSSEEEEEEEEECCTHHHHHHHHTCCSSHHHHHHHHHHHHHHTTTCEEEEE-EEEEEES-SCC
T ss_pred eccCCccEEEecCcc-cCCCcceeeecccccchHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCChHHH-HHHhcCC-CCC
Confidence 589999999997520 0113569999998643 235899999999999999999999999987 5888987 456
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ ++++++++||+++|+++|++|+||||+.+|+ ..+++|++|.+++++.+++++++|||.|++++++|.+.
T Consensus 115 ~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~l~~~~a~~GD~ii~~g~~G~~~ 190 (348)
T 2z01_A 115 P----EKIAAIVKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPSSGLHS 190 (348)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCEEEECCEEC--------CEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSSTT
T ss_pred H----HHHHHHHHHHHHHHHHcCCEEECceeeecCCcccCCCeeEEEEEEEEEccccccCccCCCCCCEEEEECCchHHH
Confidence 6 5899999999999999999999999998763 56788899999988889999999999999999988653
Q ss_pred HHHHHHhhhhh-hh-hh-hhhcccC-C-hHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCeEeeccCCccccchhHH
Q psy12424 157 SVTIRSWLKNE-EK-LS-FLKSIKV-D-SAMLKQCVNSAITLMATINK----KAAILMKKYNAHACTDVTGYGLTGHATN 227 (324)
Q Consensus 157 ~~~~~~~~~~~-~~-~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~GGL~~~L~~ 227 (324)
. ++.+++.. .+ .. ..... + + ...+ .+.+.++++ ....++++..+++|||||||||+.+|+|
T Consensus 191 ~--g~~l~~~~~~~~~~~~~~~~-~~~~~~~l-------~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~e 260 (348)
T 2z01_A 191 N--GYSLVRRIVFEQAKLSLDEI-YEPLDVPL-------GEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENIPR 260 (348)
T ss_dssp S--CHHHHHHHHHTTSCCCTTSC-CTTCSSCH-------HHHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHHHH
T ss_pred h--HHHHHHHHHhhhccCCcccc-cccccchH-------HHHHhhHHHHHHHHHHHHHhcCCceEEEeCCCCcHHHHHHH
Confidence 2 44332211 00 00 00000 1 0 0011 122222221 1123456667999999999999999999
Q ss_pred hhhhCCCeEEEEecCCCCChhHHHHhcccCCcccc--cccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEE
Q psy12424 228 LVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQ--NVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKV 302 (324)
Q Consensus 228 la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~--~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V 302 (324)
|+ .+++|++|+++++|+++.+.++++.++.+..+ .++ ..+.+||+++++++++++++.+++ ++++||+|
T Consensus 261 m~-~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~-----~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~IG~V 334 (348)
T 2z01_A 261 ML-PPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVF-----NMGIGLVLAVSPETAAPLVEWLSERGEPAYIIGEV 334 (348)
T ss_dssp HS-CTTEEEEEETTSSCCCHHHHHHHHHTTCCHHHHHHHS-----CTTEEEEEEECHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Hh-ccCceEEEeccCCCCCHHHHHHHHcCCCCHHHHHHHh-----CCCCeEEEEEcHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99 69999999999999999888888766554221 011 123369999999999999998875 78999999
Q ss_pred ecCCCcEEEec
Q psy12424 303 TPGDRSVIIKD 313 (324)
Q Consensus 303 ~~~~~~~~l~~ 313 (324)
++++ ++.+..
T Consensus 335 ~~~~-~v~~~g 344 (348)
T 2z01_A 335 AKGA-GVSFAG 344 (348)
T ss_dssp EESS-EEEEEC
T ss_pred ecCC-eEEEcC
Confidence 9875 566543
No 15
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=100.00 E-value=9.6e-44 Score=334.48 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=207.4
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCCc------cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPL------VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~------~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
.++|||||+++++. ..++++.|+++||++... +++|+++||++|++|+|||+||||+|+++ ++++++| +++
T Consensus 36 ~giGdd~a~~~~~~-~~~~~~~lv~~tD~~~~~~~~~~~~~~~~~iG~~ava~~vsDi~a~Ga~P~~~-l~~l~~~-~~~ 112 (346)
T 2btu_A 36 GGLGGFGGMFDLSK-FALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFF-LDYIACG-KAE 112 (346)
T ss_dssp CC---CCCEEECTT-CCCSSEEEEEEEEECCTTHHHHHHHCCCSSHHHHHHHHHHHHHHTTTCEEEEE-EEEEEES-SCC
T ss_pred ccccceEEEEecCc-cCCCCceEEEecccCCchHHHHHHhcCcchHHHHHHHHHHHHHHHcCCChHHH-HHHHhcC-CCC
Confidence 58999999999863 012246799999987442 35799999999999999999999999987 5888987 456
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQM 156 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~ 156 (324)
+ ++++++++|++++|+++|++++||||+++|+ ..+++|++|.+++++.+++++++|||.|+++|++|.+.
T Consensus 113 ~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~ii~~g~~G~~~ 188 (346)
T 2btu_A 113 P----SKIENIVKGISEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLASSGIHS 188 (346)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCEEEEEEEEECSTTSCSSCEEEEEEEEEEEETTSCCCSTTCCTTCEEEEEECSSSTT
T ss_pred H----HHHHHHHHHHHHHHHHhCCeEeeeEEEEcCCcccCCCccEEEEEEEEEccccccCccCCCCCCEEEEECCchhhh
Confidence 5 5899999999999999999999999998874 46788899999988899999999999999999988653
Q ss_pred HHHHHHhhhhh-hhhh--hhhcccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCeEeeccCCccccchhHHhh
Q psy12424 157 SVTIRSWLKNE-EKLS--FLKSIKVDSAMLKQCVNSAITLMATINK----KAAILMKKYNAHACTDVTGYGLTGHATNLV 229 (324)
Q Consensus 157 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~a~~DiS~GGL~~~L~~la 229 (324)
. ++.+++.. .+.. ..... +.. . .....+.+.++++ ....++++..+++|||||||||+.+|+||+
T Consensus 189 ~--g~~l~~~~~~~~g~~~~~~~-~~~--~---~~~l~~~~l~p~~~~~~~~~~ll~~~~v~a~~DiS~GGL~~~L~ema 260 (346)
T 2btu_A 189 N--GYSLVRKVLLEDGELSLDRI-YGR--L---ELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRML 260 (346)
T ss_dssp S--CHHHHHHHHHSSCCC----C-CSS--S---CSCHHHHHTCCCCCCHHHHHHHHHHSCCCCCEECCTTHHHHHTGGGC
T ss_pred h--HHHHHHHHHhhccccccCcc-chh--h---hhHHHHHHhhHHHHHHHHHHHHHHhCCceEEEeCCCChHHHHHHHHH
Confidence 2 44332210 0000 00000 100 0 0001222222222 112455666799999999999999999999
Q ss_pred hhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCC
Q psy12424 230 KYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGD 306 (324)
Q Consensus 230 ~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~ 306 (324)
++++|++|+++++|+++.+.++++.++.+..+ ++.- +..+.++|++|++++++++++.+++ ++++||+|++++
T Consensus 261 -~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~-~~~~--~~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~IG~V~~~~ 336 (346)
T 2btu_A 261 -PEGIGAEIELGSWKIQPIFSLLQEVGKLEEKE-MFNI--FNMGIGMVVAVKEEDAKDIVRLLEEQGETARIIGRTVQGA 336 (346)
T ss_dssp -CTTEEEEECTTSSCCCHHHHHHHHHHTCCHHH-HTTT--CCTTEEEEEEECTTTHHHHHHHHHHHTCCEEEEEEEEESS
T ss_pred -hCCeeEEEeecCCCCCHHHHHHHHhcCCCHHH-HHHH--hCCcCcEEEEEcHHHHHHHHHHHHhCCCCeEEEEEEecCC
Confidence 89999999999999999988888766554321 1111 1123569999999999999998875 789999999865
Q ss_pred CcEEE
Q psy12424 307 RSVII 311 (324)
Q Consensus 307 ~~~~l 311 (324)
++.+
T Consensus 337 -~v~~ 340 (346)
T 2btu_A 337 -GVTF 340 (346)
T ss_dssp -SEEE
T ss_pred -eEEE
Confidence 5554
No 16
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=319.09 Aligned_cols=286 Identities=15% Similarity=0.176 Sum_probs=201.8
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCCCC------ccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCC
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFFYP------LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLT 82 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~------~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~ 82 (324)
+..|-.+++++++.. .+.+..|+.++|+... .++.|+++||+||++|+|||+||||+|+++ ++++++|+ .+
T Consensus 8 ~~~g~f~~~~~~~~~-~~~~~~l~~~~D~~v~~~~~a~~~d~~~~iG~~ava~~vsDiaamGA~P~~~-l~~l~~~~-~~ 84 (334)
T 2v9y_A 8 VDLGGFAGLFDLKAA-GFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFF-LDYFSCGK-LD 84 (334)
T ss_dssp -------CCCCTTTT-TCSSEEEEEEEECCTTHHHHHHHHTCCTTHHHHHHHHHHHHHHTTTCEEEEE-EEEEEESS-CC
T ss_pred ccCcccceeeecccc-cCCCceEEeecCcCCcchhhheecCCHHHHHHHHHHHHHHHHHHCCCcHHHH-HHHhcCCC-CC
Confidence 455666777776520 1225689999998643 134589999999999999999999999987 57888754 66
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhCCeeeCccccccC------CceEeEEEEEeeeCCcccCC-CCCCCCCEEEEeCCCChH
Q psy12424 83 EDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNP------WMTIGGVVTSVCSSEEFVMP-NQAQPGDVIILTKPLGTQ 155 (324)
Q Consensus 83 ~~~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~------~~~i~~t~iG~~~~~~~~~~-~~a~~GD~Ii~tg~~G~~ 155 (324)
+ ++++++++||+++|+++|++++||||+++| +..+++|++|.+++++++++ ++++|||.|+++|++|.+
T Consensus 85 ~----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~~a~~GD~Ii~~g~~G~~ 160 (334)
T 2v9y_A 85 L----SVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLH 160 (334)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCSCCGGGCCTTCEEEEEECSSST
T ss_pred H----HHHHHHHHHHHHHHHHhCCeEEeEEeEEcCCcccCCceeEEEEEEEEEccccccccccCCCCCCEEEEECCccHH
Confidence 6 589999999999999999999999999887 24578889999998888999 999999999999998876
Q ss_pred HHHHHHHhhhhh-hhhh-hhhcccCCh----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccCeEeeccCCccccchhHHh
Q psy12424 156 MSVTIRSWLKNE-EKLS-FLKSIKVDS----AMLKQCVNSAITLMA-TINKKAAILMKKYNAHACTDVTGYGLTGHATNL 228 (324)
Q Consensus 156 ~~~~~~~~~~~~-~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~l 228 (324)
.. ++.+++.. .+.. ..... ++. ..+ .+.+..+. +..+....++++..+++|||||+|||+++|+||
T Consensus 161 ~~--g~~~~~~~~~~~~~~~~~~-~~~d~~~~~l----~~~~~~p~~~~~~~~~~l~~~~~v~a~~DiS~GGL~~~L~em 233 (334)
T 2v9y_A 161 SN--GFSLVRKIVAKSSLQYSSP-APDGCGDQTL----GDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENIPRV 233 (334)
T ss_dssp TS--SHHHHHHHHHHSSCCTTSB-CCTTSCSSBH----HHHHTCCCCCCHHHHHHHHHTTCCCEEEECCTTHHHHHSGGG
T ss_pred HH--HHHHHHhHhhhccCccccc-cccccchhHH----HHHHhhhhHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH
Confidence 43 44333210 0000 00000 111 011 11111111 112222345555569999999999999999999
Q ss_pred hhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecC
Q psy12424 229 VKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPG 305 (324)
Q Consensus 229 a~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~ 305 (324)
+ ++++|++|+++++|+++.+.++++.++.+..+.. .- +.++++||+++||++++++++.+++ ++++||+|+++
T Consensus 234 a-~s~vg~~I~~~~iP~~~~~~~~~~~~~~~~~~~~-~~--~~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~IG~V~~~ 309 (334)
T 2v9y_A 234 L-PEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMA-RT--FNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVAR 309 (334)
T ss_dssp S-CTTEEEEEEGGGSCCCHHHHHHHHHHTCCHHHHH-HH--CCTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred h-hcCeEEEEecccCCCcHHHHHHHHhcCCCHHHHH-HH--hCCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEecc
Confidence 9 8999999999999999999988887655422110 00 1223459999999999999998875 78999999875
Q ss_pred C---CcEEEe
Q psy12424 306 D---RSVIIK 312 (324)
Q Consensus 306 ~---~~~~l~ 312 (324)
. +++.+.
T Consensus 310 ~~~~~~V~~~ 319 (334)
T 2v9y_A 310 AEGSPRVKVK 319 (334)
T ss_dssp ----CCEEEE
T ss_pred CCCCCeEEEe
Confidence 3 456654
No 17
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=2.2e-37 Score=316.54 Aligned_cols=280 Identities=11% Similarity=0.074 Sum_probs=199.3
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
+++||||||+++++ +..+++++|+ |+|...+||.+|++++++|+|||+||||+|+++ ++++++|+...+ +..
T Consensus 63 ~g~gdDaavi~~~~-----~~~l~~~ve~h~~p~~~~P~~gg~~~v~~~l~Di~amGA~P~~~-l~~l~~~~~~~~-~~~ 135 (725)
T 3ac6_A 63 QGPGENAGVVRVGE-----GWAVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSMGARPIAL-LDSLRFGPPEEA-RSR 135 (725)
T ss_dssp ECTTSSSEEEEEET-----TEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEESCTTSH-HHH
T ss_pred EecCCceEEEEeCC-----CeEEEEEeCcCCCCcccChHHHHHHHHhhhhhhhhccCChhHhh-eeeEEcCCCCCc-cHH
Confidence 58999999999876 5689999995 344557999999999999999999999999987 688999875443 235
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccC----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC----CCChHHHHH
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNP----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK----PLGTQMSVT 159 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg----~~G~~~~~~ 159 (324)
++++++++|++++|+++|++++||||.+++ .+++.++++|.++++++ .++++++||.|+++| ..|.+..
T Consensus 136 ~~l~~~~~Gi~~~~~~~G~~lvgG~t~~~~~~~~~~~i~~~~vG~v~~~~~-~~~~a~~GD~ii~~G~~~g~~G~gg~-- 212 (725)
T 3ac6_A 136 YLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRENPLVNAMCLGLLREEHL-KRSRASLGRPIYYAGAKTGRDGIGGA-- 212 (725)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEECGGGSSSCEEEEEEEEEEEGGGC-CCBCCCTTCEEEEEESCBCSCCC-----
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEEEEEeCCcCCCceEEEEEEEEeChhhc-ccCCCCCCCEEEEECCCCCCCcchHH--
Confidence 789999999999999999999999999875 46889999999987654 478899999999987 5565543
Q ss_pred HHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEE
Q psy12424 160 IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~ 239 (324)
++..-...... . ...+.++.. ....+ .++.+...++++...+++|||+|+|||+.+|.||+..+++|++|+
T Consensus 213 ~~~~~~~~~~~---~---~~~p~v~~g-~~~~e--~~~~~~~~~l~~~~~i~a~~Di~~gGL~~~l~ema~~sg~g~~i~ 283 (725)
T 3ac6_A 213 AFASRELKEEK---A---EDRPAVQVG-DPFLG--KLLMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVELH 283 (725)
T ss_dssp -------------------------CC-CHHHH--HHHHHHHHHHHHTTCEEEEEECCTTHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhcccc---c---cCCcccccC-CHHHH--HHHHHHHHHHHhcCCeeEEEeCCCChHHHHHHHHHHhcCCeEEEE
Confidence 22110000000 0 000001000 00000 011222234455556999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCCc
Q psy12424 240 IHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSPD 316 (324)
Q Consensus 240 ~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~~ 316 (324)
++++|+++..... ++. ++ .|+.++|+++++|++++++++.+++ ++++||+|++++ ++.+..+++
T Consensus 284 l~~vP~~~~~~~~-------~e~-~~----se~q~~ll~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~~~-~~~~~~~g~ 350 (725)
T 3ac6_A 284 LDLVPTREEGMTP-------EEL-LL----SESQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIPER-VFRVLFRGE 350 (725)
T ss_dssp GGGSCBSSSSCCH-------HHH-HH----CCCSSEEEEEECTTCHHHHHHHHHHTTCCEEEEEEEESSS-EEEEEETTE
T ss_pred eccCCCCcCCCCH-------HHH-Hh----cCCcCcEEEEEChHHHHHHHHHHHHcCCCEEEEEEEEeCC-eEEEEECCc
Confidence 9999987641100 110 11 2344689999999999999988875 789999999765 455555555
Q ss_pred e-Eee
Q psy12424 317 I-FHV 320 (324)
Q Consensus 317 ~-~~~ 320 (324)
. +++
T Consensus 351 ~~~d~ 355 (725)
T 3ac6_A 351 VVAEV 355 (725)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 4 444
No 18
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=100.00 E-value=2.9e-37 Score=309.55 Aligned_cols=268 Identities=12% Similarity=0.138 Sum_probs=194.6
Q ss_pred CCCCCCeeEEeCCCCCCCCCceEEEeecCC-CCccCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHh
Q psy12424 9 IEIGLDSCIIPLASGRSPSPLYLIQSTDFF-YPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERD 87 (324)
Q Consensus 9 ~~~gdDaavi~~~~~~~~~~~~lv~t~D~~-~~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~ 87 (324)
.++||||||+++++ +..+++++|+. .|...+||.+|++++++|+|||+||||+|+++ ++++++|
T Consensus 60 ~g~gdDAavi~~~~-----~~~l~~t~e~h~~p~~~~P~~gg~~av~~~lrDi~a~GA~P~a~-l~~l~~g--------- 124 (615)
T 1vk3_A 60 TGFEGNAGVVNLDD-----YYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAI-FDSLHMS--------- 124 (615)
T ss_dssp CTTSSSTTEEESSS-----SEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEEES---------
T ss_pred CCCCCceEEEEeCC-----CeEEEEEecccCCccccChhHHHHHHHHHHhccccccCceehhh-hhhhhHH---------
Confidence 46789999999986 57899999953 44457999999999999999999999999986 6888997
Q ss_pred hHHHHHHHHHHHHHHHhCCeeeCccccccC----CceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCC----CChHHHHH
Q psy12424 88 IIVPMLIEGFKAQASVAGVNISKVAVKLNP----WMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKP----LGTQMSVT 159 (324)
Q Consensus 88 ~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~----~G~~~~~~ 159 (324)
++++++++|++++|+++|++++||||.+.+ .+++.++++|.++++++++++.+++||.|+++|. .|.+....
T Consensus 125 ~~l~~~~~Gi~~~~~~~GvplvGG~t~~~~~y~~~p~~~~~~vG~v~~~~~~~~~~~~~GD~Iil~G~~tg~~G~~g~~~ 204 (615)
T 1vk3_A 125 RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF 204 (615)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEEEEECGGGTTCCEEEEEEEEEEETTSCCCSSCCSTTCEEEEEESCBCSCC------
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEEEEEecCCCCCceEEEEEEEEEcHHHccCccCCCCcCEEEEECCCCCCCcccHHHH
Confidence 268899999999999999999999997654 3788999999999888889999999999999765 44443211
Q ss_pred HHHhhhhhh-hhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEE
Q psy12424 160 IRSWLKNEE-KLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNF 238 (324)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i 238 (324)
....+.... ...... ....+.++ .+.+...+++++..+++|||+|+|||+.+|.||+..+++|++|
T Consensus 205 ~~~~~~~~~~~~~~v~---~~~~~~e~----------~~~~~~~~l~~~~~i~a~~Dis~gGL~~~l~ema~~sg~G~~I 271 (615)
T 1vk3_A 205 ASEDLTGDKATKLSIQ---VGDPFAEK----------MLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIV 271 (615)
T ss_dssp ----------CGGGCC---CCCHHHHH----------HHHHHHHHHHHHTCCSEEEECCTTHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhcccccccccC---cCCHHHHH----------HHHHHHHHHHhcCCeeEEEeCCCccHHHHHHHHHHhCCceEEE
Confidence 111110000 000000 11111111 0111213344555699999999999999999999999999999
Q ss_pred EecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecCC
Q psy12424 239 MIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDSP 315 (324)
Q Consensus 239 ~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~~ 315 (324)
+++++|+.+.... .++. + ..|+.+++++++++++++++++.+++ ++++||+|++++ .+.+..++
T Consensus 272 dl~~vP~~~~~~~-------~~e~-l----~sesq~r~l~~v~~~~~~~~~~~~~~~g~~~~vIG~Vt~~~-~l~v~~~g 338 (615)
T 1vk3_A 272 HLDRVPLREPDME-------PWEI-L----ISESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIEEP-VYRVMYRN 338 (615)
T ss_dssp EGGGSCBSSTTCC-------HHHH-H----HCCCSSEEEEEECGGGHHHHHHHHHHTTCEEEEEEEEESSC-EEEEEETT
T ss_pred EecccCCCCCCCC-------HHHH-H----HcCCCCeEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEEeCC-eEEEEECC
Confidence 9999998764110 0110 1 13455689999999999999988875 789999999764 45555555
Q ss_pred ce
Q psy12424 316 DI 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 339 ~~ 340 (615)
T 1vk3_A 339 DL 340 (615)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 19
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=3.2e-36 Score=307.93 Aligned_cols=269 Identities=14% Similarity=0.080 Sum_probs=199.2
Q ss_pred CCCCCC-CCeeEEeCCCCCCCCCceEEEeecCCCCc-cCChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChh
Q psy12424 7 VRIEIG-LDSCIIPLASGRSPSPLYLIQSTDFFYPL-VTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTED 84 (324)
Q Consensus 7 ~~~~~g-dDaavi~~~~~~~~~~~~lv~t~D~~~~~-~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~ 84 (324)
..+.+| +||||+++++. +..+++|+|+++++ ..|||.+||.||++|+|||+||||+|+++ +++++||+..++
T Consensus 422 tv~~pg~~DaaVi~~~~~----~~~la~s~d~~~~~~~~dP~~~g~~AVaeav~di~a~Ga~Pl~~-~~~l~~g~~~~~- 495 (725)
T 3ac6_A 422 TALLPGKGDAAVLWIKGT----RLGVAAKVDQNPRYSRLHPRLGAMHALAEACRNVSVVGAKPLAY-TDGLNLGSPETP- 495 (725)
T ss_dssp EEECCSCCSSEEEEETTS----SEEEEEEEECCHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEECSCSSSH-
T ss_pred eeecCCCCceEEEEeCCC----CeEEEEEEcCCCCeeeeCHHHHHHHHHHHHHHHHHHcCCcceEE-EEEEEcCCCCCh-
Confidence 345789 99999998752 46899999998877 57999999999999999999999999986 688999765444
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHH
Q psy12424 85 ERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMS 157 (324)
Q Consensus 85 ~~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~ 157 (324)
+.++++.++++|++++|+++|++++||||+.+++ +++.++++|.++..+.+++..+++||.|+++|+.|.+..
T Consensus 496 ~~~~~l~~~v~Gi~~a~~~~gv~ivgG~ts~~~~~~~~~i~ptl~i~~vG~v~~~~~i~~~~~~~GD~lil~g~~g~~~g 575 (725)
T 3ac6_A 496 EGYHELAETIAGLKEASEALGVPVVSGNVSLYNESGGKRIPPTAMVGVVGVLEVDKRAEMGFRRPGEVLLLIGEERGELG 575 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEEEGGGCCBSSCCSTTCEEEEESCSCCBCT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeeeeeeeecCCCCCCccCCceEEEEEEEechhhccChhhCCCCCEEEEEcCCCCCcc
Confidence 4678999999999999999999999999998763 578889999998767888999999999999998753311
Q ss_pred HHHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 158 VTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
...+... .+...... .+...++. .+. .......++++..|+||||+|+|||+.+|.||+..+++|++
T Consensus 576 gs~l~~~----~~~~~~~~-~p~~d~~~-----~~~---~~~~v~~l~~~~~v~a~~Dis~GGL~~~L~ema~~~~~G~~ 642 (725)
T 3ac6_A 576 ASEVLYL----LTGKEFGH-PPRLDLGR-----EKA---VQEAIRDLIQRGLTRTAHDVAEGGLLLALAEMTFPYGVGAT 642 (725)
T ss_dssp TCHHHHH----HHSCCCSC-CCCCCHHH-----HHH---HHHHHHHHHHTTSCSBEEECCTTHHHHHHHHTTTTTCCCEE
T ss_pred HHHHHHH----HhcccCCC-CCCCCHHH-----HHH---HHHHHHHHHhcCCEEEEEeCCCCcHHHHHHHHHhcCCCcEE
Confidence 0011110 00000000 11111110 111 11111345555569999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecC
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDS 314 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~ 314 (324)
|+++. +. ... || .++.|++|++|++++++++++.+++ ++++||+|++ +.+.+..+
T Consensus 643 i~~~~-~~---~~~------------Lf----~e~~G~~vv~v~~~~~~~~~~~l~~~g~~~~~IG~v~~--~~~~i~~~ 700 (725)
T 3ac6_A 643 VEVRE-EG---LEA------------LF----GEAPSRVLFTVEKTRLQEATLLLEERGLPYRVLGETGG--KSLTVLTP 700 (725)
T ss_dssp EECSC-CS---HHH------------HT----CBCSSCEEEEECGGGHHHHHHHHHHTTCCEEEEEEECS--SEEEEEET
T ss_pred EEeCc-ch---HHH------------hh----CCCCCeEEEEEcHHHHHHHHHHHHhCCCCeEEEEEEeC--CEEEEeeC
Confidence 99753 11 110 21 3467889999999999999988875 7899999974 35766555
Q ss_pred Cc
Q psy12424 315 PD 316 (324)
Q Consensus 315 ~~ 316 (324)
++
T Consensus 701 ~~ 702 (725)
T 3ac6_A 701 GG 702 (725)
T ss_dssp TE
T ss_pred Ce
Confidence 54
No 20
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=100.00 E-value=3.6e-34 Score=267.80 Aligned_cols=284 Identities=17% Similarity=0.133 Sum_probs=193.7
Q ss_pred CCCCeeEEeC-CCCCCCCCceEEEeecCCCCcc-------------CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhh
Q psy12424 11 IGLDSCIIPL-ASGRSPSPLYLIQSTDFFYPLV-------------THPHIMGAIACANVLSDIYAVGVTDIDALQMIVG 76 (324)
Q Consensus 11 ~gdDaavi~~-~~~~~~~~~~lv~t~D~~~~~~-------------~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~ 76 (324)
++..|.+++- -. .++++.||.+||+..... .....+||++|++|+|||+||||+|+++ +++ +
T Consensus 32 ~~~~~~~~~~~~~--~~~~pvLv~~tDGVGTKl~lA~~~~k~~g~~~~~~tIG~daVamnVNDIaamGA~Pl~~-L~~-a 107 (389)
T 3mdo_A 32 PKAFCKIIPDILG--GDPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNIL-VSS-T 107 (389)
T ss_dssp TTSSSCCEECTTT--CCTTEEEEEEEEECTTHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTTCCSSEE-EEE-E
T ss_pred CCcceeecchhhc--CCCCceEEEecCCCcHHHHHHHHhhhhccccchHHHHHhHheEeeHHHHHhCcCChHHH-HHh-h
Confidence 4678888861 10 012678999999876531 1245699999999999999999999976 565 6
Q ss_pred cCC---CCChhHHhhHHHHHHHHHHHHH---HHhC--CeeeCccccccCCc----eEeEEEEEeeeCCcccCCCCCCCCC
Q psy12424 77 IST---QLTEDERDIIVPMLIEGFKAQA---SVAG--VNISKVAVKLNPWM----TIGGVVTSVCSSEEFVMPNQAQPGD 144 (324)
Q Consensus 77 ~p~---~~~~~~~~~~~~~i~~Gi~~a~---~~~g--~~ivGGdt~~~~~~----~i~~t~iG~~~~~~~~~~~~a~~GD 144 (324)
+|. ..++ ++++++++|++++| +++| |+++||||.+.|.+ .+++|++|.+++++++++++++|||
T Consensus 108 ~g~l~~~~~~----e~l~~Iv~Gi~e~c~~~~~aGigv~LVGGeTae~p~l~~~~~v~~t~vGiV~~~~ii~~~~ak~GD 183 (389)
T 3mdo_A 108 IGRNKLLVPG----EVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRTIIVDSTVTCRMKRSDVIDNKNIQGGD 183 (389)
T ss_dssp EEECTTTSCH----HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSSEEEEEEEEEEEEGGGCCCGGGCCTTC
T ss_pred cCcCccCCCH----HHHHHHHHHHHHHHHHHHHhCCCcEEeCccceECCCcccCccEEEEEEEEEccccccccccCCCCC
Confidence 643 2344 69999999999999 4896 99999999999864 5788999999999999999999999
Q ss_pred EEEEeCCCCh---------HHHHHHHHhhhhh--hh---------hh-------------hhhcccCChHHHHHHHHHHH
Q psy12424 145 VIILTKPLGT---------QMSVTIRSWLKNE--EK---------LS-------------FLKSIKVDSAMLKQCVNSAI 191 (324)
Q Consensus 145 ~Ii~tg~~G~---------~~~~~~~~~~~~~--~~---------~~-------------~~~~~~~~~~~~~~~~~~~~ 191 (324)
.|+++++.|. +.++|+|++.+.- .+ +. .+... ++. ..+.+.+++
T Consensus 184 ~IIgl~S~G~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~--~~~~lge~L 260 (389)
T 3mdo_A 184 VIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVYSGGLKLTDK-IEE--LGIDAGKMV 260 (389)
T ss_dssp EEEEEESSBCCTTCSSCBCCCCSSSHHHHHHHHBCTHHHHHCGGGSCTTSCTTTTTCSSBCTTCE-ETT--TTEEHHHHH
T ss_pred EEEEECCcccccccccccCCccccHHHHHHHHHHhhhhhhccccccccccccccccccccccccc-ccc--CCCcHHHHH
Confidence 9999998873 1345566543310 00 00 00000 100 000111111
Q ss_pred HHHHHHH-HHHHHHHHhc--cCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCC
Q psy12424 192 TLMATIN-KKAAILMKKY--NAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGH 268 (324)
Q Consensus 192 ~~~~~~~-~~~~~~~~~~--~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~ 268 (324)
-..+++. +....++... .||+|+|||+|||...++++ .+++ .|+.+.||+++....+++..+.++.+ |+.-|
T Consensus 261 L~PTriY~~~v~~ll~~~~~~V~gmaHITGGGl~~~lr~~---~~~~-~i~~~~wpvppiF~~l~~~G~v~~~E-M~rtF 335 (389)
T 3mdo_A 261 LSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQTKVMHFV---ENKR-VTKDNLFPIPPLFRTIQEQSGTDWSE-MYKVF 335 (389)
T ss_dssp HCCCCCCHHHHHHHHHHHGGGCCEEEECCTTGGGGGGGGC---SSEE-EEECSCCCCCHHHHHHHHHHCCCHHH-HHHHS
T ss_pred hhhHHHHHHHHHHHHHHhhhcceEEeeccCcChhhhhhhc---CCcE-EecCCCCCCCHHHHHHHHhcCCCHHH-HHHhc
Confidence 1111111 1112233332 59999999999999887555 3453 78888999977666666665665543 33333
Q ss_pred Cccccc-eEEEEEchhhHHHHHHHHhc---ccceEEEEecCCC-cEEEec
Q psy12424 269 GIETSG-GLFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDR-SVIIKD 313 (324)
Q Consensus 269 ~~es~G-~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~-~~~l~~ 313 (324)
+.| +|+++|++++++++++.+++ ++|+||+|+++++ .+.+..
T Consensus 336 ---NmGiGmVlvV~~e~a~~vl~~l~~~G~~A~iIG~V~~~~~~~V~l~t 382 (389)
T 3mdo_A 336 ---NMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIES 382 (389)
T ss_dssp ---CTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEEECSSCEEEEEE
T ss_pred ---cCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEEeCCCCeEEEEe
Confidence 345 89999999999999998876 7999999998654 555543
No 21
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=5.8e-34 Score=266.79 Aligned_cols=285 Identities=14% Similarity=0.105 Sum_probs=196.3
Q ss_pred CCCCeeEEe-CCCCCCCCCceEEEeecCCCCcc-------------CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhh
Q psy12424 11 IGLDSCIIP-LASGRSPSPLYLIQSTDFFYPLV-------------THPHIMGAIACANVLSDIYAVGVTDIDALQMIVG 76 (324)
Q Consensus 11 ~gdDaavi~-~~~~~~~~~~~lv~t~D~~~~~~-------------~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~ 76 (324)
++.+|.+++ +-. .++++.||.+||+..... .....+||++|++|+|||+||||+|+++ +++ +
T Consensus 33 ~~~~~~~~~~~~~--~~~~pvLv~~tDGVGTKl~lA~~~~k~tg~~~~~~tIG~daVam~VNDIaamGA~Pl~~-L~~-a 108 (394)
T 3kiz_A 33 PRAFCKIIPDILG--GDPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAVDNIL-LSS-T 108 (394)
T ss_dssp TTSSSCCEECTTT--CCTTEEEEEEEEECTTHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHGGGTCCSSEE-EEE-E
T ss_pred CCcceeecchhhc--CCCCceEEEEccCCcHHHHHHHHhhhhcccccchhhhhhhheEeeHHHHHhCcCchHHH-HHh-h
Confidence 467777774 100 122688999999876532 1245689999999999999999999976 565 5
Q ss_pred cCC---CCChhHHhhHHHHHHHHHHHHH---HHhC--CeeeCccccccCCc----eEeEEEEEeeeCCcccCCCCCCCCC
Q psy12424 77 IST---QLTEDERDIIVPMLIEGFKAQA---SVAG--VNISKVAVKLNPWM----TIGGVVTSVCSSEEFVMPNQAQPGD 144 (324)
Q Consensus 77 ~p~---~~~~~~~~~~~~~i~~Gi~~a~---~~~g--~~ivGGdt~~~~~~----~i~~t~iG~~~~~~~~~~~~a~~GD 144 (324)
+|. ..++ ++++++++|++++| +++| |+++||||.+.|.+ .+++|++|.+++++++++++++|||
T Consensus 109 ~g~l~~~~~~----e~l~~Iv~Gi~e~~~~~~~aGvg~~LVGGeTae~p~l~~~~~i~~t~vGiV~~~~ii~~~~ak~GD 184 (394)
T 3kiz_A 109 IGRNKNLIPG----EVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVRTIIVDSTVTCRMKRQDVISNENIKAGN 184 (394)
T ss_dssp EEECTTTSCH----HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSSEEEEEEEEEEEEGGGCCCGGGCCTTC
T ss_pred cCcCccCCCH----HHHHHHHHHHHHHHHHHHHhCCCceEEeeeeeEcCCcccCccEEEEEEEEEccCcccccccCCCCC
Confidence 653 2344 69999999999999 6998 69999999999865 5778999999999999999999999
Q ss_pred EEEEeCCCCh---------HHHHHHHHhhhhh--hh---------hh-------------hhhcccCChHHHHHHHHHHH
Q psy12424 145 VIILTKPLGT---------QMSVTIRSWLKNE--EK---------LS-------------FLKSIKVDSAMLKQCVNSAI 191 (324)
Q Consensus 145 ~Ii~tg~~G~---------~~~~~~~~~~~~~--~~---------~~-------------~~~~~~~~~~~~~~~~~~~~ 191 (324)
.|+++++.|. +.++|+|++.+.- .+ +. .+... ++.. .+.+.+.+
T Consensus 185 ~IIgl~SsG~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~--~~~lge~L 261 (394)
T 3kiz_A 185 VIVGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVPENLVYSGEMNLTDP-YLNV--PLDAGKLV 261 (394)
T ss_dssp EEEEEESSBCCTTCSSCBCCCTTSSHHHHHHHHBCTHHHHHCGGGSCTTSCGGGSSCSSBCTTCC-CTTC--SSCHHHHH
T ss_pred EEEEECCcccccccccccCCccchHHHHHHHHHHhhhhhhccccccccccccccccccccccccc-cccc--CCcHHHHH
Confidence 9999998882 2345566554310 00 00 00000 1100 00111111
Q ss_pred HHHHHHH-HHHHHHHHhc--cCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCC
Q psy12424 192 TLMATIN-KKAAILMKKY--NAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGH 268 (324)
Q Consensus 192 ~~~~~~~-~~~~~~~~~~--~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~ 268 (324)
-..+++. +....+++.. .||+|.|||+|||.. +.++. .++++ .|+.+.||+++...++++..+.++.+ |+.-|
T Consensus 262 L~PTriY~~~v~~ll~~~~~~I~gmaHITGGGl~~-~~R~l-p~~~~-~I~~~~wpvppiF~~l~~~G~v~~~E-M~rtF 337 (394)
T 3kiz_A 262 LSPTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQTK-VLHFT-DATTH-IIKDNLFDVPPLFQLIQGQSNTPWEE-MYKVF 337 (394)
T ss_dssp HCCCCCCHHHHHHHHHHSTTCCSEEEECCTTGGGG-GGGGC-CTTCE-EEECSCCCCCHHHHHHHHHHTCCHHH-HHHHS
T ss_pred hhHHHHHHHHHHHHHHhhhccceEeeccCccchhh-hhhhc-CCccE-EEcCCCCCCCHHHHHHHHhCCCCHHH-HHHhc
Confidence 1111111 1112344443 599999999999987 55776 56788 89999999977666666666665543 33334
Q ss_pred Cccccc-eEEEEEchhhHHHHHHHHhc---ccceEEEEecC--CCcEEEec
Q psy12424 269 GIETSG-GLFICLPEDHAKDFIKEMNG---LAWIIGKVTPG--DRSVIIKD 313 (324)
Q Consensus 269 ~~es~G-~ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~--~~~~~l~~ 313 (324)
+.| +|+++|++++++++++.+++ ++|+||+|+++ ++.+.+..
T Consensus 338 ---NmGiGmVlvV~~e~a~~vl~~L~~~G~~A~iIG~V~~~~~~~~V~l~t 385 (394)
T 3kiz_A 338 ---NMGHRLEIYTDAAHAEGMIAIAKKFNIEAKIIGRVEAPVAGKRLTITG 385 (394)
T ss_dssp ---CTTEEEEEEECHHHHHHHHHHHHHTTCCEEEEEEEESCBTTBSEEEEC
T ss_pred ---CCcccEEEEECHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCeEEEEe
Confidence 345 89999999999999999876 79999999976 33455543
No 22
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.97 E-value=8.8e-30 Score=269.77 Aligned_cols=263 Identities=13% Similarity=0.066 Sum_probs=189.2
Q ss_pred CCCCeeEEeCCC-CCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhc--CCCCChhHH
Q psy12424 11 IGLDSCIIPLAS-GRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGI--STQLTEDER 86 (324)
Q Consensus 11 ~gdDaavi~~~~-~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~--p~~~~~~~~ 86 (324)
+++||||++++. . +..+++|+|+++++. .|||.+|++||++|+|||+|||++|+..+..+++| |...+ + .
T Consensus 684 p~~DaAVi~~~~~~----~~gla~s~g~~p~~~~~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P-~-~ 757 (1303)
T 3ugj_A 684 PVADCAVTTASLDS----YYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHP-G-E 757 (1303)
T ss_dssp ECCSSEEEESSTTC----SCEEEEEEEECGGGGGTCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTST-T-H
T ss_pred CCCCeEEEEEeCCC----CeEEEEEEecCCCccccCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCC-c-h
Confidence 589999999862 2 578999999988864 79999999999999999999999999743223333 22222 1 2
Q ss_pred hhHHHHHHHHHH-HHHHHhCCeeeCccccccC---------------CceEeEEEEEeeeC-CcccCCCCCCCCCEEEEe
Q psy12424 87 DIIVPMLIEGFK-AQASVAGVNISKVAVKLNP---------------WMTIGGVVTSVCSS-EEFVMPNQAQPGDVIILT 149 (324)
Q Consensus 87 ~~~~~~i~~Gi~-~a~~~~g~~ivGGdt~~~~---------------~~~i~~t~iG~~~~-~~~~~~~~a~~GD~Ii~t 149 (324)
.+++.++++|+. ++|+++|++++|||++.|. .+++.++++|.+++ .+.+++..+++||.|+++
T Consensus 758 ~~~L~~a~~g~~~d~c~~lgvpiiGGkdSlsn~t~~~~~g~~~~v~~P~TlvitavG~v~dv~~~vt~~~k~~Gd~LilV 837 (1303)
T 3ugj_A 758 DAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLI 837 (1303)
T ss_dssp HHHHHHHHHHHHTTHHHHHTCEEEEEEEECBCEEEECCC--CEEEECCCEEEEEEEEEESCGGGCCCSCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeccccCccceecccCCCcCccCCCCceEEEEEEECCCcCcccCcccCCCCCEEEEE
Confidence 367889999999 9999999999999988763 13778889998876 778899999999988764
Q ss_pred --C----CCChHHHHHHHHhhhhhhhhh-hhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeEeeccCCccc
Q psy12424 150 --K----PLGTQMSVTIRSWLKNEEKLS-FLKSIKVD-SAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGL 221 (324)
Q Consensus 150 --g----~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~GGL 221 (324)
| .+|.+.+.. .+ ++.. ... . +. .+. ....+ .....++++..++||||+|+|||
T Consensus 838 ~lg~~~~~LGGS~la~---~~---g~~g~~~P-~-vd~~~~----lk~~~-------~~v~~li~~G~v~AahDvSdGGL 898 (1303)
T 3ugj_A 838 DLGKGHNALGATALAQ---VY---RQLGDKPA-D-VRDVAQ----LKGFY-------DAMQALVAARKLLAWHDRSDGGL 898 (1303)
T ss_dssp ETTTTCCCCTTSHHHH---HT---TCCCSCCC-C-CCCHHH----HHHHH-------HHHHHHHHTTCCSEEEECCTTHH
T ss_pred ECCCCCCCccHHHHHH---Hh---CcccCCCC-C-CCCHHH----HHHHH-------HHHHHHHHcCCeEEEEeCCCChH
Confidence 3 467665421 11 1110 000 0 21 111 11111 11123455556999999999999
Q ss_pred cchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhc---c--c
Q psy12424 222 TGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG---L--A 296 (324)
Q Consensus 222 ~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~---~--~ 296 (324)
+.+|.|||.++++|++|+++.+|.++... || .|+.| .+++|++++.+++++.++. + +
T Consensus 899 a~aL~Ema~as~vG~~Idl~~ip~~~~~~-------------LF----~E~~G-~vv~V~~~~~~~v~~~l~~~gi~~~a 960 (1303)
T 3ugj_A 899 LVTLAEMAFAGHCGVQVDIAALGDDHLAA-------------LF----NEELG-GVIQVRAEDRDAVEALLAQYGLADCV 960 (1303)
T ss_dssp HHHHHHHHHHHTSEEEEECGGGCSCHHHH-------------HH----CCCSE-EEEEEEGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHhCCceEEEEecCCCCchhHH-------------Hh----CCCCC-eEEEEEHHHHHHHHHHHHhCCCCCce
Confidence 99999999999999999999888754221 11 12344 5799999999999888876 3 6
Q ss_pred ceEEEEecCCCcEEEecCCce
Q psy12424 297 WIIGKVTPGDRSVIIKDSPDI 317 (324)
Q Consensus 297 ~~IG~V~~~~~~~~l~~~~~~ 317 (324)
.+||+|++++ .+.+..+++.
T Consensus 961 ~~IG~V~~~~-~l~i~~~g~~ 980 (1303)
T 3ugj_A 961 HYLGQALAGD-RFVITANDQT 980 (1303)
T ss_dssp EEEEEEESSS-EEEEEETTEE
T ss_pred EEEEEEcCCC-cEEEEECCEE
Confidence 7899999764 5777666654
No 23
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.96 E-value=3.6e-29 Score=250.89 Aligned_cols=213 Identities=9% Similarity=0.043 Sum_probs=165.7
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCceEEEeecCCCCcc-CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhH
Q psy12424 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLV-THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDE 85 (324)
Q Consensus 7 ~~~~~gdDaavi~~~~~~~~~~~~lv~t~D~~~~~~-~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~ 85 (324)
..++|||||||+++++ +..+++|+|+++++. .|||.+||+|+++|+|||+||||+|+++ +++++||...+++
T Consensus 393 ~~~~pg~DaaV~~~~~-----~~~~~~t~d~~~~~~~~dP~~~g~~Avaealsdl~A~Ga~p~~~-~~~l~~~~~~~~~- 465 (615)
T 1vk3_A 393 TVVPPGFGAAVMRIKR-----DGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAI-TNCVNYGDPDVDP- 465 (615)
T ss_dssp SSSCGGGSCEEEEEET-----TEEEEEEEECCHHHHTTCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEECSCTTTCH-
T ss_pred eeeccCCCeEEEEEcC-----CcEEEEEecCCCcccccCHHHHHHHHHHHHHHHHHHcCCcccee-EEEEecCCCCCch-
Confidence 3468899999999875 578999999987764 8999999999999999999999999986 5778897643442
Q ss_pred HhhHHHHHHHHHHHHHHHhCCeeeCccccccCC-------ceEeEEEEEeeeCCcccCCCCCCCCCEEEEeCCCChHHHH
Q psy12424 86 RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPW-------MTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSV 158 (324)
Q Consensus 86 ~~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg~~G~~~~~ 158 (324)
+++.++++|+.++|+++|++++|||++.+++ ++++++++|.++..+.++ +++|| |+++|...
T Consensus 466 --~~l~~~~~G~~~~~~~~g~~~igG~~S~~~~~~~~~~ppt~~i~a~G~v~~~~~~~---~~~Gd-l~l~g~~~----- 534 (615)
T 1vk3_A 466 --VGLSAMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAK---PKPSK-VFAVGWND----- 534 (615)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEECGGGCCC---CCSEE-EEEEEESS-----
T ss_pred --HHHHHHHHHHHHHHHHcCCCcccccccccCcCCCCcCCCeeEEEEEEEecCCcccc---CCCCe-EEEECCCC-----
Confidence 3699999999999999999999999987654 588899999998766666 79999 99998432
Q ss_pred HHHHhhhhhhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCeEeeccCCccccchhHHhhhhCCCeEE
Q psy12424 159 TIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKY-NAHACTDVTGYGLTGHATNLVKYQTNSVN 237 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~a~~DiS~GGL~~~L~~la~~s~~g~~ 237 (324)
+..+.. ... +.++ ..++.+. .++||||||+ | +|.|| . +++|++
T Consensus 535 -------------------~~~~~~----~~~---~~~~----~~~~~~~~~v~a~~DvSd-G---~l~em-~-s~~g~~ 578 (615)
T 1vk3_A 535 -------------------FELERE----KEL---WRAI----RKLSEEGAFILSSSQLLT-R---THVET-F-REYGLK 578 (615)
T ss_dssp -------------------CCHHHH----HHH---HHHH----HHHHHTTCEEECCTTSSC-H---HHHHH-H-HHTTCE
T ss_pred -------------------CCHHHH----HHH---HHHH----HHHHhCCCeEEEEEECCC-C---HHHHH-h-CCCcEE
Confidence 111100 000 1111 2245556 6999999999 5 99999 7 999999
Q ss_pred EEecCCCCChhHHHHhcccCCcccccccCCCCccccceEEEEEchhhHHHHHHHHhcccceEEEEe
Q psy12424 238 FMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVT 303 (324)
Q Consensus 238 i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ll~~v~~e~~~~~~~~l~~~~~~IG~V~ 303 (324)
|+++++|+++ ..+|| +||+.++.. +.-+++.||+|+
T Consensus 579 i~~~~iP~~~-------------------~~d~~----llfse~~~~-------~~v~~~~IG~v~ 614 (615)
T 1vk3_A 579 IEVKLPEVRP-------------------AHQMV----LVFSERTPV-------VDVPVKEIGTLS 614 (615)
T ss_dssp EEECCCCCCS-------------------SCEEE----EEEESSCCC-------CSSCEEEEEEEE
T ss_pred EEeCCCCCCC-------------------CcccE----EEEeccccc-------CCCCeeEeeeEe
Confidence 9999999763 13466 999986542 111788999986
No 24
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.91 E-value=5.3e-24 Score=225.75 Aligned_cols=282 Identities=13% Similarity=0.030 Sum_probs=179.7
Q ss_pred CCCCCCeeEEeCC-------CCCCC------CCceEEEeecC-CCCccCChhhHHHHHHHHhhhHHHhc--CcchhhhhH
Q psy12424 9 IEIGLDSCIIPLA-------SGRSP------SPLYLIQSTDF-FYPLVTHPHIMGAIACANVLSDIYAV--GVTDIDALQ 72 (324)
Q Consensus 9 ~~~gdDaavi~~~-------~~~~~------~~~~lv~t~D~-~~~~~~~p~~~G~~av~~~~sDi~a~--Ga~P~~~~l 72 (324)
.++||+|+||+.. +.++. .+..+++...+ ++|...+||.++...+-..+||+.+| ||+|++. +
T Consensus 262 ~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~v~fK~ETHNHPsaIePf~GAaTGvGG~iRD~~~~G~GarPiA~-~ 340 (1303)
T 3ugj_A 262 SAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAG-L 340 (1303)
T ss_dssp ECSSSSSEEEEEEEEEEEEECTTTCBEEEEEEEEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTSTTCCEEEEE-E
T ss_pred EEecCccEEeeecccccccccCCccccccccceeEEEEEEeccCCCCccCCcCcccceeEEEEEchhccCCCCEeeee-e
Confidence 4789999999742 10000 01346666663 45555699999999999999999995 9999976 5
Q ss_pred hhhhc-----CCCCChhH-------H----hhHHHHHHHHHHHHHHHhCCeeeCccccc-c--------------CCceE
Q psy12424 73 MIVGI-----STQLTEDE-------R----DIIVPMLIEGFKAQASVAGVNISKVAVKL-N--------------PWMTI 121 (324)
Q Consensus 73 ~~l~~-----p~~~~~~~-------~----~~~~~~i~~Gi~~a~~~~g~~ivGGdt~~-~--------------~~~~i 121 (324)
+.+++ |....|.+ + ...+.+-+.|+.++++++|+|+++|+|.. . ..+.+
T Consensus 341 ~~~~~~~lr~~~~~~p~e~~~g~p~~~~~~~~i~~~g~~G~s~ygN~~Gvp~V~G~~~~~~~~~~~~~~~~~~g~~kp~v 420 (1303)
T 3ugj_A 341 VGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIM 420 (1303)
T ss_dssp EEEEESCCCCTTCCCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECEEEEEETTEEEEEECSSCEE
T ss_pred eeeeeccccCCCCCCccccccCCchhccChhhhhhcccchHHHHHHhcCCCCcceEEEEEeeeccccccccccccCCcee
Confidence 55433 32111100 0 02233333499999999999999999842 1 24666
Q ss_pred eEEEEEeeeCCcccCCCCCCCCCEEEEeC----CCChHHHHHHHHhhhhhhhhhhh--hcccCChHHHHHHHHHHHHHHH
Q psy12424 122 GGVVTSVCSSEEFVMPNQAQPGDVIILTK----PLGTQMSVTIRSWLKNEEKLSFL--KSIKVDSAMLKQCVNSAITLMA 195 (324)
Q Consensus 122 ~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg----~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 195 (324)
..+++|.+++++ +.+..++|||.|+++| ..|.++.+ .+.....+....+ ...+...+++++...
T Consensus 421 ~~~gvG~i~~~~-~~~~~~~~Gd~Iiv~Gg~tgr~G~gGaa--~sS~~~~~~~~~~~~~~VQ~g~p~~ek~~~------- 490 (1303)
T 3ugj_A 421 LAGGIGNIRADH-VQKGEIVVGAKLIVLGGPAMNIGLGGGA--ASSMASGQSDADLDFASVQRDNPEMERRCQ------- 490 (1303)
T ss_dssp EEEEEEEECGGG-SSCCCCCTTCEEEEEECCBCTTCC-------------------CGGGCCCCCHHHHHHHH-------
T ss_pred EEEEEEEEehHH-cccccCCCCCEEEEECCCCCcccCcHHH--HhHHhhcccccccCchhhccCCHHHHHHHH-------
Confidence 677899998765 4555699999999987 67766542 1111110000000 100011222222111
Q ss_pred HHHHHHHHHHHhccCeEeeccCCccccchhHHhhhhCCCeEEEEecCCCCChhHHHHhcccCCcccccccCCCCccccce
Q psy12424 196 TINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGG 275 (324)
Q Consensus 196 ~~~~~~~~~~~~~~v~a~~DiS~GGL~~~L~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~l~~g~~~es~G~ 275 (324)
++.+...+++....|++|||+|.|||.++|.||++.+++|++|+++++|+.+....- ++ .+. .|+.++
T Consensus 491 ~li~~~lel~~~~~V~a~~D~t~GGL~~~l~Ema~~sgvG~~Idld~vP~~~~gl~p-------~e-i~~----sesqer 558 (1303)
T 3ugj_A 491 EVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP-------LE-IWC----NESQER 558 (1303)
T ss_dssp HHHHHHHTTGGGCCEEEEEECCTTTHHHHHHHHHHHTTCEEEEEGGGSCBSCTTCCH-------HH-HHH----CCCSSE
T ss_pred HHHHHHHHHhccCCeeEEEECCCcHHHHHHHHHHHHcCCeEEEEhhhCCCCccCCCH-------HH-HHh----CcCcce
Confidence 111111223445569999999999999999999999999999999999987642111 11 011 234468
Q ss_pred EEEEEchhhHHHHHHHHhc---ccceEEEEecCCCcEEEecC
Q psy12424 276 LFICLPEDHAKDFIKEMNG---LAWIIGKVTPGDRSVIIKDS 314 (324)
Q Consensus 276 ll~~v~~e~~~~~~~~l~~---~~~~IG~V~~~~~~~~l~~~ 314 (324)
|+++|+|++++++++.+++ ++++||+|++++ ++++...
T Consensus 559 ml~~V~pe~~~~~~~~~~~~g~~a~vIG~Vt~~~-~v~l~~~ 599 (1303)
T 3ugj_A 559 YVLAVAADQLPLFDELCKRERAPYAVIGDATEEQ-HLSLHDN 599 (1303)
T ss_dssp EEEEECGGGHHHHHHHHHHHTCCEEEEEEEESSC-EEEEEET
T ss_pred EEEEECHHHHHHHHHHHHHcCCCeEEEEEEecCC-eEEEEEC
Confidence 9999999999999998887 899999999865 5666553
No 25
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=30.19 E-value=32 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred HhCCeeeCccccccCCceEeEEEEEeeeCCcccCCCC-CCCCCEEEEeC
Q psy12424 103 VAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQ-AQPGDVIILTK 150 (324)
Q Consensus 103 ~~g~~ivGGdt~~~~~~~i~~t~iG~~~~~~~~~~~~-a~~GD~Ii~tg 150 (324)
.+|+.+.||.........-....+..+.++.+-.+.+ .++||.|+-..
T Consensus 18 glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~in 66 (98)
T 1ihj_A 18 SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66 (98)
T ss_dssp SCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEET
T ss_pred CcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 4677777765433211111222344454545555566 99999998764
No 26
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=22.92 E-value=75 Score=22.71 Aligned_cols=46 Identities=17% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HhCCeeeCcccccc-CCceEeEEEEEeeeCCcccCCCCCCCCCEEEEeC
Q psy12424 103 VAGVNISKVAVKLN-PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTK 150 (324)
Q Consensus 103 ~~g~~ivGGdt~~~-~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii~tg 150 (324)
.+|+.+.||.-... +...-++. +..+.++.+-. .+.++||.|+-..
T Consensus 20 glG~~i~~~~~~~~~~~~~~gv~-V~~V~~~spA~-agl~~GD~I~~vn 66 (107)
T 2h2b_A 20 GFGIAISGGRDNPHFQSGETSIV-ISDVLKGGPAE-GQLQENDRVAMVN 66 (107)
T ss_dssp BTCEEEEECTTSCCTTTCCCCEE-EEEECTTSTTB-TTBCTTCEEEEET
T ss_pred ccCEEEecCcCCCcccCCCCCEE-EEEECCCCchh-hCCCCCCEEEEEC
Confidence 46788887643211 10111222 33444444445 7899999998764
No 27
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=21.62 E-value=81 Score=28.94 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHhhhHHHhcCcchhhhhHhhhhcCCCCChhHHhhHHHHHHHHHHHHHHHhCCeee
Q psy12424 43 THPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNIS 109 (324)
Q Consensus 43 ~~p~~~G~~av~~~~sDi~a~Ga~P~~~~l~~l~~p~~~~~~~~~~~~~~i~~Gi~~a~~~~g~~iv 109 (324)
.|.+..|+.|+.. +..+|++-+++ ++.|.+++. +...+=.+|++++|+++|+++.
T Consensus 138 ~Dn~~Ggy~A~~~----Li~~Ghk~Ia~----Isgp~~~~~----~~~~~R~~Gyk~Al~e~Gi~~~ 192 (371)
T 3qi7_A 138 VSAEERGKVLAER----SKEMGAKAFIH----YASTDDLKD----VNIAKRLEMIKETCKNIGLPFV 192 (371)
T ss_dssp CCHHHHHHHHHHH----HHHTTCSCEEE----EEETTGGGS----HHHHHHHHHHHHHHHHTTCCEE
T ss_pred eChHHHHHHHHHH----HHHCCCCEEEE----Eeccccccc----hhHHHHHHHHHHHHHHcCCCce
Confidence 3667788877665 45799999864 355654332 2344467999999999999873
No 28
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.46 E-value=1.1e+02 Score=20.92 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=19.7
Q ss_pred eEEEEEeeeCCccc-C--CCCCCCCCEEEEeCCC
Q psy12424 122 GGVVTSVCSSEEFV-M--PNQAQPGDVIILTKPL 152 (324)
Q Consensus 122 ~~t~iG~~~~~~~~-~--~~~a~~GD~Ii~tg~~ 152 (324)
++++++....++.+ + ....++||.|++.++.
T Consensus 40 ~~~i~~I~R~~~~~~p~~~~~l~~GD~l~v~g~~ 73 (86)
T 3jxo_A 40 DSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSA 73 (86)
T ss_dssp SEEEEEEEETTEEECCCTTCBCCTTCEEEEEEET
T ss_pred CCEEEEEEECCEEECCCCCCEECCCCEEEEEECH
Confidence 45556665544432 2 2347999999998754
Done!