RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12424
(324 letters)
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 264 bits (676), Expect = 2e-86
Identities = 146/326 (44%), Positives = 207/326 (63%), Gaps = 14/326 (4%)
Query: 3 GYSLVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYA 62
G + R+ IG+D+C+IPL G L L+Q+TD+ YP+V P++MG IACANVLSD+YA
Sbjct: 60 GAVMPRLGIGMDTCVIPLRHGG----LSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYA 115
Query: 63 VGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIG 122
+GVT+ D + M++G+S ++T+ ERD ++P++I+GFK A AG +++ LNPW+ +G
Sbjct: 116 MGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLG 175
Query: 123 GVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAM 182
GV T+VC EF+MP+ A PGDV++LTKPLGTQ++V + WL EK + +K V
Sbjct: 176 GVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKL-VVTQED 234
Query: 183 LKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHT 242
++ A+ MA +N+ AA LM +NAHA TD+TG+G+ GHA NL K Q N V+F+IH
Sbjct: 235 VELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHN 294
Query: 243 LPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL------- 295
LP+L + ++ G F + G ETSGGL ICLP + A F E+
Sbjct: 295 LPVLAKMAAVSKACGNMF--GLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ 352
Query: 296 AWIIGKVTPGDRSVIIKDSPDIFHVT 321
AWIIG V G+R+ I D P I V
Sbjct: 353 AWIIGIVEKGNRTARIIDKPRIIEVA 378
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
PDB: 2yye_A* 2zod_A 2zau_A
Length = 345
Score = 224 bits (574), Expect = 8e-72
Identities = 80/326 (24%), Positives = 133/326 (40%), Gaps = 47/326 (14%)
Query: 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVT 66
+ IG D+ + + + + + D P+V P++ GAI+ AN LSD+YA+G
Sbjct: 46 TLVSIGDDAGVYE------HNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGI 99
Query: 67 DIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVT 126
++AL + + +L + I +I G + A + + G V
Sbjct: 100 PVNALAISCFNNCELDIE----IFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVA 155
Query: 127 SVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQC 186
+C +++ + AQ G ++ILTKP+GT + + +E +
Sbjct: 156 GICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKE----------------ED 199
Query: 187 VNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPIL 246
+N AI M +N KA LM +A ACTDVTG+GL GHA N+ K +P
Sbjct: 200 INEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYY 259
Query: 247 -----------YPLGVIASRPGTRFYQNVNRGHGI-------ETSGGLFICLPEDHAKDF 288
YP G I + + Y N + TSGGL + ++ +
Sbjct: 260 QLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKI 319
Query: 289 IKEMNGL---AWIIGKVTPGDRSVII 311
+ L WIIG+ + ++
Sbjct: 320 DETAKELEVNYWIIGETIAENVLEVL 345
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate
synthesis, transferase; 2.25A {Escherichia coli}
Length = 347
Score = 214 bits (546), Expect = 1e-67
Identities = 75/327 (22%), Positives = 123/327 (37%), Gaps = 47/327 (14%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGV 65
LV E D+ + L +G S +I +TDFF P+V +P G IA N +SDI+A+G
Sbjct: 43 LVGNETRDDAAVYDLGNGTS-----VISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGG 97
Query: 66 TDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVV 125
I A+ ++ +L+ + I + EG + AG+ ++ P G V
Sbjct: 98 KPIMAIAILGWPINKLSPE----IAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAV 153
Query: 126 TSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQ 185
T + +E + AQ G + LTKPLG + T + +
Sbjct: 154 TGIVPTERVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPE---------------- 197
Query: 186 CVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPI 245
A +M +N A A TDVTG+GL GH + + + +P
Sbjct: 198 HQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPK 257
Query: 246 L---YPLGVIASRPGTRFYQNVNRGHGI---------------ETSGGLFICLPEDHAKD 287
L + + PG +N + +TSGGL + + + +
Sbjct: 258 LPGVEEYIKLGAVPG-GTERNFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENE 316
Query: 288 FIKEM--NGL-AWIIGKVTPGDRSVII 311
G+ IG++ P +
Sbjct: 317 VKATAAEFGIELTAIGELVPARGGRAM 343
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 110 bits (276), Expect = 7e-28
Identities = 57/328 (17%), Positives = 117/328 (35%), Gaps = 62/328 (18%)
Query: 6 LVRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFY--PLVTHPHIMGAIACANVLSDIYAV 63
+ ++ D IP +++ + D PL +G +A + ++D+ +
Sbjct: 35 GIGLDALDDGATIPFGDK------HIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVM 88
Query: 64 GVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI----SKVAVKLNPWM 119
G I AL + I L + ++ + A V I +KV
Sbjct: 89 GAEPI-ALANSMIIGEGLDMEVLKRVL----KSMDETAREVPVPIVTGDTKVVEDKI--- 140
Query: 120 TIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVD 179
+ + + +E V A+ GD ++++ +G + + S +
Sbjct: 141 EMFVITAGIGIAEHPVSDAGAKVGDAVLVSGTIGDH-GIALMSHREGIA----------- 188
Query: 180 SAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFM 239
+ + S + + + K A + N HA D T GL+ N + ++N V +
Sbjct: 189 ---FETELKSDVAPIWDVVKAVAETIGWENIHAMKDPTRAGLSNAL-NEIARKSN-VGIL 243
Query: 240 IH--TLPILYPLGVIASRPGTRFYQNVNRGHGIE-----TSGGLFICLPEDHAKDFIKEM 292
+ +PI RP R + GI G + + + ++A++ ++ M
Sbjct: 244 VREADIPI---------RPEVR---AASEMLGISPYDVANEGKVVMVVAREYAEEALEAM 291
Query: 293 NGL-----AWIIGKVTPGDR-SVIIKDS 314
A IIG+V R V+++
Sbjct: 292 RKTEKGRNAAIIGEVIADYRGKVLLETG 319
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 65.0 bits (159), Expect = 4e-12
Identities = 61/324 (18%), Positives = 103/324 (31%), Gaps = 58/324 (17%)
Query: 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIM-----GAIACANVLSDIY 61
+ D+ + L L STD P G +A ++D+
Sbjct: 34 PILGTLNDAARLDLTGP-------LAMSTD---SYTVDPIFFPGGDIGTLAVHGTVNDVS 83
Query: 62 AVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI----SKVAVK-LN 116
+G L + L D + +V A AGV I +KV +
Sbjct: 84 MLGARPR-YLSCGFILEEGLDMDILERVV----ASMGKAAREAGVFIVTGDTKVVPRGAC 138
Query: 117 PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSI 176
M I + ++A+PGD I+++ +G +TI L + L+F +
Sbjct: 139 DKMFINTTGIGEILVDPAPSGDRARPGDAILISGSMG-DHGLTI---LSQRQGLNFAADV 194
Query: 177 KVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSV 236
DSA L + V ++++ + H D T GL N + Q+
Sbjct: 195 CSDSASLNRVV-------------EKLVLEVGDIHVLRDPTRGGLAT-TLNEIAGQSQ-A 239
Query: 237 NFMIH--TLPILYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNG 294
+ +P+ + S G N G L LPE+ A+ + +
Sbjct: 240 VCHVLETAVPVRESVRNGCSFLGLDPLYLAN-------EGKLICILPEERAEAALAVLRE 292
Query: 295 L-----AWIIGKVTPGDRSVIIKD 313
A IG V +
Sbjct: 293 GPHGEHAARIGSVKSVGELGAARA 316
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 61.9 bits (151), Expect = 5e-11
Identities = 54/309 (17%), Positives = 97/309 (31%), Gaps = 66/309 (21%)
Query: 30 YLIQSTDFFYPLVTHPHIM-----GAIACANVLSDIYAVGVTDIDALQMIVG--ISTQLT 82
+ +TD P G +A ++D G L + I
Sbjct: 29 NITLTTD---SFTVKPLFFPGGDIGKLAVCGTVNDASMRGAK---PLFLTAAFIIEEGFP 82
Query: 83 EDERDIIVPMLIEGFKAQASVAGVNI----SKVAVKLN-PWMTIGGVVTSVCSSEEFVMP 137
++ IV + A AGV I +KV K + + I V V
Sbjct: 83 VEDLKKIV----KSMAEAAKEAGVKIVAGDTKVVEKGSVDRIFINTSGIGVLYEGANVSI 138
Query: 138 NQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATI 197
A+PGD+++++ +G + + + E+L F I D A L +
Sbjct: 139 KNAKPGDIVLISGTIG-DHGMAV---MSAREELQFDTPIFSDVAPLNGLI---------- 184
Query: 198 NKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIH--TLPILYPLGVIASR 255
++ D T G+ + + V I+ LP+ +
Sbjct: 185 ---EKLMTLGEAIKVLRDPTRGGVAE-VLYEISKMSG-VGIKIYEEKLPV---------K 230
Query: 256 PGTRFYQNVNRGHGIE-----TSGGLFICLPEDHAKDFIKEMNGL-----AWIIGKVTPG 305
+ + GI+ G + + + D+A+ ++ M A IIG+V
Sbjct: 231 ESVK---SACEFMGIDFLHLANEGKVVVVVERDYAEKALEIMKSHEYGKDAEIIGEVNDS 287
Query: 306 DRSVIIKDS 314
V I
Sbjct: 288 KL-VTINTI 295
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 57.3 bits (139), Expect = 1e-09
Identities = 53/337 (15%), Positives = 84/337 (24%), Gaps = 78/337 (23%)
Query: 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFFYPLVTHPHIM-----GAIACANVLSDIY 61
+ D + LA L STD V P G +A +D+
Sbjct: 28 PWLAEQEDQARLDLAQ-LVAEGDRLAFSTD---SYVIDPLFFPGGNIGKLAICGTANDVA 83
Query: 62 AVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNI-----SKVAVKLN 116
G L + L + +V A AG+ I V
Sbjct: 84 VSGAIPR-YLSCGFILEEGLPMETLKAVV----TSMAETARTAGIAIVTGDTKVVQRGAA 138
Query: 117 PWMTIGGVVTSVCSSEEFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSI 176
+ I + GD+++++ LG TI L E+L +
Sbjct: 139 DKLFINTAGMGAIPTNIHWGAQTLTAGDILLVSGTLGD-HGATI---LNLREQLGLDGEL 194
Query: 177 KVDSAMLKQCVNSAITLMATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSV 236
D A+L L A D T G+ +
Sbjct: 195 VSDCAVL--------------TPLIQTLRDIPGVKALRDATRGGVNA-VVHEFAAACG-C 238
Query: 237 NFMIH--TLPI------------LYPLGVIASRPGTRFYQNVNRGHGIETSGGLFICLPE 282
I LP+ L L G L I +
Sbjct: 239 GIEISESALPVKPAVRGVCELLGLDALNFAN-------------------EGKLVIAVER 279
Query: 283 DHAKDFIKEMNGL-----AWIIGKVTPGDRSVIIKDS 314
+ A+ + ++ A +IG+V V +
Sbjct: 280 NAAEQVLAALHSHPLGKDAALIGEVVERKG-VRLAGL 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 6e-08
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 62/195 (31%)
Query: 160 IRSWLKNEEKL---SFLKSIKVDSAM----LKQCVNSAITLMATINKKAAILMKKYNAHA 212
I WL+N +L SI + + + Q + +T K + ++
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTA-----KLLGFTPGELRSYL 267
Query: 213 CTDVTGYGLTGHATNLV------------KYQTNSVNFMIHTLPILYPLGV-------IA 253
G TGH+ LV + + + +L+ +GV
Sbjct: 268 K------GATGHSQGLVTAVAIAETDSWESFFVSVRKA----ITVLFFIGVRCYEAYPNT 317
Query: 254 SRPGTRFYQNVNRGHGIET-----SGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGDRS 308
S P + ++ G+ + S L ++ +D++ + N P +
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISN-----LTQEQVQDYVNKTN-------SHLPAGKQ 365
Query: 309 VII--KDSPDIFHVT 321
V I + V+
Sbjct: 366 VEISLVNGAKNLVVS 380
Score = 44.7 bits (105), Expect = 4e-05
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 56/174 (32%)
Query: 31 LIQSTDFF-------YPLVTHPHIMGAIAC-ANVLSDIYAVGVTDI-DALQMIV---GIS 78
LI + F Y A+A A+V+S I ++ +V G++
Sbjct: 1752 LIPADATFAGHSLGEY---------AALASLADVMS---------IESLVE-VVFYRGMT 1792
Query: 79 TQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCS-SEEFVMP 137
Q RD E ++ + +N +VA + + VV V + V
Sbjct: 1793 MQ-VAVPRD-------ELGRSNYGMIAINPGRVAASFSQ-EALQYVVERVGKRTGWLVEI 1843
Query: 138 ---NQAQPGDVIILTKPLGTQMSV-TIRSWLKNEEKLSFLKSIKVDSAMLKQCV 187
N + G ++ T+ L+F+K K+D L++ +
Sbjct: 1844 VNYN--VENQQYVAA---GDLRALDTV------TNVLNFIKLQKIDIIELQKSL 1886
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 36.8 bits (86), Expect = 0.006
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 29/133 (21%)
Query: 31 LIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDIIV 90
L + F P +G A + +SD+ A G ++ ++ L ED V
Sbjct: 81 LNEGVHFL--RSYIPEAVGWKAISVNVSDVIANGGL---PKWALISLN--LPEDLEVSYV 133
Query: 91 PMLIEGFKAQASVAGVNISKVAVKLNPWMTIGG----------VVTSVCSSEEFVMPNQA 140
G K + +GG V V +E FV + A
Sbjct: 134 ERFYIGVKRACEFYKCEV------------VGGNISKSEKIGISVFLVGETERFVGRDGA 181
Query: 141 QPGDVIILTKPLG 153
+ GD + ++ LG
Sbjct: 182 RLGDSVFVSGTLG 194
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 34.7 bits (80), Expect = 0.034
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 261 YQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGDRSVIIKDSP 315
Y+ N GH +E I + +HA++ I A I+G V D++ +I +S
Sbjct: 332 YKVFNMGHRME------IYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIESE 383
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
flagellatus}
Length = 319
Score = 33.7 bits (78), Expect = 0.074
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 43/165 (26%)
Query: 7 VRIEIGLDSCIIPLASGRSPSPLYLIQSTDFF-----YPLVTHPHIMG--AIACANVLSD 59
+ +G D+ +I + G L S D + P ++G ++A +SD
Sbjct: 20 AVLGVGDDAALIQPSPGM-----ELAVSADMLVANTHFYPNIDPWLIGWKSLAVN--ISD 72
Query: 60 IYAVGVTDIDALQMIVGISTQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVKLNPWM 119
+ A+G + I+ L E + D I GF A A+ + +
Sbjct: 73 MAAMGAQ---PRWATLTIA--LPEADEDWISK-FAAGFFACAAQFDIAL----------- 115
Query: 120 TIGG------VVTSV-----CSSEEFVMPNQAQPGDVIILTKPLG 153
IGG + SV ++ + A+ D I ++ PLG
Sbjct: 116 -IGGDTTRGPLTISVQIMGETPPGASLLRSTARADDDIWVSGPLG 159
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 31.0 bits (71), Expect = 0.54
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 275 GLFICLPEDHAKDFIKEMNGL----AWIIGKVTPGDRSVII 311
G+ I +D + + IGK+T + II
Sbjct: 310 GMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKVEII 350
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 30.4 bits (69), Expect = 0.70
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 265 NRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGDRS--VIIK 312
N GH +E I HA+ I A IIG+V + I
Sbjct: 338 NMGHRLE------IYTDAAHAEGMIAIAKKFNIEAKIIGRVEAPVAGKRLTIT 384
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
{Nicotiana tabacum}
Length = 453
Score = 29.9 bits (67), Expect = 1.2
Identities = 4/40 (10%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 260 FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM-NGLAWI 298
++ + +E + + L + F +G++++
Sbjct: 418 LSKSKDSDGDLE----IGLSLSKTRMNAFAAMFTHGISFL 453
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon
DNA, bipartite DNA-binding, HTH- motif, DNA binding
protein/DNA complex; 2.69A {Caenorhabditis elegans}
SCOP: a.4.1.2 a.4.1.2
Length = 141
Score = 28.9 bits (64), Expect = 1.4
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 10/110 (9%)
Query: 78 STQLTEDERDIIVPMLIEGFKAQASVAGVNISKVAVK--LNPWMTIG-----GVVTSVCS 130
+ L++ ER + M + ++ S+ ++ L ++ G ++
Sbjct: 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSV 63
Query: 131 SEEFVMPNQAQPGDVII--LTKPLGTQMSV-TIRSWLKNEEKLSFLKSIK 177
+E + A + L S TI + +K + K
Sbjct: 64 RDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRP 113
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 29.0 bits (66), Expect = 2.3
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 275 GLFICLPEDHAKDFIKEMNGL---AWIIGKVTP---GDRSVIIK 312
G + + ++ + ++ + AW+IG V G V +K
Sbjct: 276 GAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVARAEGSPRVKVK 319
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 28.6 bits (65), Expect = 2.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 275 GLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGD 306
G+ + + E+ AKD ++ + A IIG+ G
Sbjct: 302 GMVVAVKEEDAKDIVRLLEEQGETARIIGRTVQGA 336
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 28.3 bits (64), Expect = 3.7
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 275 GLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGD 306
GL + + + A ++ ++ A+IIG+V G
Sbjct: 304 GLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGA 338
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
morifolium} PDB: 2e1u_A 2e1t_A
Length = 454
Score = 28.0 bits (62), Expect = 5.4
Identities = 4/34 (11%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 260 FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMN 293
+E + +C+ +DF+ +
Sbjct: 418 INSCKESNEDLE----IGVCISATQMEDFVHIFD 447
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus}
Length = 311
Score = 27.5 bits (62), Expect = 6.9
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 31 LIQSTDFFYPLVTHPHIMG--AIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDI 88
+ P +G +A A SD+ A L +G+ L ED +
Sbjct: 49 FLYREVAL--KGMGPFEVGFRGVA-AT-ASDLLAKMGR---PLGFTLGLF--LPEDLEEG 99
Query: 89 IVPMLIEGFKAQASVAGVNI-----SKVAVKLNPWMTIGGVVTS---VCSSEEFVMPNQA 140
V L+ G A G + ++ + +T+ G + + A
Sbjct: 100 FVLELVRGAAEAAKRLGAFLLGGDTNR---GVEVALTVSGYALAEAPLPRK--------A 148
Query: 141 QPGDVIILTKPLG 153
PGD++ L
Sbjct: 149 LPGDLLYLAGDRW 161
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 27.5 bits (62), Expect = 7.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 259 RFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM 292
Y+ N+GH GG F P D A+D EM
Sbjct: 162 TKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEM 195
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 27.6 bits (62), Expect = 7.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 259 RFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEM 292
R + N G+ G F P D A+D EM
Sbjct: 165 REEEGGNLGYKPGYKQGYFPVAPTDTAQDIRTEM 198
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
PDB: 1cli_A
Length = 349
Score = 27.1 bits (61), Expect = 8.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 275 GLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGD 306
GL I LP+D A + + AW+IG++ +
Sbjct: 306 GLIIALPKDQANAAVALLQAEGETAWVIGEIAAAN 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,981,269
Number of extensions: 303908
Number of successful extensions: 752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 33
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)