RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12424
(324 letters)
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 179
Score = 63.0 bits (152), Expect = 1e-12
Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 27/182 (14%)
Query: 140 AQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATINK 199
A+ GD ++++ +G + + S + + + S + + + K
Sbjct: 6 AKVGDAVLVSGTIGDH-GIALMSHREGIA--------------FETELKSDVAPIWDVVK 50
Query: 200 KAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPGTR 259
A + N HA D T GL+ + + + +PI +
Sbjct: 51 AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEV-------RAA 103
Query: 260 FYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL-----AWIIGKVTPGDRSVIIKDS 314
+ + G + + + ++A++ ++ M A IIG+V R ++ ++
Sbjct: 104 SEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLET 163
Query: 315 PD 316
Sbjct: 164 GI 165
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD
{Aquifex aeolicus [TaxId: 63363]}
Length = 182
Score = 58.9 bits (141), Expect = 4e-11
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 5/177 (2%)
Query: 140 AQPGDVIILTKPLGTQMSVT--IRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITLMATI 197
AQ G ++ILTKP+GT + + LK E+ ++++ + + + S T
Sbjct: 6 AQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDATACTD 65
Query: 198 NKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIASRPG 257
+L +N +++ + + I V
Sbjct: 66 VTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKS 125
Query: 258 TRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGDRSVII 311
+ TSGGL + ++ + + L WIIG+ + ++
Sbjct: 126 NLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL 182
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
aeolicus [TaxId: 63363]}
Length = 152
Score = 57.8 bits (139), Expect = 5e-11
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 30 YLIQSTDFFYPLVTHPHIMGAIACANVLSDIYAVGVTDIDALQMIVGISTQLTEDERDII 89
+ + D P+V P++ GAI+ AN LSD+YA+G ++AL + + +L + I
Sbjct: 52 IWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCFNNCELDIE----I 107
Query: 90 VPMLIEGFKAQASVAGVNISKVAVKLNPWMTIGGVVTSVCSSEEF 134
+I G + A + + G V +C ++
Sbjct: 108 FREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKY 152
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 113
Score = 36.9 bits (85), Expect = 5e-04
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 14 DSCIIPLASGRSPSPLYLIQSTDFF--YPLVTHPHIMGAIACANVLSDIYAVGVTDIDAL 71
D IP +++ + D PL +G +A + ++D+ +G AL
Sbjct: 1 DGATIPFGDK------HIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAE-PIAL 53
Query: 72 QMIVGISTQLTEDERDIIVPMLIEGFK-AQASVAGVNISKVAVKLNPWMTIGGV 124
+ I L + ++ + E + + + V K+ ++ G+
Sbjct: 54 ANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGI 107
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 163
Score = 36.5 bits (83), Expect = 0.002
Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 22/173 (12%)
Query: 134 FVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAITL 193
FV + A+ GD + ++ LG R+ L+ L + + +
Sbjct: 2 FVGRDGARLGDSVFVSGTLGDS-----RAGLEL-----LLMEKEEYEPFELALIQRHLRP 51
Query: 194 MATINKKAAILMKKYNAHACTDVTGYGLTGHATNLVKYQTNSVNFMIHTLPILYPLGVIA 253
A I+ I + +D GL A +L + + + LP+ L +
Sbjct: 52 TARIDYVKHIQKYANASMDISD----GLVADANHLAQRSGVKIEILSEKLPLSNELKMYC 107
Query: 254 SRPGTRFYQNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGLAWIIGKVTPGD 306
+ G + G L P++ F+ IG+V G+
Sbjct: 108 EKYGKNPIEYALFGGE---DYQLLFTHPKERWNPFLD-----MTEIGRVEEGE 152
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide
synthetase (PurM) C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 33.9 bits (77), Expect = 0.014
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 204 LMKKYNAHACTDVTGYGLTGHATNLVKYQTNSV--NFMIHTLPILYPLGVIASRPGTRFY 261
L++K + HA +TG G + ++ T +V + L + Y
Sbjct: 66 LIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMY 125
Query: 262 QNVNRGHGIETSGGLFICLPEDHAKDFIKEMNGL---AWIIGKVTPGD--RSVIIK 312
+ N G G+ I LP + +N AW IG + D + V+I+
Sbjct: 126 RTFNCGVGMI------IALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVIE 175
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 28.2 bits (62), Expect = 1.4
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 117 PWMTIGGVVTSVCSSEEF-VMPN-QAQPGDVIILTKP 151
+ G + + + + ++P D++I T P
Sbjct: 8 DLKLVHGYPMTCAFASNWEKIEQFHSRPDDIVIATYP 44
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 26.7 bits (59), Expect = 1.5
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 81 LTEDERDIIVPMLIEGFKAQASVAGVNISKVAVK 114
LT+ + + I + + +S+ AV
Sbjct: 17 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVY 50
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of
HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 26.0 bits (57), Expect = 6.1
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 68 IDALQMIVGISTQLTEDERDIIVPMLI-EGFKAQASVAGVNISKVAVKLNPWMTIGGVVT 126
I + + VG++ L DE++ VPM EG VA N A+ L GG +
Sbjct: 70 IGYMPIPVGVAGPLCLDEKEFQVPMATTEG----CLVASTNRGCRAIGLG-----GGASS 120
Query: 127 SVCSSEEFVMPNQAQPGDVI 146
V + + V P V+
Sbjct: 121 RVLADKSVVC-EAVIPAKVV 139
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 26.1 bits (57), Expect = 6.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 164 LKNEEKLSFLKSIKVDSAMLKQCVNSA 190
L +EEK+ FL+ + ++ L + + +
Sbjct: 247 LDDEEKVEFLQDLGIEEPGLNRVIRAG 273
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 25.7 bits (56), Expect = 6.3
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 159 TIRSWLKNEEKLSFLKSIKVDSAMLKQCVNSAIT-LMATINKKAAILMKKYNAHA 212
T ++ L+ ++SF S + + + A+ L A I + K++N+
Sbjct: 13 TAKAMLRER-QMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 66
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 25.9 bits (56), Expect = 6.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 117 PWMTIGGVVTSVCSSEEF-VMPN-QAQPGDVIILTKP 151
P + GV +E + + QA+P D++I T P
Sbjct: 4 PLEYVKGVPLIKYFAEALGPLQSFQARPDDLLISTYP 40
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.4 bits (55), Expect = 7.2
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 133 EFVMPNQAQPGDVIILTKPLGTQMSVTIRSWLKNEEKLSFLKS 175
E ++ + ++ L LG + R L+ +KS
Sbjct: 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,199,956
Number of extensions: 54470
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 13
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)