Query psy12425
Match_columns 591
No_of_seqs 367 out of 2112
Neff 12.3
Searched_HMMs 46136
Date Fri Aug 16 18:58:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.3E-58 5.1E-63 441.3 54.7 547 13-587 60-724 (1051)
2 KOG3513|consensus 100.0 4.4E-45 9.4E-50 350.5 52.3 556 1-581 247-920 (1051)
3 KOG4221|consensus 100.0 1.9E-42 4.1E-47 330.7 43.3 553 7-589 51-625 (1381)
4 KOG4222|consensus 100.0 2.3E-42 5E-47 328.0 30.5 547 2-579 38-626 (1281)
5 KOG4221|consensus 100.0 1.9E-39 4.1E-44 310.2 44.0 533 2-573 244-811 (1381)
6 KOG4222|consensus 100.0 4.2E-30 9.1E-35 245.3 30.2 562 2-586 138-752 (1281)
7 KOG4194|consensus 99.9 2.3E-24 5E-29 192.9 21.4 222 247-482 574-799 (873)
8 PHA02785 IL-beta-binding prote 99.9 1.4E-21 3E-26 175.8 27.0 261 5-374 36-318 (326)
9 PHA02785 IL-beta-binding prote 99.9 2.5E-20 5.3E-25 167.7 25.9 209 247-470 82-318 (326)
10 KOG4194|consensus 99.9 4.9E-21 1.1E-25 171.9 20.7 265 290-562 501-786 (873)
11 cd05762 Ig8_MLCK Eighth immuno 99.8 1.4E-19 2.9E-24 130.9 13.3 93 1-93 6-98 (98)
12 KOG3515|consensus 99.8 5.5E-18 1.2E-22 160.4 24.7 554 6-589 18-604 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 5.7E-18 1.2E-22 141.9 17.3 159 300-469 30-213 (227)
14 cd05737 Ig_Myomesin_like_C C-t 99.8 1.3E-17 2.7E-22 120.0 11.6 85 1-85 7-92 (92)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.9E-17 1.3E-21 114.0 12.2 83 3-85 3-86 (86)
16 cd05762 Ig8_MLCK Eighth immuno 99.7 9.6E-17 2.1E-21 116.0 12.0 90 396-485 8-97 (98)
17 cd04975 Ig4_SCFR_like Fourth i 99.7 3.3E-16 7.2E-21 113.0 11.7 84 3-86 11-100 (101)
18 PF07679 I-set: Immunoglobulin 99.7 8.2E-16 1.8E-20 111.2 13.3 84 2-85 7-90 (90)
19 cd05747 Ig5_Titin_like M5, fif 99.7 4.6E-16 1E-20 112.0 11.8 82 2-83 10-91 (92)
20 cd05735 Ig8_DSCAM Eight immuno 99.7 6.4E-16 1.4E-20 109.4 12.1 83 10-92 1-88 (88)
21 cd05891 Ig_M-protein_C C-termi 99.7 5.1E-16 1.1E-20 111.1 11.3 85 1-85 7-92 (92)
22 cd04972 Ig_TrkABC_d4 Fourth do 99.7 7.2E-16 1.6E-20 110.5 11.9 84 2-85 7-90 (90)
23 cd05851 Ig3_Contactin-1 Third 99.7 5.4E-16 1.2E-20 109.9 9.8 81 2-86 8-88 (88)
24 cd05892 Ig_Myotilin_C C-termin 99.7 6.4E-16 1.4E-20 104.8 9.7 73 13-85 1-75 (75)
25 cd05852 Ig5_Contactin-1 Fifth 99.7 7E-16 1.5E-20 104.3 9.1 73 10-85 1-73 (73)
26 cd05865 Ig1_NCAM-1 First immun 99.7 1.4E-15 3.1E-20 108.9 11.0 85 1-85 6-95 (96)
27 cd05745 Ig3_Peroxidasin Third 99.7 6.6E-16 1.4E-20 105.9 8.8 74 9-85 1-74 (74)
28 cd05748 Ig_Titin_like Immunogl 99.7 2E-15 4.4E-20 103.8 10.8 74 12-85 1-74 (74)
29 cd05866 Ig1_NCAM-2 First immun 99.6 2.5E-15 5.3E-20 106.3 11.3 83 2-85 7-91 (92)
30 cd05893 Ig_Palladin_C C-termin 99.6 1.7E-15 3.8E-20 102.9 9.5 73 13-85 1-75 (75)
31 cd05728 Ig4_Contactin-2-like F 99.6 2.2E-15 4.8E-20 106.4 9.8 80 2-85 6-85 (85)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.7E-15 8E-20 107.9 10.7 83 4-86 12-100 (101)
33 cd05870 Ig5_NCAM-2 Fifth immun 99.6 4.4E-15 9.6E-20 108.3 10.8 84 2-85 8-98 (98)
34 cd05730 Ig3_NCAM-1_like Third 99.6 5.7E-15 1.2E-19 107.4 11.4 84 3-87 11-94 (95)
35 cd05857 Ig2_FGFR Second immuno 99.6 8.2E-15 1.8E-19 104.2 11.5 82 4-85 3-85 (85)
36 cd05854 Ig6_Contactin-2 Sixth 99.6 8.9E-15 1.9E-19 102.7 11.4 79 11-89 1-85 (85)
37 cd05868 Ig4_NrCAM Fourth immun 99.6 5.1E-15 1.1E-19 101.7 10.0 76 10-86 1-76 (76)
38 KOG3515|consensus 99.6 1.7E-13 3.7E-18 130.5 23.3 543 6-569 108-686 (741)
39 cd05743 Ig_Perlecan_D2_like Im 99.6 6.8E-15 1.5E-19 102.0 10.3 76 10-85 1-76 (78)
40 cd05867 Ig4_L1-CAM_like Fourth 99.6 8.2E-15 1.8E-19 101.1 10.5 74 10-85 1-75 (76)
41 cd04973 Ig1_FGFR First immunog 99.6 5.5E-15 1.2E-19 102.5 9.3 79 2-85 1-79 (79)
42 cd05744 Ig_Myotilin_C_like Imm 99.6 8.7E-15 1.9E-19 100.1 10.1 73 13-85 1-75 (75)
43 cd05863 Ig2_VEGFR-3 Second imm 99.6 5.2E-15 1.1E-19 97.0 8.5 66 13-86 1-66 (67)
44 cd05735 Ig8_DSCAM Eight immuno 99.6 1.5E-14 3.2E-19 102.4 11.3 83 403-485 1-88 (88)
45 cd05723 Ig4_Neogenin Fourth im 99.6 1.3E-14 2.9E-19 98.3 10.2 71 12-85 1-71 (71)
46 cd05851 Ig3_Contactin-1 Third 99.6 1.1E-14 2.4E-19 103.2 10.1 87 292-382 1-87 (88)
47 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.4E-14 3.1E-19 102.9 10.4 80 2-85 10-90 (91)
48 cd04968 Ig3_Contactin_like Thi 99.6 9.6E-15 2.1E-19 104.3 9.5 81 2-86 8-88 (88)
49 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 2.5E-14 5.4E-19 100.7 11.4 82 397-478 4-86 (86)
50 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.3E-14 2.8E-19 106.0 10.4 84 2-85 8-96 (96)
51 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.9E-14 4.1E-19 104.7 11.0 84 2-85 9-97 (97)
52 cd04969 Ig5_Contactin_like Fif 99.6 1.3E-14 2.9E-19 99.2 9.2 73 10-85 1-73 (73)
53 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.6E-14 3.6E-19 100.2 9.6 76 10-86 1-76 (76)
54 cd05737 Ig_Myomesin_like_C C-t 99.6 3.9E-14 8.4E-19 101.9 11.2 83 396-478 9-92 (92)
55 cd05855 Ig_TrkB_d5 Fifth domai 99.6 2.4E-14 5.3E-19 97.0 9.4 70 15-84 3-77 (79)
56 cd05747 Ig5_Titin_like M5, fif 99.6 3.1E-14 6.7E-19 102.5 10.5 89 292-380 3-91 (92)
57 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 3.7E-14 8.1E-19 98.0 10.0 71 15-85 3-80 (81)
58 PHA02826 IL-1 receptor-like pr 99.6 2.5E-13 5.4E-18 114.1 16.3 112 245-372 96-212 (227)
59 PF07679 I-set: Immunoglobulin 99.6 7.8E-14 1.7E-18 100.8 11.6 90 293-382 1-90 (90)
60 cd05853 Ig6_Contactin-4 Sixth 99.6 4E-14 8.6E-19 97.6 9.4 79 11-89 1-85 (85)
61 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.3E-14 4.9E-19 95.5 7.8 69 13-86 1-69 (70)
62 cd04976 Ig2_VEGFR Second immun 99.5 3.2E-14 6.9E-19 96.1 8.6 70 13-86 1-70 (71)
63 cd05760 Ig2_PTK7 Second immuno 99.5 4.9E-14 1.1E-18 97.2 9.7 73 13-87 1-76 (77)
64 cd04975 Ig4_SCFR_like Fourth i 99.5 5.6E-14 1.2E-18 101.5 10.2 84 396-479 11-100 (101)
65 cd04970 Ig6_Contactin_like Six 99.5 7.3E-14 1.6E-18 98.9 10.5 79 11-89 1-85 (85)
66 cd05892 Ig_Myotilin_C C-termin 99.5 4.6E-14 9.9E-19 95.7 9.0 73 406-478 1-75 (75)
67 cd05773 Ig8_hNephrin_like Eigh 99.5 1.1E-13 2.4E-18 102.4 11.8 101 383-483 2-109 (109)
68 cd05756 Ig1_IL1R_like First im 99.5 2.9E-14 6.3E-19 101.8 8.1 82 2-85 6-94 (94)
69 cd05773 Ig8_hNephrin_like Eigh 99.5 1.1E-13 2.5E-18 102.3 11.4 82 9-90 22-109 (109)
70 cd05736 Ig2_Follistatin_like S 99.5 6.7E-14 1.4E-18 96.8 9.5 74 13-86 1-74 (76)
71 cd05746 Ig4_Peroxidasin Fourth 99.5 3.3E-14 7.1E-19 95.8 7.7 68 13-83 1-68 (69)
72 cd04977 Ig1_NCAM-1_like First 99.5 1.1E-13 2.4E-18 99.1 10.8 83 2-85 7-92 (92)
73 cd05748 Ig_Titin_like Immunogl 99.5 9.1E-14 2E-18 95.5 10.0 74 405-478 1-74 (74)
74 cd05848 Ig1_Contactin-5 First 99.5 1.3E-13 2.9E-18 99.0 11.0 76 2-79 8-87 (94)
75 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 8.6E-14 1.9E-18 93.0 9.4 68 10-83 1-68 (69)
76 cd05852 Ig5_Contactin-1 Fifth 99.5 4.8E-14 1E-18 95.4 8.1 73 307-382 1-73 (73)
77 cd05850 Ig1_Contactin-2 First 99.5 2E-13 4.4E-18 98.2 11.6 80 2-83 8-92 (94)
78 cd05763 Ig_1 Subgroup of the i 99.5 7.2E-14 1.6E-18 96.3 8.7 74 13-86 1-75 (75)
79 cd05724 Ig2_Robo Second immuno 99.5 1.4E-13 3.1E-18 98.2 10.5 80 2-84 3-85 (86)
80 cd05876 Ig3_L1-CAM Third immun 99.5 6.7E-14 1.5E-18 94.8 8.3 70 13-85 1-70 (71)
81 cd05722 Ig1_Neogenin First imm 99.5 1.6E-13 3.4E-18 99.6 10.4 83 2-85 6-95 (95)
82 cd05745 Ig3_Peroxidasin Third 99.5 6.3E-14 1.4E-18 96.1 7.8 74 306-382 1-74 (74)
83 cd05856 Ig2_FGFRL1-like Second 99.5 1.2E-13 2.5E-18 97.9 9.3 80 4-85 3-82 (82)
84 cd05749 Ig2_Tyro3_like Second 99.5 1.3E-13 2.7E-18 94.9 8.6 70 2-79 5-75 (81)
85 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.9E-13 4E-18 99.0 9.8 84 396-479 11-100 (101)
86 cd05858 Ig3_FGFR-2 Third immun 99.5 1.7E-13 3.7E-18 98.0 9.5 76 10-85 1-89 (90)
87 cd05893 Ig_Palladin_C C-termin 99.5 1.8E-13 3.9E-18 93.0 8.9 73 406-478 1-75 (75)
88 cd05726 Ig4_Robo Fhird immunog 99.5 1.9E-13 4E-18 98.0 9.5 77 10-89 1-85 (90)
89 cd04972 Ig_TrkABC_d4 Fourth do 99.5 5.8E-13 1.3E-17 95.4 11.9 82 397-478 9-90 (90)
90 cd05854 Ig6_Contactin-2 Sixth 99.5 3.6E-13 7.8E-18 94.5 10.4 79 404-482 1-85 (85)
91 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.7E-13 1E-17 97.6 11.4 82 2-83 8-97 (98)
92 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 2.1E-13 4.6E-18 93.3 9.0 72 13-85 1-73 (74)
93 cd07693 Ig1_Robo First immunog 99.5 4.5E-13 9.7E-18 99.3 11.3 84 2-85 8-99 (100)
94 cd04974 Ig3_FGFR Third immunog 99.5 2.6E-13 5.6E-18 96.9 9.2 77 10-86 1-90 (90)
95 cd05764 Ig_2 Subgroup of the i 99.5 4.2E-13 9.2E-18 92.3 10.0 73 10-85 1-74 (74)
96 KOG0613|consensus 99.5 3E-12 6.4E-17 127.2 19.0 546 4-567 49-615 (1205)
97 cd05725 Ig3_Robo Third immunog 99.5 2.1E-13 4.5E-18 92.1 7.8 69 13-85 1-69 (69)
98 cd05743 Ig_Perlecan_D2_like Im 99.5 4.2E-13 9.1E-18 93.0 9.3 76 403-478 1-76 (78)
99 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.6E-13 5.6E-18 89.0 7.7 65 406-478 1-65 (67)
100 cd05870 Ig5_NCAM-2 Fifth immun 99.5 6.5E-13 1.4E-17 96.8 10.6 90 292-382 2-98 (98)
101 cd05866 Ig1_NCAM-2 First immun 99.5 8.9E-13 1.9E-17 93.3 10.8 85 296-381 4-90 (92)
102 cd07702 Ig2_VEGFR-1 Second imm 99.5 3.7E-13 8.1E-18 89.6 8.1 69 13-84 1-69 (72)
103 cd05750 Ig_Pro_neuregulin Immu 99.5 4.4E-13 9.4E-18 92.8 8.8 70 13-82 1-74 (75)
104 cd05730 Ig3_NCAM-1_like Third 99.5 8.4E-13 1.8E-17 96.0 10.7 82 397-480 12-94 (95)
105 cd05865 Ig1_NCAM-1 First immun 99.5 1.4E-12 3E-17 93.5 11.5 85 298-382 6-95 (96)
106 cd05744 Ig_Myotilin_C_like Imm 99.5 6.2E-13 1.4E-17 90.9 9.3 73 406-478 1-75 (75)
107 cd05891 Ig_M-protein_C C-termi 99.5 1.1E-12 2.4E-17 93.9 11.0 83 396-478 9-92 (92)
108 cd05733 Ig6_L1-CAM_like Sixth 99.5 3.3E-13 7.2E-18 93.0 8.0 67 13-79 1-71 (77)
109 cd04968 Ig3_Contactin_like Thi 99.5 1.1E-12 2.3E-17 93.8 10.7 86 293-382 2-87 (88)
110 cd05723 Ig4_Neogenin Fourth im 99.5 5.8E-13 1.3E-17 90.2 8.8 71 309-382 1-71 (71)
111 cd05731 Ig3_L1-CAM_like Third 99.5 4.4E-13 9.5E-18 91.6 8.3 70 13-85 1-70 (71)
112 cd07701 Ig1_Necl-3 First (N-te 99.4 1E-12 2.3E-17 94.3 10.2 84 1-85 3-95 (95)
113 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.3E-12 2.9E-17 95.0 10.9 91 292-382 2-97 (97)
114 cd05849 Ig1_Contactin-1 First 99.4 1.6E-12 3.4E-17 92.9 10.8 78 2-83 8-91 (93)
115 cd05874 Ig6_NrCAM Sixth immuno 99.4 8.4E-13 1.8E-17 90.6 9.1 71 13-83 1-76 (77)
116 cd05728 Ig4_Contactin-2-like F 99.4 4.8E-13 1E-17 94.4 8.1 82 297-382 4-85 (85)
117 cd05853 Ig6_Contactin-4 Sixth 99.4 8.4E-13 1.8E-17 91.0 9.0 79 404-482 1-85 (85)
118 cd05868 Ig4_NrCAM Fourth immun 99.4 9.4E-13 2E-17 90.4 8.8 74 403-478 1-75 (76)
119 cd05875 Ig6_hNeurofascin_like 99.4 1.5E-12 3.3E-17 89.3 9.7 68 13-80 1-72 (77)
120 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.1E-12 2.3E-17 89.1 8.8 72 407-478 2-78 (79)
121 cd05765 Ig_3 Subgroup of the i 99.4 1.1E-12 2.4E-17 92.4 9.3 75 10-85 1-81 (81)
122 cd04969 Ig5_Contactin_like Fif 99.4 8.1E-13 1.8E-17 90.3 8.1 73 307-382 1-73 (73)
123 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.8E-12 3.8E-17 94.7 10.3 90 292-382 2-96 (96)
124 cd05857 Ig2_FGFR Second immuno 99.4 2.1E-12 4.6E-17 91.8 10.3 80 399-478 5-85 (85)
125 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 1.6E-12 3.4E-17 89.9 9.1 72 407-478 2-80 (81)
126 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.8E-12 3.9E-17 89.4 9.4 74 403-478 1-75 (76)
127 cd05746 Ig4_Peroxidasin Fourth 99.4 8.4E-13 1.8E-17 88.9 7.3 68 406-476 1-68 (69)
128 KOG0196|consensus 99.4 1.7E-11 3.7E-16 115.4 18.2 214 63-280 305-531 (996)
129 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.6E-12 3.4E-17 90.2 8.7 75 403-478 1-75 (76)
130 cd04970 Ig6_Contactin_like Six 99.4 2.3E-12 5.1E-17 91.2 9.8 79 404-482 1-85 (85)
131 cd04979 Ig_Semaphorin_C Immuno 99.4 1.8E-12 3.8E-17 92.7 8.8 83 2-87 3-88 (89)
132 cd05752 Ig1_FcgammaR_like Frst 99.4 1.3E-12 2.8E-17 89.4 7.7 61 2-73 7-68 (78)
133 cd05873 Ig_Sema4D_like Immunog 99.4 6.4E-12 1.4E-16 87.0 10.7 69 2-74 3-71 (87)
134 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.7E-12 3.7E-17 86.5 7.6 68 406-478 1-68 (70)
135 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3.4E-12 7.4E-17 89.4 9.5 77 10-86 1-83 (84)
136 cd04976 Ig2_VEGFR Second immun 99.4 1.6E-12 3.5E-17 87.8 7.6 69 406-478 1-69 (71)
137 cd05742 Ig1_VEGFR_like First i 99.4 2.2E-12 4.7E-17 91.1 8.3 76 10-85 1-83 (84)
138 cd05736 Ig2_Follistatin_like S 99.4 3.6E-12 7.8E-17 88.1 8.9 74 406-479 1-74 (76)
139 cd07693 Ig1_Robo First immunog 99.4 6E-12 1.3E-16 93.2 10.7 91 292-382 1-99 (100)
140 cd04967 Ig1_Contactin First Ig 99.4 7.2E-12 1.6E-16 90.0 10.4 76 2-79 8-87 (91)
141 cd05882 Ig1_Necl-1 First (N-te 99.4 1.4E-11 3.1E-16 87.9 11.6 71 2-72 4-83 (95)
142 cd05729 Ig2_FGFR_like Second i 99.4 1.2E-11 2.7E-16 88.2 11.5 82 4-85 3-85 (85)
143 cd05895 Ig_Pro_neuregulin-1 Im 99.4 5.6E-12 1.2E-16 87.0 9.1 70 13-82 1-75 (76)
144 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 6.1E-12 1.3E-16 84.1 8.9 68 403-476 1-68 (69)
145 cd05876 Ig3_L1-CAM Third immun 99.4 4.2E-12 9.1E-17 86.0 8.1 70 310-382 1-70 (71)
146 cd05848 Ig1_Contactin-5 First 99.4 1.1E-11 2.3E-16 89.1 10.7 82 293-376 2-87 (94)
147 cd05760 Ig2_PTK7 Second immuno 99.4 4.4E-12 9.5E-17 87.4 8.3 71 406-478 1-74 (77)
148 cd05754 Ig3_Perlecan_like Thir 99.4 4.7E-12 1E-16 89.7 8.6 77 1-83 7-84 (85)
149 cd05740 Ig_CEACAM_D4 Fourth im 99.4 7.2E-12 1.6E-16 89.1 9.5 78 397-478 12-90 (91)
150 cd05763 Ig_1 Subgroup of the i 99.4 3.9E-12 8.4E-17 87.6 7.8 73 406-478 1-74 (75)
151 cd05898 Ig5_KIRREL3 Fifth immu 99.3 2.1E-11 4.5E-16 86.6 11.3 82 2-83 8-97 (98)
152 cd05858 Ig3_FGFR-2 Third immun 99.3 9.9E-12 2.1E-16 88.9 9.6 76 403-478 1-89 (90)
153 cd05849 Ig1_Contactin-1 First 99.3 1.3E-11 2.9E-16 88.1 10.2 80 293-376 2-86 (93)
154 cd05726 Ig4_Robo Fhird immunog 99.3 9.5E-12 2.1E-16 89.1 9.4 77 307-386 1-85 (90)
155 cd05850 Ig1_Contactin-2 First 99.3 2.4E-11 5.1E-16 87.5 10.9 80 293-376 2-87 (94)
156 cd05725 Ig3_Robo Third immunog 99.3 7.6E-12 1.6E-16 84.5 7.4 69 406-478 1-69 (69)
157 cd04973 Ig1_FGFR First immunog 99.3 1.3E-11 2.9E-16 85.5 8.7 77 300-381 2-78 (79)
158 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.3E-11 2.8E-16 84.4 8.4 70 406-478 1-73 (74)
159 cd05733 Ig6_L1-CAM_like Sixth 99.3 8E-12 1.7E-16 86.1 7.4 65 406-470 1-69 (77)
160 cd05764 Ig_2 Subgroup of the i 99.3 2.2E-11 4.7E-16 83.7 9.3 73 403-478 1-74 (74)
161 cd05757 Ig2_IL1R_like Second i 99.3 1.5E-11 3.3E-16 87.1 8.6 77 3-83 3-84 (92)
162 cd05731 Ig3_L1-CAM_like Third 99.3 1.1E-11 2.4E-16 84.6 7.7 70 406-478 1-70 (71)
163 cd04974 Ig3_FGFR Third immunog 99.3 1.8E-11 3.9E-16 87.4 8.8 76 403-478 1-89 (90)
164 cd05758 Ig5_KIRREL3-like Fifth 99.3 4.1E-11 9E-16 87.3 10.8 88 292-380 2-97 (98)
165 cd05750 Ig_Pro_neuregulin Immu 99.3 1.4E-11 3E-16 85.3 7.9 70 406-475 1-74 (75)
166 PF00041 fn3: Fibronectin type 99.3 9.8E-12 2.1E-16 88.9 7.3 83 483-566 1-85 (85)
167 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.7E-11 3.8E-16 84.1 7.9 66 406-471 1-70 (77)
168 cd04977 Ig1_NCAM-1_like First 99.3 5.2E-11 1.1E-15 85.2 10.5 83 298-381 6-91 (92)
169 cd05717 Ig1_Necl-1-3_like Firs 99.3 4.4E-11 9.4E-16 86.8 10.2 84 1-85 3-95 (95)
170 cd05856 Ig2_FGFRL1-like Second 99.3 2.8E-11 6.1E-16 85.6 9.0 77 400-478 6-82 (82)
171 cd05734 Ig7_DSCAM Seventh immu 99.3 1.8E-11 3.9E-16 85.2 7.7 70 13-85 1-79 (79)
172 cd05875 Ig6_hNeurofascin_like 99.3 2.6E-11 5.6E-16 83.2 8.3 65 406-470 1-69 (77)
173 cd05724 Ig2_Robo Second immuno 99.3 3.1E-11 6.7E-16 86.1 9.1 78 300-380 4-84 (86)
174 cd05722 Ig1_Neogenin First imm 99.3 4.9E-11 1.1E-15 86.5 9.4 82 297-381 4-94 (95)
175 cd07690 Ig1_CD4 First immunogl 99.2 5.1E-11 1.1E-15 84.2 8.5 72 5-76 2-90 (94)
176 smart00410 IG_like Immunoglobu 99.2 2.6E-10 5.7E-15 81.9 12.7 84 2-85 1-85 (86)
177 smart00409 IG Immunoglobulin. 99.2 2.6E-10 5.7E-15 81.9 12.7 84 2-85 1-85 (86)
178 cd05756 Ig1_IL1R_like First im 99.2 3.1E-11 6.7E-16 86.3 7.3 80 397-478 8-94 (94)
179 cd05765 Ig_3 Subgroup of the i 99.2 4.3E-11 9.4E-16 84.2 8.0 76 403-478 1-81 (81)
180 cd05749 Ig2_Tyro3_like Second 99.2 4E-11 8.7E-16 82.6 7.4 70 298-375 4-74 (81)
181 cd07702 Ig2_VEGFR-1 Second imm 99.2 6.8E-11 1.5E-15 78.8 8.2 65 310-377 1-65 (72)
182 cd05753 Ig2_FcgammaR_like Seco 99.2 4.5E-11 9.7E-16 83.4 7.7 73 4-84 8-82 (83)
183 cd05771 IgC_Tapasin_R Tapasin- 99.2 3.4E-10 7.3E-15 88.8 13.1 116 349-467 2-131 (139)
184 cd05727 Ig2_Contactin-2-like S 99.2 3.2E-11 6.9E-16 84.7 6.4 72 3-76 11-85 (96)
185 cd05860 Ig4_SCFR Fourth immuno 99.2 3.6E-10 7.8E-15 79.3 10.8 83 4-86 12-100 (101)
186 KOG0196|consensus 99.2 4.8E-10 1E-14 105.9 14.2 134 442-576 396-537 (996)
187 cd05871 Ig_Semaphorin_classIII 99.2 2.4E-10 5.1E-15 81.1 9.2 79 4-87 5-90 (91)
188 cd05881 Ig1_Necl-2 First (N-te 99.2 7E-10 1.5E-14 78.3 11.2 71 3-73 5-84 (95)
189 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.9E-10 4.1E-15 79.4 8.1 70 406-475 1-75 (76)
190 cd05742 Ig1_VEGFR_like First i 99.2 1.5E-10 3.2E-15 81.7 7.7 76 403-478 1-83 (84)
191 smart00408 IGc2 Immunoglobulin 99.1 2.4E-10 5.2E-15 76.2 7.8 63 9-75 1-63 (63)
192 PF13895 Ig_2: Immunoglobulin 99.1 4.3E-10 9.4E-15 79.2 9.3 72 4-85 8-80 (80)
193 cd04967 Ig1_Contactin First Ig 99.1 4.7E-10 1E-14 80.5 9.5 81 293-375 2-86 (91)
194 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 4.4E-10 9.6E-15 78.8 9.0 77 403-479 1-83 (84)
195 cd05734 Ig7_DSCAM Seventh immu 99.1 2.5E-10 5.4E-15 79.5 7.7 69 310-381 1-78 (79)
196 cd05752 Ig1_FcgammaR_like Frst 99.1 2E-10 4.4E-15 78.6 7.0 66 294-370 2-68 (78)
197 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.4E-09 3.1E-14 77.3 11.3 88 292-380 2-97 (98)
198 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 6E-10 1.3E-14 78.3 9.2 80 4-85 9-104 (104)
199 cd05862 Ig1_VEGFR First immuno 99.1 4.1E-10 9E-15 79.2 8.6 78 10-87 1-86 (86)
200 cd05845 Ig2_L1-CAM_like Second 99.1 2E-10 4.3E-15 80.5 6.8 71 3-75 11-83 (95)
201 cd05729 Ig2_FGFR_like Second i 99.1 1.2E-09 2.5E-14 77.9 10.7 80 399-478 5-85 (85)
202 cd05897 Ig2_IL1R2_like Second 99.1 6E-10 1.3E-14 78.6 7.9 73 4-77 4-81 (95)
203 cd07701 Ig1_Necl-3 First (N-te 99.1 1.4E-09 3E-14 78.1 9.8 81 300-381 5-94 (95)
204 cd05873 Ig_Sema4D_like Immunog 99.0 2.2E-09 4.7E-14 74.5 9.3 67 300-371 4-71 (87)
205 PF00047 ig: Immunoglobulin do 99.0 7.3E-10 1.6E-14 73.7 6.4 61 10-70 1-64 (64)
206 cd05754 Ig3_Perlecan_like Thir 99.0 2.2E-09 4.9E-14 75.9 8.8 76 299-380 8-84 (85)
207 cd05882 Ig1_Necl-1 First (N-te 99.0 7.5E-09 1.6E-13 73.9 11.4 70 396-465 5-83 (95)
208 cd05860 Ig4_SCFR Fourth immuno 99.0 5.3E-09 1.2E-13 73.4 9.8 85 395-479 10-100 (101)
209 cd05872 Ig_Sema4B_like Immunog 99.0 3.3E-09 7.1E-14 72.9 8.6 77 3-85 4-82 (85)
210 cd04979 Ig_Semaphorin_C Immuno 99.0 2.2E-09 4.8E-14 76.7 8.0 81 300-383 4-87 (89)
211 cd05757 Ig2_IL1R_like Second i 99.0 2.1E-09 4.6E-14 76.2 7.7 77 398-478 5-86 (92)
212 cd05771 IgC_Tapasin_R Tapasin- 99.0 1.2E-08 2.5E-13 80.1 12.3 116 248-371 2-131 (139)
213 TIGR00864 PCC polycystin catio 98.9 0.0002 4.2E-09 79.6 45.7 263 258-564 1754-2031(2740)
214 cd05885 Ig2_Necl-4 Second immu 98.9 6.3E-09 1.4E-13 70.4 7.7 65 13-77 2-69 (80)
215 cd04983 IgV_TCR_alpha_like Imm 98.9 8.9E-09 1.9E-13 77.2 8.9 73 2-74 5-93 (109)
216 PHA03376 BARF1; Provisional 98.9 1.2E-07 2.6E-12 73.2 14.6 123 301-426 20-162 (221)
217 cd05753 Ig2_FcgammaR_like Seco 98.9 1E-08 2.2E-13 71.5 7.9 65 302-374 9-74 (83)
218 cd05759 Ig2_KIRREL3-like Secon 98.9 1.8E-08 4E-13 70.6 8.8 73 12-84 1-81 (82)
219 cd05727 Ig2_Contactin-2-like S 98.9 8.9E-09 1.9E-13 72.5 6.8 73 396-470 11-86 (96)
220 cd05879 Ig_P0 Immunoglobulin ( 98.9 3.9E-08 8.5E-13 72.9 10.4 77 1-77 4-106 (116)
221 cd05880 Ig_EVA1 Immunoglobulin 98.8 2.8E-08 6E-13 74.4 9.5 76 1-76 4-104 (115)
222 smart00408 IGc2 Immunoglobulin 98.8 1.6E-08 3.5E-13 67.2 7.5 63 402-468 1-63 (63)
223 cd07690 Ig1_CD4 First immunogl 98.8 2E-08 4.4E-13 71.1 8.0 71 303-373 3-90 (94)
224 cd05714 Ig_CSPGs_LP Immunoglob 98.8 5E-08 1.1E-12 72.4 10.2 79 9-87 1-104 (106)
225 cd05899 IgV_TCR_beta Immunoglo 98.8 1.9E-08 4.2E-13 75.2 8.0 72 2-74 5-95 (110)
226 cd04980 IgV_L_kappa Immunoglob 98.8 2.9E-08 6.3E-13 73.6 8.9 72 2-73 7-93 (106)
227 cd05845 Ig2_L1-CAM_like Second 98.8 1.5E-08 3.3E-13 71.2 6.8 70 300-372 11-83 (95)
228 cd05900 Ig_Aggrecan Immunoglob 98.8 6E-08 1.3E-12 71.3 10.1 79 9-87 1-110 (112)
229 cd05862 Ig1_VEGFR First immuno 98.8 3E-08 6.6E-13 69.7 8.2 77 403-479 1-85 (86)
230 cd05717 Ig1_Necl-1-3_like Firs 98.8 5.4E-08 1.2E-12 70.6 9.7 80 300-380 5-93 (95)
231 PF13895 Ig_2: Immunoglobulin 98.8 5.9E-08 1.3E-12 68.2 9.3 70 302-381 9-79 (80)
232 smart00409 IG Immunoglobulin. 98.8 1.5E-07 3.3E-12 67.2 11.4 82 301-382 3-85 (86)
233 smart00410 IG_like Immunoglobu 98.8 1.5E-07 3.3E-12 67.2 11.4 82 301-382 3-85 (86)
234 KOG4258|consensus 98.8 3.1E-07 6.7E-12 87.9 16.0 136 99-235 497-655 (1025)
235 cd05713 Ig_MOG_like Immunoglob 98.8 8.4E-08 1.8E-12 70.4 10.0 76 10-85 1-99 (100)
236 PF00047 ig: Immunoglobulin do 98.8 3.9E-08 8.4E-13 65.3 7.4 61 307-367 1-64 (64)
237 cd05751 Ig1_LILRB1_like First 98.8 2.3E-08 4.9E-13 71.4 6.6 65 5-73 11-75 (91)
238 cd00099 IgV Immunoglobulin var 98.8 3.9E-08 8.5E-13 73.2 7.9 71 5-75 1-91 (105)
239 cd05877 Ig_LP_like Immunoglobu 98.8 1.2E-07 2.6E-12 70.4 10.4 79 9-87 1-104 (106)
240 cd05775 Ig_SLAM-CD84_like_N N- 98.8 5.9E-08 1.3E-12 70.2 8.3 78 8-85 2-96 (97)
241 cd04984 IgV_L_lambda Immunoglo 98.7 8.5E-08 1.8E-12 69.9 8.9 69 5-73 1-85 (98)
242 cd05871 Ig_Semaphorin_classIII 98.7 5.8E-08 1.3E-12 68.9 7.7 77 398-479 6-89 (91)
243 cd05881 Ig1_Necl-2 First (N-te 98.7 1.9E-07 4.1E-12 66.1 10.2 70 300-369 5-83 (95)
244 cd05715 Ig_P0-like Immunoglobu 98.7 9.4E-08 2E-12 72.1 9.1 75 1-75 4-104 (116)
245 cd00063 FN3 Fibronectin type 3 98.7 2E-07 4.4E-12 67.8 10.7 86 482-568 1-88 (93)
246 cd05878 Ig_Aggrecan_like Immun 98.7 1.7E-07 3.7E-12 69.4 10.0 79 9-87 1-108 (110)
247 cd05718 Ig1_PVR_like First imm 98.7 1.7E-07 3.7E-12 68.6 10.0 76 11-86 1-98 (98)
248 cd05774 Ig_CEACAM_D1 First imm 98.7 1E-07 2.2E-12 69.2 8.5 82 2-84 5-104 (105)
249 cd04982 IgV_TCR_gamma Immunogl 98.7 8.5E-08 1.8E-12 72.6 8.5 71 2-72 5-98 (116)
250 PF07686 V-set: Immunoglobulin 98.7 2.8E-07 6E-12 70.1 10.8 84 2-85 8-114 (114)
251 cd05741 Ig_CEACAM_D1_like Firs 98.7 1.5E-07 3.2E-12 68.0 8.3 74 10-84 1-91 (92)
252 PF00041 fn3: Fibronectin type 98.6 2.6E-07 5.6E-12 65.8 8.9 77 96-173 6-83 (85)
253 cd05897 Ig2_IL1R2_like Second 98.6 1.8E-07 3.8E-12 66.1 7.6 74 399-473 6-84 (95)
254 cd05872 Ig_Sema4B_like Immunog 98.6 2.8E-07 6.1E-12 63.4 7.9 69 300-374 4-72 (85)
255 PHA02987 Ig domain OX-2-like p 98.6 4.9E-07 1.1E-11 70.6 9.7 85 4-88 24-124 (189)
256 cd05885 Ig2_Necl-4 Second immu 98.6 2.4E-07 5.3E-12 62.7 7.1 64 406-470 2-69 (80)
257 cd05902 Ig_Neurocan Immunoglob 98.6 6.4E-07 1.4E-11 65.6 9.7 79 9-87 1-108 (110)
258 cd05759 Ig2_KIRREL3-like Secon 98.6 6.8E-07 1.5E-11 62.6 9.2 67 406-472 2-74 (82)
259 cd05712 Ig_Siglec_N Immunoglob 98.6 9.8E-07 2.1E-11 66.8 10.7 73 1-73 5-102 (119)
260 TIGR00864 PCC polycystin catio 98.6 0.003 6.6E-08 70.8 45.7 274 259-569 1841-2122(2740)
261 cd05888 Ig1_Nectin-4_like Frst 98.6 7.7E-07 1.7E-11 64.8 9.7 75 11-85 1-99 (100)
262 cd05883 Ig2_Necl-2 Second immu 98.5 1.3E-06 2.8E-11 59.4 9.4 74 13-86 2-80 (82)
263 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 8.1E-07 1.8E-11 62.8 8.3 79 301-381 9-103 (104)
264 cd05901 Ig_Versican Immunoglob 98.5 2.1E-06 4.6E-11 62.9 10.6 78 10-87 2-115 (117)
265 cd07706 IgV_TCR_delta Immunogl 98.5 6.2E-07 1.3E-11 67.8 8.2 72 2-73 6-94 (116)
266 cd05711 Ig_FcalphaRI Immunoglo 98.5 3.8E-07 8.2E-12 65.4 6.4 68 3-71 8-75 (94)
267 PF13927 Ig_3: Immunoglobulin 98.5 3E-07 6.6E-12 63.6 5.5 73 293-369 2-75 (75)
268 PF13927 Ig_3: Immunoglobulin 98.5 3.1E-07 6.7E-12 63.5 5.3 61 9-72 14-75 (75)
269 KOG0613|consensus 98.5 1.9E-05 4.1E-10 80.3 19.1 263 197-479 147-428 (1205)
270 cd05886 Ig1_Nectin-1_like Firs 98.4 2.7E-06 5.9E-11 61.1 9.7 76 11-86 1-99 (99)
271 cd04983 IgV_TCR_alpha_like Imm 98.4 1.8E-06 3.8E-11 64.7 9.0 72 300-371 6-93 (109)
272 cd07705 Ig2_Necl-1 Second immu 98.4 3.1E-06 6.6E-11 58.9 9.3 62 13-75 2-70 (83)
273 cd05751 Ig1_LILRB1_like First 98.4 1.5E-06 3.2E-11 62.1 7.9 74 292-370 2-75 (91)
274 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.8E-06 6.1E-11 61.6 9.4 76 10-85 1-96 (97)
275 cd05716 Ig_pIgR Immunoglobulin 98.4 1.6E-06 3.5E-11 63.3 8.0 70 5-74 2-87 (98)
276 cd05774 Ig_CEACAM_D1 First imm 98.4 3E-06 6.4E-11 61.6 9.0 69 301-372 7-94 (105)
277 cd05755 Ig2_ICAM-1_like Second 98.4 1.5E-06 3.3E-11 61.8 7.2 72 4-76 10-87 (100)
278 cd05899 IgV_TCR_beta Immunoglo 98.4 2.2E-06 4.8E-11 64.1 8.3 72 299-371 5-95 (110)
279 cd07700 IgV_CD8_beta Immunoglo 98.4 2.2E-06 4.8E-11 63.5 8.1 68 5-72 1-93 (107)
280 cd07694 Ig2_CD4 Second immunog 98.4 7.8E-06 1.7E-10 55.3 9.6 77 4-86 8-86 (88)
281 cd04980 IgV_L_kappa Immunoglob 98.4 4.4E-06 9.5E-11 62.0 9.5 72 299-370 7-93 (106)
282 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.8E-06 8.3E-11 58.5 8.6 63 13-76 2-70 (82)
283 cd05887 Ig1_Nectin-3_like Firs 98.3 7.2E-06 1.6E-10 58.3 9.5 76 11-86 1-96 (96)
284 cd00098 IgC Immunoglobulin Con 98.3 1.9E-06 4.2E-11 62.6 6.5 68 8-75 11-86 (95)
285 cd05884 Ig2_Necl-3 Second immu 98.3 4.3E-06 9.3E-11 58.0 7.8 62 13-74 2-69 (83)
286 cd00099 IgV Immunoglobulin var 98.3 4.5E-06 9.8E-11 62.1 8.7 70 303-372 2-91 (105)
287 cd05720 Ig_CD8_alpha Immunoglo 98.3 3.3E-06 7.2E-11 62.0 7.5 67 6-72 2-90 (104)
288 cd05714 Ig_CSPGs_LP Immunoglob 98.3 8.6E-06 1.9E-10 60.4 9.1 79 402-480 1-104 (106)
289 cd05900 Ig_Aggrecan Immunoglob 98.3 9.8E-06 2.1E-10 59.7 9.2 78 403-480 2-110 (112)
290 smart00060 FN3 Fibronectin typ 98.3 8E-06 1.7E-10 57.5 8.7 76 484-562 3-82 (83)
291 cd04982 IgV_TCR_gamma Immunogl 98.3 8.5E-06 1.8E-10 61.7 9.0 69 301-369 7-98 (116)
292 PHA03376 BARF1; Provisional 98.3 1.2E-05 2.6E-10 62.5 9.6 72 4-75 20-111 (221)
293 cd05877 Ig_LP_like Immunoglobu 98.2 1.6E-05 3.5E-10 59.0 9.5 78 306-383 1-103 (106)
294 cd05883 Ig2_Necl-2 Second immu 98.2 2.3E-05 5E-10 53.4 9.1 62 310-371 2-67 (82)
295 cd05713 Ig_MOG_like Immunoglob 98.2 1.9E-05 4.2E-10 57.8 9.7 37 346-382 63-99 (100)
296 cd04984 IgV_L_lambda Immunoglo 98.2 1.7E-05 3.6E-10 57.8 9.1 67 303-369 2-84 (98)
297 cd05718 Ig1_PVR_like First imm 98.1 3.3E-05 7.1E-10 56.5 9.5 75 308-382 1-97 (98)
298 cd04981 IgV_H Immunoglobulin ( 98.1 1.9E-05 4E-10 59.4 8.2 71 2-72 4-97 (117)
299 cd05741 Ig_CEACAM_D1_like Firs 98.1 2.2E-05 4.8E-10 56.5 8.0 65 307-374 1-83 (92)
300 cd05755 Ig2_ICAM-1_like Second 98.1 2.5E-05 5.5E-10 55.6 7.9 77 298-374 7-88 (100)
301 cd05775 Ig_SLAM-CD84_like_N N- 98.0 3.8E-05 8.3E-10 55.5 8.3 77 402-478 3-96 (97)
302 cd05889 Ig1_DNAM-1_like First 98.0 7.7E-05 1.7E-09 53.1 9.5 73 11-83 1-93 (96)
303 cd05711 Ig_FcalphaRI Immunoglo 98.0 3.2E-05 6.9E-10 55.5 7.6 68 301-369 9-76 (94)
304 cd05878 Ig_Aggrecan_like Immun 98.0 6.2E-05 1.3E-09 55.8 9.1 78 403-480 2-108 (110)
305 cd00096 Ig Immunoglobulin doma 98.0 3.8E-05 8.3E-10 52.4 7.7 62 13-74 1-66 (74)
306 cd05879 Ig_P0 Immunoglobulin ( 98.0 7.7E-05 1.7E-09 55.5 9.4 74 398-471 8-107 (116)
307 KOG4802|consensus 98.0 0.00035 7.6E-09 61.6 14.3 142 132-275 195-342 (516)
308 PF07686 V-set: Immunoglobulin 98.0 0.00017 3.6E-09 54.6 11.1 72 299-370 8-101 (114)
309 cd05880 Ig_EVA1 Immunoglobulin 98.0 9.7E-05 2.1E-09 55.4 9.4 74 396-469 6-104 (115)
310 cd05761 Ig2_Necl-1-4_like Seco 97.9 8.2E-05 1.8E-09 51.8 8.1 65 310-374 2-71 (82)
311 cd05772 IgC_SIRP Signal-regula 97.9 0.00012 2.7E-09 53.8 9.2 68 6-74 17-92 (111)
312 cd07705 Ig2_Necl-1 Second immu 97.9 0.00016 3.5E-09 50.3 9.3 64 406-470 2-72 (83)
313 smart00407 IGc1 Immunoglobulin 97.9 9.2E-05 2E-09 50.5 7.8 62 12-73 1-70 (75)
314 cd00098 IgC Immunoglobulin Con 97.9 6E-05 1.3E-09 54.7 7.2 69 401-469 11-87 (95)
315 PHA03271 envelope glycoprotein 97.9 0.014 3.1E-07 52.1 22.3 234 245-492 205-458 (490)
316 cd05715 Ig_P0-like Immunoglobu 97.9 0.00018 3.9E-09 54.3 9.6 73 300-372 6-104 (116)
317 KOG4367|consensus 97.8 1.7E-05 3.6E-10 69.8 4.1 81 493-575 450-530 (699)
318 cd07706 IgV_TCR_delta Immunogl 97.8 0.00013 2.9E-09 55.1 8.5 71 299-369 6-93 (116)
319 cd07694 Ig2_CD4 Second immunog 97.8 0.00045 9.7E-09 47.0 9.6 74 303-382 10-85 (88)
320 smart00406 IGv Immunoglobulin 97.8 9.5E-05 2.1E-09 51.8 7.0 59 12-70 1-81 (81)
321 cd05901 Ig_Versican Immunoglob 97.8 0.00067 1.5E-08 49.9 10.9 37 347-383 78-114 (117)
322 cd07700 IgV_CD8_beta Immunoglo 97.8 0.00022 4.7E-09 52.8 8.7 67 303-369 2-93 (107)
323 cd05884 Ig2_Necl-3 Second immu 97.8 0.00017 3.7E-09 50.0 7.4 64 310-373 2-71 (83)
324 cd05902 Ig_Neurocan Immunoglob 97.8 0.00033 7.1E-09 51.5 9.1 38 346-383 70-107 (110)
325 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00041 8.9E-09 50.5 9.4 74 405-478 2-99 (100)
326 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.00022 4.7E-09 52.4 7.9 66 304-369 3-90 (104)
327 cd05716 Ig_pIgR Immunoglobulin 97.7 0.00036 7.8E-09 50.8 8.9 68 303-370 3-86 (98)
328 PF08205 C2-set_2: CD80-like C 97.7 0.00021 4.6E-09 50.9 7.5 67 10-76 14-86 (89)
329 cd07692 Ig_CD3_epsilon Immunog 97.7 9.1E-05 2E-09 46.9 4.6 52 8-73 5-56 (65)
330 cd05886 Ig1_Nectin-1_like Firs 97.7 0.00063 1.4E-08 49.0 9.6 37 442-478 61-98 (99)
331 cd05766 IgC_MHC_II_beta Class 97.7 0.00032 6.9E-09 50.1 8.0 66 8-73 12-82 (94)
332 cd07699 IgC_L Immunoglobulin C 97.7 0.0001 2.2E-09 53.5 5.2 68 6-73 13-88 (100)
333 PHA02987 Ig domain OX-2-like p 97.7 0.0005 1.1E-08 54.3 9.3 85 397-481 24-124 (189)
334 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.0003 6.5E-09 50.1 7.3 69 7-75 11-87 (94)
335 cd05846 Ig1_MRC-OX-2_like Firs 97.6 0.00039 8.5E-09 50.4 8.0 76 307-382 1-96 (97)
336 cd05712 Ig_Siglec_N Immunoglob 97.6 0.00072 1.6E-08 51.2 9.6 71 300-370 7-102 (119)
337 cd00063 FN3 Fibronectin type 3 97.6 0.0018 3.9E-08 46.5 11.2 83 192-275 3-85 (93)
338 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00048 1E-08 49.4 7.7 65 10-74 14-83 (93)
339 cd05770 IgC_beta2m Class I maj 97.6 0.0006 1.3E-08 48.3 7.9 65 8-73 13-82 (93)
340 cd05769 IgC_TCR_beta T cell re 97.5 0.00046 1E-08 51.0 6.4 71 4-74 12-92 (115)
341 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.00094 2E-08 48.5 7.8 69 2-70 5-93 (115)
342 PHA03270 envelope glycoprotein 97.5 0.061 1.3E-06 48.7 20.3 231 245-490 180-427 (466)
343 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.0014 3E-08 47.0 8.5 65 307-371 14-83 (93)
344 PHA03273 envelope glycoprotein 97.4 0.055 1.2E-06 49.5 19.9 231 247-492 198-449 (486)
345 cd07697 IgC_TCR_gamma T cell r 97.4 0.00055 1.2E-08 48.7 6.2 67 4-72 10-83 (96)
346 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00045 9.8E-09 50.2 5.9 69 5-73 11-90 (102)
347 PF07654 C1-set: Immunoglobuli 97.4 0.00079 1.7E-08 47.1 6.8 63 9-74 7-77 (83)
348 cd05772 IgC_SIRP Signal-regula 97.4 0.003 6.5E-08 46.6 10.0 70 400-470 18-95 (111)
349 cd00096 Ig Immunoglobulin doma 97.4 0.00067 1.5E-08 45.9 6.5 62 406-467 1-66 (74)
350 cd05887 Ig1_Nectin-3_like Firs 97.4 0.0019 4.2E-08 46.0 8.7 74 405-478 2-95 (96)
351 cd05767 IgC_MHC_II_alpha Class 97.4 0.0011 2.4E-08 47.2 7.4 63 8-73 13-83 (94)
352 cd04981 IgV_H Immunoglobulin ( 97.3 0.002 4.4E-08 48.5 8.5 69 301-369 6-97 (117)
353 PF08205 C2-set_2: CD80-like C 97.3 0.0015 3.3E-08 46.5 7.5 66 307-372 14-85 (89)
354 PHA03269 envelope glycoprotein 97.3 0.13 2.9E-06 47.3 20.4 232 245-489 287-537 (566)
355 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0012 2.5E-08 42.3 5.5 51 8-72 4-54 (69)
356 cd05719 Ig2_PVR_like Second im 97.2 0.0031 6.7E-08 45.0 8.4 65 9-76 14-84 (95)
357 smart00060 FN3 Fibronectin typ 97.2 0.006 1.3E-07 42.4 9.9 72 96-170 7-81 (83)
358 smart00406 IGv Immunoglobulin 97.2 0.002 4.3E-08 45.0 6.8 58 309-366 1-80 (81)
359 cd07699 IgC_L Immunoglobulin C 97.1 0.0024 5.2E-08 46.3 7.2 68 304-371 14-89 (100)
360 smart00407 IGc1 Immunoglobulin 97.1 0.0036 7.9E-08 42.6 7.7 62 406-467 2-71 (75)
361 cd07703 Ig2_Nectin-2_like Seco 97.1 0.0041 8.8E-08 44.3 8.0 72 5-79 8-87 (95)
362 cd05766 IgC_MHC_II_beta Class 97.1 0.007 1.5E-07 43.3 9.3 67 305-371 12-83 (94)
363 cd07696 IgC_CH3 CH3 domain (th 97.1 0.0019 4.2E-08 46.2 6.4 30 5-34 9-41 (96)
364 PHA02633 hypothetical protein; 97.1 0.0024 5.3E-08 39.6 5.6 41 49-89 16-56 (63)
365 KOG4802|consensus 97.0 0.0091 2E-07 53.1 10.8 123 443-567 208-344 (516)
366 PF01108 Tissue_fac: Tissue fa 97.0 0.0044 9.5E-08 45.8 7.4 80 480-562 20-104 (107)
367 PF08204 V-set_CD47: CD47 immu 97.0 0.0012 2.6E-08 49.1 4.3 77 9-86 26-120 (130)
368 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0044 9.4E-08 43.6 6.5 66 7-73 12-85 (99)
369 cd05770 IgC_beta2m Class I maj 96.9 0.013 2.8E-07 41.6 8.9 66 305-370 13-82 (93)
370 cd05767 IgC_MHC_II_alpha Class 96.9 0.016 3.5E-07 41.3 9.3 65 306-370 14-83 (94)
371 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0026 5.7E-08 40.5 4.5 52 401-466 5-56 (65)
372 cd05889 Ig1_DNAM-1_like First 96.8 0.013 2.9E-07 41.8 8.5 72 405-476 2-93 (96)
373 PHA02982 hypothetical protein; 96.8 0.019 4.1E-07 45.9 9.7 119 301-428 33-173 (251)
374 cd05719 Ig2_PVR_like Second im 96.8 0.02 4.2E-07 41.0 9.1 64 308-374 16-85 (95)
375 cd05847 IgC_CH2_IgE CH2 domain 96.8 0.01 2.3E-07 42.3 7.5 67 306-372 13-87 (94)
376 PHA02982 hypothetical protein; 96.7 0.0045 9.7E-08 49.3 5.9 74 4-77 33-126 (251)
377 PF11465 Receptor_2B4: Natural 96.7 0.01 2.2E-07 41.9 6.9 84 3-86 6-107 (108)
378 KOG4258|consensus 96.7 0.042 9.1E-07 54.3 13.0 77 202-280 841-919 (1025)
379 cd07703 Ig2_Nectin-2_like Seco 96.6 0.019 4.2E-07 40.9 7.7 66 308-374 16-85 (95)
380 PF10179 DUF2369: Uncharacteri 96.5 0.5 1.1E-05 41.7 24.1 118 442-564 126-287 (300)
381 PF07654 C1-set: Immunoglobuli 96.5 0.027 5.8E-07 39.3 8.1 64 402-468 7-78 (83)
382 cd05769 IgC_TCR_beta T cell re 96.5 0.023 5E-07 42.2 7.8 71 304-374 15-95 (115)
383 PF03921 ICAM_N: Intercellular 96.4 0.17 3.8E-06 35.3 11.4 81 2-90 10-90 (91)
384 cd07691 Ig_CD3_gamma_delta Imm 96.4 0.011 2.4E-07 37.9 5.1 49 307-369 6-54 (69)
385 cd05768 IgC_CH4 CH4 domain (fo 96.4 0.013 2.8E-07 42.7 6.2 68 304-371 13-91 (102)
386 KOG4367|consensus 96.3 0.0049 1.1E-07 54.8 4.4 76 101-178 450-525 (699)
387 cd07696 IgC_CH3 CH3 domain (th 96.3 0.021 4.5E-07 40.9 6.6 70 302-371 9-86 (96)
388 KOG4152|consensus 96.2 1.1 2.3E-05 42.0 23.1 119 448-567 651-790 (830)
389 cd07704 Ig2_Nectin-3-4_like Se 96.2 0.04 8.8E-07 39.1 7.5 68 4-74 10-84 (97)
390 cd05721 IgV_CTLA-4 Immunoglobu 96.1 0.055 1.2E-06 39.5 8.0 66 302-367 8-93 (115)
391 cd04985 IgC_CH1 CH1 domain (fi 96.1 0.038 8.3E-07 39.5 7.2 64 9-73 15-86 (95)
392 KOG1480|consensus 96.1 0.0038 8.2E-08 60.3 2.7 173 291-470 23-209 (909)
393 cd04986 IgC_CH2 CH2 domain (se 96.0 0.017 3.7E-07 41.3 4.9 29 7-35 16-47 (99)
394 cd07697 IgC_TCR_gamma T cell r 95.9 0.061 1.3E-06 38.4 7.3 66 305-370 14-84 (96)
395 PF09294 Interfer-bind: Interf 95.9 0.017 3.8E-07 42.7 4.8 84 484-569 5-101 (106)
396 cd04985 IgC_CH1 CH1 domain (fi 95.9 0.12 2.6E-06 37.0 8.8 65 306-371 15-87 (95)
397 cd07689 Ig2_VCAM-1 Second immu 95.8 0.08 1.7E-06 37.4 7.4 67 400-466 12-85 (99)
398 cd04986 IgC_CH2 CH2 domain (se 95.8 0.043 9.3E-07 39.3 6.2 70 302-372 14-90 (99)
399 PHA03052 Hypothetical protein; 95.8 0.059 1.3E-06 34.2 5.9 36 1-36 3-41 (69)
400 cd07704 Ig2_Nectin-3-4_like Se 95.7 0.11 2.4E-06 37.0 7.8 68 303-371 12-84 (97)
401 PHA02914 Immunoglobulin-like d 95.5 1.8 4E-05 39.1 27.0 120 301-429 273-421 (500)
402 PHA03270 envelope glycoprotein 95.4 0.99 2.1E-05 41.3 14.6 79 347-430 181-264 (466)
403 KOG4597|consensus 95.4 0.022 4.8E-07 51.8 4.3 86 2-87 203-293 (560)
404 PHA02633 hypothetical protein; 95.1 0.081 1.8E-06 33.2 4.9 39 349-387 19-57 (63)
405 PHA03042 CD47-like protein; Pr 95.0 0.14 3.1E-06 43.3 7.7 70 10-86 31-105 (286)
406 KOG1480|consensus 95.0 0.01 2.2E-07 57.5 1.4 80 4-86 138-219 (909)
407 PF06328 Lep_receptor_Ig: Ig-l 94.6 0.24 5.3E-06 34.7 6.9 68 2-71 10-82 (89)
408 PHA03271 envelope glycoprotein 94.4 3.9 8.5E-05 37.4 22.2 129 335-468 192-336 (490)
409 PF08204 V-set_CD47: CD47 immu 94.3 0.19 4.2E-06 37.7 6.3 78 401-479 25-120 (130)
410 PF05790 C2-set: Immunoglobuli 94.3 1.1 2.4E-05 30.7 9.4 64 13-86 8-79 (80)
411 PF07354 Sp38: Zona-pellucida- 94.2 0.069 1.5E-06 45.0 4.1 47 23-72 11-58 (271)
412 KOG4597|consensus 94.0 0.22 4.8E-06 45.7 7.1 92 293-384 197-293 (560)
413 COG3401 Fibronectin type 3 dom 93.5 1.3 2.8E-05 39.3 10.6 115 449-568 129-247 (343)
414 PF07354 Sp38: Zona-pellucida- 93.2 0.17 3.7E-06 42.8 4.7 48 320-370 11-59 (271)
415 PHA03273 envelope glycoprotein 93.1 7.7 0.00017 36.3 20.9 78 348-430 198-280 (486)
416 COG4733 Phage-related protein, 93.1 4.1 8.9E-05 41.2 14.3 128 143-274 657-784 (952)
417 PF10179 DUF2369: Uncharacteri 92.9 6.5 0.00014 35.0 24.1 166 48-213 12-199 (300)
418 PF07495 Y_Y_Y: Y_Y_Y domain; 92.8 0.39 8.5E-06 31.5 5.4 39 525-565 18-56 (66)
419 PHA02914 Immunoglobulin-like d 92.7 1.8 4E-05 39.1 10.5 108 3-128 272-405 (500)
420 PF11465 Receptor_2B4: Natural 92.6 0.86 1.9E-05 32.6 6.8 71 405-477 29-105 (108)
421 KOG4152|consensus 92.4 1.1 2.3E-05 42.1 9.0 121 151-274 652-787 (830)
422 PHA03042 CD47-like protein; Pr 92.3 1.4 3E-05 37.6 8.8 70 402-478 30-104 (286)
423 KOG1026|consensus 92.0 0.4 8.6E-06 48.1 6.3 163 301-482 201-366 (774)
424 PHA03189 UL14 tegument protein 91.9 1.7 3.6E-05 37.7 8.9 75 2-77 59-159 (348)
425 PLN02533 probable purple acid 91.5 1.9 4E-05 41.4 10.1 69 481-555 40-121 (427)
426 PF09067 EpoR_lig-bind: Erythr 91.3 1.8 3.8E-05 31.5 7.5 79 481-562 7-95 (104)
427 PHA03269 envelope glycoprotein 90.9 15 0.00032 34.8 20.8 79 348-431 289-373 (566)
428 PF02010 REJ: REJ domain; Int 90.3 0.2 4.4E-06 48.7 2.7 212 349-564 149-390 (440)
429 PF02010 REJ: REJ domain; Int 90.2 0.75 1.6E-05 44.8 6.4 152 12-170 2-174 (440)
430 PF01108 Tissue_fac: Tissue fa 90.0 2.4 5.2E-05 31.3 7.5 65 102-168 33-101 (107)
431 PF06832 BiPBP_C: Penicillin-B 89.9 4.5 9.8E-05 28.5 8.6 56 12-79 31-86 (89)
432 COG4733 Phage-related protein, 88.7 3.7 8.1E-05 41.4 9.6 47 518-565 641-687 (952)
433 PRK14081 triple tyrosine motif 87.7 34 0.00073 34.6 48.2 238 301-562 395-653 (667)
434 PF11141 DUF2914: Protein of u 87.2 6.4 0.00014 25.8 7.5 59 24-85 6-65 (66)
435 PF06328 Lep_receptor_Ig: Ig-l 86.7 7.8 0.00017 27.3 7.8 64 301-366 12-80 (89)
436 PHA02865 MHC-like TNF binding 86.3 3.1 6.8E-05 37.5 7.0 21 12-32 216-238 (338)
437 PF05790 C2-set: Immunoglobuli 82.4 9.9 0.00022 26.1 6.7 19 350-368 45-63 (80)
438 PF06832 BiPBP_C: Penicillin-B 80.4 18 0.00038 25.5 8.0 56 405-472 31-86 (89)
439 PF03921 ICAM_N: Intercellular 80.1 18 0.00039 25.5 11.5 83 297-387 8-90 (91)
440 PHA02865 MHC-like TNF binding 78.5 8.1 0.00017 35.0 6.6 21 405-425 216-238 (338)
441 PHA03240 envelope glycoprotein 78.2 3.6 7.8E-05 33.5 3.9 73 4-76 32-130 (258)
442 PHA03052 Hypothetical protein; 78.2 7.8 0.00017 25.1 4.5 36 396-431 5-43 (69)
443 KOG4228|consensus 76.1 7 0.00015 41.2 6.2 107 458-571 1-107 (1087)
444 KOG4806|consensus 76.1 61 0.0013 29.4 17.6 114 448-565 288-438 (454)
445 PF00801 PKD: PKD domain; Int 75.8 20 0.00043 23.6 6.9 30 4-33 5-34 (69)
446 cd05890 Ig2_Nectin-1_like Seco 75.3 15 0.00032 26.0 5.7 70 308-380 21-96 (98)
447 cd05890 Ig2_Nectin-1_like Seco 74.1 16 0.00034 25.9 5.5 68 13-83 23-96 (98)
448 TIGR00868 hCaCC calcium-activa 72.4 1.4E+02 0.003 31.9 26.5 80 485-566 759-859 (863)
449 PHA03112 IL-18 binding protein 68.0 32 0.00069 26.5 6.6 27 7-33 35-63 (141)
450 KOG3632|consensus 67.3 32 0.00068 36.0 8.2 122 445-569 719-862 (1335)
451 smart00089 PKD Repeats in poly 65.7 39 0.00085 22.9 8.5 65 7-85 11-78 (79)
452 KOG4228|consensus 63.9 56 0.0012 35.0 9.5 65 65-134 1-65 (1087)
453 PF02440 Adeno_E3_CR1: Adenovi 62.8 21 0.00046 23.0 4.1 21 7-31 2-22 (63)
454 KOG3632|consensus 62.4 50 0.0011 34.7 8.6 173 88-274 671-857 (1335)
455 PF09294 Interfer-bind: Interf 62.2 51 0.0011 24.0 7.0 66 100-166 11-87 (106)
456 PF09067 EpoR_lig-bind: Erythr 56.8 75 0.0016 23.3 6.7 81 189-272 7-95 (104)
457 PF13754 Big_3_4: Bacterial Ig 56.8 44 0.00095 20.8 4.8 28 538-566 15-42 (54)
458 PF11141 DUF2914: Protein of u 56.3 55 0.0012 21.5 7.8 58 419-478 8-65 (66)
459 COG3401 Fibronectin type 3 dom 56.1 1.6E+02 0.0035 26.8 17.5 201 57-274 130-333 (343)
460 PF08329 ChitinaseA_N: Chitina 56.0 85 0.0018 24.2 7.0 72 494-573 36-107 (133)
461 PHA03189 UL14 tegument protein 55.4 1.5E+02 0.0034 26.4 9.2 74 301-374 61-159 (348)
462 PHA03283 envelope glycoprotein 55.3 37 0.0008 32.7 6.1 43 49-91 132-174 (542)
463 PLN02533 probable purple acid 51.2 87 0.0019 30.3 8.2 71 189-265 40-121 (427)
464 PF11344 DUF3146: Protein of u 50.5 12 0.00027 24.7 1.6 14 544-557 67-80 (80)
465 PF13473 Cupredoxin_1: Cupredo 48.6 92 0.002 22.7 6.3 21 2-22 34-54 (104)
466 PF00801 PKD: PKD domain; Int 47.6 79 0.0017 20.7 6.9 28 399-426 7-34 (69)
467 PF05955 Herpes_gp2: Equine he 45.1 1.6E+02 0.0035 23.7 12.2 58 409-466 113-178 (226)
468 PHA03112 IL-18 binding protein 44.9 1.5E+02 0.0032 23.1 6.7 69 401-469 36-121 (141)
469 PF01688 Herpes_gI: Alphaherpe 44.0 59 0.0013 26.0 4.8 29 50-78 123-151 (161)
470 smart00089 PKD Repeats in poly 41.7 1.1E+02 0.0024 20.7 8.0 65 402-478 13-78 (79)
471 PF09423 PhoD: PhoD-like phosp 40.9 1.2E+02 0.0025 29.9 7.5 20 537-556 64-83 (453)
472 TIGR03000 plancto_dom_1 Planct 39.7 57 0.0012 22.0 3.4 28 534-561 26-54 (75)
473 PF00127 Copper-bind: Copper b 39.3 1E+02 0.0022 22.2 5.3 29 2-32 16-44 (99)
474 PF09240 IL6Ra-bind: Interleuk 38.9 1.5E+02 0.0032 21.4 8.9 80 485-566 2-90 (99)
475 PF10342 GPI-anchored: Ser-Thr 38.5 1.4E+02 0.003 21.0 7.4 58 495-556 12-78 (93)
476 TIGR02656 cyanin_plasto plasto 38.1 1.3E+02 0.0029 21.6 5.7 15 2-16 16-30 (99)
477 COG3979 Uncharacterized protei 33.1 75 0.0016 26.2 4.1 86 481-575 4-89 (181)
478 PF12988 DUF3872: Domain of un 32.9 2.3E+02 0.005 21.9 7.9 20 1-20 38-57 (137)
479 PHA02579 7 baseplate wedge sub 31.1 1E+02 0.0022 31.6 5.2 66 486-556 9-84 (1030)
480 COG3794 PetE Plastocyanin [Ene 31.1 2.5E+02 0.0053 21.6 6.4 15 2-16 53-67 (128)
481 PF02124 Marek_A: Marek's dise 30.4 3.4E+02 0.0074 23.1 12.9 23 311-333 93-117 (211)
482 PF02124 Marek_A: Marek's dise 28.9 3.7E+02 0.0079 22.9 16.3 162 323-490 8-185 (211)
483 smart00635 BID_2 Bacterial Ig- 28.2 1.8E+02 0.004 19.9 4.9 35 2-36 9-46 (81)
484 PHA03283 envelope glycoprotein 28.2 2E+02 0.0043 28.2 6.3 40 441-480 131-170 (542)
485 TIGR03096 nitroso_cyanin nitro 27.9 2.8E+02 0.006 21.6 6.0 17 2-18 60-76 (135)
486 KOG1026|consensus 27.8 41 0.00089 34.6 2.1 74 5-88 202-275 (774)
487 PHA03286 envelope glycoprotein 27.0 2.2E+02 0.0047 27.3 6.2 36 51-86 127-163 (492)
488 PHA03290 envelope glycoprotein 26.7 1.5E+02 0.0033 26.8 5.0 38 49-86 127-164 (357)
489 PF14292 SusE: SusE outer memb 26.5 2.9E+02 0.0062 20.9 9.2 32 493-524 42-73 (122)
490 TIGR02375 pseudoazurin pseudoa 26.3 1.9E+02 0.0042 21.7 4.9 76 2-88 14-89 (116)
491 PF07353 Uroplakin_II: Uroplak 26.2 1.2E+02 0.0026 23.9 3.8 25 536-560 101-125 (184)
492 PF08329 ChitinaseA_N: Chitina 26.1 3.1E+02 0.0068 21.2 10.8 80 10-96 35-118 (133)
493 PHA03281 envelope glycoprotein 25.4 6.6E+02 0.014 25.0 9.0 121 206-328 246-394 (642)
494 PF11049 KSHV_K1: Glycoprotein 24.8 1.2E+02 0.0026 19.7 2.9 43 14-71 2-44 (71)
495 PHA03282 envelope glycoprotein 23.5 2.2E+02 0.0048 27.4 5.6 36 52-87 125-162 (540)
496 KOG0200|consensus 23.4 6E+02 0.013 26.3 9.4 114 349-474 14-147 (609)
497 PF03174 CHB_HEX_C: Chitobiase 23.2 2.4E+02 0.0052 18.9 5.7 58 304-375 12-69 (75)
498 COG5475 Uncharacterized small 23.2 2E+02 0.0043 17.9 4.0 29 442-472 16-44 (60)
499 PRK02710 plastocyanin; Provisi 23.0 3.4E+02 0.0073 20.5 6.1 15 2-16 46-60 (119)
500 PF05345 He_PIG: Putative Ig d 22.4 1.1E+02 0.0023 18.6 2.4 13 549-561 37-49 (49)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.3e-58 Score=441.32 Aligned_cols=547 Identities=23% Similarity=0.290 Sum_probs=401.4
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee-EEEEEEEEecCCC
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV-SGTFTINITGLPG 90 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~-~~~~~l~v~~~p~ 90 (591)
+.|.|.+.|+|.|+++|+|||..+......++...++ +|.|.+.. ..|.|.|+|.|.|..|.. +..+.|.....+.
T Consensus 60 v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~ 137 (1051)
T KOG3513|consen 60 VTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPK 137 (1051)
T ss_pred EEEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeeccccccc
Confidence 9999999999999999999999887664444444433 67788777 789999999999999998 5568888888777
Q ss_pred CCCCCc-ceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEE--EEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425 91 PPIGPL-DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC--ISTTCHDTTFIVQGLTEGQEYLFHVMAVN 167 (591)
Q Consensus 91 ~p~~~~-~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 167 (591)
.+.... .+....+..+.|.|.||. +.+-..|.+-........... -........+-+..+...+...|.|.|.+
T Consensus 138 F~~e~~~~v~v~eG~~~~L~C~pP~---~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~ 214 (1051)
T KOG3513|consen 138 FKKEERSPVEVEEGDGVVLPCNPPA---HFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATF 214 (1051)
T ss_pred CccccCCcEEEEeCCceEEeCCCCC---CCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEc
Confidence 664322 345567888999999988 333334444332221111000 11234566788888888888999999987
Q ss_pred cCCCCCCCCccCcccc-cCC---CCCCCCCCC--CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425 168 ENGMGPPLEGINPIKA-KSP---YDKPSPPGI--PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241 (591)
Q Consensus 168 ~~g~~~~~~~~~~~~~-~~~---~~~p~~~~~--~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 241 (591)
..-..........+.. ... ...|..+.. .......|..+.|.|.+-..+- ..+.++ ..+...+..-..
T Consensus 215 ~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~-P~i~W~-----k~~g~~~~~r~~ 288 (1051)
T KOG3513|consen 215 PSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPT-PQIKWR-----KVDGKPPPRRAT 288 (1051)
T ss_pred hhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCC-CcEEEE-----eCCCCCCCccee
Confidence 4322111111111111 000 011111111 1566678999999999853222 122222 223323333333
Q ss_pred eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC
Q psy12425 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321 (591)
Q Consensus 242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~ 321 (591)
.......|.|.++..+|+|.|+|.|.|..|.. .....+.+. .+|.++..+++..+..|+++.|.|.+.|.|.
T Consensus 289 ~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~---~~~~~v~v~-----a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~ 360 (1051)
T KOG3513|consen 289 YSNYGKVLKIPNVQYEDAGEYECIAENSRGSA---THSGHVTVY-----APPYWLQKPQDTEADTGSNVTLECKASGKPN 360 (1051)
T ss_pred eeccccEEEecccCcCCCeEEEEEEecccccc---eeeEEEEEe-----cCchhhcccceeEecCCCCeEEEEEecCCCC
Confidence 34456789999999999999999999999843 245566665 6899999999999999999999999999999
Q ss_pred CeeEEecCCccCCCCCc---eEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecC-CcccCCCCcccc
Q psy12425 322 PTISWLKGSREITPSAR---HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA-PKFNVPPRFRDT 397 (591)
Q Consensus 322 ~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~-p~~~~~~~~~~~ 397 (591)
|.+.|++||..+....+ +.+ .+| .|+|.++...|+|.|.|.|+|..|.....+.|.|... |.+... .....
T Consensus 361 p~v~WlkNg~pl~~~~r~~~~~i-~~g---~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~-p~~~~ 435 (1051)
T KOG3513|consen 361 PTVKWLKNGEPLEPAERDPRYKI-DDG---TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLN-PVERK 435 (1051)
T ss_pred CceEEeeCCeecCccCCCcceEE-eCC---EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCC-ccceE
Confidence 99999999999886665 544 333 7999999999999999999999999999999999987 554443 34455
Q ss_pred eeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC---------
Q psy12425 398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG--------- 468 (591)
Q Consensus 398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g--------- 468 (591)
..+..|..+.+.|...+.|.|.++|.+++..+..++++.+.. ..+|.|.+++.+|+|.|+|.|.|..|
T Consensus 436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~ 512 (1051)
T KOG3513|consen 436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLI 512 (1051)
T ss_pred EEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEE
Confidence 667899999999999999999999999988666667776653 33444444444444444444444444
Q ss_pred --------------------------------------------------------------------------------
Q psy12425 469 -------------------------------------------------------------------------------- 468 (591)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (591)
T Consensus 513 Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y 592 (1051)
T KOG3513|consen 513 VKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKY 592 (1051)
T ss_pred EecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceE
Confidence
Q ss_pred ---------ccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeee-
Q psy12425 469 ---------MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRF- 536 (591)
Q Consensus 469 ---------~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~- 536 (591)
+.+..+.+.|.++|.||.++.+...+.+++.|+|++.. |+.++|..|.++.+......|+.+. ....
T Consensus 593 ~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~ 671 (1051)
T KOG3513|consen 593 TCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNIT 671 (1051)
T ss_pred EEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECCCccc
Confidence 44444455556788999999999999999999999655 6667899999999999889998773 1111
Q ss_pred --eEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCce
Q psy12425 537 --TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPIS 587 (591)
Q Consensus 537 --~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~ 587 (591)
.+.++.+|.|...|+|||+|.|.+|.|++|.++..++|.+++|...|.++.
T Consensus 672 ~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~ 724 (1051)
T KOG3513|consen 672 GDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVK 724 (1051)
T ss_pred CccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCcccc
Confidence 357788999999999999999999999999999999999999999887663
No 2
>KOG3513|consensus
Probab=100.00 E-value=4.4e-45 Score=350.53 Aligned_cols=556 Identities=20% Similarity=0.242 Sum_probs=380.9
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~ 80 (591)
+|.++....|+.+.|.|.+.|+|.|+|.|+|.+... ...+.... ....+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 247 ~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~-~~~r~~~~--~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~ 323 (1051)
T KOG3513|consen 247 FPETETALKGQSVKLECFALGNPTPQIKWRKVDGKP-PPRRATYS--NYGKVLKIPNVQYEDAGEYECIAENSRGSATHS 323 (1051)
T ss_pred CCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC-CCcceeee--ccccEEEecccCcCCCeEEEEEEecccccceee
Confidence 366788999999999999999999999999987742 22233332 334589999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCC-ceEEEEeecCcceEEEcCCcCCcEE
Q psy12425 81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP-HWICISTTCHDTTFIVQGLTEGQEY 159 (591)
Q Consensus 81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y 159 (591)
+.|.|...|.....+..+....+..+++.|... |.+-..|.+........ .-..-........+.|.+|+..+.+
T Consensus 324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~----g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg 399 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKAS----GKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG 399 (1051)
T ss_pred EEEEEecCchhhcccceeEecCCCCeEEEEEec----CCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence 999999999888776677777888999999743 33444454433321111 0000012346678999999999999
Q ss_pred EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425 160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239 (591)
Q Consensus 160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 239 (591)
.|+|.|.|..|..-.+....+... .+..+..|..-.+....+..+.|.|.+-..+. +. +.+...+...-...
T Consensus 400 ~YQC~A~Nk~G~i~anA~L~V~a~--~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~--p~----~~W~k~~~~~~~~~ 471 (1051)
T KOG3513|consen 400 VYQCIAENKYGTIYANAELKVLAS--APVFPLNPVERKVMAVVGGTVTIDCKPFASPK--PK----VSWLKGGEKLLQSG 471 (1051)
T ss_pred EEEeeeecccceEeeeeEEEEEcc--CCCCCCCccceEEEEEeCCeEEEeeccCCCCc--ce----EEEEcCCcccccCc
Confidence 999999999998666554333322 12334444555667778899999999743222 11 22222222111112
Q ss_pred EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC 319 (591)
Q Consensus 240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~ 319 (591)
......+++|.|.+++.+|+|.|+|.|.|..|... ....+.+. .++.+...++...+..|+.+.|.|++.-.
T Consensus 472 r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~---~~~~L~Vk-----d~tri~~~P~~~~v~~g~~v~l~Ce~shD 543 (1051)
T KOG3513|consen 472 RIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE---STGNLIVK-----DATRITLAPSNTDVKVGESVTLTCEASHD 543 (1051)
T ss_pred eEEECCCCcEEecccCcccCcEEEEEEEcccCccc---eEEEEEEe-----cCceEEeccchhhhccCceEEEEeecccC
Confidence 23334678999999999999999999999999764 44555665 57888888899999999999999999755
Q ss_pred C--CCeeEEecCCccCCCC---CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC-
Q psy12425 320 P--KPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR- 393 (591)
Q Consensus 320 p--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~- 393 (591)
+ ...+.|.++|..+... ..+......+...|+|.++...|+|.|.|+|.......+..+.+.|..+|..+....
T Consensus 544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~ 623 (1051)
T KOG3513|consen 544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV 623 (1051)
T ss_pred CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE
Confidence 4 4578999999866432 233332222224699999999999999999998777777778888876653221000
Q ss_pred ------------------------------------cccceee---cCCC------------eEEEEEee-----eccCC
Q psy12425 394 ------------------------------------FRDTAYF---DKGE------------NVVVKIPF-----TGYPK 417 (591)
Q Consensus 394 ------------------------------------~~~~~~~---~~g~------------~~~l~c~~-----~~~p~ 417 (591)
+.....+ ..|+ .-.|+..+ .|.|.
T Consensus 624 ~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS 703 (1051)
T KOG3513|consen 624 DDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPS 703 (1051)
T ss_pred eeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCC
Confidence 0000000 1111 11122221 12222
Q ss_pred C-----------------------------eEEEeeCCeEeee--ccceEEEe---------------cCCeeEEEEec-
Q psy12425 418 P-----------------------------KITWYRDNEVIES--GGHFHVET---------------SERHAILTIRD- 450 (591)
Q Consensus 418 ~-----------------------------~v~W~~~~~~~~~--~~~~~~~~---------------~~~~~~l~i~~- 450 (591)
+ .|+|.--...... +-.|.+.. +-+...+.+.+
T Consensus 704 ~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~ 783 (1051)
T KOG3513|consen 704 PPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNE 783 (1051)
T ss_pred CCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCC
Confidence 2 3455321110011 11122111 11123444443
Q ss_pred -cCCCcceeEEEEEEcCCCccceEEEEEec----CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC
Q psy12425 451 -ASNVDTAPYRVVAENDLGMDSAIVKIQIS----DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525 (591)
Q Consensus 451 -~~~~~~g~y~c~a~n~~g~~~~~~~~~v~----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~ 525 (591)
..+...+..++.|.|..|.+..+..+.+. .||.+|..+.+...+.+.+.|+|++|..++| .+++|+|.|.....
T Consensus 784 st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG-~l~gY~v~Y~~~~~ 862 (1051)
T KOG3513|consen 784 STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNG-KLTGYEVKYWKINE 862 (1051)
T ss_pred CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCccCC-ccceeEEEEEEcCC
Confidence 44477889999999999999766666554 4678999999999999999999999888884 88999999987654
Q ss_pred Cce---EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccC
Q psy12425 526 SSW---IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSG 581 (591)
Q Consensus 526 ~~~---~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~ 581 (591)
..- ......+.++..|.||.+++.|.|.|+|.|.+|.|++|..... +|..++|+.
T Consensus 863 ~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~-tt~k~pPs~ 920 (1051)
T KOG3513|consen 863 KEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENV-TTKKAPPSQ 920 (1051)
T ss_pred CcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceec-cccCCCCcc
Confidence 321 1112367789999999999999999999999999999987655 666667775
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.9e-42 Score=330.66 Aligned_cols=553 Identities=18% Similarity=0.224 Sum_probs=383.1
Q ss_pred eecCCeEEEEEEeccC--CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC-----CCceEEEEEEEcC-Ceee-
Q psy12425 7 IPEGDNTKVKIFYAGD--QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK-----EDAGDYTVNLSNS-SGSV- 77 (591)
Q Consensus 7 v~~G~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-----~d~g~Y~c~~~n~-~g~~- 77 (591)
+.+|..+.|.|.+... +.+.|.|.|||..+......+.....++ +|.|.++.. -|+|.|+|.|.-. .|+.
T Consensus 51 ~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~ 129 (1381)
T KOG4221|consen 51 AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-SLYISSVLASKHNKVDEGVYQCLATVEDVGSIL 129 (1381)
T ss_pred cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC-ceeEeeecccccccccCceEEEEEEccccceee
Confidence 3789999999998543 4789999999988766522222222222 677777776 7899999999866 4554
Q ss_pred EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCc
Q psy12425 78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157 (591)
Q Consensus 78 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 157 (591)
+..+.|.+...+..-..+.......+.++.+.|..-. .+...-.+...+. -..|..-.....+..+.|.++++++
T Consensus 130 Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~----e~~p~i~w~kn~~-pl~~~~r~i~lpsG~L~I~~~qp~d 204 (1381)
T KOG4221|consen 130 SRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNA----EPVPTIMWLKNDQ-PLPLDSRVIVLPSGALEISGLQPSD 204 (1381)
T ss_pred cceEEEEecccCccccCccceeEecCCcEEEEEEEcC----ccCceeEEecccc-cccCCCcEEEcCCCcEEecccccCC
Confidence 5668888888777766666777778888888885322 2222111111111 0112111113456789999999999
Q ss_pred EEEEEEEEEccCCCCCCCCccCcccccCCC-----CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecC
Q psy12425 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPY-----DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG 232 (591)
Q Consensus 158 ~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~ 232 (591)
.|.|||.+.+...... +..........+. ..+..| -......|+.+.|.|.....+. +...|........
T Consensus 205 ~g~yrc~vt~g~~~r~-S~~a~ltv~s~~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~--p~v~Wlrng~~i~ 279 (1381)
T KOG4221|consen 205 TGEYRCVVTGGASQRT-SNEAELTVLSDPGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPK--PSVKWLRNGEKIS 279 (1381)
T ss_pred CceEEEEEecCCcCCc-cceeEEEecCCcccccceeeecCC--CccccccCCcEEEEEEecCCCC--CceEEeeCCeeee
Confidence 9999999997544332 2221111111110 011111 1234456888999998754332 2333332222221
Q ss_pred CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEE
Q psy12425 233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312 (591)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 312 (591)
-.. ..........|.|.+++..|.|.|+|+|.|..... ..+..+++. .+|.+...+....+.++..+.|
T Consensus 280 ~ds---~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i---dasaev~V~-----a~P~~~~~p~~l~A~e~~die~ 348 (1381)
T KOG4221|consen 280 VDS---YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI---DASAEVTVL-----APPGFTKAPTTLVAHESMDIEF 348 (1381)
T ss_pred ecc---eEEEEecccceEEeccccccCceEEEEecCCCccc---ccceEEEEE-----cCCCCCCCCcceeeeeccceeE
Confidence 111 11222346789999999999999999999843322 244556665 5688888888888999999999
Q ss_pred EEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCC-
Q psy12425 313 QCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP- 391 (591)
Q Consensus 313 ~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~- 391 (591)
.|.+.|.|.+.+.|+|+|..+..++..++...+. |.|..+...|.|.|.|.+.|..|.....+.+.+...|.....
T Consensus 349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~ 425 (1381)
T KOG4221|consen 349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD 425 (1381)
T ss_pred eCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence 9999999999999999998887766666654442 899999999999999999999999998888877655433211
Q ss_pred --CCcccceeecCCCeEEEEEeee-----ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEE
Q psy12425 392 --PRFRDTAYFDKGENVVVKIPFT-----GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464 (591)
Q Consensus 392 --~~~~~~~~~~~g~~~~l~c~~~-----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~ 464 (591)
+.......+..-+..-+.|.+. +.+.+.++|+........ .+. +........+++.++++...|.++|.|.
T Consensus 426 ~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~r-er~-~~tss~g~~~tv~nl~p~t~Y~~rv~A~ 503 (1381)
T KOG4221|consen 426 LLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVR-ERL-QNTSSPGIQVTVQNLSPLTMYFFRVRAK 503 (1381)
T ss_pred ccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchh-hhh-eeccCCceEEEeeecccceeEEEEEecc
Confidence 1112233333344444445443 344557777664322211 111 1122223778899999999999999999
Q ss_pred cCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCc
Q psy12425 465 NDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGL 544 (591)
Q Consensus 465 n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l 544 (591)
|..|....+..+.|..+|++|..+++...+..++.+.|++|.+.+ ++|++|++.|...+.+.|..+.+ +...++|++|
T Consensus 504 n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n-~~I~~yk~~ys~~~~~~~~~~~~-n~~e~ti~gL 581 (1381)
T KOG4221|consen 504 NEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGN-GPITGYKLFYSEDDTGKELRVEN-NATEYTINGL 581 (1381)
T ss_pred CcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCC-CCceEEEEEEEcCCCCceEEEec-CccEEEeecC
Confidence 999999999999999999888778888889999999999997655 49999999999886677666543 4479999999
Q ss_pred ccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCceee
Q psy12425 545 SPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLI 589 (591)
Q Consensus 545 ~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~~ 589 (591)
.+.+.|.|+|+|.|++|.|..|....+ .|....|+.||.++.+.
T Consensus 582 ~k~TeY~~~vvA~N~~G~g~sS~~i~V-~Tlsd~PsaPP~Nl~le 625 (1381)
T KOG4221|consen 582 EKYTEYSIRVVAYNSAGSGVSSADITV-RTLSDVPSAPPQNLSLE 625 (1381)
T ss_pred CCccceEEEEEEecCCCCCCCCCceEE-EeccCCCCCCCcceEEE
Confidence 999999999999999999999998755 66667999999888875
No 4
>KOG4222|consensus
Probab=100.00 E-value=2.3e-42 Score=328.04 Aligned_cols=547 Identities=22% Similarity=0.310 Sum_probs=381.1
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC--CceeEEEeCCe-EEEEEcc--cCCCCceEEEEEEEcCCee
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDY-IIIFIKE--IRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~-~~l~i~~--~~~~d~g~Y~c~~~n~~g~ 76 (591)
|.++.|..|+.++|.|.+.|.|+|++.|+|+|+.+..+ ...++...+.. .-|.+.. ....|.|.|.|.+.|..|.
T Consensus 38 p~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~ 117 (1281)
T KOG4222|consen 38 PHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGE 117 (1281)
T ss_pred chhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccce
Confidence 66788999999999999999999999999999755443 22233332221 2222211 1123899999999999998
Q ss_pred eEE-EEEEEEecCCC-CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCce---EEEEeecCcceEEEc
Q psy12425 77 VSG-TFTINITGLPG-PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW---ICISTTCHDTTFIVQ 151 (591)
Q Consensus 77 ~~~-~~~l~v~~~p~-~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~---~~~~~~~~~~~~~i~ 151 (591)
.-+ ...|.+...++ .-..|..+....+..+.+.|.+|. +.+.. .+.|...+...+ ...........+.|.
T Consensus 118 avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~---ghpep--tvSw~Kdg~pl~~~~~~~~~lisgG~LlIs 192 (1281)
T KOG4222|consen 118 AVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR---GHPEP--TVSWVKDGKPLDHYDVPIIALISGGNLLIS 192 (1281)
T ss_pred eeecCceEEEEEechhcccCcccccccccceeEEeccCCC---CCCCC--cceeecCCCccccccceeEEEecCCcEEEe
Confidence 733 35555554443 233445567778899999999877 22221 112222222222 111224567889999
Q ss_pred CCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec
Q psy12425 152 GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV 231 (591)
Q Consensus 152 ~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~ 231 (591)
+++..+.+.|.|.+.|..|.-....... ........-..|....+. -+..+.+.|.....+. +-..+.- ..
T Consensus 193 nvrksD~GtY~CVatNmvG~ReS~~A~l--sv~e~P~f~~rp~~~~v~--~g~~~~f~c~v~GdP~--P~Vrwkk---~~ 263 (1281)
T KOG4222|consen 193 NVRKSDEGTYACVATNMVGERESIPARL--SVQEKPWFWKRPKDLAVL--VGAAAEFDCRVGGDPQ--PTVRWKK---DD 263 (1281)
T ss_pred ccccCCCceeeeeeccccccccccccee--eeccCCccccccccceee--cccccccccccCCCCC--Cceeeec---cC
Confidence 9999999999999999999755543221 111111122222222221 2223555555432221 1111100 11
Q ss_pred CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEE
Q psy12425 232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQ 311 (591)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 311 (591)
+.....+.. ...+..++.|....+.|+|.|.|.|.|..|.-.. ...+++. .+|.+...+.+..+..|..++
T Consensus 264 ~~~P~~ry~-i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~a---sa~ltV~-----apP~f~kkp~dq~v~lg~~vt 334 (1281)
T KOG4222|consen 264 PSLPRSRYS-ILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEA---SATLTVQ-----APPSFGKKPRDQKVALGGTVT 334 (1281)
T ss_pred CCCCcccee-eeeccccccccccCCCcccceeeecccccccccc---ccceEEe-----cCcccccccCccccccCceEE
Confidence 111111111 1224478899999999999999999999987653 3445554 688898888888899999999
Q ss_pred EEEEEcCCCCCeeEEecCCccCC--------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425 312 FQCTITGCPKPTISWLKGSREIT--------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383 (591)
Q Consensus 312 l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 383 (591)
|.|.+.|.|.|.+.|.+.+.... ...+..+...+ +|+|.+++..|.|.|.|...+..|.......+.+.
T Consensus 335 ~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 335 FPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred eeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEE
Confidence 99999999999999998765332 22334444444 79999999999999999999988887665555554
Q ss_pred cC------C-cccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcc
Q psy12425 384 TA------P-KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT 456 (591)
Q Consensus 384 ~~------p-~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 456 (591)
.. | .+...+ ...++..+..+.|.|.+.+.|.+.+.|++++..+...+..... .....|.|.++...|.
T Consensus 412 ~~~~~~rPpp~i~~g~---~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~--~~~~~l~i~dl~~~Dt 486 (1281)
T KOG4222|consen 412 DVLTDSRPPPIIEQGP---ANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ--QEIGSLRIRDLKGPDT 486 (1281)
T ss_pred eeeccCCCCceeeecc---cccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce--eeeceeeeeeeecCCC
Confidence 32 1 122222 2344566899999999999999999999999887654432222 2357899999999999
Q ss_pred eeEEEEEEcCCCccceEEEEEecC---------------CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEee
Q psy12425 457 APYRVVAENDLGMDSAIVKIQISD---------------RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR 521 (591)
Q Consensus 457 g~y~c~a~n~~g~~~~~~~~~v~~---------------~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~ 521 (591)
|.|+|.|.+..|+.+.++.+.|.+ .|++|....+..++.++++|+|.+....++.++.+|++++.
T Consensus 487 G~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieaf 566 (1281)
T KOG4222|consen 487 GRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAF 566 (1281)
T ss_pred cceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHh
Confidence 999999999999999999988863 35677777888999999999999866556788999999876
Q ss_pred eC-CCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccc
Q psy12425 522 EH-PMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579 (591)
Q Consensus 522 ~~-~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p 579 (591)
.. -...|... .....+.+.|.+|.|++.|.|.|+|.|..|.+.+|..+..+++.++.+
T Consensus 567 s~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~ 626 (1281)
T KOG4222|consen 567 SPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADA 626 (1281)
T ss_pred hhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCCh
Confidence 44 45778776 567778999999999999999999999999999999888877776544
No 5
>KOG4221|consensus
Probab=100.00 E-value=1.9e-39 Score=310.23 Aligned_cols=533 Identities=17% Similarity=0.232 Sum_probs=367.3
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|.+.++.+|+.+.|+|.+.|.|.|+|.|.|||+.|..+. +++...+. ..|.|.+++..|+|.|+|+|.|..-...++.
T Consensus 244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasa 321 (1381)
T KOG4221|consen 244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASA 321 (1381)
T ss_pred CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEecc-cceEEeccccccCceEEEEecCCCcccccce
Confidence 678899999999999999999999999999999998776 56655543 3899999999999999999999877888899
Q ss_pred EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEec--CCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425 82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--SMPHWICISTTCHDTTFIVQGLTEGQEY 159 (591)
Q Consensus 82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~y 159 (591)
.|+|..+|..+..|..........+.+.|... +.++..+.+..... ....|.++.. ...+.|.++-..+.+
T Consensus 322 ev~V~a~P~~~~~p~~l~A~e~~die~ec~~~----g~p~p~v~w~kNgd~~ipsdy~ki~~---~~~lrIlgi~~sdeg 394 (1381)
T KOG4221|consen 322 EVTVLAPPGFTKAPTTLVAHESMDIEFECPVS----GKPIPTVRWYKNGDRIIPSDYFKIVG---GGNLRILGIVKSDEG 394 (1381)
T ss_pred EEEEEcCCCCCCCCcceeeeeccceeEeCCCC----CCCcceEEEEecCcccCcccceEecC---CCCcEEEEEecccch
Confidence 99999999999988777776666677776532 23555555544321 1234554432 222777777778888
Q ss_pred EEEEEEEccCCCCCCCCccCccccc---CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCcc
Q psy12425 160 LFHVMAVNENGMGPPLEGINPIKAK---SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAW 236 (591)
Q Consensus 160 ~~~~~a~n~~g~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~ 236 (591)
.|.|.+.|..|..........+... .....|..|..+.+...+...+.++|..|. ..+..+..|.+.+..... .|
T Consensus 395 ~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~-~r 472 (1381)
T KOG4221|consen 395 FYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGD-VR 472 (1381)
T ss_pred hhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCc-hh
Confidence 9999999999876554433222211 112345556666677777888999999877 445567778877776544 33
Q ss_pred EEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE
Q psy12425 237 QRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI 316 (591)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~ 316 (591)
.+...........++.+|.+...|.|+|.|.|..|.+..+ ..+.+..+.. +|.. ...+..-.++|.+
T Consensus 473 er~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS---~pLkV~t~pE--gp~~--------~~a~ats~~ti~v 539 (1381)
T KOG4221|consen 473 ERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESS---APLKVTTQPE--GPVQ--------LQAYATSPTTILV 539 (1381)
T ss_pred hhheeccCCceEEEeeecccceeEEEEEeccCcccCCccC---CceEEecCCC--CCcc--------ccccccCcceEEE
Confidence 3433333333788999999999999999999999988644 3333332221 2211 2333444556666
Q ss_pred cCCCCC----eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCC
Q psy12425 317 TGCPKP----TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392 (591)
Q Consensus 317 ~~~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~ 392 (591)
.+.|++ .|.|++....... ....+..+.+..+++|.++.+.+.|.|.|+|.|..|.+..+..+.|......+..|
T Consensus 540 ~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaP 618 (1381)
T KOG4221|consen 540 TWEPPPFGNGPITGYKLFYSEDD-TGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAP 618 (1381)
T ss_pred EecCCCCCCCCceEEEEEEEcCC-CCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCC
Confidence 666655 7889885444332 22334444555689999999999999999999999999999999988766655444
Q ss_pred CcccceeecCCCeEEEEEeeeccCCCeEEEee------CCeEee---------eccceEEE-ecCCeeEEEEeccCCCcc
Q psy12425 393 RFRDTAYFDKGENVVVKIPFTGYPKPKITWYR------DNEVIE---------SGGHFHVE-TSERHAILTIRDASNVDT 456 (591)
Q Consensus 393 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~------~~~~~~---------~~~~~~~~-~~~~~~~l~i~~~~~~~~ 456 (591)
... |+..+.......|.|.- +|.... ....+.-. ...+...+.+.+|++...
T Consensus 619 P~N------------l~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~ 686 (1381)
T KOG4221|consen 619 PQN------------LSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQ 686 (1381)
T ss_pred Ccc------------eEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCce
Confidence 321 22222333334455532 222111 11111111 222456677888999999
Q ss_pred eeEEEEEEcCCCccceEEEEEecCC--------CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce
Q psy12425 457 APYRVVAENDLGMDSAIVKIQISDR--------PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW 528 (591)
Q Consensus 457 g~y~c~a~n~~g~~~~~~~~~v~~~--------p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~ 528 (591)
|.+++.|.|..|.+..+..+...++ |.+|..+.+. ...+++.+.|.||...+ ..+.+|++.|++..+...
T Consensus 687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~-~~vrgY~ig~r~g~~~p~ 764 (1381)
T KOG4221|consen 687 YRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPN-IVVRGYKIGYRPGSGIPD 764 (1381)
T ss_pred EEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChh-hhhcceEEeeecccCCCC
Confidence 9999999999998877776666543 2344433333 36789999999986432 467899999975444332
Q ss_pred --EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425 529 --IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573 (591)
Q Consensus 529 --~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~ 573 (591)
..........|.|..|.++..|.++++|.|..|.|.+......++
T Consensus 765 ~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR 811 (1381)
T KOG4221|consen 765 TGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTR 811 (1381)
T ss_pred CccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeec
Confidence 122455667999999999999999999999999999886654433
No 6
>KOG4222|consensus
Probab=100.00 E-value=4.2e-30 Score=245.26 Aligned_cols=562 Identities=18% Similarity=0.193 Sum_probs=349.1
Q ss_pred CceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 2 PNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
|+++.+..|+.+.|+|.- .|.|-+.|+|.|+|+++...+.-.+. ..++ .|.|.++...|+|.|.|++.|..|..++
T Consensus 138 prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 138 PRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred cccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeeccccccccc
Confidence 567889999999999975 67899999999999998743222222 2232 7999999999999999999999998855
Q ss_pred E-EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcE
Q psy12425 80 T-FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQE 158 (591)
Q Consensus 80 ~-~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 158 (591)
. .+|+|.+.|..-..+.......+..+.+.|.... .+...-++.+....- .-....-..+..++.+....+.++
T Consensus 216 ~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~G----dP~P~Vrwkk~~~~~-P~~ry~i~~d~qtl~i~r~tp~de 290 (1281)
T KOG4222|consen 216 IPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGG----DPQPTVRWKKDDPSL-PRSRYSILDDTQTLRIDRVTPTDE 290 (1281)
T ss_pred ccceeeeccCCccccccccceeecccccccccccCC----CCCCceeeeccCCCC-CccceeeeeccccccccccCCCcc
Confidence 4 9999999998766554444445555777775432 222222332211111 000011122336677888899999
Q ss_pred EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec-CC---C
Q psy12425 159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV-GS---D 234 (591)
Q Consensus 159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~-~~---~ 234 (591)
+.|-|.|.|..|.-..+.. .++..+...-..|.. ....-+..+++.|+....+. +..-|..+.... .. .
T Consensus 291 g~y~C~a~n~vG~l~asa~---ltV~apP~f~kkp~d--q~v~lg~~vt~pc~~~gnP~--PavfW~keg~q~llf~~~p 363 (1281)
T KOG4222|consen 291 GTYVCPAENLVGGLEASAT---LTVQAPPSFGKKPRD--QKVALGGTVTFPCETLGNPP--PAVFWLKEGSQDLLFSASP 363 (1281)
T ss_pred cceeeeccccccccccccc---eEEecCcccccccCc--cccccCceEEeeeecCCCCC--cceEEeccCcceecccCCC
Confidence 9999999999987666543 222222211111211 12234667888888753322 222222211100 00 0
Q ss_pred ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEE
Q psy12425 235 AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC 314 (591)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c 314 (591)
.-............|+|.+++..|.|.|.|...+..|..........+.+.. ....+|.+...+.+.+...+..+.|.|
T Consensus 364 ~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~-~~rPpp~i~~g~~nQtl~v~s~a~l~c 442 (1281)
T KOG4222|consen 364 PSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLT-DSRPPPIIEQGPANQTLPVGSTASLPC 442 (1281)
T ss_pred CCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeec-cCCCCceeeecccccccccCcccccCh
Confidence 0000111122345899999999999999999998888665432222222221 113466777777788888899999999
Q ss_pred EEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcc------
Q psy12425 315 TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF------ 388 (591)
Q Consensus 315 ~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~------ 388 (591)
.+.+.|.+.+.|.+++-.+.......... ..++|+|.++...|.|.|+|.|.+..|....++.|.|...-.-
T Consensus 443 ~atg~P~p~i~wl~dg~~v~~~d~~~s~~--~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~ 520 (1281)
T KOG4222|consen 443 SATGAPTPNISWLKDGCNVMNPDSRISQQ--EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRC 520 (1281)
T ss_pred hhhCCCCCCchhhhcccccccCCccccee--eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccC
Confidence 99999999999999987776544322221 1237999999999999999999999999999999988653221
Q ss_pred ------cCCCCcccceee-cCCCeEEEEEeeecc--CCC----eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCc
Q psy12425 389 ------NVPPRFRDTAYF-DKGENVVVKIPFTGY--PKP----KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455 (591)
Q Consensus 389 ------~~~~~~~~~~~~-~~g~~~~l~c~~~~~--p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 455 (591)
+.++. ....+ ..+..+.|.+..... --| .+..+-.+ + .......-..-..+...|+.+.+..
T Consensus 521 ~D~S~~pS~p~--~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~--~-~etw~~ta~~v~~t~~~I~gL~P~~ 595 (1281)
T KOG4222|consen 521 EDPSALPSPPG--TPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPD--L-GETWQTTAGRVKTTTYAIRGLKPNL 595 (1281)
T ss_pred CChhhCCCCCC--CCccccCCCceEEecccCCCCCCccccchhHHHHhhhh--h-cccccccccccccceeeecCcCccc
Confidence 11111 11111 233444444432211 000 00000000 0 0001111112246788999999999
Q ss_pred ceeEEEEEEcCCCccce-EEEEEecCCC-CCC---------------CCCe---eeeecCCeeEEEeeccccCCCcceee
Q psy12425 456 TAPYRVVAENDLGMDSA-IVKIQISDRP-DPP---------------QFPT---VEDIGHDSLALVWRAPIWDGGSNITN 515 (591)
Q Consensus 456 ~g~y~c~a~n~~g~~~~-~~~~~v~~~p-~~p---------------~~~~---~~~~~~~~v~l~W~~p~~~~~~~~~~ 515 (591)
.|.+.|+|.|..|-+.- ...-.+...| ++. ..++ ....+..++.+.|..+...+...|.+
T Consensus 596 sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g 675 (1281)
T KOG4222|consen 596 SYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQG 675 (1281)
T ss_pred eeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccc
Confidence 99999999999996521 1111122111 111 1111 22356788999999876555668899
Q ss_pred EEEEeeeCCC--CceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcC---CCCCCCcceEEeccccccCCCCCc
Q psy12425 516 YIVEKREHPM--SSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGR---SDPSTTSDLITTYGELLSGMEAPI 586 (591)
Q Consensus 516 y~v~~~~~~~--~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~---~~~s~~~~~~~t~~~~p~~~~~~~ 586 (591)
|+|.|+.... .+|... -.....++.+.+|.|++.|+|.++-+-..|. |.+|.... +.|.+++|+.++..+
T Consensus 676 ~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~-alt~e~~PSapp~~~ 752 (1281)
T KOG4222|consen 676 YRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKT-ALTLEEPPSAPPQGV 752 (1281)
T ss_pred eEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCccccc-ccccccCCCCCCCCc
Confidence 9999997654 344443 2334468889999999999999999888554 55565544 456667888887664
No 7
>KOG4194|consensus
Probab=99.93 E-value=2.3e-24 Score=192.92 Aligned_cols=222 Identities=21% Similarity=0.432 Sum_probs=183.4
Q ss_pred ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEE
Q psy12425 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW 326 (591)
Q Consensus 247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W 326 (591)
..+.+.++...++|.|+|.+.|..|...... ..+++. ..|.|...|.+.+...|+...|.|.+.|.|.|.|.|
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk--~KltV~-----~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIaw 646 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQK--AKLTVN-----QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAW 646 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhhe--eEEEee-----ccCccccCcccceeecccceeeeeeccCCCCcceee
Confidence 4678999999999999999999999765433 444443 679999999999999999999999999999999999
Q ss_pred ecCCcc-CCCC--CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCC
Q psy12425 327 LKGSRE-ITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKG 403 (591)
Q Consensus 327 ~~~~~~-~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g 403 (591)
.|+|.. .+.. .+..+..+.+ .+.|.+++.+|.|.|+|.|.|.+|..+..+++.|...|.+..|. ....+..|
T Consensus 647 qkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL---~~~~V~~g 721 (873)
T KOG4194|consen 647 QKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPL---EDQLVVVG 721 (873)
T ss_pred hhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccc---cceEEEec
Confidence 997665 4433 3444444443 78999999999999999999999999999999999998877663 34556789
Q ss_pred CeEEEEEeeeccCC-CeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425 404 ENVVVKIPFTGYPK-PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482 (591)
Q Consensus 404 ~~~~l~c~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p 482 (591)
+++.|.|.+.+.|. |.+.|+|.+.++.-..+..+ .++..-|++.+...+|+|.|+|...|..|.....+.+.+...+
T Consensus 722 et~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 722 ETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 99999999999887 99999999988865443332 3467888999999999999999999999988777666665444
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.91 E-value=1.4e-21 Score=175.76 Aligned_cols=261 Identities=16% Similarity=0.188 Sum_probs=164.0
Q ss_pred eeeecCCeEEEEEEe-----ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 5 LYIPEGDNTKVKIFY-----AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
..+.+|+.+.|.|.+ .|.|.+++.|+|+|... .+ .+ ...+...|.|.++..+|+|.|+|.+.|..|....
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~-~~-~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DR-II-PIDNGSNMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ce-EE-EccCCceEEEcccCcccCeEEEEEEECCCcceEE
Confidence 346789999999997 68889999999998532 11 12 2223346889999999999999999999988888
Q ss_pred EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 159 (591)
Q Consensus 80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y 159 (591)
++.|+|.....+...+ . .|. ..+..+...
T Consensus 111 s~~L~V~~~~~~~~~~---------------~-----------~~~-------------------------~~~~~g~~~ 139 (326)
T PHA02785 111 SLNLTIVSVSESNIDL---------------I-----------SYP-------------------------QIVNERSTG 139 (326)
T ss_pred EEEEEEEecCCCccce---------------e-----------ecc-------------------------ceecccCcE
Confidence 8888887542110000 0 000 001123334
Q ss_pred EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425 160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239 (591)
Q Consensus 160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 239 (591)
.+.|...... ...+..+.|+|.... .+ .. .+.
T Consensus 140 ~i~C~~~~~~------------------------------~~~~~~~~i~W~k~~-----~~----------~~---~r~ 171 (326)
T PHA02785 140 EMVCPNINAF------------------------------IASNVNADIIWSGHR-----RL----------RN---KRL 171 (326)
T ss_pred EEECCChhhc------------------------------ccCCCCceEEEccCC-----cc----------CC---cce
Confidence 4555311000 001222678886421 10 00 011
Q ss_pred EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC-CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC
Q psy12425 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS-SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG 318 (591)
Q Consensus 240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~ 318 (591)
. ......|.|.++...|.|.|+|.|.|..|..... .....+.+.. ...+|.+.. +....+..|+.+.|.|.+.|
T Consensus 172 ~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~~~-p~~~~~~~G~~v~L~C~a~g 246 (326)
T PHA02785 172 K--QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTMQL-PEGVVTSIGSNLTIACRVSL 246 (326)
T ss_pred E--ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec--cCCCceecC-CCcEEecCCCcEEEEEEEEC
Confidence 1 1134679999999999999999999987643211 1122233322 234555433 35666778999999999999
Q ss_pred CCCC---eeEEecCCccCCCCC-----ceEEEE-----eC---CeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 319 CPKP---TISWLKGSREITPSA-----RHHIFA-----EG---DTYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 319 ~p~~---~v~W~~~~~~~~~~~-----~~~~~~-----~~---~~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
.|.+ .+.|+++|..+.... ++.... ++ ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus 247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 8864 799999998775421 222211 00 13479999999999999999999987443
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=2.5e-20 Score=167.72 Aligned_cols=209 Identities=17% Similarity=0.206 Sum_probs=143.0
Q ss_pred ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEE-----EcCCCC
Q psy12425 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-----ITGCPK 321 (591)
Q Consensus 247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~-----~~~~p~ 321 (591)
..+.|.++...|+|.|+|.|.|..|... .+..+++... .+|.+.....+..+.+|..+.|.|. ..+.|.
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~---~s~~L~V~~~---~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~ 155 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDM---MSLNLTIVSV---SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN 155 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceE---EEEEEEEEec---CCCccceeeccceecccCcEEEECCChhhcccCCCC
Confidence 3577889999999999999999876533 2334444321 1122221223344678999999997 246788
Q ss_pred CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee----eEEEEec---CCcccCCCCc
Q psy12425 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK----AELIIMT---APKFNVPPRF 394 (591)
Q Consensus 322 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~----~~l~v~~---~p~~~~~~~~ 394 (591)
+.+.|+++.. + ...++..... ..|.|.+++.+|.|.|+|.|.|..|..... +.|.|.. +|.+..+
T Consensus 156 ~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p--- 227 (326)
T PHA02785 156 ADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP--- 227 (326)
T ss_pred ceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC---
Confidence 9999987542 2 2334333222 279999999999999999999988865432 3444432 2222222
Q ss_pred ccceeecCCCeEEEEEeeeccCCC---eEEEeeCCeEeeecc-----ceEEEec--------CCeeEEEEeccCCCccee
Q psy12425 395 RDTAYFDKGENVVVKIPFTGYPKP---KITWYRDNEVIESGG-----HFHVETS--------ERHAILTIRDASNVDTAP 458 (591)
Q Consensus 395 ~~~~~~~~g~~~~l~c~~~~~p~~---~v~W~~~~~~~~~~~-----~~~~~~~--------~~~~~l~i~~~~~~~~g~ 458 (591)
....+..|+.+.|.|.+.|.|.+ .+.|++||..+.... ++..... .....|+|.+++.+|.|.
T Consensus 228 -~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~ 306 (326)
T PHA02785 228 -EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATT 306 (326)
T ss_pred -CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCee
Confidence 34556779999999999998864 899999998875321 2222111 014679999999999999
Q ss_pred EEEEEEcCCCcc
Q psy12425 459 YRVVAENDLGMD 470 (591)
Q Consensus 459 y~c~a~n~~g~~ 470 (591)
|+|.|.|..|..
T Consensus 307 Y~C~A~n~~~~~ 318 (326)
T PHA02785 307 FTCMAFTIPSIS 318 (326)
T ss_pred eEEEEEeccCce
Confidence 999999988543
No 10
>KOG4194|consensus
Probab=99.88 E-value=4.9e-21 Score=171.91 Aligned_cols=265 Identities=19% Similarity=0.216 Sum_probs=193.2
Q ss_pred cCCCeEEeeccccceeccccEEEEEEEcC--CCCCeeEEecCCccCCC-----CCceEEE-EeC-------CeEEEEEcc
Q psy12425 290 AKAPEIIVPLRNANAIQNHNAQFQCTITG--CPKPTISWLKGSREITP-----SARHHIF-AEG-------DTYTLIINS 354 (591)
Q Consensus 290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~~~~~~-----~~~~~~~-~~~-------~~~~l~i~~ 354 (591)
...|.+...|..+.+..|+.++|+|.+.+ ..+.++.|.++...... ...+... .+| -...|.+.+
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 45788888888888899999999999977 56678999997653221 1111100 111 123689999
Q ss_pred eecccceEEEEEEEeCCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeE-eeec
Q psy12425 355 VYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV-IESG 432 (591)
Q Consensus 355 ~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~-~~~~ 432 (591)
+...|+|.|.|.+.|..|.. +..+.+.|...|.+...| .......|..+.|.|.+.|.|.|+|.|.++|.. ....
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP---~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA 657 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTP---EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA 657 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeeccCccccCc---ccceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence 99999999999999999988 667899999999988766 345678899999999999999999999998765 5544
Q ss_pred cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCee-eeecCCeeEEEeeccccCCCc
Q psy12425 433 GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGS 511 (591)
Q Consensus 433 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~ 511 (591)
...++.+......+.|.++..+|.|.|+|.|.|.+|.-+..+.++|.+.|.....+.- .-+-..++.|.|.....
T Consensus 658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~---- 733 (873)
T KOG4194|consen 658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA---- 733 (873)
T ss_pred hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC----
Confidence 5556666667788999999999999999999999999999999999988754333321 12346788899985221
Q ss_pred ceeeEEEEeeeCCCCc-eE--EeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425 512 NITNYIVEKREHPMSS-WI--RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562 (591)
Q Consensus 512 ~~~~y~v~~~~~~~~~-~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~ 562 (591)
+.. =++.|...+..- .. .........+++.+..-.+.+.|+|.-.|..|.
T Consensus 734 ~a~-pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 734 PAD-PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred CCC-ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 110 122222222110 00 112334457777777788889999999888884
No 11
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.83 E-value=1.4e-19 Score=130.88 Aligned_cols=93 Identities=22% Similarity=0.403 Sum_probs=87.0
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~ 80 (591)
.|+++.+.+|+++.|.|.+.|.|++++.|+|+|..|..+.++++...+..+.|.|.++.++|+|.|+|.|.|..|....+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 37889999999999999999999999999999999988878888877778899999999999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q psy12425 81 FTINITGLPGPPI 93 (591)
Q Consensus 81 ~~l~v~~~p~~p~ 93 (591)
+.|.|.+.|.+|.
T Consensus 86 ~~l~V~~~P~pP~ 98 (98)
T cd05762 86 VNLTVVDKPDPPA 98 (98)
T ss_pred EEEEEecCCCCCC
Confidence 9999999998873
No 12
>KOG3515|consensus
Probab=99.82 E-value=5.5e-18 Score=160.41 Aligned_cols=554 Identities=13% Similarity=0.115 Sum_probs=296.3
Q ss_pred eeecCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EEEEE
Q psy12425 6 YIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTFTI 83 (591)
Q Consensus 6 ~v~~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~~l 83 (591)
-+.+|+.|.|.|.+.++| .+.|.|++.++.+. .++... ...+|......++.-+.|.|++.|..+... ....+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l 92 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATI---ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL 92 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccc---cCCceeeecchhhhhhhhhhhhcccccCceecceee
Confidence 578999999999998854 56999999988776 333222 123788888888889999999999966553 34667
Q ss_pred EEecCCCCCCCCcceEEecCceEEEEecC-CCCCCCcceeeEEEEEEecCCC------ceEEEEee-cCcceEEEcCCcC
Q psy12425 84 NITGLPGPPIGPLDVSEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMP------HWICISTT-CHDTTFIVQGLTE 155 (591)
Q Consensus 84 ~v~~~p~~p~~~~~~~~~~~~~~~l~w~~-p~~~~~~~~~~y~~~~~~~~~~------~~~~~~~~-~~~~~~~i~~l~~ 155 (591)
.+...|..-..........+..+.+.|.. ........+.++.......... .+...... .....+.+.....
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk 172 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK 172 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence 77776654433344556677888999942 2211111222222222221111 11122222 2345566666677
Q ss_pred CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCC-CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC
Q psy12425 156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI-PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD 234 (591)
Q Consensus 156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~ 234 (591)
+..+.|+|.|.+..-..........+....+......... ..-....+..+.|.|............+|.....-...
T Consensus 173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~- 251 (741)
T KOG3515|consen 173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES- 251 (741)
T ss_pred cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh-
Confidence 8889999999985433333222222222211111111111 11223457778888865433333334433221111000
Q ss_pred ccEEEEeeecCCceeeecCcc------cCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCe-EEeeccccceecc
Q psy12425 235 AWQRVNVAICAPSQINIPNLI------EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE-IIVPLRNANAIQN 307 (591)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~------~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g 307 (591)
.... ......++.... ....-...|.+.| .+ ..+..+.+. .+|. ............|
T Consensus 252 --sl~~---~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~-----~~~~~tav~-----~~~~~~~Ist~~~~ls~g 315 (741)
T KOG3515|consen 252 --SLLS---QEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL-----AASQITAVQ-----VKPTAVPISTSDSGLSSG 315 (741)
T ss_pred --hccc---CCCCCCcccccccccccccchhhhhhccccC-cc-----ccceeeecc-----cccccccccCcccccccc
Confidence 0000 011112222222 2233345588877 11 122223322 1121 1122233447788
Q ss_pred ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE--EeC--CeEEEEEcceecccceEEEEEEEeCCcceeee--eEE
Q psy12425 308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF--AEG--DTYTLIINSVYGVDADEYVCRAVNKGGVKSTK--AEL 380 (591)
Q Consensus 308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~--~~l 380 (591)
....+.|.. ..+|...+.|+++...........-. ..+ ....+.+......+.|.|+|.|.+..+....+ ..+
T Consensus 316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l 395 (741)
T KOG3515|consen 316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL 395 (741)
T ss_pred cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence 999999886 55788899999965443322211110 011 12356677788899999999999987655444 334
Q ss_pred EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeE
Q psy12425 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY 459 (591)
Q Consensus 381 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 459 (591)
.+..+|....... ..+...+.+.....-.+.+. +.+.+.|.+++..+.....-............+.++...|.|.|
T Consensus 396 ~~l~~p~~L~~~~--~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y 473 (741)
T KOG3515|consen 396 PVLPSPAFLVRHK--TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSY 473 (741)
T ss_pred cccCCchhhhhcc--cceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcc
Confidence 4444443322111 12222334443333333344 46689999998888765554444444455555667889999999
Q ss_pred EEEEEcCCCccceEEEEEecCCCC-CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe------c
Q psy12425 460 RVVAENDLGMDSAIVKIQISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV------G 532 (591)
Q Consensus 460 ~c~a~n~~g~~~~~~~~~v~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~------~ 532 (591)
.|.|.|..|.....+.+.+.+.|. -+....+.....+++.+.+... ++. .-..+.-..+.......+.. .
T Consensus 474 ~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~--~~~-~~~~m~~~~r~ge~~~~~~~~~~~~~~ 550 (741)
T KOG3515|consen 474 GLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQD--EQP-QDQQMHHEPRSGEPPSDQIDQDAPQQQ 550 (741)
T ss_pred eeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeecc--ccc-cchhhhcccccCCCCcccccccccccc
Confidence 999999999998888877776553 3333444445566655555421 121 11222222221111110110 1
Q ss_pred eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCceee
Q psy12425 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLI 589 (591)
Q Consensus 533 ~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~~ 589 (591)
......+.+.+-.....|++.|.+-| .++++.-..+.+...+.-....+|..+.
T Consensus 551 ~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~pA~~~~~l~~~s~~~v~~~tp~~~~ 604 (741)
T KOG3515|consen 551 LMAHAQLLVSGNSSLQASETACVVDG---SSPPAGLSLVLKAYSALIVTVRTPNMYT 604 (741)
T ss_pred cCCccceeecccccccccceEEeecC---CCCccccceEEEecccccccccCCceee
Confidence 12334666666666777888888866 4555555555555544444444555443
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.79 E-value=5.7e-18 Score=141.94 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=117.3
Q ss_pred cccceeccccEEEEEEEcCCC-----------CCeeEEecCCccC--C-CCCc--eE-EE-E--eCCeEEEEEcceeccc
Q psy12425 300 RNANAIQNHNAQFQCTITGCP-----------KPTISWLKGSREI--T-PSAR--HH-IF-A--EGDTYTLIINSVYGVD 359 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p-----------~~~v~W~~~~~~~--~-~~~~--~~-~~-~--~~~~~~l~i~~~~~~d 359 (591)
....+.+|+++.|.|.+.+.| .+.+.|++++... . .+.+ .. +. . ......|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 345678999999999987644 4589999986431 1 0111 00 00 0 1123489999999999
Q ss_pred ceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeeccc
Q psy12425 360 ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESGGH 434 (591)
Q Consensus 360 ~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~~~ 434 (591)
+|.|+|.|.|..|.....+.|.|..++ ....+..|+.+.|.|.+.+ .|.|+++|++++..+....+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~---------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT---------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC---------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 999999999988887777777774321 1234578999999999863 46799999999999876666
Q ss_pred eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 435 ~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
+.+. .....|.|.+++.+|+|.|+|.|....+.
T Consensus 181 ~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 181 IQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 5544 34568999999999999999999986543
No 14
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.76 E-value=1.3e-17 Score=120.01 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=76.6
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
||+.+++.+|+++.|.|.+.|.|.|.+.|+|+|..+....++++... +...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 68999999999999999999999999999999999988877777654 44578999999999999999999999999888
Q ss_pred EEEEEE
Q psy12425 80 TFTINI 85 (591)
Q Consensus 80 ~~~l~v 85 (591)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 887764
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.74 E-value=5.9e-17 Score=114.00 Aligned_cols=83 Identities=17% Similarity=0.404 Sum_probs=74.7
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
+.+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... .++.+....+.+.|.|.++.++|+|.|+|.|.|..|....++
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 5788999999999999999999999999999999764 467776666778999999999999999999999999998888
Q ss_pred EEEE
Q psy12425 82 TINI 85 (591)
Q Consensus 82 ~l~v 85 (591)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8765
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=9.6e-17 Score=116.03 Aligned_cols=90 Identities=29% Similarity=0.477 Sum_probs=83.5
Q ss_pred cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
....+..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+...+..+.|+|.++...|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 34567899999999999999999999999999998777888877777899999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q psy12425 476 IQISDRPDPP 485 (591)
Q Consensus 476 ~~v~~~p~~p 485 (591)
|.|.++|.+|
T Consensus 88 l~V~~~P~pP 97 (98)
T cd05762 88 LTVVDKPDPP 97 (98)
T ss_pred EEEecCCCCC
Confidence 9999999988
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.70 E-value=3.3e-16 Score=113.00 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=71.6
Q ss_pred ceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC-----CeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 3 NALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD-----DYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
..+++.+|+++.|.|.+.| .|+|.+.|+|||..|....+..+...+ ...+|.|.++.++|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3688999999999999999 899999999999999865443333221 2478999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy12425 77 VSGTFTINIT 86 (591)
Q Consensus 77 ~~~~~~l~v~ 86 (591)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9998888875
No 18
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.69 E-value=8.2e-16 Score=111.18 Aligned_cols=84 Identities=30% Similarity=0.511 Sum_probs=80.0
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|.++.+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+...+...+|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 67899999999999999999999999999999999999999999988999999999999999999999999999999988
Q ss_pred EEEE
Q psy12425 82 TINI 85 (591)
Q Consensus 82 ~l~v 85 (591)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8876
No 19
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.69 E-value=4.6e-16 Score=111.99 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=74.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+.......+|.|.+++.+|+|.|.|.|.|..|..+..+
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 89 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF 89 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence 67899999999999999999999999999999998877788877666678999999999999999999999999988877
Q ss_pred EE
Q psy12425 82 TI 83 (591)
Q Consensus 82 ~l 83 (591)
.|
T Consensus 90 ~l 91 (92)
T cd05747 90 TL 91 (92)
T ss_pred Ee
Confidence 65
No 20
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=6.4e-16 Score=109.42 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=71.8
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEe--CC--eEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVL--DD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~--~~--~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
|+.+.|.|.+.|.|++.+.|+|++..+..+ .++.+... +. ..+|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 899999999999999999999999988654 35554432 22 26899999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy12425 85 ITGLPGPP 92 (591)
Q Consensus 85 v~~~p~~p 92 (591)
|.+.|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99998876
No 21
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.68 E-value=5.1e-16 Score=111.12 Aligned_cols=85 Identities=24% Similarity=0.435 Sum_probs=75.0
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
+|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+.... ...+|.|.+++.+|+|.|.|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 688999999999999999999999999999999998877766655433 3458999999999999999999999999988
Q ss_pred EEEEEE
Q psy12425 80 TFTINI 85 (591)
Q Consensus 80 ~~~l~v 85 (591)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 888765
No 22
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.68 E-value=7.2e-16 Score=110.47 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=72.6
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|+++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++..+|.|.|+|.|.|..|....++
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 67788999999999999999999999999999988665443344444567999999999999999999999999998888
Q ss_pred EEEE
Q psy12425 82 TINI 85 (591)
Q Consensus 82 ~l~v 85 (591)
.|.|
T Consensus 87 ~L~v 90 (90)
T cd04972 87 QVTV 90 (90)
T ss_pred EEeC
Confidence 8764
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=5.4e-16 Score=109.94 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=69.4
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|.++.+.+|+.+.|.|.+.|.|.|.++|+|++..+....++ ... ...|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMS--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecC--CCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 56788999999999999999999999999999887654332 222 24799999999999999999999999998888
Q ss_pred EEEEe
Q psy12425 82 TINIT 86 (591)
Q Consensus 82 ~l~v~ 86 (591)
.|.|.
T Consensus 84 ~l~V~ 88 (88)
T cd05851 84 RVYVQ 88 (88)
T ss_pred EEEEC
Confidence 88773
No 24
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=6.4e-16 Score=104.75 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=62.3
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|.|.|.+.|.|.|.|.|+|+|..+..+ .++.+...+ +..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998753 555554433 3358999999999999999999999999998888765
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=7e-16 Score=104.34 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+++.|.|.+.|.|.|.|.|+|++..+..+.++.+.. + .+|.|.+++++|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--~-g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--D-GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--C-CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7899999999999999999999999887766665532 2 37999999999999999999999999999888764
No 26
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.66 E-value=1.4e-15 Score=108.86 Aligned_cols=85 Identities=24% Similarity=0.303 Sum_probs=69.9
Q ss_pred CCceeeeecCCeEEEEEEeccCCC-ceEEEEE-CCEEeec-CCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCC-e
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQP-MEVSLTK-NGRVVQS-DDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSS-G 75 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~-g 75 (591)
.|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. +.++.+... +...+|.|.+++++|+|.|+|.|.|.. |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 377889999999999999999984 7999998 7877655 334444332 234789999999999999999999996 8
Q ss_pred eeEEEEEEEE
Q psy12425 76 SVSGTFTINI 85 (591)
Q Consensus 76 ~~~~~~~l~v 85 (591)
..+.++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8888888876
No 27
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=6.6e-16 Score=105.90 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=64.3
Q ss_pred cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
+|+++.|.|.+.|.|.|.+.|+|+|..+....+..+. ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6999999999999999999999999988766554432 2238999999999999999999999999988888765
No 28
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.65 E-value=2e-15 Score=103.77 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=67.4
Q ss_pred eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
++.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++.++|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999997777777777777889999999999999999999999999988888765
No 29
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.65 E-value=2.5e-15 Score=106.35 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=71.2
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG 79 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~ 79 (591)
|.++.+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+...+...+|.|.++..+|+|.|+|.|.|..|.. ..
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 67889999999999999999998 999998 5777776677777666666799999999999999999999999886 55
Q ss_pred EEEEEE
Q psy12425 80 TFTINI 85 (591)
Q Consensus 80 ~~~l~v 85 (591)
++.|.+
T Consensus 86 ~i~l~~ 91 (92)
T cd05866 86 TVVLEI 91 (92)
T ss_pred EEEEEE
Confidence 576665
No 30
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=1.7e-15 Score=102.91 Aligned_cols=73 Identities=27% Similarity=0.402 Sum_probs=61.9
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+|.|.+.|.|.|.|.|+|++..+..+ .++.+...+ ...+|.|.+++++|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998754 455554433 2347999999999999999999999999998888765
No 31
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.64 E-value=2.2e-15 Score=106.36 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=70.7
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+ .+ ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EA--GDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 7889999999999999999999999999999999876655543 22 3799999999999999999999999998888
Q ss_pred EEEE
Q psy12425 82 TINI 85 (591)
Q Consensus 82 ~l~v 85 (591)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 8765
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.63 E-value=3.7e-15 Score=107.90 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=70.4
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe------CCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL------DDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
..++..|+.+.|.|.+.|.|+|.+.|+|||++|..+.+...... ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56789999999999999999999999999999986654322211 123689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy12425 78 SGTFTINIT 86 (591)
Q Consensus 78 ~~~~~l~v~ 86 (591)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888875
No 33
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=4.4e-15 Score=108.26 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=68.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEE--CCEEeec-----CCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK--NGRVVQS-----DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
++++.+.+|++++|.|.+.|.|.|.+.|+| ++..+.. +.++.+.......+|.|.+++.+|+|.|.|.|.|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 467899999999999999999999999999 4554432 234555444455789999999999999999999999
Q ss_pred eeeEEEEEEEE
Q psy12425 75 GSVSGTFTINI 85 (591)
Q Consensus 75 g~~~~~~~l~v 85 (591)
|....++.|.|
T Consensus 88 G~~~~~~~l~~ 98 (98)
T cd05870 88 GGHQKSMYLDI 98 (98)
T ss_pred CcceeEEEEeC
Confidence 99888887764
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.63 E-value=5.7e-15 Score=107.38 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=71.5
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
.++.+..|+++.|.|.+.|.|.|.+.|+|+|..+.... .++....+...|.|.+++.+|.|.|+|.|.|..|.....+.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 45678999999999999999999999999999887651 22333344558999999999999999999999999999999
Q ss_pred EEEec
Q psy12425 83 INITG 87 (591)
Q Consensus 83 l~v~~ 87 (591)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 88864
No 35
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.62 E-value=8.2e-15 Score=104.25 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=69.3
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
.+.|.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.+. .+.......+|.|.++.++|+|.|+|.|.|..|....++.
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 456899999999999999999999999999998766443 2223334568999999999999999999999999988888
Q ss_pred EEE
Q psy12425 83 INI 85 (591)
Q Consensus 83 l~v 85 (591)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 36
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.62 E-value=8.9e-15 Score=102.67 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=65.5
Q ss_pred CeEEEEEEeccCCCc--eEEEEECCEEeecC---Cce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 11 DNTKVKIFYAGDQPM--EVSLTKNGRVVQSD---DRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 11 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
++++|.|.+.|+|.| .+.|+|||+.+... .++ ++....+..+|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 579999999999876 68999999988653 233 223333456999999999999999999999999999999999
Q ss_pred EecCC
Q psy12425 85 ITGLP 89 (591)
Q Consensus 85 v~~~p 89 (591)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 37
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.62 E-value=5.1e-15 Score=101.68 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
|+++.|.|.+.|.|.|+|.|+|+|+++...........+ ...|.|.++++.|+|.|+|.|.|..|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec-CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 789999999999999999999999998644221111122 2378999999999999999999999999999998873
No 38
>KOG3515|consensus
Probab=99.62 E-value=1.7e-13 Score=130.47 Aligned_cols=543 Identities=15% Similarity=0.035 Sum_probs=277.2
Q ss_pred eeecCCeEEEEEEec--cCCCceEEEEECCEEeecCC--ceeEE------EeCCeEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425 6 YIPEGDNTKVKIFYA--GDQPMEVSLTKNGRVVQSDD--RFKFT------VLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 6 ~v~~G~~~~l~C~~~--~~p~~~v~W~~~~~~~~~~~--~~~~~------~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g 75 (591)
....+..+.+.|.+. +.|.+.+.|..++....... +..+. .......|.+.....++.|.|+|.|.|...
T Consensus 108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s 187 (741)
T KOG3515|consen 108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNS 187 (741)
T ss_pred hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccC
Confidence 456788999999653 47888999999886553321 11111 112235688888889999999999988532
Q ss_pred ---eeEEEEEEEEecCCCCCCC--Ccc-eEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeec-CcceE
Q psy12425 76 ---SVSGTFTINITGLPGPPIG--PLD-VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTTF 148 (591)
Q Consensus 76 ---~~~~~~~l~v~~~p~~p~~--~~~-~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (591)
..-....+.+......... ... -.-..+..+.+.|..-........++|.-......+.......... .....
T Consensus 188 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~ 267 (741)
T KOG3515|consen 188 PGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTL 267 (741)
T ss_pred ccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccc
Confidence 2233344444433222111 001 0112456788888543322233344444322211110000000000 00011
Q ss_pred EEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccc-cCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEE
Q psy12425 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA-KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227 (591)
Q Consensus 149 ~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~ 227 (591)
.+..-..+..-.+.|.+.| .+... ..+.. ..+...+.. ........+.+..+.|..........+.+|.-.
T Consensus 268 ~~~~~r~~~~~~~kc~a~n-~~~~~-----~~tav~~~~~~~~Is--t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~ 339 (741)
T KOG3515|consen 268 VLRVGRQDLQAQLKCKASN-LLAAS-----QITAVQVKPTAVPIS--TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDT 339 (741)
T ss_pred cccccccchhhhhhccccC-ccccc-----eeeeccccccccccc--CcccccccccccccceeccCCCCccceeeeccC
Confidence 1111111223345688876 11100 01111 011111111 112224556777777776655554455555411
Q ss_pred eeecCCCccEEE--EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEE-eeccccce
Q psy12425 228 KHEVGSDAWQRV--NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEII-VPLRNANA 304 (591)
Q Consensus 228 ~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~-~~~~~~~~ 304 (591)
....+...-.+. .........+.+......+.+.|.|.|-+.... ..++....+.+. .+|.++ .....+..
T Consensus 340 ~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~-~~sss~~~l~~l-----~~p~~L~~~~~~v~~ 413 (741)
T KOG3515|consen 340 KMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA-HSSSSSFLLPVL-----PSPAFLVRHKTAVVA 413 (741)
T ss_pred cccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc-cccccceecccc-----CCchhhhhcccceee
Confidence 111111000000 000011234556667788999999999887632 222233333322 334433 33333444
Q ss_pred eccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425 305 IQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383 (591)
Q Consensus 305 ~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 383 (591)
.+.+.....-.+.++| .+.+.|.+.+.++.......+..-...-...+.++...|.|.|.|.|.|..|.......+.+.
T Consensus 414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~ 493 (741)
T KOG3515|consen 414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH 493 (741)
T ss_pred ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence 5554444443333544 467999988877765544322211111134466789999999999999999988888778888
Q ss_pred cCCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeecc--ceEEEecCCeeEEEEeccCCCcceeE
Q psy12425 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGG--HFHVETSERHAILTIRDASNVDTAPY 459 (591)
Q Consensus 384 ~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y 459 (591)
+.|.+.... .......++.+.+.|..+..+. -.+.|.+.++...... ............+.+.......+|.|
T Consensus 494 ~sp~~~~~~---~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 570 (741)
T KOG3515|consen 494 TSPHNHHLQ---DQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASET 570 (741)
T ss_pred cCCcccccc---cccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccce
Confidence 877765322 2233466777999999876653 4789999887653221 11122223467778887877888999
Q ss_pred EEEEEcCCCccceEEEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEE-e-
Q psy12425 460 RVVAENDLGMDSAIVKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIR-V- 531 (591)
Q Consensus 460 ~c~a~n~~g~~~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~-~- 531 (591)
.|.+.+..--+.....+.+..++. .+..+.........+++++.+ .+.+...|.....+... ..... .
T Consensus 571 ~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a----~~~~~~~~~~~k~p~~~~~~~~~~~~~~ 646 (741)
T KOG3515|consen 571 ACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVA----SGVPSTSFTTAKTPLQTTEGPHIREKAT 646 (741)
T ss_pred EEeecCCCCccccceEEEecccccccccCCceeeeccCccccccccee----cccccceeecccCCCcccCCceEEEeee
Confidence 999999322333444444443331 111122221122234444421 22233344333322110 00000 0
Q ss_pred --ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCc
Q psy12425 532 --GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569 (591)
Q Consensus 532 --~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~ 569 (591)
......+..+-+..++..|.+.|.+.|..|.+..+...
T Consensus 647 ~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~ 686 (741)
T KOG3515|consen 647 QQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAI 686 (741)
T ss_pred eccccccccccccCCcchhhhcceeeecccCCCcccccee
Confidence 12233345556677888999999999999987766543
No 39
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.61 E-value=6.8e-15 Score=101.98 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=66.8
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.+++.+|.|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999999887777777776666789999999999999999999999998866654443
No 40
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=8.2e-15 Score=101.07 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=62.6
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+++.|.|.+.|.|.|.++|+|+|..+...... ++... ...|.|.+++++|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988664321 22222 237999999999999999999999999988888877
No 41
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=5.5e-15 Score=102.51 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=67.5
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|..+.+.+|+++.|.|.+.+. .+.+.|+|||.+|....++++. + ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 788999999999999999986 5689999999999776666553 3 2799999999999999999999998877766
Q ss_pred EEEE
Q psy12425 82 TINI 85 (591)
Q Consensus 82 ~l~v 85 (591)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.61 E-value=8.7e-15 Score=100.09 Aligned_cols=73 Identities=26% Similarity=0.357 Sum_probs=61.8
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
++|.|.+.|.|.|.|.|+|++..+... .++.+... .+..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999998754 45555433 33458999999999999999999999999988888764
No 43
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=5.2e-15 Score=97.04 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=57.0
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
+.|.|.+.|.|.|.++|+|||+.|... .....|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999998632 134589999999999999999999999988777777664
No 44
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.60 E-value=1.5e-14 Score=102.43 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=71.4
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec----CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS----ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+... ...+.|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 678999999999999999999999888643 34544421 2237899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy12425 478 ISDRPDPP 485 (591)
Q Consensus 478 v~~~p~~p 485 (591)
|.++|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99999887
No 45
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=1.3e-14 Score=98.28 Aligned_cols=71 Identities=24% Similarity=0.289 Sum_probs=61.3
Q ss_pred eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
++.|.|.+.|.|.|.+.|+|+|..+....++++...+ .|.|.+++++|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999988777666554332 5788899999999999999999999999888765
No 46
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.1e-14 Score=103.20 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....++. ..+ ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~--~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSG--AVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence 4777788888889999999999999999999999999988776543332 222 379999999999999999999999
Q ss_pred cceeeeeEEEE
Q psy12425 372 GVKSTKAELII 382 (591)
Q Consensus 372 g~~~~~~~l~v 382 (591)
|.....+.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99988888776
No 47
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.59 E-value=1.4e-14 Score=102.88 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=66.3
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGT 80 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~ 80 (591)
|.++.+.+|++++|.|.+.|. .|.+.|+|++..+... +.. ...+..+|.|.+++++|+|.|+|.|.|..|.. +..
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQ--LSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEE--EeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 456789999999999999999 9999999999987543 333 33444589999999999999999999999986 445
Q ss_pred EEEEE
Q psy12425 81 FTINI 85 (591)
Q Consensus 81 ~~l~v 85 (591)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 76766
No 48
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=9.6e-15 Score=104.32 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=69.3
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+......+ .....|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 778899999999999999999999999999987665543322 1234899999999999999999999999998888
Q ss_pred EEEEe
Q psy12425 82 TINIT 86 (591)
Q Consensus 82 ~l~v~ 86 (591)
.|.|.
T Consensus 84 ~l~V~ 88 (88)
T cd04968 84 RIYVQ 88 (88)
T ss_pred EEEEC
Confidence 88763
No 49
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=2.5e-14 Score=100.65 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=71.8
Q ss_pred ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+...+..+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 456788999999999999999999999999988653 4566666667889999999999999999999999999888887
Q ss_pred EEe
Q psy12425 476 IQI 478 (591)
Q Consensus 476 ~~v 478 (591)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 764
No 50
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.59 E-value=1.3e-14 Score=106.01 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=69.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.+++.+|+|.|.|.|.|..|.
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 45788999999999999999999999999998766543 2333333344579999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12425 77 VSGTFTINI 85 (591)
Q Consensus 77 ~~~~~~l~v 85 (591)
.+.++.|.|
T Consensus 88 ~~~s~~l~v 96 (96)
T cd05732 88 DQQSMYLEV 96 (96)
T ss_pred cEEEEEEeC
Confidence 988887764
No 51
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.59 E-value=1.9e-14 Score=104.67 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=67.8
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
|....+..|+.++|.|.+.|.|.|.++|++++..+... .++.+........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 9 ~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 88 (97)
T cd05869 9 ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ 88 (97)
T ss_pred cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC
Confidence 44455666899999999999999999999999877543 2233333334468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12425 77 VSGTFTINI 85 (591)
Q Consensus 77 ~~~~~~l~v 85 (591)
.+.++.|.|
T Consensus 89 ~~~~~~l~v 97 (97)
T cd05869 89 DSQSMYLEV 97 (97)
T ss_pred eeEEEEEEC
Confidence 998888765
No 52
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=1.3e-14 Score=99.18 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+++.|.|.+.|.|.+.++|+|++..+....++.+. .+ .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--PD-GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--CC-CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999998777666543 22 37999999999999999999999999998888765
No 53
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=1.6e-14 Score=100.21 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
|+++.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 789999999999999999999999988765432 1222333589999999999999999999999999998888773
No 54
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.57 E-value=3.9e-14 Score=101.89 Aligned_cols=83 Identities=23% Similarity=0.518 Sum_probs=72.3
Q ss_pred cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~ 474 (591)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 456678999999999999999999999999999987777776644 4467899999999999999999999999988887
Q ss_pred EEEe
Q psy12425 475 KIQI 478 (591)
Q Consensus 475 ~~~v 478 (591)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 7754
No 55
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.57 E-value=2.4e-14 Score=97.05 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=58.8
Q ss_pred EEEEeccCCCceEEEEECCEEeecCCceeEE--E---eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 15 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT--V---LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 15 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~---~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
|.|.+.|.|.|+|+|+|||+.|..+.+.... . ......|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 7899999999999999999999877654332 1 12346899999999999999999999999988887765
No 56
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.57 E-value=3.1e-14 Score=102.48 Aligned_cols=89 Identities=26% Similarity=0.462 Sum_probs=78.5
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 67777788888999999999999999999999999999988877777777766667799999999999999999999999
Q ss_pred cceeeeeEE
Q psy12425 372 GVKSTKAEL 380 (591)
Q Consensus 372 g~~~~~~~l 380 (591)
|.......|
T Consensus 83 G~~~~~~~l 91 (92)
T cd05747 83 GKQEAQFTL 91 (92)
T ss_pred CCEeEEEEe
Confidence 987766554
No 57
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.56 E-value=3.7e-14 Score=97.96 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=59.6
Q ss_pred EEEEeccCCCceEEEEECCEEeecCCceeEEEe-------CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 15 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-------DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 15 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|.|.+.|.|.|.|+|+|||+.|..+.+...... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 789999999999999999999987765443322 22457999999999999999999999999988887754
No 58
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.55 E-value=2.5e-13 Score=114.14 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=84.7
Q ss_pred CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-----CC
Q psy12425 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-----GC 319 (591)
Q Consensus 245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-----~~ 319 (591)
....|.|.+++..|+|.|.|.|.|..|.. .....+.+.. + ..+..+.+|+.+.|.|.+. +.
T Consensus 96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~---~~~i~L~V~~-----~------~~~~~~~~G~~v~L~C~~~~~~~~~~ 161 (227)
T PHA02826 96 RSENLWIGNVINIDEGIYICTISSGNICE---ESTIRLTFDS-----G------TINYQFNSGKDSKLHCYGTDGISSTF 161 (227)
T ss_pred CCCeEEECCCChHHCEEEEEEEEECCcce---EEEEEEEEec-----C------CccceEecCCCEEEEeeCCCCccccC
Confidence 35689999999999999999999976542 2333344421 1 1234567899999999985 34
Q ss_pred CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
|.|.+.|++++..+....++.+..++ .+|.|.+++.+|+|.|+|.|....+
T Consensus 162 p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 162 KDYTLTWYKNGNIVLYTDRIQLRNNN--STLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCceEEEEECCEECCCCCCEEEeCCC--CEEEECcCCHHhCEEEEEEEEEeEC
Confidence 67899999999998766666554333 3899999999999999999988643
No 59
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.55 E-value=7.8e-14 Score=100.79 Aligned_cols=90 Identities=28% Similarity=0.564 Sum_probs=83.2
Q ss_pred CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
|.|...+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+..++|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 56777788899999999999999999999999999999999988899999888999999999999999999999999999
Q ss_pred ceeeeeEEEE
Q psy12425 373 VKSTKAELII 382 (591)
Q Consensus 373 ~~~~~~~l~v 382 (591)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 8888877765
No 60
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.55 E-value=4e-14 Score=97.60 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=64.0
Q ss_pred CeEEEEEEeccC--CCceEEEEECCEEeecC---CceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 11 DNTKVKIFYAGD--QPMEVSLTKNGRVVQSD---DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 11 ~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~---~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
+++.|.|.+.++ +.+.|.|+|||+.|... .++.... ......|+|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 578999999874 47899999999999632 2333211 12345899999999999999999999999999999999
Q ss_pred EecCC
Q psy12425 85 ITGLP 89 (591)
Q Consensus 85 v~~~p 89 (591)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99776
No 61
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=2.3e-14 Score=95.53 Aligned_cols=69 Identities=30% Similarity=0.468 Sum_probs=57.3
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
+.|.|.+.|.|.|.+.|+|||+++....++ . ....|.|.++.++|+|.|+|.|.|..|..+...++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 479999999999999999999999765332 1 23479999999999999999999999988776665553
No 62
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=3.2e-14 Score=96.10 Aligned_cols=70 Identities=27% Similarity=0.465 Sum_probs=59.4
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
+.|.|.+.|.|.|.+.|+|||..+..+.++. ....+|.|.+++.+|+|.|+|.|.|..|..+.++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999999999999999999997764332 233589999999999999999999999988887777664
No 63
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.55 E-value=4.9e-14 Score=97.20 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=58.7
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCC-ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE--EEEEEEEec
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDD-RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS--GTFTINITG 87 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~--~~~~l~v~~ 87 (591)
++|.|.+.|.|.|.++|+|+|..+.... ++.+ ......|.|.+++++|+|.|.|.|.|..|... ..+.|.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 5899999999999999999999986653 2333 23335899999999999999999999999874 346666653
No 64
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.55 E-value=5.6e-14 Score=101.49 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=70.3
Q ss_pred cceeecCCCeEEEEEeeec-cCCCeEEEeeCCeEeeeccceEEEecC-----CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 396 DTAYFDKGENVVVKIPFTG-YPKPKITWYRDNEVIESGGHFHVETSE-----RHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
....+..|+.+.|.|.+.| .|+|.+.|+|+|.++.......+...+ ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4566788999999999999 899999999999998754443333221 2578999999999999999999999999
Q ss_pred cceEEEEEec
Q psy12425 470 DSAIVKIQIS 479 (591)
Q Consensus 470 ~~~~~~~~v~ 479 (591)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9988888774
No 65
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=7.3e-14 Score=98.89 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=64.3
Q ss_pred CeEEEEEEeccCCCc--eEEEEECCEEeecCC---cee-EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 11 DNTKVKIFYAGDQPM--EVSLTKNGRVVQSDD---RFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 11 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
+++.|.|.+.|.|.+ .+.|+|+|..+.... +++ ........+|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 578999999998877 679999999886442 221 22223446899999999999999999999999999999999
Q ss_pred EecCC
Q psy12425 85 ITGLP 89 (591)
Q Consensus 85 v~~~p 89 (591)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 66
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.55 E-value=4.6e-14 Score=95.70 Aligned_cols=73 Identities=23% Similarity=0.466 Sum_probs=61.5
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeee-ccceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998874 3455554433 3458999999999999999999999999988888764
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.54 E-value=1.1e-13 Score=102.40 Aligned_cols=101 Identities=27% Similarity=0.435 Sum_probs=78.4
Q ss_pred ecCCcccCCCCcccceee-cCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec----CCeeEEEEeccC-CCc
Q psy12425 383 MTAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS----ERHAILTIRDAS-NVD 455 (591)
Q Consensus 383 ~~~p~~~~~~~~~~~~~~-~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~-~~~ 455 (591)
.++|.+..++.+...... ..|..+.|.|.+.|.|.+.+.|+++|..+... .++.+... ...+.|+|.++. ..|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 456777776664333222 46789999999999999999999999988643 34443321 124789999997 589
Q ss_pred ceeEEEEEEcCCCccceEEEEEecCCCC
Q psy12425 456 TAPYRVVAENDLGMDSAIVKIQISDRPD 483 (591)
Q Consensus 456 ~g~y~c~a~n~~g~~~~~~~~~v~~~p~ 483 (591)
.|.|+|.|.|..|.....+.|.+..+|+
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 9999999999999999999999988774
No 68
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=2.9e-14 Score=101.78 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=66.8
Q ss_pred CceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecC--CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
++...+.+|+++.|.|.+.| .|.+.|.|+|++..+... .+.++... ...|.|.++..+|+|.|.|.+.|..
T Consensus 6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCC
Confidence 56778999999999999998 688999999999765322 22333332 3489999999999999999999999
Q ss_pred eeeEEEEEEEE
Q psy12425 75 GSVSGTFTINI 85 (591)
Q Consensus 75 g~~~~~~~l~v 85 (591)
|..+..+.|.|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99988888765
No 69
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.54 E-value=1.1e-13 Score=102.32 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=68.0
Q ss_pred cCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC----CeEEEEEcccC-CCCceEEEEEEEcCCeeeEEEEE
Q psy12425 9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD----DYIIIFIKEIR-KEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~----~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
.|.+++|.|.+.|.|.+.+.|+|||..+... .++.+.... ...+|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 5689999999999999999999999998643 344433221 13689999997 59999999999999999999999
Q ss_pred EEEecCCC
Q psy12425 83 INITGLPG 90 (591)
Q Consensus 83 l~v~~~p~ 90 (591)
|.|...|+
T Consensus 102 L~~~~~p~ 109 (109)
T cd05773 102 LVSTSRPD 109 (109)
T ss_pred EEecCCCC
Confidence 99998774
No 70
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.54 E-value=6.7e-14 Score=96.81 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=65.4
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
+.|.|.+.|.|.|.+.|+|++..+....+.++...++...|.|.+++.+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999999999999999999877655566656666789999999999999999999999999999988885
No 71
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=3.3e-14 Score=95.79 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=59.0
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l 83 (591)
|.|.|.+.|.|.|.+.|+|+|..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999987766655432 2389999999999999999999999998887766
No 72
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.53 E-value=1.1e-13 Score=99.08 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=66.2
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCee-eE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VS 78 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~ 78 (591)
|..+.+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+.. .....+|.|.+++.+|+|.|+|.|.|..|. .+
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 77899999999999999999874 999998 677666555554433 234579999999999999999999998654 46
Q ss_pred EEEEEEE
Q psy12425 79 GTFTINI 85 (591)
Q Consensus 79 ~~~~l~v 85 (591)
.++.|.|
T Consensus 86 ~sv~l~~ 92 (92)
T cd04977 86 ATVNLKI 92 (92)
T ss_pred eEEEEEC
Confidence 6666653
No 73
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.53 E-value=9.1e-14 Score=95.53 Aligned_cols=74 Identities=27% Similarity=0.616 Sum_probs=66.7
Q ss_pred eEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 405 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
.+.|.|.+.|.|.|.+.|+++|..+....++.+...+....|.|.++...|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999987777777777777899999999999999999999999999988887764
No 74
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.53 E-value=1.3e-13 Score=99.01 Aligned_cols=76 Identities=18% Similarity=0.399 Sum_probs=60.6
Q ss_pred Cceeeee---cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee
Q psy12425 2 PNALYIP---EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 2 p~~~~v~---~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~ 77 (591)
|.++.+. +|+++.|.|.+.|.|.|.|+|+|||..+......++...++ .|.|.++. .+|+|.|+|.|.|..|..
T Consensus 8 p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 8 PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 4555554 57999999999999999999999999997554444443333 68898885 699999999999999987
Q ss_pred EE
Q psy12425 78 SG 79 (591)
Q Consensus 78 ~~ 79 (591)
.+
T Consensus 86 ~S 87 (94)
T cd05848 86 LS 87 (94)
T ss_pred Ee
Confidence 44
No 75
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.53 E-value=8.6e-14 Score=93.03 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l 83 (591)
|++++|.|.+.|.|.|.|+|+|++..+....+... ....|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999998866544322 22378999874 7999999999999998887765
No 76
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.53 E-value=4.8e-14 Score=95.36 Aligned_cols=73 Identities=27% Similarity=0.542 Sum_probs=64.5
Q ss_pred cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+..++ +|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999999888777777775555 7999999999999999999999999988877764
No 77
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.53 E-value=2e-13 Score=98.15 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=62.1
Q ss_pred CceeeeecC---CeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee
Q psy12425 2 PNALYIPEG---DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 2 p~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~ 77 (591)
|.++.+.+| ++++|.|.+.|.|.+.|+|++||..+......++...++ .|.|.++. ..|+|.|+|.|.|..|..
T Consensus 8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 566766666 589999999999999999999999987543333333332 68888865 599999999999999987
Q ss_pred EE-EEEE
Q psy12425 78 SG-TFTI 83 (591)
Q Consensus 78 ~~-~~~l 83 (591)
.+ .+.|
T Consensus 86 ~s~~a~l 92 (94)
T cd05850 86 VSREANL 92 (94)
T ss_pred EEEEEEE
Confidence 54 4544
No 78
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=7.2e-14 Score=96.26 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=58.2
Q ss_pred EEEEEEeccCCCceEEEEECCEEe-ecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVV-QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
+.|.|.+.|.|.|.++|+|+|... ......++........|.|.+++++|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 479999999999999999998643 22222223333333489999999999999999999999999888888873
No 79
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.52 E-value=1.4e-13 Score=98.23 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=66.0
Q ss_pred CceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-
Q psy12425 2 PNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS- 78 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~- 78 (591)
|..+.+.+|+++.|.|.+ .|.|.+.+.|+|+|..+... .++.+. . ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV--D-DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc--c-CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 788999999999999998 78999999999999988764 333332 2 24799999999999999999999999864
Q ss_pred EEEEEE
Q psy12425 79 GTFTIN 84 (591)
Q Consensus 79 ~~~~l~ 84 (591)
..+.|.
T Consensus 80 ~~~~l~ 85 (86)
T cd05724 80 AAARLS 85 (86)
T ss_pred eeEEEE
Confidence 345554
No 80
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=6.7e-14 Score=94.80 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=58.9
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
+.|.|.+.|.|.|.+.|+|++..+.... ... .....+|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 5799999999999999999998775442 222 233458999999999999999999999999988888876
No 81
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=1.6e-13 Score=99.61 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=64.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEccc-----CCCCceEEEEEEEcC-Ce
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-----RKEDAGDYTVNLSNS-SG 75 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~c~~~n~-~g 75 (591)
|.+..+.+|+++.|.|.+.|.|.|.+.|+|||..+....+.+.....+. .|.|.++ .+.|.|.|+|.|.|. .|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-SLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence 6788899999999999999999999999999999876543222222222 4666666 689999999999999 88
Q ss_pred ee-EEEEEEEE
Q psy12425 76 SV-SGTFTINI 85 (591)
Q Consensus 76 ~~-~~~~~l~v 85 (591)
.. +..+.|.|
T Consensus 85 ~~~s~~~~l~v 95 (95)
T cd05722 85 SIVSRTARLTV 95 (95)
T ss_pred cEEEeeeEEeC
Confidence 87 44566654
No 82
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=6.3e-14 Score=96.06 Aligned_cols=74 Identities=35% Similarity=0.671 Sum_probs=63.6
Q ss_pred ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 306 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+ +|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5889999999999999999999999888765555544333 7999999999999999999999999888777754
No 83
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.51 E-value=1.2e-13 Score=97.91 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=66.6
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l 83 (591)
.+.+..|+++.|.|.+.|.|.|.+.|+|++..+....... ......+|.|.+++++|+|.|.|.|.|..|.....+.|
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 4678899999999999999999999999998876543322 22344689999999999999999999999988887777
Q ss_pred EE
Q psy12425 84 NI 85 (591)
Q Consensus 84 ~v 85 (591)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 54
No 84
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.50 E-value=1.3e-13 Score=94.93 Aligned_cols=70 Identities=10% Similarity=0.191 Sum_probs=58.4
Q ss_pred CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
|.++.|.+|+++.|.|.+.|.|.| .|.|+|||.++... .. .....|.|.++ .|+|.|.|.|.|..|...+
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 788999999999999999999999 79999999988641 11 12247888887 4789999999999997654
No 85
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=1.9e-13 Score=99.04 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=69.5
Q ss_pred cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec------CCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS------ERHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
....+..|..+.|.|.+.|.|.|.+.|+++|.++........... ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 345667899999999999999999999999999875544322211 23478999999999999999999999999
Q ss_pred cceEEEEEec
Q psy12425 470 DSAIVKIQIS 479 (591)
Q Consensus 470 ~~~~~~~~v~ 479 (591)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888888764
No 86
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.50 E-value=1.7e-13 Score=98.04 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=60.1
Q ss_pred CCeEEEEEEeccCCCceEEEEEC----CEEeecCCceeEE--E-------eCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKN----GRVVQSDDRFKFT--V-------LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~~~--~-------~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
|++++|.|.+.|.|.|.|+|+|+ |..+....+.... . ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 4444433221111 1 112368999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12425 77 VSGTFTINI 85 (591)
Q Consensus 77 ~~~~~~l~v 85 (591)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888887
No 87
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.50 E-value=1.8e-13 Score=93.05 Aligned_cols=73 Identities=25% Similarity=0.471 Sum_probs=60.8
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+... .++.+...+ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 479999999999999999999988643 445554433 3347999999999999999999999999988887764
No 88
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.9e-13 Score=97.97 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEee--------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQ--------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|+++.|.|.+.|.|.|.+.|+|+|..+. ...++.+ ..+ ..|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--SQT-GDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--CCC-CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 7899999999999999999999986531 1233333 222 3799999999999999999999999999999
Q ss_pred EEEEecCC
Q psy12425 82 TINITGLP 89 (591)
Q Consensus 82 ~l~v~~~p 89 (591)
.|.|....
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99998743
No 89
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.49 E-value=5.8e-13 Score=95.40 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=68.7
Q ss_pred ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~ 476 (591)
...+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 34478999999999999999999999999988765444333334456789999999999999999999999998888777
Q ss_pred Ee
Q psy12425 477 QI 478 (591)
Q Consensus 477 ~v 478 (591)
.+
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 54
No 90
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.49 E-value=3.6e-13 Score=94.52 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=65.5
Q ss_pred CeEEEEEeeeccCCC--eEEEeeCCeEeeec---cceE-EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 404 ENVVVKIPFTGYPKP--KITWYRDNEVIESG---GHFH-VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 404 ~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
+.+.|.|.+.|.|.| .+.|+++|..+... .++. +........|+|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 368999999999987 58999999887542 2332 23334567999999999999999999999999999999999
Q ss_pred ecCCC
Q psy12425 478 ISDRP 482 (591)
Q Consensus 478 v~~~p 482 (591)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98876
No 91
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.49 E-value=4.7e-13 Score=97.60 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=67.2
Q ss_pred CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecC--CceeEEEe----CCeEEEEEcccCCC-CceEEEEEEEcC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSD--DRFKFTVL----DDYIIIFIKEIRKE-DAGDYTVNLSNS 73 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~-d~g~Y~c~~~n~ 73 (591)
|..+.+.+|+++.|.|.+.|.|.| .|.|++++..+... .++.+... +...+|.|.+++.+ |.|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 456779999999999999999998 69999999988654 45555433 22368999999995 489999999999
Q ss_pred CeeeEEEEEE
Q psy12425 74 SGSVSGTFTI 83 (591)
Q Consensus 74 ~g~~~~~~~l 83 (591)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998877765
No 92
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.49 E-value=2.1e-13 Score=93.26 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=57.4
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~~l~v 85 (591)
++|.|.+.|.|.|.|.|+|++..+......++....+ ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 5799999999999999999999886432223333333 369999999999999999999999986 55577765
No 93
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.49 E-value=4.5e-13 Score=99.31 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=63.7
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC----CceeEEE-eCCeEEEEEc--ccCCCCceEEEEEEEcCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD----DRFKFTV-LDDYIIIFIK--EIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~-~~~~~~l~i~--~~~~~d~g~Y~c~~~n~~ 74 (591)
|.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+... ....+.. .+....+.|. .+..+|+|.|+|.|.|..
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~ 87 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL 87 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence 67889999999999999999999999999999988762 1222222 2222333333 347899999999999999
Q ss_pred ee-eEEEEEEEE
Q psy12425 75 GS-VSGTFTINI 85 (591)
Q Consensus 75 g~-~~~~~~l~v 85 (591)
|. .+..+.|.|
T Consensus 88 G~~~s~~~~l~v 99 (100)
T cd07693 88 GEAVSRNASLEV 99 (100)
T ss_pred cceecceEEEEe
Confidence 99 466677765
No 94
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.48 E-value=2.6e-13 Score=96.92 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCeEEEEEEeccCCCceEEEEECC----EEeecCCc--eeEEE-------eCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNG----RVVQSDDR--FKFTV-------LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
|+.++|.|.+.|.|.|+|+|+|++ ..+..... ..... .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 33322211 11111 123358999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy12425 77 VSGTFTINIT 86 (591)
Q Consensus 77 ~~~~~~l~v~ 86 (591)
...++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9888888873
No 95
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=4.2e-13 Score=92.28 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=60.2
Q ss_pred CCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.... .+ .+|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~-~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--DN-GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--cC-CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 67766555444332 22 37999999999999999999999999888887764
No 96
>KOG0613|consensus
Probab=99.47 E-value=3e-12 Score=127.22 Aligned_cols=546 Identities=18% Similarity=0.195 Sum_probs=293.2
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC---CceeE---EEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD---DRFKF---TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
.+.+.+|....|.-++.|.|.+.-.|-.++..+... ..+.. ....-..++-+.+-..+|.+.|...-.+..+ .
T Consensus 49 v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~ 127 (1205)
T KOG0613|consen 49 VLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-V 127 (1205)
T ss_pred ceeccCCcceeeeeeeccccccCCCCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-c
Confidence 356778888888888888777666665554322110 00010 0111112333333444445444444433333 2
Q ss_pred EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeec-CcceEEEcCCcCC
Q psy12425 78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTTFIVQGLTEG 156 (591)
Q Consensus 78 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~ 156 (591)
.....+.-...|..|.............+...|..+..+++.....|+++.+..++..|....... ......+ ....
T Consensus 128 ~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~--a~~e 205 (1205)
T KOG0613|consen 128 VPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTD--AHYE 205 (1205)
T ss_pred cccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceec--cccc
Confidence 333333334445555444445556677788899999999999999999999998888877654422 2222222 2133
Q ss_pred cEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeee-cCCCc
Q psy12425 157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHE-VGSDA 235 (591)
Q Consensus 157 ~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~-~~~~~ 235 (591)
..+.+.|.+.+..+...+.. ......+...+........+...+.+.|..+..+....+.+|.++... .+...
T Consensus 206 ~~v~~v~s~gqp~~~~~~~~------~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t 279 (1205)
T KOG0613|consen 206 SRVRAVVSAGQPEPLERWEI------LGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNT 279 (1205)
T ss_pred eeEEEEEecCCCccchhhhh------cccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcc
Confidence 44555555544333222211 111122333333333333444456677766543333344445444333 23333
Q ss_pred cEEEEeeecCCceeeecCcccCCcEEEEEEE--EcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEE
Q psy12425 236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYA--QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQ 313 (591)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a--~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~ 313 (591)
|...+.........+. +.....+.++|.+ .-..|...+.......... ..+..|........+....+..+.+.
T Consensus 280 ~~i~~~~~~~~~s~t~--~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa--~~~~~~v~~~~~~~v~a~d~~~v~m~ 355 (1205)
T KOG0613|consen 280 KTIQNDGPEPELSWTV--ADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAA--RPPEVPVGLVRNLSVTARDNTLVEMP 355 (1205)
T ss_pred ccccccCCccccceee--ecccCCcccceeeeEEeeccccccCchhhhhhcc--CCccccccccccceeccccCcceeec
Confidence 3333222111111111 1122222333322 2222332222222111111 11122333333345566778899999
Q ss_pred EEEcCCCCCe-eEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccC
Q psy12425 314 CTITGCPKPT-ISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390 (591)
Q Consensus 314 c~~~~~p~~~-v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~ 390 (591)
|...+.+.+. +.|+++......+. ..........+.+.+..+.+.+.+.|.|.|.|..|.........+...+....
T Consensus 356 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~ 435 (1205)
T KOG0613|consen 356 TALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQ 435 (1205)
T ss_pred ccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCC
Confidence 9999988876 99998766554443 23333444566889999999999999999999999887666666665554444
Q ss_pred CCCcccce----eecCCCeEEEEEeeeccCCC--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEE
Q psy12425 391 PPRFRDTA----YFDKGENVVVKIPFTGYPKP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464 (591)
Q Consensus 391 ~~~~~~~~----~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~ 464 (591)
+..+.... .+..-+.+.+.|...+.+.+ .++|++++.... ........+....|.+.-....+.+.|.....
T Consensus 436 ~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~ 513 (1205)
T KOG0613|consen 436 PPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALR 513 (1205)
T ss_pred CccccccccccccccCCcccccccCCCCccccceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhh
Confidence 43332221 22334778889998888855 455555543322 22222233456677777788888888876665
Q ss_pred cCCCccce--EEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEc
Q psy12425 465 NDLGMDSA--IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542 (591)
Q Consensus 465 n~~g~~~~--~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~ 542 (591)
...|..-. ...+.- ..+.+|..+.-...-.....|.|.+-..+.+..-..|..... ..+.|+.......+..++.
T Consensus 514 ~~~~k~~~~~~~~l~~-~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~r~gtt~t~~ 590 (1205)
T KOG0613|consen 514 TLQGKPVPSLDRKLPA-AKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPESRPGTTETIG 590 (1205)
T ss_pred ccCCCCCCcccccccc-cccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCcccccCCCcccccc
Confidence 55554422 222211 122333222222233456677777533233322234443333 3355555533333899999
Q ss_pred CcccCceEEEEEEEEcCCcCCCCCC
Q psy12425 543 GLSPGHQYEFRVYAENVYGRSDPST 567 (591)
Q Consensus 543 ~l~~~~~Y~~~v~A~n~~G~~~~s~ 567 (591)
+..+++.|.+++.+.+..|.+.++.
T Consensus 591 ~~~p~~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 591 SILPGHEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred cccccccceeehhhhhcccccCCCC
Confidence 9999999999999999999999885
No 97
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=2.1e-13 Score=92.13 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=57.7
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
++|.|.+.|.|.|.+.|+|++..+... ++.+. ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998876443 44443 2347999999999999999999999999888887764
No 98
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.47 E-value=4.2e-13 Score=92.99 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=64.9
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6789999999999999999999998887666666666666789999999999999999999999998765554443
No 99
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=2.6e-13 Score=89.03 Aligned_cols=65 Identities=22% Similarity=0.506 Sum_probs=56.0
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|+|+|..+.. ......|.|.++..+|+|.|+|.|.|..|..+..+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~--------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG--------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc--------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 47899999999999999999988852 124679999999999999999999999998777766654
No 100
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=6.5e-13 Score=96.82 Aligned_cols=90 Identities=27% Similarity=0.465 Sum_probs=70.1
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccCCC-----CCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREITP-----SARHHIFAEGDTYTLIINSVYGVDADEYV 364 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 364 (591)
+|.+.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++.+.......+|.|.++..+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 355543 5678899999999999999999999999984 333321 23455544445568999999999999999
Q ss_pred EEEEeCCcceeeeeEEEE
Q psy12425 365 CRAVNKGGVKSTKAELII 382 (591)
Q Consensus 365 c~a~n~~g~~~~~~~l~v 382 (591)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999998887776653
No 101
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=8.9e-13 Score=93.33 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=69.7
Q ss_pred EeeccccceeccccEEEEEEEcCCCCCeeEEec-CCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
...+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+..++...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34556777899999999999999998 999997 4666666667777667777899999999999999999999999876
Q ss_pred -eeeeEEE
Q psy12425 375 -STKAELI 381 (591)
Q Consensus 375 -~~~~~l~ 381 (591)
..+..|.
T Consensus 83 ~~~~i~l~ 90 (92)
T cd05866 83 QEATVVLE 90 (92)
T ss_pred EEEEEEEE
Confidence 3444443
No 102
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.46 E-value=3.7e-13 Score=89.65 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
+.|.|.+.|.|.|++.|+|+|.++..... ++... ..+|.|.+++.+|+|.|+|.|.|..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999999999999999999876522 22222 24799999999999999999999876655554443
No 103
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.46 E-value=4.4e-13 Score=92.81 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=58.4
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCcee---EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFK---FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
+.|.|.+.| .|.+.+.|+|+|+.+....+.. +.......+|.|.+++.+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999987664433 333445578999999999999999999999998877654
No 104
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.46 E-value=8.4e-13 Score=95.96 Aligned_cols=82 Identities=32% Similarity=0.564 Sum_probs=69.0
Q ss_pred ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++. .......|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 456788999999999999999999999999888654 3332 2344567999999999999999999999999988888
Q ss_pred EEecC
Q psy12425 476 IQISD 480 (591)
Q Consensus 476 ~~v~~ 480 (591)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 87753
No 105
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.46 E-value=1.4e-12 Score=93.45 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=66.8
Q ss_pred eccccceeccccEEEEEEEcCCCC-CeeEEec-CCccCCC-CCceEEEEe-CCeEEEEEcceecccceEEEEEEEeCC-c
Q psy12425 298 PLRNANAIQNHNAQFQCTITGCPK-PTISWLK-GSREITP-SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKG-G 372 (591)
Q Consensus 298 ~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~~-g 372 (591)
.+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..++.+..+ +...+|.|.+++.+|+|.|+|.|.|.. |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 345556889999999999999995 7999998 6766654 334444333 335689999999999999999999996 7
Q ss_pred ceeeeeEEEE
Q psy12425 373 VKSTKAELII 382 (591)
Q Consensus 373 ~~~~~~~l~v 382 (591)
....++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 7777777765
No 106
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.46 E-value=6.2e-13 Score=90.92 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=60.7
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+... .++.+... .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999988743 44554433 34457999999999999999999999999988887764
No 107
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=1.1e-12 Score=93.90 Aligned_cols=83 Identities=23% Similarity=0.517 Sum_probs=70.7
Q ss_pred cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~ 474 (591)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 4567789999999999999999999999999988776666554433 345899999999999999999999999998888
Q ss_pred EEEe
Q psy12425 475 KIQI 478 (591)
Q Consensus 475 ~~~v 478 (591)
.|.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 7764
No 108
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.46 E-value=3.3e-13 Score=93.04 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=53.6
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC----CCceEEEEEEEcCCeeeEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~n~~g~~~~ 79 (591)
++|.|.+.|.|.|+|+|+|||..+......++........|.|..+.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 579999999999999999999988654433444444455888888754 7899999999999998644
No 109
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=1.1e-12 Score=93.75 Aligned_cols=86 Identities=24% Similarity=0.402 Sum_probs=70.0
Q ss_pred CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
+.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....... . ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--M--SGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--E--eCCEEEECCCCcccCEEEEEEEEECCC
Confidence 445555677778999999999999999999999999877665443332 1 223799999999999999999999999
Q ss_pred ceeeeeEEEE
Q psy12425 373 VKSTKAELII 382 (591)
Q Consensus 373 ~~~~~~~l~v 382 (591)
.......|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9888877766
No 110
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.45 E-value=5.8e-13 Score=90.20 Aligned_cols=71 Identities=34% Similarity=0.585 Sum_probs=61.2
Q ss_pred cEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 309 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
.+.|.|.+.|.|.|.+.|++++..+....++.+..++ .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999888776666665555 4888899999999999999999999888877754
No 111
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.45 E-value=4.4e-13 Score=91.62 Aligned_cols=70 Identities=29% Similarity=0.374 Sum_probs=58.5
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
+.|.|.+.|.|.|.+.|+|++..+... +... ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 579999999999999999999877543 2222 233458999999999999999999999999988888876
No 112
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.45 E-value=1e-12 Score=94.25 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECC--------EEeecCCceeEEEe-CCeEEEEEcccCCCCceEEEEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--------RVVQSDDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
+++++.+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.|+.+... ....+|.|.+++.+|+|.|.|.+.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 478999999999999999999999999998633 22223445554322 345799999999999999999998
Q ss_pred cCCeeeEEEEEEEE
Q psy12425 72 NSSGSVSGTFTINI 85 (591)
Q Consensus 72 n~~g~~~~~~~l~v 85 (591)
+..+. .....|.|
T Consensus 83 t~~~~-~~~~~l~v 95 (95)
T cd07701 83 TMPVK-TSKAYLTV 95 (95)
T ss_pred eecCc-cEEEEEEC
Confidence 75333 44555543
No 113
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.45 E-value=1.3e-12 Score=95.01 Aligned_cols=91 Identities=23% Similarity=0.400 Sum_probs=69.2
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-----CceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
.|.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 355554444444455899999999999999999999987665432 233333344456899999999999999999
Q ss_pred EEeCCcceeeeeEEEE
Q psy12425 367 AVNKGGVKSTKAELII 382 (591)
Q Consensus 367 a~n~~g~~~~~~~l~v 382 (591)
|.|..|.....+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999888777654
No 114
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.44 E-value=1.6e-12 Score=92.89 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=60.1
Q ss_pred CceeeeecCC---eEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCee
Q psy12425 2 PNALYIPEGD---NTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 2 p~~~~v~~G~---~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~ 76 (591)
|.++.+.+|. .+.|.|.+.|.|.|.++|+|++..+... .++ ...+ ..|.|.++. .+|+|.|+|.|.|..|.
T Consensus 8 P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~ 83 (93)
T cd05849 8 PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SMVG--GNLVINNPDKYKDAGRYVCIVSNIYGK 83 (93)
T ss_pred CCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EEEC--CEEEECcCCcCCCCEEEEEEEEeCcce
Confidence 5555555544 8999999999999999999999988543 333 2223 379999985 68999999999999998
Q ss_pred eEE-EEEE
Q psy12425 77 VSG-TFTI 83 (591)
Q Consensus 77 ~~~-~~~l 83 (591)
..+ .+.|
T Consensus 84 ~~s~~a~l 91 (93)
T cd05849 84 VRSREATL 91 (93)
T ss_pred EEEccEEE
Confidence 744 3544
No 115
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=8.4e-13 Score=90.62 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=52.9
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC----CCceEEEEEEEcCCeeeEEE-EEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSGT-FTI 83 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~n~~g~~~~~-~~l 83 (591)
+.|.|.+.|.|.|+|+|+|+|..+.......+.......+|.|..+.. .|.|.|+|.|.|..|...+. +.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 579999999999999999999987544333333333334777777764 37899999999999987553 443
No 116
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.44 E-value=4.8e-13 Score=94.43 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=69.3
Q ss_pred eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425 297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376 (591)
Q Consensus 297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~ 376 (591)
..+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++... .+ .|.|.++..+|+|.|+|.|.|..|....
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AG---DLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe-CC---EEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 4456777899999999999999999999999999988766555442 22 6999999999999999999999998887
Q ss_pred eeEEEE
Q psy12425 377 KAELII 382 (591)
Q Consensus 377 ~~~l~v 382 (591)
++.|.|
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 777654
No 117
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.44 E-value=8.4e-13 Score=91.05 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=64.8
Q ss_pred CeEEEEEeeec--cCCCeEEEeeCCeEeee---ccceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 404 ENVVVKIPFTG--YPKPKITWYRDNEVIES---GGHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 404 ~~~~l~c~~~~--~p~~~v~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
+.+.|.|.+.+ .+++.+.|++||..+.. +.+|..... .....|.|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 35789999976 45889999999999962 224433221 3456899999999999999999999999999999999
Q ss_pred ecCCC
Q psy12425 478 ISDRP 482 (591)
Q Consensus 478 v~~~p 482 (591)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99877
No 118
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.43 E-value=9.4e-13 Score=90.42 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=60.8
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
|+.+.|.|.+.|.|.|+|.|+++|.++...... .... ....|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 578899999999999999999999988543211 1111 2347899999999999999999999999998888876
No 119
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=1.5e-12 Score=89.34 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=51.3
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC---C-CCceEEEEEEEcCCeeeEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR---K-EDAGDYTVNLSNSSGSVSGT 80 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~---~-~d~g~Y~c~~~n~~g~~~~~ 80 (591)
+.|.|.+.|.|.|.|+|+|+|..+......++.......+|.|..+. + +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 57999999999999999999997744323233333334588888764 2 46999999999999987443
No 120
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.43 E-value=1.1e-12 Score=89.07 Aligned_cols=72 Identities=21% Similarity=0.534 Sum_probs=58.8
Q ss_pred EEEEeeeccCCCeEEEeeCCeEeeeccceEE--E---ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHV--E---TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~--~---~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
.+.|.+.|.|.|+|+|+++|..+..+..... . .......|.|.++...|+|.|+|.|.|..|..+.++.+..
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 3679999999999999999999976554322 1 1234578999999999999999999999999888877653
No 121
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=1.1e-12 Score=92.43 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=57.9
Q ss_pred CCeEEEEEEeccCCCceEEEEECCE---E--eecCC-ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGR---V--VQSDD-RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~---~--~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l 83 (591)
|+++.|.|.+.|.|.|.+.|+|++. . +.... ..++.. ....+|.|.+++++|+|.|.|.|.|..|.....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999999999999999742 1 11111 111211 123589999999999999999999999999888887
Q ss_pred EE
Q psy12425 84 NI 85 (591)
Q Consensus 84 ~v 85 (591)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 122
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=8.1e-13 Score=90.35 Aligned_cols=73 Identities=34% Similarity=0.555 Sum_probs=63.8
Q ss_pred cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
|+.+.|.|.+.|.|.+.+.|++++..+....++.+..++ +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999988777777665444 6999999999999999999999999888777654
No 123
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.42 E-value=1.8e-12 Score=94.72 Aligned_cols=90 Identities=26% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-----CceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45554 345677899999999999999999999999987655432 233333334456899999999999999999
Q ss_pred EEeCCcceeeeeEEEE
Q psy12425 367 AVNKGGVKSTKAELII 382 (591)
Q Consensus 367 a~n~~g~~~~~~~l~v 382 (591)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999877776653
No 124
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.42 E-value=2.1e-12 Score=91.80 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=66.0
Q ss_pred eecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+...... .+........|.|.++.++|+|.|+|.|.|..|....++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 3578999999999999999999999999988655432 122223456799999999999999999999999988888776
Q ss_pred e
Q psy12425 478 I 478 (591)
Q Consensus 478 v 478 (591)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 4
No 125
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.42 E-value=1.6e-12 Score=89.85 Aligned_cols=72 Identities=28% Similarity=0.598 Sum_probs=59.2
Q ss_pred EEEEeeeccCCCeEEEeeCCeEeeeccceEEEe-------cCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-------SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
.+.|.+.|.|.|.++|+++|..+.......... ......|.|.++...|.|.|+|.|.|..|..+..+.+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 368999999999999999999997665433221 123568999999999999999999999999988877654
No 126
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=1.8e-12 Score=89.39 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=61.2
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999887643211 1111 3467999999999999999999999999888887766
No 127
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.41 E-value=8.4e-13 Score=88.93 Aligned_cols=68 Identities=32% Similarity=0.603 Sum_probs=58.7
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~ 476 (591)
+.|.|.+.|.|.|.+.|++++..+....++.+. ....|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 479999999999999999999888766665543 24689999999999999999999999998877765
No 128
>KOG0196|consensus
Probab=99.41 E-value=1.7e-11 Score=115.39 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=148.6
Q ss_pred ceEEEEEEEcCCeeeEE-EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc------
Q psy12425 63 AGDYTVNLSNSSGSVSG-TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH------ 135 (591)
Q Consensus 63 ~g~Y~c~~~n~~g~~~~-~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~------ 135 (591)
.|.=.|...+..-.... ....--+.+|++|.+ .+..+.+.++.|.|.+|.+.+|..-..|.+..+.-....
T Consensus 305 ega~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~n--lis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~C 382 (996)
T KOG0196|consen 305 EGATSCTCENGYYRADSDPPSMPCTRPPSAPRN--LISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPC 382 (996)
T ss_pred CCCCcccccCCcccCCCCCCCCCCCCCCCccce--eeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccC
Confidence 34444555444333321 133333445556654 234578999999999999999988888998775432111
Q ss_pred -----eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCC-CCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEE
Q psy12425 136 -----WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM-GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 209 (591)
Q Consensus 136 -----~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~ 209 (591)
+..-........+.+.+|.+.++|+|.+.|.|.... +........+...+....|++...+.......++++|+
T Consensus 383 g~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitls 462 (996)
T KOG0196|consen 383 GDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLS 462 (996)
T ss_pred CCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEe
Confidence 111111345678999999999999999999986543 22223344455555666777777888889999999999
Q ss_pred EecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcc
Q psy12425 210 WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280 (591)
Q Consensus 210 w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~ 280 (591)
|..|..+++ .+..|.+.|.+..... ..........+..+|.+|.+++.|.|+++|++..|.+..+....
T Consensus 463 W~~p~~png-~ildYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~ 531 (996)
T KOG0196|consen 463 WSEPDQPNG-VILDYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE 531 (996)
T ss_pred cCCCCCCCC-cceeEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee
Confidence 999987765 5888999999885422 22223334567889999999999999999999999987765433
No 129
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.41 E-value=1.6e-12 Score=90.23 Aligned_cols=75 Identities=25% Similarity=0.263 Sum_probs=62.9
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999888654332 122234578999999999999999999999999988887776
No 130
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=2.3e-12 Score=91.17 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=64.7
Q ss_pred CeEEEEEeeeccCCC--eEEEeeCCeEeeecc---ceE-EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 404 ENVVVKIPFTGYPKP--KITWYRDNEVIESGG---HFH-VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 404 ~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
+.+.|.|.+.|.|.| .+.|+++|..+.... .+. .........|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 367899999999988 679999999876332 222 22233567899999999999999999999999999999999
Q ss_pred ecCCC
Q psy12425 478 ISDRP 482 (591)
Q Consensus 478 v~~~p 482 (591)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98876
No 131
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.40 E-value=1.8e-12 Score=92.75 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=65.0
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe-eeE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG-SVS 78 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g-~~~ 78 (591)
|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.... +.++.... ..|.|.+++++|+|.|.|.|.+..+ ...
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 67889999999999999986 888999999998776542 22333332 2599999999999999999987654 446
Q ss_pred EEEEEEEec
Q psy12425 79 GTFTINITG 87 (591)
Q Consensus 79 ~~~~l~v~~ 87 (591)
.++.|.|.+
T Consensus 80 ~~~~l~V~~ 88 (89)
T cd04979 80 ATYSLNVLE 88 (89)
T ss_pred eEEEEEEec
Confidence 668887764
No 132
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.40 E-value=1.3e-12 Score=89.41 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=52.2
Q ss_pred CceeeeecCCeEEEEEEeccCCC-ceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
|+...+.+|++++|+|.+.+.|. ..+.|+|||..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 67789999999999999998775 57999999998732 2237899999 99999999999875
No 133
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.39 E-value=6.4e-12 Score=87.02 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=57.1
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
|.++.+.+|+++.|.|.+. .+.+++.|++||..|..+.. ++...++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLLYRD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 7889999999999999986 46789999999999977632 2233333 69999999999999999998764
No 134
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=1.7e-12 Score=86.50 Aligned_cols=68 Identities=28% Similarity=0.592 Sum_probs=56.2
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|+++|.++.....+ . ....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 368999999999999999999998654322 1 2457999999999999999999999998876666554
No 135
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.39 E-value=3.4e-12 Score=89.44 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEeecCC----ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe--eeEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG--SVSGTFTI 83 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g--~~~~~~~l 83 (591)
|++++|.|.+.+.|.+.+.|+++++...... +..+.......+|.|.+++.+|+|.|.|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8999999999999999999999876432211 11111122257899999999999999999998876 55777888
Q ss_pred EEe
Q psy12425 84 NIT 86 (591)
Q Consensus 84 ~v~ 86 (591)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 136
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.39 E-value=1.6e-12 Score=87.75 Aligned_cols=69 Identities=25% Similarity=0.488 Sum_probs=58.2
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|+++|..+....++. .....|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4689999999999999999999887654332 23578999999999999999999999998877766654
No 137
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.38 E-value=2.2e-12 Score=91.12 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCeEEEEEEeccC--CCceEEEEECCEEeecCCc---eeE--EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 10 GDNTKVKIFYAGD--QPMEVSLTKNGRVVQSDDR---FKF--TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 10 G~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~---~~~--~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
|+++.|.|.+.|. |.+.+.|++++..+..... ... .......+|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 8999999999998 8899999998865532211 011 11123468999999999999999999999999888888
Q ss_pred EEE
Q psy12425 83 INI 85 (591)
Q Consensus 83 l~v 85 (591)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 138
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.38 E-value=3.6e-12 Score=88.12 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=63.2
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~ 479 (591)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999998865544444444556789999999999999999999999999999998875
No 139
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.38 E-value=6e-12 Score=93.24 Aligned_cols=91 Identities=26% Similarity=0.441 Sum_probs=68.1
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC----C-ceEEEEeCCeEEEEEc--ceecccceEEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----A-RHHIFAEGDTYTLIIN--SVYGVDADEYV 364 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~~~~~~l~i~--~~~~~d~g~y~ 364 (591)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... . ......++....+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 477777788888999999999999999999999999999887651 2 2222334433333332 34689999999
Q ss_pred EEEEeCCcc-eeeeeEEEE
Q psy12425 365 CRAVNKGGV-KSTKAELII 382 (591)
Q Consensus 365 c~a~n~~g~-~~~~~~l~v 382 (591)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 455666655
No 140
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.37 E-value=7.2e-12 Score=89.96 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=58.4
Q ss_pred Cceeeeec---CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC-CCceEEEEEEEcCCeee
Q psy12425 2 PNALYIPE---GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK-EDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 2 p~~~~v~~---G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~n~~g~~ 77 (591)
|.++.+.+ |+++.|.|.+.|+|.+.++|+|++..+......++...++ .|.|.++.. +|+|.|+|.|.|..|..
T Consensus 8 p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 8 PDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 45555544 4679999999999999999999999885443333433333 688988874 89999999999999986
Q ss_pred EE
Q psy12425 78 SG 79 (591)
Q Consensus 78 ~~ 79 (591)
.+
T Consensus 86 ~S 87 (91)
T cd04967 86 LS 87 (91)
T ss_pred Ee
Confidence 44
No 141
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.37 E-value=1.4e-11 Score=87.86 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=56.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEc
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSN 72 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n 72 (591)
-.++++.+|+++.|.|.+.+.|.+.|.|+|++..+ ....|+.+.... ...+|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 35789999999999999999999999999977533 123444433322 357999999999999999999976
No 142
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.37 E-value=1.2e-11 Score=88.23 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=67.4
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeE-EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKF-TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
.+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+........ ........|.|.++..+|.|.|.|.+.|..|..+.++.
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 46788999999999999999999999999998865543332 22334468999999999999999999999999888777
Q ss_pred EEE
Q psy12425 83 INI 85 (591)
Q Consensus 83 l~v 85 (591)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 764
No 143
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.36 E-value=5.6e-12 Score=87.05 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=56.1
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecC----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSD----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~ 82 (591)
+.|+|.+.+ .|.+.+.|+|+|+.+... .++.+........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 688999999999988643 2233333445578999999999999999999999998877654
No 144
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.36 E-value=6.1e-12 Score=84.09 Aligned_cols=68 Identities=25% Similarity=0.458 Sum_probs=55.0
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~ 476 (591)
|+.+.|.|.+.|.|.|.|.|++++..+.....+.. ....|.|.++. |.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988755443321 23478888874 7899999999999987776655
No 145
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=4.2e-12 Score=86.01 Aligned_cols=70 Identities=24% Similarity=0.518 Sum_probs=57.0
Q ss_pred EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
+.|.|.+.|.|.|.+.|++++..+..... ... ....+|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999877654322 222 22348999999999999999999999999888777766
No 146
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.36 E-value=1.1e-11 Score=89.11 Aligned_cols=82 Identities=24% Similarity=0.368 Sum_probs=61.3
Q ss_pred CeEEeecccccee---ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee-cccceEEEEEEE
Q psy12425 293 PEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAV 368 (591)
Q Consensus 293 p~~~~~~~~~~~~---~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~ 368 (591)
|.|+..+.++.+. +|+.+.|.|.+.|.|.|.+.|++++..+...........++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 4455555554333 47899999999999999999999998886544333332222 68888875 699999999999
Q ss_pred eCCcceee
Q psy12425 369 NKGGVKST 376 (591)
Q Consensus 369 n~~g~~~~ 376 (591)
|..|....
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99997743
No 147
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=4.4e-12 Score=87.45 Aligned_cols=71 Identities=30% Similarity=0.561 Sum_probs=56.9
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeecc-ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGG-HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|+++|..+.... .+.+ ......|.|.++.++|.|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4799999999999999999999886543 3333 2345689999999999999999999999986 34555554
No 148
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.36 E-value=4.7e-12 Score=89.70 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=63.9
Q ss_pred CCceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
.|+.+.+.+|++++|.|.+.+ .|.+.+.|++++..+.... ......|.|.+++.+|+|.|.|.|.|..|....
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 378899999999999999975 7889999999987653321 112348999999999999999999999999888
Q ss_pred EEEE
Q psy12425 80 TFTI 83 (591)
Q Consensus 80 ~~~l 83 (591)
++.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 7765
No 149
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=7.2e-12 Score=89.07 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=63.8
Q ss_pred ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEE
Q psy12425 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVK 475 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~ 475 (591)
...+.+|+.+.|.|.+.|. .|.+.|++++..+... ++.+ ......|.|.+++.+|.|.|.|.|.|..|.. +..+.
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 3457889999999999999 9999999999887543 3332 3345689999999999999999999999985 55666
Q ss_pred EEe
Q psy12425 476 IQI 478 (591)
Q Consensus 476 ~~v 478 (591)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 655
No 150
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=3.9e-12 Score=87.59 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=56.7
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeee-ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..... .....+........|.|.++..+|+|.|.|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 36899999999999999999864321 11112222234458999999999999999999999999888888776
No 151
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.35 E-value=2.1e-11 Score=86.60 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=67.1
Q ss_pred CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecC--CceeEEEe----CCeEEEEEcccCCCC-ceEEEEEEEcC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSD--DRFKFTVL----DDYIIIFIKEIRKED-AGDYTVNLSNS 73 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~Y~c~~~n~ 73 (591)
++...+.+|+++.|.|.+.+.|.| .|.|.+++..|..+ .++.+... +..++|.|.++...| .|.|.|.|.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 356789999999999999777765 67999888877554 56666554 356899999998877 79999999999
Q ss_pred CeeeEEEEEE
Q psy12425 74 SGSVSGTFTI 83 (591)
Q Consensus 74 ~g~~~~~~~l 83 (591)
.|.....+.|
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9999887765
No 152
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.34 E-value=9.9e-12 Score=88.92 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=58.7
Q ss_pred CCeEEEEEeeeccCCCeEEEeeC----CeEeeeccc--eEEEe-------cCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRD----NEVIESGGH--FHVET-------SERHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
|+.+.|.|.+.|.|.|.+.|+++ +..+..+.. ..+.. ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 443332221 11111 122468999999999999999999999999
Q ss_pred cceEEEEEe
Q psy12425 470 DSAIVKIQI 478 (591)
Q Consensus 470 ~~~~~~~~v 478 (591)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 153
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.34 E-value=1.3e-11 Score=88.14 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=59.3
Q ss_pred CeEEeeccccceec---cccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEeCCeEEEEEccee-cccceEEEEEE
Q psy12425 293 PEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVY-GVDADEYVCRA 367 (591)
Q Consensus 293 p~~~~~~~~~~~~~---g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a 367 (591)
|.|...+.+..+.+ +..+.|.|.+.|.|.|.+.|++++..+.. ..++.+ ..+ .|.|.++. ..|+|.|+|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEEE
Confidence 44555555443333 34799999999999999999999887753 334433 333 69998885 68999999999
Q ss_pred EeCCcceee
Q psy12425 368 VNKGGVKST 376 (591)
Q Consensus 368 ~n~~g~~~~ 376 (591)
.|..|....
T Consensus 78 ~N~~G~~~s 86 (93)
T cd05849 78 SNIYGKVRS 86 (93)
T ss_pred EeCcceEEE
Confidence 999997743
No 154
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.34 E-value=9.5e-12 Score=89.10 Aligned_cols=77 Identities=32% Similarity=0.538 Sum_probs=62.9
Q ss_pred cccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425 307 NHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378 (591)
Q Consensus 307 g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~ 378 (591)
|+.+.|.|.+.|.|.|.+.|++++..+ ....++.+..++ .|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 678999999999999999999987643 123344443333 699999999999999999999999999999
Q ss_pred EEEEecCC
Q psy12425 379 ELIIMTAP 386 (591)
Q Consensus 379 ~l~v~~~p 386 (591)
.|.|....
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99987643
No 155
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.33 E-value=2.4e-11 Score=87.46 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=60.1
Q ss_pred CeEEeeccccceecc---ccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEccee-cccceEEEEE
Q psy12425 293 PEIIVPLRNANAIQN---HNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVY-GVDADEYVCR 366 (591)
Q Consensus 293 p~~~~~~~~~~~~~g---~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~ 366 (591)
|.+...+.+..+.+| +.+.|.|.+.|.|.|.+.|++++..+.... ++.+ ..+ .|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAG---NLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECC---eEEEccCCccCcCEEEEEE
Confidence 445555555554444 689999999999999999999998886433 3333 233 68888765 5999999999
Q ss_pred EEeCCcceee
Q psy12425 367 AVNKGGVKST 376 (591)
Q Consensus 367 a~n~~g~~~~ 376 (591)
|.|..|....
T Consensus 78 A~N~~G~~~s 87 (94)
T cd05850 78 AINRCGTVVS 87 (94)
T ss_pred EEcCcCcEEE
Confidence 9999997743
No 156
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=7.6e-12 Score=84.49 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=57.0
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+.. .++.+. ....|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999876643 334333 3457999999999999999999999999888777754
No 157
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.31 E-value=1.3e-11 Score=85.51 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=62.9
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~ 379 (591)
....+.+|+.+.|.|.+.+. .+.+.|+++|..+....++.+. +. +|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 34567899999999999986 5689999999998776666553 22 7999999999999999999999887766555
Q ss_pred EE
Q psy12425 380 LI 381 (591)
Q Consensus 380 l~ 381 (591)
+.
T Consensus 77 v~ 78 (79)
T cd04973 77 VN 78 (79)
T ss_pred Ee
Confidence 54
No 158
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.31 E-value=1.3e-11 Score=84.43 Aligned_cols=70 Identities=27% Similarity=0.516 Sum_probs=56.8
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeee--ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIES--GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+.. ..++... ....|.|.+++..|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 46999999999999999999988763 3343332 34569999999999999999999999985 66666665
No 159
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.31 E-value=8e-12 Score=86.14 Aligned_cols=65 Identities=23% Similarity=0.420 Sum_probs=52.3
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCC----CcceeEEEEEEcCCCcc
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN----VDTAPYRVVAENDLGMD 470 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~a~n~~g~~ 470 (591)
+.|.|.+.|.|.|.++|++++..+.......+........|.|..+.. +|+|.|.|.|.|..|..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 478999999999999999999988644333334444567888988754 68999999999999975
No 160
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.31 E-value=2.2e-11 Score=83.72 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=59.1
Q ss_pred CCeEEEEEeeeccCCCeEEEee-CCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 403 GENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++.+. ....|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 56655544433332 2457999999999999999999999999888777654
No 161
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.30 E-value=1.5e-11 Score=87.05 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=61.2
Q ss_pred ceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 3 NALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
....+.+|.++.|.|...+ .|.|.+.|+||++++....+. +. ....|.|.++..+|+|.|+|.|.|..+..
T Consensus 3 ~~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 3 YKQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred ceEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 3567999999999998754 257899999999998765433 22 33489999999999999999999988776
Q ss_pred EEEEEE
Q psy12425 78 SGTFTI 83 (591)
Q Consensus 78 ~~~~~l 83 (591)
...++.
T Consensus 79 ~~~~t~ 84 (92)
T cd05757 79 QYNVTR 84 (92)
T ss_pred EEEEEE
Confidence 554443
No 162
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=1.1e-11 Score=84.63 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=57.9
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
+.|.|.+.|.|.|.+.|++++..+.... . ........|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999999999999987764321 1 22234568999999999999999999999999888888776
No 163
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=1.8e-11 Score=87.43 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=57.9
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCC----eEeeecc-ce-EEE-------ecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDN----EVIESGG-HF-HVE-------TSERHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~----~~~~~~~-~~-~~~-------~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
|+.+.|.|.+.|.|.|.|+|++++ ..+.... .+ ... .......|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999964 2222111 11 111 1123457999999999999999999999999
Q ss_pred cceEEEEEe
Q psy12425 470 DSAIVKIQI 478 (591)
Q Consensus 470 ~~~~~~~~v 478 (591)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888876
No 164
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.30 E-value=4.1e-11 Score=87.33 Aligned_cols=88 Identities=26% Similarity=0.378 Sum_probs=68.0
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCC--CceEEEEe----CCeEEEEEcceeccc-ceEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY 363 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y 363 (591)
||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... +...+|.|.++..+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 455543 345668899999999999999999 69999998877643 45665543 234589999999955 8999
Q ss_pred EEEEEeCCcceeeeeEE
Q psy12425 364 VCRAVNKGGVKSTKAEL 380 (591)
Q Consensus 364 ~c~a~n~~g~~~~~~~l 380 (591)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999987666544
No 165
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.29 E-value=1.4e-11 Score=85.25 Aligned_cols=70 Identities=26% Similarity=0.499 Sum_probs=57.7
Q ss_pred EEEEEeeec-cCCCeEEEeeCCeEeeeccceE---EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 406 VVVKIPFTG-YPKPKITWYRDNEVIESGGHFH---VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
+.|.|.+.| .|.|.+.|++++..+....... +........|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 9999999999999887544332 334455789999999999999999999999998766553
No 166
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.29 E-value=9.8e-12 Score=88.86 Aligned_cols=83 Identities=40% Similarity=0.630 Sum_probs=69.5
Q ss_pred CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc-eEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVY 560 (591)
Q Consensus 483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~ 560 (591)
++|.++.+..++.+++.|+|++|. +++..+.+|.|.++...... |... .......+.|.+|.|++.|.|+|+|.|..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 367889999999999999999886 56679999999999877665 5444 33344589999999999999999999999
Q ss_pred cCCCCC
Q psy12425 561 GRSDPS 566 (591)
Q Consensus 561 G~~~~s 566 (591)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 988764
No 167
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=1.7e-11 Score=84.09 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=50.5
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCC----cceeEEEEEEcCCCccc
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV----DTAPYRVVAENDLGMDS 471 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~~g~y~c~a~n~~g~~~ 471 (591)
+.|.|.+.|.|.|+++|++++..+.......+........|.|..+... |.|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 4799999999999999999998874333323333344567888777643 78999999999999863
No 168
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=5.2e-11 Score=85.25 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=62.4
Q ss_pred eccccceeccccEEEEEEEcCCCCCeeEEec-CCccCCCCCceEEEEe-CCeEEEEEcceecccceEEEEEEEeCCcc-e
Q psy12425 298 PLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGV-K 374 (591)
Q Consensus 298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~ 374 (591)
.+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+... +...+|+|.+++.+|+|.|+|.|.|..|. .
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES 84 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence 345567889999999999999975 999997 5555554445444433 34568999999999999999999998654 3
Q ss_pred eeeeEEE
Q psy12425 375 STKAELI 381 (591)
Q Consensus 375 ~~~~~l~ 381 (591)
..++.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 4444443
No 169
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.28 E-value=4.4e-11 Score=86.78 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=61.4
Q ss_pred CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
+++++.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....|+.+.. .+....|.|.+++.+|+|.|.|.+.
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 467899999999999999988888999998633211 1224554422 2345689999999999999999998
Q ss_pred cCCeeeEEEEEEEE
Q psy12425 72 NSSGSVSGTFTINI 85 (591)
Q Consensus 72 n~~g~~~~~~~l~v 85 (591)
+... .+..+.|+|
T Consensus 83 ~~~~-~~~~~~~~v 95 (95)
T cd05717 83 TMPV-QTAKATVTV 95 (95)
T ss_pred cCCC-ceEEEEEEC
Confidence 7653 355555543
No 170
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.28 E-value=2.8e-11 Score=85.57 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=63.2
Q ss_pred ecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 400 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
...|+.+.|.|.+.|.|.|.+.|++++..+....... .......|.|.++..+|+|.|.|.|.|..|..+..+.|.|
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 4669999999999999999999999998775433322 2234578999999999999999999999998877776653
No 171
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.28 E-value=1.8e-11 Score=85.18 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=52.5
Q ss_pred EEEEEEeccCCCceEEEEECCEEee--------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEEEE
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQ--------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTI 83 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~~l 83 (591)
|+|.|.+.|.|.|.+.|+|++.... ...++.+ .. ..+|.|.+++.+|+|.|.|.|.|..|.. +.++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--LS-NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--ec-CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999743211 1233332 22 2479999999999999999999999977 555665
Q ss_pred EE
Q psy12425 84 NI 85 (591)
Q Consensus 84 ~v 85 (591)
.|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 53
No 172
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.28 E-value=2.6e-11 Score=83.25 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=49.2
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCC----CcceeEEEEEEcCCCcc
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN----VDTAPYRVVAENDLGMD 470 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~a~n~~g~~ 470 (591)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|..+.. +|.|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 468999999999999999999876432222223333457888887642 46899999999999976
No 173
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.27 E-value=3.1e-11 Score=86.11 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=62.4
Q ss_pred cccceeccccEEEEEEE-cCCCCCeeEEecCCccCCCC-CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee-e
Q psy12425 300 RNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-T 376 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~-~ 376 (591)
.+..+.+|+.+.|.|.+ .|.|.+.+.|++++..+... .++.+...+ +|.|.++..+|+|.|+|.|.|..|... .
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceeee
Confidence 45667899999999998 79999999999998887653 344443333 799999999999999999999998764 3
Q ss_pred eeEE
Q psy12425 377 KAEL 380 (591)
Q Consensus 377 ~~~l 380 (591)
.+.|
T Consensus 81 ~~~l 84 (86)
T cd05724 81 AARL 84 (86)
T ss_pred eEEE
Confidence 3443
No 174
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.26 E-value=4.9e-11 Score=86.51 Aligned_cols=82 Identities=27% Similarity=0.412 Sum_probs=62.1
Q ss_pred eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc--eEEEEeCCeEEEEEcce-----ecccceEEEEEEEe
Q psy12425 297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR--HHIFAEGDTYTLIINSV-----YGVDADEYVCRAVN 369 (591)
Q Consensus 297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~a~n 369 (591)
..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... +.+..++ ++.|.++ .+.|.|.|+|.|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 344566678899999999999999999999999988865433 3333333 4666665 58899999999999
Q ss_pred C-Ccce-eeeeEEE
Q psy12425 370 K-GGVK-STKAELI 381 (591)
Q Consensus 370 ~-~g~~-~~~~~l~ 381 (591)
. .|.. +..+.|.
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 9 8876 4444443
No 175
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.24 E-value=5.1e-11 Score=84.23 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=55.7
Q ss_pred eeeecCCeEEEEEEeccCCCceEEEEECCEEeec--------------CCceeEEE---eCCeEEEEEcccCCCCceEEE
Q psy12425 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS--------------DDRFKFTV---LDDYIIIFIKEIRKEDAGDYT 67 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~ 67 (591)
+.+.+|++|+|.|.+.+.+.+.+.|+++++.... ..|+.+.. ..+..+|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 6789999999999999999999999987743211 12222222 334578999999999999999
Q ss_pred EEEEcCCee
Q psy12425 68 VNLSNSSGS 76 (591)
Q Consensus 68 c~~~n~~g~ 76 (591)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999987655
No 176
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.24 E-value=2.6e-10 Score=81.88 Aligned_cols=84 Identities=30% Similarity=0.499 Sum_probs=71.8
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~ 80 (591)
|..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.+++..|+|.|.|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 5678999999999999999888899999998 888876666666665556799999999999999999999888877666
Q ss_pred EEEEE
Q psy12425 81 FTINI 85 (591)
Q Consensus 81 ~~l~v 85 (591)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 177
>smart00409 IG Immunoglobulin.
Probab=99.24 E-value=2.6e-10 Score=81.88 Aligned_cols=84 Identities=30% Similarity=0.499 Sum_probs=71.8
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~ 80 (591)
|..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.+++..|+|.|.|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 5678999999999999999888899999998 888876666666665556799999999999999999999888877666
Q ss_pred EEEEE
Q psy12425 81 FTINI 85 (591)
Q Consensus 81 ~~l~v 85 (591)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 178
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.24 E-value=3.1e-11 Score=86.25 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=63.0
Q ss_pred ceeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeec--cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 397 TAYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
...+.+|+.+.|.|.+.+ .|.+.|.|++++..+... ....+.. ....|.|.++..+|+|.|.|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 345678999999999998 689999999998764321 1122222 2468999999999999999999999999
Q ss_pred cceEEEEEe
Q psy12425 470 DSAIVKIQI 478 (591)
Q Consensus 470 ~~~~~~~~v 478 (591)
....+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 888877764
No 179
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=4.3e-11 Score=84.21 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=56.8
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCe---Ee-eeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNE---VI-ESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~---~~-~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
|+.+.|.|.+.|.|.|.+.|++++. .+ .....+ ..........|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999742 11 111110 001112346899999999999999999999999988888776
Q ss_pred e
Q psy12425 478 I 478 (591)
Q Consensus 478 v 478 (591)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 180
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.23 E-value=4e-11 Score=82.56 Aligned_cols=70 Identities=20% Similarity=0.433 Sum_probs=55.6
Q ss_pred eccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425 298 PLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375 (591)
Q Consensus 298 ~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~ 375 (591)
.++++.+.+|+.+.|.|.+.|.|.| .|.|++++..+... .. .....|.|.++ .|.|.|.|.|.|..|...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 3456778999999999999999999 79999999887541 11 12236888877 478999999999999664
No 181
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.23 E-value=6.8e-11 Score=78.85 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=51.1
Q ss_pred EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377 (591)
Q Consensus 310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~ 377 (591)
+.|.|.+.|.|.|.+.|++++..+..... ....++ .+|.|.++..+|+|.|+|.|.|........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 46899999999999999999988765422 122233 379999999999999999999976554433
No 182
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=4.5e-11 Score=83.38 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=57.3
Q ss_pred eeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EEE
Q psy12425 4 ALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTF 81 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~ 81 (591)
...|.+|++++|.|.+.+ .+.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.+.+..|... ..+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 446999999999999854 567789999999876421 1234799999999999999999999988653 334
Q ss_pred EEE
Q psy12425 82 TIN 84 (591)
Q Consensus 82 ~l~ 84 (591)
.|.
T Consensus 80 ~i~ 82 (83)
T cd05753 80 SIT 82 (83)
T ss_pred EEE
Confidence 444
No 183
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.22 E-value=3.4e-10 Score=88.82 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=81.7
Q ss_pred EEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCC
Q psy12425 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDN 426 (591)
Q Consensus 349 ~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~ 426 (591)
+|.|.+++..|+|.|.|.+.+..|.......|.|..+|.+...+. ......|..+.|.|.+.|. |. +.|.|++++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~---~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE---KLVSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC---CceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 689999999999999999999888888889999999888765442 2223368889999999986 54 489999998
Q ss_pred eEeee-----cc-c---eEEEecC---CeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425 427 EVIES-----GG-H---FHVETSE---RHAILTIRDASNVDTAPYRVVAENDL 467 (591)
Q Consensus 427 ~~~~~-----~~-~---~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~ 467 (591)
..... .. . .....++ -.+.|.+..-..++...|+|.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 54211 11 0 1111111 13455665555556779999998764
No 184
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.22 E-value=3.2e-11 Score=84.74 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=56.3
Q ss_pred ceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEee--cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 3 NALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQ--SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
+++.|.+|+.+.|.|.. .|.|.+.|.|++++.++. .+.+. +.. .....|.|.+++.+|+|.|.|.|.|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~-~~~-~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR-FVS-QTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe-EEe-CCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 46789999999999976 678999999999987642 22332 222 22348999999999999999999987543
No 185
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.20 E-value=3.6e-10 Score=79.26 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=68.2
Q ss_pred eeeeecCCeEEEEEEeccCCCce-EEEEECCEEeecCCceeEEEeC-----CeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPME-VSLTKNGRVVQSDDRFKFTVLD-----DYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
.++|.+|+++.|.|.+.+.|+|+ +.|.+++..+.......+.... -.+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 57899999999999999999997 9999998866544332222222 23789999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy12425 78 SGTFTINIT 86 (591)
Q Consensus 78 ~~~~~l~v~ 86 (591)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888888875
No 186
>KOG0196|consensus
Probab=99.18 E-value=4.8e-10 Score=105.95 Aligned_cols=134 Identities=25% Similarity=0.306 Sum_probs=105.8
Q ss_pred CeeEEEEeccCCCcceeEEEEEEcCCCcc----ceEEEEEec---CCCCCCCCCeeeeecCCeeEEEeeccccCCCccee
Q psy12425 442 RHAILTIRDASNVDTAPYRVVAENDLGMD----SAIVKIQIS---DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT 514 (591)
Q Consensus 442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~----~~~~~~~v~---~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~ 514 (591)
....+.+.+|.+...|+|.+.|.|.+..- .....+.+. ..|++...+++...+.++++|+|..|..++| .+.
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~il 474 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VIL 474 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cce
Confidence 46789999999999999999999987533 223334333 3566667788888899999999998876666 699
Q ss_pred eEEEEeeeCCCCce-EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEecc
Q psy12425 515 NYIVEKREHPMSSW-IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576 (591)
Q Consensus 515 ~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~ 576 (591)
.|++.|.+...... ........+..+|.+|.|++.|.|+|+|+..+|.|..|....+.|.+.
T Consensus 475 dYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 475 DYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred eEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 99999998753222 223445567899999999999999999999999999999987766664
No 187
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.17 E-value=2.4e-10 Score=81.12 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=58.7
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECC--EEe----ecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE-cCCee
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RVV----QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS-NSSGS 76 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~-n~~g~ 76 (591)
.+.+.+|+++.|.|.. +.|.+.+.|+|.+ ... ....++. ..+ ..|.|.+++++|+|.|.|.+. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--HTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--Eec--CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 4678999999999997 4888999999843 221 1222332 222 369999999999999999998 56666
Q ss_pred eEEEEEEEEec
Q psy12425 77 VSGTFTINITG 87 (591)
Q Consensus 77 ~~~~~~l~v~~ 87 (591)
....++|.|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 67778888764
No 188
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.17 E-value=7e-10 Score=78.32 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=56.9
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
+++++.+|+++.|+|.+.+.....+.|++.+..+ ..+.|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5799999999999999988766778888766432 3456776654 455678999999999999999999753
No 189
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.16 E-value=1.9e-10 Score=79.40 Aligned_cols=70 Identities=21% Similarity=0.494 Sum_probs=55.5
Q ss_pred EEEEEeeec-cCCCeEEEeeCCeEeeecc----ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 406 VVVKIPFTG-YPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
+.|+|.+.+ .|.+.+.|+++|..+.... ++.+........|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999875 6888999999998885322 233333445688999999999999999999999998876654
No 190
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.16 E-value=1.5e-10 Score=81.72 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCeEEEEEeeecc--CCCeEEEeeCCeEeeeccc---eEE--EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425 403 GENVVVKIPFTGY--PKPKITWYRDNEVIESGGH---FHV--ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475 (591)
Q Consensus 403 g~~~~l~c~~~~~--p~~~v~W~~~~~~~~~~~~---~~~--~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~ 475 (591)
|+.+.|.|.+.+. |.+.+.|.+++..+..... ... ........|+|.+++..|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999999 8899999987765432111 011 11123578999999999999999999999999988888
Q ss_pred EEe
Q psy12425 476 IQI 478 (591)
Q Consensus 476 ~~v 478 (591)
|.+
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 191
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.14 E-value=2.4e-10 Score=76.25 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=52.0
Q ss_pred cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425 9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g 75 (591)
+|+++.|.|.+.+.|.+.+.|++++..+.. ... .......|.|.+++..|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999998899999999999988862 222 223445899999999999999999988754
No 192
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.14 E-value=4.3e-10 Score=79.19 Aligned_cols=72 Identities=32% Similarity=0.537 Sum_probs=58.5
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee-eEEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFT 82 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~~~~~ 82 (591)
+..+.+|+++.|.|.+.+.|...+.|++++..+..... .|.|..+..+|.|.|+|.+.+..+. .+..+.
T Consensus 8 ~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 8 PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 46789999999999999998899999999988763321 1777889999999999999996653 355566
Q ss_pred EEE
Q psy12425 83 INI 85 (591)
Q Consensus 83 l~v 85 (591)
|.|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 665
No 193
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.14 E-value=4.7e-10 Score=80.50 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=57.8
Q ss_pred CeEEeecccccee---ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee-cccceEEEEEEE
Q psy12425 293 PEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAV 368 (591)
Q Consensus 293 p~~~~~~~~~~~~---~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~ 368 (591)
|.|...+.+..+. .+..+.|.|.+.|.|.|.+.|++++..+...........++ .|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 4445444544333 34679999999999999999999998874322222222222 68888876 489999999999
Q ss_pred eCCccee
Q psy12425 369 NKGGVKS 375 (591)
Q Consensus 369 n~~g~~~ 375 (591)
|..|...
T Consensus 80 N~~G~~~ 86 (91)
T cd04967 80 NIVGTVL 86 (91)
T ss_pred cCCCEEE
Confidence 9999764
No 194
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.13 E-value=4.4e-10 Score=78.76 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=57.7
Q ss_pred CCeEEEEEeeeccCCCeEEEeeCCeEeeecc----ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC--ccceEEEE
Q psy12425 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAPYRVVAENDLG--MDSAIVKI 476 (591)
Q Consensus 403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g--~~~~~~~~ 476 (591)
|+.+.|.|.+.+.|.+.+.|.+++....... ...+........|.|.+++.+|+|.|.|.|.|..+ ..+.++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6789999999999999999998775432111 11111222367899999999999999999999876 55677777
Q ss_pred Eec
Q psy12425 477 QIS 479 (591)
Q Consensus 477 ~v~ 479 (591)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 195
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.13 E-value=2.5e-10 Score=79.46 Aligned_cols=69 Identities=28% Similarity=0.563 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCCCeeEEecCCccCC--------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEE
Q psy12425 310 AQFQCTITGCPKPTISWLKGSREIT--------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 380 (591)
Q Consensus 310 ~~l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l 380 (591)
+.|.|.+.|.|.|.+.|++++.... ...++.+..++ +|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC---eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4799999999999999998643211 22334333333 79999999999999999999999976 444444
Q ss_pred E
Q psy12425 381 I 381 (591)
Q Consensus 381 ~ 381 (591)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 3
No 196
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=2e-10 Score=78.58 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=53.0
Q ss_pred eEEeeccccceeccccEEEEEEEcCCCC-CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425 294 EIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
.+...+....+.+|+.+.|.|.+.+.|. ..+.|++++..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4455556677899999999999999876 47999999877621 1236889999 99999999999874
No 197
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.13 E-value=1.4e-09 Score=77.29 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=67.9
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCC--CceEEEEe----CCeEEEEEcceeccc-ceEE
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY 363 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y 363 (591)
||.+ .......+.+|+.+.|.|.+.+.|.| .|.|..++..+..+ .++.+... +...+|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4555 44466778999999999999888876 57887776666443 46666543 467799999998767 7999
Q ss_pred EEEEEeCCcceeeeeEE
Q psy12425 364 VCRAVNKGGVKSTKAEL 380 (591)
Q Consensus 364 ~c~a~n~~g~~~~~~~l 380 (591)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999988766554
No 198
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.13 E-value=6e-10 Score=78.34 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=60.5
Q ss_pred eeeeecCCeEEEEEEec-----------cCCCceEEEEECCEEeecCCc-----eeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425 4 ALYIPEGDNTKVKIFYA-----------GDQPMEVSLTKNGRVVQSDDR-----FKFTVLDDYIIIFIKEIRKEDAGDYT 67 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~Y~ 67 (591)
.+.+.+|+.+.|.|... ......+.|+|++..+..... .++...++ .|.|..+..+|+|.|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 56799999999999961 123458999999755544321 24444444 8999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEE
Q psy12425 68 VNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 68 c~~~n~~g~~~~~~~l~v 85 (591)
|.++|.......++.|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999999877777776654
No 199
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.13 E-value=4.1e-10 Score=79.15 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCeEEEEEEeccCC--CceEEEEECCEEeecC---CceeE---EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 10 GDNTKVKIFYAGDQ--PMEVSLTKNGRVVQSD---DRFKF---TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 10 G~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|+++.|.|.+.+++ ...+.|.+++..+... ...+. .......+|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 89999999998755 4578999887643211 11011 1122357899999999999999999999999888888
Q ss_pred EEEEec
Q psy12425 82 TINITG 87 (591)
Q Consensus 82 ~l~v~~ 87 (591)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 888863
No 200
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.12 E-value=2e-10 Score=80.55 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=56.9
Q ss_pred ceeeeecCCeEEEEEE-eccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCce-EEEEEEEcCCe
Q psy12425 3 NALYIPEGDNTKVKIF-YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG-DYTVNLSNSSG 75 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~~g 75 (591)
+.+.|.+|+.+.|.|. ..|.|.|.|.|++++...-.. ..++....+ ..|.|.+++++|.| .|.|.|.|...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCC-ceEEEEEEehhhCCCCeEEEEEcccc
Confidence 5789999999999997 689999999999887553332 234444443 48999999999999 89999998753
No 201
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.11 E-value=1.2e-09 Score=77.94 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=64.6
Q ss_pred eecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEE-EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425 399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477 (591)
Q Consensus 399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~ 477 (591)
.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.|.|..|....++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 456799999999999999999999999988764443332 2234456899999999999999999999999987777665
Q ss_pred e
Q psy12425 478 I 478 (591)
Q Consensus 478 v 478 (591)
+
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 3
No 202
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.09 E-value=6e-10 Score=78.55 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred eeeeecCCeEEEEEEe-cc----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 4 ALYIPEGDNTKVKIFY-AG----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
+..+.+|.+..|.|.- .+ .+.+.+.||||++++....+ ++....+...|.|.++.++|+|.|+|.+.+..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~-~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE-KFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc-ceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 4568899999999973 22 46779999999999875532 22232234479999999999999999999987654
No 203
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.08 E-value=1.4e-09 Score=78.10 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=59.5
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCC--------ccCCCCCceEEEEe-CCeEEEEEcceecccceEEEEEEEeC
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGS--------REITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
+++.+.+|+++.|.|.+.+.|.+.+.|++.+ .......++.+... ....+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 4667899999999999999999999998632 22223445555333 35578999999999999999999874
Q ss_pred CcceeeeeEEE
Q psy12425 371 GGVKSTKAELI 381 (591)
Q Consensus 371 ~g~~~~~~~l~ 381 (591)
.+ ....+.|.
T Consensus 85 ~~-~~~~~~l~ 94 (95)
T cd07701 85 PV-KTSKAYLT 94 (95)
T ss_pred cC-ccEEEEEE
Confidence 32 24444443
No 204
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.05 E-value=2.2e-09 Score=74.50 Aligned_cols=67 Identities=22% Similarity=0.417 Sum_probs=54.7
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC-ceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
.+..+..|+++.|.|.+.+ +.+.+.|++++..+.... ++.+ .++ .|.|.+++..|+|.|+|.|.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 4566889999999999864 678999999999887653 4433 333 59999999999999999998864
No 205
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.03 E-value=7.3e-10 Score=73.66 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCCe--EEEEEcccCCCCceEEEEEE
Q psy12425 10 GDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDY--IIIFIKEIRKEDAGDYTVNL 70 (591)
Q Consensus 10 G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~c~~ 70 (591)
|++++|.|.+ .+.+...+.|+|++..+.............. ..|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 7788899999999876544433333322222 13999999999999999986
No 206
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.02 E-value=2.2e-09 Score=75.94 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=60.1
Q ss_pred ccccceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425 299 LRNANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377 (591)
Q Consensus 299 ~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~ 377 (591)
+....+..|+.++|.|.+.+ .|.+.+.|++++..+.... . . ....|.|.++..+|+|.|.|.|.|..|....+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~-~--~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M-D--FNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c-c--cCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 34566789999999999975 7888999999876653321 1 1 12379999999999999999999999988777
Q ss_pred eEE
Q psy12425 378 AEL 380 (591)
Q Consensus 378 ~~l 380 (591)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 655
No 207
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.02 E-value=7.5e-09 Score=73.92 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=55.3
Q ss_pred cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEee--------eccceEEEec-CCeeEEEEeccCCCcceeEEEEEEc
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE--------SGGHFHVETS-ERHAILTIRDASNVDTAPYRVVAEN 465 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n 465 (591)
....+..|+++.|.|.+.+.|.+.+.|++++..+. ...++.+... .....|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 45667899999999999999999999998775431 2234443322 2467999999999999999999988
No 208
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.00 E-value=5.3e-09 Score=73.45 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=68.6
Q ss_pred ccceeecCCCeEEEEEeeeccCCCe-EEEeeCCeEeeeccceEEEecC-----CeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425 395 RDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGGHFHVETSE-----RHAILTIRDASNVDTAPYRVVAENDLG 468 (591)
Q Consensus 395 ~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g 468 (591)
.....+..|+.+.|.|.++++|.|+ +.|.+++..+.......+.... ..+.|.|..+..++.|.|+|.|.|..+
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 3556789999999999999999998 9999988765432221122211 358899999999999999999999999
Q ss_pred ccceEEEEEec
Q psy12425 469 MDSAIVKIQIS 479 (591)
Q Consensus 469 ~~~~~~~~~v~ 479 (591)
..+.++.|.+.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999988875
No 209
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.00 E-value=3.3e-09 Score=72.90 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=58.8
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEE
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGT 80 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~ 80 (591)
+.++|.+|+++.|.|...+. .+.+.|+++|..+..+.++..... -|.|..+++.|+|.|.|.+.- .|-. ...
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~E-~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSEE-EGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEec-CCCeEEEEE
Confidence 57899999999999999865 669999999999876655544322 377999999999999999873 3433 333
Q ss_pred EEEEE
Q psy12425 81 FTINI 85 (591)
Q Consensus 81 ~~l~v 85 (591)
..|.|
T Consensus 78 y~l~v 82 (85)
T cd05872 78 YSLNV 82 (85)
T ss_pred EEEEE
Confidence 44444
No 210
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.00 E-value=2.2e-09 Score=76.68 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=58.9
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc-eee
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV-KST 376 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~~~ 376 (591)
..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.++..+|+|.|+|.|.+..+. ...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 3456788999999999987 888999999987765432 11222221 24999999999999999999876543 345
Q ss_pred eeEEEEe
Q psy12425 377 KAELIIM 383 (591)
Q Consensus 377 ~~~l~v~ 383 (591)
+..|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 5666654
No 211
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.00 E-value=2.1e-09 Score=76.19 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=60.5
Q ss_pred eeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425 398 AYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472 (591)
Q Consensus 398 ~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~ 472 (591)
..+..|....|.|...+ +|.|.+.|++++.++...... +. ....|.|.++..+|+|.|+|.|.|..|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 45677999999998753 257899999999988754433 22 5678999999999999999999999888766
Q ss_pred EEEEEe
Q psy12425 473 IVKIQI 478 (591)
Q Consensus 473 ~~~~~v 478 (591)
.+...+
T Consensus 81 ~~t~t~ 86 (92)
T cd05757 81 NVTRTI 86 (92)
T ss_pred EEEEEE
Confidence 554443
No 212
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.98 E-value=1.2e-08 Score=80.11 Aligned_cols=116 Identities=13% Similarity=0.281 Sum_probs=75.4
Q ss_pred eeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC-CeeE
Q psy12425 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-PTIS 325 (591)
Q Consensus 248 ~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~ 325 (591)
+|.|.+++..|+|.|.|.+.+..|.. .....+.+. .+|.+...+.......|..+.|.|.+.|. |. +.|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~---~~~~~l~v~-----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~ 73 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA---QQIIQLSVS-----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVE 73 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce---eeEEEEEEe-----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEE
Confidence 58899999999999999998865543 234455554 46777665555445578899999999995 54 5899
Q ss_pred EecCCccCCC----CCceE---EE--EeCC---eEEEEEcceecccceEEEEEEEeCC
Q psy12425 326 WLKGSREITP----SARHH---IF--AEGD---TYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 326 W~~~~~~~~~----~~~~~---~~--~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
|++++..... ..... .. .++. ...|.+..-...+...|+|.+.+..
T Consensus 74 W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 74 WTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 9998754221 01111 11 1221 1245555444445678999997753
No 213
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.95 E-value=0.0002 Score=79.58 Aligned_cols=263 Identities=16% Similarity=0.094 Sum_probs=144.9
Q ss_pred CcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecc-c-cceeccccEEEEEEEcCCCCCeeEEecCCccCCC
Q psy12425 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR-N-ANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335 (591)
Q Consensus 258 ~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~ 335 (591)
..|.+++.|.|..|... .+..+.+..+.. ...+..... . ..+..|..+.|.-.+.........|..++..-..
T Consensus 1754 G~y~VtVta~N~vss~~---~s~~V~VqepV~--GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~ 1828 (2740)
T TIGR00864 1754 GLHLVTMKAFNELGSAN---ASEEVDVQEPIS--GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM 1828 (2740)
T ss_pred ceEEEEEEEEccccccc---eeEEEEEEeccc--cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc
Confidence 45777888899988553 345555554332 122221111 1 1344577777777754333447778776433111
Q ss_pred CCceEEEEeCCeEEEEEcceecccceEEEEE--EEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeee
Q psy12425 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT 413 (591)
Q Consensus 336 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~--a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~ 413 (591)
+.... .+..+.|.|+.. |.|..+....+..+.|+.+..-.... .....+..|+.++|.+...
T Consensus 1829 ---------gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~--as~~~~~~n~~v~fsa~l~ 1892 (2740)
T TIGR00864 1829 ---------GKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK--ASKKIAAIGEKVEFQILLA 1892 (2740)
T ss_pred ---------cceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe--cccccccCCCEEEEEEEec
Confidence 11111 345677877765 88999988888888888876432211 1223456799999999998
Q ss_pred ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeee-
Q psy12425 414 GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED- 492 (591)
Q Consensus 414 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~- 492 (591)
..+...+.|..++..-. +...+. . ....-..-..|..++.|.|.++.......+.|..+ ...+.+..
T Consensus 1893 ~GS~Vtf~w~fGdgs~~------~~t~~~--t-~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~---V~gL~I~~~ 1960 (2740)
T TIGR00864 1893 AGSAVNFRLQIGGAAPE------VLQPGP--R-FSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA---VRGLQIPDC 1960 (2740)
T ss_pred CCCceEEEEEeCCCCce------eecCCC--e-EEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe---ccceEecCC
Confidence 88888999987643211 111111 1 11223344567888999999999887777777543 22232211
Q ss_pred -------ecCCeeEEEeeccccCCCcceeeEEEEeeeC---CCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425 493 -------IGHDSLALVWRAPIWDGGSNITNYIVEKREH---PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562 (591)
Q Consensus 493 -------~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~ 562 (591)
.........++ .|.++ .|.+++... ++..|... +....|+.. ....|.++|+|.|.+|.
T Consensus 1961 c~~~~~~g~~~tF~A~v~-----~g~~V-~f~W~f~~~~~~g~~~~~~~--G~~vty~~~---~~G~~~I~v~A~N~l~s 2029 (2740)
T TIGR00864 1961 CAAGIATGEEKNFTANVQ-----RGKPV-AFAWTFDLHHLHGDSLVIHM--GKDVSYTAE---AAGLLEIQLGAFNALGA 2029 (2740)
T ss_pred cccceecCceEEEEEEEe-----cCCce-EEEEEeeecccCCCcceeec--CCceEEccC---CCcEEEEEEEEEcccCc
Confidence 11112222232 23232 355543321 12222222 222344432 34479999999999997
Q ss_pred CC
Q psy12425 563 SD 564 (591)
Q Consensus 563 ~~ 564 (591)
..
T Consensus 2030 ~n 2031 (2740)
T TIGR00864 2030 EN 2031 (2740)
T ss_pred cc
Confidence 53
No 214
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.93 E-value=6.3e-09 Score=70.35 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=48.9
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCceeEE--EeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
+.|+|...+ +|++.|.||||+++|......... ......+|.|.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 789999865 899999999999999653211000 00123479999999999999999999997754
No 215
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.91 E-value=8.9e-09 Score=77.23 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=57.1
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCE---E---e--------ecCCceeEEEe--CCeEEEEEcccCCCCceE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR---V---V--------QSDDRFKFTVL--DDYIIIFIKEIRKEDAGD 65 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~---~---~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~ 65 (591)
|..+.+.+|++|.|.|.+.+.+...+.|+|... . + ....|+.+... ....+|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 678999999999999999887888999998531 1 0 12244544432 356899999999999999
Q ss_pred EEEEEEcCC
Q psy12425 66 YTVNLSNSS 74 (591)
Q Consensus 66 Y~c~~~n~~ 74 (591)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998764
No 216
>PHA03376 BARF1; Provisional
Probab=98.91 E-value=1.2e-07 Score=73.18 Aligned_cols=123 Identities=15% Similarity=0.284 Sum_probs=80.6
Q ss_pred ccceeccccEEEEEEEc---CCCCCeeEEecCCc-----------------cCCCCCceEEEEeCCeEEEEEcceecccc
Q psy12425 301 NANAIQNHNAQFQCTIT---GCPKPTISWLKGSR-----------------EITPSARHHIFAEGDTYTLIINSVYGVDA 360 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~---~~p~~~v~W~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 360 (591)
.+....|+.+.|+|... ..+...|.|++.+. +.....+..+..+.+..+|.|.+++..|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 34567899999999975 23556799999432 11112234455566888999999999999
Q ss_pred eEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCC
Q psy12425 361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426 (591)
Q Consensus 361 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~ 426 (591)
|.|+|..............|.+..+-...+... ......-+..++.|.+.|.|.|.++|.-+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~---~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE---RSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEec---cccCCCCCeeEEEEecCCcCCchheecccc
Confidence 999999987654444444444433222221110 001122566789999889999999998764
No 217
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.89 E-value=1e-08 Score=71.53 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=52.2
Q ss_pred cceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 302 ANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 302 ~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
..+.+|+.+.|.|.+.+ .+...+.|++++..+... .....|.|.+++.+|+|.|+|.|.+..|..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 35789999999999854 566789999988765321 123479999999999999999999988855
No 218
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.87 E-value=1.8e-08 Score=70.62 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred eEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC-C----eEEEEEcccCCCCceEEEEEEEcCCeee--EEEEEE
Q psy12425 12 NTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD-D----YIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFTI 83 (591)
Q Consensus 12 ~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~l 83 (591)
.++|.|.+.| .|.+.++|+|+|+.+...........+ . ...|.|.....+|.|.|+|.|.|..-.. ..+++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 4789999987 688899999999988644221111111 1 2468888877888899999999875433 444444
Q ss_pred E
Q psy12425 84 N 84 (591)
Q Consensus 84 ~ 84 (591)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 3
No 219
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.86 E-value=8.9e-09 Score=72.50 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=57.2
Q ss_pred cceeecCCCeEEEEEee-eccCCCeEEEeeCCeEe--eeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425 396 DTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVI--ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~ 470 (591)
....+.+|..+.|.|.. .|.|.+.+.|++++..+ ..+.+.. .....+.|.+.+++..|.|.|.|.|.|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~--~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF--VSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE--EeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 34557889999999976 68899999999998754 2222222 23357899999999999999999999987654
No 220
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.85 E-value=3.9e-08 Score=72.94 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCceeeeecCCeEEEEEEeccC----CCceEEEE---------------ECCEEeec-C----CceeEEE--eCCeEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGD----QPMEVSLT---------------KNGRVVQS-D----DRFKFTV--LDDYIIIF 54 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~----p~~~v~W~---------------~~~~~~~~-~----~~~~~~~--~~~~~~l~ 54 (591)
+|..+.+..|+.+.|.|.+... +...|.|. ++|+.... . +|..+.. ..+..+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4778999999999999999653 34689993 34444321 1 2333321 12346899
Q ss_pred EcccCCCCceEEEEEEEcCCeee
Q psy12425 55 IKEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 55 i~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
|.+++.+|.|.|+|.+.|..+..
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCcC
Confidence 99999999999999999886533
No 221
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.85 E-value=2.8e-08 Score=74.43 Aligned_cols=76 Identities=20% Similarity=0.390 Sum_probs=52.9
Q ss_pred CCceeeeecCCeEEEEEEeccCC----CceEEEEEC----CE--Ee---e------cCCce--eEEE----eCCeEEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQ----PMEVSLTKN----GR--VV---Q------SDDRF--KFTV----LDDYIIIFI 55 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~----~~--~~---~------~~~~~--~~~~----~~~~~~l~i 55 (591)
+|+.+++.+|++++|.|.+...+ ...|.|++- +. .+ . ...++ ++.. ..+..+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 58899999999999999986533 346999751 21 11 0 11122 2221 123468999
Q ss_pred cccCCCCceEEEEEEEcCCee
Q psy12425 56 KEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 56 ~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
.+++.+|+|.|.|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987653
No 222
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.84 E-value=1.6e-08 Score=67.21 Aligned_cols=63 Identities=35% Similarity=0.578 Sum_probs=51.9
Q ss_pred CCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468 (591)
Q Consensus 402 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g 468 (591)
+|+.+.|.|.+.+.+.+.+.|++++..+. .. .........|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ES--NRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CC--CEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 37889999999899999999999988776 11 12223567899999999999999999999865
No 223
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.84 E-value=2e-08 Score=71.05 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=52.9
Q ss_pred ceeccccEEEEEEEcCCCCCeeEEecCCccC-C-------------CCCceEEEE---eCCeEEEEEcceecccceEEEE
Q psy12425 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREI-T-------------PSARHHIFA---EGDTYTLIINSVYGVDADEYVC 365 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~c 365 (591)
.+..|+.++|.|.+.+.+.+.+.|++++... . ...+..... .++.++|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999999999999998654221 1 111222222 3445789999999999999999
Q ss_pred EEEeCCcc
Q psy12425 366 RAVNKGGV 373 (591)
Q Consensus 366 ~a~n~~g~ 373 (591)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99887654
No 224
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.82 E-value=5e-08 Score=72.43 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred cCCeEEEEEEeccCC------CceEEEEECC-----E-Ee--ecC--------CceeEEE---eCCeEEEEEcccCCCCc
Q psy12425 9 EGDNTKVKIFYAGDQ------PMEVSLTKNG-----R-VV--QSD--------DRFKFTV---LDDYIIIFIKEIRKEDA 63 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~--------~~~~~~~---~~~~~~l~i~~~~~~d~ 63 (591)
.|++|+|.|.+...+ .+.|.|+|.. . .+ ..+ .+.++.. .....+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 499999999997643 5699999862 1 11 011 1112221 23457999999999999
Q ss_pred eEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 64 GDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 64 g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877778888888864
No 225
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.82 E-value=1.9e-08 Score=75.21 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=54.4
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCE--E---e----------e---cCCceeEEEeC-CeEEEEEcccCCCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR--V---V----------Q---SDDRFKFTVLD-DYIIIFIKEIRKED 62 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~--~---~----------~---~~~~~~~~~~~-~~~~l~i~~~~~~d 62 (591)
|..+.+.+|++++|.|.+.+ +...+.|||... . | . ...++...... ...+|.|.+++++|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 67899999999999999987 778899999531 1 1 0 01344433322 45789999999999
Q ss_pred ceEEEEEEEcCC
Q psy12425 63 AGDYTVNLSNSS 74 (591)
Q Consensus 63 ~g~Y~c~~~n~~ 74 (591)
+|.|.|.+.+..
T Consensus 84 sg~Y~Ca~~~~~ 95 (110)
T cd05899 84 SAVYLCASSLGG 95 (110)
T ss_pred CEEEEEEeeCCC
Confidence 999999998653
No 226
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.82 E-value=2.9e-08 Score=73.63 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=53.9
Q ss_pred CceeeeecCCeEEEEEEeccCC-CceEEEEECC--E---Eee---------cCCceeEEEeCCeEEEEEcccCCCCceEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNG--R---VVQ---------SDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 66 (591)
|..+.+.+|++|+|.|.+.+.. ...+.|+|.. + .|. ...++.....+....|.|.+++++|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 7788999999999999997654 6789999842 1 111 01344444444557899999999999999
Q ss_pred EEEEEcC
Q psy12425 67 TVNLSNS 73 (591)
Q Consensus 67 ~c~~~n~ 73 (591)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9998754
No 227
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.82 E-value=1.5e-08 Score=71.19 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=56.4
Q ss_pred cccceeccccEEEEEE-EcCCCCCeeEEecCCcc-CCCCCceEEEEeCCeEEEEEcceecccce-EEEEEEEeCCc
Q psy12425 300 RNANAIQNHNAQFQCT-ITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGG 372 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~a~n~~g 372 (591)
+.+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +....++.+..+| .|.|.++...|.| .|.|.|.|...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEcccc
Confidence 5567899999999997 69999999999987654 3334455554455 7999999999999 79999998753
No 228
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.81 E-value=6e-08 Score=71.34 Aligned_cols=79 Identities=14% Similarity=0.311 Sum_probs=55.7
Q ss_pred cCCeEEEEEEeccCC------------CceEEEEEC--CE---Ee---------ecC--CceeEEE---eCCeEEEEEcc
Q psy12425 9 EGDNTKVKIFYAGDQ------------PMEVSLTKN--GR---VV---------QSD--DRFKFTV---LDDYIIIFIKE 57 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p------------~~~v~W~~~--~~---~~---------~~~--~~~~~~~---~~~~~~l~i~~ 57 (591)
.|++|+|.|.+.... .+.|.|+|- |+ .+ ..+ +|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 499999999997532 468999984 21 11 111 2333332 23557999999
Q ss_pred cCCCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 58 IRKEDAGDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 58 ~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
++.+|+|.|+|.+.+.....+..+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999997766667777777753
No 229
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.81 E-value=3e-08 Score=69.70 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCeEEEEEeeeccCC--CeEEEeeCCeEeeec---cc---eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425 403 GENVVVKIPFTGYPK--PKITWYRDNEVIESG---GH---FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474 (591)
Q Consensus 403 g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~---~~---~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~ 474 (591)
|+.+.|.|.+.+.+. ..+.|..++...... .. .........+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987664 478998877543211 11 0011123467899999999999999999999999888888
Q ss_pred EEEec
Q psy12425 475 KIQIS 479 (591)
Q Consensus 475 ~~~v~ 479 (591)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 87764
No 230
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.81 E-value=5.4e-08 Score=70.55 Aligned_cols=80 Identities=14% Similarity=0.360 Sum_probs=56.9
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEE-eCCeEEEEEcceecccceEEEEEEEeC
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
+++.+.+|+.+.|.|.+.+.+.+.+.|++.+... ....++.+.. .+...+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 3566889999999999998888999998632211 1224554432 234568999999999999999999876
Q ss_pred CcceeeeeEE
Q psy12425 371 GGVKSTKAEL 380 (591)
Q Consensus 371 ~g~~~~~~~l 380 (591)
.. ....+.|
T Consensus 85 ~~-~~~~~~~ 93 (95)
T cd05717 85 PV-QTAKATV 93 (95)
T ss_pred CC-ceEEEEE
Confidence 43 3444444
No 231
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.79 E-value=5.9e-08 Score=68.18 Aligned_cols=70 Identities=29% Similarity=0.589 Sum_probs=53.6
Q ss_pred cceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc-eeeeeEE
Q psy12425 302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV-KSTKAEL 380 (591)
Q Consensus 302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~~~~~~l 380 (591)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .. .+.+..+..+|.|.|+|.+.+..+. .+..+.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QN--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SS--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------ee--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 55789999999999999999999999987554421 11 1777899999999999999996653 2444444
Q ss_pred E
Q psy12425 381 I 381 (591)
Q Consensus 381 ~ 381 (591)
.
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 4
No 232
>smart00409 IG Immunoglobulin.
Probab=98.78 E-value=1.5e-07 Score=67.23 Aligned_cols=82 Identities=26% Similarity=0.554 Sum_probs=66.3
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~ 379 (591)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.++...|+|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34567899999999999988899999998 77776556666666655678999999999999999999988777655555
Q ss_pred EEE
Q psy12425 380 LII 382 (591)
Q Consensus 380 l~v 382 (591)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 544
No 233
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.78 E-value=1.5e-07 Score=67.23 Aligned_cols=82 Identities=26% Similarity=0.554 Sum_probs=66.3
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~ 379 (591)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.++...|+|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34567899999999999988899999998 77776556666666655678999999999999999999988777655555
Q ss_pred EEE
Q psy12425 380 LII 382 (591)
Q Consensus 380 l~v 382 (591)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 544
No 234
>KOG4258|consensus
Probab=98.78 E-value=3.1e-07 Score=87.89 Aligned_cols=136 Identities=14% Similarity=0.234 Sum_probs=92.1
Q ss_pred EEecCceEEEEecCCCCCCCcceeeEEEEEEec--------------CCCceEEEEee--------cCcceEEEcCCcCC
Q psy12425 99 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--------------SMPHWICISTT--------CHDTTFIVQGLTEG 156 (591)
Q Consensus 99 ~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~--------------~~~~~~~~~~~--------~~~~~~~i~~l~~~ 156 (591)
.....+++.++|..-...+.....+|.+.+.+. +...|...... ....-+.+.+|.|.
T Consensus 497 ~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~ 576 (1025)
T KOG4258|consen 497 TVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPW 576 (1025)
T ss_pred EEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCcc
Confidence 445678899999765544455667788877654 23345443321 12235778999999
Q ss_pred cEEEEEEEEEccCCC-CCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425 157 QEYLFHVMAVNENGM-GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA 235 (591)
Q Consensus 157 ~~y~~~~~a~n~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~ 235 (591)
+.|-|-|.+....-. ......+.....++....|.+|...-....+.+.+.|+|.+|..+++ .++.|.+.+.......
T Consensus 577 TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~~~~~ 655 (1025)
T KOG4258|consen 577 TQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQAEDG 655 (1025)
T ss_pred ceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEeccCCc
Confidence 999999988732211 11114445666677778899998887777777889999999987765 6888888777655443
No 235
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.77 E-value=8.4e-08 Score=70.41 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=52.9
Q ss_pred CCeEEEEEEeccC---CCceEEEEECCE--Ee---------e------cCCceeEEE---eCCeEEEEEcccCCCCceEE
Q psy12425 10 GDNTKVKIFYAGD---QPMEVSLTKNGR--VV---------Q------SDDRFKFTV---LDDYIIIFIKEIRKEDAGDY 66 (591)
Q Consensus 10 G~~~~l~C~~~~~---p~~~v~W~~~~~--~~---------~------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y 66 (591)
|++|+|.|.+... ....+.|+|... .+ . ...|..+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 8899999998632 234688988541 11 1 012333321 13447899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy12425 67 TVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 67 ~c~~~n~~g~~~~~~~l~v 85 (591)
.|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777777776
No 236
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.77 E-value=3.9e-08 Score=65.28 Aligned_cols=61 Identities=20% Similarity=0.463 Sum_probs=48.4
Q ss_pred cccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCCeE--EEEEcceecccceEEEEEE
Q psy12425 307 NHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRA 367 (591)
Q Consensus 307 g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~c~a 367 (591)
|+.+.|.|.+ .+.+...+.|.+++..............+... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 88888999999998877655444444333322 3999999999999999986
No 237
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.77 E-value=2.3e-08 Score=71.45 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=51.5
Q ss_pred eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
..|.+|++|+|.|... .+...+.|+|+|...... .....+....|.|.+++++|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4688999999999886 778899999998754321 1112344568999999999999999999886
No 238
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.76 E-value=3.9e-08 Score=73.24 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=53.9
Q ss_pred eeeecCCeEEEEEEeccC-CCceEEEEECCE-----Ee------------ecCCceeEEEeC--CeEEEEEcccCCCCce
Q psy12425 5 LYIPEGDNTKVKIFYAGD-QPMEVSLTKNGR-----VV------------QSDDRFKFTVLD--DYIIIFIKEIRKEDAG 64 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~-----~~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g 64 (591)
+.+.+|++++|.|.+.+. +...+.|+|... .+ ....|+.+.... ...+|+|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 578999999999999876 678999998432 11 112344444433 5679999999999999
Q ss_pred EEEEEEEcCCe
Q psy12425 65 DYTVNLSNSSG 75 (591)
Q Consensus 65 ~Y~c~~~n~~g 75 (591)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987664
No 239
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=1.2e-07 Score=70.41 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=56.8
Q ss_pred cCCeEEEEEEeccCC------CceEEEEECCE------E--eec----------CCceeEEE-eCCeEEEEEcccCCCCc
Q psy12425 9 EGDNTKVKIFYAGDQ------PMEVSLTKNGR------V--VQS----------DDRFKFTV-LDDYIIIFIKEIRKEDA 63 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p------~~~v~W~~~~~------~--~~~----------~~~~~~~~-~~~~~~l~i~~~~~~d~ 63 (591)
.|++|+|.|.+...| ...|.|+|... . +.. ..|+.+.. .....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 599999999987653 45799998531 1 110 12333221 12346899999999999
Q ss_pred eEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 64 GDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 64 g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888888763
No 240
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.75 E-value=5.9e-08 Score=70.15 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=56.4
Q ss_pred ecCCeEEEEEEecc-CCCceEEEEECCEEeec-------------CCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 8 PEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQS-------------DDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 8 ~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~-------------~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
..|++|+|.|.... .....+.|+|....+.. ..+ .++....+..+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999999865 55668999986532210 111 234444556899999999999999999999
Q ss_pred cCCeee-EEEEEEEE
Q psy12425 72 NSSGSV-SGTFTINI 85 (591)
Q Consensus 72 n~~g~~-~~~~~l~v 85 (591)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887665 55566665
No 241
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.74 E-value=8.5e-08 Score=69.93 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=52.0
Q ss_pred eeeecCCeEEEEEEeccC--CCceEEEEECCE--E---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEEEE
Q psy12425 5 LYIPEGDNTKVKIFYAGD--QPMEVSLTKNGR--V---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV 68 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~--p~~~v~W~~~~~--~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c 68 (591)
+.|.+|++|+|.|.+.+. ....+.|||... . | ....++..........|.|.+++++|+|.|.|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 468999999999999765 556799998431 1 1 01235555555567889999999999999999
Q ss_pred EEEcC
Q psy12425 69 NLSNS 73 (591)
Q Consensus 69 ~~~n~ 73 (591)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98753
No 242
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.74 E-value=5.8e-08 Score=68.94 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=55.2
Q ss_pred eeecCCCeEEEEEeeeccCCCeEEEeeCCe--Eee----eccceEEEecCCeeEEEEeccCCCcceeEEEEEE-cCCCcc
Q psy12425 398 AYFDKGENVVVKIPFTGYPKPKITWYRDNE--VIE----SGGHFHVETSERHAILTIRDASNVDTAPYRVVAE-NDLGMD 470 (591)
Q Consensus 398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~-n~~g~~ 470 (591)
....+|+.+.|.|.. +.|.|.+.|++.+. ... ...++.. ....|.|.+++++|+|.|.|.|. |..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 456789999999997 58899999998432 111 1223322 23569999999999999999998 566655
Q ss_pred ceEEEEEec
Q psy12425 471 SAIVKIQIS 479 (591)
Q Consensus 471 ~~~~~~~v~ 479 (591)
...+.|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 566666654
No 243
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.74 E-value=1.9e-07 Score=66.06 Aligned_cols=70 Identities=14% Similarity=0.338 Sum_probs=55.7
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEE-eCCeEEEEEcceecccceEEEEEEEe
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVN 369 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~n 369 (591)
+++.+.+|+++.|+|.+.+.....+.|++.+..+ ....++.+.. ++..++|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4567889999999999998877778887655332 3455676665 56788999999999999999999865
No 244
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.72 E-value=9.4e-08 Score=72.10 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=52.1
Q ss_pred CCceeeeecCCeEEEEEEeccCC----CceEEEEECC------EEee----------cCCce--eEEE----eCCeEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQ----PMEVSLTKNG------RVVQ----------SDDRF--KFTV----LDDYIIIF 54 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~~------~~~~----------~~~~~--~~~~----~~~~~~l~ 54 (591)
.|..+.+.+|++++|.|.+.... ...+.|++.. ..+. ...++ ++.. ..+..+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 48899999999999999986532 2569998632 1110 11121 1222 12347899
Q ss_pred EcccCCCCceEEEEEEEcCCe
Q psy12425 55 IKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 55 i~~~~~~d~g~Y~c~~~n~~g 75 (591)
|.+++.+|+|.|.|.+.|...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999997754
No 245
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.72 E-value=2e-07 Score=67.76 Aligned_cols=86 Identities=44% Similarity=0.691 Sum_probs=68.7
Q ss_pred CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEecee--eeeEEEEcCcccCceEEEEEEEEcC
Q psy12425 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRVYAENV 559 (591)
Q Consensus 482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~Y~~~v~A~n~ 559 (591)
|.+|.++.+.....+++.|+|+++.... ..+..|.+.+.......|...... ....+.+.+|.|++.|.|+|+|.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 4567777777777899999999875433 357799999987765677766543 6789999999999999999999999
Q ss_pred CcCCCCCCC
Q psy12425 560 YGRSDPSTT 568 (591)
Q Consensus 560 ~G~~~~s~~ 568 (591)
.|.|.++..
T Consensus 80 ~~~~~~s~~ 88 (93)
T cd00063 80 GGESPPSES 88 (93)
T ss_pred CccCCCccc
Confidence 888877663
No 246
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.71 E-value=1.7e-07 Score=69.41 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=56.2
Q ss_pred cCCeEEEEEEeccCC----------CceEEEEEC--CEEe------------ecC--CceeEE---EeCCeEEEEEcccC
Q psy12425 9 EGDNTKVKIFYAGDQ----------PMEVSLTKN--GRVV------------QSD--DRFKFT---VLDDYIIIFIKEIR 59 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p----------~~~v~W~~~--~~~~------------~~~--~~~~~~---~~~~~~~l~i~~~~ 59 (591)
.|++|+|.|.+...+ ...|.|+|. ++.. ... +|+.+. ......+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997643 367999985 2110 111 232232 12345789999999
Q ss_pred CCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 60 KEDAGDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777778888888864
No 247
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.71 E-value=1.7e-07 Score=68.64 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=53.5
Q ss_pred CeEEEEEEeccCC---CceEEEEECCEE---------------eecCCceeEEEeC---CeEEEEEcccCCCCceEEEEE
Q psy12425 11 DNTKVKIFYAGDQ---PMEVSLTKNGRV---------------VQSDDRFKFTVLD---DYIIIFIKEIRKEDAGDYTVN 69 (591)
Q Consensus 11 ~~~~l~C~~~~~p---~~~v~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~ 69 (591)
++|+|.|.+...+ ...|.|+|.... +....+.++...+ ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997644 457999995421 1111123333322 357999999999999999999
Q ss_pred EEc-CCeeeEEEEEEEEe
Q psy12425 70 LSN-SSGSVSGTFTINIT 86 (591)
Q Consensus 70 ~~n-~~g~~~~~~~l~v~ 86 (591)
+.+ ..|.....+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 874 66777888888773
No 248
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.71 E-value=1e-07 Score=69.17 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=55.1
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCE-----Ee---ecC---------CceeEEEeCCeEEEEEcccCCCCce
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-----VV---QSD---------DRFKFTVLDDYIIIFIKEIRKEDAG 64 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~-----~~---~~~---------~~~~~~~~~~~~~l~i~~~~~~d~g 64 (591)
|.+..+.+|+++.|.|.....+-..+.|+|+.. .| ... .+.+..... +.+|.|.+++.+|+|
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G 83 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTG 83 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCE
Confidence 345668899999999987555556999999631 11 000 011112222 238999999999999
Q ss_pred EEEEEEEcCC-eeeEEEEEEE
Q psy12425 65 DYTVNLSNSS-GSVSGTFTIN 84 (591)
Q Consensus 65 ~Y~c~~~n~~-g~~~~~~~l~ 84 (591)
.|.|.+.+.. ......+.+.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 9999999887 3445555554
No 249
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.71 E-value=8.5e-08 Score=72.64 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=55.2
Q ss_pred CceeeeecCCeEEEEEEecc--CCCceEEEEEC--CEE----e--e-----------cCCceeEEEeC--CeEEEEEccc
Q psy12425 2 PNALYIPEGDNTKVKIFYAG--DQPMEVSLTKN--GRV----V--Q-----------SDDRFKFTVLD--DYIIIFIKEI 58 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--~~~----~--~-----------~~~~~~~~~~~--~~~~l~i~~~ 58 (591)
|..+.+.+|++|+|.|.+.+ .+.+.+.|+|. |.. + . ...|+.+.... ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 67889999999999999977 67889999994 211 0 0 12455555444 5689999999
Q ss_pred CCCCceEEEEEEEc
Q psy12425 59 RKEDAGDYTVNLSN 72 (591)
Q Consensus 59 ~~~d~g~Y~c~~~n 72 (591)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 250
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.69 E-value=2.8e-07 Score=70.12 Aligned_cols=84 Identities=19% Similarity=0.376 Sum_probs=59.6
Q ss_pred CceeeeecCCeEEEEEEec-cCCCceEEEEECCE-----Eee--------------cCCceeEEEe--CCeEEEEEcccC
Q psy12425 2 PNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGR-----VVQ--------------SDDRFKFTVL--DDYIIIFIKEIR 59 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~~~ 59 (591)
|..+.+.+|+++.|.|... ......+.|++... .+. ...+..+... ....+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 6789999999999999998 55677999998321 111 0123333333 235799999999
Q ss_pred CCCceEEEEEEEcCC-eeeEEEEEEEE
Q psy12425 60 KEDAGDYTVNLSNSS-GSVSGTFTINI 85 (591)
Q Consensus 60 ~~d~g~Y~c~~~n~~-g~~~~~~~l~v 85 (591)
.+|+|.|.|.+.... ......+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999998773 23344455554
No 251
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.66 E-value=1.5e-07 Score=68.01 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCeEEEEEEeccCCCceEEEEECCEEe-----e-----------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425 10 GDNTKVKIFYAGDQPMEVSLTKNGRVV-----Q-----------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 10 G~~~~l~C~~~~~p~~~v~W~~~~~~~-----~-----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
|++|+|.|.+...+...+.|+|+.... . ...+.++....+ .+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence 899999999987777799999976321 1 011112333333 68999999999999999999887
Q ss_pred Ceee-EEEEEEE
Q psy12425 74 SGSV-SGTFTIN 84 (591)
Q Consensus 74 ~g~~-~~~~~l~ 84 (591)
.|.. ...+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 6443 3334443
No 252
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.64 E-value=2.6e-07 Score=65.76 Aligned_cols=77 Identities=36% Similarity=0.719 Sum_probs=65.2
Q ss_pred cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc-eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCC
Q psy12425 96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173 (591)
Q Consensus 96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~ 173 (591)
+.+......++.|+|.+|. .++..+..|.|.+....... +...........+.+.+|.+++.|.|+++|.+..|.+.
T Consensus 6 l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~ 83 (85)
T PF00041_consen 6 LSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDGEGP 83 (85)
T ss_dssp EEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTEEEE
T ss_pred eEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCcCcC
Confidence 6777789999999999987 66778999999999887766 66665566666999999999999999999999888654
No 253
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.64 E-value=1.8e-07 Score=66.13 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=54.7
Q ss_pred eecCCCeEEEEEee-e----ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceE
Q psy12425 399 YFDKGENVVVKIPF-T----GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI 473 (591)
Q Consensus 399 ~~~~g~~~~l~c~~-~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~ 473 (591)
.+..|....|.|.- . ..+.+.+.|++++.++......... ..+...|.|.++..+|+|.|+|.|.+..|.....
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 34668889999973 2 3467799999999988644322222 1234579999999999999999999998765433
No 254
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.61 E-value=2.8e-07 Score=63.44 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=56.6
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
+...+..|..+.|.|...+. .+.+.|++++..+..+.++.....| |.|..+.+.|+|.|.|.+. ..|..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCe
Confidence 35668899999999999876 5599999999988776677666666 8899999999999999986 33444
No 255
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.60 E-value=4.9e-07 Score=70.63 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=63.0
Q ss_pred eeeeecCCeEEEEEEec-cCCCceEEEEECCEEe----------ecC--Ccee-EEEeCCeEEEEEcccCCCCceEEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVV----------QSD--DRFK-FTVLDDYIIIFIKEIRKEDAGDYTVN 69 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~----------~~~--~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~ 69 (591)
.++|.+|++|.|.|... +...+.|.|+|..+.+ .++ +|.. +........|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 57899999999999984 6678899999964322 221 3444 23334457999999999999999999
Q ss_pred EE-cCCe-eeEEEEEEEEecC
Q psy12425 70 LS-NSSG-SVSGTFTINITGL 88 (591)
Q Consensus 70 ~~-n~~g-~~~~~~~l~v~~~ 88 (591)
.. -..| ..+....|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 85 3445 6677788888764
No 256
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.59 E-value=2.4e-07 Score=62.71 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=49.2
Q ss_pred EEEEEeee-ccCCCeEEEeeCCeEeeeccceEEEec---CCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425 406 VVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETS---ERHAILTIRDASNVDTAPYRVVAENDLGMD 470 (591)
Q Consensus 406 ~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~ 470 (591)
+.|+|... |.|.+++.|++++.++..... ..... ...+.|.+.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999985 789999999999999864321 11111 124578999999999999999999998865
No 257
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.59 E-value=6.4e-07 Score=65.62 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=55.1
Q ss_pred cCCeEEEEEEeccCC-------CceEEEEECC-----EE------------eecCCceeEEEeC-----CeEEEEEcccC
Q psy12425 9 EGDNTKVKIFYAGDQ-------PMEVSLTKNG-----RV------------VQSDDRFKFTVLD-----DYIIIFIKEIR 59 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p-------~~~v~W~~~~-----~~------------~~~~~~~~~~~~~-----~~~~l~i~~~~ 59 (591)
.|++|.|.|.+.-.| .+.|.|.|.. +. +..+-+.++.... ...+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 388999999976322 4789998741 11 1112222333322 35799999999
Q ss_pred CCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 60 KEDAGDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
.+|+|.|+|.+.......+..+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999998776677788888763
No 258
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.57 E-value=6.8e-07 Score=62.64 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=47.8
Q ss_pred EEEEEeeec-cCCCeEEEeeCCeEeeeccceEEEe-cC----CeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425 406 VVVKIPFTG-YPKPKITWYRDNEVIESGGHFHVET-SE----RHAILTIRDASNVDTAPYRVVAENDLGMDSA 472 (591)
Q Consensus 406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~ 472 (591)
+.|.|.+.| .|.+.+.|+++|..+.......... .+ ..+.|.+.....++.+.|+|.|.|.......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence 689999987 6889999999998875432211111 11 1356778877788899999999998755533
No 259
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.57 E-value=9.8e-07 Score=66.82 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCceeeeecCCeEEEEEEeccCC------CceEEEEECCE-----E-ee---------c--CCceeEE--EeCCeEEEEE
Q psy12425 1 MPNALYIPEGDNTKVKIFYAGDQ------PMEVSLTKNGR-----V-VQ---------S--DDRFKFT--VLDDYIIIFI 55 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~~~p------~~~v~W~~~~~-----~-~~---------~--~~~~~~~--~~~~~~~l~i 55 (591)
.|..+.+.+|++|+|.|.+.... ...+.|+|... . +. . .+|+.+. .....++|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 48899999999999999885321 35689998531 1 10 0 1233332 2344589999
Q ss_pred cccCCCCceEEEEEEEcC
Q psy12425 56 KEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 56 ~~~~~~d~g~Y~c~~~n~ 73 (591)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 260
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.57 E-value=0.003 Score=70.78 Aligned_cols=274 Identities=14% Similarity=0.136 Sum_probs=146.6
Q ss_pred cEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc
Q psy12425 259 QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR 338 (591)
Q Consensus 259 ~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~ 338 (591)
.|.+++.|.|..+... .+..+.+.++ .-.+........+..|+.++|++.....+...+.|..++.....
T Consensus 1841 ~ytV~L~AsN~vs~~~---~s~~~~VQe~----I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~--- 1910 (2740)
T TIGR00864 1841 TFAIRLNASNAVSGKS---ASREFFAEEP----IFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV--- 1910 (2740)
T ss_pred EEEEEEEEEcccCcce---eeeeEEEEEe----cceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCcee---
Confidence 4555677889886543 4455555521 11233333444577899999999988877889999775432110
Q ss_pred eEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCc-ccCCCCcccceeecCCCeEEEEEeeeccCC
Q psy12425 339 HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKIPFTGYPK 417 (591)
Q Consensus 339 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~ 417 (591)
...+.... ..-..-..+.....|.|..+.......+.|..+-. ..+.... ...+..|+...|...+....+
T Consensus 1911 ---~t~~~t~~---HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c--~~~~~~g~~~tF~A~v~~g~~ 1982 (2740)
T TIGR00864 1911 ---LQPGPRFS---HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCC--AAGIATGEEKNFTANVQRGKP 1982 (2740)
T ss_pred ---ecCCCeEE---eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCc--ccceecCceEEEEEEEecCCc
Confidence 01111111 12223344566777999988887777777765421 1111110 112467899999999877777
Q ss_pred CeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeee-----e
Q psy12425 418 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE-----D 492 (591)
Q Consensus 418 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~-----~ 492 (591)
..+.|+..-..+..+.. +...+..-.+... ..-.+..++.|.|..|..+....+.|+.+... ..+. .
T Consensus 1983 V~f~W~f~~~~~~g~~~--~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~---~~L~~~p~~~ 2054 (2740)
T TIGR00864 1983 VAFAWTFDLHHLHGDSL--VIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQLEAQDALMD---AALQAGPQDC 2054 (2740)
T ss_pred eEEEEEeeecccCCCcc--eeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEEEEEeheee---EEEeecCcce
Confidence 78999865333322222 1112223333332 22345567778999999887777777765421 1111 0
Q ss_pred ecCCeeEEE--eeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCc
Q psy12425 493 IGHDSLALV--WRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569 (591)
Q Consensus 493 ~~~~~v~l~--W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~ 569 (591)
.....+.+. +.+ + +.-..|.+.+-+..... ..+.....+ .-.++|+ |.++|.|.|..........+
T Consensus 2055 ~~n~~v~f~~~~~~----~-~~~v~~~WDFGDGt~~~---~T~~~~~sH--tY~r~G~-Y~V~V~a~N~VS~~~a~~~i 2122 (2740)
T TIGR00864 2055 FTNKMAQFEAATSP----K-PNFMACHWDFGDGSAGQ---DTDEPRAEH--EYLHPGD-YRVQVNASNLVSFFSAHAEI 2122 (2740)
T ss_pred ecCceEEEEEEEcc----C-CCcEEEEEEecCCCCcc---ccCCceeEE--EecCCcc-EEEEEEEEcceeeeeeEEEE
Confidence 111222222 321 1 12234555544322111 111111122 2256664 99999999999865444433
No 261
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.57 E-value=7.7e-07 Score=64.79 Aligned_cols=75 Identities=12% Similarity=0.287 Sum_probs=51.9
Q ss_pred CeEEEEEEeccCC---CceEEEEECCE-----Ee---e--------cC--CceeEEE--eCCeEEEEEcccCCCCceEEE
Q psy12425 11 DNTKVKIFYAGDQ---PMEVSLTKNGR-----VV---Q--------SD--DRFKFTV--LDDYIIIFIKEIRKEDAGDYT 67 (591)
Q Consensus 11 ~~~~l~C~~~~~p---~~~v~W~~~~~-----~~---~--------~~--~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~ 67 (591)
.+|+|.|...... ...|.|+|... .+ . .. +|.++.. .....+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999996543 44899998321 11 0 01 3444432 223568999999999999999
Q ss_pred EEEEc-CCeeeEEEEEEEE
Q psy12425 68 VNLSN-SSGSVSGTFTINI 85 (591)
Q Consensus 68 c~~~n-~~g~~~~~~~l~v 85 (591)
|.+.+ ..|..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99987 6676677777776
No 262
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.54 E-value=1.3e-06 Score=59.40 Aligned_cols=74 Identities=5% Similarity=0.034 Sum_probs=49.5
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC---CeEEEEEcccCCCCceEEEEEEEcCCee-eEEEEEEEEe
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD---DYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTINIT 86 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~~~~~l~v~ 86 (591)
+.|.|.+.| .|++.|.|+|+++++............ ..++|.|..-..+|...|+|+|.|..-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999977 899999999999998654221111111 1256777655566666899999886422 3444556554
No 263
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.52 E-value=8.1e-07 Score=62.80 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=56.1
Q ss_pred ccceeccccEEEEEEEc-----------CCCCCeeEEecCCccCCCCCc-----eEEEEeCCeEEEEEcceecccceEEE
Q psy12425 301 NANAIQNHNAQFQCTIT-----------GCPKPTISWLKGSREITPSAR-----HHIFAEGDTYTLIINSVYGVDADEYV 364 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~ 364 (591)
...+.+|+.+.|.|... ......+.|+|++........ ..+...+. .|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 35578999999999961 122347999998755443331 23333343 7999999999999999
Q ss_pred EEEEeCCcceeeeeEEE
Q psy12425 365 CRAVNKGGVKSTKAELI 381 (591)
Q Consensus 365 c~a~n~~g~~~~~~~l~ 381 (591)
|.+.|.......++.|.
T Consensus 87 C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 87 CVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEECCCCcceEEEEEEE
Confidence 99999876666555554
No 264
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.51 E-value=2.1e-06 Score=62.86 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCeEEEEEEeccCC-----------CceEEEEEC-----CE-----Ee----------ecC--CceeEEEe---CCeEEE
Q psy12425 10 GDNTKVKIFYAGDQ-----------PMEVSLTKN-----GR-----VV----------QSD--DRFKFTVL---DDYIII 53 (591)
Q Consensus 10 G~~~~l~C~~~~~p-----------~~~v~W~~~-----~~-----~~----------~~~--~~~~~~~~---~~~~~l 53 (591)
|++++|.|.+.-.| .+.|.|++- |+ .+ ... +|..+... .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997433 348999873 11 11 111 23333211 234799
Q ss_pred EEcccCCCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG 87 (591)
Q Consensus 54 ~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~ 87 (591)
.|.+++.+|+|.|+|.+.+.....+..+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999888888888888763
No 265
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.51 E-value=6.2e-07 Score=67.83 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=53.7
Q ss_pred CceeeeecCCeEEEEEEeccC-CCceEEEEECC--EE---e---------ecCCceeEEE--eCCeEEEEEcccCCCCce
Q psy12425 2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNG--RV---V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDAG 64 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g 64 (591)
|..+.+.+|++|+|.|.+... ....+.|+|.. .. + ...+|+.+.. ..+..+|.|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 678899999999999998753 56789999832 11 1 1124555542 345689999999999999
Q ss_pred EEEEEEEcC
Q psy12425 65 DYTVNLSNS 73 (591)
Q Consensus 65 ~Y~c~~~n~ 73 (591)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999999753
No 266
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.50 E-value=3.8e-07 Score=65.39 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=48.4
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
....|.+|++|+|.|.... +...+.|+|+|...................|.|..++++|+|.|+|...
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3456899999999998864 5678999998865321100000112234589999999999999999975
No 267
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.48 E-value=3e-07 Score=63.55 Aligned_cols=73 Identities=27% Similarity=0.472 Sum_probs=47.9
Q ss_pred CeEEeeccccceeccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425 293 PEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369 (591)
Q Consensus 293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n 369 (591)
|.+...........+. +.|.|.+.+.+ .+.+.|+...... ............+|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555554444333344 99999999987 8899999110000 011111222344899999999999999999987
No 268
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.47 E-value=3.1e-07 Score=63.51 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=42.5
Q ss_pred cCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425 9 EGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN 72 (591)
Q Consensus 9 ~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n 72 (591)
.+..+.|.|.+.+.+ .+.++|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus 14 ~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 14 SGGSVTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TTEEEEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eceeEEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 333399999999876 8899999 1111111 11112223446899999999999999999986
No 269
>KOG0613|consensus
Probab=98.45 E-value=1.9e-05 Score=80.30 Aligned_cols=263 Identities=18% Similarity=0.133 Sum_probs=161.6
Q ss_pred eEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425 197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276 (591)
Q Consensus 197 ~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s 276 (591)
.........+-..|..+..+++.....|.++.+..+...|.............. ... |...+++.-..|.....
T Consensus 147 ~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~--~a~----~e~~v~~v~s~gqp~~~ 220 (1205)
T KOG0613|consen 147 ESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDT--DAH----YESRVRAVVSAGQPEPL 220 (1205)
T ss_pred cceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCccee--ccc----cceeEEEEEecCCCccc
Confidence 334445566777898888888888999999999888877765544332222222 222 33333333333443321
Q ss_pred CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee
Q psy12425 277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY 356 (591)
Q Consensus 277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 356 (591)
.. .... ...+.+...+.......+....|.|.+.+.+.+.+.|+.+....... .-+..+..+.+-.
T Consensus 221 ~~-~~~~------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~ 286 (1205)
T KOG0613|consen 221 ER-WEIL------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDG 286 (1205)
T ss_pred hh-hhhc------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccC
Confidence 11 1111 11222223334445667888899999988888888887654332221 1122256666777
Q ss_pred cccceEEEEEEEeCCcceeeeeEEEEec----------------CCcccCCCCcccceeecCCCeEEEEEeeeccCCCe-
Q psy12425 357 GVDADEYVCRAVNKGGVKSTKAELIIMT----------------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK- 419 (591)
Q Consensus 357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~- 419 (591)
+...+.|+|...+..+.....+...+.. +|................+..+.+.|...+.+.|.
T Consensus 287 ~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~ 366 (1205)
T KOG0613|consen 287 PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE 366 (1205)
T ss_pred CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch
Confidence 7777888888887777665544433321 11111111112233456778899999999998886
Q ss_pred EEEeeCCeEeeecc--ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425 420 ITWYRDNEVIESGG--HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479 (591)
Q Consensus 420 v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~ 479 (591)
+.|++++....... ...+........+.+.++.+.+.+.|.|.|.|..|.........+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 367 AQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred heeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence 99999887665544 3334445567889999999999999999999999987544444443
No 270
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.45 E-value=2.7e-06 Score=61.07 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=51.4
Q ss_pred CeEEEEEEecc-CCC---ceEEEEECC----EEe-----------ecC--CceeEEE-eCCeEEEEEcccCCCCceEEEE
Q psy12425 11 DNTKVKIFYAG-DQP---MEVSLTKNG----RVV-----------QSD--DRFKFTV-LDDYIIIFIKEIRKEDAGDYTV 68 (591)
Q Consensus 11 ~~~~l~C~~~~-~p~---~~v~W~~~~----~~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c 68 (591)
..|+|.|.+.. .|. .+|.|.|-. ..+ ... +|..+.. .-...+|.|.+++.+|+|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 36899999974 222 269998841 111 111 2333221 1123689999999999999999
Q ss_pred EEEc-CCeeeEEEEEEEEe
Q psy12425 69 NLSN-SSGSVSGTFTINIT 86 (591)
Q Consensus 69 ~~~n-~~g~~~~~~~l~v~ 86 (591)
.+.+ ..|..+..+.|.|.
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9998 67877888888873
No 271
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=1.8e-06 Score=64.72 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=54.5
Q ss_pred cccceeccccEEEEEEEcCCCCCeeEEecCCcc--C------------CCCCceEEEEe--CCeEEEEEcceecccceEE
Q psy12425 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--I------------TPSARHHIFAE--GDTYTLIINSVYGVDADEY 363 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--~------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y 363 (591)
..+.+.+|+++.|.|.+.+.+...+.|++.... . ....++.+... ...++|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 456688999999999999878889999874321 0 12234444432 3678999999999999999
Q ss_pred EEEEEeCC
Q psy12425 364 VCRAVNKG 371 (591)
Q Consensus 364 ~c~a~n~~ 371 (591)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998754
No 272
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.43 E-value=3.1e-06 Score=58.91 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=44.5
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCe------EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDY------IIIFIKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~c~~~n~~g 75 (591)
+.|.|.+.| .|++.|+|++||+.+..... .+...++. ..|.|.....+|...|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999988 69899999999998865432 22222221 3466655566677899999988753
No 273
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.42 E-value=1.5e-06 Score=62.08 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
+|.+...+. ..+..|++|+|+|... .+...+.|+++|....... ....+....+.|.+++++|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 355555443 4578999999999886 5677899999887543211 112233457999999999999999999886
No 274
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.42 E-value=2.8e-06 Score=61.64 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=51.4
Q ss_pred CCeEEEEEEeccCCC-ceEEEEECCE----Eee-----c--------CCceeEE-EeCCeEEEEEcccCCCCceEEEEEE
Q psy12425 10 GDNTKVKIFYAGDQP-MEVSLTKNGR----VVQ-----S--------DDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNL 70 (591)
Q Consensus 10 G~~~~l~C~~~~~p~-~~v~W~~~~~----~~~-----~--------~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~ 70 (591)
|++|+|.|....... ..+.|+|... .+. . .+|..+. ......+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 899999999765433 3699998531 110 0 1121221 1223478999999999999999998
Q ss_pred E-cCCeeeEEEEEEEE
Q psy12425 71 S-NSSGSVSGTFTINI 85 (591)
Q Consensus 71 ~-n~~g~~~~~~~l~v 85 (591)
. ...|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 55677777787776
No 275
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.41 E-value=1.6e-06 Score=63.26 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=51.2
Q ss_pred eeeecCCeEEEEEEecc-CCCceEEEEECCE-----Ee--------ecCCceeEEE--eCCeEEEEEcccCCCCceEEEE
Q psy12425 5 LYIPEGDNTKVKIFYAG-DQPMEVSLTKNGR-----VV--------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGDYTV 68 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~-----~~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c 68 (591)
+.+.+|++|+|.|.+.. .....+.|+|... .+ ....|+.+.. .....+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 67899999999999875 3566889998642 11 1123444432 2345799999999999999999
Q ss_pred EEEcCC
Q psy12425 69 NLSNSS 74 (591)
Q Consensus 69 ~~~n~~ 74 (591)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987653
No 276
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.40 E-value=3e-06 Score=61.60 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=49.3
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEEecCCccCC-------------------CCCceEEEEeCCeEEEEEcceecccce
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------------------PSARHHIFAEGDTYTLIINSVYGVDAD 361 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g 361 (591)
+..+.+|+++.|.|.........+.|+|+..... ...+..+..+| +|.|.+++..|+|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G 83 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG 83 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence 4457899999999975444445899999532110 12333444444 7999999999999
Q ss_pred EEEEEEEeCCc
Q psy12425 362 EYVCRAVNKGG 372 (591)
Q Consensus 362 ~y~c~a~n~~g 372 (591)
.|+|.+.+...
T Consensus 84 ~Y~~~v~~~~~ 94 (105)
T cd05774 84 FYTLQTITTNF 94 (105)
T ss_pred EEEEEEEeCCc
Confidence 99999998764
No 277
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.39 E-value=1.5e-06 Score=61.78 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=49.0
Q ss_pred eeeeecCCeEEEEEEecc-CCCce--EEEEECCEEeecCCceeE--EEeCCeEEEEEcccCCCCce-EEEEEEEcCCee
Q psy12425 4 ALYIPEGDNTKVKIFYAG-DQPME--VSLTKNGRVVQSDDRFKF--TVLDDYIIIFIKEIRKEDAG-DYTVNLSNSSGS 76 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~~g~ 76 (591)
+-.+.+|+.++|+|.+.| .|.+. |.|||+++.+........ .......+|.+. +.++|.| .|+|.|.+..+.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 344789999999999987 77776 799999999865321110 011123567775 4455555 999999877543
No 278
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.38 E-value=2.2e-06 Score=64.08 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=52.4
Q ss_pred ccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC----------------CCCCceEEEEeC-CeEEEEEcceeccc
Q psy12425 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI----------------TPSARHHIFAEG-DTYTLIINSVYGVD 359 (591)
Q Consensus 299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~----------------~~~~~~~~~~~~-~~~~l~i~~~~~~d 359 (591)
+....+.+|++++|.|.+.+ +...+.|++... .. ....++...... ..++|.|.+++++|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 34566889999999999988 677899998532 11 012334433332 46789999999999
Q ss_pred ceEEEEEEEeCC
Q psy12425 360 ADEYVCRAVNKG 371 (591)
Q Consensus 360 ~g~y~c~a~n~~ 371 (591)
+|.|.|.+.+..
T Consensus 84 sg~Y~Ca~~~~~ 95 (110)
T cd05899 84 SAVYLCASSLGG 95 (110)
T ss_pred CEEEEEEeeCCC
Confidence 999999997643
No 279
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.38 E-value=2.2e-06 Score=63.49 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=48.2
Q ss_pred eeeecCCeEEEEEEeccC-CCceEEEEECCE-----E----e--e-----------cCCceeEEE--eCCeEEEEEcccC
Q psy12425 5 LYIPEGDNTKVKIFYAGD-QPMEVSLTKNGR-----V----V--Q-----------SDDRFKFTV--LDDYIIIFIKEIR 59 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~-----~----~--~-----------~~~~~~~~~--~~~~~~l~i~~~~ 59 (591)
+.|.+|++|+|.|.+.+. ....+.|||-.. . + . ...++.+.. ......|+|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 468999999999998753 355899998421 1 0 0 013444322 2345789999999
Q ss_pred CCCceEEEEEEEc
Q psy12425 60 KEDAGDYTVNLSN 72 (591)
Q Consensus 60 ~~d~g~Y~c~~~n 72 (591)
++|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999864
No 280
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.36 E-value=7.8e-06 Score=55.30 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=54.9
Q ss_pred eeeeecCCeEEEEEEecc--CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 4 ALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
+-.+..|++++|+|.... .|.+.|.|...+...-. ....+..+|.+..+...|+|.++|.+.-........+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 446889999999999955 34559999875543211 1112445899999999999999999975544455666
Q ss_pred EEEEe
Q psy12425 82 TINIT 86 (591)
Q Consensus 82 ~l~v~ 86 (591)
.|.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 66664
No 281
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.36 E-value=4.4e-06 Score=61.96 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=51.7
Q ss_pred ccccceeccccEEEEEEEcCCC-CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425 299 LRNANAIQNHNAQFQCTITGCP-KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY 363 (591)
Q Consensus 299 ~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 363 (591)
+....+.+|++++|.|.+.+.. ...+.|++.. ... ....++.....+....|.|.+++++|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 3455678999999999997665 5679998742 110 011244444445567899999999999999
Q ss_pred EEEEEeC
Q psy12425 364 VCRAVNK 370 (591)
Q Consensus 364 ~c~a~n~ 370 (591)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9998653
No 282
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.36 E-value=3.8e-06 Score=58.52 Aligned_cols=63 Identities=8% Similarity=0.072 Sum_probs=42.4
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
+.|.|.+.+ .|.+.|.|+|+|+.+.... .......+ ...|.+.....++.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999977 5889999999999886432 11111111 134555444455567999999987543
No 283
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.33 E-value=7.2e-06 Score=58.25 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=52.7
Q ss_pred CeEEEEEEeccC-CCceEEEEECC----EEee-----------cC--CceeEE-EeCCeEEEEEcccCCCCceEEEEEE-
Q psy12425 11 DNTKVKIFYAGD-QPMEVSLTKNG----RVVQ-----------SD--DRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNL- 70 (591)
Q Consensus 11 ~~~~l~C~~~~~-p~~~v~W~~~~----~~~~-----------~~--~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~- 70 (591)
++++|.|..... ....|.|.|-. ..+. .. +|..+. ......+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 478999999743 34589998842 1111 11 233332 1222469999999999999999997
Q ss_pred EcCCeeeEEEEEEEEe
Q psy12425 71 SNSSGSVSGTFTINIT 86 (591)
Q Consensus 71 ~n~~g~~~~~~~l~v~ 86 (591)
....|..++++.|+|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 5667888888888873
No 284
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.31 E-value=1.9e-06 Score=62.60 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=49.2
Q ss_pred ecCCeEEEEEEeccC-C-CceEEEEECCEEeecCCc-eeEEEeCCe-----EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425 8 PEGDNTKVKIFYAGD-Q-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-----IIIFIKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 8 ~~G~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-----~~l~i~~~~~~d~g~Y~c~~~n~~g 75 (591)
..|+.+.|.|.+.|. | .+.++|++||..+..... .......+. +.|.|......|.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 479999999999995 6 478999999998876543 222222221 3566666666699999999987654
No 285
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=4.3e-06 Score=58.01 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=43.2
Q ss_pred EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
++|.|.+.| +|+..++|+|||+.+............+ ...|.|..-..++...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999988 7889999999999986543222211111 2466666555566779999998764
No 286
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=4.5e-06 Score=62.06 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=52.1
Q ss_pred ceeccccEEEEEEEcCC-CCCeeEEecCCcc--C---------------CCCCceEEEEeC--CeEEEEEcceecccceE
Q psy12425 303 NAIQNHNAQFQCTITGC-PKPTISWLKGSRE--I---------------TPSARHHIFAEG--DTYTLIINSVYGVDADE 362 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~--~---------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~ 362 (591)
.+.+|+.+.|.|.+... +...+.|++.... . ....++.+..+. ...+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 6778999884321 0 112344444443 57799999999999999
Q ss_pred EEEEEEeCCc
Q psy12425 363 YVCRAVNKGG 372 (591)
Q Consensus 363 y~c~a~n~~g 372 (591)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 287
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.30 E-value=3.3e-06 Score=62.00 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=48.1
Q ss_pred eeecCCeEEEEEEeccCCCceEEEEECCE----E---e---ec------------CCceeEEEeCCeEEEEEcccCCCCc
Q psy12425 6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGR----V---V---QS------------DDRFKFTVLDDYIIIFIKEIRKEDA 63 (591)
Q Consensus 6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~----~---~---~~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 63 (591)
.+.+|++|+|.|.+.......+.|+|-.. . | .. ..++..........|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 47899999999998655456799998431 1 1 00 1223333445667899999999999
Q ss_pred eEEEEEEEc
Q psy12425 64 GDYTVNLSN 72 (591)
Q Consensus 64 g~Y~c~~~n 72 (591)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999764
No 288
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.26 E-value=8.6e-06 Score=60.43 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=56.5
Q ss_pred CCCeEEEEEeeeccC------CCeEEEeeCC-----e-Eee--eccc------e--EEE---ecCCeeEEEEeccCCCcc
Q psy12425 402 KGENVVVKIPFTGYP------KPKITWYRDN-----E-VIE--SGGH------F--HVE---TSERHAILTIRDASNVDT 456 (591)
Q Consensus 402 ~g~~~~l~c~~~~~p------~~~v~W~~~~-----~-~~~--~~~~------~--~~~---~~~~~~~l~i~~~~~~~~ 456 (591)
.|+.++|.|.....+ ...|.|++.. . .+. .+.. + .+. .......|.|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999987653 5689999862 1 110 1111 1 111 123578999999999999
Q ss_pred eeEEEEEEcCCCccceEEEEEecC
Q psy12425 457 APYRVVAENDLGMDSAIVKIQISD 480 (591)
Q Consensus 457 g~y~c~a~n~~g~~~~~~~~~v~~ 480 (591)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888778888887764
No 289
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.26 E-value=9.8e-06 Score=59.74 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCeEEEEEeeeccC------------CCeEEEeeCC--e--E-ee-e------c----cceEEEe---cCCeeEEEEecc
Q psy12425 403 GENVVVKIPFTGYP------------KPKITWYRDN--E--V-IE-S------G----GHFHVET---SERHAILTIRDA 451 (591)
Q Consensus 403 g~~~~l~c~~~~~p------------~~~v~W~~~~--~--~-~~-~------~----~~~~~~~---~~~~~~l~i~~~ 451 (591)
|++++|.|...... .+.|.|++.. . . +. . . +++.+.. ......|+|.++
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 78999999987543 4689999842 1 0 10 0 1 2333322 336789999999
Q ss_pred CCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425 452 SNVDTAPYRVVAENDLGMDSAIVKIQISD 480 (591)
Q Consensus 452 ~~~~~g~y~c~a~n~~g~~~~~~~~~v~~ 480 (591)
+..|+|.|.|.+.+..........|.|..
T Consensus 82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999998877777777777754
No 290
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.26 E-value=8e-06 Score=57.54 Aligned_cols=76 Identities=45% Similarity=0.644 Sum_probs=52.1
Q ss_pred CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEEecee-eeeEEEEcCcccCceEEEEEEEEcC
Q psy12425 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIRVGNT-RFTTMAITGLSPGHQYEFRVYAENV 559 (591)
Q Consensus 484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~~~~~-~~~~~~i~~l~~~~~Y~~~v~A~n~ 559 (591)
+|..+.+......++.|+|++|...+. .+|.+.+..... ..|...... ....+.+.+|.+++.|.|+|+|.+.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~ 79 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNG 79 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcc
Confidence 445566766667799999997643321 556666554322 235444222 2578999999999999999999998
Q ss_pred CcC
Q psy12425 560 YGR 562 (591)
Q Consensus 560 ~G~ 562 (591)
.|.
T Consensus 80 ~g~ 82 (83)
T smart00060 80 AGE 82 (83)
T ss_pred cCC
Confidence 764
No 291
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.25 E-value=8.5e-06 Score=61.69 Aligned_cols=69 Identities=16% Similarity=0.350 Sum_probs=52.0
Q ss_pred ccceeccccEEEEEEEcC--CCCCeeEEecCC--ccC-----------------CCCCceEEEEeC--CeEEEEEcceec
Q psy12425 301 NANAIQNHNAQFQCTITG--CPKPTISWLKGS--REI-----------------TPSARHHIFAEG--DTYTLIINSVYG 357 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~--~~~~l~i~~~~~ 357 (591)
.+.+.+|+.++|.|.+.+ .+.+.+.|++.. ... ....++.+..+. ...+|.|.+++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 455788999999999977 677889999842 111 012455555555 578999999999
Q ss_pred ccceEEEEEEEe
Q psy12425 358 VDADEYVCRAVN 369 (591)
Q Consensus 358 ~d~g~y~c~a~n 369 (591)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999864
No 292
>PHA03376 BARF1; Provisional
Probab=98.25 E-value=1.2e-05 Score=62.54 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=53.0
Q ss_pred eeeeecCCeEEEEEEecc---CCCceEEEEECCE----E-------------eecCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425 4 ALYIPEGDNTKVKIFYAG---DQPMEVSLTKNGR----V-------------VQSDDRFKFTVLDDYIIIFIKEIRKEDA 63 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~---~p~~~v~W~~~~~----~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 63 (591)
++.+..|+.+.|+|...- .+...|.|+|.+. . .....++.+....++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 578899999999999852 4566899999421 1 1111333344456788999999999999
Q ss_pred eEEEEEEEcCCe
Q psy12425 64 GDYTVNLSNSSG 75 (591)
Q Consensus 64 g~Y~c~~~n~~g 75 (591)
|.|+|.......
T Consensus 100 GtY~C~fQkge~ 111 (221)
T PHA03376 100 GNYLCRMKLGET 111 (221)
T ss_pred ceEEEEEEcCCC
Confidence 999999976543
No 293
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.21 E-value=1.6e-05 Score=58.98 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=53.7
Q ss_pred ccccEEEEEEEcCCC------CCeeEEecCCcc--------CCC----------CCceEEEEe-CCeEEEEEcceecccc
Q psy12425 306 QNHNAQFQCTITGCP------KPTISWLKGSRE--------ITP----------SARHHIFAE-GDTYTLIINSVYGVDA 360 (591)
Q Consensus 306 ~g~~~~l~c~~~~~p------~~~v~W~~~~~~--------~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~ 360 (591)
.|++++|.|.....| ...|.|++.... +.. ..+..+... ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999986653 457999985311 000 112222211 2345899999999999
Q ss_pred eEEEEEEEeCCcceeeeeEEEEe
Q psy12425 361 DEYVCRAVNKGGVKSTKAELIIM 383 (591)
Q Consensus 361 g~y~c~a~n~~g~~~~~~~l~v~ 383 (591)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988777777777764
No 294
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.20 E-value=2.3e-05 Score=53.37 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=43.6
Q ss_pred EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEE-eC--CeEEEEEcceecccceEEEEEEEeCC
Q psy12425 310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFA-EG--DTYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
+.|.|.+.| .|.+.|.|++++.++.......... .+ ...+|.|..-..+|...|+|+|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 689999966 7889999999998886542211111 11 13367776666667778999999865
No 295
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.20 E-value=1.9e-05 Score=57.85 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=30.0
Q ss_pred CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382 (591)
Q Consensus 346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v 382 (591)
+..+|.|.+++..|+|.|+|.+.+..+.....+.|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4568999999999999999999987766555555554
No 296
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.19 E-value=1.7e-05 Score=57.81 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=50.0
Q ss_pred ceeccccEEEEEEEcCC--CCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425 303 NAIQNHNAQFQCTITGC--PKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
.+.+|++++|.|...+. ....+.|++... .. ....++....++...+|.|.+++++|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 556799987322 11 112355555666778899999999999999999
Q ss_pred EEe
Q psy12425 367 AVN 369 (591)
Q Consensus 367 a~n 369 (591)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 297
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.12 E-value=3.3e-05 Score=56.45 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=49.1
Q ss_pred ccEEEEEEEcCCC---CCeeEEecCCcc---------------CCCCCceEEEEeC---CeEEEEEcceecccceEEEEE
Q psy12425 308 HNAQFQCTITGCP---KPTISWLKGSRE---------------ITPSARHHIFAEG---DTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 308 ~~~~l~c~~~~~p---~~~v~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~ 366 (591)
+++.|.|.....+ ...|.|++.... +....+..+...+ ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 447999985431 0111111121111 356899999999999999999
Q ss_pred EEe-CCcceeeeeEEEE
Q psy12425 367 AVN-KGGVKSTKAELII 382 (591)
Q Consensus 367 a~n-~~g~~~~~~~l~v 382 (591)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5666666666655
No 298
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.11 E-value=1.9e-05 Score=59.43 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=50.6
Q ss_pred CceeeeecCCeEEEEEEeccCC--CceEEEEECC--E-E--e---e-----------cCCceeEEEeC--CeEEEEEccc
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKNG--R-V--V---Q-----------SDDRFKFTVLD--DYIIIFIKEI 58 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~~--~-~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~ 58 (591)
|..+.+.+|++|+|.|...+.. ...+.|||-. + + | . ..+|+...... ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 6788999999999999986532 4569999832 1 1 1 0 01344444332 3468999999
Q ss_pred CCCCceEEEEEEEc
Q psy12425 59 RKEDAGDYTVNLSN 72 (591)
Q Consensus 59 ~~~d~g~Y~c~~~n 72 (591)
+++|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998865
No 299
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.09 E-value=2.2e-05 Score=56.55 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=46.4
Q ss_pred cccEEEEEEEcCCCCCeeEEecCCccCCC------------------CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425 307 NHNAQFQCTITGCPKPTISWLKGSREITP------------------SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368 (591)
Q Consensus 307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~ 368 (591)
|++|+|.|.........+.|++....... ..+..+..+ .+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 68899999987766778999986533211 011222222 589999999999999999998
Q ss_pred eCCcce
Q psy12425 369 NKGGVK 374 (591)
Q Consensus 369 n~~g~~ 374 (591)
...|..
T Consensus 78 ~~~~~~ 83 (92)
T cd05741 78 STNGVT 83 (92)
T ss_pred cCCCcE
Confidence 876443
No 300
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.09 E-value=2.5e-05 Score=55.64 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=50.5
Q ss_pred eccccceeccccEEEEEEEcC-CCCCe--eEEecCCccCCCCCceEE--EEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425 298 PLRNANAIQNHNAQFQCTITG-CPKPT--ISWLKGSREITPSARHHI--FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 298 ~~~~~~~~~g~~~~l~c~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
.+.+..+.+|+.++|+|.+.| .|.+. |.|++++..+........ .......+|.+..-..+|...|+|+|.+..+
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 334455789999999999977 67776 799999988854321110 0111234667665544555589999998765
Q ss_pred ce
Q psy12425 373 VK 374 (591)
Q Consensus 373 ~~ 374 (591)
..
T Consensus 87 ~~ 88 (100)
T cd05755 87 PE 88 (100)
T ss_pred cc
Confidence 44
No 301
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.03 E-value=3.8e-05 Score=55.53 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=53.1
Q ss_pred CCCeEEEEEeeec-cCCCeEEEeeCCeEeee-------------ccce--EEEecCCeeEEEEeccCCCcceeEEEEEEc
Q psy12425 402 KGENVVVKIPFTG-YPKPKITWYRDNEVIES-------------GGHF--HVETSERHAILTIRDASNVDTAPYRVVAEN 465 (591)
Q Consensus 402 ~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~-------------~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n 465 (591)
.|++|+|.|.... .....+.|++....+.. ...+ ++.......+|+|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5899999998754 55568999986432211 1111 223334568899999999999999999998
Q ss_pred CCCcc-ceEEEEEe
Q psy12425 466 DLGMD-SAIVKIQI 478 (591)
Q Consensus 466 ~~g~~-~~~~~~~v 478 (591)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 87665 44444443
No 302
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.03 E-value=7.7e-05 Score=53.10 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=47.9
Q ss_pred CeEEEEEEecc-CCCceEEEEECCE----Ee-----------ecC--CceeEEE-eCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 11 DNTKVKIFYAG-DQPMEVSLTKNGR----VV-----------QSD--DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 11 ~~~~l~C~~~~-~p~~~v~W~~~~~----~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
++++|.|.... ....+|.|.|-.. .+ ... +|..+.. .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 47899999864 3456889988421 11 111 2333321 1234689999999999999999985
Q ss_pred c-CCeeeEEEEEE
Q psy12425 72 N-SSGSVSGTFTI 83 (591)
Q Consensus 72 n-~~g~~~~~~~l 83 (591)
. ..|..+..+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 46666666554
No 303
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.03 E-value=3.2e-05 Score=55.47 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=46.8
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n 369 (591)
...+..|++|+|.|.... ....+.|+|++..............+....+.|.+++.+|+|.|.|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 345789999999998765 55689999987653211000000112233789999999999999999753
No 304
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.00 E-value=6.2e-05 Score=55.83 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=55.2
Q ss_pred CCeEEEEEeeeccC----------CCeEEEeeCC--eEee----------ec----cceEEE---ecCCeeEEEEeccCC
Q psy12425 403 GENVVVKIPFTGYP----------KPKITWYRDN--EVIE----------SG----GHFHVE---TSERHAILTIRDASN 453 (591)
Q Consensus 403 g~~~~l~c~~~~~p----------~~~v~W~~~~--~~~~----------~~----~~~~~~---~~~~~~~l~i~~~~~ 453 (591)
|++++|.|.....+ ...|.|++.. .... .. +++.+. .......|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78899999987644 3579999842 1110 01 122221 123568899999999
Q ss_pred CcceeEEEEEEcCCCccceEEEEEecC
Q psy12425 454 VDTAPYRVVAENDLGMDSAIVKIQISD 480 (591)
Q Consensus 454 ~~~g~y~c~a~n~~g~~~~~~~~~v~~ 480 (591)
.|.|.|.|.+..........+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998877778888887764
No 305
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.00 E-value=3.8e-05 Score=52.36 Aligned_cols=62 Identities=24% Similarity=0.299 Sum_probs=46.9
Q ss_pred EEEEEEeccCCCceEEEEECCEEeecCCce----eEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRF----KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
+.|.|.+.+.+...+.|++++......... ..........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988788899999998766443211 11122344689999999999999999998765
No 306
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.00 E-value=7.7e-05 Score=55.53 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=50.2
Q ss_pred eeecCCCeEEEEEeeecc----CCCeEEEee---------------CCeEee-ec----cceEEEe--cCCeeEEEEecc
Q psy12425 398 AYFDKGENVVVKIPFTGY----PKPKITWYR---------------DNEVIE-SG----GHFHVET--SERHAILTIRDA 451 (591)
Q Consensus 398 ~~~~~g~~~~l~c~~~~~----p~~~v~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~~~ 451 (591)
..+..|+.+.|.|..... +...|.|.+ +|.... .. ++..+.. .....+|.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 456789999999998663 345899933 222221 11 1222211 235678999999
Q ss_pred CCCcceeEEEEEEcCCCccc
Q psy12425 452 SNVDTAPYRVVAENDLGMDS 471 (591)
Q Consensus 452 ~~~~~g~y~c~a~n~~g~~~ 471 (591)
+..|.|.|+|.+.|..+...
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CcccCEEEEEEEEcCCCcCC
Confidence 99999999999999876543
No 307
>KOG4802|consensus
Probab=97.98 E-value=0.00035 Score=61.55 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=97.3
Q ss_pred CCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeec--CC-eEEE
Q psy12425 132 SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG--GD-FVNL 208 (591)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~-~v~l 208 (591)
....|+.+........+....+.|+..|.|++.|.|..|.-..+..+..........+|.+|.++.+..+. |. ...|
T Consensus 195 ~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v 274 (516)
T KOG4802|consen 195 GPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKV 274 (516)
T ss_pred ccccceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEE
Confidence 44568888777677788999999999999999999999886666666666666666677777776554432 22 3556
Q ss_pred EEecCCCCCCcceEEEEEEeeecCCC---ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC
Q psy12425 209 SWDKPLDDGGSRIQGYWIDKHEVGSD---AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP 275 (591)
Q Consensus 209 ~w~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~ 275 (591)
.|.++..+ -++..|.|.+...... ....-.........+.|..|.++..|.+.+.|....|....
T Consensus 275 ~w~P~~sd--lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 275 VWCPSKSD--LPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred EeCCCCCC--CcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 67765333 4788999987654310 11111111123345569999999999999999887776654
No 308
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.95 E-value=0.00017 Score=54.65 Aligned_cols=72 Identities=17% Similarity=0.413 Sum_probs=52.1
Q ss_pred ccccceeccccEEEEEEEc-CCCCCeeEEecCCc-----cCC--------------CCCceEEEEeC--CeEEEEEccee
Q psy12425 299 LRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSR-----EIT--------------PSARHHIFAEG--DTYTLIINSVY 356 (591)
Q Consensus 299 ~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~-----~~~--------------~~~~~~~~~~~--~~~~l~i~~~~ 356 (591)
+..+.+..|+++.|.|... ......+.|++... .+. ...+..+..+. ...+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4556788999999999998 55667899988322 000 01223333332 36789999999
Q ss_pred cccceEEEEEEEeC
Q psy12425 357 GVDADEYVCRAVNK 370 (591)
Q Consensus 357 ~~d~g~y~c~a~n~ 370 (591)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999876
No 309
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.95 E-value=9.7e-05 Score=55.37 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=49.3
Q ss_pred cceeecCCCeEEEEEeeeccC----CCeEEEeeC----CeE--ee---------eccce----EEE--ecCCeeEEEEec
Q psy12425 396 DTAYFDKGENVVVKIPFTGYP----KPKITWYRD----NEV--IE---------SGGHF----HVE--TSERHAILTIRD 450 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~----~~~--~~---------~~~~~----~~~--~~~~~~~l~i~~ 450 (591)
..+.+..|+.+.|.|.....+ ...|.|++. +.. +. ...++ .+. .......|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 345678899999999986543 236999741 111 10 01111 111 123467899999
Q ss_pred cCCCcceeEEEEEEcCCCc
Q psy12425 451 ASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 451 ~~~~~~g~y~c~a~n~~g~ 469 (591)
++.+|+|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999988664
No 310
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.93 E-value=8.2e-05 Score=51.80 Aligned_cols=65 Identities=25% Similarity=0.441 Sum_probs=42.2
Q ss_pred EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCCcce
Q psy12425 310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
+.|.|.+.+ +|.+.|.|++++..+..........+++.+ .|.+.....++...|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999966 588999999999887643311111222221 34444444556679999999876543
No 311
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.92 E-value=0.00012 Score=53.85 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=44.0
Q ss_pred eeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCce-EEEEEEEcCC
Q psy12425 6 YIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAG-DYTVNLSNSS 74 (591)
Q Consensus 6 ~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g-~Y~c~~~n~~ 74 (591)
++..|+.++|.|.+.| .|. ..++|+|||+.+...........++ .+.|.+. +...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 3567889999999998 564 6999999999986532211111221 2345554 3444544 4999997654
No 312
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.91 E-value=0.00016 Score=50.28 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=44.5
Q ss_pred EEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEecCC------eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425 406 VVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVETSER------HAILTIRDASNVDTAPYRVVAENDLGMD 470 (591)
Q Consensus 406 ~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~~g~y~c~a~n~~g~~ 470 (591)
+.|.|.+.+. |.+.|+|+++|..+..... .+...+. .+.|.+.....++...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 5799999764 8899999999988765332 2322222 2344454555677789999999886544
No 313
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.90 E-value=9.2e-05 Score=50.49 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=40.8
Q ss_pred eEEEEEEecc-CCC-ceEEEEECCEEeecCCc-eeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcC
Q psy12425 12 NTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDR-FKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 12 ~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
.++|.|.+.| .|+ ..+.|+|||+.+..+.. ......++ .+.|.|.....++...|+|.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 3789999999 455 69999999997543311 11111122 145666666667778999999654
No 314
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.89 E-value=6e-05 Score=54.71 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=48.3
Q ss_pred cCCCeEEEEEeeecc-C-CCeEEEeeCCeEeeeccc-eEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425 401 DKGENVVVKIPFTGY-P-KPKITWYRDNEVIESGGH-FHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGM 469 (591)
Q Consensus 401 ~~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~ 469 (591)
..|..+.|.|.+.|. | .+.++|+++|..+..... .......+ .+.|.+......+.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 358899999999997 5 368999999998865443 22221111 234555555556999999999987553
No 315
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.88 E-value=0.014 Score=52.09 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=120.6
Q ss_pred CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-- 321 (591)
Q Consensus 245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-- 321 (591)
....+.|.++...++|.|++...+...... .+....+.+. ..+|.+...+ ..+.+|+...-.|.+..+ |.
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i-~e~~~~~~v~----~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~S 277 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPL-LDKHIYIRVC----QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGS 277 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCcc-ccceEEEEEE----ecCCCccccC--CccccCCCceEEEEeeeecCCCc
Confidence 446788999999999988777665433322 1222223222 3556555433 336899999999999774 33
Q ss_pred CeeEEecCCccCCCCCceEEE---EeCC-----eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425 322 PTISWLKGSREITPSARHHIF---AEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393 (591)
Q Consensus 322 ~~v~W~~~~~~~~~~~~~~~~---~~~~-----~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 393 (591)
..+.|+.||..+......... .++. ..++.+.+......-..+|.+.-..+...... .-...|.+-.+|.
T Consensus 278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ 355 (490)
T PHA03271 278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPR 355 (490)
T ss_pred eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCccccCCe
Confidence 368999998877543321111 1111 12333333322233479999875544332221 3333344433333
Q ss_pred cccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeeccc---eEEEecCCeeEEEEec-cCCCc---ceeEEEEEEc
Q psy12425 394 FRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGH---FHVETSERHAILTIRD-ASNVD---TAPYRVVAEN 465 (591)
Q Consensus 394 ~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~-~~~~~---~g~y~c~a~n 465 (591)
+ ...+..|.- .|.+.-.| ...+.|+.++........ ..-.-.+......|.+ +...| --.|+|++..
T Consensus 356 I--Sv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 356 I--SLAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred E--EEEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence 2 223344433 35554443 448999987765432100 0001112233344444 22222 3589999874
Q ss_pred -CCCccceEEEEEecCCCCCCCCCeeee
Q psy12425 466 -DLGMDSAIVKIQISDRPDPPQFPTVED 492 (591)
Q Consensus 466 -~~g~~~~~~~~~v~~~p~~p~~~~~~~ 492 (591)
..+.......-.....|..+....+..
T Consensus 431 YP~~lP~Fe~t~tYDASP~a~~~PmVis 458 (490)
T PHA03271 431 YPFDEDKFQASEYYDATPSARGSPMVLT 458 (490)
T ss_pred cCCCCCccceeeeecCCCccCCCcEEEE
Confidence 233334444444445566666555443
No 316
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.86 E-value=0.00018 Score=54.29 Aligned_cols=73 Identities=16% Similarity=0.376 Sum_probs=47.4
Q ss_pred cccceeccccEEEEEEEcCCC----CCeeEEecCCc--c----C---------C-CCCc----eEEEE--eCCeEEEEEc
Q psy12425 300 RNANAIQNHNAQFQCTITGCP----KPTISWLKGSR--E----I---------T-PSAR----HHIFA--EGDTYTLIIN 353 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~~--~----~---------~-~~~~----~~~~~--~~~~~~l~i~ 353 (591)
..+.+..|+.++|.|...... ...+.|++... . + . ...+ ..+.. ..+..+|+|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 445678999999999985432 25699976321 0 0 0 0111 11211 1224689999
Q ss_pred ceecccceEEEEEEEeCCc
Q psy12425 354 SVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 354 ~~~~~d~g~y~c~a~n~~g 372 (591)
+++.+|+|.|.|.+.|...
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999988644
No 317
>KOG4367|consensus
Probab=97.84 E-value=1.7e-05 Score=69.77 Aligned_cols=81 Identities=27% Similarity=0.260 Sum_probs=70.3
Q ss_pred ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceE
Q psy12425 493 IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 572 (591)
Q Consensus 493 ~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~ 572 (591)
...++++|.|..|..+ +.+..+|.++.....++.++.+..+..+..++.+|.-++.|.-||.|.|..|.++.|.....
T Consensus 450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l- 527 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL- 527 (699)
T ss_pred ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe-
Confidence 4578999999976644 56899999999998899999998888899999999999999999999999999999986543
Q ss_pred Eec
Q psy12425 573 TTY 575 (591)
Q Consensus 573 ~t~ 575 (591)
.|.
T Consensus 528 qts 530 (699)
T KOG4367|consen 528 QTS 530 (699)
T ss_pred eec
Confidence 444
No 318
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.83 E-value=0.00013 Score=55.10 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred ccccceeccccEEEEEEEcCC-CCCeeEEecCC--ccC------------CCCCceEEEE--eCCeEEEEEcceecccce
Q psy12425 299 LRNANAIQNHNAQFQCTITGC-PKPTISWLKGS--REI------------TPSARHHIFA--EGDTYTLIINSVYGVDAD 361 (591)
Q Consensus 299 ~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~--~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g 361 (591)
+..+.+..|+++.|.|..... ....+.|++.. ... ....++.+.. .....+|.|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 345668899999999998653 45679998732 110 1123454442 345678999999999999
Q ss_pred EEEEEEEe
Q psy12425 362 EYVCRAVN 369 (591)
Q Consensus 362 ~y~c~a~n 369 (591)
.|.|.+..
T Consensus 86 ~Y~C~~~~ 93 (116)
T cd07706 86 KYFCALST 93 (116)
T ss_pred EEEEEEEC
Confidence 99999875
No 319
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.82 E-value=0.00045 Score=46.99 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=50.7
Q ss_pred ceeccccEEEEEEEcCCCC--CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425 303 NAIQNHNAQFQCTITGCPK--PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l 380 (591)
.+..|++++|+|.....+. +.|.|...+..... ....+..+|.+..+...|+|.++|.+.-..-.......+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 4788999999999966444 49999875544221 111234589999999999999999997543333344444
Q ss_pred EE
Q psy12425 381 II 382 (591)
Q Consensus 381 ~v 382 (591)
.|
T Consensus 84 ~V 85 (88)
T cd07694 84 KV 85 (88)
T ss_pred EE
Confidence 43
No 320
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.81 E-value=9.5e-05 Score=51.75 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred eEEEEEEeccCCC--ceEEEEECCE-----Ee----------e---cCCceeEEEe--CCeEEEEEcccCCCCceEEEEE
Q psy12425 12 NTKVKIFYAGDQP--MEVSLTKNGR-----VV----------Q---SDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVN 69 (591)
Q Consensus 12 ~~~l~C~~~~~p~--~~v~W~~~~~-----~~----------~---~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~ 69 (591)
++.|.|.+..... ..+.|++... .+ . ...|+.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999976444 3899988531 11 0 1234444433 4568899999999999999996
Q ss_pred E
Q psy12425 70 L 70 (591)
Q Consensus 70 ~ 70 (591)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 321
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.78 E-value=0.00067 Score=49.94 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.0
Q ss_pred eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383 (591)
Q Consensus 347 ~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 383 (591)
..+|.|.+++..|+|.|+|.+.+........+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 4589999999999999999999988777777777764
No 322
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.78 E-value=0.00022 Score=52.83 Aligned_cols=67 Identities=24% Similarity=0.458 Sum_probs=46.2
Q ss_pred ceeccccEEEEEEEcCC-CCCeeEEecCCcc---C--------C-----------CCCceEEE--EeCCeEEEEEcceec
Q psy12425 303 NAIQNHNAQFQCTITGC-PKPTISWLKGSRE---I--------T-----------PSARHHIF--AEGDTYTLIINSVYG 357 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 357 (591)
.+..|+.++|.|.+.+. ....+.|++.... . . ...++.+. ..+....|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 36789999999998763 3457999984321 0 0 01233332 233456899999999
Q ss_pred ccceEEEEEEEe
Q psy12425 358 VDADEYVCRAVN 369 (591)
Q Consensus 358 ~d~g~y~c~a~n 369 (591)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 323
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.76 E-value=0.00017 Score=50.03 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=42.7
Q ss_pred EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEE-eCCe----EEEEEcceecccceEEEEEEEeCCcc
Q psy12425 310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFA-EGDT----YTLIINSVYGVDADEYVCRAVNKGGV 373 (591)
Q Consensus 310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~----~~l~i~~~~~~d~g~y~c~a~n~~g~ 373 (591)
++|.|.+.| +|.+.|.|++++..+.......... .++. .+|.+..-..++...|+|++.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999977 7888999999999876543222222 2222 24555544456677899999886543
No 324
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.75 E-value=0.00033 Score=51.50 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=31.1
Q ss_pred CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383 (591)
Q Consensus 346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 383 (591)
+..+|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 35689999999999999999999866566666777664
No 325
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.74 E-value=0.00041 Score=50.51 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=48.8
Q ss_pred eEEEEEeeeccC---CCeEEEeeCCe-----Eee---e----------ccceEEEe--cCCeeEEEEeccCCCcceeEEE
Q psy12425 405 NVVVKIPFTGYP---KPKITWYRDNE-----VIE---S----------GGHFHVET--SERHAILTIRDASNVDTAPYRV 461 (591)
Q Consensus 405 ~~~l~c~~~~~p---~~~v~W~~~~~-----~~~---~----------~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c 461 (591)
+++|.|.....+ ...|.|++... .+. . .++..+.. ......|+|.+++..|.|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578899886544 34789988321 110 0 02223332 2346789999999999999999
Q ss_pred EEEc-CCCccceEEEEEe
Q psy12425 462 VAEN-DLGMDSAIVKIQI 478 (591)
Q Consensus 462 ~a~n-~~g~~~~~~~~~v 478 (591)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6676666666655
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.73 E-value=0.00022 Score=52.43 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=46.9
Q ss_pred eeccccEEEEEEEcCCCCCeeEEecCCcc----C------CC------------CCceEEEEeCCeEEEEEcceecccce
Q psy12425 304 AIQNHNAQFQCTITGCPKPTISWLKGSRE----I------TP------------SARHHIFAEGDTYTLIINSVYGVDAD 361 (591)
Q Consensus 304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g 361 (591)
+..|+.++|.|.........+.|++.... . .. ..++..........|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57899999999986655567999884321 1 00 11233334456778999999999999
Q ss_pred EEEEEEEe
Q psy12425 362 EYVCRAVN 369 (591)
Q Consensus 362 ~y~c~a~n 369 (591)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998753
No 327
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.71 E-value=0.00036 Score=50.83 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=48.3
Q ss_pred ceeccccEEEEEEEcC-CCCCeeEEecCCccC-------------CCCCceEEEE--eCCeEEEEEcceecccceEEEEE
Q psy12425 303 NAIQNHNAQFQCTITG-CPKPTISWLKGSREI-------------TPSARHHIFA--EGDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 303 ~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
.+.+|++++|.|.... .....+.|++..... ....++.+.. .....+|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4678999999999865 456678998853211 1123344432 24567899999999999999999
Q ss_pred EEeC
Q psy12425 367 AVNK 370 (591)
Q Consensus 367 a~n~ 370 (591)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8764
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.71 E-value=0.00021 Score=50.92 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 10 GDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 10 G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
|+.+.|.|.+.+ +|++.++|+.++..+............+ .+.|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 679999998755 8999999999998772111111111111 245666654455677899999887543
No 329
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.70 E-value=9.1e-05 Score=46.92 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=36.7
Q ss_pred ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425 8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
-.|.+|+|+|...+. .+.|++|+..+..+.. .+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 469999999987633 2999999966544321 33344444 8899999999644
No 330
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.69 E-value=0.00063 Score=48.98 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=32.0
Q ss_pred CeeEEEEeccCCCcceeEEEEEEc-CCCccceEEEEEe
Q psy12425 442 RHAILTIRDASNVDTAPYRVVAEN-DLGMDSAIVKIQI 478 (591)
Q Consensus 442 ~~~~l~i~~~~~~~~g~y~c~a~n-~~g~~~~~~~~~v 478 (591)
...+|.|.+++..|.|.|.|.+.| ..|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 358899999999999999999999 6787777777765
No 331
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.69 E-value=0.00032 Score=50.11 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=40.4
Q ss_pred ecCCeEEEEEEecc-CCC-ceEEEEECCEEeecC-CceeEEEeCC-e-EEEEEcccCCCCceEEEEEEEcC
Q psy12425 8 PEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSD-DRFKFTVLDD-Y-IIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 8 ~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~-~~~~~~~~~~-~-~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
..|+.++|.|.+.| .|. ..+.|+|||+.+... ........++ . .......+.+++...|.|.+.-.
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 46899999999999 554 489999999987654 1111212222 1 11111233345566899998654
No 332
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.66 E-value=0.0001 Score=53.50 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=43.4
Q ss_pred eeecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEe-CCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425 6 YIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVL-DDY----IIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 6 ~v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~----~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
...+++.++|.|.+.| +| ...|.|+|||+.+..+.. ...... ++. +.|.+..-.-.+...|+|.+...
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 4457889999999998 55 678999999998854311 111111 221 34445444434466899998754
No 333
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.66 E-value=0.0005 Score=54.30 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=61.2
Q ss_pred ceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeee------------ccceE-EEecCCeeEEEEeccCCCcceeEEEE
Q psy12425 397 TAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIES------------GGHFH-VETSERHAILTIRDASNVDTAPYRVV 462 (591)
Q Consensus 397 ~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~------------~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~ 462 (591)
...+.+|+++.|.|... +...+.+.|.+....+.. .+++. +......+.|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 34568899999999984 667889999986443310 12333 23334578899999999999999999
Q ss_pred EEc-CCC-ccceEEEEEecCC
Q psy12425 463 AEN-DLG-MDSAIVKIQISDR 481 (591)
Q Consensus 463 a~n-~~g-~~~~~~~~~v~~~ 481 (591)
... ..| ..+...-|.|++.
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 864 345 5677777877653
No 334
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.64 E-value=0.0003 Score=50.11 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=42.4
Q ss_pred eecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCc-ee-EEEeCCe----EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425 7 IPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDR-FK-FTVLDDY----IIIFIKEIRKEDAGDYTVNLSNSSG 75 (591)
Q Consensus 7 v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~-~~-~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n~~g 75 (591)
...++.++|.|.+.| .|. ..|.|.|||+.+..... .. ....++. +.|.|..-.-.+...|+|.+.....
T Consensus 11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 345677999999999 554 78999999998743311 11 1111222 3444443333355689999976543
No 335
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.63 E-value=0.00039 Score=50.39 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=47.7
Q ss_pred cccEEEEEEEcCCCC-CeeEEecCCccCC---------C--------CCceEEE-EeCCeEEEEEcceecccceEEEEEE
Q psy12425 307 NHNAQFQCTITGCPK-PTISWLKGSREIT---------P--------SARHHIF-AEGDTYTLIINSVYGVDADEYVCRA 367 (591)
Q Consensus 307 g~~~~l~c~~~~~p~-~~v~W~~~~~~~~---------~--------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a 367 (591)
|++++|.|....... ..+.|++...... . ..+..+. .+....+|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 3689987422100 0 0111111 1223458999999999999999997
Q ss_pred E-eCCcceeeeeEEEE
Q psy12425 368 V-NKGGVKSTKAELII 382 (591)
Q Consensus 368 ~-n~~g~~~~~~~l~v 382 (591)
. ...|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 45666666666655
No 336
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.62 E-value=0.00072 Score=51.20 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=47.7
Q ss_pred cccceeccccEEEEEEEcCCC------CCeeEEecCCcc-----C----C--------CCCceEEE--EeCCeEEEEEcc
Q psy12425 300 RNANAIQNHNAQFQCTITGCP------KPTISWLKGSRE-----I----T--------PSARHHIF--AEGDTYTLIINS 354 (591)
Q Consensus 300 ~~~~~~~g~~~~l~c~~~~~p------~~~v~W~~~~~~-----~----~--------~~~~~~~~--~~~~~~~l~i~~ 354 (591)
..+.+.+|+.|.|.|...... ...+.|++.... + . -..++.+. ......+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 445688999999999875322 346899974321 0 0 01233332 234457899999
Q ss_pred eecccceEEEEEEEeC
Q psy12425 355 VYGVDADEYVCRAVNK 370 (591)
Q Consensus 355 ~~~~d~g~y~c~a~n~ 370 (591)
++.+|+|.|.|+....
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998664
No 337
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.58 E-value=0.0018 Score=46.52 Aligned_cols=83 Identities=41% Similarity=0.657 Sum_probs=60.8
Q ss_pred CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG 271 (591)
Q Consensus 192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g 271 (591)
+|..+.+......++.|+|..+.... ..+..|.+.+.......|............+.+.+|.++..|.+++++.+..|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~ 81 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence 34445555666789999999875433 35678999888766566766654323567889999999999999999998766
Q ss_pred CCCC
Q psy12425 272 LSLP 275 (591)
Q Consensus 272 ~~~~ 275 (591)
.+..
T Consensus 82 ~~~~ 85 (93)
T cd00063 82 ESPP 85 (93)
T ss_pred cCCC
Confidence 6543
No 338
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.58 E-value=0.00048 Score=49.37 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=39.9
Q ss_pred CCeEEEEEEecc-CCC-ceEEEEECCEEeecCC-ceeEEEeCC-e-EEEEEcccCCCCceEEEEEEEcCC
Q psy12425 10 GDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDD-RFKFTVLDD-Y-IIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 10 G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~-~~~~~~~~~-~-~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
|+.++|.|.+.| .|. ..+.|.|+|+.+.... .......++ . .......+.+.+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 778999999999 454 4999999997433221 112222222 2 112233344457889999997653
No 339
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.57 E-value=0.0006 Score=48.26 Aligned_cols=65 Identities=15% Similarity=0.361 Sum_probs=40.4
Q ss_pred ecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe-E-EEEEcccCCCCceEEEEEEEcC
Q psy12425 8 PEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-I-IIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 8 ~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-~-~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
..|+..+|.|.+.| .| ...++|.|||+.+. +.. ..+...++. . ......+.+.+.-.|.|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 44667799999999 44 56889999999886 321 122222222 1 1112234566777799998653
No 340
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.46 E-value=0.00046 Score=51.05 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=44.1
Q ss_pred eeeeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCce-eEEEeC--Ce----EEEEEcccCCCC-ceEEEEEEEcC
Q psy12425 4 ALYIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRF-KFTVLD--DY----IIIFIKEIRKED-AGDYTVNLSNS 73 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~-~~~~~~--~~----~~l~i~~~~~~d-~g~Y~c~~~n~ 73 (591)
...+.+++.++|.|.+.| .|. ..|+|+|||+.+..+... ...... +. +.|.|..-+-.+ .-.|+|.+.-.
T Consensus 12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence 344556788999999998 565 589999999988654221 111111 11 345555433323 45799998755
Q ss_pred C
Q psy12425 74 S 74 (591)
Q Consensus 74 ~ 74 (591)
.
T Consensus 92 g 92 (115)
T cd05769 92 G 92 (115)
T ss_pred C
Confidence 3
No 341
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.46 E-value=0.00094 Score=48.46 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=48.3
Q ss_pred CceeeeecCCeEEEEEEeccCC--C-ceEEEEEC--CE-E-----------e-ecCCceeEE--EeCCeEEEEEcccCCC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQ--P-MEVSLTKN--GR-V-----------V-QSDDRFKFT--VLDDYIIIFIKEIRKE 61 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p--~-~~v~W~~~--~~-~-----------~-~~~~~~~~~--~~~~~~~l~i~~~~~~ 61 (591)
+....+..|+.++|.|.++|.- . ..++|.|. |. + . ....++.+. ...+..+|+|.+|+.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3467899999999999997743 3 46889884 21 0 0 011233222 3445689999999999
Q ss_pred CceEEEEEE
Q psy12425 62 DAGDYTVNL 70 (591)
Q Consensus 62 d~g~Y~c~~ 70 (591)
|++.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999975
No 342
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.46 E-value=0.061 Score=48.66 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=116.8
Q ss_pred CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-- 321 (591)
Q Consensus 245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-- 321 (591)
....|.|..|...++|.|.-+..+..+..... ....+... .+|.+... ...+.+|+...-.|.+..+ |.
T Consensus 180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~-~~VtV~~y-----r~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~S 251 (466)
T PHA03270 180 PTQRLVIQELTLATQGMYYWARGPADRPHRYG-TWTRVRMF-----RRPSLSIR--PHAVLEGEPFGATCVAANYYPGDR 251 (466)
T ss_pred CcceEEEEEcccccceEEEEEEecCCCceeee-eEEEEEEe-----cCCccccc--CCccccCCCceEEEEeeeecCCCc
Confidence 44678999999999999999987766532221 22333332 45665443 3347899999999999764 33
Q ss_pred CeeEEecCCccCCCCCceE--EE--EeCC--eEEEEEcceecc-cceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCc
Q psy12425 322 PTISWLKGSREITPSARHH--IF--AEGD--TYTLIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394 (591)
Q Consensus 322 ~~v~W~~~~~~~~~~~~~~--~~--~~~~--~~~l~i~~~~~~-d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 394 (591)
..+.|+.|+..+....... .. .++- ..++++...... ..-..+|.+.-..+..+.+ .+.-...|.+-.+|.+
T Consensus 252 v~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~s-R~nAa~~P~VY~~P~I 330 (466)
T PHA03270 252 AAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFS-RRNATGAPTVLPRPTI 330 (466)
T ss_pred eEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccce-eecccccCccccCCeE
Confidence 3689999999885422211 11 2221 113333222211 1136889976443332111 1122222333222221
Q ss_pred ccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeeccceEEE--ecCCeeEEEEe---ccCCCcceeEEEEEEcC-C
Q psy12425 395 RDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVE--TSERHAILTIR---DASNVDTAPYRVVAEND-L 467 (591)
Q Consensus 395 ~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~---~~~~~~~g~y~c~a~n~-~ 467 (591)
.+.+..|.- .|.+.-.| ...+.|+.++......+..... -.+......|. .++. +...|+|.+.-- .
T Consensus 331 --sv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd-~~~eYTCrl~GYP~ 404 (466)
T PHA03270 331 --EMEFGGDEA---VCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSR-EHSEYTCRLVGYPA 404 (466)
T ss_pred --EEEEeCCEE---EEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeeccccccc-CCceEEEEEeecCC
Confidence 122333432 35554444 4489999887665433221111 11112222222 2222 336999998732 2
Q ss_pred CccceEEEEEecCCCCCCCCCee
Q psy12425 468 GMDSAIVKIQISDRPDPPQFPTV 490 (591)
Q Consensus 468 g~~~~~~~~~v~~~p~~p~~~~~ 490 (591)
+--..+.+......|..|....+
T Consensus 405 ~lP~fe~~~~~dasP~~~~~~~V 427 (466)
T PHA03270 405 TVPVLEHHGRHEPPPRDPVGQQV 427 (466)
T ss_pred CCCcccccccccCCCcCcCCCee
Confidence 22233333344444544544444
No 343
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.43 E-value=0.0014 Score=47.00 Aligned_cols=65 Identities=25% Similarity=0.560 Sum_probs=40.1
Q ss_pred cccEEEEEEEcCC-CCC-eeEEecCCccCCCCC-ceEEEEeC-CeE-EEEEcceecccceEEEEEEEeCC
Q psy12425 307 NHNAQFQCTITGC-PKP-TISWLKGSREITPSA-RHHIFAEG-DTY-TLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 307 g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~-~~~~~~~~-~~~-~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
++.+.|.|.+.|. |.. .+.|.+++....... ......++ +.+ ......+...+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999994 543 899999985332221 11222222 222 22334455567889999998754
No 344
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.43 E-value=0.055 Score=49.48 Aligned_cols=231 Identities=14% Similarity=0.181 Sum_probs=120.3
Q ss_pred ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--Ce
Q psy12425 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK--PT 323 (591)
Q Consensus 247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--~~ 323 (591)
..|+|..+...++|.|.-+..+..|... ......+... .+|.+... ...+.+|+...-.|.+..+ |. ..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~-~~~~VtV~~y-----r~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~ 269 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLV-NSTSVTVSTY-----NAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVK 269 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCcee-eeeEEEEEEe-----cCCccccc--CCccccCCCceEEEEeeeecCCCceE
Confidence 4589999999999999876655444221 1122333322 45655443 3447899999999999764 33 36
Q ss_pred eEEecCCccCCC-CC-c--eEEEEeCC---eEEEEEcceec-ccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcc
Q psy12425 324 ISWLKGSREITP-SA-R--HHIFAEGD---TYTLIINSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 395 (591)
Q Consensus 324 v~W~~~~~~~~~-~~-~--~~~~~~~~---~~~l~i~~~~~-~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~ 395 (591)
+.|+.|+.++.. .. . .....+|. ..+|++..... ...-..+|.+.-..+..+. ..+.-...|.+-.+|.+
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~-~RfsAt~~P~Vy~~P~I- 347 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSF-ARIAKAGTPSVFVAPTV- 347 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcce-eeccccccCccccCCeE-
Confidence 899999998872 22 1 12222332 12333433222 2234689997654333211 11122222333222221
Q ss_pred cceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccc-eEEE--ecCCeeEEEEec---cCCCcc-eeEEEEEEc-
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGH-FHVE--TSERHAILTIRD---ASNVDT-APYRVVAEN- 465 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~--~~~~~~~l~i~~---~~~~~~-g~y~c~a~n- 465 (591)
...+..|. ..|.+.-.|. ..+.|+.++. ...... ..+. -.+......|.+ +...|. -.|+|.+..
T Consensus 348 -s~~F~~G~---AVCtA~CVP~egV~l~W~v~D~-~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~dgp~eYTCrl~GY 422 (486)
T PHA03273 348 -SVTVEDGD---AVCTAKCVPSTGVFVSWSVNDH-LPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEENGEREYSCIIEGY 422 (486)
T ss_pred -EEEEeCCE---EEEecccccCCCeeEEEEccCC-CCCCcccccccccCCCCCCceeeeccccccccCCceeEEEEEeec
Confidence 12233343 3477776665 6899988773 211111 1111 112234444554 333331 289999874
Q ss_pred CCCccceEEEEEecCCCCCCCCCeeee
Q psy12425 466 DLGMDSAIVKIQISDRPDPPQFPTVED 492 (591)
Q Consensus 466 ~~g~~~~~~~~~v~~~p~~p~~~~~~~ 492 (591)
..+.......-.....|..+....+..
T Consensus 423 P~~lP~Fe~~~~yDASP~~~~~p~vis 449 (486)
T PHA03273 423 PDGLPMFSDTVVYDASPIVEDEPVLTS 449 (486)
T ss_pred CCCCCceeeeeeecCCCccCCCcEEEE
Confidence 233334444444455666666555543
No 345
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.42 E-value=0.00055 Score=48.73 Aligned_cols=67 Identities=4% Similarity=-0.081 Sum_probs=40.3
Q ss_pred eeeeecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe----EEEEEcccCCCCceEEEEEEEc
Q psy12425 4 ALYIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY----IIIFIKEIRKEDAGDYTVNLSN 72 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n 72 (591)
.-++..++.++|.|.+.| .| ...++|.|||+.+..+.. ......++. +.|.|..-. ..-.|+|.+.-
T Consensus 10 ~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H 83 (96)
T cd07697 10 KKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKH 83 (96)
T ss_pred HHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEE
Confidence 344556788999999999 44 558899999998754421 111122222 234333221 22349999865
No 346
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.41 E-value=0.00045 Score=50.18 Aligned_cols=69 Identities=7% Similarity=0.072 Sum_probs=41.7
Q ss_pred eeeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCce--eEEEe---CCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425 5 LYIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRF--KFTVL---DDY----IIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~--~~~~~---~~~----~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
..+..|+.++|.|.+.| .|. ..++|+|||+.+...... ..... ++. ..|.|..-.-.+...|+|.+.-.
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 34556889999999999 443 478999999987643211 11111 121 34444332223455799998654
No 347
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.40 E-value=0.00079 Score=47.08 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=42.3
Q ss_pred cCCeEEEEEEecc-CC-CceEEEEECCEEeecCCceeEEE--eCCe----EEEEEcccCCCCceEEEEEEEcCC
Q psy12425 9 EGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRFKFTV--LDDY----IIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 9 ~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~--~~~~----~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
.++.+.|.|.+.+ .| ...|.|++||..+.......... .++. +.|.+. ..+...|+|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 4899999999998 55 44899999999886553222111 2222 345555 455557999997653
No 348
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.40 E-value=0.003 Score=46.64 Aligned_cols=70 Identities=9% Similarity=0.219 Sum_probs=42.5
Q ss_pred ecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceEEEecCC-----eeEEEEeccCCCcce-eEEEEEEcCCCcc
Q psy12425 400 FDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFHVETSER-----HAILTIRDASNVDTA-PYRVVAENDLGMD 470 (591)
Q Consensus 400 ~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g-~y~c~a~n~~g~~ 470 (591)
...|+.++|.|.+.|. |. ..++|++||..+...........+. .+.|.+.. ...|.+ .|+|.+.......
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCCC
Confidence 3467889999999875 43 5899999999875432211111111 23343443 333434 5999998875433
No 349
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.40 E-value=0.00067 Score=45.94 Aligned_cols=62 Identities=29% Similarity=0.407 Sum_probs=46.7
Q ss_pred EEEEEeeeccCCCeEEEeeCCeEeeeccc----eEEEecCCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425 406 VVVKIPFTGYPKPKITWYRDNEVIESGGH----FHVETSERHAILTIRDASNVDTAPYRVVAENDL 467 (591)
Q Consensus 406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~ 467 (591)
+.|.|.+.+.+...+.|++++........ ...........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36899998888889999998876543321 111122356789999999999999999998876
No 350
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.39 E-value=0.0019 Score=45.99 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=49.2
Q ss_pred eEEEEEeeecc-CCCeEEEeeCCe----Eeee-----c--------cceEEE-ecCCeeEEEEeccCCCcceeEEEEEE-
Q psy12425 405 NVVVKIPFTGY-PKPKITWYRDNE----VIES-----G--------GHFHVE-TSERHAILTIRDASNVDTAPYRVVAE- 464 (591)
Q Consensus 405 ~~~l~c~~~~~-p~~~v~W~~~~~----~~~~-----~--------~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~a~- 464 (591)
+++|.|..... ...+|+|.+... .+.. + ++..+. ......+|.|.+++.+|.|.|.|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 57899998642 344799987421 1210 0 122221 12346899999999999999999974
Q ss_pred cCCCccceEEEEEe
Q psy12425 465 NDLGMDSAIVKIQI 478 (591)
Q Consensus 465 n~~g~~~~~~~~~v 478 (591)
...|+...+..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 56787777777765
No 351
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.39 E-value=0.0011 Score=47.16 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred ecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe-----EEEEEcccCCCCceEEEEEEEcC
Q psy12425 8 PEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-----IIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 8 ~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-----~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
..|+.++|.|.+.| .| ...++|.|||..+..+.. ..+...++. ..|.+ .+++...|+|.+.-.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence 34666899999999 45 468999999998765311 111122221 23443 345556899998654
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.31 E-value=0.002 Score=48.46 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=47.1
Q ss_pred ccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC---------------C--CCCceEEEEeC--CeEEEEEcceec
Q psy12425 301 NANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI---------------T--PSARHHIFAEG--DTYTLIINSVYG 357 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~---------------~--~~~~~~~~~~~--~~~~l~i~~~~~ 357 (591)
...+..|+.++|.|...+.. ...+.|++.. ... . ...++....+. ....|.|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 45578999999999976533 4568998732 111 0 01234444333 345799999999
Q ss_pred ccceEEEEEEEe
Q psy12425 358 VDADEYVCRAVN 369 (591)
Q Consensus 358 ~d~g~y~c~a~n 369 (591)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998764
No 353
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.30 E-value=0.0015 Score=46.46 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=42.1
Q ss_pred cccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE-EeCC----eEEEEEcceecccceEEEEEEEeCCc
Q psy12425 307 NHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF-AEGD----TYTLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 307 g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
|+.+.|+|.+ .++|.+.|.|+.++..+......... ..++ ...|.+..-..++...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 6799999976 56999999999988776211111111 1111 12466655445567789999998654
No 354
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.27 E-value=0.13 Score=47.33 Aligned_cols=232 Identities=13% Similarity=0.152 Sum_probs=117.0
Q ss_pred CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-- 321 (591)
Q Consensus 245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-- 321 (591)
....|+|..+...++|.|.-+..+..-..........+... .+|.+... ...+.+|+...-.|.+..+ |.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-----r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~S 359 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-----KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHS 359 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-----cCCCcccc--CCccccCCCceEEEEeeeecCCCc
Confidence 34568999999999999976665432111111233334433 45544433 3447899999999999764 32
Q ss_pred CeeEEecCCccCCCCCc---eEEEEeCCe---EEEEEcceeccc--ceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425 322 PTISWLKGSREITPSAR---HHIFAEGDT---YTLIINSVYGVD--ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393 (591)
Q Consensus 322 ~~v~W~~~~~~~~~~~~---~~~~~~~~~---~~l~i~~~~~~d--~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 393 (591)
..+.|+.|+..+..... .....+|.. .+|++......+ .-..+|.+.-..+..+. ..+.-...|.+-..|.
T Consensus 360 vrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~-tRfnAaatP~VY~~Pt 438 (566)
T PHA03269 360 VIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSH-MKYSAAVTPDVYPFPN 438 (566)
T ss_pred eEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchh-eecccccCCccccCCe
Confidence 36899999888875221 122233321 133332111111 23579997654332211 1112222233322222
Q ss_pred cccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccceEEE-ecCCeeEEEEec---cCCCc-ceeEEEEEEcC
Q psy12425 394 FRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGHFHVE-TSERHAILTIRD---ASNVD-TAPYRVVAEND 466 (591)
Q Consensus 394 ~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~---~~~~~-~g~y~c~a~n~ 466 (591)
+ ...+..|. ..|.+.-.|. ..+.|+.++............ -.+..+...|++ +...| --.|+|++..-
T Consensus 439 I--Sm~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GY 513 (566)
T PHA03269 439 V--SIEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGY 513 (566)
T ss_pred E--EEEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeec
Confidence 1 12233343 3477766665 479999887764332221111 112233444544 33333 25899998732
Q ss_pred -CCccceEEEEEecCCCCCCCCCe
Q psy12425 467 -LGMDSAIVKIQISDRPDPPQFPT 489 (591)
Q Consensus 467 -~g~~~~~~~~~v~~~p~~p~~~~ 489 (591)
.+.......-.....|..+....
T Consensus 514 P~~lP~Fsdt~~YDASP~a~~~Pv 537 (566)
T PHA03269 514 PKKFPPFSAVYTYDASSSASTFPL 537 (566)
T ss_pred CCCCCccceeeeecCCCcccCCce
Confidence 23333333333334444444333
No 355
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.25 E-value=0.0012 Score=42.26 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=37.8
Q ss_pred ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425 8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN 72 (591)
Q Consensus 8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n 72 (591)
...+.|.|+|... .+|.|++ |..+.... ..+|.+-....+-.|.|.|.+.+
T Consensus 4 e~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 4456899999762 4699999 55443221 34788888888999999998876
No 356
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.25 E-value=0.0031 Score=45.01 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=40.3
Q ss_pred cCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 9 EGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 9 ~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
......+.|.+ .|+|++.|+|+++.. ...........+ .+.|.+.....+|.-.|+|++.+..-.
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 34567788998 469999999999711 111111111111 246777655556666899999887533
No 357
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.21 E-value=0.006 Score=42.39 Aligned_cols=72 Identities=39% Similarity=0.647 Sum_probs=48.1
Q ss_pred cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC---CceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425 96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM---PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170 (591)
Q Consensus 96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g 170 (591)
+.+......++.++|.++..... ..|.+.+..... ..|...........+.+.+|.++..|.|+++|.+..|
T Consensus 7 ~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 7 LRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred EEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence 34444556699999997653332 445555543322 2355544444467899999999999999999997644
No 358
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.16 E-value=0.002 Score=44.96 Aligned_cols=58 Identities=19% Similarity=0.429 Sum_probs=38.3
Q ss_pred cEEEEEEEcCCCCC--eeEEecCCc--cC----------------CCCCceEEEEe--CCeEEEEEcceecccceEEEEE
Q psy12425 309 NAQFQCTITGCPKP--TISWLKGSR--EI----------------TPSARHHIFAE--GDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 309 ~~~l~c~~~~~p~~--~v~W~~~~~--~~----------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
++.|.|.+...... .+.|++... .. ....++.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788887665443 678876331 00 11234444433 5567899999999999999996
No 359
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.15 E-value=0.0024 Score=46.34 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=42.1
Q ss_pred eeccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCc-eEEEEe-CCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425 304 AIQNHNAQFQCTITG-CP-KPTISWLKGSREITPSAR-HHIFAE-GDTY----TLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 304 ~~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~~----~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
...++.++|.|.+.| +| ...|.|+++|..+..+.. .....+ ++.+ .|.+..-...+...|+|.+.+..
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 446778999999988 45 568999999988753321 111122 2322 23333333334678999998754
No 360
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.14 E-value=0.0036 Score=42.61 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=39.1
Q ss_pred EEEEEeeecc-CC-CeEEEeeCCeEeeeccce-EEEecCC-----eeEEEEeccCCCcceeEEEEEEcCC
Q psy12425 406 VVVKIPFTGY-PK-PKITWYRDNEVIESGGHF-HVETSER-----HAILTIRDASNVDTAPYRVVAENDL 467 (591)
Q Consensus 406 ~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~-~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~ 467 (591)
++|.|.+.|. |. ..+.|+++|..+..+... .....++ .+.|.|.....++...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999986 44 589999999874332111 1111111 3345555546677789999997653
No 361
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.14 E-value=0.0041 Score=44.26 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=43.3
Q ss_pred eeeecC--CeEEEEEEec-cCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 5 LYIPEG--DNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 5 ~~v~~G--~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
++|..| ..+.+.|.+. |.|++.|+|+++.. ...........+ .+.|.+.....+|.-.|+|++.+..-.
T Consensus 8 ~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~---g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 8 VEVSAGTIPVPVAKCVSANGRPPARISWSSTLG---GNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred EEeecCCCccEEEEEEcCCCCCCcEEEEEcCCC---CCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 344444 3578899876 59999999999821 111111111111 246767655556666899999987644
Q ss_pred eEE
Q psy12425 77 VSG 79 (591)
Q Consensus 77 ~~~ 79 (591)
...
T Consensus 85 ~~~ 87 (95)
T cd07703 85 EPQ 87 (95)
T ss_pred CCe
Confidence 433
No 362
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.13 E-value=0.007 Score=43.25 Aligned_cols=67 Identities=25% Similarity=0.524 Sum_probs=41.9
Q ss_pred eccccEEEEEEEcC-CCCC-eeEEecCCccCCCCC-ceEEEEeCC-eE-EEEEcceecccceEEEEEEEeCC
Q psy12425 305 IQNHNAQFQCTITG-CPKP-TISWLKGSREITPSA-RHHIFAEGD-TY-TLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 305 ~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~-~~-~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
..|..+.|.|.+.| +|.. .+.|++++..+.... ......+++ .+ ......+...+...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 45788999999988 4543 789999998876541 112222222 22 22222344556678999998754
No 363
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.13 E-value=0.0019 Score=46.21 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=24.2
Q ss_pred eeeecCCeEEEEEEeccC--C-CceEEEEECCE
Q psy12425 5 LYIPEGDNTKVKIFYAGD--Q-PMEVSLTKNGR 34 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~--p-~~~v~W~~~~~ 34 (591)
-.+..|+.++|.|.+.|. | ...|+|.|||.
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 346679999999999987 4 45889999874
No 364
>PHA02633 hypothetical protein; Provisional
Probab=97.10 E-value=0.0024 Score=39.64 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=35.6
Q ss_pred CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCC
Q psy12425 49 DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89 (591)
Q Consensus 49 ~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p 89 (591)
....|.|-++..+|+|.|.|..+|..-....++.+.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 34479999999999999999999998888888999998654
No 365
>KOG4802|consensus
Probab=97.05 E-value=0.0091 Score=53.08 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=80.6
Q ss_pred eeEEEEeccCCCcceeEEEEEEcCCCccc---eEEEEEec---CCCCCCCCCeeeeecCC---eeEEEeeccccCCCcce
Q psy12425 443 HAILTIRDASNVDTAPYRVVAENDLGMDS---AIVKIQIS---DRPDPPQFPTVEDIGHD---SLALVWRAPIWDGGSNI 513 (591)
Q Consensus 443 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~~---~~~~~~v~---~~p~~p~~~~~~~~~~~---~v~l~W~~p~~~~~~~~ 513 (591)
...+...++.+.--|.|++.|.|..|.-. -+-.+... .+|.+|.++.+..+..+ ...|.|.|+. ..-++
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~--sdlPv 285 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK--SDLPV 285 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC--CCCcc
Confidence 34777888999999999999999887542 22222222 24566777776554322 2566787764 44689
Q ss_pred eeEEEEeeeCCCC---ceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425 514 TNYIVEKREHPMS---SWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567 (591)
Q Consensus 514 ~~y~v~~~~~~~~---~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~ 567 (591)
..|.|.|...... ..... ..-....+.|.+|.|+..|.+.|+|..-.|.++.-.
T Consensus 286 ~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rLks 344 (516)
T KOG4802|consen 286 EKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRLKS 344 (516)
T ss_pred eeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccccc
Confidence 9999998754311 00000 011112444999999999999999999999876443
No 366
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.99 E-value=0.0044 Score=45.77 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=59.5
Q ss_pred CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe---ceeeeeEEEEcCcc--cCceEEEEE
Q psy12425 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTTMAITGLS--PGHQYEFRV 554 (591)
Q Consensus 480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~l~--~~~~Y~~~v 554 (591)
....+|.++++... .....|+|+++. +...-..|.|+++......|..+ .+...+...+++.. ....|.+||
T Consensus 20 ~~lp~P~nv~~~s~-nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 20 ASLPAPQNVTVDSV-NFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSGSSCEEEEEEEE-TTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred ccCCCCCeeEEEEE-CCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 34467788888764 567899999743 23356899999997778899887 45566788887754 688999999
Q ss_pred EEEcCCcC
Q psy12425 555 YAENVYGR 562 (591)
Q Consensus 555 ~A~n~~G~ 562 (591)
+|.-....
T Consensus 97 ~A~~~~~~ 104 (107)
T PF01108_consen 97 RAEVGNQT 104 (107)
T ss_dssp EEEETTEE
T ss_pred EEEeCCcc
Confidence 99665443
No 367
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.98 E-value=0.0012 Score=49.13 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=46.1
Q ss_pred cCCeEEEEEEecc-----CCCceEEEEECCEEeecCCc--eeEE-----------EeCCeEEEEEcccCCCCceEEEEEE
Q psy12425 9 EGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDR--FKFT-----------VLDDYIIIFIKEIRKEDAGDYTVNL 70 (591)
Q Consensus 9 ~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~--~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~c~~ 70 (591)
=+++|.|.|.+.. .+...|.|.++|+.+-.-+. .+.. ...+..+|.+...+.- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 3689999999964 13457999999987632211 1110 0112245777765444 89999999
Q ss_pred EcCCeeeEEEEEEEEe
Q psy12425 71 SNSSGSVSGTFTINIT 86 (591)
Q Consensus 71 ~n~~g~~~~~~~l~v~ 86 (591)
.......+..+.|...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9888877777777764
No 368
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.95 E-value=0.0044 Score=43.56 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=42.3
Q ss_pred eecCCeEEEEEEecc-CCC--ceEEEEECCEEeecCCcee-E---EEeCCeEEEEEcccCCCCce-EEEEEEEcC
Q psy12425 7 IPEGDNTKVKIFYAG-DQP--MEVSLTKNGRVVQSDDRFK-F---TVLDDYIIIFIKEIRKEDAG-DYTVNLSNS 73 (591)
Q Consensus 7 v~~G~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~ 73 (591)
+.+|..+++.|.+.+ .|. ..+.|+|+...+....-.. + ........+++.- +++|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 579999999999976 554 7899999877665432111 0 0011223455554 366666 999998643
No 369
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.92 E-value=0.013 Score=41.58 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=41.8
Q ss_pred eccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCceEEEEeCC-eE-EEEEcceecccceEEEEEEEeC
Q psy12425 305 IQNHNAQFQCTITG-CP-KPTISWLKGSREITPSARHHIFAEGD-TY-TLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 305 ~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~-~~-~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
..|....|.|.+.| +| ...+.|.+||..+.......+..+++ .+ ......+.+.+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 45666799999998 34 45789999998876222222222222 22 2222345567778899999874
No 370
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.90 E-value=0.016 Score=41.26 Aligned_cols=65 Identities=14% Similarity=0.317 Sum_probs=39.9
Q ss_pred ccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCce-EEEEe-CCeEE-EEEcceecccceEEEEEEEeC
Q psy12425 306 QNHNAQFQCTITG-CP-KPTISWLKGSREITPSARH-HIFAE-GDTYT-LIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 306 ~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~~-~~~~~-~~~~~-l~i~~~~~~d~g~y~c~a~n~ 370 (591)
.++..+|.|.+.| +| ...+.|.++|..+..+... ....+ ++.+. .....+.+.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 4566899999998 44 3578999999887543221 12222 22221 122234456667899999775
No 371
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.87 E-value=0.0026 Score=40.46 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=36.0
Q ss_pred cCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466 (591)
Q Consensus 401 ~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~ 466 (591)
..|..|+|+|...+.. +.|.+++..+.. ....+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~~---i~W~~n~~~~~g----------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGDD---IKWKKNDQVSQG----------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCCC---ceEEeCCccCCC----------CCceEEeeccC-CCCceEEEEeCCC
Confidence 4689999999765332 999999855432 22344444555 8899999999643
No 372
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.83 E-value=0.013 Score=41.79 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=45.2
Q ss_pred eEEEEEeeec-cCCCeEEEeeCCe----Eeee-----c--------cceEEEe-cCCeeEEEEeccCCCcceeEEEEEEc
Q psy12425 405 NVVVKIPFTG-YPKPKITWYRDNE----VIES-----G--------GHFHVET-SERHAILTIRDASNVDTAPYRVVAEN 465 (591)
Q Consensus 405 ~~~l~c~~~~-~p~~~v~W~~~~~----~~~~-----~--------~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~a~n 465 (591)
.++|.|.... ....+|+|.+... .+.. + ++..+.. .....+|.|.+++.+|.|.|.|...+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 5788888753 2455788987432 1110 0 1222211 12468999999999999999999976
Q ss_pred C-CCccceEEEE
Q psy12425 466 D-LGMDSAIVKI 476 (591)
Q Consensus 466 ~-~g~~~~~~~~ 476 (591)
- .|.....+.+
T Consensus 82 ~P~g~~~~~i~~ 93 (96)
T cd05889 82 YPQGSWEKVIEV 93 (96)
T ss_pred CCCCCeEEEEEE
Confidence 5 5655555444
No 373
>PHA02982 hypothetical protein; Provisional
Probab=96.80 E-value=0.019 Score=45.94 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=76.8
Q ss_pred ccceeccccEEEEEEEcC-CCCCeeEEecCCccC-----------C--------CCCceEEEEeCCeEEEEEcceecccc
Q psy12425 301 NANAIQNHNAQFQCTITG-CPKPTISWLKGSREI-----------T--------PSARHHIFAEGDTYTLIINSVYGVDA 360 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~-----------~--------~~~~~~~~~~~~~~~l~i~~~~~~d~ 360 (591)
++....++.|.|.|.... ..-.+..|..+.... . ....+.+..++...+|+|..+..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 445667899999999643 333467887743211 1 12346677888889999999999999
Q ss_pred eEEEEEEEeCCcceee-eeEEEEecCCcccCCCCcccceee-cCCCeEEEEEeeeccCCCeEEEeeCCeE
Q psy12425 361 DEYVCRAVNKGGVKST-KAELIIMTAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEV 428 (591)
Q Consensus 361 g~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~-~~g~~~~l~c~~~~~p~~~v~W~~~~~~ 428 (591)
|.|+|.|....+.... ...+.|+..-.. ... .....-.+.|-+-+.-.+...|..+|..
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~---------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDIL---------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEE---------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999987765543 555666321110 011 2344557889886654443488887753
No 374
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.79 E-value=0.02 Score=40.96 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=40.0
Q ss_pred ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE--EeCC---eEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF--AEGD---TYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
....+.|.+ .|+|.+.|.|+++... ....... .++. ...|.+.....++...|+|++.+..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 457789998 6799999999987211 1111111 1221 2256666556666678999999875433
No 375
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.76 E-value=0.01 Score=42.27 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=40.6
Q ss_pred ccccEEEEEEEcC-CCC-CeeEEecCCccCCCCCc-e-EEEEeCCeE----EEEEcceecccceEEEEEEEeCCc
Q psy12425 306 QNHNAQFQCTITG-CPK-PTISWLKGSREITPSAR-H-HIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 306 ~g~~~~l~c~~~~-~p~-~~v~W~~~~~~~~~~~~-~-~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
....+.|.|.+.| +|. ..|.|.++|..+..... . ....+++.+ .|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 4566899999988 454 67899999887643221 1 112233333 233332223356789999987643
No 376
>PHA02982 hypothetical protein; Provisional
Probab=96.75 E-value=0.0045 Score=49.33 Aligned_cols=74 Identities=11% Similarity=0.248 Sum_probs=55.5
Q ss_pred eeeeecCCeEEEEEEecc-CCCceEEEEECC-EEee----------c--------CCceeEEEeCCeEEEEEcccCCCCc
Q psy12425 4 ALYIPEGDNTKVKIFYAG-DQPMEVSLTKNG-RVVQ----------S--------DDRFKFTVLDDYIIIFIKEIRKEDA 63 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~ 63 (591)
++....|+.|.|.|.... ..-.+..|+++. .-+. . .+.++.+..++.++|+|.++.++..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 455678999999999743 445578998753 2221 1 2456677888889999999999999
Q ss_pred eEEEEEEEcCCeee
Q psy12425 64 GDYTVNLSNSSGSV 77 (591)
Q Consensus 64 g~Y~c~~~n~~g~~ 77 (591)
|-|+|.+....+..
T Consensus 113 GCYtc~~ks~~~k~ 126 (251)
T PHA02982 113 GCFTCEAKDAEGKE 126 (251)
T ss_pred CceEEEEecCCCch
Confidence 99999998765544
No 377
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.73 E-value=0.01 Score=41.93 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=47.9
Q ss_pred ceeeeecCCeEEEEEEeccCCCceEEEEE---------------CCEEeecC--CceeEEEeCCeEEEEEcccCCCCceE
Q psy12425 3 NALYIPEGDNTKVKIFYAGDQPMEVSLTK---------------NGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGD 65 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---------------~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~ 65 (591)
+.+....|+++.|.=.-.-..--.+.|.+ |+...... ..-++........|.|+.+++.|+|.
T Consensus 6 ~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~ 85 (108)
T PF11465_consen 6 DHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGL 85 (108)
T ss_dssp EEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EE
T ss_pred cceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCce
Confidence 45667778888886221111123455643 22222211 11234444455689999999999999
Q ss_pred EEEEEEcCCeee-EEEEEEEEe
Q psy12425 66 YTVNLSNSSGSV-SGTFTINIT 86 (591)
Q Consensus 66 Y~c~~~n~~g~~-~~~~~l~v~ 86 (591)
|...+.+..|.. ...+.|.|.
T Consensus 86 Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 86 YCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEEEEee
Confidence 999999999887 444666664
No 378
>KOG4258|consensus
Probab=96.67 E-value=0.042 Score=54.28 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=50.9
Q ss_pred cCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe--eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCc
Q psy12425 202 GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV--AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279 (591)
Q Consensus 202 ~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~ 279 (591)
..+.+-|+|..|..+++ .+..|.|.++..+...-...-. .........+..+.++ .|..+++|..-.|.+.+....
T Consensus 841 ~~~~v~l~w~EP~~pNG-li~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~ 918 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNG-LILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESV 918 (1025)
T ss_pred CcceEEEecCCCCCCCc-cEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCc
Confidence 56789999999987765 7889999999766543222110 1112345566666655 477788888888888765443
Q ss_pred c
Q psy12425 280 N 280 (591)
Q Consensus 280 ~ 280 (591)
.
T Consensus 919 ~ 919 (1025)
T KOG4258|consen 919 I 919 (1025)
T ss_pred c
Confidence 3
No 379
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.57 E-value=0.019 Score=40.86 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=40.1
Q ss_pred ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCcce
Q psy12425 308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~ 374 (591)
..+.+.|.+ .|.|.+.|.|+++...... .......++. ...|.+.....++...|+|++.+..-..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 457889987 4799999999987221110 0111112222 2256666556666778999999875443
No 380
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.54 E-value=0.5 Score=41.66 Aligned_cols=118 Identities=24% Similarity=0.351 Sum_probs=72.4
Q ss_pred CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE-ec------CCCCCCCCCeeeee----cCCeeEEEeeccccCCC
Q psy12425 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ-IS------DRPDPPQFPTVEDI----GHDSLALVWRAPIWDGG 510 (591)
Q Consensus 442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~-v~------~~p~~p~~~~~~~~----~~~~v~l~W~~p~~~~~ 510 (591)
.-..+.+.++.+.+.|..+..+.|.... ...+.+. +. .-|.-|.++.+... +-++++|.|.+.. +.
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~-d~- 202 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSP-DR- 202 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCC-CC-
Confidence 5677889999988888777776765433 3334444 22 23677888877543 4589999999643 21
Q ss_pred cceeeEEEEeeeCCCC----------------------ceEEe----c-------eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425 511 SNITNYIVEKREHPMS----------------------SWIRV----G-------NTRFTTMAITGLSPGHQYEFRVYAE 557 (591)
Q Consensus 511 ~~~~~y~v~~~~~~~~----------------------~~~~~----~-------~~~~~~~~i~~l~~~~~Y~~~v~A~ 557 (591)
.+ .|=|+.+..... .|... . .......+|.+|.||+.|.|-|.|.
T Consensus 203 -~~-kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 203 -SI-KYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred -Cc-eEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence 13 344443322111 11111 0 1122466899999999999999997
Q ss_pred cCCcCCC
Q psy12425 558 NVYGRSD 564 (591)
Q Consensus 558 n~~G~~~ 564 (591)
-..|.+-
T Consensus 281 ~~~G~sl 287 (300)
T PF10179_consen 281 GPSGQSL 287 (300)
T ss_pred cCCCcee
Confidence 6666543
No 381
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.49 E-value=0.027 Score=39.33 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=42.0
Q ss_pred CCCeEEEEEeeecc-CCC-eEEEeeCCeEeeeccceEEEe--cCC----eeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425 402 KGENVVVKIPFTGY-PKP-KITWYRDNEVIESGGHFHVET--SER----HAILTIRDASNVDTAPYRVVAENDLG 468 (591)
Q Consensus 402 ~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~--~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g 468 (591)
.+..+.|.|.+.+. |.. .|.|+++|..+.......... .+. .+.|.+. ..+...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999885 433 799999998875433222111 122 2344444 5566689999987644
No 382
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.45 E-value=0.023 Score=42.16 Aligned_cols=71 Identities=23% Similarity=0.456 Sum_probs=42.6
Q ss_pred eeccccEEEEEEEcC-CCC-CeeEEecCCccCCCCCce--EEEEeC-CeE----EEEEcceeccc-ceEEEEEEEeCCcc
Q psy12425 304 AIQNHNAQFQCTITG-CPK-PTISWLKGSREITPSARH--HIFAEG-DTY----TLIINSVYGVD-ADEYVCRAVNKGGV 373 (591)
Q Consensus 304 ~~~g~~~~l~c~~~~-~p~-~~v~W~~~~~~~~~~~~~--~~~~~~-~~~----~l~i~~~~~~d-~g~y~c~a~n~~g~ 373 (591)
...+..+.|.|.+.+ +|. ..|.|.+++..+..+... ....++ +.+ .|.+..-...+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 445678999999988 454 488999999877643221 111221 233 33333333223 46799999876443
Q ss_pred e
Q psy12425 374 K 374 (591)
Q Consensus 374 ~ 374 (591)
.
T Consensus 95 ~ 95 (115)
T cd05769 95 D 95 (115)
T ss_pred c
Confidence 3
No 383
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=96.44 E-value=0.17 Score=35.26 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=52.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|+.+.|..|+++.+.|...-..+..+.|.-.= .+..+.....-..+.|.+++. | ..-.|.+.-.......+.
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~ 81 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASA 81 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEE
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEE
Confidence 78899999999999999864333344553210 112222233456888999987 4 467899987655567789
Q ss_pred EEEEecCCC
Q psy12425 82 TINITGLPG 90 (591)
Q Consensus 82 ~l~v~~~p~ 90 (591)
.|+|...|+
T Consensus 82 ~ItVY~~Pe 90 (91)
T PF03921_consen 82 NITVYKPPE 90 (91)
T ss_dssp EEEEEB--S
T ss_pred eeEEeCCCC
Confidence 999988774
No 384
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.43 E-value=0.011 Score=37.93 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=35.5
Q ss_pred cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369 (591)
Q Consensus 307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n 369 (591)
.+.|.|.|... ..|.|++ |..+.... ..+|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 35689999652 4699999 44433211 22688888889999999999876
No 385
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.41 E-value=0.013 Score=42.66 Aligned_cols=68 Identities=16% Similarity=0.381 Sum_probs=39.8
Q ss_pred eeccccEEEEEEEcCC-CC-CeeEEecCCccCCCCCceE--EEEe---CCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425 304 AIQNHNAQFQCTITGC-PK-PTISWLKGSREITPSARHH--IFAE---GDTY----TLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 304 ~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~--~~~~---~~~~----~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
+..+..++|.|.+.|. |. ..+.|.+++..+....... ...+ ++.+ .|.+..-...+...|+|.+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 3456789999999984 43 3679999998765432111 1111 1222 23332222234567999997753
No 386
>KOG4367|consensus
Probab=96.34 E-value=0.0049 Score=54.83 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=63.5
Q ss_pred ecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCcc
Q psy12425 101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178 (591)
Q Consensus 101 ~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~ 178 (591)
...+++++.|..|. ..+.+..+|.++..+..+..+..+.. ...+..++.+|..+..|.-||.+.|..|.++.+...
T Consensus 450 t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~-g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 450 THNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV-GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred ccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEe-cCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence 46789999999766 45678889999999987777776654 477889999999999999999999999998877654
No 387
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.27 E-value=0.021 Score=40.92 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=38.2
Q ss_pred cceeccccEEEEEEEcCC--C-CCeeEEecCCccCCC-CCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425 302 ANAIQNHNAQFQCTITGC--P-KPTISWLKGSREITP-SARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 302 ~~~~~g~~~~l~c~~~~~--p-~~~v~W~~~~~~~~~-~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
..+..++.+.|.|.+.|. | ...+.|.+++..... .........++.+ .|.+..-...+.-.|+|.+.+..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 335568899999999988 3 346899998643211 1111111112222 22233222223456999998754
No 388
>KOG4152|consensus
Probab=96.22 E-value=1.1 Score=42.03 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=77.2
Q ss_pred EeccCCCcceeEEEEEEcCCCccceEEEEEe----cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC
Q psy12425 448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQI----SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523 (591)
Q Consensus 448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v----~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~ 523 (591)
-.++-...+|+|.+.|.|..|....+..+.. -..|.+|+..+++. +-..+.|.|++|...+...|+.|..+..-.
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ylAi~ 729 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYLAII 729 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhhHhh
Confidence 3456678899999999999988744333322 24567777766653 567899999999877777888888775321
Q ss_pred C--------CCceEEecee---------eeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425 524 P--------MSSWIRVGNT---------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567 (591)
Q Consensus 524 ~--------~~~~~~~~~~---------~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~ 567 (591)
. +..+.+..-+ .....-+.+...+-...|||.|.|+.|.|+...
T Consensus 730 tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatq 790 (830)
T KOG4152|consen 730 TQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQ 790 (830)
T ss_pred hhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceE
Confidence 1 1122222100 111112234555778999999999999987654
No 389
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.19 E-value=0.04 Score=39.14 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=44.8
Q ss_pred eeeeecCCeEEE-EEEe-ccCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCC
Q psy12425 4 ALYIPEGDNTKV-KIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSS 74 (591)
Q Consensus 4 ~~~v~~G~~~~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~ 74 (591)
.+.+.+|+.+.+ .|.+ .|.|++.|+|+.+...... .......+ .+.|.+.....+|.-.+.|.+....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 467889999999 8987 5599999999987332211 11111111 2466676666667779999997653
No 390
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.13 E-value=0.055 Score=39.54 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=43.2
Q ss_pred cceeccccEEEEEEEcCCCC---CeeEEecCCccC---------------CCCCceEEE--EeCCeEEEEEcceecccce
Q psy12425 302 ANAIQNHNAQFQCTITGCPK---PTISWLKGSREI---------------TPSARHHIF--AEGDTYTLIINSVYGVDAD 361 (591)
Q Consensus 302 ~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~---------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g 361 (591)
..+..|..++|+|++.|... ..+.|.|..... ....+.... ...+..+|.+.+++.+|++
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 34567788999999976433 457787732211 011122222 3334568999999999999
Q ss_pred EEEEEE
Q psy12425 362 EYVCRA 367 (591)
Q Consensus 362 ~y~c~a 367 (591)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999986
No 391
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.12 E-value=0.038 Score=39.51 Aligned_cols=64 Identities=6% Similarity=0.129 Sum_probs=37.1
Q ss_pred cCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-e-eEEEeCCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425 9 EGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-F-KFTVLDDY----IIIFIKEIRKEDAGDYTVNLSNS 73 (591)
Q Consensus 9 ~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~-~~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n~ 73 (591)
.++.++|.|.+.| .| ...|+|.|||+. ..+.. . .+...++. +.|.+..-.-...-.|+|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 4678999999999 44 468899999997 33211 1 11111222 23444332211244699998754
No 392
>KOG1480|consensus
Probab=96.11 E-value=0.0038 Score=60.35 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=95.8
Q ss_pred CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeC----CeE---EEEEcceecccc---
Q psy12425 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG----DTY---TLIINSVYGVDA--- 360 (591)
Q Consensus 291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~---~l~i~~~~~~d~--- 360 (591)
..|.++..+.+..+..+..+.|.|.+...+.. ...-++.-+.......+.... ..+ ...|....-++.
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i--~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~ 100 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQI--RFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP 100 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCccccc--ccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence 34667777788888999999999998655443 222222212222211111111 111 122222222221
Q ss_pred eEEE--EEEEeCCcceeee-eEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceE
Q psy12425 361 DEYV--CRAVNKGGVKSTK-AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFH 436 (591)
Q Consensus 361 g~y~--c~a~n~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~ 436 (591)
-.|+ |.|....|..... ..+.+.+-...... -.....+..+..+.+.|.. .+.|...+.|++++..+.+.....
T Consensus 101 ~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~--~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~ 178 (909)
T KOG1480|consen 101 EDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQ--SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVI 178 (909)
T ss_pred cceeeeeeeecCCCcchhhhHHHHHHHHHHhhcc--ChhhheecccccccccccCcccchhhhhhccccCCCCCccccch
Confidence 1355 5566666622111 11111110000000 0012335667778888876 688999999999998887744333
Q ss_pred EEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425 437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470 (591)
Q Consensus 437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~ 470 (591)
.. ....+++..+...|.|+|+|+|.|-++..
T Consensus 179 ~~---~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 179 RA---SDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hh---hcCCccccchhhhhcccceeeeehhhccc
Confidence 32 35678888999999999999999988765
No 393
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.98 E-value=0.017 Score=41.29 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.8
Q ss_pred eecCCeEEEEEEecc-C-C-CceEEEEECCEE
Q psy12425 7 IPEGDNTKVKIFYAG-D-Q-PMEVSLTKNGRV 35 (591)
Q Consensus 7 v~~G~~~~l~C~~~~-~-p-~~~v~W~~~~~~ 35 (591)
+..++.++|.|.+.| . | ...|.|.++|..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 447889999999998 4 4 468999999875
No 394
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.88 E-value=0.061 Score=38.41 Aligned_cols=66 Identities=12% Similarity=0.268 Sum_probs=38.9
Q ss_pred eccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCc-eEEEEeCCeEEE-EEcceeccc-ceEEEEEEEeC
Q psy12425 305 IQNHNAQFQCTITG-CP-KPTISWLKGSREITPSAR-HHIFAEGDTYTL-IINSVYGVD-ADEYVCRAVNK 370 (591)
Q Consensus 305 ~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l-~i~~~~~~d-~g~y~c~a~n~ 370 (591)
..+..+.|.|.+.| +| ...+.|.++|..+..+.. .....+++.+.+ .-..+.+.+ ...|+|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence 34567899999988 44 346899999987654322 122233333321 112333432 33499999874
No 395
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.87 E-value=0.017 Score=42.69 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=52.5
Q ss_pred CCCCCeeeeecCCeeEEEeeccccC---CCc--------ceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEE
Q psy12425 484 PPQFPTVEDIGHDSLALVWRAPIWD---GGS--------NITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEF 552 (591)
Q Consensus 484 ~p~~~~~~~~~~~~v~l~W~~p~~~---~~~--------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~ 552 (591)
||. +.+ ....+.+.+.+.+|... ++. .-..|.|.+.......-..........+.|.+|.|++.|=+
T Consensus 5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv 82 (106)
T PF09294_consen 5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCV 82 (106)
T ss_dssp SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEE
T ss_pred CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEE
Confidence 444 555 45788999999987510 111 12469999887776633344445556789999999999999
Q ss_pred EEEEEcCC--cCCCCCCCc
Q psy12425 553 RVYAENVY--GRSDPSTTS 569 (591)
Q Consensus 553 ~v~A~n~~--G~~~~s~~~ 569 (591)
+|+|.... -.|.+|.+.
T Consensus 83 ~V~~~~~~~~~~s~~S~~~ 101 (106)
T PF09294_consen 83 SVQAFSPSQNKNSQPSEPQ 101 (106)
T ss_dssp EEEEEECSSTEEEEEBSEE
T ss_pred EEEEEeccCCCcCCCCCCE
Confidence 99993222 235555543
No 396
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.86 E-value=0.12 Score=36.99 Aligned_cols=65 Identities=22% Similarity=0.468 Sum_probs=37.8
Q ss_pred ccccEEEEEEEcCC-C-CCeeEEecCCccCCCCCc-e-EEEEeCCeEE-EEEcceeccc---ceEEEEEEEeCC
Q psy12425 306 QNHNAQFQCTITGC-P-KPTISWLKGSREITPSAR-H-HIFAEGDTYT-LIINSVYGVD---ADEYVCRAVNKG 371 (591)
Q Consensus 306 ~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~-~-~~~~~~~~~~-l~i~~~~~~d---~g~y~c~a~n~~ 371 (591)
.++.+.|.|.+.|. | ...+.|.++|.. ..+.. . .+..+++.+. .....+.+.+ .-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45678999999984 3 357899999887 33211 1 1222133332 1112344443 567999998754
No 397
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.80 E-value=0.08 Score=37.40 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=41.1
Q ss_pred ecCCCeEEEEEeeec-cCC--CeEEEeeCCeEeeeccceEE----EecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425 400 FDKGENVVVKIPFTG-YPK--PKITWYRDNEVIESGGHFHV----ETSERHAILTIRDASNVDTAPYRVVAEND 466 (591)
Q Consensus 400 ~~~g~~~~l~c~~~~-~p~--~~v~W~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~a~n~ 466 (591)
+..|..++++|.+.+ .|. ..+.|+++...+.......- ........+++.--..++.-.|+|.|.=.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEe
Confidence 467999999999975 444 47999987665543321110 01112345666554444445999999743
No 398
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.78 E-value=0.043 Score=39.26 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=38.7
Q ss_pred cceeccccEEEEEEEcCCC---CCeeEEecCCccCCCCCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCCc
Q psy12425 302 ANAIQNHNAQFQCTITGCP---KPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGG 372 (591)
Q Consensus 302 ~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g 372 (591)
.....+..++|.|.+.+.- ...|.|.+++.. ...........++.+ .|.+..-.......|+|.+.+...
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3344678899999998843 357999998765 111111111112222 233332222333569999987543
No 399
>PHA03052 Hypothetical protein; Provisional
Probab=95.76 E-value=0.059 Score=34.18 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCceeeeecCCeEEEEEEec-c--CCCceEEEEECCEEe
Q psy12425 1 MPNALYIPEGDNTKVKIFYA-G--DQPMEVSLTKNGRVV 36 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~-~--~p~~~v~W~~~~~~~ 36 (591)
+|+.+.+..|.+++|.|++. | ...+.|.|.-|+..+
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 58899999999999999983 2 335689999999888
No 400
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.68 E-value=0.11 Score=37.01 Aligned_cols=68 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred ceeccccEEE-EEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCC
Q psy12425 303 NAIQNHNAQF-QCTI-TGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKG 371 (591)
Q Consensus 303 ~~~~g~~~~l-~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~ 371 (591)
.+.+|+.+.+ .|.+ .|.|.+.|.|+.+...... .......+|. ..+|.+......+.-.++|.+.+..
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 3567888888 8987 6799999999976333211 0001111121 1245665566667778999998764
No 401
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.50 E-value=1.8 Score=39.09 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=74.6
Q ss_pred ccceeccccEEEEEEEcC---CCCCeeEEecCCccCC-----------------CCCceEEEEe------CCeEEEEEcc
Q psy12425 301 NANAIQNHNAQFQCTITG---CPKPTISWLKGSREIT-----------------PSARHHIFAE------GDTYTLIINS 354 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~---~p~~~v~W~~~~~~~~-----------------~~~~~~~~~~------~~~~~l~i~~ 354 (591)
.+.+..|..+.|.|...- ..-....|...+-++. ....+.+... -...+|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 444566999999999754 2234578876544332 1122333322 1244899999
Q ss_pred eecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecC-CCeEEEEEeeecc--CCCeEEEeeCCeEe
Q psy12425 355 VYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK-GENVVVKIPFTGY--PKPKITWYRDNEVI 429 (591)
Q Consensus 355 ~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~-g~~~~l~c~~~~~--p~~~v~W~~~~~~~ 429 (591)
+.-+..|.|+|.|....-......-|.|.+.-.+ ....+ .....+.|-+-.. .++.+.|..+|...
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f---------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFF---------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccEEEE---------EEEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 9999999999999887555555566666432110 00112 3455788988654 45579999988654
No 402
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.44 E-value=0.99 Score=41.32 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=60.6
Q ss_pred eEEEEEcceecccceEEEEEEEeCCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEE
Q psy12425 347 TYTLIINSVYGVDADEYVCRAVNKGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KIT 421 (591)
Q Consensus 347 ~~~l~i~~~~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~ 421 (591)
...|.|..++..++|.|+=+..+..+.. ...+.+....+|.+.+.+. -+..|+...-.|.+..+-++ .+.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~Y~AtC~va~YYPp~Sv~lr 255 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-----AVLEGEPFGATCVAANYYPGDRAAFR 255 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence 4579999999999999999977766644 4456666667777665443 24679999999999776544 799
Q ss_pred EeeCCeEee
Q psy12425 422 WYRDNEVIE 430 (591)
Q Consensus 422 W~~~~~~~~ 430 (591)
|+.|+..+.
T Consensus 256 Wf~ng~~V~ 264 (466)
T PHA03270 256 WFEGGDEVF 264 (466)
T ss_pred EEeCCcccc
Confidence 999999885
No 403
>KOG4597|consensus
Probab=95.35 E-value=0.022 Score=51.84 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=63.7
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEE---CCEEeecCCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK---NGRVVQSDDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~ 76 (591)
|..-.|..|++.+++|-+.|.+.+.|.|.+ |+..+..... +.-........|.|-+....|+|.|+|.+.+..|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 445568899999999999999999999965 3433322211 11001123468999999999999999999999999
Q ss_pred eEEEEEEEEec
Q psy12425 77 VSGTFTINITG 87 (591)
Q Consensus 77 ~~~~~~l~v~~ 87 (591)
....+.+.+..
T Consensus 283 ~~rdv~c~s~~ 293 (560)
T KOG4597|consen 283 LRRDVPCSSVK 293 (560)
T ss_pred eeccceeeeec
Confidence 98888777654
No 404
>PHA02633 hypothetical protein; Provisional
Probab=95.13 E-value=0.081 Score=33.16 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=32.0
Q ss_pred EEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCc
Q psy12425 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387 (591)
Q Consensus 349 ~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 387 (591)
.|-|.++...|+|.|.|...|..-....+..+.|.....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence 588899999999999999998777777777777765443
No 405
>PHA03042 CD47-like protein; Provisional
Probab=95.04 E-value=0.14 Score=43.32 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=47.0
Q ss_pred CCeEEEEEEeccC-----CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 10 GDNTKVKIFYAGD-----QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 10 G~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
.+++.+.|.+..- ....+.|..+++.+...++. +..+|.+... .+-.|+|+|.|.+........+++.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 6889999999642 35679999999987554332 2246666433 3458999999987765555555544
Q ss_pred Ee
Q psy12425 85 IT 86 (591)
Q Consensus 85 v~ 86 (591)
-.
T Consensus 104 ~~ 105 (286)
T PHA03042 104 YV 105 (286)
T ss_pred EE
Confidence 43
No 406
>KOG1480|consensus
Probab=95.04 E-value=0.01 Score=57.52 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=60.1
Q ss_pred eeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEE
Q psy12425 4 ALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF 81 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~ 81 (591)
--.|.++..+.+.|+. .+.|...+.|+|++..+....+..... -+.+.|..+...|.|+|+|.|.|..+.. ...+
T Consensus 138 ~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~ 214 (909)
T KOG1480|consen 138 GQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKSDPA 214 (909)
T ss_pred hheecccccccccccCcccchhhhhhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhccccccce
Confidence 3468889999999986 668999999999998887743333222 2368899999999999999999987765 2334
Q ss_pred EEEEe
Q psy12425 82 TINIT 86 (591)
Q Consensus 82 ~l~v~ 86 (591)
.+.+.
T Consensus 215 ~v~vy 219 (909)
T KOG1480|consen 215 TVQVY 219 (909)
T ss_pred EEEEE
Confidence 44443
No 407
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.60 E-value=0.24 Score=34.69 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=47.0
Q ss_pred CceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
|....|..|.+|+..|.+.. .....+.|..|+..++.+ +++.. .+..+.++|.++....+-.|-|...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVI-NDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-Hccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence 67788999999999999953 246689999999966555 33332 3334788899888877777888743
No 408
>PHA03271 envelope glycoprotein C; Provisional
Probab=94.44 E-value=3.9 Score=37.43 Aligned_cols=129 Identities=10% Similarity=0.074 Sum_probs=74.0
Q ss_pred CCCceEEEEeC--CeEEEEEcceecccceEEEEEEEeCCcce--eeeeEEEEec-CCcccCCCCcccceeecCCCeEEEE
Q psy12425 335 PSARHHIFAEG--DTYTLIINSVYGVDADEYVCRAVNKGGVK--STKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVK 409 (591)
Q Consensus 335 ~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~ 409 (591)
.+++|.+-.+. ....+.|.++...++|.|+....+..... .....+.+.+ +|.+...+. -+..|+...-.
T Consensus 192 ~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-----PVL~Ge~YkAt 266 (490)
T PHA03271 192 HGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-----PVLSGENYKAS 266 (490)
T ss_pred CCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-----ccccCCCceEE
Confidence 34455443332 23478999999999998866665544433 3344444444 443443332 24679999999
Q ss_pred EeeeccCCC---eEEEeeCCeEeeeccceEEEe---cC-----CeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425 410 IPFTGYPKP---KITWYRDNEVIESGGHFHVET---SE-----RHAILTIRDASNVDTAPYRVVAENDLG 468 (591)
Q Consensus 410 c~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~---~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g 468 (591)
|.+..+-+| .+.|++||............. .+ ..+.+++.+...+..=..+|.+.=..+
T Consensus 267 C~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 267 CIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred EEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 999876554 699999998775432211111 11 123333333322233378999864444
No 409
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.35 E-value=0.19 Score=37.74 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred cCCCeEEEEEeeecc-----CCCeEEEeeCCeEeeecc--ceE----------E-EecCCeeEEEEeccCCCcceeEEEE
Q psy12425 401 DKGENVVVKIPFTGY-----PKPKITWYRDNEVIESGG--HFH----------V-ETSERHAILTIRDASNVDTAPYRVV 462 (591)
Q Consensus 401 ~~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~--~~~----------~-~~~~~~~~l~i~~~~~~~~g~y~c~ 462 (591)
.=.+++.|.|.+... +.-.|.|.++|..+-.-+ ... + ....+..+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 447889999998642 234699999887663211 111 1 01123455777764443 7999999
Q ss_pred EEcCCCccceEEEEEec
Q psy12425 463 AENDLGMDSAIVKIQIS 479 (591)
Q Consensus 463 a~n~~g~~~~~~~~~v~ 479 (591)
+..........+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99887777777777663
No 410
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.32 E-value=1.1 Score=30.66 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=39.8
Q ss_pred EEEEEEeccCC-------CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEE-EcCCeeeEEEEEEE
Q psy12425 13 TKVKIFYAGDQ-------PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL-SNSSGSVSGTFTIN 84 (591)
Q Consensus 13 ~~l~C~~~~~p-------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~-~n~~g~~~~~~~l~ 84 (591)
-.|.|...+-- .+.+.|+-.+..+..... .+....+...|+|.+.|.| .+..-.....+.|.
T Consensus 8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEEESECEEETTTECEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred CEeeeeeEEEEEcCCCCCChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 45667664422 456777766554433322 4456677889999999999 55555555656665
Q ss_pred Ee
Q psy12425 85 IT 86 (591)
Q Consensus 85 v~ 86 (591)
|.
T Consensus 78 v~ 79 (80)
T PF05790_consen 78 VL 79 (80)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 411
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.22 E-value=0.069 Score=45.01 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=37.1
Q ss_pred CCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425 23 QPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN 72 (591)
Q Consensus 23 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n 72 (591)
..|.+.|... |+.+....+.+++..| .|.+.+..+.++|.|+|...-
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence 4689999864 6667666666666444 699999999999999999753
No 412
>KOG4597|consensus
Probab=94.01 E-value=0.22 Score=45.74 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=65.7
Q ss_pred CeEEeeccccceeccccEEEEEEEcCCCCCeeEEec---CCccCCCCCceEEE--EeCCeEEEEEcceecccceEEEEEE
Q psy12425 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK---GSREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRA 367 (591)
Q Consensus 293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a 367 (591)
+.+..-+....+..+++..++|-+.|.+.+.|.|.+ +...+.......+. .-.....|.|-+....|+|-|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 455555566678889999999999999999999976 22222111111110 1112336899999999999999999
Q ss_pred EeCCcceeeeeEEEEec
Q psy12425 368 VNKGGVKSTKAELIIMT 384 (591)
Q Consensus 368 ~n~~g~~~~~~~l~v~~ 384 (591)
.+..|.....+.+.+..
T Consensus 277 rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccceeeccceeeeec
Confidence 99999988887777653
No 413
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=93.53 E-value=1.3 Score=39.27 Aligned_cols=115 Identities=11% Similarity=-0.061 Sum_probs=76.8
Q ss_pred eccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCC---CCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC
Q psy12425 449 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ---FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525 (591)
Q Consensus 449 ~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~---~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~ 525 (591)
.++.+...+.|.+.+.+..+.-+.++...-..+-..|. .+++...-.+.+.|+|..+.. +..|+++......
T Consensus 129 s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~ 203 (343)
T COG3401 129 SDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGN 203 (343)
T ss_pred cccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc-----cceEEEeccCCcc
Confidence 35667777889999988877766664443333323333 333444567789999986532 2378988877776
Q ss_pred CceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC-CCCCCC
Q psy12425 526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPSTT 568 (591)
Q Consensus 526 ~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~-~~~s~~ 568 (591)
...........+.+...-...|..|.|.|.+....|. +..+.+
T Consensus 204 e~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~ 247 (343)
T COG3401 204 EEYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNE 247 (343)
T ss_pred ccccceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCc
Confidence 6666666666667766666669999999999886554 555443
No 414
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.21 E-value=0.17 Score=42.78 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425 320 PKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370 (591)
Q Consensus 320 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~ 370 (591)
..|.+.|..+ +..+.......+...| .|.+.+....++|.|+|..+..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 3678999875 5556666677777777 6999999999999999998654
No 415
>PHA03273 envelope glycoprotein C; Provisional
Probab=93.10 E-value=7.7 Score=36.33 Aligned_cols=78 Identities=26% Similarity=0.341 Sum_probs=58.0
Q ss_pred EEEEEcceecccceEEEEEEEeCCccee--eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEEE
Q psy12425 348 YTLIINSVYGVDADEYVCRAVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KITW 422 (591)
Q Consensus 348 ~~l~i~~~~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~W 422 (591)
..|+|..+...++|.|+=+..+..|... ..+.+....+|.+.+.+. -+..|+...-.|.+..+-++ .+.|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~y~A~C~aa~YYPp~Sv~~rW 272 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-----PSLKGENYRAVCVVASYFPHSSVKLRW 272 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEE
Confidence 4699999999999999877656555443 444455566777665443 24679999999999776544 7999
Q ss_pred eeCCeEee
Q psy12425 423 YRDNEVIE 430 (591)
Q Consensus 423 ~~~~~~~~ 430 (591)
+.||.++.
T Consensus 273 f~dg~~V~ 280 (486)
T PHA03273 273 YKNAKEVD 280 (486)
T ss_pred EeCCeecc
Confidence 99999887
No 416
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.09 E-value=4.1 Score=41.16 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=72.0
Q ss_pred cCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceE
Q psy12425 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ 222 (591)
Q Consensus 143 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~ 222 (591)
.....+.+.++.+ ..|..+++|.|..|....-..+.......+..+|..+..+..... .-.+.+.|..|. ..-.+.
T Consensus 657 t~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt--~~~d~~ 732 (952)
T COG4733 657 TSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPT--GAVDIT 732 (952)
T ss_pred ccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCC--cceEEe
Confidence 3566788899877 679999999999988666554455555565556555555433322 223677887653 111111
Q ss_pred EEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425 223 GYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL 274 (591)
Q Consensus 223 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~ 274 (591)
.-.+.+....................+.-.++.++..+.|+.++.|..|...
T Consensus 733 ~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~ 784 (952)
T COG4733 733 STEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND 784 (952)
T ss_pred eeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccc
Confidence 1111111111111000000001112233368899999999999999988654
No 417
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=92.93 E-value=6.5 Score=35.03 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE-EEEEEec---CCCCCC----CCcceEEecCc--eEEEEecCCCCCC
Q psy12425 48 DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT-FTINITG---LPGPPI----GPLDVSEITKH--TCTLHWNPPKYDG 117 (591)
Q Consensus 48 ~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~-~~l~v~~---~p~~p~----~~~~~~~~~~~--~~~l~w~~p~~~~ 117 (591)
+....++|.++.++..|.+.+.+.|.....+.. .-..+.. ....+. +.+......+. .-..+...|....
T Consensus 12 g~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~ 91 (300)
T PF10179_consen 12 GQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSS 91 (300)
T ss_pred CCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCC
Confidence 344578899999999999999998875333222 1111111 111111 11111112111 1233444342111
Q ss_pred CcceeeEEEEEEecC-------CCc-eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCC
Q psy12425 118 GLKVTHYVVERRDIS-------MPH-WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189 (591)
Q Consensus 118 ~~~~~~y~~~~~~~~-------~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~ 189 (591)
...-..+.+.-+... ... -........-..+.+.++.++..|.+++.+.+..............+.......
T Consensus 92 ~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~~~~~ 171 (300)
T PF10179_consen 92 THQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPSKQPY 171 (300)
T ss_pred CCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCcccCCC
Confidence 111122222222110 000 000011223456889999999999999987765433222222112222333456
Q ss_pred CCCCCCCeEEeec--C--CeEEEEEecC
Q psy12425 190 PSPPGIPVVTQVG--G--DFVNLSWDKP 213 (591)
Q Consensus 190 p~~~~~~~~~~~~--~--~~v~l~w~~~ 213 (591)
|..|.++.+.... - ++++|.|...
T Consensus 172 P~LP~d~~Ik~f~~lrtC~SvTIAW~~s 199 (300)
T PF10179_consen 172 PQLPDDTSIKEFNKLRTCNSVTIAWLGS 199 (300)
T ss_pred CCCCCCCceeEEcCCcccceEEEEEecC
Confidence 7777777765544 3 6899999974
No 418
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.82 E-value=0.39 Score=31.52 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=27.6
Q ss_pred CCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425 525 MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP 565 (591)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~ 565 (591)
...|........ .+.+.+|.||+ |+|.|+|.|..|.-..
T Consensus 18 d~~W~~~~~~~~-~~~~~~L~~G~-Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 18 DDEWITLGSYSN-SISYTNLPPGK-YTLEVRAKDNNGKWSS 56 (66)
T ss_dssp ESSEEEESSTS--EEEEES--SEE-EEEEEEEEETTS-B-S
T ss_pred CCeEEECCCCcE-EEEEEeCCCEE-EEEEEEEECCCCCcCc
Confidence 377888755443 88889999995 9999999999986544
No 419
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.70 E-value=1.8 Score=39.10 Aligned_cols=108 Identities=16% Similarity=0.274 Sum_probs=67.3
Q ss_pred ceeeeecCCeEEEEEEecc--C-CCceEEEEECCEEee-----------------cCCceeEEEeC------CeEEEEEc
Q psy12425 3 NALYIPEGDNTKVKIFYAG--D-QPMEVSLTKNGRVVQ-----------------SDDRFKFTVLD------DYIIIFIK 56 (591)
Q Consensus 3 ~~~~v~~G~~~~l~C~~~~--~-p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~------~~~~l~i~ 56 (591)
+.+.+..|.+|.|.|.+.- + .-....|.--|.++. .++.+.+.... ..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3567888999999999854 2 334678977654332 12333443331 13789999
Q ss_pred ccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEE
Q psy12425 57 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128 (591)
Q Consensus 57 ~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~ 128 (591)
.+..+..|-|.|.|....-......-+.|. ..+-+.|.... ++-..+..|...+
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-----------------d~V~f~W~~e~-~n~T~V~Cyv~sy 405 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVA-----------------DHVFFKWNTEG-DNETKVACYAAQY 405 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEec-----------------cEEEEEEEecc-CceEEEEEEEEec
Confidence 999999999999997664443433334443 35667776332 2333455565555
No 420
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.64 E-value=0.86 Score=32.60 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=44.7
Q ss_pred eEEEEEeeeccCCCe--EEEeeCCeEeee---ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEE
Q psy12425 405 NVVVKIPFTGYPKPK--ITWYRDNEVIES---GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQ 477 (591)
Q Consensus 405 ~~~l~c~~~~~p~~~--v~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~ 477 (591)
.+.+.-...+.+... ++|..+...... ++++.+ ......|.|+.+++.|+|.|..++.+..|.. ...+.+.
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F--~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNF--TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEE--ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEee--eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 456666655555554 666554433322 223333 3457899999999999999999999999987 3344443
No 421
>KOG4152|consensus
Probab=92.44 E-value=1.1 Score=42.06 Aligned_cols=121 Identities=26% Similarity=0.406 Sum_probs=69.0
Q ss_pred cCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeee
Q psy12425 151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHE 230 (591)
Q Consensus 151 ~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~ 230 (591)
..|-.++.|.|+|.|.|..|.+..+......+.. ...|..|....+. ..-.-+.+.|.+|..++...|..|.....-
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~--pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~ylAi 728 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA--PGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYLAI 728 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeecc--CCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhhHh
Confidence 4577899999999999999999888766554431 2233333333222 223458899999988876677777543211
Q ss_pred c------C--CCccEEEEeeec-----CCc--eeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425 231 V------G--SDAWQRVNVAIC-----APS--QINIPNLIEGRQYEFRVYAQNEAGLSL 274 (591)
Q Consensus 231 ~------~--~~~~~~~~~~~~-----~~~--~~~i~~l~~~~~~~y~c~a~n~~g~~~ 274 (591)
. + ...+.+.--... ... .-.+.+....-...|++.|.|..|.+.
T Consensus 729 ~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGp 787 (830)
T KOG4152|consen 729 ITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGP 787 (830)
T ss_pred hhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCc
Confidence 1 0 111111110000 011 112334445667888888888877553
No 422
>PHA03042 CD47-like protein; Provisional
Probab=92.30 E-value=1.4 Score=37.64 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCCeEEEEEeeecc-----CCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425 402 KGENVVVKIPFTGY-----PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476 (591)
Q Consensus 402 ~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~ 476 (591)
=.+++.+.|.++.- ..-.+.|..++..+-..+ ..+.++|.+..-. .-.|+|+|+|.+..-.....+.+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n------~tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN------NTNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec------CCcceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence 36778899988653 455799999987764221 1133556654333 34799999999876655555555
Q ss_pred Ee
Q psy12425 477 QI 478 (591)
Q Consensus 477 ~v 478 (591)
..
T Consensus 103 k~ 104 (286)
T PHA03042 103 QY 104 (286)
T ss_pred EE
Confidence 44
No 423
>KOG1026|consensus
Probab=92.02 E-value=0.4 Score=48.08 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=99.8
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l 380 (591)
...+..+..+.+.|...+.|.+...|+...............-.. ....+ ..+.|.+.|..|.....+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~--~~~~~--------~~~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRS--ECEVL--------ENDLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccc--cceee--------echhhHHHHhhhhcCceeee
Confidence 345678899999999999999999999876555432221111110 01111 12899999999999888888
Q ss_pred EEecCCcccCCCCcccceeecCCCeEEEEEee---eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcce
Q psy12425 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF---TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTA 457 (591)
Q Consensus 381 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 457 (591)
.+..++....+...... .-.|.. .+.|.+...|..++..+........+..+...-+........+.|
T Consensus 271 ~~~~p~~~~~~~~~~~~---------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~ 341 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSD---------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNG 341 (774)
T ss_pred EEecccccccCCCCccc---------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccC
Confidence 88776544332221110 222332 367778889988876654322221111111122333333567789
Q ss_pred eEEEEEEcCCCccceEEEEEecCCC
Q psy12425 458 PYRVVAENDLGMDSAIVKIQISDRP 482 (591)
Q Consensus 458 ~y~c~a~n~~g~~~~~~~~~v~~~p 482 (591)
.|.|.+.+..|.........+...|
T Consensus 342 ~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 342 NYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cceeeecccCccccccCcCccccCC
Confidence 9999999999988776666666655
No 424
>PHA03189 UL14 tegument protein; Provisional
Probab=91.91 E-value=1.7 Score=37.72 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=43.9
Q ss_pred CceeeeecCCeEEEEEEeccC--CCceEE-----EEE----------CCEEeecC-------CceeEEEeCCe--EEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGD--QPMEVS-----LTK----------NGRVVQSD-------DRFKFTVLDDY--IIIFI 55 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~-----W~~----------~~~~~~~~-------~~~~~~~~~~~--~~l~i 55 (591)
|.++.+..|+.+++.|.+-.. |-..|. |.- .|..+... .+.+++..+-. .+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 678889999999999998543 333322 211 12222222 12223322222 34444
Q ss_pred cccCCCCceEEEEEEEcCCeee
Q psy12425 56 KEIRKEDAGDYTVNLSNSSGSV 77 (591)
Q Consensus 56 ~~~~~~d~g~Y~c~~~n~~g~~ 77 (591)
++..+.+|.|.|...|.....
T Consensus 139 -~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred -EEEecccceEEEEecccccee
Confidence 566788999999999875443
No 425
>PLN02533 probable purple acid phosphatase
Probab=91.54 E-value=1.9 Score=41.39 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=42.5
Q ss_pred CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec-------------eeeeeEEEEcCcccC
Q psy12425 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-------------NTRFTTMAITGLSPG 547 (591)
Q Consensus 481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~-------------~~~~~~~~i~~l~~~ 547 (591)
.+..|..+.+.-.+.+++.|+|.... ...+. |.|....+..+.... .+......|.+|.|+
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQD--SIPPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN 113 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCC--CCCCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence 45677888877667889999998642 11122 334332222111111 122346789999999
Q ss_pred ceEEEEEE
Q psy12425 548 HQYEFRVY 555 (591)
Q Consensus 548 ~~Y~~~v~ 555 (591)
+.|.|+|-
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999993
No 426
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=91.34 E-value=1.8 Score=31.54 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec-----eee---eeEEEEc--CcccCceE
Q psy12425 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-----NTR---FTTMAIT--GLSPGHQY 550 (591)
Q Consensus 481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~~~---~~~~~i~--~l~~~~~Y 550 (591)
+|..|..+.........++--|++.. +++.+ ..|.+.|.... ..|+... ... .....+. +..--..|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 56777777777777788999999654 33323 33999998776 6676542 111 1224444 77888999
Q ss_pred EEEEEEEcCCcC
Q psy12425 551 EFRVYAENVYGR 562 (591)
Q Consensus 551 ~~~v~A~n~~G~ 562 (591)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999999984
No 427
>PHA03269 envelope glycoprotein C; Provisional
Probab=90.90 E-value=15 Score=34.81 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=58.0
Q ss_pred EEEEEcceecccceEEEEEEEeC-Cc--ceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEE
Q psy12425 348 YTLIINSVYGVDADEYVCRAVNK-GG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KIT 421 (591)
Q Consensus 348 ~~l~i~~~~~~d~g~y~c~a~n~-~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~ 421 (591)
..|.|..+...++|.|+=+..+. .+ .....+.+.+..+|.+...+. -+..|+...-.|.+..+-++ .+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-----PVL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-----PVLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence 36999999999999998665432 22 334556777777787665443 24679999999999876544 799
Q ss_pred EeeCCeEeee
Q psy12425 422 WYRDNEVIES 431 (591)
Q Consensus 422 W~~~~~~~~~ 431 (591)
|+.|+.++..
T Consensus 364 Wf~ng~~V~~ 373 (566)
T PHA03269 364 WTSNFGNIGK 373 (566)
T ss_pred EEeCCcccCc
Confidence 9999988864
No 428
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=90.35 E-value=0.2 Score=48.68 Aligned_cols=212 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEE--cceecccceEEEEEEEeCCc-ceeeeeEEEEec--CCcccCCCCcccceeecCCCeEEEEEeeec----cCCCe
Q psy12425 349 TLII--NSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT--APKFNVPPRFRDTAYFDKGENVVVKIPFTG----YPKPK 419 (591)
Q Consensus 349 ~l~i--~~~~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~--~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~----~p~~~ 419 (591)
.+.| ..+.+...+.|+..+....+ .......+.+.. +|.+.+.........+..++.+.|...+.+ .....
T Consensus 149 ~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~ 228 (440)
T PF02010_consen 149 SLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVS 228 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEE
Confidence 4555 45566666666666666554 223334444432 233322221111122566777777655543 23457
Q ss_pred EEEeeC--------CeEeeeccceEEEecCCeeEEEEe--ccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCCCCCCCC
Q psy12425 420 ITWYRD--------NEVIESGGHFHVETSERHAILTIR--DASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488 (591)
Q Consensus 420 v~W~~~--------~~~~~~~~~~~~~~~~~~~~l~i~--~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~ 488 (591)
+.|... ...+... ............|.|. .+.+...|.+++.+.+..+.. ...+.+.+..+|..-. .
T Consensus 229 y~Wsl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g~-c 306 (440)
T PF02010_consen 229 YSWSLFSLDGVSDSNSELPDW-SSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGGS-C 306 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeecccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 888770 0011000 0111112235566665 356666777888888876664 5666677766663221 2
Q ss_pred eeee----ecCCeeEEEeeccccCCCcceeeEEEEe-eeCCCCceEEeceeeeeE---EEEcCcccCc--eEEEEEEEEc
Q psy12425 489 TVED----IGHDSLALVWRAPIWDGGSNITNYIVEK-REHPMSSWIRVGNTRFTT---MAITGLSPGH--QYEFRVYAEN 558 (591)
Q Consensus 489 ~~~~----~~~~~v~l~W~~p~~~~~~~~~~y~v~~-~~~~~~~~~~~~~~~~~~---~~i~~l~~~~--~Y~~~v~A~n 558 (591)
.+.. .-.+.+++.|.--.++. ..+.|.+.+ .......|.....+.... +.|.--..+. .-.+.|.+.+
T Consensus 307 ~v~P~~G~al~T~Ft~~c~~~~d~~--~pL~Y~f~~~~~~~~~~~~~L~~~~~~~~~~~~LP~g~~~~~~~~~i~v~V~D 384 (440)
T PF02010_consen 307 SVSPSSGYALETTFTITCSGWTDDD--QPLTYQFYYSSDDGSGSWNLLYEGSSPSSISTYLPPGDENNDYNVTIYVQVCD 384 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2221 12345666665322122 256788887 333444555443222222 2332222223 4456667788
Q ss_pred CCcCCC
Q psy12425 559 VYGRSD 564 (591)
Q Consensus 559 ~~G~~~ 564 (591)
..|...
T Consensus 385 ~~ga~~ 390 (440)
T PF02010_consen 385 SLGACS 390 (440)
T ss_dssp ------
T ss_pred cccccc
Confidence 888655
No 429
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=90.18 E-value=0.75 Score=44.78 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=26.8
Q ss_pred eEEEEEEeccCCCceEEEEECCE----EeecCCceeEEEeCCeEEEEEcccCC-CCceEEEEEEE--cCC-eeeEEEEEE
Q psy12425 12 NTKVKIFYAGDQPMEVSLTKNGR----VVQSDDRFKFTVLDDYIIIFIKEIRK-EDAGDYTVNLS--NSS-GSVSGTFTI 83 (591)
Q Consensus 12 ~~~l~C~~~~~p~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~--n~~-g~~~~~~~l 83 (591)
.+.|.|.. .-...+.|..-.. ....... ..+...|.|..-.. ...+.|.+.+. +.. ......+.|
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~~~~-----~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v 74 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQDMDN-----SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTV 74 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT-------SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEE
T ss_pred Cccccccc--ccceEEEEEEEecCCcCccccccc-----cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEE
Confidence 46778933 3456889976321 1111111 11234677776554 44677788777 222 233555777
Q ss_pred EEecCCCCCCCCc--ceEEecCceEEEEecCCCCCCCc---ceeeEEEEEEecCCC--c----eEEEEeecCcceEEE--
Q psy12425 84 NITGLPGPPIGPL--DVSEITKHTCTLHWNPPKYDGGL---KVTHYVVERRDISMP--H----WICISTTCHDTTFIV-- 150 (591)
Q Consensus 84 ~v~~~p~~p~~~~--~~~~~~~~~~~l~w~~p~~~~~~---~~~~y~~~~~~~~~~--~----~~~~~~~~~~~~~~i-- 150 (591)
.|...|..+...- .........+.|......+++.. ....|.+........ . -...........+.+
T Consensus 75 ~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~ 154 (440)
T PF02010_consen 75 TVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPA 154 (440)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred EEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEh
Confidence 7776544333210 00111123445443221111111 223455544433222 0 000011223344555
Q ss_pred cCCcCCcEEEEEEEEEccCC
Q psy12425 151 QGLTEGQEYLFHVMAVNENG 170 (591)
Q Consensus 151 ~~l~~~~~y~~~~~a~n~~g 170 (591)
..|.++..|.|++.+....+
T Consensus 155 ~~l~~~~~y~f~ltv~k~~r 174 (440)
T PF02010_consen 155 STLSPGSTYTFTLTVSKGSR 174 (440)
T ss_dssp --------------------
T ss_pred HHcCCCceEEEEEEEEeCCC
Confidence 56888888999999987664
No 430
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=89.95 E-value=2.4 Score=31.26 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=47.6
Q ss_pred cCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEE--EeecCcceEEEcCCc--CCcEEEEEEEEEcc
Q psy12425 102 TKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI--STTCHDTTFIVQGLT--EGQEYLFHVMAVNE 168 (591)
Q Consensus 102 ~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~--~~~~y~~~~~a~n~ 168 (591)
..-...|+|+++.. ...-..|.+++.......|..+ ........+.+.... ....|.+||+|...
T Consensus 33 ~nf~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~ 101 (107)
T PF01108_consen 33 VNFKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVG 101 (107)
T ss_dssp ETTEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEET
T ss_pred ECCceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeC
Confidence 34568999998442 2245579999997778899988 445666777776644 67899999999854
No 431
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=89.90 E-value=4.5 Score=28.51 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=36.9
Q ss_pred eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425 12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79 (591)
Q Consensus 12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~ 79 (591)
...|.+.+.+. ...+.|+.||+.+...... ..+. ..+...|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 45555555554 3499999999998443221 1332 2335789999999988887654
No 432
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=88.74 E-value=3.7 Score=41.42 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=35.9
Q ss_pred EEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425 518 VEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP 565 (591)
Q Consensus 518 v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~ 565 (591)
+.+.......|.....+....+.+.++-+| .|.++|+|.|..|....
T Consensus 641 ~a~~a~~~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~ 687 (952)
T COG4733 641 WAYEAGWDGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNSP 687 (952)
T ss_pred HHhhcccCCceEecccccccceeecCcCcc-ceEEEEEEeeccCCCCC
Confidence 333333334777777888899999999995 69999999999997543
No 433
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=87.68 E-value=34 Score=34.65 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=125.9
Q ss_pred ccceeccccEEEEEEEcCCCCCeeEE--ecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE--eCCcce--
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTISW--LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV--NKGGVK-- 374 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~W--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~--n~~g~~-- 374 (591)
......|+.+.+.|.+.|.....+.. .++|..+.... -+....+ ...|..+|.|+..+. +.....
T Consensus 395 ~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~------Y~~~~~~---~f~P~~~G~Y~IeV~vKdk~S~~~y 465 (667)
T PRK14081 395 GKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID------YGKNNWV---NFIPEEKGNYELEVRVKDKYSDKEY 465 (667)
T ss_pred CCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee------cccccEE---EEEECCCeeEEEEEEEecccCchhc
Confidence 35577899999999998765555543 23555443210 0011122 345678899887654 433322
Q ss_pred --eeeeEEEEec-CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEe--eCCeEeeeccceEEEecCCeeEEEEe
Q psy12425 375 --STKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY--RDNEVIESGGHFHVETSERHAILTIR 449 (591)
Q Consensus 375 --~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~--~~~~~~~~~~~~~~~~~~~~~~l~i~ 449 (591)
...+.+.|.. .|.....-..........|+.+++.|.+++.-...+.+. .+|.... .+.-.....+++.
T Consensus 466 D~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~------~t~Ys~~~~ysf~ 539 (667)
T PRK14081 466 DAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVE------ETDYIKNKKYKFI 539 (667)
T ss_pred ccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEE------EeeccccceEEEe
Confidence 3446666665 332111101111233467999999999988655544432 3444331 1212233344443
Q ss_pred ccCCCcceeEEEEEE--cCCCcc----ceEEEEEecCCCCCCCCCeeeeecC---CeeEEEeeccccCCCcceeeEEEEe
Q psy12425 450 DASNVDTAPYRVVAE--NDLGMD----SAIVKIQISDRPDPPQFPTVEDIGH---DSLALVWRAPIWDGGSNITNYIVEK 520 (591)
Q Consensus 450 ~~~~~~~g~y~c~a~--n~~g~~----~~~~~~~v~~~p~~p~~~~~~~~~~---~~v~l~W~~p~~~~~~~~~~y~v~~ 520 (591)
|..+|.|++.+. |..... ...+.+.|..+ .|+.+..+..... -...++|.+-. .||..+ .|+.+.
T Consensus 540 ---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-~pi~nt~~~~~~~~~~~n~~~t~~~~~-~gg~~v-~Yef~v 613 (667)
T PRK14081 540 ---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-LPITNTKIKTSKKKFKCNEEVTFSVKS-EGGKDV-CYEFYI 613 (667)
T ss_pred ---ecCCceEEEEEEEcccccccccccceEEEEEEcCC-CCceeeEEEeecceEEcCCeEEEEEEc-cCCCcE-EEEEEE
Confidence 666888877765 443322 34556667643 3444444332111 12345555432 456444 777766
Q ss_pred eeCCCCceEEece-eeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425 521 REHPMSSWIRVGN-TRFTTMAITGLSPGHQYEFRVYAENVYGR 562 (591)
Q Consensus 521 ~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~ 562 (591)
.. .+.|..+.. .....+++.-...| .|.+-|.+....+.
T Consensus 614 ~~--~g~w~~vq~ys~k~~ysf~p~~~g-~Y~ilvl~ks~~~k 653 (667)
T PRK14081 614 ME--KGEWKLVQKYSRKNYYSFMPFNKG-KYKVLVLCKSYYKK 653 (667)
T ss_pred EE--CCcEEEEeeccccCceEEEeccCC-cEEEEEEEeccccc
Confidence 54 568888743 34456665555544 36666666655553
No 434
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=87.17 E-value=6.4 Score=25.77 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=39.1
Q ss_pred CceEEEEECCEEeecCCceeEEEeCC-eEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425 24 PMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85 (591)
Q Consensus 24 ~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v 85 (591)
.....|+++++.+.. ..+...++ -.+..-..+.+...|.+++.+....|..-......|
T Consensus 6 ~v~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 346789999987632 22222222 234455566668999999999999988876666554
No 435
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.73 E-value=7.8 Score=27.29 Aligned_cols=64 Identities=11% Similarity=0.299 Sum_probs=40.9
Q ss_pred ccceeccccEEEEEEEcCC-----CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425 301 NANAIQNHNAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 366 (591)
...+..|..++++|..... ....+.|..++..++ ...+....+ ...++++.++.....-.|-|.
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~-~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVIND-TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEEST-TEEEEEESS--SSEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCC-eEEEEEEccCCCCCceEEEEE
Confidence 3447789999999998532 456799999888555 445554433 346788888776666666665
No 436
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.31 E-value=3.1 Score=37.46 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.6
Q ss_pred eEEEEEEecc-CC-CceEEEEEC
Q psy12425 12 NTKVKIFYAG-DQ-PMEVSLTKN 32 (591)
Q Consensus 12 ~~~l~C~~~~-~p-~~~v~W~~~ 32 (591)
.++|+|.+.| .| ...+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 44 458899999
No 437
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=82.40 E-value=9.9 Score=26.09 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.3
Q ss_pred EEEcceecccceEEEEEEE
Q psy12425 350 LIINSVYGVDADEYVCRAV 368 (591)
Q Consensus 350 l~i~~~~~~d~g~y~c~a~ 368 (591)
........+|+|.+.|.|.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 4556677799999999994
No 438
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=80.36 E-value=18 Score=25.51 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=35.9
Q ss_pred eEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472 (591)
Q Consensus 405 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~ 472 (591)
...|.+.+.+. ...+.|+.||..+..... ...+. ..+...|.|+..+.+..|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 44555566555 449999999998832211 12222 2335679999999988887643
No 439
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=80.13 E-value=18 Score=25.52 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=49.3
Q ss_pred eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425 297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376 (591)
Q Consensus 297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~ 376 (591)
..+....+..|+++.+.|......+..+.|.-.- .+..+....+=..+.+.+++. .....|.+.-.......
T Consensus 8 v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~ 79 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSA 79 (91)
T ss_dssp EESSEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEE
T ss_pred EECCccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEe
Confidence 3445666889999999999876544455664321 111122222233577888885 35778998875445567
Q ss_pred eeEEEEecCCc
Q psy12425 377 KAELIIMTAPK 387 (591)
Q Consensus 377 ~~~l~v~~~p~ 387 (591)
++.+.|..+|.
T Consensus 80 ~~~ItVY~~Pe 90 (91)
T PF03921_consen 80 SANITVYKPPE 90 (91)
T ss_dssp EEEEEEEB--S
T ss_pred EEeeEEeCCCC
Confidence 78888877664
No 440
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=78.52 E-value=8.1 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.4
Q ss_pred eEEEEEeeeccCCC--eEEEeeC
Q psy12425 405 NVVVKIPFTGYPKP--KITWYRD 425 (591)
Q Consensus 405 ~~~l~c~~~~~p~~--~v~W~~~ 425 (591)
.+.|+|.|.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997544 6789999
No 441
>PHA03240 envelope glycoprotein M; Provisional
Probab=78.25 E-value=3.6 Score=33.50 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=43.8
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEE-------C-CE---Ee---ec--C----------CceeEEEeCCeEEEEEcc
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTK-------N-GR---VV---QS--D----------DRFKFTVLDDYIIIFIKE 57 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~-------~-~~---~~---~~--~----------~~~~~~~~~~~~~l~i~~ 57 (591)
++.+.+|++|+|.-.---.|.-.+.|++ + |. .+ .. . ....+...-.+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 5678999999996543224677899999 2 11 11 00 0 112222333446888889
Q ss_pred cCCCCceEEEEEEEcCCee
Q psy12425 58 IRKEDAGDYTVNLSNSSGS 76 (591)
Q Consensus 58 ~~~~d~g~Y~c~~~n~~g~ 76 (591)
+...|.|+|.-.--...|.
T Consensus 112 vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 112 LNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred EeecCcchhhhccCCCCCC
Confidence 9999999985544333343
No 442
>PHA03052 Hypothetical protein; Provisional
Probab=78.16 E-value=7.8 Score=25.06 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=27.5
Q ss_pred cceeecCCCeEEEEEeee-c--cCCCeEEEeeCCeEeee
Q psy12425 396 DTAYFDKGENVVVKIPFT-G--YPKPKITWYRDNEVIES 431 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~-~--~p~~~v~W~~~~~~~~~ 431 (591)
....+..|..+++.|.+. | ...+.|.|..|+..+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 456678899999999996 3 23557999999988743
No 443
>KOG4228|consensus
Probab=76.15 E-value=7 Score=41.16 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=80.7
Q ss_pred eEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeee
Q psy12425 458 PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537 (591)
Q Consensus 458 ~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~ 537 (591)
.|.|.+....|.......+.+..-|..|....+......++.+.|.... .....|.+.++..... +...+.....
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~----t~~~~y~v~~~~~~s~-~~~~~~~~~~ 75 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGS----TWPNYYQVIFKALSSG-YGYIDVDLTT 75 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccC----CChhhhheeeeEeccC-cceeecccee
Confidence 4899999999999999999999888777778888888888999998642 1445677766655444 4444444445
Q ss_pred EEEEcCcccCceEEEEEEEEcCCcCCCCCCCcce
Q psy12425 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571 (591)
Q Consensus 538 ~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~ 571 (591)
.+....+.+-+-|.+ .+.|..|.+..+.+...
T Consensus 76 ~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~ 107 (1087)
T KOG4228|consen 76 RLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAP 107 (1087)
T ss_pred ecccCCCCCcchhhh--hhcccccccccccccCC
Confidence 677778888888888 89999999888876543
No 444
>KOG4806|consensus
Probab=76.12 E-value=61 Score=29.37 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=69.2
Q ss_pred EeccCCCcceeEEEEEEcCCCcc-----ceEEEEEecCCCCCCCCCeeeee--cCCeeEEEeeccccCCCcceeeEEEEe
Q psy12425 448 IRDASNVDTAPYRVVAENDLGMD-----SAIVKIQISDRPDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVEK 520 (591)
Q Consensus 448 i~~~~~~~~g~y~c~a~n~~g~~-----~~~~~~~v~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~~~~y~v~~ 520 (591)
-..+.+...|.|.....|..-.. ..+...+..+.|+.|.+-.+..+ +-.+++|.|.-..+ .. ..|=|+.
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d---~~-~kyCIy~ 363 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPD---EE-LKYCIYV 363 (454)
T ss_pred EEEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcc---hh-eeEEEEE
Confidence 34455667788888887765433 12333444567899999888775 45689999984321 12 3344443
Q ss_pred eeCCCC-------------------------ceEEe-----ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425 521 REHPMS-------------------------SWIRV-----GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP 565 (591)
Q Consensus 521 ~~~~~~-------------------------~~~~~-----~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~ 565 (591)
...++. .|... ...+..+-+|.||.||.+|..-|.|.-..|..-+
T Consensus 364 ~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 364 FNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred ecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 322210 01111 1223446778999999999999999766665443
No 445
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=75.83 E-value=20 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=23.4
Q ss_pred eeeeecCCeEEEEEEeccCCCceEEEEECC
Q psy12425 4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNG 33 (591)
Q Consensus 4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~ 33 (591)
+-.+..|+.+.|...........+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 346889999999998844556799999988
No 446
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=75.33 E-value=15 Score=25.97 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=38.8
Q ss_pred ccEEEEEE-EcCCCCCeeEEecCCccCCCCCceEEE--EeCC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425 308 HNAQFQCT-ITGCPKPTISWLKGSREITPSARHHIF--AEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380 (591)
Q Consensus 308 ~~~~l~c~-~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l 380 (591)
..+.-.|. +.|.|++.|.|.-+ +......... .+|. ...+.+......+.-..+|.+.........++.|
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 34566798 58899999999743 1111011110 1111 1145566666677778999987764433333333
No 447
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=74.10 E-value=16 Score=25.87 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=37.5
Q ss_pred EEEEEE-eccCCCceEEEEE--CCEEee---cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425 13 TKVKIF-YAGDQPMEVSLTK--NGRVVQ---SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83 (591)
Q Consensus 13 ~~l~C~-~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l 83 (591)
+.=.|. +.|.|+..|+|.- +|..-. ...+..++ -.+.+.+......|.-..+|.+.........++.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~T---V~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVT---VISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEE---EEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 344588 5779999999974 233200 00000010 01356666667777778999987654333334444
No 448
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=72.41 E-value=1.4e+02 Score=31.86 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCCCeeeeecCCeeEEEeecccc--CCCcceeeEEEEeeeCCCC---ceE---Ee--------ceeeeeE--EEEcCcc-
Q psy12425 485 PQFPTVEDIGHDSLALVWRAPIW--DGGSNITNYIVEKREHPMS---SWI---RV--------GNTRFTT--MAITGLS- 545 (591)
Q Consensus 485 p~~~~~~~~~~~~v~l~W~~p~~--~~~~~~~~y~v~~~~~~~~---~~~---~~--------~~~~~~~--~~i~~l~- 545 (591)
..++++. ..+..|.|+|++|.+ |.| ....|.+.+...... .+. .+ ..++... +...+..
T Consensus 759 ItDL~~~-~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~ 836 (863)
T TIGR00868 759 ITDLEAG-FQGDNIILTWTAPGDVLDHG-RADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPI 836 (863)
T ss_pred ceeeEEe-ecCCEEEEEeeCCCccCCCC-ccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccc
Confidence 3445553 456679999999986 444 678999988643110 000 00 1122233 3334433
Q ss_pred -cCceEEEEEEEEcCCcC-CCCC
Q psy12425 546 -PGHQYEFRVYAENVYGR-SDPS 566 (591)
Q Consensus 546 -~~~~Y~~~v~A~n~~G~-~~~s 566 (591)
.++.|.|-++|.+..|. |+.|
T Consensus 837 ~~~~~~~~ai~a~d~~~~~s~~s 859 (863)
T TIGR00868 837 ENGTDLFIAVQAIDKANLTSEVS 859 (863)
T ss_pred cCCeEEEEEEEEEcccccccccc
Confidence 57799999999999986 4443
No 449
>PHA03112 IL-18 binding protein; Provisional
Probab=68.00 E-value=32 Score=26.53 Aligned_cols=27 Identities=7% Similarity=-0.130 Sum_probs=21.0
Q ss_pred eecCCeEEEEEEeccC-CC-ceEEEEECC
Q psy12425 7 IPEGDNTKVKIFYAGD-QP-MEVSLTKNG 33 (591)
Q Consensus 7 v~~G~~~~l~C~~~~~-p~-~~v~W~~~~ 33 (591)
-.+|+++.|+|.+-+. |. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4679999999999764 54 567899765
No 450
>KOG3632|consensus
Probab=67.33 E-value=32 Score=36.03 Aligned_cols=122 Identities=20% Similarity=0.136 Sum_probs=74.0
Q ss_pred EEEEeccCCCcceeEEEEEEcC-CC----------c--cceEEEEEecCCCCCCCCCeeee-ecCCeeEEEeecccc---
Q psy12425 445 ILTIRDASNVDTAPYRVVAEND-LG----------M--DSAIVKIQISDRPDPPQFPTVED-IGHDSLALVWRAPIW--- 507 (591)
Q Consensus 445 ~l~i~~~~~~~~g~y~c~a~n~-~g----------~--~~~~~~~~v~~~p~~p~~~~~~~-~~~~~v~l~W~~p~~--- 507 (591)
.+++-++.+...|..++.|.-. .+ . ....+......+|.+|.++.+.. .+...+.++|.||..
T Consensus 719 ~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsa 798 (1335)
T KOG3632|consen 719 NYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSA 798 (1335)
T ss_pred HHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccc
Confidence 3556677777777777766543 11 1 11222333346778888888865 567889999998754
Q ss_pred --CCCcceeeEEEEeeeCCCCceEEece--eeeeEEEEcCccc-CceEEEEEEEEcCCcCCCCCCCc
Q psy12425 508 --DGGSNITNYIVEKREHPMSSWIRVGN--TRFTTMAITGLSP-GHQYEFRVYAENVYGRSDPSTTS 569 (591)
Q Consensus 508 --~~~~~~~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~l~~-~~~Y~~~v~A~n~~G~~~~s~~~ 569 (591)
.+|..+++|.++.. +.....+.. ...+.+.+.-|+- -....+.|+....-|.+.-|.+.
T Consensus 799 g~sngv~vtgYavyad---gqkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsipA 862 (1335)
T KOG3632|consen 799 GCSNGVAVTGYAVYAD---GQKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSIPA 862 (1335)
T ss_pred cccCceeeeeeeeeeC---CceeeeeecccCCceEEEeeeehhhheecceeEEecccCccccccccc
Confidence 35668899999876 222222211 1223344444444 45567888887788877655543
No 451
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=65.70 E-value=39 Score=22.89 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=36.4
Q ss_pred eecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEE--EEEcCCeeeEEEEEE
Q psy12425 7 IPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV--NLSNSSGSVSGTFTI 83 (591)
Q Consensus 7 v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c--~~~n~~g~~~~~~~l 83 (591)
...|+.+.|.+...+ .....+.|..++.....+. ...+ .-...|.|.. .+.|..|..+....+
T Consensus 11 ~~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~---------~~~~-----~y~~~G~y~v~l~v~n~~g~~~~~~~i 76 (79)
T smart00089 11 GVAGESVTFTATSSDDGSIVSYTWDFGDGTSSTGP---------TVTH-----TYTKPGTYTVTLTVTNAVGSASATVTV 76 (79)
T ss_pred CCCCCEEEEEEECCCCCCeEEEEEEeCCCCccCCC---------CEEE-----EeCCCcEEEEEEEEEcCCCcEEEEEEE
Confidence 347889999988765 3467888977543221111 1111 1134566654 456777755555555
Q ss_pred EE
Q psy12425 84 NI 85 (591)
Q Consensus 84 ~v 85 (591)
.|
T Consensus 77 ~v 78 (79)
T smart00089 77 VV 78 (79)
T ss_pred EE
Confidence 44
No 452
>KOG4228|consensus
Probab=63.92 E-value=56 Score=35.01 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=44.3
Q ss_pred EEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCC
Q psy12425 65 DYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134 (591)
Q Consensus 65 ~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~ 134 (591)
.|.|.+....|-......+.|...|..+..+ .+......++...|.... . ....|.+..+.....
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~-~vt~~~~~~~~~~~~~~~---t-~~~~y~v~~~~~~s~ 65 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTP-NVTGSTATSWVQAELLGS---T-WPNYYQVIFKALSSG 65 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCc-ccccccccceeehhhccC---C-ChhhhheeeeEeccC
Confidence 3999999888888888889998877666653 555556667777776544 1 344566655544433
No 453
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=62.79 E-value=21 Score=23.04 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=15.1
Q ss_pred eecCCeEEEEEEeccCCCceEEEEE
Q psy12425 7 IPEGDNTKVKIFYAGDQPMEVSLTK 31 (591)
Q Consensus 7 v~~G~~~~l~C~~~~~p~~~v~W~~ 31 (591)
|..|++++|. |.+...|+|+|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 6678887773 55556799984
No 454
>KOG3632|consensus
Probab=62.43 E-value=50 Score=34.70 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=88.6
Q ss_pred CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425 88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN 167 (591)
Q Consensus 88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 167 (591)
.+..|.. +.+......+..++|-+-..+. ...-|. . ..... ........+++.+|.+++.|..++.+.-
T Consensus 671 a~vvpsq-lrv~n~tqtSa~itwvp~nsn~--~Hviyl----n--~eE~~--ps~a~~y~ytf~~lrpgt~y~a~vea~~ 739 (1335)
T KOG3632|consen 671 APVVPSQ-LRVWNATQTSAMITWVPFNSNF--LHVIYL----N--AEEPR--PSVAEMYNYTFMRLRPGTDYWASVEAAL 739 (1335)
T ss_pred ccccchh-hhhhhhhchhhheeeeecCCCc--ceeeec----C--CccCC--CchhhhhHHHHhccCCCCccceeccccc
Confidence 4455555 6777778888999997543111 111111 0 00000 0122344577889999999999888764
Q ss_pred c-CCC-----CCCCCccCcc-cccCCCCCCCCCCCCeEEe-ecCCeEEEEEecCC-----CCCCcceEEEEEEeeecCCC
Q psy12425 168 E-NGM-----GPPLEGINPI-KAKSPYDKPSPPGIPVVTQ-VGGDFVNLSWDKPL-----DDGGSRIQGYWIDKHEVGSD 234 (591)
Q Consensus 168 ~-~g~-----~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~-~~~~~v~l~w~~~~-----~~~~~~~~~y~~~~~~~~~~ 234 (591)
. .+. -........+ ...-+..+|.+|....+.. ..+..+.++|.++. ..++-.+++|.+.... .
T Consensus 740 p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg---q 816 (1335)
T KOG3632|consen 740 PRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG---Q 816 (1335)
T ss_pred CcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC---c
Confidence 3 111 1111111111 1223345666776666543 44667899999874 3345577888876552 1
Q ss_pred ccEEEEeeecCCceeeecCccc-CCcEEEEEEEEcCCCCCC
Q psy12425 235 AWQRVNVAICAPSQINIPNLIE-GRQYEFRVYAQNEAGLSL 274 (591)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~-~~~~~y~c~a~n~~g~~~ 274 (591)
....+.........+.+..+.. ...+.+.++.....|.+.
T Consensus 817 kv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv 857 (1335)
T KOG3632|consen 817 KVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV 857 (1335)
T ss_pred eeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence 2222222222233333443433 234455555555555443
No 455
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=62.25 E-value=51 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=40.2
Q ss_pred EecCceEEEEecCCCC-----CCC------cceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425 100 EITKHTCTLHWNPPKY-----DGG------LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV 166 (591)
Q Consensus 100 ~~~~~~~~l~w~~p~~-----~~~------~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 166 (591)
...+..+.+.+.+|.. ... ..-..|.+.+...+...-. .........+.+.+|.+++.|-+++.+.
T Consensus 11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~YCv~V~~~ 87 (106)
T PF09294_consen 11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKK-KEIETKNSSVTLSDLKPGTNYCVSVQAF 87 (106)
T ss_dssp EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEE-EEEESSSEEEEEES--TTSEEEEEEEEE
T ss_pred EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccce-EEEeecCCEEEEeCCCCCCCEEEEEEEE
Confidence 4556677777776640 001 0113488887776665222 2224456677999999999999999993
No 456
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=56.85 E-value=75 Score=23.26 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecC-Cce-----eeec--CcccCCcE
Q psy12425 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA-PSQ-----INIP--NLIEGRQY 260 (591)
Q Consensus 189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~~-----~~i~--~l~~~~~~ 260 (591)
+|..|..+.........++-.|.+....+ ....|.+.|...+ ..|......... ..+ -.+. ++..-..|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~--l~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGN--LPTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSST--STCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCC--CCCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 45566667777777788999999865433 2233888888766 667776544321 122 3333 66777888
Q ss_pred EEEEEEEcCCCC
Q psy12425 261 EFRVYAQNEAGL 272 (591)
Q Consensus 261 ~y~c~a~n~~g~ 272 (591)
.+++.+.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 888888887664
No 457
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=56.82 E-value=44 Score=20.76 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=21.4
Q ss_pred EEEEcCcccCceEEEEEEEEcCCcCCCCC
Q psy12425 538 TMAITGLSPGHQYEFRVYAENVYGRSDPS 566 (591)
Q Consensus 538 ~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s 566 (591)
++.+..+ ....|.|++.|.+.+|.....
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 4445555 577899999999999986554
No 458
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=56.33 E-value=55 Score=21.48 Aligned_cols=58 Identities=10% Similarity=0.252 Sum_probs=40.6
Q ss_pred eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 419 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 419 ~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
...|++++..... ..+.+. .+.-....-+.+.+...|..++.+....|..-....+.+
T Consensus 8 ~H~W~~~g~~~~~-i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVAR-IPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEE-EEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4689999887642 122222 334566777777888999999999999888766665554
No 459
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=56.06 E-value=1.6e+02 Score=26.84 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=97.8
Q ss_pred ccCCCCceEEEEEEEcCCeeeEEEEE-EEEecCCCCCCC-CcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCC
Q psy12425 57 EIRKEDAGDYTVNLSNSSGSVSGTFT-INITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134 (591)
Q Consensus 57 ~~~~~d~g~Y~c~~~n~~g~~~~~~~-l~v~~~p~~p~~-~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~ 134 (591)
++.....+.|...+.+..+..+.++. +.....-.|+.. .+.+.-...+.+.|+|..+...+ .|.+........
T Consensus 130 ~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~-----yy~IY~~~~g~e 204 (343)
T COG3401 130 DLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED-----YYRIYASDSGNE 204 (343)
T ss_pred ccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccccc-----eEEEeccCCccc
Confidence 44455556666776665555444422 111112122221 02233345677899998655222 577766665554
Q ss_pred ceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCC-CCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecC
Q psy12425 135 HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP-LEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 213 (591)
Q Consensus 135 ~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~ 213 (591)
....+. ....+.+.......+..+.|.+.+....+.... ......-........|.++..... ...+-|.|+.-
T Consensus 205 ~~~~ia-~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~----~s~i~V~~E~~ 279 (343)
T COG3401 205 EYGFIA-QTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTE----ASFIGVAAEQN 279 (343)
T ss_pred ccccee-eccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceee----eeeeeEEeccc
Confidence 433333 334445555445557888888888865443322 211111111122222333322211 12234666542
Q ss_pred CCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425 214 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL 274 (591)
Q Consensus 214 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~ 274 (591)
. ......|.+.....+... ... ......+....+..+..+.|.+.+.+..|...
T Consensus 280 ~---~~~av~ytvyr~~~g~~~--~~f--~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 280 Q---LRQAVTYTVYRVEDGTPT--KFF--TITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred c---cceeeEEeeeeccCCCcc--eee--eeeeccccchhhccccceeEEEEEeccccccc
Confidence 1 123444544433332211 111 11234556777788899999999998877654
No 460
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=55.97 E-value=85 Score=24.20 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=35.7
Q ss_pred cCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425 494 GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573 (591)
Q Consensus 494 ~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~ 573 (591)
..-.|.|+|..= .|..-..|.++.. +..-|.-... ......+. ...+..|.|+|+..|..|-+.+. +..+..
T Consensus 36 ~~v~V~VtwN~W---sG~~Gd~~kly~d--G~~V~tG~~~-~~~~a~~~-~~~gG~y~~~VeLCN~~GCS~S~-~~~V~V 107 (133)
T PF08329_consen 36 DQVDVSVTWNVW---SGTNGDTAKLYFD--GVLVWTGPSP-QQKSATFT-VTKGGRYQMQVELCNADGCSTSA-PVEVVV 107 (133)
T ss_dssp SSEEEEEEEE-S---SS---SEEEEEET--TEEEEEEE---SEEEEEEE-E-S-EEEEEEEEEEETTEEEE----EEEEE
T ss_pred CceEEEEEEEEe---cCCCCCEEEEEEC--CEEEEeCCCc-cCceEEEE-ecCCCEEEEEEEEECCCCcccCC-CEEEEE
Confidence 445788899852 1223356666542 2223322222 12233333 56777899999999999976644 444433
No 461
>PHA03189 UL14 tegument protein; Provisional
Probab=55.39 E-value=1.5e+02 Score=26.40 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=40.3
Q ss_pred ccceeccccEEEEEEEcCCCCCeeE-------Eec----------CCccCCCC-------CceEEEEeCCeEEEEE-cce
Q psy12425 301 NANAIQNHNAQFQCTITGCPKPTIS-------WLK----------GSREITPS-------ARHHIFAEGDTYTLII-NSV 355 (591)
Q Consensus 301 ~~~~~~g~~~~l~c~~~~~p~~~v~-------W~~----------~~~~~~~~-------~~~~~~~~~~~~~l~i-~~~ 355 (591)
...+..|+.+++.|.+....-|.+. |.. .|..+.+. ..+++..-+..+.|++ -++
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 3446789999999998665443222 211 12222111 1222222222333333 257
Q ss_pred ecccceEEEEEEEeCCcce
Q psy12425 356 YGVDADEYVCRAVNKGGVK 374 (591)
Q Consensus 356 ~~~d~g~y~c~a~n~~g~~ 374 (591)
..+.+|.|.|...|.....
T Consensus 141 ~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 141 STSTAGMYECVLRNETHGL 159 (348)
T ss_pred EecccceEEEEecccccee
Confidence 7789999999998865433
No 462
>PHA03283 envelope glycoprotein E; Provisional
Probab=55.30 E-value=37 Score=32.74 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=34.2
Q ss_pred CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCC
Q psy12425 49 DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGP 91 (591)
Q Consensus 49 ~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~ 91 (591)
+...|+|.+++++++|.|....++..+.....+.|+|..++..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~ 174 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQ 174 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcC
Confidence 3467999999999999999999988775566677888764433
No 463
>PLN02533 probable purple acid phosphatase
Probab=51.20 E-value=87 Score=30.35 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=40.5
Q ss_pred CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEee-----------ecCCceeeecCcccC
Q psy12425 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA-----------ICAPSQINIPNLIEG 257 (591)
Q Consensus 189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~l~~~ 257 (591)
.+..|...++...+.+++.|+|...... .....|-. ............ ........|.+|.++
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~--~~~V~yG~----~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI--PPSVVYGT----VSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN 113 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC--CCEEEEec----CCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence 3445666677766788999999975432 23333322 111111111100 001145689999999
Q ss_pred CcEEEEEE
Q psy12425 258 RQYEFRVY 265 (591)
Q Consensus 258 ~~~~y~c~ 265 (591)
+.|.|+|.
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999994
No 464
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=50.48 E-value=12 Score=24.67 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.6
Q ss_pred cccCceEEEEEEEE
Q psy12425 544 LSPGHQYEFRVYAE 557 (591)
Q Consensus 544 l~~~~~Y~~~v~A~ 557 (591)
|.||..|.|+|+|.
T Consensus 67 LEpGgdY~Ftirak 80 (80)
T PF11344_consen 67 LEPGGDYSFTIRAK 80 (80)
T ss_pred ccCCCceEEEEecC
Confidence 89999999999983
No 465
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=48.58 E-value=92 Score=22.69 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=15.8
Q ss_pred CceeeeecCCeEEEEEEeccC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGD 22 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~ 22 (591)
|..+++..|+.++|.-.-.+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~ 54 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDS 54 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SS
T ss_pred cCEEEEcCCCeEEEEEEECCC
Confidence 788999999998888776543
No 466
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=47.57 E-value=79 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=20.3
Q ss_pred eecCCCeEEEEEeeeccCCCeEEEeeCC
Q psy12425 399 YFDKGENVVVKIPFTGYPKPKITWYRDN 426 (591)
Q Consensus 399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~ 426 (591)
.+..|..+.|...........+.|..++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 3467888999988844456689999887
No 467
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=45.13 E-value=1.6e+02 Score=23.68 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=31.9
Q ss_pred EEee-eccCCCeEEEeeCCeEeeeccceEE---EecC----CeeEEEEeccCCCcceeEEEEEEcC
Q psy12425 409 KIPF-TGYPKPKITWYRDNEVIESGGHFHV---ETSE----RHAILTIRDASNVDTAPYRVVAEND 466 (591)
Q Consensus 409 ~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~---~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~ 466 (591)
.|.. .-...|.++|......+..+...++ ...+ -.+...+...+-.+.-.|.|.+...
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 4555 4567889999987777765443222 1111 1233444555555556677766543
No 468
>PHA03112 IL-18 binding protein; Provisional
Probab=44.90 E-value=1.5e+02 Score=23.12 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=40.0
Q ss_pred cCCCeEEEEEeeecc-CC-CeEEEeeCCe-Eee---eccce----------EEEecCCeeEEEEeccCCC-cceeEEEEE
Q psy12425 401 DKGENVVVKIPFTGY-PK-PKITWYRDNE-VIE---SGGHF----------HVETSERHAILTIRDASNV-DTAPYRVVA 463 (591)
Q Consensus 401 ~~g~~~~l~c~~~~~-p~-~~v~W~~~~~-~~~---~~~~~----------~~~~~~~~~~l~i~~~~~~-~~g~y~c~a 463 (591)
.+++.+.|+|.+.+. |. .-+.|..++. ... ..+.+ .-........+.+.+++.+ ..-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 568999999999865 54 4688987652 211 11111 1111223566777777754 223788887
Q ss_pred EcCCCc
Q psy12425 464 ENDLGM 469 (591)
Q Consensus 464 ~n~~g~ 469 (591)
....|.
T Consensus 116 ~D~~~~ 121 (141)
T PHA03112 116 MDLDGP 121 (141)
T ss_pred ecCCch
Confidence 765544
No 469
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.98 E-value=59 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.0
Q ss_pred eEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425 50 YIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78 (591)
Q Consensus 50 ~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~ 78 (591)
..-|.|++.+++|+|.|..+++-......
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~ 151 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKA 151 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCC
Confidence 35699999999999999999875543333
No 470
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=41.65 E-value=1.1e+02 Score=20.65 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCCeEEEEEeeec-cCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425 402 KGENVVVKIPFTG-YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478 (591)
Q Consensus 402 ~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v 478 (591)
.+..+.|.+...+ .....+.|...+...... ....++.. ....|..++.+.|..|..+....+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~---------~~~~~~y~---~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTG---------PTVTHTYT---KPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCC---------CCEEEEeC---CCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 4677788877654 345577887654321111 11111111 11234455667788885555555544
No 471
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=40.89 E-value=1.2e+02 Score=29.87 Aligned_cols=20 Identities=35% Similarity=0.786 Sum_probs=14.5
Q ss_pred eEEEEcCcccCceEEEEEEE
Q psy12425 537 TTMAITGLSPGHQYEFRVYA 556 (591)
Q Consensus 537 ~~~~i~~l~~~~~Y~~~v~A 556 (591)
..+.+.+|.|++.|.|++.+
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~ 83 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVV 83 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE
T ss_pred eecccCCCCCCceEEEEEEE
Confidence 46889999999999999999
No 472
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=39.66 E-value=57 Score=21.96 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred eeeeEEEEcCcccCceEEEEEEEE-cCCc
Q psy12425 534 TRFTTMAITGLSPGHQYEFRVYAE-NVYG 561 (591)
Q Consensus 534 ~~~~~~~i~~l~~~~~Y~~~v~A~-n~~G 561 (591)
+...+|.-.+|.+|..|.|+|+|. +..|
T Consensus 26 G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG 54 (75)
T TIGR03000 26 GTVRTFTTPPLEAGKEYEYTVTAEYDRDG 54 (75)
T ss_pred ccEEEEECCCCCCCCEEEEEEEEEEecCC
Confidence 345678889999999999999994 3444
No 473
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=39.25 E-value=1e+02 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=19.7
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEEC
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 32 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~ 32 (591)
|..++|.+|++|++.=. +.....+....+
T Consensus 16 P~~i~V~~G~tV~~~n~--~~~~Hnv~~~~~ 44 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNN--DSMPHNVVFVAD 44 (99)
T ss_dssp SSEEEEETTEEEEEEEE--SSSSBEEEEETT
T ss_pred CCEEEECCCCEEEEEEC--CCCCceEEEecc
Confidence 78899999999988644 333445555443
No 474
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=38.86 E-value=1.5e+02 Score=21.37 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=48.9
Q ss_pred CCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-----ceeeeeEEEEcCccc----CceEEEEEE
Q psy12425 485 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNTRFTTMAITGLSP----GHQYEFRVY 555 (591)
Q Consensus 485 p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~----~~~Y~~~v~ 555 (591)
|.++.....+...+.=+|.+-. ...+-+.|.++++......-..- ..+......+..... ...|.+.|.
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~--~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGK--EAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCT--TCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCC--CCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 3344444455778999998532 22345789888887653332222 222345566665555 247999999
Q ss_pred EEcCCcCCCCC
Q psy12425 556 AENVYGRSDPS 566 (591)
Q Consensus 556 A~n~~G~~~~s 566 (591)
+.+..|.-.+.
T Consensus 80 ~ss~~~~i~~~ 90 (99)
T PF09240_consen 80 GSSSAGSIRSS 90 (99)
T ss_dssp EEETTEEEECE
T ss_pred eccCCCccCCc
Confidence 99999865443
No 475
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=38.50 E-value=1.4e+02 Score=20.98 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEEe----ce-eeeeEEEE-cCcccCceEEEEEEE
Q psy12425 495 HDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIRV----GN-TRFTTMAI-TGLSPGHQYEFRVYA 556 (591)
Q Consensus 495 ~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~~----~~-~~~~~~~i-~~l~~~~~Y~~~v~A 556 (591)
...+.|+|+... .....|.|....... .....+ .. .....+.+ .+|.++..|.+++..
T Consensus 12 g~~~~I~W~~~~----~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSDG----TDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCCC----CCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 467999999532 122556666654443 222222 11 13445666 568988988888873
No 476
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=38.06 E-value=1.3e+02 Score=21.64 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.6
Q ss_pred CceeeeecCCeEEEE
Q psy12425 2 PNALYIPEGDNTKVK 16 (591)
Q Consensus 2 p~~~~v~~G~~~~l~ 16 (591)
|..+.|.+|+.|+|.
T Consensus 16 P~~i~v~~G~~V~~~ 30 (99)
T TIGR02656 16 PAKISIAAGDTVEWV 30 (99)
T ss_pred CCEEEECCCCEEEEE
Confidence 788999999999887
No 477
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=33.08 E-value=75 Score=26.21 Aligned_cols=86 Identities=22% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVY 560 (591)
Q Consensus 481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~ 560 (591)
.|..+..+........++.+.|.... ....+..|.+.++-.. ..........++.+|.+.+.|.|.+.|....
T Consensus 4 ~~~a~~~~~~~~~~~~s~~~~~~s~~--~~~~~~~~p~~~~~d~-----~~~~t~~~~~~~~g~~~et~y~~~~~a~~t~ 76 (181)
T COG3979 4 APPAPKSLMLTNVTTTSASLAASSSS--DNKASDTYPYVYAWDP-----KTVYTTGTVVTVEGLAPETEYWTLVEAPDTS 76 (181)
T ss_pred cCcCccceeecchhhhhhhhcccccc--ccccccCCCcccccCc-----cceecccceEEecCcceeeEEEEeeeccCCC
Confidence 34455556666777788888888641 1223344441111111 1123344688899999999999999997775
Q ss_pred cCCCCCCCcceEEec
Q psy12425 561 GRSDPSTTSDLITTY 575 (591)
Q Consensus 561 G~~~~s~~~~~~~t~ 575 (591)
| ..+......++.
T Consensus 77 g--~~s~~~~~~~~~ 89 (181)
T COG3979 77 G--NWSAWSRLLTVS 89 (181)
T ss_pred C--ccccceeeeeec
Confidence 4 444444343333
No 478
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=32.92 E-value=2.3e+02 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=12.7
Q ss_pred CCceeeeecCCeEEEEEEec
Q psy12425 1 MPNALYIPEGDNTKVKIFYA 20 (591)
Q Consensus 1 ~p~~~~v~~G~~~~l~C~~~ 20 (591)
||-+-.+..|++|.++|...
T Consensus 38 mPVpk~I~~GeTvEIR~~l~ 57 (137)
T PF12988_consen 38 MPVPKKIKKGETVEIRCELK 57 (137)
T ss_dssp ----SS--TTEEEEEEEEEE
T ss_pred eccccccCCCCEEEEEEEEe
Confidence 56677889999999999984
No 479
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=31.14 E-value=1e+02 Score=31.56 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=46.0
Q ss_pred CCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC----------CCCceEEeceeeeeEEEEcCcccCceEEEEEE
Q psy12425 486 QFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH----------PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVY 555 (591)
Q Consensus 486 ~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~ 555 (591)
..+++...+.+.+.|+|.- -| .-..|.|+.... ....|...+-+....+--..+.|.+.|.+||+
T Consensus 9 tslrI~kLsaN~v~l~Wdd----VG-~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed~~~p~t~Yk~Rv~ 83 (1030)
T PHA02579 9 TSLRIDKLSANQVYLTWDD----VG-ANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFEDKLQPNTYYKFRVA 83 (1030)
T ss_pred cEEEhhhhccceEEEEeec----cC-CceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhhccCCcceEEEEEE
Confidence 3456677889999999983 33 335788887632 22357776555555555556999999999997
Q ss_pred E
Q psy12425 556 A 556 (591)
Q Consensus 556 A 556 (591)
.
T Consensus 84 ~ 84 (1030)
T PHA02579 84 V 84 (1030)
T ss_pred e
Confidence 6
No 480
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=31.07 E-value=2.5e+02 Score=21.63 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=10.2
Q ss_pred CceeeeecCCeEEEE
Q psy12425 2 PNALYIPEGDNTKVK 16 (591)
Q Consensus 2 p~~~~v~~G~~~~l~ 16 (591)
|..++|.+|++|++.
T Consensus 53 PA~v~v~pGDTVtw~ 67 (128)
T COG3794 53 PAEVTVKPGDTVTWV 67 (128)
T ss_pred CcEEEECCCCEEEEE
Confidence 566777777777764
No 481
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=30.45 E-value=3.4e+02 Score=23.08 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=15.8
Q ss_pred EEEEEEcCCCC--CeeEEecCCccC
Q psy12425 311 QFQCTITGCPK--PTISWLKGSREI 333 (591)
Q Consensus 311 ~l~c~~~~~p~--~~v~W~~~~~~~ 333 (591)
...|.+...|. ..+.|.-++...
T Consensus 93 ~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 93 YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEEcceeeCCCeEEEEEECCccC
Confidence 34588877763 578998766543
No 482
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=28.92 E-value=3.7e+02 Score=22.92 Aligned_cols=162 Identities=14% Similarity=0.239 Sum_probs=74.2
Q ss_pred eeEEecCCccCCCCCc---eEEEEeCC---eEEEEE-cceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcc
Q psy12425 323 TISWLKGSREITPSAR---HHIFAEGD---TYTLII-NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 395 (591)
Q Consensus 323 ~v~W~~~~~~~~~~~~---~~~~~~~~---~~~l~i-~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~ 395 (591)
.+.|+.|+..+..... .....+|. ..+|.+ .+......-..+|.+.=.......+. +.-...|..-.+|..
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r-~~a~~~P~Vy~~P~v- 85 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETR-FNATATPSVYPKPRV- 85 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeE-eecccccceecCCEE-
Confidence 6789988887764321 12223331 224444 22222334568999765433332211 122222333222221
Q ss_pred cceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccceEEE--ecCCeeEEEEeccCC--Ccce--eEEEEEEc-C
Q psy12425 396 DTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGHFHVE--TSERHAILTIRDASN--VDTA--PYRVVAEN-D 466 (591)
Q Consensus 396 ~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~--~~~g--~y~c~a~n-~ 466 (591)
...+..| ...|.+.-.|. ..+.|..++............ -.+......|.+..+ ...| +|+|.... .
T Consensus 86 -sv~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GYP 161 (211)
T PF02124_consen 86 -SVRFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGYP 161 (211)
T ss_pred -EEEecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeCC
Confidence 1122233 34577665553 589999888654211111111 112234444544443 2334 89999873 2
Q ss_pred CCccceEEEEEecCCCCCCCCCee
Q psy12425 467 LGMDSAIVKIQISDRPDPPQFPTV 490 (591)
Q Consensus 467 ~g~~~~~~~~~v~~~p~~p~~~~~ 490 (591)
.+......+......|..+....+
T Consensus 162 ~~~p~f~~~~~yDasP~~~~~p~v 185 (211)
T PF02124_consen 162 DILPVFEDTATYDASPSAQGFPMV 185 (211)
T ss_pred CCCCcccceEEEcCCCccCCCcEE
Confidence 233333344444445555444443
No 483
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=28.24 E-value=1.8e+02 Score=19.88 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=26.5
Q ss_pred CceeeeecCCeEEEEEEeccCC---CceEEEEECCEEe
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQ---PMEVSLTKNGRVV 36 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~~~~~ 36 (591)
|....+..|+...|...+.... ...+.|.-.+..+
T Consensus 9 p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~v 46 (81)
T smart00635 9 PTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSV 46 (81)
T ss_pred CCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcE
Confidence 6778899999999999975422 4578898866544
No 484
>PHA03283 envelope glycoprotein E; Provisional
Probab=28.21 E-value=2e+02 Score=28.19 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480 (591)
Q Consensus 441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~ 480 (591)
.+.+.|.|.+.+.+++|.|.-...|..+.....+.|.|+.
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4568999999999999999999999877545566677766
No 485
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=27.88 E-value=2.8e+02 Score=21.60 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.5
Q ss_pred CceeeeecCCeEEEEEE
Q psy12425 2 PNALYIPEGDNTKVKIF 18 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~ 18 (591)
|..++|.+|+.|+|.-.
T Consensus 60 P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVE 76 (135)
T ss_pred CCEEEECCCCEEEEEEE
Confidence 78899999999988765
No 486
>KOG1026|consensus
Probab=27.77 E-value=41 Score=34.64 Aligned_cols=74 Identities=11% Similarity=-0.012 Sum_probs=49.7
Q ss_pred eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84 (591)
Q Consensus 5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~ 84 (591)
..+..|..+++.|...+.|-+.+.|+.++..........-.-. +.+.+ +. .+.|.+.|..|.....+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~~~~-~~--------~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SECEV-LE--------NDLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-cccee-ee--------chhhHHHHhhhhcCceeeeE
Confidence 4578899999999999999999999998765544321110000 11111 11 18999999998887776666
Q ss_pred EecC
Q psy12425 85 ITGL 88 (591)
Q Consensus 85 v~~~ 88 (591)
+..+
T Consensus 272 ~~~p 275 (774)
T KOG1026|consen 272 VDLP 275 (774)
T ss_pred Eecc
Confidence 6543
No 487
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.96 E-value=2.2e+02 Score=27.27 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred EEEEEcccCCCCceEEEEEEEcCCeeeE-EEEEEEEe
Q psy12425 51 IIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTFTINIT 86 (591)
Q Consensus 51 ~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~~l~v~ 86 (591)
..|+|.+++++.+|.|+....|..|... ..+-|.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 5799999999999999999998877664 44667775
No 488
>PHA03290 envelope glycoprotein I; Provisional
Probab=26.71 E-value=1.5e+02 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=26.5
Q ss_pred CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425 49 DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86 (591)
Q Consensus 49 ~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~ 86 (591)
...-|.|.+..++|+|.|..+++-.......-+.+.+.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 34679999999999999999997554333333444443
No 489
>PF14292 SusE: SusE outer membrane protein
Probab=26.52 E-value=2.9e+02 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=22.4
Q ss_pred ecCCeeEEEeeccccCCCcceeeEEEEeeeCC
Q psy12425 493 IGHDSLALVWRAPIWDGGSNITNYIVEKREHP 524 (591)
Q Consensus 493 ~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~ 524 (591)
...+.++++|+++.+........|.++....+
T Consensus 42 ~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 42 ASDNAVTFTWTAADYGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred cCCceEEEEEECCccCCCCCceEEEEEEeccC
Confidence 34568999999876443324568999987644
No 490
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=26.27 E-value=1.9e+02 Score=21.73 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=37.9
Q ss_pred CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81 (591)
Q Consensus 2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~ 81 (591)
|..++|..|++|++.=.-. ...+.+..+..+ .+...-....+...++++. ....+.|.|......|- .-
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~p--~g~~~~~s~~g~~~~~tF~---~~G~Y~Y~C~pH~~~GM---~G 82 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMIP--EGAEAFKSKINEEYTVTVT---EEGVYGVKCTPHYGMGM---VA 82 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCCc--CCcccccCCCCCEEEEEeC---CCEEEEEEcCCCccCCC---EE
Confidence 7889999999999965432 234444332111 1100000012333455553 35677888984433332 24
Q ss_pred EEEEecC
Q psy12425 82 TINITGL 88 (591)
Q Consensus 82 ~l~v~~~ 88 (591)
.|.|..+
T Consensus 83 ~V~Vg~~ 89 (116)
T TIGR02375 83 LIQVGDP 89 (116)
T ss_pred EEEECCC
Confidence 4555543
No 491
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=26.24 E-value=1.2e+02 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.7
Q ss_pred eeEEEEcCcccCceEEEEEEEEcCC
Q psy12425 536 FTTMAITGLSPGHQYEFRVYAENVY 560 (591)
Q Consensus 536 ~~~~~i~~l~~~~~Y~~~v~A~n~~ 560 (591)
...|.+.+|.||+.|.|.-...+..
T Consensus 101 lsaYqVtNL~pGTkY~isY~Vtkgt 125 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGT 125 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCc
Confidence 3578889999999999887775553
No 492
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=26.14 E-value=3.1e+02 Score=21.25 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=40.3
Q ss_pred CCeEEEEEEe---ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE-EEEEE
Q psy12425 10 GDNTKVKIFY---AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT-FTINI 85 (591)
Q Consensus 10 G~~~~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~-~~l~v 85 (591)
.+.+.+.... .|...-....+.||+.+..+... ...+- ...+...-.+.|++.+.|..|...+. +.+.|
T Consensus 35 ~~~v~V~VtwN~WsG~~Gd~~kly~dG~~V~tG~~~------~~~~a-~~~~~~gG~y~~~VeLCN~~GCS~S~~~~V~V 107 (133)
T PF08329_consen 35 NDQVDVSVTWNVWSGTNGDTAKLYFDGVLVWTGPSP------QQKSA-TFTVTKGGRYQMQVELCNADGCSTSAPVEVVV 107 (133)
T ss_dssp -SSEEEEEEEE-SSS---SEEEEEETTEEEEEEE--------SEEEE-EEEE-S-EEEEEEEEEEETTEEEE---EEEEE
T ss_pred cCceEEEEEEEEecCCCCCEEEEEECCEEEEeCCCc------cCceE-EEEecCCCEEEEEEEEECCCCcccCCCEEEEE
Confidence 4444444443 56677788889999987633211 01111 22344555667788888999987544 77777
Q ss_pred ecCCCCCCCCc
Q psy12425 86 TGLPGPPIGPL 96 (591)
Q Consensus 86 ~~~p~~p~~~~ 96 (591)
.+.-+.-..||
T Consensus 108 aDTDGsHl~pL 118 (133)
T PF08329_consen 108 ADTDGSHLAPL 118 (133)
T ss_dssp E-TTSTTS---
T ss_pred eCCCccccccc
Confidence 76554444443
No 493
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.37 E-value=6.6e+02 Score=24.99 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=64.3
Q ss_pred EEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEee-e----------cCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425 206 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA-I----------CAPSQINIPNLIEGRQYEFRVYAQNEAGLSL 274 (591)
Q Consensus 206 v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~----------~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~ 274 (591)
+...|..-.....-.+..|.++........|..++.. . .....|.|.+.....+|.|........|...
T Consensus 246 l~k~C~~~t~E~~La~a~F~Vn~~~~~~~~~~~VN~t~vf~~l~~~ip~i~~~vL~I~nAT~~naGVYtly~rg~~G~s~ 325 (642)
T PHA03281 246 VDVDCAAESKEDQLAEIGYRFHAKKAADPPWIVVNISEDFAELEFDPPDIEPGVLKFEHMEAHHAGVYIWNLQGSDGENM 325 (642)
T ss_pred ecccchhhcccceeeEEEEEEccccccCCceEEeccceeeecccCCCCcccCCeeEEEecccccceeEEEEecCCCCcce
Confidence 4445654332222344567775444444555554433 1 1245789999999999999988876656544
Q ss_pred CCCCcceEEEcCCCcc--CCCeEEeec----------cccceeccccEEEEEEEcCC-----CCCeeEEec
Q psy12425 275 PSSASNSVQIKDPMAA--KAPEIIVPL----------RNANAIQNHNAQFQCTITGC-----PKPTISWLK 328 (591)
Q Consensus 275 ~s~~~~~~~~~~~~~~--~~p~~~~~~----------~~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~ 328 (591)
.+ .+.+++...... .+|.+.... .......|+++.+....... -...+.|+.
T Consensus 326 ~s--vfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 326 YA--TFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eE--EEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 32 445555543311 122221111 12234567777776654321 124677765
No 494
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=24.77 E-value=1.2e+02 Score=19.69 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=25.6
Q ss_pred EEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425 14 KVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71 (591)
Q Consensus 14 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 71 (591)
+|+|.... ..-++||-||..+-.- . ..+|.+..+ .++|+|+-.
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRl-----t----~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRL-----T----QQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeee-----c----CCeEeeeee----eEEeeecCC
Confidence 46776533 3458999999866321 1 114545433 678999743
No 495
>PHA03282 envelope glycoprotein E; Provisional
Probab=23.54 E-value=2.2e+02 Score=27.35 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.0
Q ss_pred EEEEcccCCCCceEEEEEEEcCCee--eEEEEEEEEec
Q psy12425 52 IIFIKEIRKEDAGDYTVNLSNSSGS--VSGTFTINITG 87 (591)
Q Consensus 52 ~l~i~~~~~~d~g~Y~c~~~n~~g~--~~~~~~l~v~~ 87 (591)
+|.|.+++++|+|.|...+...... +...+.+.|..
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 6999999999999999997433222 23335555544
No 496
>KOG0200|consensus
Probab=23.37 E-value=6e+02 Score=26.30 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=61.3
Q ss_pred EEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCc----ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEee
Q psy12425 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK----FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424 (591)
Q Consensus 349 ~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~----~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~ 424 (591)
.+.+..+...+.|.|+|.+.| ......+. .... ..... ........+....+ +...+.+.+.|..
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIVIHRPILLAGE--NANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred eEEEEEEEecCCccEEEEEec----CceeeEee--cccCcccccccCC--CCCcceeeccccee---eeecCCCcceeee
Confidence 678888999999999999999 11111111 1111 11111 11111223444444 3334466777765
Q ss_pred CCeEee----eccc------------eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425 425 DNEVIE----SGGH------------FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474 (591)
Q Consensus 425 ~~~~~~----~~~~------------~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~ 474 (591)
...... .... .... ......+.+.++...+.+.|.|...+..+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 147 (609)
T KOG0200|consen 83 NLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKA 147 (609)
T ss_pred eecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCCcccccccce
Confidence 432110 0000 0001 33566788999999999999999987444443333
No 497
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=23.19 E-value=2.4e+02 Score=18.91 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=26.7
Q ss_pred eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375 (591)
Q Consensus 304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~ 375 (591)
...+..+.|.|. .+...|.+.-||..-.... .+.-..+.....+.+.+.+....|..+
T Consensus 12 ~~~~~~v~l~~~---~~~~~I~YT~DGs~Pt~~s-----------~~Y~~Pi~i~~~~~vka~a~~~~g~~s 69 (75)
T PF03174_consen 12 YDEGQTVTLSSD---TPGATIYYTLDGSEPTKSS-----------PLYTGPITIPESGTVKARAFDNGGNVS 69 (75)
T ss_dssp EEETTEEEEE-S---STTSEEEEESSSSSS---------------EE--CCC--B--S--EEEEE-TTS-B-
T ss_pred EecCeEEEEEeC---CCCCEEEEEcCCCcccccC-----------cccCcCEEeCCCcEEEEEEEcCCCCcC
Confidence 445678888883 3444788877765532111 122234555666678888887665544
No 498
>COG5475 Uncharacterized small protein [Function unknown]
Probab=23.19 E-value=2e+02 Score=17.94 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=19.7
Q ss_pred CeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSA 472 (591)
Q Consensus 442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~ 472 (591)
....+++.+.+. .|.|.|.-.+..|....
T Consensus 16 GGP~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 16 GGPRMTVSGYSS--DGMYECRWFDGYGVKRE 44 (60)
T ss_pred CCceEEEecccc--CCeEEEEEecCCCcccc
Confidence 344555555554 39999999999886533
No 499
>PRK02710 plastocyanin; Provisional
Probab=23.03 E-value=3.4e+02 Score=20.49 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=11.9
Q ss_pred CceeeeecCCeEEEE
Q psy12425 2 PNALYIPEGDNTKVK 16 (591)
Q Consensus 2 p~~~~v~~G~~~~l~ 16 (591)
|..++|..|+.|+|.
T Consensus 46 P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 46 PSTLTIKAGDTVKWV 60 (119)
T ss_pred CCEEEEcCCCEEEEE
Confidence 677888888888775
No 500
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=22.38 E-value=1.1e+02 Score=18.64 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=9.4
Q ss_pred eEEEEEEEEcCCc
Q psy12425 549 QYEFRVYAENVYG 561 (591)
Q Consensus 549 ~Y~~~v~A~n~~G 561 (591)
.|.|.|.|.|..|
T Consensus 37 ~y~~~vtatd~~G 49 (49)
T PF05345_consen 37 TYTFTVTATDGSG 49 (49)
T ss_pred EEEEEEEEEcCCC
Confidence 6777777777655
Done!