BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12425
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 142/287 (49%), Gaps = 5/287 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD--KGE 404
+ LII SV DA Y RA N+GG S A L + K ++P +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 463
V +KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
+N G+D V++ ++D PDPP+ V D+ DS+ L W P DGGS ITNYIVEK
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT 240
Query: 524 PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
W+RVG R T + L Y+FRV AEN +G S PS S+
Sbjct: 241 TAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D P PP V+ V D VNL+W +P DGGS+I Y ++K ++ W RV A +
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA--RET 254
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + NL Y+FRV A+N+ GLS PS S
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
VS++++ + L W P DGG K+T+Y+VE+ + W+ + +T + V L
Sbjct: 207 VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVG-QARETRYTVINLFGKT 265
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAK 184
Y F V+A N+ G+ P E P K
Sbjct: 266 SYQFRVIAENKFGLSKPSEPSEPTITK 292
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 17/244 (6%)
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 366
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
A N+ G+ EL + P PPR + + + KIT Y
Sbjct: 180 AKNRFGIDQKTVELDVADVPD---PPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236
Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
+ + + R T+ + + +RV+AEN G+ +P P
Sbjct: 237 KCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGL----------SKPSEPS 286
Query: 487 FPTV 490
PT+
Sbjct: 287 EPTI 290
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
V E+TK + TL W+PP DGG K+ +Y+VE+R+ + + ++T CH T++ V L EG
Sbjct: 14 VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGC 73
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
Y F V+A NE G+G P E +KA ++P PPG + V + V+LSW+KP DG
Sbjct: 74 SYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
GSRI GY ++ GSD W A ++ I LI+G +Y FRV AQNE G+S P
Sbjct: 131 GSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQ 188
Query: 278 ASNSVQIKD 286
S V KD
Sbjct: 189 LSVPVIAKD 197
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 459 YRVVAENDLGMD---SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
+RV+AEN+ G+ ++ S+RP PP T+ D+ +S++L W P DGGS I
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
YIVE + W + T ITGL G +Y FRV A+N G SDP S
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLS 190
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTT 538
D P PPQ V+++ S+ L W P+ DGGS I NYIVEKRE ++ V N T+
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 572
+ L G Y FRV AEN YG P+ T++ +
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESV 97
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D P PP V +V V L+WD PL DGGS+I+ Y ++K E A+ V C +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKT 62
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
+ L EG Y FRV A+NE G+ LP+ + SV+ +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 5/197 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGE 404
+ LII SV DA Y RA N+GG S A L + K ++P + +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 463
V +KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISD 480
+N G+D V++ ++D
Sbjct: 181 KNRFGIDQKTVELDVAD 197
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 366
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 367 AVNKGGVKSTKAEL 380
A N+ G+ EL
Sbjct: 180 AKNRFGIDQKTVEL 193
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYT 349
AP LRN N NA C +TG PKP + W + +EI + E G +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGENVV 407
LII SV DA Y RA N+GG S A L + K ++P + +GE V
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAEND 466
+KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A+N
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 467 LGMDSAIVKIQISD 480
G+D V++ ++D
Sbjct: 182 FGIDQKTVELDVAD 195
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 117
Query: 308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 366
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 118 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 177
Query: 367 AVNKGGVKSTKAEL 380
A N+ G+ EL
Sbjct: 178 AKNRFGIDQKTVEL 191
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 347
M+ +AP I +++ AQ C I G P P I W + +E+ S ++ + ++G T
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
+TL + + D Y C A N+ G T ++L++ P+F+ ++ Y G +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAEND 466
+ + + G P P +TW+ +++++ + +E +E + L +++ Y+V N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 467 LGMDSAIVKIQISDR 481
G AI+ ++I D+
Sbjct: 183 FGTVDAILDVEIQDK 197
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
GE + G P P I WYR + + + + + R LT+ D Y +
Sbjct: 22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI 81
Query: 463 AENDLGMDSAIVKIQISDRPD-PPQFPTVED---------------IGHDSLALVW--RA 504
A N++G K+ + P P +P E IG A+ W
Sbjct: 82 ATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQ 141
Query: 505 PIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLS-PGHQYEFRVYAENVYGRS 563
+ NIT +E EH +T + + + H +++V NV+G
Sbjct: 142 KLLQNSENIT---IENTEH------------YTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 564 D 564
D
Sbjct: 187 D 187
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
P+PP+FP +E+I +++ L W+ P DGGS +TNY +EKRE SW +R+T I
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 542 TGLSPGHQYEFRVYAENVYGRSDP 565
GL G QYEFR+ AEN +G+S P
Sbjct: 70 EGLRAGKQYEFRIIAENKHGQSKP 93
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+P PP P++ + + V LSW P DGGS + Y I+K E +W + CA S+
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW-----SPCAKSR 63
Query: 249 ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
I L G+QYEFR+ A+N+ G S P + V I
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
+ I L W PP DGG VT+Y +E+R+ W + + + T I +GL G+
Sbjct: 18 IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI-EGLRAGK 76
Query: 158 EYLFHVMAVNENGMGPPLEGINPI 181
+Y F ++A N++G P E P+
Sbjct: 77 QYEFRIIAENKHGQSKPCEPTAPV 100
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
N V G D EY RA N G TK E++ +
Sbjct: 543 NRVKGDDKGEYTVRAKNSYG---TKEEIVFL 570
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 21/290 (7%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
A + P I PL + A QC + G P+ I+W K ++ + + + + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR---DTAYFDKGEN 405
+L+IN V D EY C+A N G ++ A L+I + +PP F + G
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK---ERKLPPSFARKLKDVHETLGFP 118
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
V + G +++WY+D E+++ + A L I Y A N
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 466 DLGMDSAIVKIQISDRPDPPQF---PTVEDI-----GHDSLALVWRAPIWDGGSNITNYI 517
LG S+ K+ +S+ PP F P D+ G + API IT +
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-----KIT-WA 232
Query: 518 VEKRE-HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
+ RE P ++ T+ + ++ G ++ YA NV G+ S
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI-QN 307
+ + + +G ++ YA N AG S S + +++P P I L + + Q+
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVKQD 306
Query: 308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 367
+ +++C I G P+ + W K EI S++ + L + ++ D+ +Y C A
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 367 HNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKDKR 423
Query: 428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
+ SG + + + + I + + D Y+ A ND+G D+ + I + PP+F
Sbjct: 424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK---APPRF 480
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
F+C +TG I+W K +REI P + + +T TL + V DA +Y C A N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
G S A+L + P+F + + + E+ + G P+ K+ WY+D I+
Sbjct: 277 GKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 387
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 90/230 (39%), Gaps = 14/230 (6%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
E+ A+N G S+ + K P P L++ + F+C I G
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKLP-----PSFARKLKDVHETLGFPVAFECRINGSE 129
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
+SW K + A + TL I +Y C A N G S+ A+L
Sbjct: 130 PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 381 IIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
+ P F++ P D A GE+ K TG KITW +DN I GG++ +
Sbjct: 190 TLSEHEVPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
E A LT+ + D Y A N G DS ++ + +PP+F
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---EPPRF 293
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 10/193 (5%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
P+ K P + L+ A+ +C + G P +SW K RE+ ++ I +E
Sbjct: 385 PVFRKKPHPVETLKGADV------HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
++ I +V D EY C+A N G + + + P+F + D + GE V
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF--VKKLSDISTV-VGEEV 495
Query: 407 VVKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
++ G + W++D E++ + + SE A L A + Y +N
Sbjct: 496 QLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555
Query: 466 DLGMDSAIVKIQI 478
+ G + +
Sbjct: 556 EAGTQECFATLSV 568
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 344
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 401
G L I +V ++ Y +A N G ++ AEL++ PP F +
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+G V +++ TG P P + +YRD I+S F + L I +A D+ Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 462 VAENDLGMDSAIVKIQI 478
A N +G ++ ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 367 AVNKGGVKSTKAELII 382
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
AP F P + + +G + +G+P P+++W+RD +VI + + S+
Sbjct: 5 APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
A LTI + ++ Y + A N G ++ ++ + PP F
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
F+C +TG I+W K +REI P + + +T TL + V DA +Y C A N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
G S A+L + P+F + + + E+ + G P+ K+ WY+D I+
Sbjct: 85 GKDSCSAQLGVQAPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 12/233 (5%)
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 305
+ + + + +G ++ YA N AG S S + ++ P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQAP-----PRFIKKLEPSRIVK 112
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
A N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKD 229
Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ SG + + + + I + + D Y+ A ND+G + + I +
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
M P F++ P D A GE+ K TG KITW +DN I GG++ + E
Sbjct: 3 MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
A LT+ + D Y A N G DS ++ + PP+F
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---APPRF 101
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
F+C +TG I+W K +REI P + + +T TL + V DA +Y C A N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
G S A+L + P+F + + + E+ + G P+ K+ WY+D I+
Sbjct: 85 GKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 12/233 (5%)
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 305
+ + + + +G ++ YA N AG S S + +++P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVK 112
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
A N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKD 229
Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ SG + + + + I + + D Y+ A ND+G + + I +
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
M P F++ P D A GE+ K TG KITW +DN I GG++ + E
Sbjct: 3 MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
A LT+ + D Y A N G DS ++ + +PP+F
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---EPPRF 101
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 344
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 401
G L I +V ++ Y +A N G ++ AEL++ PP F +
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+G V +++ TG P P + +YRD I+S F + L I +A D+ Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 462 VAENDLGMDSAIVKIQI 478
A N +G ++ ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 367 AVNKGGVKSTKAELII 382
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
AP F P + + +G + +G+P P+++W+RD +VI + + S+
Sbjct: 5 APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
A LTI + ++ Y + A N G ++ ++ + PP F
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 348
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 407
+L I V D+ Y C A ++ G L I APKF T Y+ +G +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 465
+ P I W RD V+ + +++T + R IL I S+ D Y A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
+G + ++D P P + ++ + + + P GG I +Y V+ +E
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 526 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 566
W V + TM + L P YE RV A N G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 100 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 159
E+++ T + +N P GG+ + HY V+ ++++ W + + T ++ L Y
Sbjct: 206 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTY 265
Query: 160 LFHVMAVNENGMG--PPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
V AVN G G +E I P +PSPP I G F LS K DDG
Sbjct: 266 EIRVAAVNGKGQGDYSKIE----IFQTLPVREPSPPSIHGQPSSGKSF-KLSITKQ-DDG 319
Query: 218 GSRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
G+ I Y + + + D W V I + +L YE ++ A N G S P+
Sbjct: 320 GAPILEYIVKYRSKDKEDQWLEKKVQ-GNKDHIILEHLQWTMGYEVQITAANRLGYSEPT 378
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 252
Query: 248 QINIPNLIEGRQYEFRVYAQNEAG 271
+ + NL YE RV A N G
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKG 276
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 348
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 407
+L I V D+ Y C A ++ G L I APKF T Y+ +G +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 465
+ P I W RD V+ + +++T + R IL I S+ D Y A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
+G + ++D P P + ++ + + + P GG I +Y V+ +E
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 526 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 566
W V + TM + L P YE RV A N G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 100 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 159
E+++ T + +N P GG+ + HY V+ ++++ W + + T ++ L Y
Sbjct: 206 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTY 265
Query: 160 LFHVMAVNENGMG 172
V AVN G G
Sbjct: 266 EIRVAAVNGKGQG 278
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 252
Query: 248 QINIPNLIEGRQYEFRVYAQNEAG 271
+ + NL YE RV A N G
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKG 276
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 9/228 (3%)
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
V + + I L G +R A+N A + A + + DP + +
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI-LSDPGLHRQLYFLQRPS 229
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
N AI+ +A +C ++G P P+ +WL+G I ++ + G L+I++V D+
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDS 287
Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
Y C K S AEL ++ P F P Y + ++ + +G P P +
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHP---SNLYAYESMDIEFECAVSGKPVPTV 344
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
W ++ +V+ +F + IL + + D Y+ VAEN+ G
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAENEAG 389
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 10/165 (6%)
Query: 273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE 332
SL S S + M A + + A +C + G P PTI W K ++
Sbjct: 102 SLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD 161
Query: 333 ITP---SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAELIIMTAPKF 388
+ P +R + G L I+ + D+ Y C A N ++ +AE+ I++ P
Sbjct: 162 LNPIPGDSRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL 218
Query: 389 NVPPRFRD---TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE 430
+ F +G++ V++ +GYP P TW R EVI+
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ 263
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
N A ++ + +F+C ++G P PT++W+K + PS I + L I V D
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRILGVVKSDE 377
Query: 361 DEYVCRAVNKGGVKSTKAELII 382
Y C A N+ G + A+LI+
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 11/191 (5%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYT 349
KAP I PL +A+ A F C + P+P ISW + I R+ I G T
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 350 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
++ SV D Y C A N GG + L + PK PP +G V+
Sbjct: 66 IL--SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP---INVKIIEGLKAVL 120
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
G PKP ++W + + + V S L I + D YR VA+N LG
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 469 MD-SAIVKIQI 478
S +VK+++
Sbjct: 178 TAYSKLVKLEV 188
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A N G ++ S + V++K P+I P N I+ A CT G PKP++S
Sbjct: 81 ANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377
W+KG + ++R + G +L I++V DA +Y C A N G +K
Sbjct: 134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-G 532
+ IQI DRP PPQ +ED+ +++AL W P DG + IT Y ++K + W V
Sbjct: 10 IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE 69
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ T+ IT L G++Y FRV++EN+ G S+ +T +
Sbjct: 70 HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMT 106
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D+P PP I + V G+ V L+W P DDG + I GY I K + S W V + +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTV-IEHYHRT 74
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLS 273
I L+ G +Y FRV+++N GLS
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLS 100
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
+ ++ L W PPK DG +T Y +++ D W + H T+ + L G
Sbjct: 26 IEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGN 85
Query: 158 EYLFHVMAVNENGM 171
EY F V + N G+
Sbjct: 86 EYYFRVFSENMCGL 99
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS-TTCHDTTFIVQGLTEGQEY 159
IT+HT TL W P+Y GG K+T Y+VE+RD+ W+ + + + F V GLTE Y
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAY 81
Query: 160 LFHVMAVNENG-MGPPLEGINPIKAK 184
F V+A N G + PP E + I +
Sbjct: 82 EFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMA 540
DPP P +I ++ L W P + GG IT+YIVEKR+ P W++ N
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 541 ITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLIT 573
++GL+ YEFRV A+N G S PS SD IT
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
SP D PPG PV + V L W KP GG +I Y ++K ++ + W + N +
Sbjct: 9 SPID---PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 290
++ + L E YEFRV A+N AG +S PS S+++ +D + A
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 293 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
P I +P + NA A + F C +G P+P ISW + + I + ++ +G L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTEL 60
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
+ ++ D YVCRA NK G +A L + P + ++ ++ G+ V +
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI---IQLKNETTYENGQ-VTLVC 116
Query: 411 PFTGYPKPKITWYR--DNEVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVA 463
G P P+ITW R D G G V+ + L I+D D+ Y A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 464 ENDLG 468
+ +G
Sbjct: 177 ASRIG 181
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 384 TAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
+ P ++P + F TA ++GE + +G P+P I+W+R+ ++IE + ++ S
Sbjct: 1 SMPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVW 502
LT+R+ N D PY A N G D +Q+ +P Q + + LV
Sbjct: 59 E--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC 116
Query: 503 RA 504
A
Sbjct: 117 DA 118
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
Q +A+ C ++ P P +SWL + E+T + + FA L I ++ D Y C
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 74
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 422
R +G + +I+ P ++P + F TA ++GE + +G P+P I+W
Sbjct: 75 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 132
Query: 423 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+R+ ++IE + ++ S LT+R+ N D PY A N G D +Q+
Sbjct: 133 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 293 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 154
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+ ++ D YVCRA NK G +A L +
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
Q +A+ C ++ P P +SWL + E+T + + FA L I ++ D Y C
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 170
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 422
R +G + +I+ P ++P + F TA ++GE + +G P+P I+W
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 228
Query: 423 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+R+ ++IE + ++ S LT+R+ N D PY A N G D +Q+
Sbjct: 229 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 293 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 250
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+ ++ D YVCRA NK G +A L +
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 312 FQCTITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
F CT G P+ +I W E I + R + EG L I + DA Y C+A +
Sbjct: 24 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNE 427
G ++ +A +++ K FR+ F +GE+ V + P P ++W NE
Sbjct: 83 KG-QTQEATVVLEIYQKLT----FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 428 VI 429
+
Sbjct: 138 EV 139
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 344
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 8 PVFVKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 60
Query: 345 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 395
G L I + V DE Y C A N G +T A+L ++ P ++ P+ +
Sbjct: 61 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK 119
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
+KG + G P P+I+W++D ++ R L I + D
Sbjct: 120 ---VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESD 176
Query: 456 TAPYRVVAENDLG 468
Y VA N G
Sbjct: 177 QGKYECVATNSAG 189
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 225 WIDK-HEVGSDAWQRVNVAICAPSQINI-PNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
W+ K +V S ++ + A S + I P ++ + + A N G + +SA SV
Sbjct: 41 WMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSV 99
Query: 283 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF 342
+D + + P I + + + A C G P P ISW K + P+A +
Sbjct: 100 LEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRI 159
Query: 343 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374
+ + L I S D +Y C A N G +
Sbjct: 160 KQLRSGALQIESSEESDQGKYECVATNSAGTR 191
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 106/275 (38%), Gaps = 35/275 (12%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARH----HIFAEGDTYT-LIINSVYGVDADEYVCR 366
+C G P P ISW ++I + R+ ++ GD + L I SV+ D Y C
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
A +K GV A+L + P R + GE ++V P GYP I W RDN
Sbjct: 509 AKSKVGVAEHSAKLNVYGLPYI----RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 427 EVIE--------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD---SAIVK 475
+ G +E ER N D A Y VA+N G S V+
Sbjct: 565 RALPINRKQKVFPNGTLIIENVER----------NSDQATYTCVAKNQEGYSARGSLEVQ 614
Query: 476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR---EHPMSSWIRVG 532
+ + R P F L L P D NI ++ ++ + E + RVG
Sbjct: 615 VMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI-DWTLDGQAISEDLGITTSRVG 673
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567
R + + I + H F +A N+ G +T
Sbjct: 674 R-RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTT 707
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 23/217 (10%)
Query: 276 SSASNSVQIKDPMAAKAPEII--VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
S+ + I +P+++ P+++ + C G P P W K I
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKF---I 286
Query: 334 TPSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTI 448
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 347 KIDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRI 393
Query: 449 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
D Y+ ND A ++++ R DPP
Sbjct: 394 ESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPP 430
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
A F C TG P T+SW+K + I S L I SV D Y C N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRN 410
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDN 426
AEL + +F+ PP R + G +V +K G P P+I+W D
Sbjct: 411 DRESAEASAELKL--GGRFD-PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG 467
Query: 427 EVIESGGHFHVE-----TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
+ I + + V + + L I D Y+ +A++ +G+ K+ +
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Query: 482 P 482
P
Sbjct: 528 P 528
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 81/218 (37%), Gaps = 31/218 (14%)
Query: 221 IQGYWIDKHEVGSDAWQRVNVAI-CAPSQINIPN---LIE-----GRQYEFRVYAQNEAG 271
+ GY ID S W+R N A+ Q PN +IE Q + A+N+ G
Sbjct: 550 VAGYPID-----SIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Query: 272 LSLPSSASNSVQIKDPMAAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKP-TISWLKG 329
S S V + P II A C++ G P I W
Sbjct: 605 YSARGSLEVQVMV-------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 330 SREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
+ I+ + G T I +V A + C A N G + L + P
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLT--IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Query: 387 KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
++ + P D A F +G + V+ G+PKP++TW +
Sbjct: 716 RWILEPT--DKA-FAQGSDAKVECKADGFPKPQVTWKK 750
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 380
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 381 IIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
+ AP+F++ P + G NV + G P P + W + E + V
Sbjct: 198 YVRVQNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV 254
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
+ +L + D D+A Y VA + LG+ A+ +I + P
Sbjct: 255 GRN----VLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLP 293
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 352 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 403
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 464 ENDLGM 469
N G+
Sbjct: 184 TNSAGV 189
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNH 308
+ I + E Q ++ A N AG+ S A+ V++++ AP + + +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMPGG 221
Query: 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
N C G P P + W++G+ ++TP + L + V D+ Y C A+
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAM 275
Query: 369 NKGGVKSTKAELIIMTAPK 387
+ GV A++ + + PK
Sbjct: 276 SSLGVIEAVAQITVKSLPK 294
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
AA PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 64
Query: 347 TYTLIINSVY-GVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 400
L I V G D Y C A N G S A L I K F V + T
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
+ G V++ G P P I W ++ ++ + S + L I ++ D Y
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 181
Query: 461 VVAENDLGMD-SAIVKIQISDRPDPPQF 487
VAEN +G + S + + R PP F
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVPPTF 209
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 344
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 7 PVFIKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 59
Query: 345 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 395
G L I + V DE Y C A N G +T A+L ++ P ++ P+ +
Sbjct: 60 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK 118
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
+K + G P P+I+W++D ++ R L I + D
Sbjct: 119 ---VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESD 175
Query: 456 TAPYRVVAENDLG 468
Y VA N G
Sbjct: 176 QGKYECVATNSAG 188
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%)
Query: 308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 367
A C G P P ISW K + P+ + + + L I S D +Y C A
Sbjct: 124 RTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVA 183
Query: 368 VNKGGVK 374
N G +
Sbjct: 184 TNSAGTR 190
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
N V G D EY RA N G TK E++ + + + P +F
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF 475
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 418 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
P +TW++D+ ++ + + LTI D Y V A+N G IV +
Sbjct: 406 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 465
Query: 478 ISDRPDPPQFPTVE 491
++ +P +F +E
Sbjct: 466 VTRHSEPLKFEPLE 479
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
+ +A C + PTI W R++ + Y L I + D Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-----TAYFDKGENVVVKIPFTGYPKP 418
R + +G + ++I+ NVPP + A + G++V + G+P+P
Sbjct: 173 EGRILARGEINFKDIQVIV------NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 419 KITWYRDNEVIESGGHFHVETSERHAI------LTIRDASNVDTAPYRVVAENDLGMDSA 472
++W +D E IE+ E E+H LTIR+ D A Y +AEN G A
Sbjct: 227 TMSWTKDGEPIEN----EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 282
Query: 473 IVKIQI 478
+ +++
Sbjct: 283 SIHLKV 288
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFA 343
P +A + IV NA A + C G P+PT+SW K I HIF+
Sbjct: 194 PPTVQARQSIV---NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+ D+ L I +V D EYVC A NK G + L +
Sbjct: 251 D-DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 287 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 343
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 344 EGDTYTLIINSVYGV---DADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 398
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 399 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
KGE +++ P G P+P + W +D ++ S R I L I +
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 453 NVDTAPYRVVAENDLG 468
+D Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 287 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 343
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 344 EGDTYTLIINSVYGV---DADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 398
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 399 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
KGE +++ P G P+P + W +D ++ S R I L I +
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 453 NVDTAPYRVVAENDLG 468
+D Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 11/190 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
A PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 347 TYTLIINSVY-GVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 400
L I V G D Y C A N G S A L I K F V + T
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
+ G V++ G P P I W ++ ++ + S + L I ++ D Y
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 179
Query: 461 VVAENDLGMD 470
VAEN +G +
Sbjct: 180 CVAENSMGTE 189
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
I PK +P R T GE + + +PF G P+P++ W + +++ HV TS+
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
+ +R A+ D+ Y + + + D+A ++I++ ++
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 389 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 443
+PP+ D+G+ + V FTG P P++TW I S G FH+E ++
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I D D Y + N+ G DSA V I I
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDYIIIFIKEI 58
+P+ + I EG V + G+ EV+ + GR + S ++ +F + DD + I ++
Sbjct: 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV 70
Query: 59 RKEDAGDY 66
+K+D G Y
Sbjct: 71 QKQDGGLY 78
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 314 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 27 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
Query: 372 GVKSTKAELII 382
G S + I
Sbjct: 87 GSDSATVNIHI 97
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 389 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 443
+PP+ D+G+ + V FTG P P++TW I S G FH+E ++
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I D D Y + N+ G DSA V I I
Sbjct: 65 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDYIIIFIKEI 58
+P+ + I EG V + G+ EV+ + GR + S ++ +F + DD + I ++
Sbjct: 13 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV 72
Query: 59 RKEDAGDY 66
+K+D G Y
Sbjct: 73 QKQDGGLY 80
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 314 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 29 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 88
Query: 372 GVKSTKAELII 382
G S + I
Sbjct: 89 GSDSATVNIHI 99
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-SWIRVGNTRF 536
+SD P PP P V D+ +S+ L W+ P G + YI+E +S SW V N
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70
Query: 537 TTM-AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
TT+ + GL P Y F V A N G SDPS SD + T
Sbjct: 71 TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTFIVQGLTEG 156
V+++TK++ TL W P G L + Y++E S+ + W ++ T + V+GL
Sbjct: 24 VTDVTKNSVTLSWQP-GTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPN 82
Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAK 184
YLF V A+N G+ P +P++ +
Sbjct: 83 TIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG-SDAWQRVNVAICAP 246
D P PP P VT V + V LSW +P G Y I+ S++WQ V +
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT- 71
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
+ + L Y F V A N GLS PS S+ V+ +D
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 352 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 403
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 464 ENDLGM 469
N G+
Sbjct: 184 TNSAGV 189
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 380
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 381 II 382
+
Sbjct: 198 YV 199
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 352 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 403
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 464 ENDLGM 469
N G+
Sbjct: 184 TNSAGV 189
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 380
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 381 II 382
+
Sbjct: 198 YV 199
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 96 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 152
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 153 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Query: 469 M 469
+
Sbjct: 210 L 210
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 309 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 355
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 192
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
DA EY C A N G+ A L ++ A
Sbjct: 193 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 222
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 95 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 469 M 469
+
Sbjct: 209 L 209
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 309 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 355
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
A+ +C G P P I W K ++P AE TL I SV D Y
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP---QWTTAEP---TLQIPSVSFEDEGTY 271
Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
C A N G + + +I+ P++ + D G N+ G P+P + W
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQPEWL---KVISDTEADIGSNLRWGCAAAGKPRPTVRWL 328
Query: 424 RDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
R+ E + S V + L S D+ Y+ VAEN G A ++ +
Sbjct: 329 RNGEPLASQNRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 236 WQRVNVAIC-----APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
W++V+ ++ A + IP++ + + A+N G ++VQ + + A
Sbjct: 240 WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKG-------RDTVQGRIIVQA 292
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
+ PE + + + A N ++ C G P+PT+ WL+ + R + A GD L
Sbjct: 293 Q-PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GD---L 347
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ + D+ Y C A NK G AEL +
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 92/248 (37%), Gaps = 41/248 (16%)
Query: 333 ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN-----------KGGVKSTKAELI 381
I RH F T L I D Y C A + K + AE
Sbjct: 144 IPTDGRH--FVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDT 201
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
+ AP ++ RF Y G+ V ++ G P P+I W + + G + +
Sbjct: 202 RLFAP--SIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVD------GSLSPQWTT 253
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF--PTVEDIGHDSLA 499
L I S D Y AEN G D+ +I + +P+ + T DIG +
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSN--- 310
Query: 500 LVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTMAI--TGLSPGHQYEFR 553
L W ++ + P++S RV G+ RF+ +++ +G+ ++
Sbjct: 311 LRWGCAAAGKPRPTVRWL--RNGEPLASQNRVEVLAGDLRFSKLSLEDSGM-------YQ 361
Query: 554 VYAENVYG 561
AEN +G
Sbjct: 362 CVAENKHG 369
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
P AS+ Q P + P P+R + A+ +C + G P P + W KG +++
Sbjct: 2 PMKASSGDQGSPPCFLRFPR---PVR---VVSGAEAELKCVVLGEPPPVVVWEKGGQQLA 55
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
S R A+G + L++ + DA YVCRA N G A + ++ P
Sbjct: 56 ASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
P + + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 424
+N V++ A L + K +V P F T +G GYP P++ W++
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 425 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLG 468
D+ ++ HF ++ E + LTI + D A Y A N LG
Sbjct: 78 DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C +G P PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 95 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 469 M 469
+
Sbjct: 209 L 209
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 309 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 355
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYG-VDADEYVCRA 367
A F C TG PKP ++W K +++ I F E L I + D + Y C A
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 368 VNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
N G + A+L ++ P ++ P+ + ++ + +G P P+I
Sbjct: 84 QNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK---VVERTRTATMLCAASGNPDPEI 140
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
TW++D ++ R L I + D Y VA N G+
Sbjct: 141 TWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGV 189
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
+ A C +G P P I+W K + PS + + + L I S D +Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 366 RAVNKGGVK-STKAELIIMTAPK 387
A N GV+ S+ A L + K
Sbjct: 182 VASNSAGVRYSSPANLYVRVGTK 204
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
P + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 424
+N V++ A L + K +V P F T +G GYP P++ W++
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 425 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLG 468
D+ ++ HF ++ E + LTI + D A Y A N LG
Sbjct: 78 DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 360 ADEYVCRAVNKGGVKSTKAELIIMTAP 386
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 17/172 (9%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHI--FAEGDTYTLIINSVYG-VDADEYVCR 366
A F C TG P+P I W K ++++ + R + F +G L I + D Y C
Sbjct: 24 ASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82
Query: 367 AVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
A N G S L ++ P ++ P+ + ++ + +G P P+
Sbjct: 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK---VVERTRTATMLCAASGNPDPE 139
Query: 420 ITWYRDNEVIESG---GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
ITW++D +++ G SE L I + D Y VA N G
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 360 ADEYVCRAVNKGGVKSTKAELIIMTAP 386
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
GE+V + TG TW + + I+ H VE SE + LTI A Y ++
Sbjct: 22 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLL 81
Query: 463 AENDLGMDSAIVKIQISDRPDPP 485
EN LG A V + + D+PDPP
Sbjct: 82 VENKLGSRQAQVNLTVVDKPDPP 104
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 14/199 (7%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TS 440
M APK P Y +G V + YP I+W+RD +++ S + +++ +
Sbjct: 17 MYAPKLQGPV----AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT 72
Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
+ L + S D Y A N +G +S + +D P P VE + S A
Sbjct: 73 PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEP--YSSTAQ 130
Query: 501 V-WRAPIWDGGSNITNYIVEKR----EHPMSSWIRVGNTRFT-TMAITGLSPGHQYEFRV 554
V + P GG I Y E R E S W + I GL P Y R+
Sbjct: 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 555 YAENVYGRSDPSTTSDLIT 573
A N G + S S+ T
Sbjct: 191 AALNGKGLGEISAASEFKT 209
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 17/187 (9%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARH---HIFAEGDTYTLIINSVYGVDADE 362
+ + C + P TISW + ++ PS+ + I+ L + D
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDG-QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 363 YVCRAVNKGGVKSTKAELIIMTA-----PKFNVPPRFRDTA--YFDKGENVVVKIPFTGY 415
Y C AVN+ G +S E I++ A P + + TA FD+ E +P Y
Sbjct: 91 YNCTAVNRIGQESL--EFILVQADTPSSPSIDQVEPYSSTAQVQFDEPE-ATGGVPILKY 147
Query: 416 PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475
K W E + + + + I+TI T R+ A N G+
Sbjct: 148 ---KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Query: 476 IQISDRP 482
+ +P
Sbjct: 205 SEFKTQP 211
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVN 369
+ C ++G P P +SW + + P + H + E ++LII V DA Y C A N
Sbjct: 28 RMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87
Query: 370 KGGVKSTKAELII 382
+ G S EL++
Sbjct: 88 RAGQNSFSLELVV 100
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 257
Query: 335 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 258 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 317
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 449
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 318 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 364
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
D Y+ ND A ++++
Sbjct: 365 SVKKEDKGMYQCFVRNDRESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 251
Query: 335 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 311
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 449
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 312 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 358
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
D Y+ ND A ++++
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
A I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I+SV D Y N G + + L I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+GE+ G P P +TW R +V+ + V T++ + I D Y V
Sbjct: 28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
Query: 462 VAENDLGMDSAIVKIQI 478
V EN G A + I
Sbjct: 88 VVENSEGKQEAEFTLTI 104
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 288 MAAKAPEIIVPLRNANA---IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE 344
+A + P + P A++ ++ + +C +G P P I+W K ++ PS + E
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKF--E 271
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
L I +V D+ EY C A NK G + + AP + P+ GE
Sbjct: 272 NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPK---NLILAPGE 328
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESG 432
+ + G PKP + W + E ++S
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 29/237 (12%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI---QNHNAQFQCTIT 317
E++ +A+N+ G +L SN ++++ +K+P + P N + + + QC
Sbjct: 91 EYQCFARNKFGTAL----SNRIRLQ---VSKSP--LWPKENLDPVVVQEGAPLTLQCNPP 141
Query: 318 -GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRA-------- 367
G P P I W+ S E P + ++G L ++V D +Y C A
Sbjct: 142 PGLPSPVIFWMSSSME--PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTI 199
Query: 368 --VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
N +K + P F P + +G +++++ +G P P I WY+
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
+ S + + L I + S D+ Y +A N +G + +++ P
Sbjct: 260 GGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD----EYV 364
N +C G P P+ W + SR + + + TL+I+ G + EY
Sbjct: 34 NILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93
Query: 365 CRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI-PFTGYPKPKITW 422
C A NK G S + L + +P + P D +G + ++ P G P P I W
Sbjct: 94 CFARNKFGTALSNRIRLQVSKSPLW--PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
G A + +S PD P P + + +SL L W+AP D GS I N+++E E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGK--- 59
Query: 528 WIRVGNTRF--------TTMAITGLSPGHQYEFRVYAENVYGRS 563
GN F IT LSP +FR+ A N YG S
Sbjct: 60 ----GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTS 99
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
+ I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I+SV D Y N G + + L I
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+GE+ G P P +TW R +V+ + V T++ + I D Y V
Sbjct: 22 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 81
Query: 462 VAENDLGMDSAIVKIQI 478
V EN G A + I
Sbjct: 82 VVENSEGKQEAEFTLTI 98
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 311 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 223 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 278
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
G K +L P + + + + E+V + G PKP W ++ + +
Sbjct: 279 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
+ +E L I + D Y+ VAEN G+
Sbjct: 336 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 371
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 39/240 (16%)
Query: 342 FAEGDTYTLIINSVYGVDADEYVC---RAVNKGGVKSTKAELIIMT-------APKFNVP 391
F +T L I V D Y C V V LI+ PK V
Sbjct: 150 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV- 208
Query: 392 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRD 450
+F +T +KG V ++ G P P I W R D + I H + + IL I +
Sbjct: 209 -QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPN 263
Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGG 510
D Y VAEN G + + K Q++ P + DI H ++ + W+
Sbjct: 264 FQQEDAGSYECVAENSRGKN--VAKGQLTFYAQPNWVQIINDI-HVAME---ESVFWECK 317
Query: 511 SNITNYIVEKREHPMSSWIRVGNTRFT---------TMAITGLSPGHQYEFRVYAENVYG 561
+N R P W++ G+ T T+ IT ++ ++ AEN +G
Sbjct: 318 AN-------GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 314 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 372 GVKSTKAELIIM 383
GV + AEL ++
Sbjct: 370 GVIFSSAELSVI 381
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 306 QNHNAQFQCTITGCPKPTISW-LKGSR-EITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
+ + C + G PKP I W L G+ +I R+ + D LI N DA Y
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DGSLLINNPNKTQDAGTY 77
Query: 364 VCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
C A N G + S +A+L F R R T +G+ +V+
Sbjct: 78 QCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVRRGQGMVL 121
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 311 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 224 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 279
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
G K +L P + + + + E+V + G PKP W ++ + +
Sbjct: 280 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
+ +E L I + D Y+ VAEN G+
Sbjct: 337 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 372
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 39/240 (16%)
Query: 342 FAEGDTYTLIINSVYGVDADEYVC---RAVNKGGVKSTKAELIIMT-------APKFNVP 391
F +T L I V D Y C V V LI+ PK V
Sbjct: 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV- 209
Query: 392 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRD 450
+F +T +KG V ++ G P P I W R D + I H + + IL I +
Sbjct: 210 -QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPN 264
Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGG 510
D Y VAEN G + + K Q++ P + DI H ++ + W+
Sbjct: 265 FQQEDAGSYECVAENSRGKN--VAKGQLTFYAQPNWVQIINDI-HVAME---ESVFWECK 318
Query: 511 SNITNYIVEKREHPMSSWIRVGNTRFT---------TMAITGLSPGHQYEFRVYAENVYG 561
+N R P W++ G+ T T+ IT ++ ++ AEN +G
Sbjct: 319 AN-------GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 372 GVKSTKAELIIM 383
GV + AEL ++
Sbjct: 371 GVIFSSAELSVI 382
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 306 QNHNAQFQCTITGCPKPTISW-LKGSR-EITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
+ + C + G PKP I W L G+ +I R+ + D LI N DA Y
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DGSLLINNPNKTQDAGTY 78
Query: 364 VCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
C A N G + S +A+L F R R T +G+ +V+
Sbjct: 79 QCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVRRGQGMVL 122
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 289 AAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGD 346
+KAP V L + + + + + G PKP +SWL+ + + P R AEG
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
L I + DA Y C+AVN+ G + +A L
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 391 PPRFRDTAYFDK----GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI- 445
PP F+ + D+ G++V++ I G PKP ++W R+ + + E +E
Sbjct: 5 PPTFK-VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I A D Y A N+ G ++++
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDT 347
+ +AP+I +++ Q +A F+ + G P P W K +I S R + + E +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
L+I V G D+ + +A+N G S+ A L++
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 386 PKFNVPPRFR--DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
P P F + +G + ++ G P P+ WY++ IE + E +
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 444 AI-LTIRDASNVDTAPYRVVAENDLGMDSA 472
L IRD + D+A V A N G S+
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSS 90
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
P+++K P I+ L++ + A+F TG P+PT W K + IT ++ + +
Sbjct: 2 PISSK-PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ L I+ D+ Y C N G S+ +L I
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
TG P+P W +D + I GG + + + L I D+ Y +N G S+
Sbjct: 31 TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Query: 473 IVKIQI 478
K+ I
Sbjct: 91 SCKLTI 96
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 70/184 (38%), Gaps = 17/184 (9%)
Query: 310 AQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGDTYTLIINSVYGVDADE-- 362
A C G P PTI W KG + P + + G + L I DE
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 363 YVCRAVN-KGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKI-PFTGYPKPK 419
YVC A N G S A L + + F P GE V++ P G+P+P
Sbjct: 87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNP---SDVMVAVGEPAVMECQPPRGHPEPT 143
Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQI 478
I+W +D ++ + R L I D Y V N +G +S + ++ +
Sbjct: 144 ISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Query: 479 SDRP 482
+RP
Sbjct: 201 LERP 204
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVGNT---RFT 537
P+ P PT+ S+ + W P +GG I ++ VE K+ + WI +
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
++ ITGL G Y+FRV A N+ G S+PS S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPS 108
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P P P ++ V ++W P +GG IQ + ++ ++ + + PS++
Sbjct: 18 PEAPDRPTISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 250 N--IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
+ I L +G Y+FRV A N G S PS+ S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSR 109
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
L N + A F C T P T++W KG E+ S +H EG T L I+++
Sbjct: 15 LTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73
Query: 359 DADEYVCRAVNKGGVKSTKAELII 382
D+D Y C G ++A+L++
Sbjct: 74 DSDTYTCDI----GQAQSRAQLLV 93
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
TL I+ V D Y C A + K + + P GE V +
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 220
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
+ GYP P+I WY++ +ES T + +LTI + S DT Y V+ N +
Sbjct: 221 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 275
Query: 469 MD--SAIVKIQISDRPDPPQFPTVEDIGHDSL 498
+ S +V + + PPQ IG SL
Sbjct: 276 KEKQSHVVSLVVY---VPPQ------IGEKSL 298
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 389 NVPPRFRD-----TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-----FHVE 438
NVPP R A + ++V + G+P+P +TW +D E IE + F+ +
Sbjct: 9 NVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYD 68
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
SE L I+ D A Y +AEN G A + +++
Sbjct: 69 GSE----LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG-DTYTLIINSVYGVD 359
NA A + + C G P+PT++W K I ++ D LII V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 360 ADEYVCRAVNKGG 372
EY+C A NK G
Sbjct: 82 EAEYICIAENKAG 94
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 24/179 (13%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 370 K-GGVKSTKAELIIMTAP-----KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
K G ++ T ++ +P + +P TA G +V +P I W
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPA--NQTAVL--GSDVEFHCKVYSDAQPHIQWL 257
Query: 424 RDNEV----IESGGHFHV---------ETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
+ EV + G +V T + +L++ + + D Y +A N +G
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHI---------FAEGD 346
N A+ + +F C + +P I WLK GS+ + P ++ + +
Sbjct: 231 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKTAGANTTDKE 289
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
L +++V DA EY C A N G A L+++ A
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 370 K-GGVKSTKAELIIMTAP 386
K G ++ T ++ +P
Sbjct: 94 KFGSIRQTYTLDVLERSP 111
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHIF---------AEGD 346
N A+ + +F C + +P I WLK GS+ + P ++ E D
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKSWISESVEAD 181
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ N V D EY+CRA N GV + KA + + P+
Sbjct: 182 VRLRLAN-VSERDGGEYLCRATNFIGV-AEKAFWLSVHGPR 220
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
TL I+ V D Y C A + K + + P GE V +
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
+ GYP P+I WY++ +ES T + +LTI + S DT Y V+ N +
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 469 MD 470
+
Sbjct: 406 KE 407
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 359 DADEYVCRAVNKGGVK--STKAELIIM--TAPKFNVPPRFRDTAYFDKGENVVVKIPFTG 414
D +YVC A ++ K +L ++ AP + T+ GE++ V +G
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI---GESIEVSCTASG 692
Query: 415 YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
P P+I W++DNE + ++ R+ LTIR D Y A + LG
Sbjct: 693 NPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQACSVLG 744
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 723
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
I V D Y C+A + G +A II A
Sbjct: 724 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW--LKGSR 331
L +A ++ Q + AK P + A+ +C G P P I W L GS+
Sbjct: 195 LSLAAEDARQYAPSIKAKFPA------DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
Query: 332 EITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF-NV 390
+ + L I +V D Y C A N G + + +II P + +V
Sbjct: 249 TSKWLSSEPL--------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIR 449
DT D G ++ +G P+P + W RD + + S V E R + L +
Sbjct: 301 ---ITDTEA-DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE 356
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
D+ Y+ VAEN G A ++ +
Sbjct: 357 -----DSGMYQCVAENKHGTVYASAELTV 380
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 20/192 (10%)
Query: 97 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVE---RRDISMPHWICISTTCHDTTFIVQGL 153
D S+IT ++ T+HW P+ +T Y++ + P + + + T L
Sbjct: 9 DSSDITANSFTVHWVAPR----APITGYIIRHHAEHSVGRPRQDRVPPSRNSITL--TNL 62
Query: 154 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 213
G EY+ ++AVN PPL G + P D + V+ + +SW+ P
Sbjct: 63 NPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRD------LEVIASTPTSLL-ISWEPP 115
Query: 214 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS 273
++ Y I E G ++ + + S I N+ G Y +YA G S
Sbjct: 116 ----AVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDS 171
Query: 274 LPSSASNSVQIK 285
SS S+ K
Sbjct: 172 PASSKPVSINYK 183
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
V+E T + TL W+ + VT+Y ++ R T + + GL+
Sbjct: 16 VTETTATSVTLTWDSGNSE---PVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFS 72
Query: 158 EYLFHVMAVNENGMGPPLEGI 178
EY F V+AVN G GPP E +
Sbjct: 73 EYAFRVLAVNSIGRGPPSEAV 93
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKR----EHPMSSWIRVG 532
S P PP V + S+ L W D G++ +T Y ++ R E P V
Sbjct: 5 SSGPKPPIDLVVTETTATSVTLTW-----DSGNSEPVTYYGIQYRAAGTEGPFQEVDGVA 59
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
TR++ I GLSP +Y FRV A N GR PS
Sbjct: 60 TTRYS---IGGLSPFSEYAFRVLAVNSIGRGPPS 90
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQ 248
P PP VVT+ V L+WD + + Y I G++ +Q V+ A ++
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSE---PVTYYGIQYRAAGTEGPFQEVDG--VATTR 62
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+I L +Y FRV A N G PS A
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEA 92
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
A AP + L++ + F C + G PKP I W K ++I+P + H+ T
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 350 LIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 382
+++ D Y A N G S L++
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVE---- 438
TAP F + + + F+ G V G PKPKI W++D + I H+ ++
Sbjct: 6 TAPFFEM--KLKHYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 62
Query: 439 -TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
T H + D D Y ++A N G S ++ +
Sbjct: 63 GTCSLHTTASTLD----DDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 28/160 (17%)
Query: 334 TPSARHHIFAEGDTY---------------TLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
TPS R + F EG T TLII D+ +Y+C N G +S +
Sbjct: 244 TPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 303
Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 438
L + + P T D G V +TG P ++W +D + I GH
Sbjct: 304 VLTVTAPLSAKIDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH---- 353
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
++L I D Y+ ND A ++++
Sbjct: 354 ---SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
A F C TG P T+SW+K + I S L I SV D Y C N
Sbjct: 328 AVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRN 377
Query: 370 KGGVKSTKAEL 380
AEL
Sbjct: 378 DRESAEASAEL 388
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 97 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 151
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 193 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 244
Query: 152 GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWD 211
LT G EY+ ++A+N P L G + P D + VV + +SWD
Sbjct: 245 NLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRD------LEVVAATPTSLL-ISWD 297
Query: 212 KPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG 271
P ++ Y I E G ++ + + S I L G Y VYA G
Sbjct: 298 AP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG 353
Query: 272 LSLPSSASNSVQIK 285
S SS S+ +
Sbjct: 354 DSPASSKPISINYR 367
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 99 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 157
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 104 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 160
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
EY+ V +V E PL G + K+ D P+ GI + + + + W P
Sbjct: 161 EYVVSVSSVYEQHESTPLRG----RQKTGLDSPT--GID-FSDITANSFTVHWIAPR--- 210
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 268
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 211 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 260
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT--Y 348
+AP I ++ ++ + + +C I+ P P + W + + + + + +T
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 391
TL+I V DA Y AVN+ GV + L + P +P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG---HFHVETSE 441
AP F P+ + +G++V ++ + P PK+ W R+NE+++ + + +
Sbjct: 15 APMFIYKPQSKKVL---EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
R +L I+D + D Y V A N+ G+ + ++ ++ RP+
Sbjct: 72 RVTLL-IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD-TTFIVQGLTEG 156
V +T T T+ W PP + G + YV+E WI + D T F + GL
Sbjct: 16 VDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTD 75
Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAK 184
+ V AVN G P PI K
Sbjct: 76 AKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 489 TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-----RVGNTRFTTMAITG 543
TV+ + ++ + WR P G + + Y++E WI + T+FT ITG
Sbjct: 15 TVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFT---ITG 71
Query: 544 LSPGHQYEFRVYAENVYGRSDP 565
L + RV A N G S+P
Sbjct: 72 LPTDAKIFVRVKAVNAAGASEP 93
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 206 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 265
V + W P G + + GY ++ G++ W N + ++ I L + RV
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 266 AQNEAGLSLPSSASNSVQIKD 286
A N AG S P S + +K+
Sbjct: 84 AVNAAGASEPKYYSQPILVKE 104
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
++ AP + L++ + F C + G PKP I W K ++I+P + H+
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 349 TLIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 382
T +++ D Y A N G S L++
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVE-----TSERHAILTIRDASNVD 455
+G V G PKPKI W++D + I H+ ++ T H + D D
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD----D 77
Query: 456 TAPYRVVAENDLGMDSAIVKIQI 478
Y ++A N G S ++ +
Sbjct: 78 DGNYTIMAANPQGRISCTGRLMV 100
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLI 351
P I N + + + ++G P P +SW R + H I +E ++LI
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
V DA Y C A N+ G + +L ++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 391 PPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER---HA 444
PPRF + D+G + +G P P ++WY + ++S + SE+
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
I + AS D Y VA+N G + V++ +
Sbjct: 65 IFEVVRAS--DAGAYACVAKNRAGEATFTVQLDV 96
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKE-IR 59
+P + I EG ++ +G +VS NGR VQSDD K V + + I E +R
Sbjct: 11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 60 KEDAGDY 66
DAG Y
Sbjct: 71 ASDAGAY 77
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 100 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 159
E+++ T + +N P GG+ + HY V+ ++++ W + + T ++ L Y
Sbjct: 28 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTY 87
Query: 160 LFHVMAVNENGMG 172
V AVN G G
Sbjct: 88 EIRVAAVNGKGQG 100
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 16 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 74
Query: 248 QINIPNLIEGRQYEFRVYAQNEAG 271
+ + NL YE RV A N G
Sbjct: 75 MVVLNNLEPNTTYEIRVAAVNGKG 98
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR 535
+ ++D P P + ++ + + + P GG I +Y V+ +E W V +
Sbjct: 12 LALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHG 71
Query: 536 FTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 566
TM + L P YE RV A N G+ D S
Sbjct: 72 VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 103
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 296 IVPLRNANAIQNHNAQFQ--CTITGCPKPTIS-WLKGSREITPSARHHIFAEGD-----T 347
+V + A+ + +F CTI S W + + + +++ + GD
Sbjct: 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 272
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
TL I+S D+ ++C A N G + L ++ N+ P T + + GENV
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332
Query: 408 VKIPFTGYPKPK 419
+ + + +PKP+
Sbjct: 333 LIVEYEAFPKPE 344
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 296 IVPLRNANAIQNHNAQFQ--CTITGCPKPTIS-WLKGSREITPSARHHIFAEGD-----T 347
+V + A+ + +F CTI S W + + + +++ + GD
Sbjct: 188 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 247
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
TL I+S D+ ++C A N G + L ++ N+ P T + + GENV
Sbjct: 248 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 307
Query: 408 VKIPFTGYPKPK 419
+ + + +PKP+
Sbjct: 308 LIVEYEAFPKPE 319
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADE 362
+ H QF C G P P I WL + + + R +F +G TL + D
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGT 455
Query: 363 YVCRAVNKGGVKSTKAEL 380
Y+C A N GG S A L
Sbjct: 456 YLCIAANAGGNDSMPAHL 473
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 190 PSPPGIPVVTQVGGDF----VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
P PGIPV V G ++WD P D+GG+ I Y ++ E GS+ + + A
Sbjct: 15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAE-GSNGNKWEMIYSGA 73
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
+ L G Y RVY ++ G S+ S S+ ++ P +
Sbjct: 74 TREHLCDRLNPGCFYRLRVYCISDGGQ---SAVSESLLVQTPAVS 115
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 480 DRPDPPQFPTVEDIGHD-SLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNTRFT 537
D+P P P+V+ H S + W P +GG+ I Y+VE E + W + +
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRS 563
L+PG Y RVY + G+S
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQS 101
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 100 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
+I H+ + W+PPK +GG + YVVE + S
Sbjct: 29 KIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 370 KGGVKSTKAELIIMTAPKFN--VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G + L ++ + + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 428 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGMD 470
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 346
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 177
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 28 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 370 KGGVKSTKAELIIMTAPKFN--VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G + L ++ + + A G +V +P I W + E
Sbjct: 88 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 147
Query: 428 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGMD 470
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 148 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 346
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 117 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 175
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 176 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 354
II PL + + + +C ++ P + WLK + I S ++ + EG L+I
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 355 VYGVDADEYVC 365
DA EY C
Sbjct: 70 ASLKDAGEYTC 80
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 370 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 428 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGMD 470
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 346
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 177
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHF----HVET-SERHAILTIRDASNVDTAPYRVV 462
IPFT G PKP + W+ + ++ + HV +E H L + + ++++ Y ++
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 463 AENDLGMDSAIVKIQISDRP 482
A+N+ G D + P
Sbjct: 81 AKNEYGKDEKQISAHFMGWP 100
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 29 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 370 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 89 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 148
Query: 428 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGMD 470
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 149 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 347
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 118 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 177
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEG 156
+S + + L W P +DG + Y++E + + P + +++ T+ V+GL
Sbjct: 28 LSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA 86
Query: 157 QEYLFHVMAVNENGMG 172
+ Y F + AVN+ G G
Sbjct: 87 RSYQFRLCAVNDVGKG 102
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 190 PSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP- 246
P P PV T V +NL+W KP D G S + Y ++ E ++A V +A P
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSE--NNAPWTVLLASVDPK 74
Query: 247 -SQINIPNLIEGRQYEFRVYAQNEAG----------LSLPSSASNS 281
+ + + L+ R Y+FR+ A N+ G +SLP S +S
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS 120
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHF----HVET-SERHAILTIRDASNVDTAPYRVV 462
IPFT G PKP + W+ + ++ + HV +E H L + + ++++ Y ++
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 463 AENDLGMDSAIVKIQISDRP 482
A+N+ G D + P
Sbjct: 81 AKNEYGKDEKQISAHFMGWP 100
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 32 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
Query: 370 KGG 372
+ G
Sbjct: 92 EYG 94
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 31 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
Query: 370 KGG 372
+ G
Sbjct: 91 EYG 93
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 370 KGG 372
+ G
Sbjct: 98 EYG 100
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 349
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 396
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 98 VSEITKHTCTLHWNPPKYDGGLKVTHYVVE--RRDISMPHWICISTTCHDTTFIVQGLTE 155
+S +T L W+PPK G ++ Y ++ R D + P+ I D F V GL +
Sbjct: 15 ISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKD--DQHFTVTGLHK 71
Query: 156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
G Y+F + A N G+G E + ++P D P
Sbjct: 72 GTTYIFRLAAKNRAGLGEEFEK----EIRTPEDLSGP 104
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE--HPMSSW---IRVG 532
+ D P+PP + D S+ L W P D S IT +I+E + H W V
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T+ T A LSP Y FRV A N G+S PS S+ T
Sbjct: 72 GTQ--TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 187 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID----KHEVGSDAWQRVNVA 242
YD P+PP +T V LSW P DD S I + I+ H+ G Q
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
+Q+N+ + Y FRV A N G SLPS AS K K P
Sbjct: 73 TQTTAQLNLSPYV---NYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 370 KGG 372
+ G
Sbjct: 98 EYG 100
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 349
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 396
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 27 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
Query: 370 KGG 372
+ G
Sbjct: 87 EYG 89
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
+ I LRN A + A C ++ + W KG + RH + +G L I
Sbjct: 10 KFIEGLRNEEATEGDTATLWCELS--KAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIR 67
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
+ VDA EY C G + T A L + P
Sbjct: 68 GLAVVDAGEYSCVC----GQERTSATLTVRALP 96
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 370 KGG 372
+ G
Sbjct: 90 EYG 92
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 346
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 177
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 350 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
L+ + D Y C N G + +L +++APK+ P +G++V +
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE--KVIVVKQGQDVTI 329
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
TG P P + W + + + SGG V S L I+ N D Y A N+ G
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHG 384
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 284 IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA 343
+ P + PE ++ ++ Q + C +TG P P + W ++ ++ R +
Sbjct: 306 VSAPKYEQKPEKVIVVK-----QGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTD 359
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374
G L+I V D Y CRA N+ G K
Sbjct: 360 SG----LVIKGVKNGDKGYYGCRATNEHGDK 386
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
LRN A + A +C ++ + W KG + RH + +G L I +
Sbjct: 26 LRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAE 83
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
DA EY+C G + T A L + P
Sbjct: 84 DAGEYLCMC----GKERTSAMLTVRAMP 107
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 97 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 149
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 111 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 169
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+Q LT Y F + A N GMGP E +
Sbjct: 170 IQELTLDTPYYFKIQARNSKGMGPMSEAV 198
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 309 NAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 367
+ ++ C I + T ++W G R++ S ++ I E L + + +D Y C+
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKV 77
Query: 368 VNKGGVKSTKAELII 382
VN G S+ AEL +
Sbjct: 78 VNDYGEDSSYAELFV 92
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 419 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476
++TWY +E+ + + + AIL ++D + +D YR ND G DS+ ++
Sbjct: 33 QVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 22 DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
DQ +V+ R +++ ++++ T D I+++K+I K D G Y
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTY 73
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 460
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 461 VVAENDLGMDSAIVKIQISDRP 482
++A N G SA + D P
Sbjct: 326 LLAANPFGQASASIMAAFMDNP 347
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS---WIRV----G 532
+ P PP + +IG S+ L +R P +DG ++I+ ++VE + + W+ +
Sbjct: 16 ELPGPPTNLGISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSN 74
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+M + L+P Y FR+ N+ G S PS S I T
Sbjct: 75 EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG----SDAWQRVNV 241
P + P PP ++ +G V L + +P DG + I W+ + +VG + W ++
Sbjct: 14 PPELPGPPTNLGISNIGPRSVTLQF-RPGYDGKTSIS-RWLVEAQVGVVGEGEEWLLIHQ 71
Query: 242 AICAP--SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ 283
P + +P+L Y FR+ N G S PS S +Q
Sbjct: 72 LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 115
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 98 VSEITKHTCTLHWNPPKYD-GGLKVTHYVV----ERRDISMPHWICISTTCHDTTFIVQG 152
V+ +T + T+ W PP G ++T+ E +++++P T+ + G
Sbjct: 10 VTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPP--------SSTSVTITG 61
Query: 153 LTEGQEYLFHVMAVNENGMGPPL 175
LT G EY+ V A+ +N PPL
Sbjct: 62 LTPGVEYVVSVYALKDNQESPPL 84
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP--SARHHIFAEGDTYTLIINSVY 356
L + A + +C ++ + W K EI P +R+ I EG + LII
Sbjct: 14 LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 357 GVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
DA EY + GG S K + + + P
Sbjct: 73 KADAAEY--SVMTTGGQSSAKLSVDLKSGP 100
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 97 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 149
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 24 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 82
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
+Q LT Y F + A N GMGP E +
Sbjct: 83 IQELTLDTPYYFKIQARNSKGMGPMSEAVQ 112
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 206 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 265
+ L W PL DGGS I Y ++ + D + V + + + +L+ G+ Y FR+
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQG--SEVECTVSSLLPGKTYSFRLR 83
Query: 266 AQNEAGL 272
A N+ G
Sbjct: 84 AANKMGF 90
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 32/79 (40%)
Query: 498 LALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE 557
+ L W P+ DGGS I+ Y VE V ++ L PG Y FR+ A
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAA 85
Query: 558 NVYGRSDPSTTSDLITTYG 576
N G S D+ T G
Sbjct: 86 NKMGFGPFSEKCDITTAPG 104
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 108 LHWNPPKYDGGLKVTHYVVERRDISM--PHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
L W PP DGG ++ Y VE I P + + T V L G+ Y F + A
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT---VSSLLPGKTYSFRLRA 84
Query: 166 VNENGMGP 173
N+ G GP
Sbjct: 85 ANKMGFGP 92
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
GE++ V +G P P+I W++DNE + ++ R+ LTIR D Y
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQ 82
Query: 463 AENDLG 468
A + LG
Sbjct: 83 ACSVLG 88
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
I V D Y C+A + G +A II A
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 312 FQCTITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
F CT G P+ +I W E I + R + EG L I + DA Y C+A +
Sbjct: 22 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80
Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNE 427
G ++ +A +++ K FR+ F +GE+ V + P P ++W NE
Sbjct: 81 KG-QTQEATVVLEIYQKLT----FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 135
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREIT 334
Q +A+ C ++ P P +SWL + E+T
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 208 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
L W P G I GY ++ GS+ W N + +L G + FRV
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 268 NEAGLSLPSSASNSVQIKD 286
N AG S P++ V I++
Sbjct: 87 NIAGRSEPATLLQPVTIRE 105
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 500 LVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT--GLSPGHQYEFRVYAE 557
L WR P G I Y+VE W+ T L G + FRV
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 558 NVYGRSDPSTTSDLIT 573
N+ GRS+P+T +T
Sbjct: 87 NIAGRSEPATLLQPVT 102
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 108 LHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAV 166
L W PP G + Y+VE W+ + F V+ L G LF V+ V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 167 NENGMGPPLEGINPIKAK 184
N G P + P+ +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P P V + +G + +SW +P + +QGY ++ + R+N+ A + +
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 250 NIPNLIEGRQYEFRVYAQNEAG 271
+ +L+ Y FRV AQ++ G
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEG 97
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 22/179 (12%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 30 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 370 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 428 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGMD 470
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 347
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
L I +V DA EY C A N G+ A L ++ A
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 99 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 157
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 196 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 252
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
EY+ V +V E PL G + K+ D SP GI + + + + W P
Sbjct: 253 EYVVSVSSVYEQHESTPLRG----RQKTGLD--SPTGID-FSDITANSFTVHWIAPR--- 302
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 268
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 303 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 352
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 97 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 151
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 285 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 336
Query: 152 GLTEGQEYLFHVMAVNENGMGPPLEG 177
LT G EY+ ++A+N P L G
Sbjct: 337 NLTPGTEYVVSIVALNGREESPLLIG 362
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 13/161 (8%)
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI-IMT 384
WL + + F L I +V D Y C + KS ++ I ++
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
Query: 385 APKFNVPP-------RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
P+ P +F+D Y G+NV ++ G P P I W + E + S
Sbjct: 104 IPERTTKPYPADIVVQFKDV-YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA---- 158
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
E S A+L I + D Y AEN G D +I +
Sbjct: 159 EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
+I+V ++ A+ N +C G P P I W K + +A I G L I
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSGA--VLKIF 170
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELII 382
++ D Y C A N G +A + +
Sbjct: 171 NIQLEDEGIYECEAENIRGKDKHQARIYV 199
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 108 LHWNPPK---YDGGLKVTHYVVERRDISMPHWICIS-TTCHDTTFIVQGLTEGQEYLFHV 163
+HW PP +G ++T Y + R S + + + + +++GL G EY F V
Sbjct: 37 IHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRV 94
Query: 164 MAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 195
A+ NG GP + ++ +S D+ P +
Sbjct: 95 AALTINGTGPATDWLSAETFESDLDETRVPEV 126
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP-SQIN 250
P G+ V G V L WD P + R+ GY ++ + GS W+ ++ A+ +++
Sbjct: 11 PRGLVAVRTPRG--VLLHWDPP-ELVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELL 66
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
+P LI+ YEFR+ A + +S PS+ +N
Sbjct: 67 VPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 347
+ + +I V + + + C TG P W K ++EI G+T
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI---------PNGNT 64
Query: 348 YTLIINSVYGVDADEYVCRAVN 369
LI N+V+ DA YVCR N
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNN 86
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
LRN A++ A C ++ + W KG + R+ + EG L I +
Sbjct: 15 LRNEEAVEGATAMLWCELSKVAP--VEWRKGPENLRDGDRYILRQEGTRCELQICGLAMA 72
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
DA EY+C G + T A L I P
Sbjct: 73 DAGEYLCVC----GQERTSATLTIRALP 96
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 37 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 370 KGG 372
+ G
Sbjct: 97 EYG 99
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 349
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 126 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 185
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 396
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 186 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 230
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDD--GGSRIQGYWIDKHEVGSDAWQRV-NVAICAP 246
PS P V + V F+ L+W P D G + + K + A +RV N +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI---ARERVENTSHPGE 74
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAG 271
Q+ I NL+ Y FRV AQN+ G
Sbjct: 75 MQVTIQNLMPATVYIFRVMAQNKHG 99
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 498 LALVWRAPIWD-GGSNITNYIVEKREHPMSSWIRVGNTRF---TTMAITGLSPGHQYEFR 553
+ L WR P D G N+T + +E RV NT + I L P Y FR
Sbjct: 34 IKLTWRTPASDPHGDNLTYSVFYTKEGIARE--RVENTSHPGEMQVTIQNLMPATVYIFR 91
Query: 554 VYAENVYGRSDPS 566
V A+N +G + S
Sbjct: 92 VMAQNKHGSGESS 104
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 473 IVKIQISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKREHPMSSWI 529
I + +SD P PPQ ++E + S+ + W P G N IT Y + R+ +
Sbjct: 19 ITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPP-SGTQNGFITGYKIRHRKTTRRGEM 77
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
TGL G QY F+V A V G PS
Sbjct: 78 ETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 101 ITKHTCTLHWNPP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLT 154
+ + + W PP + G K+ H RR + ++ ++ GL
Sbjct: 40 VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE------METLEPNNLWYLFTGLE 93
Query: 155 EGQEYLFHVMAVNENGMGPP 174
+G +Y F V A+ NG GPP
Sbjct: 94 KGSQYSFQVSAMTVNGTGPP 113
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 314 CTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
C + G P P +SWLK + + + ++ F G T IN V D+ +Y NK G
Sbjct: 139 CNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198
Query: 373 VKST 376
+++
Sbjct: 199 SETS 202
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNV 454
D +G+ + + G P P+++W ++ + + H +++ + R A TI S
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184
Query: 455 DTAPYRVVAENDLGMDSAIVKIQI 478
D+ Y +V +N G +++ + +
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSV 208
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH- 443
AP F+ +D A + G++ V++ G P P+ITW + + I+ + T E
Sbjct: 11 APSFS--SVLKDCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGV 63
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDS 471
A L I+DA D Y +AEN LG S
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVS 91
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
SS S+ +++ AP L++ I+ + QC++ G P P I+WL + I
Sbjct: 2 SSGSSGMEV-------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ- 53
Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
AR E L I D Y C A N G S A
Sbjct: 54 YARST--CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 460
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 461 VVAENDLGMDSAIVKIQISDRP 482
++A N G SA + D P
Sbjct: 84 LLAANPFGQASASIMAAFMDNP 105
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNV 454
D +G+ + + G P P+++W ++ + + S H +++ + R A TI S
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 455 DTAPYRVVAENDLGMDSAIVKIQI 478
D+ Y +V +N G +++ + +
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTVSV 313
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 305 IQNHNA-QFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADE 362
IQ A C + G P P +SWLK + + ++ F G T IN V D+ +
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGK 293
Query: 363 YVCRAVNKGGVKST 376
Y NK G +++
Sbjct: 294 YGLVVKNKYGSETS 307
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 460
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 461 VVAENDLGMDSAIVKIQISDRP 482
++A N G SA + D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
LR+ +I+ A +C ++ + W KG + RH + +G L I +
Sbjct: 15 LRHQESIEGATATLRCELS--KAAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVA 72
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCVC----GEERTSATLTVKALP 96
>pdb|3KJ4|L Chain L, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|B Chain B, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 219
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ RN +N+ A +Q PKP I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLLNSRNR---KNYLAWYQQKPGQSPKPLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
R G +TL I+SV D Y C
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYC 94
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS----REITPSARHHIFAEGDT 347
AP+I R+ N + +A C G P P W K EI+ S+ +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 348 YTL--IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
YT I+N D EY C A N G S L +
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 17/175 (9%)
Query: 312 FQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
QC +T + W K E+T + ++ IN D+ EY C +
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEYRINKPRAEDSGEYHC-VYH 76
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD---- 425
A + + AP R + ++G++ ++ GYP P+ W +
Sbjct: 77 FVSAPKANATIEVKAAPDITGHKRSENK---NEGQDAMMYCKSVGYPHPEWMWRKKENGV 133
Query: 426 -NEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDLGMDSAIVKIQI 478
E+ S G F + E + L I + D Y A N +G S +++
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379
PK + W K +EI PS ++ +G L IN+ D EY A G + E
Sbjct: 35 PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTE 90
Query: 380 LIIMTAP 386
L + + P
Sbjct: 91 LFVRSGP 97
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN 533
V+I D + Q T D+ + + PI D N+ N V + WI + +
Sbjct: 66 VEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIAD 125
Query: 534 TRFTTMAITGLSPGHQYEFRV 554
+ A GL+ GH+++ ++
Sbjct: 126 SDVIFFA-KGLASGHKFDVKI 145
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 460
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 461 VVAENDLGMDSAIVKIQISDRP 482
++A N G SA + D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
>pdb|3DUR|A Chain A, Crystal Structure Of Sag173-04
pdb|3DUR|C Chain C, Crystal Structure Of Sag173-04
Length = 112
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 97 DVSEITK----HTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPHWICISTTCHDTTFI 149
D++ IT+ + W PP G K+T Y++ ++I + WI + + T
Sbjct: 14 DLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQ 72
Query: 150 VQGLTEGQEYLFHVMAVNENGMGP 173
+ L Y F + A N G+GP
Sbjct: 73 IMDLNLDTMYYFRIQARNSKGVGP 96
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKLLIYWA-STRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 374
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 374
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 193 PGIPVVTQVGGDFVNLSWDK----PLDDGGSRI-------QGYWIDKHEVGSDAWQRVNV 241
P PV+T+ G +++L W K P D+G S I GY G D
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL------ 64
Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
+ NL +Y+F+V A N G S PS
Sbjct: 65 ------AYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 485 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTTMAITG 543
P P + G L+L W P +YI+E E + + +
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN 70
Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
L +Y+F+V A N G+S+PS + T
Sbjct: 71 LRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 374
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 515 NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG 561
NY + E + W V T + +T + P Y+FRV A NV+G
Sbjct: 201 NYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247
>pdb|3DUS|A Chain A, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUS|C Chain C, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUU|A Chain A, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DUU|C Chain C, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DV4|A Chain A, Crystal Structure Of Sag506-01, Tetragonal, Crystal 1
pdb|3DV6|A Chain A, Crystal Structure Of Sag506-01, Tetragonal, Crystal 2
Length = 112
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S + M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGERVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
L+ A + A QC ++ + W KG + R+ + +G L I+ +
Sbjct: 15 LKTKEASEGATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVA 72
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAP 386
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCMC----GQERTSATLTVRALP 96
>pdb|3CSV|A Chain A, Crystal Structure Of A Putative Aminoglycoside
Phosphotransferase (Yp_614837.1) From Silicibacter Sp.
Tm1040 At 2.15 A Resolution
Length = 333
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 263 RVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
RV+A E GL+ P+ AS + +I + + A APE++ LR
Sbjct: 295 RVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLR 332
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 11/139 (7%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
R + +I + +Q G P+ I + S PS R G +TL INSV D
Sbjct: 24 RASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPS-RFSGSGSGTDFTLSINSVESED 82
Query: 360 ADEYVCRAVNKGGV---KSTKAELI-IMTAPK-FNVPPRFRDTAYFDKGENVVVKIPFTG 414
+Y C+ N TK EL + AP F PP G VV +
Sbjct: 83 IADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPP---SDEQLKSGTASVVCLLNNF 139
Query: 415 YPK-PKITWYRDNEVIESG 432
YP+ K+ W DN ++SG
Sbjct: 140 YPREAKVQWKVDN-ALQSG 157
>pdb|2GKI|A Chain A, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
pdb|2GKI|B Chain B, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
Length = 291
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 166 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYWAS-TRESG 221
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 222 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 253
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
I ++N A + A QC ++ + W KGS + R+ + +G L I+ +
Sbjct: 12 IEDVKNQEAREGATAVLQCELS--KAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGL 69
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
D EY C G + T A L + P
Sbjct: 70 SVADTGEYSCVC----GQERTSATLTVRALP 96
>pdb|3BD3|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD3|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
Length = 112
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 7 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 62
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 63 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 94
>pdb|2I9L|A Chain A, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|C Chain C, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|E Chain E, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|G Chain G, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVSMSCKSSQTLL---NSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|43C9|A Chain A, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|C Chain C, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|E Chain E, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|G Chain G, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43CA|A Chain A, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|C Chain C, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|E Chain E, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|G Chain G, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
Length = 113
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + SV K M+ K+ + ++ + N +N+ A +Q PK + + +RE
Sbjct: 8 PSSLAMSVGQKVTMSCKSSQSLLNISNQ---KNYLAWYQQKPGQSPK-LLVYFASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D +Y C+
Sbjct: 64 VPDRFIGSGSGTDFTLTISSVQAEDQADYFCQ 95
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 485 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGL 544
P+ V ++ DSL L W AP S + Y ++ + G+ R + +TGL
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSER--SYDLTGL 62
Query: 545 SPGHQYEFRVYAENVYGRSDP 565
PG +Y +Y RS+P
Sbjct: 63 KPGTEYTVSIYGVKGGHRSNP 83
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
I ++N A + A QC + + W KGS + R+ + +G L I +
Sbjct: 12 IEDVKNQEAREGATAVLQCELNSAAP--VEWRKGSETLRDGDRYSLRQDGTKCELQIRGL 69
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
D EY C G + T A L + P
Sbjct: 70 AMADTGEYSCVC----GQERTSAMLTVRALP 96
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 354
+ R + +I FQ I G P+ I + S PS R G +TL INS
Sbjct: 19 VSFSCRASQSIGTSIHWFQQRINGSPRLLIEYASESISGIPS-RFSGSGSGTDFTLTINS 77
Query: 355 VYGVDADEYVCRAVN 369
V D +Y C+ N
Sbjct: 78 VESEDIADYYCQQSN 92
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE----KREHPMSSWIRVGNTRFTT 538
PP+ V D ++ + WR IT + V+ + P+ I+ +T
Sbjct: 95 SPPRRARVTDATETTITISWRT----KTETITGFQVDAVPANGQTPIQRTIKPDVRSYT- 149
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDP-----STTSD-------LITTYGELLSGMEAPI 586
ITGL PG Y+ +Y N RS P ST D L TT LL + P
Sbjct: 150 --ITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPR 207
Query: 587 SLIT 590
+ IT
Sbjct: 208 ARIT 211
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 496 DSLALVWRAPIWDGGSNITNYIV--EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFR 553
+SL + W+ P + IT YI+ EK P + T ITGL PG +Y
Sbjct: 197 NSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIY 252
Query: 554 VYAENVYGRSDP 565
V A +S+P
Sbjct: 253 VIALKNNQKSEP 264
>pdb|2ZUQ|B Chain B, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|E Chain E, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|B Chain B, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|E Chain E, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 239
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 28 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 83
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 84 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 115
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF--IKEIR 59
P L + +G K+ G + ++ K+G VVQ+ D+ V + + I F +K +
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 60 KEDAGDY 66
+ DAG Y
Sbjct: 69 RSDAGRY 75
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI--LTIRDASNVDTAPY 459
+G+ V + G +P I W +D V+++ ++ SE+H I L+++ D Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 460 RVVAEN 465
E+
Sbjct: 76 WCQVED 81
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 19/129 (14%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT--LIINSVYGVDADEY 363
Q + C++ G +P I W+K + + +I + L + SV DA Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 364 VCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF------TGYP 416
C+ + G + S L + P F V P +D A V PF G P
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEP--KDLA-------VPPNAPFQLSCEAVGPP 126
Query: 417 KP-KITWYR 424
+P I W+R
Sbjct: 127 EPVTIVWWR 135
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
R A +A C + + ++W K ++++ S++ + A G T L++ +
Sbjct: 19 REVQAEAGASATLSCEVAQA-QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAE 77
Query: 360 ADEYVCRA 367
A EY C A
Sbjct: 78 AGEYSCEA 85
>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 240
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + SV K M+ ++ + L N +++ A FQ PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCRSSQ---SLLNTRTRKSYLAWFQQKPGQSPKMLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE----KREHPMSSWIRVGNTRFTT 538
PP+ V D ++ + WR IT + V+ + P+ I+ +T
Sbjct: 114 SPPRRARVTDATETTITISWRT----KTETITGFQVDAVPANGQTPIQRTIKPDVRSYT- 168
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDP-----STTSD-------LITTYGELLSGMEAPI 586
ITGL PG Y+ +Y N RS P ST D L TT LL + P
Sbjct: 169 --ITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPR 226
Query: 587 SLIT 590
+ IT
Sbjct: 227 ARIT 230
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 496 DSLALVWRAPIWDGGSNITNYIV--EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFR 553
+SL + W+ P + IT YI+ EK P + T ITGL PG +Y
Sbjct: 216 NSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIY 271
Query: 554 VYAENVYGRSDP 565
V A +S+P
Sbjct: 272 VIALKNNQKSEP 283
>pdb|1MHH|A Chain A, Antibody-Antigen Complex
pdb|1MHH|C Chain C, Antibody-Antigen Complex
Length = 220
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYWA-STRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + SV K M+ K+ + ++ RN N+ + +Q PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCKSSQSLLYSRNQ---MNYLSWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQ 95
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW------IRVGNTRFT 537
PP P V + +S+ L W P DG + + + +W I G ++
Sbjct: 5 PPTPPNVTRLSDESVXLRWXVPRNDGLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKWN 64
Query: 538 -------TMAITGLSPGHQYEFRVYAENVYGRSD 564
T ++T L P H Y FR+ A VY +D
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILA--VYSNND 96
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGS----NITNYIVEKREHPMSS----------WI 529
PP P V + +S+ L W P DG + +V KR++ ++ W
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD---PSTTSDLITTYGELLSGMEAP 585
FT ++T L P H Y FR+ A VY +D +T++ G L M P
Sbjct: 64 SELGKSFTA-SVTDLKPQHTYRFRILA--VYSNNDNKESNTSAKFYLQPGAALDPMPVP 119
>pdb|3HZY|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1N64|L Chain L, Crystal Structure Analysis Of The Immunodominant Antigenic
Site On Hepatitis C Virus Protein Bound To Mab 19d9d6
pdb|1NLB|L Chain L, Crystal Structure Of Anti-Hcv Monoclonal Antibody 19d9d6
pdb|1XCQ|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|E Chain E, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|G Chain G, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCT|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a, L57h,
Y64w) In Space Group P21212
pdb|1XCT|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a, L57h,
Y64w) In Space Group P21212
pdb|1XF5|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1XF5|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1YMH|A Chain A, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl) Mutant
A66w
pdb|1YMH|C Chain C, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl) Mutant
A66w
Length = 220
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYWA-STRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 491 EDIGHDSLALVWRAPIWDGGSNI---TNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPG 547
E G S++L+W+ P G + Y + +E S ++ TR T ++GL PG
Sbjct: 20 ERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRAT---VSGLKPG 76
Query: 548 HQYEFRVYAENVYG 561
+Y F+V A G
Sbjct: 77 TRYVFQVRARTSAG 90
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGS----NITNYIVEKREHPMSS----------WI 529
PP P V + +S+ L W P DG + +V KR++ ++ W
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD---PSTTSDLITTYGELLSGMEAP 585
FT ++T L P H Y FR+ A VY +D +T++ G L M P
Sbjct: 64 SELGKSFTA-SVTDLKPQHTYRFRILA--VYSNNDNKESNTSAKFYLQPGAALDPMPVP 119
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 211
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
A+ + + + + I N+ A +Q + PK I + PS R G Y
Sbjct: 13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPS-RFSGSGSGTDY 71
Query: 349 TLIINSVYGVDADEYVCRAVNKGGV--KSTKAELIIMTAPKFNV-PPRFRDTAYFDKGEN 405
TL I+S+ D Y C N G TK EL TAP ++ PP T G
Sbjct: 72 TLTISSLQPEDVATYFCYQYNNGYTFGAGTKLEL-KRTAPTVSIFPP---STEQLATGGA 127
Query: 406 VVVKIPFTGYPK 417
VV + YP+
Sbjct: 128 SVVCLMNNFYPR 139
>pdb|3I02|A Chain A, Crystal Structure Of S54-10 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
pdb|3I02|C Chain C, Crystal Structure Of S54-10 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKLLIFW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1Q9K|A Chain A, S25-2 Fab Unliganded 1
pdb|1Q9L|A Chain A, S25-2 Fab Unliganded 2
pdb|1Q9L|C Chain C, S25-2 Fab Unliganded 2
pdb|2R1W|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1X|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1Y|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R23|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2B|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2E|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2H|A Chain A, Structure Of S25-2 In Complex With Ko
pdb|3BPC|A Chain A, Co-Crystal Structure Of S25-2 Fab In Complex With
5-Deoxy-4- Epi-2,3-Dehydro Kdo (4.8) Kdo
pdb|3SY0|A Chain A, S25-2- A(2-8)-A(2-4)kdo Trisaccharide Complex
pdb|3T4Y|A Chain A, S25-2- Kdo Monosaccharide Complex
pdb|3T65|A Chain A, S25-2- A(2-8)kdo Disaccharide Complex
pdb|3T77|A Chain A, S25-2- A(2-4)kdo Disaccharide Complex
pdb|4HGW|A Chain A, Crystal Structure Of S25-2 In Complex With A
5,6-dehydro-kdo Disaccharide
Length = 219
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTITSVQAEDLAVYYCK 95
>pdb|4F2M|B Chain B, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
pdb|4F2M|D Chain D, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
Length = 214
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 354
+ + R + +I +Q G P+P I + S PS R G +TL INS
Sbjct: 19 VSLSCRASQSIGTSIHWYQQRTNGSPRPLIKYASESISGIPS-RFSGSGSGTDFTLNINS 77
Query: 355 VYGVDADEYVCRAVN 369
V D +Y C+ +
Sbjct: 78 VESEDIADYFCQQTD 92
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ +SP Y FRV A N G S PS SD TT
Sbjct: 66 VVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
+Y V A G GP + + ++ + PS PG V LSW +P +
Sbjct: 70 DYEMKVCAYGAQGEGP---YSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 218 GSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL 272
G I Y + V D ++V V + I NL E + Y + V A+N AG
Sbjct: 127 G-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGW 185
Query: 273 SLPSSA--SNSVQIKDPMA 289
A + + Q K PM+
Sbjct: 186 GPEREAIINLATQPKRPMS 204
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 310 AQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
A +C TG P P ISWLK G R I +G TL I ++ D Y C A
Sbjct: 26 ALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVAT 82
Query: 369 NKGGVKSTKAEL 380
+ G S A L
Sbjct: 83 SSSGETSWSAVL 94
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 416 PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
P + WY+D E + S G +E + +L ++ A + D Y A D
Sbjct: 23 PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD 73
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
+Y V A G GP + + ++ + PS PG V LSW +P +
Sbjct: 70 DYEMKVCAYGAQGEGP---YSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 218 GSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL 272
G I Y + V D ++V V + I NL E + Y + V A+N AG
Sbjct: 127 G-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGW 185
Query: 273 SLPSSA--SNSVQIKDPMA 289
A + + Q K PM+
Sbjct: 186 GPEREAIINLATQPKRPMS 204
>pdb|3MBX|L Chain L, Crystal Structure Of Chimeric Antibody X836
Length = 220
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + SV K M+ K+ + + L N N +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCKSSQSL--LYNNNQ-KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQ 95
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
+Y V A G GP + + ++ + PS PG V LSW +P +
Sbjct: 69 DYEMKVCAYGAQGEGP---YSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN 125
Query: 218 GSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL 272
G I Y + V D ++V V + I NL E + Y + V A+N AG
Sbjct: 126 G-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGW 184
Query: 273 SLPSSA--SNSVQIKDPMA 289
A + + Q K PM+
Sbjct: 185 GPEREAIINLATQPKRPMS 203
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 310 AQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGDTYTLIINSVYGVDADE-- 362
A C G P PTI W KG + P + + G + L I DE
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 363 YVCRAVNKGG 372
YVC A N G
Sbjct: 87 YVCVARNYLG 96
>pdb|3O2D|L Chain L, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 219
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
P S + S+ + M K+ + ++ N +N+ A +Q PK I W +RE
Sbjct: 8 PDSLAVSLGERVTMNCKSSQSLLYSTNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK----GGVKSTKAELIIMTAPKFNV 390
R G +TL I+SV D Y C+ GG + + + F
Sbjct: 64 VPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYRTFGGGTKLEIKRTVAAPSVFIF 123
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPK-PKITWYRDNEVIESG 432
PP G VV + YP+ K+ W DN ++SG
Sbjct: 124 PPSDEQ---LKSGTASVVCLLNNFYPREAKVQWKVDN-ALQSG 162
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 32/89 (35%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
AP I + +R+ N +F + P + W E+ S++ H TL
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAEL 380
I + D+ Y N G S A L
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 28/77 (36%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
G+N + P ++ WY + ++ H + L I D D+ YR V
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
Query: 463 AENDLGMDSAIVKIQIS 479
N G S + ++
Sbjct: 83 CTNYKGEASDYATLDVT 99
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ VTHY + D ++P + T Q L G Y F V +N G G P I
Sbjct: 20 VXVTHYFLPPDD-AVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRG-PFSEI 77
Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGG--DFVNLSWDKPLDDGGSRIQ 222
+ K P PG P ++ D +L+W+ P G I+
Sbjct: 78 SAFKT----CLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIE 119
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
+Y V A G GP + + ++ + PS PG V LSW +P +
Sbjct: 66 DYEMKVCAYGAQGEGP---YSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN 122
Query: 218 GSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG 271
G I Y + V D ++V V + I NL E + Y + V A+N AG
Sbjct: 123 G-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAG 180
>pdb|3MNV|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
pdb|3MNV|C Chain C, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
pdb|3MNW|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment With A Gp41 Mper-Derived Peptide In A
Helical Conformation
pdb|3MNZ|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment With A Gp41 Mper-Derived Peptide
Bearing Ala Substitutions In A Helical Conformation
pdb|3MO1|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
Length = 224
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S K M K+ + ++ RN +N+ A +Q PK + + RE
Sbjct: 10 PSSLAMSGGQKVTMRCKSSQSLLNSRNE---RNYLAWYQQKPGQSPKLLV-YFASIRESG 65
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVC-RAVNK----GGVKSTKAELIIMTAPKFN 389
R G +TL I+SV D +Y C + N GG + + + F
Sbjct: 66 VPDRFIGSGSGTDFTLTISSVQAEDLADYFCLQHYNTPWTFGGGTKLEIKRTVAAPSVFI 125
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPK-PKITWYRDNEVIESG 432
PP G VV + YP+ K+ W DN ++SG
Sbjct: 126 FPP---SDEQLKSGTASVVCLLNNFYPREAKVQWKVDN-ALQSG 165
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIE 430
D + + G P PKITWYR+ + +E
Sbjct: 133 DSAQEIATCNSRNGNPAPKITWYRNGQRLE 162
>pdb|2G5B|A Chain A, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|C Chain C, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|E Chain E, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|G Chain G, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide
Length = 217
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + S + M K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGERVTMTCKSSQ---SLFNSKTRRNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTEFTLTISSVQAEDLAVYYCK 95
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP---TISWLKGSREITPSARHHI--- 341
+ P II + +A+ Q +C I P P SW + E S R+ +
Sbjct: 9 LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 68
Query: 342 -FAEGDTYTLIINSVYGVDADE-YVCRAVNKGG 372
EG TL I+++ D Y C A N G
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 281 SVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARH 339
S Q P AP R+ N + A+ +C P ++ WL ++ ++RH
Sbjct: 347 SFQCSAPFIMDAP------RDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRH 398
Query: 340 HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
+ + TL + V D Y C N G + A L + TA
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA 444
>pdb|3Q3G|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
Length = 220
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS SV K M+ K+ + ++ N +N+ A +Q PK I W +RE
Sbjct: 8 PSSLGVSVGEKVTMSCKSSQNLLYSSNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGTGSGTDFTLTISSVKAEDLAVYYCQ 95
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-- 470
TG P P I W +D V+ S ++ E + +L IR A DT Y +A G
Sbjct: 33 TGSPVPTILWRKDG-VLVSTQDSRIKQLE-NGVLQIRYAKLGDTGRYTCIASTPSGEATW 90
Query: 471 SAIVKIQISDRPDPPQFPT 489
SA +++Q P P PT
Sbjct: 91 SAYIEVQEFGVPVQPPRPT 109
>pdb|1Q9O|A Chain A, S45-18 Fab Unliganded
pdb|1Q9O|C Chain C, S45-18 Fab Unliganded
pdb|1Q9W|A Chain A, S45-18 Fab Pentasaccharide Bisphosphate Complex
pdb|1Q9W|C Chain C, S45-18 Fab Pentasaccharide Bisphosphate Complex
Length = 219
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
PSS + S K M+ K+ + L N+ +++ A +Q PK I W +RE
Sbjct: 7 FPSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKSYLAWYQQKPGQFPKLLIYW-AATRES 62
Query: 334 TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 63 GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1SBS|L Chain L, Crystal Structure Of An Anti-Hcg Fab
Length = 220
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
PSS + SV K M K+ + + L ++N + N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMTCKSSQSL--LYSSNQM-NYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVEAEDLAVYYCQ 95
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
+S ++T F+ GL G Y F + A G GPP K +P
Sbjct: 519 VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAP 566
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
A F+C ++ K T W K E+ PS R I G + L+I+ V D +Y
Sbjct: 26 AVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,810,847
Number of Sequences: 62578
Number of extensions: 824469
Number of successful extensions: 2917
Number of sequences better than 100.0: 212
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 2400
Number of HSP's gapped (non-prelim): 462
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)