RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12424
(324 letters)
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and
eukaryotic organisms for synthesis of Secys-tRNA, the
precursor of selenocysteine in selenoenzymes. The
N-terminal domain of SelD is related to the ATP-binding
domains of hydrogen expression/formation protein HypE,
the AIR synthases, and FGAM synthase and is thought to
bind ATP.
Length = 287
Score = 218 bits (559), Expect = 6e-70
Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 50/300 (16%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
LV + G D+ + L G + L+Q+TDFF P+V P++ G IA AN LSDIYA+G
Sbjct: 35 LVGLGTGDDAAVYRLPGGLA-----LVQTTDFFPPIVDDPYLFGRIAAANALSDIYAMGA 89
Query: 66 TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVV 125
+ AL IV + +L ++ ++ ++ G K + AG + P G V
Sbjct: 90 KPLSAL-AIVTLPRKL-PALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKYGLSV 147
Query: 126 TSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ 185
T + + + + A+PGDV+ILTKPLGT + +
Sbjct: 148 TGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAEMAGLARGED--------------- 192
Query: 186 CVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245
+++A+ MA +N+ AA L++KY AHACTDVTG+GL GH + + S + LP+
Sbjct: 193 -IDAALESMARLNRAAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPL 251
Query: 246 LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM---NGLAWIIGKV 302
L +TSGGL +P + A + + A IIG+V
Sbjct: 252 L------------------------QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287
>gnl|CDD|232993 TIGR00476, selD, selenium donor protein. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several elements: SelC is the
tRNA itself, SelD acts as a donor of reduced selenium,
SelA modifies a serine residue on SelC into
selenocysteine, and SelB is a selenocysteine-specific
translation elongation factor. 3-prime or 5-prime
non-coding elements of mRNA have been found as probable
structures for directing selenocysteine incorporation.
This model describes SelD, known as selenophosphate
synthetase, selenium donor protein, and selenide,water
dikinase. SelD provides reduced selenium for the
selenium transferase SelA. This protein itself contains
selenocysteine in many species; some member sequences
giving partial hits only may have selenocysteine residue
incorrectly interpreted as a stop codon upstream of the
given sequence. The SelD protein also provides
selenophosphate for the enzyme tRNA 2-selenouridine
synthase, which catalyzes a tRNA base modification. All
genomes with SelD should make selenocysteine,
selenouridine, or both.
Length = 347
Score = 211 bits (539), Expect = 2e-66
Identities = 123/315 (39%), Positives = 170/315 (53%), Gaps = 27/315 (8%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
LV +G D+ I +G L L+Q+TD+ P+V P++MG IA AN LSDIYA+G
Sbjct: 44 LVGAVMGDDAVIYLRHNG-----LSLVQTTDYITPIVDDPYMMGRIAAANALSDIYAMGG 98
Query: 66 TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVV 125
T IDA+ +++G+S +LT ++ +I+GFK AG +++ LNPW GG V
Sbjct: 99 TPIDAMLILLGVSNKLT----IEVMREVIQGFKDACREAGTSLTGGHTILNPWPVFGGAV 154
Query: 126 TSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ 185
T VC EE + P+ AQ GDV+ILTKPLGTQ++V + WL + LS K +V+ A
Sbjct: 155 TGVCPEEEVITPSGAQVGDVLILTKPLGTQVAVAVHKWLDIPKDLSITKE-EVELA---- 209
Query: 186 CVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245
+N AI MA +N+KAA LM +NAHA TD+TG+G+ GHA N+ K +I LP+
Sbjct: 210 -INEAIENMARLNRKAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPV 268
Query: 246 LYPLGVIASRPGTRFYQNVNRGHGIETSGG-LFICLPEDHAKDFIKEMNG-------LAW 297
L + ++ G F HG GG L CLP + A + A
Sbjct: 269 LAKMEELSKLCGNPF----GLMHGTCPEGGGLLSCLPREKAALLCDPIKSGGYLFGVQAE 324
Query: 298 IIGKVTPGDRSVIIK 312
IIG V II
Sbjct: 325 IIGIVEKTATERIID 339
>gnl|CDD|237611 PRK14105, PRK14105, selenophosphate synthetase; Provisional.
Length = 345
Score = 170 bits (433), Expect = 1e-50
Identities = 98/309 (31%), Positives = 161/309 (52%), Gaps = 33/309 (10%)
Query: 6 LVRIEIGL--DSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAV 63
L ++GL D+ +I + L ++++ D F P+V P+I G IA N SD+YA+
Sbjct: 39 LKHTKVGLGDDAAVI------IKNGLAIVKTVDVFTPIVDDPYIQGKIAACNSTSDVYAM 92
Query: 64 GVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGG 123
G+++I + +I+GI +L + + +++GF+ I LNPW IGG
Sbjct: 93 GLSEIIGVLVILGIPPELPIE----VAKEMLQGFQDFCRENDTTIIGGHTILNPWPLIGG 148
Query: 124 VVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAML 183
VT V E+ + A+ GDV+ILTKPLGTQ ++ + S + E F I +
Sbjct: 149 AVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSAMAL-SRVPEE----FEDLIDITKEEK 203
Query: 184 KQCVNSAITLMATINKKAAILMKKYN-------AHACTDVTGYGLTGHATNLVKYQTNSV 236
+ +N AI LM T N+ A + +++ A+A TDVTG+G+ GH+ + + Q+N V
Sbjct: 204 EYIINKAIELMTTSNRYALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAE-QSN-V 261
Query: 237 NFMIHTLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM---N 293
I TLP++ ++S F + G+G ET+GGL I + ++ I ++ N
Sbjct: 262 EIEISTLPVIKGTPELSS----LFGHALLDGYGAETAGGLLISVKPEYKDKLIDKLEKNN 317
Query: 294 GLAWIIGKV 302
A+ +GKV
Sbjct: 318 VYAFEVGKV 326
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 99.7 bits (249), Expect = 6e-24
Identities = 92/331 (27%), Positives = 141/331 (42%), Gaps = 54/331 (16%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
LV E G D+ + L +G S +I +TDFF P+V P G IA N +SD++A+G
Sbjct: 43 LVGNETGDDAAVYDLGNGHS-----IISTTDFFMPIVDDPFDFGRIAATNAISDVFAMGG 97
Query: 66 TDIDALQMIVGISTQLTEDE--RDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGG 123
I A+ I+G L + E +++I +A ++AG S A + G
Sbjct: 98 KPIMAIA-ILGFPNDLLDKEIAQEVIEGGRDACREAGIALAG-GHSIDAPEPI----FGL 151
Query: 124 VVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAML 183
VT + + + + A+ G +ILTKPLG + L EK LK
Sbjct: 152 AVTGIVPTGKVKRNSTAKAGCKLILTKPLGIGI-------LTTAEKKGLLK--------- 195
Query: 184 KQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTL 243
++ A+ M T+NK A + A TDVTG+GL GH + + V+ +
Sbjct: 196 EEHKGLALENMCTLNKIGAQFAPDFGVAAMTDVTGFGLLGHLKEMA--EGAGVDARLFDS 253
Query: 244 PILYPLGV---IASR--PGTRFYQNVNRGHGI---------------ETSGGLFI-CLPE 282
PI + GV I + PG + G +TSGGL I +PE
Sbjct: 254 PIPFLDGVEFYIENGIIPGGTARNFGSYGIFAGKDLPEEQKLLLCDPQTSGGLLIAVVPE 313
Query: 283 DHAK--DFIKEMNGLAWIIGKVTPGDRSVII 311
+ + E+ IIG++ R++I
Sbjct: 314 GKGEGLEIAPELGIQLIIIGELVAKQRALIE 344
>gnl|CDD|234870 PRK00943, PRK00943, selenophosphate synthetase; Provisional.
Length = 347
Score = 88.4 bits (220), Expect = 7e-20
Identities = 65/214 (30%), Positives = 87/214 (40%), Gaps = 60/214 (28%)
Query: 31 LIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVG--ISTQLTEDERDI 88
+I +TDFF P+V P G IA N +SDIYA+G I A+ I+G I+ E R++
Sbjct: 63 IISTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGKPIMAIA-ILGWPINKLPPEVAREV 121
Query: 89 IVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGG------------VVTSVCSSEEFVM 136
+ EG +A AG+ ++ GG VT V E
Sbjct: 122 L-----EGGRAACRQAGIPLA------------GGHSIDAPEPIFGLAVTGVVPPERVKR 164
Query: 137 PNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ------CVNSA 190
AQ GD + LTKPLG I + + K+ A
Sbjct: 165 NATAQAGDKLFLTKPLG----------------------IGILTTAEKKSKLKPEHYGLA 202
Query: 191 ITLMATINKKAAILMKKYNAHACTDVTGYGLTGH 224
I M +N+ A K HA TDVTG+GL GH
Sbjct: 203 IEAMCQLNRPGADFAKLPGVHAMTDVTGFGLLGH 236
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 67.8 bits (166), Expect = 7e-14
Identities = 30/176 (17%), Positives = 50/176 (28%), Gaps = 29/176 (16%)
Query: 141 QPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKK 200
+PGDV+IL G S L + D + +
Sbjct: 1 KPGDVLILLGSSGLHGSGL---SLVRKGLEDDGAVPLGDPLLEPTLI-----------YV 46
Query: 201 AAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRF 260
+L A D+TG GL G + + +PI L
Sbjct: 47 VLLLAALGLVKAAHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEEL----------- 95
Query: 261 YQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGDRSVIIKD 313
E G + + + A+ + + A +IG+VT G ++
Sbjct: 96 -LLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEGLPAAVIGEVTAGGGLTLVVK 150
>gnl|CDD|216008 pfam00586, AIRS, AIR synthase related protein, N-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
N-terminal domain of AIR synthase forms the dimer
interface of the protein, and is suggested as a putative
ATP binding domain.
Length = 96
Score = 42.9 bits (102), Expect = 1e-05
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 12 GLDSCIIPLASGRSPSPLYLIQSTDFF----YPLVTHPHIMGAIACANVLSDIYAVGVTD 67
G D+ +I L G+ L+ +TD + P+ GA A A LSD+ A+G
Sbjct: 1 GDDAAVIRLGEGK-----ALVVTTDGVVTHVHFAAIDPYDGGATAVAGNLSDLAAMGAKP 55
Query: 68 IDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI 108
+ AL + + L + + ++ G A+ GV +
Sbjct: 56 L-ALLDGLALGEGLDPE----WLEEIVRGIAEAANEFGVPL 91
>gnl|CDD|223386 COG0309, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 339
Score = 41.9 bits (99), Expect = 2e-04
Identities = 74/325 (22%), Positives = 125/325 (38%), Gaps = 56/325 (17%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFY--PLVTHPHIMGAIACANVLSDIYAV 63
V + G D+ II L G L +TD F PL +G +A +D+
Sbjct: 32 NVGLANGEDAAIIDLGDGV------LAFTTDPFVIDPLFFPGGDIGKLAVHGTANDVAVS 85
Query: 64 GVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI----SKVAVKLNPWM 119
G L + + + L ++ + I ++ +A AGV+I +KV +
Sbjct: 86 GAKP-RYLSVGLILPEGLPIEDLERI----LKSIDEEAEEAGVSIVTGDTKVVPGGKDPI 140
Query: 120 TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQ-MSVTIRSWLKNEEKLSFLKSIKV 178
I + E V P+ A+PGD +I+T +G S+ L + +
Sbjct: 141 VINTTGIGIIDKEILVSPSGARPGDAVIVTGTIGIHGASI-----LAHRFGEELETELGS 195
Query: 179 DSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNF 238
D A L + V + ++++ A M D T GL G A N + + V
Sbjct: 196 DCAPLAKLVKALLSVVGEALAAAVTAMH--------DATRGGLAG-ALNEMAEA-SGVGI 245
Query: 239 MIH--TLPILYPLGVIASRPGTRFYQNVNRGHGIE-----TSGGLFICLPEDHAKDFIKE 291
I +P+ R R V G++ G L I +P +HA++ ++
Sbjct: 246 SIEEEKIPV---------REEVR---GVCELLGLDPLELANEGKLVIAVPPEHAEEVLEA 293
Query: 292 M--NGL--AWIIGKVTPGDRSVIIK 312
+ +GL A IIG+V V ++
Sbjct: 294 LRSHGLKDAAIIGEVVEEKGGVGLE 318
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the conversion of this
intermediate to thiamine pyrophosphate. The N-terminal
domain of ThiL binds ATP and is related to the
ATP-binding domains of hydrogen expression/formation
protein HypE, the AIR synthases, FGAM synthase and
selenophosphate synthetase (SelD).
Length = 291
Score = 39.1 bits (92), Expect = 0.002
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 35/137 (25%)
Query: 31 LIQSTDFFYPLVTHPHIMG--AIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDI 88
L++ F P T P +G A+A LSD+ A+G + L + +G+ E+ +
Sbjct: 44 LVEGVHF--PPDTTPEDIGWKALAVN--LSDLAAMGARPLGFL-LSLGLPPDTDEEWLE- 97
Query: 89 IVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGG-------VVTSV-----CSSEEFVM 136
G A GV + +GG +V SV + +
Sbjct: 98 ---EFYRGLAEAADRYGVPL------------VGGDTTSGSELVISVTALGEVEKGKPLR 142
Query: 137 PNQAQPGDVIILTKPLG 153
+ A+PGD++ +T LG
Sbjct: 143 RSGAKPGDLLYVTGTLG 159
>gnl|CDD|233387 TIGR01379, thiL, thiamine-monophosphate kinase. This model
describes thiamine-monophosphate kinase, an enzyme that
converts thiamine monophosphate into thiamine
pyrophosphate (TPP, coenzyme B1), an enzyme cofactor.
Thiamine monophosphate may be derived from de novo
synthesis or from unphosphorylated thiamine, known as
vitamin B1. Proteins scoring between the trusted and
noise cutoff for this model include short forms from the
Thermoplasmas (which lack the N-terminal region) and a
highly derived form from Campylobacter jejuni.
Eukaryotes lack this enzyme, and add pyrophosphate from
ATP to unphosphorylated thiamine in a single step
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 317
Score = 38.1 bits (89), Expect = 0.004
Identities = 56/288 (19%), Positives = 101/288 (35%), Gaps = 35/288 (12%)
Query: 31 LIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIV 90
L++ F P T P +G A A LSD+ A+G T + +G+ + L E +
Sbjct: 45 LVEGVHF--PPDTTPEDLGWKAVAVNLSDLAAMGATPK-WFLLSLGLPSDLDEAWLEAFY 101
Query: 91 PMLIEGFKA-QASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILT 149
L E K + G + P + + ++ + A+PGD++ +T
Sbjct: 102 DGLFEAAKQYGVPLVGGDTVSS-----PELVVTVTAIGEAPKGRALLRSGAKPGDLVFVT 156
Query: 150 KPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAILMKKYN 209
LG S L K + + + + + + + Y
Sbjct: 157 GTLG-------DSAAGLALLLKGKKEPDEEDDEA--LLQRHLRPEPRV--EEGLALAGY- 204
Query: 210 AHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQNVNRGHG 269
A+A DV+ GL ++ + + + LP+ L A +
Sbjct: 205 ANAAIDVSD-GLAADLGHIAEASGVGIVIDLDRLPLSSELAAWAEGKNPLEWA------- 256
Query: 270 IETSGG----LFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRSVIIKD 313
SGG L +P + + + G IG+VT G+ V++ D
Sbjct: 257 --LSGGEDYELVFTVPPERREALLDAAKGPLTRIGRVTEGEGVVLLAD 302
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the
protein, and is suggested as a putative ATP binding
domain.
Length = 222
Score = 37.8 bits (88), Expect = 0.004
Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 68/281 (24%)
Query: 30 YLIQSTDFFYP-LVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDI 88
L STD P L +P G +A ++DI A+G + ++ +S L+
Sbjct: 1 SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMG---ARPIALLASLS--LSNGLEVD 55
Query: 89 IVPMLIEGFKAQASVAGV-----NISKVAVKLNPWMTIGGVVTSVCSSEEFVMPNQAQPG 143
I+ +++G + GV + S + +++ V + + + A+PG
Sbjct: 56 ILEDVVDGVAEACNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPG 115
Query: 144 DVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINKKAAI 203
DV+ILT + A + AA
Sbjct: 116 DVLILTG------------------------------------------VDAVLELVAAG 133
Query: 204 LMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTRFYQN 263
HA D+T GL G L + + +P+ + +
Sbjct: 134 D-----VHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLF 188
Query: 264 VNRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGK 301
+SGGL I +P + A + +NG A +IG+
Sbjct: 189 -------NSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 37.6 bits (88), Expect = 0.006
Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 28/222 (12%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
LV G D+ ++ L+ STD P+ G +A +DI G
Sbjct: 26 LVGPGGGEDAAVVDFGGK------VLVVSTD---PITGAGKDAGWLAVHIAANDIATSGA 76
Query: 66 TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI----SKVAVKLNPWMTI 121
L + + + E+E I + A GV+I ++V + I
Sbjct: 77 RPR-WLLVTLLLPPGTDEEELKAI----MREINEAAKELGVSIVGGHTEVTPGVTRP-II 130
Query: 122 GGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSA 181
++ V P+ A+PGD I++TK G + T EE+L ++
Sbjct: 131 SVTAIGKGEKDKLVTPSGAKPGDDIVMTKGAG--IEGTAILANDFEEEL----KKRLSEE 184
Query: 182 MLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTG 223
L++ ++ + K A++ + A D T G+ G
Sbjct: 185 ELREA-AKLFYKISVV--KEALIAAEAGVTAMHDATEGGILG 223
>gnl|CDD|223684 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism].
Length = 317
Score = 35.0 bits (81), Expect = 0.036
Identities = 63/313 (20%), Positives = 115/313 (36%), Gaps = 45/313 (14%)
Query: 11 IGLDSCIIPLASGRSPSPLYLIQSTDFF-----YPLVTHPHIMGAIACANVLSDIYAVGV 65
IG D+ ++ G+ L+ +TD +P P +G A A LSD+ A+G
Sbjct: 25 IGDDAALVDAPEGQ-----RLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGA 79
Query: 66 TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVV 125
L + +G+ L E+ + L +G A GV + P +I
Sbjct: 80 RPKAFL-LSLGLPPDLDEEWLE----ALADGIFEAAKKYGVKLIGGDTNRGPL-SISVTA 133
Query: 126 TSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ 185
V ++ + A+PGD++ +T LG + L + I+ +
Sbjct: 134 IGVLPKGRALLRSGAKPGDLVAVTGTLGRSAAGLE-LLLNVLGPEDEEELIE----RHLR 188
Query: 186 CVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245
T + + + K A A D++ GL ++ + + V +I +
Sbjct: 189 ---------PTPRVELGLALAKL-ASAAMDISD-GLAADLGHIA--RASGVGIVIDEDLL 235
Query: 246 LYPLGVIASRPGTRFYQNVNRGHGIETSGG----LFICLPEDHAKDFIKEMNGLAW-IIG 300
V+ + SGG L +PE++ + + + L IIG
Sbjct: 236 PLSDAVLE------ALDELGDPLEWALSGGEDYELVFTVPEENREALLDALRSLGVTIIG 289
Query: 301 KVTPGDRSVIIKD 313
+VT G+ V++ D
Sbjct: 290 RVTEGEGVVVLVD 302
>gnl|CDD|235583 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
Length = 318
Score = 30.6 bits (70), Expect = 0.91
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 24/153 (15%)
Query: 11 IGLDSCIIPLASGRSPSPLYLIQSTD------FFYPLVTHPHIMG--AIACANVLSDIYA 62
IG D+ ++ G+ L+ STD F P + P +G A+A N LSD+ A
Sbjct: 24 IGDDAALLGPPPGQ-----RLVVSTDMLVEGVHFRPDWSSPEDLGYKALA-VN-LSDLAA 76
Query: 63 VGVTDIDALQMIVGIS--TQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMT 120
+G L + ++ L E + + +G A G + P ++
Sbjct: 77 MGARPAAFL---LALALPKDLDEAWLEALA----DGLFELADRYGAELIGGDTTRGPDLS 129
Query: 121 IGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLG 153
I + + A+PGD++ +T LG
Sbjct: 130 ISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLG 162
>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
[Nucleotide transport and metabolism].
Length = 345
Score = 30.6 bits (70), Expect = 1.1
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 275 GLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGDRSVII 311
G+ + +PE+ A+ + + A++IG+V G+ V+
Sbjct: 302 GMVLIVPEEDAEKALALLKEQGETAYVIGRVEAGEGEVVG 341
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 30.8 bits (70), Expect = 1.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 268 HGIETSGGLFICLPED 283
H +E + GLFI LPED
Sbjct: 82 HCVEPTDGLFITLPED 97
>gnl|CDD|233738 TIGR02124, hypE, hydrogenase expression/formation protein HypE.
This family contains HypE (or HupE), a protein required
for expression of catalytically active hydrogenase in
many systems. It appears to be an accessory protein
involved in maturation rather than a regulatory protein
involved in expression. HypE shows considerable homology
to the thiamine-monophosphate kinase ThiL (TIGR01379)
and other enzymes.
Length = 320
Score = 30.3 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 137 PNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAML 183
+ QPGD II++ +G I L E L F +++ D A L
Sbjct: 142 AHNLQPGDKIIVSGTIGDH-GAAI---LAVREGLGFETNLESDCAPL 184
>gnl|CDD|234191 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
anaerobic, A subunit. Members of this protein family
are the A subunit, product of the glpA gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 516
Score = 30.4 bits (69), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 268 HGIETSGGLFICLPED 283
H +E +GGLFI LPED
Sbjct: 61 HCVEDTGGLFITLPED 76
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 293
Score = 29.3 bits (67), Expect = 2.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 135 VMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAML 183
+ P+ +PGD II++ +G I L E L F I+ D A L
Sbjct: 145 ISPSNIRPGDKIIVSGTIGDH-GAAI---LAAREGLGFETDIESDCAPL 189
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 28.9 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 252 IASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM 292
+ S G ++ NRG+ GG F P D A D +EM
Sbjct: 148 VDSEEGRWNEESGNRGYKPRDKGGYFPVAPTDTAVDIRREM 188
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 28.6 bits (64), Expect = 4.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 122 GGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGT---QMSVTIRSWLKNEEKL 170
G + T+ SS++ + ++ P V+I+TKP T + + WL+ ++ L
Sbjct: 174 GNITTAERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGL 225
>gnl|CDD|193564 cd08017, M20_IAA_Hyd, M20 Peptidase Indole-3-acetic acid amino acid
hydrolase. Peptidase M20 family, Plant Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase (IAA-Asp
hydrolase; IAAspH; IAAH; IAA amidohydrolase; EC 3.5.1.-)
subfamily. IAAspH hydrolyzes indole-3-acetyl-N-aspartic
acid (IAA or auxin) to indole-3-acetic acid. Genes
encoding IAA-amidohydrolases were first cloned from
Arabidopsis; ILR1, IAR3, ILL1 and ILL2 encode active
IAA- amino acid hydrolases, and three additional
amidohydrolase-like genes (ILL3, ILL5, ILL6) have been
isolated. In higher plants, the growth regulator
indole-3-acetic acid (IAA or auxin) is found both free
and conjugated via amide bonding to a variety of amino
acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 377
Score = 28.4 bits (64), Expect = 4.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 238 FMIHTLPILYPLGVIASRPGT 258
F +H P L P G +ASRPG
Sbjct: 144 FGMHVDPAL-PTGTVASRPGP 163
>gnl|CDD|177084 CHL00182, tatC, Sec-independent translocase component C;
Provisional.
Length = 249
Score = 28.0 bits (63), Expect = 6.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 QMIVGISTQLTEDERDIIVPMLI 94
Q+I+ I LT+ ER II+P+LI
Sbjct: 100 QIILFILPGLTKKERKIILPLLI 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,454,995
Number of extensions: 1567305
Number of successful extensions: 1374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 36
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)